Query 021380
Match_columns 313
No_of_seqs 462 out of 2247
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 03:18:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fvq_A Fe(3+) IONS import ATP- 100.0 8.6E-43 2.9E-47 326.5 7.1 199 76-283 3-228 (359)
2 3tui_C Methionine import ATP-b 100.0 2.9E-42 9.8E-47 323.2 10.0 205 74-283 21-253 (366)
3 3rlf_A Maltose/maltodextrin im 100.0 1.6E-42 5.3E-47 326.9 7.8 200 75-283 1-223 (381)
4 2it1_A 362AA long hypothetical 100.0 3.9E-41 1.3E-45 316.2 9.6 200 75-283 1-223 (362)
5 1z47_A CYSA, putative ABC-tran 100.0 3.8E-41 1.3E-45 315.3 9.3 201 74-283 11-235 (355)
6 2olj_A Amino acid ABC transpor 100.0 4E-41 1.4E-45 303.9 7.9 200 75-283 22-248 (263)
7 2yyz_A Sugar ABC transporter, 100.0 2.7E-41 9.1E-46 317.0 6.6 200 75-283 1-223 (359)
8 3gfo_A Cobalt import ATP-bindi 100.0 1.5E-41 5.1E-46 308.5 4.7 201 76-284 6-234 (275)
9 1v43_A Sugar-binding transport 100.0 5.6E-41 1.9E-45 316.2 8.6 200 75-283 9-231 (372)
10 1g29_1 MALK, maltose transport 100.0 5.9E-41 2E-45 316.4 8.1 200 75-283 1-229 (372)
11 2pcj_A ABC transporter, lipopr 100.0 6.7E-41 2.3E-45 295.9 6.5 181 75-264 2-203 (224)
12 1vpl_A ABC transporter, ATP-bi 100.0 7.9E-41 2.7E-45 300.9 6.5 201 74-283 12-235 (256)
13 1b0u_A Histidine permease; ABC 100.0 1.2E-40 4E-45 301.0 7.0 198 77-283 6-242 (262)
14 1oxx_K GLCV, glucose, ABC tran 100.0 1.3E-40 4.6E-45 312.1 6.3 202 75-283 1-230 (353)
15 4g1u_C Hemin import ATP-bindin 100.0 3E-40 1E-44 298.8 8.4 198 75-283 9-237 (266)
16 3tif_A Uncharacterized ABC tra 100.0 1.5E-40 5.1E-45 295.7 5.7 200 77-281 1-232 (235)
17 1ji0_A ABC transporter; ATP bi 100.0 1.3E-39 4.4E-44 290.6 8.9 197 76-282 5-227 (240)
18 3d31_A Sulfate/molybdate ABC t 100.0 7.5E-40 2.6E-44 306.1 7.2 193 77-282 1-216 (348)
19 1g6h_A High-affinity branched- 100.0 2.3E-40 8E-45 298.3 3.6 197 75-280 5-239 (257)
20 2ihy_A ABC transporter, ATP-bi 100.0 8.2E-40 2.8E-44 297.8 3.2 200 76-282 20-251 (279)
21 2yz2_A Putative ABC transporte 100.0 7.4E-39 2.5E-43 289.8 5.6 199 77-284 2-228 (266)
22 2nq2_C Hypothetical ABC transp 100.0 3.9E-38 1.3E-42 283.0 8.4 192 76-282 3-216 (253)
23 1sgw_A Putative ABC transporte 100.0 6.6E-38 2.3E-42 274.7 8.8 179 76-266 9-198 (214)
24 2onk_A Molybdate/tungstate ABC 100.0 7.2E-39 2.5E-43 285.6 2.4 193 77-283 1-216 (240)
25 2d2e_A SUFC protein; ABC-ATPas 100.0 8E-38 2.7E-42 280.6 6.0 196 75-279 1-229 (250)
26 1mv5_A LMRA, multidrug resista 100.0 4E-37 1.4E-41 274.9 7.8 192 77-283 1-226 (243)
27 2ixe_A Antigen peptide transpo 100.0 8.8E-38 3E-42 283.4 2.5 197 76-284 15-246 (271)
28 2zu0_C Probable ATP-dependent 100.0 4.6E-37 1.6E-41 278.1 6.0 199 75-282 18-253 (267)
29 3nh6_A ATP-binding cassette SU 100.0 4.9E-37 1.7E-41 282.5 5.8 192 77-284 53-278 (306)
30 2ff7_A Alpha-hemolysin translo 100.0 1E-36 3.5E-41 272.9 7.1 190 77-282 7-231 (247)
31 2pjz_A Hypothetical protein ST 100.0 1.3E-36 4.6E-41 274.3 6.4 190 77-283 1-215 (263)
32 2cbz_A Multidrug resistance-as 100.0 4E-37 1.4E-41 273.9 2.5 190 75-283 1-217 (237)
33 2qi9_C Vitamin B12 import ATP- 100.0 8.9E-37 3E-41 273.5 3.6 187 77-282 4-221 (249)
34 2pze_A Cystic fibrosis transme 100.0 3.1E-35 1.1E-39 260.4 10.2 186 76-283 5-218 (229)
35 3gd7_A Fusion complex of cysti 100.0 6.3E-36 2.2E-40 283.4 4.6 190 76-283 18-242 (390)
36 2ghi_A Transport protein; mult 100.0 8.9E-36 3E-40 268.7 4.4 194 76-283 16-242 (260)
37 3b5x_A Lipid A export ATP-bind 100.0 2.4E-33 8.2E-38 279.6 8.8 193 76-283 340-567 (582)
38 3b60_A Lipid A export ATP-bind 100.0 5.7E-33 1.9E-37 276.8 6.5 193 77-284 341-568 (582)
39 2yl4_A ATP-binding cassette SU 100.0 5.1E-33 1.7E-37 277.9 5.9 196 78-283 342-570 (595)
40 2bbs_A Cystic fibrosis transme 100.0 1.2E-32 4E-37 251.8 7.7 183 76-283 39-247 (290)
41 3qf4_A ABC transporter, ATP-bi 100.0 4.9E-33 1.7E-37 277.4 5.1 194 77-284 341-567 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 4.2E-33 1.4E-37 278.6 3.8 192 77-284 354-579 (598)
43 4a82_A Cystic fibrosis transme 100.0 6E-33 2.1E-37 276.4 3.0 194 77-284 339-565 (578)
44 3aez_A Pantothenate kinase; tr 100.0 3.2E-32 1.1E-36 251.5 2.9 213 77-312 43-300 (312)
45 3bk7_A ABC transporter ATP-bin 100.0 8.5E-31 2.9E-35 261.4 9.3 190 75-284 355-564 (607)
46 1yqt_A RNAse L inhibitor; ATP- 100.0 1.1E-30 3.7E-35 257.8 8.4 190 75-284 285-494 (538)
47 4f4c_A Multidrug resistance pr 100.0 4.4E-31 1.5E-35 283.9 4.2 197 77-284 1076-1305(1321)
48 3ozx_A RNAse L inhibitor; ATP 100.0 9.2E-30 3.2E-34 250.8 10.0 175 75-266 267-451 (538)
49 4f4c_A Multidrug resistance pr 100.0 5.8E-30 2E-34 275.2 5.6 194 77-283 415-641 (1321)
50 3g5u_A MCG1178, multidrug resi 100.0 7.2E-30 2.5E-34 273.8 6.3 194 77-283 387-613 (1284)
51 3g5u_A MCG1178, multidrug resi 100.0 5E-30 1.7E-34 275.0 4.7 197 77-284 1030-1259(1284)
52 2iw3_A Elongation factor 3A; a 100.0 5.3E-30 1.8E-34 264.8 2.0 192 75-276 669-980 (986)
53 3j16_B RLI1P; ribosome recycli 99.9 3.4E-28 1.2E-32 242.4 9.7 187 81-284 350-560 (608)
54 3bk7_A ABC transporter ATP-bin 99.9 2.1E-28 7.2E-33 244.1 6.8 176 75-266 81-293 (607)
55 1yqt_A RNAse L inhibitor; ATP- 99.9 6.2E-28 2.1E-32 238.0 7.3 173 78-266 21-223 (538)
56 2jeo_A Uridine-cytidine kinase 99.9 3.2E-26 1.1E-30 204.1 12.4 197 96-310 14-214 (245)
57 2iw3_A Elongation factor 3A; a 99.9 5.8E-27 2E-31 242.2 7.1 184 77-283 435-635 (986)
58 3ux8_A Excinuclease ABC, A sub 99.9 4.1E-26 1.4E-30 230.9 8.8 185 96-283 33-298 (670)
59 3j16_B RLI1P; ribosome recycli 99.9 8.1E-26 2.8E-30 225.3 8.4 175 82-266 82-286 (608)
60 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.1E-27 3.6E-32 231.8 -12.0 187 75-281 116-336 (460)
61 3c8u_A Fructokinase; YP_612366 99.9 4.9E-24 1.7E-28 185.2 8.2 182 104-310 19-207 (208)
62 3ozx_A RNAse L inhibitor; ATP 99.9 6.1E-24 2.1E-28 209.3 9.7 169 81-266 3-202 (538)
63 3ux8_A Excinuclease ABC, A sub 99.9 2.8E-24 9.7E-29 217.4 4.9 94 189-282 521-639 (670)
64 3b85_A Phosphate starvation-in 99.9 6.2E-24 2.1E-28 185.1 0.2 145 85-266 8-163 (208)
65 3asz_A Uridine kinase; cytidin 99.9 1.8E-21 6.2E-26 168.7 13.5 178 104-312 3-188 (211)
66 2vf7_A UVRA2, excinuclease ABC 99.9 1.4E-22 4.9E-27 207.5 6.2 95 189-283 708-827 (842)
67 2r6f_A Excinuclease ABC subuni 99.9 1.2E-22 4E-27 209.0 4.9 94 190-283 824-942 (972)
68 2ygr_A Uvrabc system protein A 99.8 1.6E-21 5.4E-26 201.2 9.2 94 190-283 842-960 (993)
69 3pih_A Uvrabc system protein A 99.8 1.7E-21 5.8E-26 201.1 8.9 95 189-283 783-902 (916)
70 2v9p_A Replication protein E1; 99.8 1.6E-23 5.5E-28 192.1 -7.6 157 77-281 101-264 (305)
71 1sq5_A Pantothenate kinase; P- 99.8 9.5E-22 3.2E-26 181.1 3.4 214 77-312 37-297 (308)
72 3tqc_A Pantothenate kinase; bi 99.8 2E-21 6.9E-26 179.4 3.8 211 81-311 64-308 (321)
73 4gp7_A Metallophosphoesterase; 99.8 5.7E-21 2E-25 161.0 4.0 140 99-266 1-164 (171)
74 4aby_A DNA repair protein RECN 99.8 5E-20 1.7E-24 175.7 6.6 57 209-265 296-360 (415)
75 2ga8_A Hypothetical 39.9 kDa p 99.8 1.8E-19 6.1E-24 167.5 8.8 215 96-310 11-350 (359)
76 3sop_A Neuronal-specific septi 99.8 4.9E-20 1.7E-24 166.6 4.3 143 109-264 4-153 (270)
77 1tq4_A IIGP1, interferon-induc 99.8 2.7E-21 9.3E-26 184.2 -4.6 138 96-250 38-212 (413)
78 1z6g_A Guanylate kinase; struc 99.8 1.3E-20 4.3E-25 165.1 -3.7 154 96-266 12-199 (218)
79 1odf_A YGR205W, hypothetical 3 99.7 1.8E-18 6.2E-23 157.8 7.9 192 104-311 28-276 (290)
80 2dpy_A FLII, flagellum-specifi 99.7 5.3E-21 1.8E-25 184.0 -9.9 174 76-280 130-341 (438)
81 3b9q_A Chloroplast SRP recepto 99.7 1.3E-19 4.5E-24 166.3 -1.4 158 82-260 79-256 (302)
82 2pt7_A CAG-ALFA; ATPase, prote 99.7 3.3E-18 1.1E-22 158.9 7.5 130 80-269 151-285 (330)
83 1znw_A Guanylate kinase, GMP k 99.7 4.7E-20 1.6E-24 159.9 -5.2 72 95-173 10-85 (207)
84 1ye8_A Protein THEP1, hypothet 99.7 1.3E-18 4.5E-23 147.7 3.5 131 109-266 2-148 (178)
85 3qf7_A RAD50; ABC-ATPase, ATPa 99.7 5.1E-18 1.8E-22 159.7 4.6 61 204-264 275-348 (365)
86 2obl_A ESCN; ATPase, hydrolase 99.7 7.1E-19 2.4E-23 164.4 -4.1 64 76-147 44-108 (347)
87 2og2_A Putative signal recogni 99.7 3.7E-18 1.3E-22 159.9 0.4 146 98-260 148-313 (359)
88 2qnr_A Septin-2, protein NEDD5 99.6 1.7E-17 5.7E-22 152.3 0.7 156 81-262 2-168 (301)
89 1htw_A HI0065; nucleotide-bind 99.6 3.3E-17 1.1E-21 136.4 2.2 87 78-175 8-97 (158)
90 1e69_A Chromosome segregation 99.6 2.2E-16 7.4E-21 146.1 4.6 61 203-263 214-284 (322)
91 2o8b_B DNA mismatch repair pro 99.6 1.1E-16 3.7E-21 167.7 1.4 147 76-266 749-917 (1022)
92 2eyu_A Twitching motility prot 99.6 8.6E-16 3E-20 138.0 5.8 128 77-264 5-136 (261)
93 1s96_A Guanylate kinase, GMP k 99.6 4.8E-16 1.7E-20 136.1 4.0 160 102-312 11-183 (219)
94 1tf7_A KAIC; homohexamer, hexa 99.6 1.2E-16 4E-21 157.2 -2.3 77 76-159 11-97 (525)
95 2qag_C Septin-7; cell cycle, c 99.5 4.1E-15 1.4E-19 141.9 4.9 161 76-264 10-180 (418)
96 3szr_A Interferon-induced GTP- 99.5 2.4E-15 8.3E-20 150.2 1.5 153 77-264 10-199 (608)
97 1ewq_A DNA mismatch repair pro 99.5 4.1E-15 1.4E-19 151.5 3.2 125 95-264 567-701 (765)
98 1p9r_A General secretion pathw 99.5 2.8E-16 9.6E-21 150.1 -5.4 143 77-232 143-315 (418)
99 1tf7_A KAIC; homohexamer, hexa 99.5 1.1E-14 3.6E-19 143.3 5.4 147 77-261 257-417 (525)
100 2ehv_A Hypothetical protein PH 99.5 8.3E-15 2.8E-19 129.2 1.4 61 76-146 5-68 (251)
101 1rj9_A FTSY, signal recognitio 99.5 1.2E-14 4E-19 133.4 2.3 138 106-263 101-260 (304)
102 1cr0_A DNA primase/helicase; R 99.4 1.4E-14 4.8E-19 131.9 1.5 152 96-261 24-197 (296)
103 2i3b_A HCR-ntpase, human cance 99.4 9.6E-15 3.3E-19 125.0 0.1 130 107-261 1-149 (189)
104 3thx_B DNA mismatch repair pro 99.4 8.2E-15 2.8E-19 151.6 -1.8 129 95-265 661-800 (918)
105 1rz3_A Hypothetical protein rb 99.4 8.7E-14 3E-18 119.7 4.2 179 103-311 18-200 (201)
106 1pui_A ENGB, probable GTP-bind 99.4 5.2E-14 1.8E-18 120.8 2.1 164 76-249 2-191 (210)
107 4a74_A DNA repair and recombin 99.4 5E-15 1.7E-19 129.0 -4.7 49 78-132 2-50 (231)
108 2rcn_A Probable GTPase ENGC; Y 99.4 2.8E-14 9.7E-19 133.3 -2.2 117 96-223 205-328 (358)
109 3qkt_A DNA double-strand break 99.4 2.3E-12 7.9E-17 119.8 10.3 60 204-263 244-316 (339)
110 2o5v_A DNA replication and rep 99.4 4.7E-14 1.6E-18 132.1 -1.3 77 204-281 260-354 (359)
111 3jvv_A Twitching mobility prot 99.3 1.5E-12 5E-17 121.9 8.5 116 96-265 105-235 (356)
112 3thx_A DNA mismatch repair pro 99.3 6.1E-14 2.1E-18 145.4 -2.5 129 95-265 650-789 (934)
113 1nlf_A Regulatory protein REPA 99.3 6.3E-12 2.2E-16 113.4 9.0 142 103-264 26-184 (279)
114 2f1r_A Molybdopterin-guanine d 99.3 1.5E-13 5E-18 115.7 -1.7 101 108-229 3-124 (171)
115 2qm8_A GTPase/ATPase; G protei 99.3 1.8E-13 6.3E-18 127.2 -1.9 66 75-147 27-92 (337)
116 2gza_A Type IV secretion syste 99.3 6.6E-13 2.3E-17 124.6 1.6 76 79-159 137-231 (361)
117 2yv5_A YJEQ protein; hydrolase 99.3 1.2E-12 4E-17 120.0 3.1 112 103-219 161-298 (302)
118 2oap_1 GSPE-2, type II secreti 99.3 2.2E-13 7.5E-18 133.2 -2.4 49 96-147 249-297 (511)
119 3tr0_A Guanylate kinase, GMP k 99.3 1.5E-12 5.3E-17 111.4 3.0 31 101-131 1-31 (205)
120 3e70_C DPA, signal recognition 99.3 8E-13 2.7E-17 122.4 1.3 69 103-176 125-207 (328)
121 1lw7_A Transcriptional regulat 99.3 2.2E-13 7.5E-18 127.9 -2.8 46 96-144 157-208 (365)
122 1wb9_A DNA mismatch repair pro 99.2 2E-12 6.9E-17 132.5 3.5 129 96-265 597-734 (800)
123 2bdt_A BH3686; alpha-beta prot 99.2 3.7E-13 1.3E-17 114.2 -1.7 158 107-281 2-182 (189)
124 1in4_A RUVB, holliday junction 99.2 8.3E-14 2.8E-18 129.2 -6.3 132 77-219 18-173 (334)
125 2qag_B Septin-6, protein NEDD5 99.2 1.3E-12 4.3E-17 124.6 1.6 152 77-241 16-191 (427)
126 1zp6_A Hypothetical protein AT 99.2 6.8E-13 2.3E-17 112.4 -0.5 130 103-251 5-144 (191)
127 3euj_A Chromosome partition pr 99.2 6E-12 2E-16 121.8 5.6 48 96-147 19-66 (483)
128 2w0m_A SSO2452; RECA, SSPF, un 99.2 1.2E-11 4.2E-16 107.3 6.6 142 96-262 11-169 (235)
129 2yhs_A FTSY, cell division pro 99.2 4.3E-12 1.5E-16 122.7 4.0 77 97-178 283-373 (503)
130 2ewv_A Twitching motility prot 99.2 2.9E-11 9.8E-16 113.9 7.3 45 96-145 127-172 (372)
131 1pzn_A RAD51, DNA repair and r 99.2 7.4E-13 2.5E-17 123.7 -4.4 118 96-241 119-246 (349)
132 2qt1_A Nicotinamide riboside k 99.1 6.8E-11 2.3E-15 101.6 7.1 136 101-271 15-150 (207)
133 2x8a_A Nuclear valosin-contain 99.1 3.2E-12 1.1E-16 115.4 -1.8 113 96-226 35-155 (274)
134 1nij_A Hypothetical protein YJ 99.1 3.6E-14 1.2E-18 131.0 -15.0 37 108-147 5-49 (318)
135 1iy2_A ATP-dependent metallopr 99.1 8.9E-13 3E-17 118.9 -5.9 136 78-241 50-193 (278)
136 2bbw_A Adenylate kinase 4, AK4 99.1 2.8E-13 9.7E-18 120.0 -9.2 130 106-249 26-191 (246)
137 4e22_A Cytidylate kinase; P-lo 99.1 3.2E-11 1.1E-15 107.4 4.1 174 105-312 25-228 (252)
138 1u0l_A Probable GTPase ENGC; p 99.1 4E-11 1.4E-15 109.6 3.0 92 102-200 164-280 (301)
139 1ixz_A ATP-dependent metallopr 99.1 1.5E-12 5E-17 115.7 -6.5 132 78-241 26-169 (254)
140 1uj2_A Uridine-cytidine kinase 99.1 3.6E-10 1.2E-14 100.4 8.7 185 106-308 21-210 (252)
141 1qhl_A Protein (cell division 99.0 1.5E-11 5.3E-16 107.9 -1.1 56 77-147 9-64 (227)
142 3vaa_A Shikimate kinase, SK; s 99.0 1.4E-09 4.9E-14 92.9 11.3 37 96-132 14-50 (199)
143 3nwj_A ATSK2; P loop, shikimat 99.0 5.1E-11 1.7E-15 106.2 1.0 53 76-132 16-73 (250)
144 1t9h_A YLOQ, probable GTPase E 99.0 1.3E-11 4.4E-16 113.1 -3.2 110 102-215 168-302 (307)
145 1a7j_A Phosphoribulokinase; tr 99.0 1E-09 3.4E-14 99.8 9.3 189 106-312 4-216 (290)
146 3kta_A Chromosome segregation 99.0 3.9E-10 1.3E-14 94.7 5.3 116 98-218 18-152 (182)
147 3lnc_A Guanylate kinase, GMP k 99.0 1.6E-10 5.6E-15 101.1 2.9 37 96-132 16-53 (231)
148 2cvh_A DNA repair and recombin 98.9 1.2E-09 4.2E-14 94.0 7.3 130 96-262 8-157 (220)
149 3pih_A Uvrabc system protein A 98.9 4.2E-10 1.4E-14 116.4 3.1 93 191-283 444-560 (916)
150 2r6f_A Excinuclease ABC subuni 98.9 2E-10 6.9E-15 118.5 0.6 116 166-283 451-600 (972)
151 1vma_A Cell division protein F 98.9 2.3E-09 7.7E-14 98.2 6.1 99 99-237 96-197 (306)
152 2ygr_A Uvrabc system protein A 98.8 3.4E-10 1.1E-14 117.2 0.0 91 193-283 503-617 (993)
153 3ec2_A DNA replication protein 98.8 3.6E-09 1.2E-13 88.7 5.4 36 101-139 32-67 (180)
154 3uie_A Adenylyl-sulfate kinase 98.8 8.6E-10 2.9E-14 94.4 1.3 48 81-132 3-50 (200)
155 1sxj_E Activator 1 40 kDa subu 98.8 9.5E-09 3.2E-13 95.1 8.1 125 109-264 38-177 (354)
156 1udx_A The GTP-binding protein 98.8 3.2E-10 1.1E-14 108.0 -2.1 117 97-232 147-276 (416)
157 2kjq_A DNAA-related protein; s 98.8 2.9E-08 9.9E-13 81.2 9.5 32 96-132 30-61 (149)
158 3k1j_A LON protease, ATP-depen 98.7 2.3E-09 7.7E-14 107.0 2.0 164 80-252 37-226 (604)
159 1jjv_A Dephospho-COA kinase; P 98.7 5.5E-08 1.9E-12 83.1 8.9 71 229-312 107-177 (206)
160 1ls1_A Signal recognition part 98.7 7.1E-09 2.4E-13 94.4 2.9 55 78-143 77-131 (295)
161 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 3.6E-09 1.2E-13 100.0 0.1 40 103-145 16-67 (392)
162 1f2t_B RAD50 ABC-ATPase; DNA d 98.6 7.6E-09 2.6E-13 84.7 2.0 60 203-262 52-124 (148)
163 1lvg_A Guanylate kinase, GMP k 98.6 1.9E-08 6.4E-13 86.1 4.2 28 105-132 2-29 (198)
164 3a00_A Guanylate kinase, GMP k 98.6 1.7E-08 5.7E-13 85.3 2.5 26 107-132 1-26 (186)
165 2vf7_A UVRA2, excinuclease ABC 98.6 1.1E-08 3.9E-13 105.0 1.7 90 194-283 362-475 (842)
166 2j41_A Guanylate kinase; GMP, 98.6 2.5E-08 8.7E-13 84.9 3.6 35 102-139 1-35 (207)
167 2p67_A LAO/AO transport system 98.5 1E-08 3.6E-13 95.1 -0.4 60 77-143 30-89 (341)
168 2if2_A Dephospho-COA kinase; a 98.5 2.9E-07 9.8E-12 78.4 8.6 70 228-311 106-175 (204)
169 2dhr_A FTSH; AAA+ protein, hex 98.5 9.1E-09 3.1E-13 100.1 -1.1 135 78-237 41-187 (499)
170 2px0_A Flagellar biosynthesis 98.5 1.1E-06 3.7E-11 79.9 12.4 43 105-160 103-145 (296)
171 1zu4_A FTSY; GTPase, signal re 98.5 9.2E-08 3.2E-12 88.0 4.6 46 98-146 96-141 (320)
172 1kgd_A CASK, peripheral plasma 98.5 7.3E-08 2.5E-12 80.9 3.4 28 105-132 3-30 (180)
173 4eun_A Thermoresistant glucoki 98.4 1.9E-07 6.6E-12 79.6 4.1 32 101-132 23-54 (200)
174 3lda_A DNA repair protein RAD5 98.4 3.4E-07 1.2E-11 86.7 5.9 30 103-132 174-205 (400)
175 1w1w_A Structural maintenance 98.3 2.5E-07 8.7E-12 88.3 4.6 57 208-264 333-400 (430)
176 1svm_A Large T antigen; AAA+ f 98.3 1.4E-07 5E-12 88.6 2.8 37 96-132 158-194 (377)
177 2vp4_A Deoxynucleoside kinase; 98.3 1.8E-07 6.1E-12 81.7 2.6 31 100-130 13-43 (230)
178 1n0w_A DNA repair protein RAD5 98.3 3.6E-07 1.2E-11 79.5 4.4 28 103-130 20-47 (243)
179 2ius_A DNA translocase FTSK; n 98.3 1.2E-07 4E-12 92.4 1.2 156 99-262 159-343 (512)
180 3t61_A Gluconokinase; PSI-biol 98.3 9.2E-06 3.2E-10 68.9 13.0 65 239-311 96-163 (202)
181 3cr8_A Sulfate adenylyltranfer 98.3 3E-07 1E-11 90.5 3.9 40 103-145 365-406 (552)
182 3kta_B Chromosome segregation 98.3 3.2E-07 1.1E-11 76.9 3.3 63 203-265 59-131 (173)
183 3tau_A Guanylate kinase, GMP k 98.3 4.2E-07 1.4E-11 78.1 3.8 28 105-132 6-33 (208)
184 4ad8_A DNA repair protein RECN 98.2 4.5E-07 1.5E-11 88.7 3.9 62 205-266 393-463 (517)
185 3m6a_A ATP-dependent protease 98.2 1.8E-07 6E-12 92.2 1.0 60 79-146 85-144 (543)
186 3r20_A Cytidylate kinase; stru 98.2 4.4E-06 1.5E-10 73.3 9.5 60 253-312 148-211 (233)
187 1knq_A Gluconate kinase; ALFA/ 98.2 9.5E-07 3.2E-11 73.2 4.3 28 105-132 6-33 (175)
188 2f6r_A COA synthase, bifunctio 98.1 2.1E-06 7.3E-11 77.3 5.8 72 227-311 181-252 (281)
189 1kag_A SKI, shikimate kinase I 98.1 1.1E-06 3.7E-11 72.6 3.5 27 106-132 3-29 (173)
190 1oix_A RAS-related protein RAB 98.1 1.2E-06 4E-11 73.9 3.3 39 108-146 30-76 (191)
191 3ney_A 55 kDa erythrocyte memb 98.1 1.6E-06 5.5E-11 74.1 4.0 31 102-132 14-44 (197)
192 3lw7_A Adenylate kinase relate 98.1 4.5E-05 1.5E-09 62.2 12.7 79 227-311 78-160 (179)
193 2r6a_A DNAB helicase, replicat 98.1 3.9E-06 1.3E-10 80.7 6.9 127 96-240 192-327 (454)
194 4eaq_A DTMP kinase, thymidylat 98.1 3.4E-06 1.2E-10 73.7 5.4 37 96-132 12-51 (229)
195 3ice_A Transcription terminati 98.1 1.9E-06 6.4E-11 80.8 3.8 53 77-132 133-199 (422)
196 2ffh_A Protein (FFH); SRP54, s 98.0 2.1E-06 7.3E-11 81.8 3.9 53 80-143 79-131 (425)
197 1cke_A CK, MSSA, protein (cyti 98.0 1.2E-06 4.2E-11 75.5 1.9 37 107-143 5-41 (227)
198 2grj_A Dephospho-COA kinase; T 98.0 9.2E-06 3.1E-10 69.1 7.3 27 106-132 11-37 (192)
199 1j8m_F SRP54, signal recogniti 98.0 1.7E-06 5.9E-11 78.6 2.7 53 80-142 77-130 (297)
200 2pez_A Bifunctional 3'-phospho 98.0 3E-06 1E-10 70.6 3.6 28 105-132 3-30 (179)
201 1f2t_A RAD50 ABC-ATPase; DNA d 98.0 4.8E-06 1.6E-10 67.8 4.7 32 99-131 16-47 (149)
202 2www_A Methylmalonic aciduria 98.0 3.5E-06 1.2E-10 78.3 4.3 40 105-147 72-111 (349)
203 2f9l_A RAB11B, member RAS onco 98.0 3.2E-06 1.1E-10 71.5 3.0 23 109-131 7-29 (199)
204 1m7g_A Adenylylsulfate kinase; 97.9 2.6E-06 9E-11 73.1 2.1 35 102-139 20-54 (211)
205 1sxj_C Activator 1 40 kDa subu 97.9 1.4E-06 4.9E-11 80.3 0.3 53 81-140 22-76 (340)
206 3trf_A Shikimate kinase, SK; a 97.9 3.3E-05 1.1E-09 64.3 8.2 26 107-132 5-30 (185)
207 2dr3_A UPF0273 protein PH0284; 97.9 7.7E-06 2.6E-10 71.1 4.4 37 96-132 11-49 (247)
208 2yvu_A Probable adenylyl-sulfa 97.9 8.9E-06 3E-10 68.1 4.6 32 101-132 7-38 (186)
209 3t34_A Dynamin-related protein 97.9 3.7E-06 1.3E-10 78.3 2.2 56 80-142 11-68 (360)
210 1y63_A LMAJ004144AAA protein; 97.8 1.4E-05 4.9E-10 66.9 4.1 32 99-130 2-33 (184)
211 1w1w_A Structural maintenance 97.8 8.7E-06 3E-10 77.6 2.9 45 78-132 7-51 (430)
212 4ad8_A DNA repair protein RECN 97.8 6.4E-06 2.2E-10 80.5 1.6 35 96-131 50-84 (517)
213 2qag_A Septin-2, protein NEDD5 97.7 4.2E-06 1.4E-10 78.1 0.2 46 77-132 17-62 (361)
214 3qks_A DNA double-strand break 97.7 3.6E-05 1.2E-09 65.8 5.2 33 99-132 16-48 (203)
215 4i1u_A Dephospho-COA kinase; s 97.7 0.00092 3.1E-08 57.4 14.0 73 227-311 112-184 (210)
216 2qor_A Guanylate kinase; phosp 97.7 2.1E-05 7.3E-10 66.9 3.4 29 104-132 9-37 (204)
217 3auy_A DNA double-strand break 97.6 1.9E-05 6.6E-10 73.8 2.2 59 205-263 277-348 (371)
218 3hr8_A Protein RECA; alpha and 97.6 3.8E-05 1.3E-09 71.5 4.1 36 103-141 57-92 (356)
219 3cm0_A Adenylate kinase; ATP-b 97.6 4.7E-05 1.6E-09 63.3 3.9 28 105-132 2-29 (186)
220 1q3t_A Cytidylate kinase; nucl 97.5 5.6E-05 1.9E-09 65.9 4.2 29 104-132 13-41 (236)
221 4a1f_A DNAB helicase, replicat 97.5 6.1E-05 2.1E-09 69.6 4.6 37 96-132 35-71 (338)
222 2gj8_A MNME, tRNA modification 97.5 4.2E-05 1.4E-09 63.1 3.0 27 105-131 2-28 (172)
223 1f6b_A SAR1; gtpases, N-termin 97.5 2.1E-05 7.1E-10 66.5 0.9 33 96-129 15-47 (198)
224 1ega_A Protein (GTP-binding pr 97.5 4E-05 1.4E-09 69.6 2.7 27 105-131 6-32 (301)
225 1m2o_B GTP-binding protein SAR 97.5 5.6E-05 1.9E-09 63.3 3.4 34 96-130 13-46 (190)
226 2ohf_A Protein OLA1, GTP-bindi 97.5 5.2E-05 1.8E-09 71.4 3.4 40 103-145 18-68 (396)
227 3bh0_A DNAB-like replicative h 97.4 0.00016 5.5E-09 66.0 6.3 36 96-131 57-92 (315)
228 2p5t_B PEZT; postsegregational 97.4 5.6E-05 1.9E-09 66.7 3.0 36 96-132 22-57 (253)
229 3kb2_A SPBC2 prophage-derived 97.4 8.8E-05 3E-09 60.6 3.8 24 109-132 3-26 (173)
230 1lv7_A FTSH; alpha/beta domain 97.4 8.5E-05 2.9E-09 65.3 3.8 35 96-132 36-70 (257)
231 1np6_A Molybdopterin-guanine d 97.4 8.8E-05 3E-09 62.0 3.6 25 108-132 7-31 (174)
232 2dy1_A Elongation factor G; tr 97.4 9.9E-05 3.4E-09 74.3 4.1 40 101-141 3-42 (665)
233 2wji_A Ferrous iron transport 97.3 9.1E-05 3.1E-09 60.4 2.8 24 108-131 4-27 (165)
234 1qhx_A CPT, protein (chloramph 97.3 0.00015 5.1E-09 59.8 3.9 26 107-132 3-28 (178)
235 2ze6_A Isopentenyl transferase 97.3 0.00017 5.7E-09 63.7 4.0 25 108-132 2-26 (253)
236 2rhm_A Putative kinase; P-loop 97.3 0.00018 6.2E-09 59.9 4.1 28 105-132 3-30 (193)
237 3kl4_A SRP54, signal recogniti 97.3 0.00016 5.5E-09 68.9 4.1 33 106-141 96-128 (433)
238 2zr9_A Protein RECA, recombina 97.3 0.00015 5.3E-09 67.2 3.9 30 103-132 57-86 (349)
239 1vht_A Dephospho-COA kinase; s 97.3 0.00019 6.4E-09 61.4 4.1 24 106-129 3-26 (218)
240 1kht_A Adenylate kinase; phosp 97.2 0.00019 6.4E-09 59.6 4.0 26 107-132 3-28 (192)
241 4ag6_A VIRB4 ATPase, type IV s 97.2 0.00024 8.3E-09 66.6 5.1 36 106-144 34-69 (392)
242 1via_A Shikimate kinase; struc 97.2 0.00016 5.4E-09 59.7 3.3 24 109-132 6-29 (175)
243 2jaq_A Deoxyguanosine kinase; 97.2 0.0002 6.7E-09 60.2 3.9 24 109-132 2-25 (205)
244 2ce7_A Cell division protein F 97.2 5.1E-05 1.7E-09 73.3 0.1 47 80-132 28-74 (476)
245 1mky_A Probable GTP-binding pr 97.2 0.00018 6.3E-09 68.6 3.9 24 108-131 181-204 (439)
246 3auy_A DNA double-strand break 97.2 0.00016 5.4E-09 67.5 3.4 33 96-129 15-47 (371)
247 2wjg_A FEOB, ferrous iron tran 97.2 0.00016 5.6E-09 59.7 3.0 23 108-130 8-30 (188)
248 3iij_A Coilin-interacting nucl 97.2 0.0002 6.9E-09 59.3 3.4 29 104-132 8-36 (180)
249 4fcw_A Chaperone protein CLPB; 97.2 0.0001 3.5E-09 66.4 1.4 30 108-140 48-77 (311)
250 1gtv_A TMK, thymidylate kinase 97.1 8.7E-05 3E-09 63.0 0.9 24 109-132 2-25 (214)
251 2plr_A DTMP kinase, probable t 97.1 0.00032 1.1E-08 59.1 4.3 27 106-132 3-29 (213)
252 1uf9_A TT1252 protein; P-loop, 97.1 0.00028 9.6E-09 59.2 3.8 72 227-311 106-177 (203)
253 2c95_A Adenylate kinase 1; tra 97.1 0.00031 1E-08 58.6 3.9 28 105-132 7-34 (196)
254 1tev_A UMP-CMP kinase; ploop, 97.1 0.00033 1.1E-08 58.2 4.1 27 106-132 2-28 (196)
255 2bwj_A Adenylate kinase 5; pho 97.1 0.00015 5.3E-09 60.6 2.0 30 103-132 8-37 (199)
256 1ypw_A Transitional endoplasmi 97.1 0.00023 7.8E-09 73.1 3.6 32 101-132 232-263 (806)
257 2v54_A DTMP kinase, thymidylat 97.1 0.0003 1E-08 59.2 3.7 26 106-131 3-28 (204)
258 3ake_A Cytidylate kinase; CMP 97.1 0.00032 1.1E-08 59.1 3.8 24 109-132 4-27 (208)
259 1xjc_A MOBB protein homolog; s 97.1 0.00032 1.1E-08 58.2 3.7 25 108-132 5-29 (169)
260 3d3q_A TRNA delta(2)-isopenten 97.1 0.00056 1.9E-08 63.1 5.7 25 108-132 8-32 (340)
261 2wwf_A Thymidilate kinase, put 97.1 0.00035 1.2E-08 59.1 3.9 29 104-132 7-35 (212)
262 2zej_A Dardarin, leucine-rich 97.1 0.0002 6.9E-09 59.3 2.3 23 109-131 4-26 (184)
263 1ly1_A Polynucleotide kinase; 97.1 0.00032 1.1E-08 57.6 3.4 22 108-129 3-24 (181)
264 1ex7_A Guanylate kinase; subst 97.0 0.00034 1.2E-08 59.0 3.4 22 110-131 4-25 (186)
265 1gvn_B Zeta; postsegregational 97.0 0.00039 1.3E-08 62.6 4.0 28 104-131 30-57 (287)
266 1nn5_A Similar to deoxythymidy 97.0 0.00041 1.4E-08 58.8 3.9 28 105-132 7-34 (215)
267 3cf0_A Transitional endoplasmi 97.0 0.00037 1.3E-08 62.9 3.7 32 101-132 43-74 (301)
268 2vli_A Antibiotic resistance p 97.0 0.0003 1E-08 58.1 2.8 27 106-132 4-30 (183)
269 1aky_A Adenylate kinase; ATP:A 96.9 0.00056 1.9E-08 58.5 4.1 27 106-132 3-29 (220)
270 2qtf_A Protein HFLX, GTP-bindi 96.9 0.00035 1.2E-08 65.1 3.0 39 107-145 178-225 (364)
271 1nks_A Adenylate kinase; therm 96.9 0.00049 1.7E-08 57.1 3.6 24 109-132 3-26 (194)
272 2z0h_A DTMP kinase, thymidylat 96.9 0.00054 1.8E-08 57.2 3.8 24 109-132 2-25 (197)
273 3lxx_A GTPase IMAP family memb 96.9 0.00039 1.3E-08 60.3 3.0 25 108-132 30-54 (239)
274 2cdn_A Adenylate kinase; phosp 96.9 0.00072 2.5E-08 56.9 4.2 28 105-132 18-45 (201)
275 1jal_A YCHF protein; nucleotid 96.9 0.00076 2.6E-08 62.8 4.6 39 107-145 2-48 (363)
276 1zd8_A GTP:AMP phosphotransfer 96.8 0.00063 2.2E-08 58.6 3.5 28 105-132 5-32 (227)
277 1ukz_A Uridylate kinase; trans 96.8 0.00078 2.7E-08 56.7 4.0 28 105-132 13-40 (203)
278 3k53_A Ferrous iron transport 96.8 0.00048 1.6E-08 61.1 2.7 23 109-131 5-27 (271)
279 3fb4_A Adenylate kinase; psych 96.8 0.00076 2.6E-08 57.4 3.8 24 109-132 2-25 (216)
280 1zuh_A Shikimate kinase; alpha 96.8 0.00083 2.8E-08 54.8 3.9 26 107-132 7-32 (168)
281 2pbr_A DTMP kinase, thymidylat 96.8 0.00078 2.7E-08 55.9 3.8 24 109-132 2-25 (195)
282 1qf9_A UMP/CMP kinase, protein 96.8 0.0009 3.1E-08 55.4 4.1 26 107-132 6-31 (194)
283 1e6c_A Shikimate kinase; phosp 96.8 0.0007 2.4E-08 55.3 3.3 25 108-132 3-27 (173)
284 2iyv_A Shikimate kinase, SK; t 96.8 0.00065 2.2E-08 56.3 3.1 25 108-132 3-27 (184)
285 1zak_A Adenylate kinase; ATP:A 96.8 0.0007 2.4E-08 58.0 3.4 27 106-132 4-30 (222)
286 2pt5_A Shikimate kinase, SK; a 96.8 0.00094 3.2E-08 54.3 3.9 24 109-132 2-25 (168)
287 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0011 3.8E-08 58.5 4.3 27 106-132 3-29 (260)
288 3dl0_A Adenylate kinase; phosp 96.7 0.00091 3.1E-08 56.9 3.6 24 109-132 2-25 (216)
289 3crm_A TRNA delta(2)-isopenten 96.7 0.0019 6.5E-08 59.1 5.9 25 108-132 6-30 (323)
290 3tlx_A Adenylate kinase 2; str 96.7 0.0012 4.1E-08 57.7 4.4 28 105-132 27-54 (243)
291 3exa_A TRNA delta(2)-isopenten 96.7 0.0019 6.4E-08 58.9 5.5 26 107-132 3-28 (322)
292 2ged_A SR-beta, signal recogni 96.7 0.0011 3.6E-08 55.0 3.6 25 107-131 48-72 (193)
293 1sky_E F1-ATPase, F1-ATP synth 96.6 0.00064 2.2E-08 65.3 2.3 36 96-132 141-176 (473)
294 2w58_A DNAI, primosome compone 96.6 0.0017 5.9E-08 54.5 4.7 25 108-132 55-79 (202)
295 3llm_A ATP-dependent RNA helic 96.6 0.00082 2.8E-08 58.3 2.5 28 103-130 72-99 (235)
296 1z2a_A RAS-related protein RAB 96.6 0.0013 4.6E-08 52.7 3.5 23 109-131 7-29 (168)
297 3foz_A TRNA delta(2)-isopenten 96.6 0.0034 1.2E-07 57.0 6.5 26 107-132 10-35 (316)
298 2dyk_A GTP-binding protein; GT 96.6 0.0014 4.8E-08 52.2 3.6 23 109-131 3-25 (161)
299 3umf_A Adenylate kinase; rossm 96.6 0.0017 5.8E-08 56.1 4.3 31 102-132 24-54 (217)
300 2xb4_A Adenylate kinase; ATP-b 96.6 0.0014 4.9E-08 56.3 3.8 24 109-132 2-25 (223)
301 3a8t_A Adenylate isopentenyltr 96.6 0.0027 9.1E-08 58.4 5.8 27 106-132 39-65 (339)
302 1v5w_A DMC1, meiotic recombina 96.5 0.0016 5.5E-08 60.0 4.2 29 103-131 118-146 (343)
303 3be4_A Adenylate kinase; malar 96.5 0.0014 4.9E-08 56.0 3.6 27 106-132 4-30 (217)
304 2ce2_X GTPase HRAS; signaling 96.5 0.0014 4.7E-08 52.2 3.3 23 109-131 5-27 (166)
305 1kao_A RAP2A; GTP-binding prot 96.5 0.0016 5.3E-08 52.0 3.6 24 108-131 4-27 (167)
306 3bos_A Putative DNA replicatio 96.5 0.0018 6E-08 55.3 4.1 27 106-132 51-77 (242)
307 2q6t_A DNAB replication FORK h 96.5 0.0045 1.5E-07 59.0 7.2 37 96-132 189-225 (444)
308 1u8z_A RAS-related protein RAL 96.5 0.0016 5.5E-08 52.0 3.5 24 108-131 5-28 (168)
309 1z0j_A RAB-22, RAS-related pro 96.5 0.0017 5.7E-08 52.2 3.6 24 108-131 7-30 (170)
310 3b1v_A Ferrous iron uptake tra 96.5 0.0012 4E-08 59.0 2.8 24 108-131 4-27 (272)
311 2lkc_A Translation initiation 96.5 0.0016 5.5E-08 52.9 3.5 27 105-131 6-32 (178)
312 1z08_A RAS-related protein RAB 96.5 0.0017 5.9E-08 52.2 3.6 23 109-131 8-30 (170)
313 1ky3_A GTP-binding protein YPT 96.5 0.0017 5.9E-08 52.7 3.6 24 108-131 9-32 (182)
314 1fnn_A CDC6P, cell division co 96.5 0.0019 6.5E-08 59.5 4.2 27 106-132 41-69 (389)
315 1ek0_A Protein (GTP-binding pr 96.4 0.0018 6.2E-08 51.9 3.5 23 109-131 5-27 (170)
316 1c1y_A RAS-related protein RAP 96.4 0.0018 6.2E-08 51.8 3.5 22 109-130 5-26 (167)
317 2qby_A CDC6 homolog 1, cell di 96.4 0.0015 5E-08 60.0 3.4 28 105-132 43-70 (386)
318 1njg_A DNA polymerase III subu 96.4 0.00076 2.6E-08 57.3 1.3 24 109-132 47-70 (250)
319 1wms_A RAB-9, RAB9, RAS-relate 96.4 0.0019 6.5E-08 52.4 3.6 23 109-131 9-31 (177)
320 2erx_A GTP-binding protein DI- 96.4 0.0016 5.4E-08 52.4 3.1 23 108-130 4-26 (172)
321 1g16_A RAS-related protein SEC 96.4 0.0017 5.8E-08 52.1 3.3 23 109-131 5-27 (170)
322 4edh_A DTMP kinase, thymidylat 96.4 0.0023 7.8E-08 55.0 4.2 28 105-132 4-31 (213)
323 2h92_A Cytidylate kinase; ross 96.4 0.0017 5.7E-08 55.3 3.3 26 107-132 3-28 (219)
324 3v9p_A DTMP kinase, thymidylat 96.4 0.0018 6.1E-08 56.3 3.5 28 105-132 23-50 (227)
325 2nzj_A GTP-binding protein REM 96.4 0.0015 5.1E-08 52.9 2.8 23 109-131 6-28 (175)
326 1e4v_A Adenylate kinase; trans 96.4 0.0018 6.3E-08 55.1 3.5 24 109-132 2-25 (214)
327 2fn4_A P23, RAS-related protei 96.4 0.0018 6.2E-08 52.6 3.3 23 108-130 10-32 (181)
328 2z43_A DNA repair and recombin 96.4 0.0027 9.3E-08 57.9 4.9 29 103-131 103-131 (324)
329 3eph_A TRNA isopentenyltransfe 96.4 0.0045 1.6E-07 58.2 6.4 25 108-132 3-27 (409)
330 1ak2_A Adenylate kinase isoenz 96.4 0.0024 8.3E-08 55.2 4.2 28 105-132 14-41 (233)
331 1upt_A ARL1, ADP-ribosylation 96.4 0.0025 8.6E-08 51.2 4.0 25 106-130 6-30 (171)
332 1r2q_A RAS-related protein RAB 96.4 0.0022 7.4E-08 51.4 3.5 22 109-130 8-29 (170)
333 4dsu_A GTPase KRAS, isoform 2B 96.4 0.0022 7.5E-08 52.5 3.6 23 109-131 6-28 (189)
334 2oil_A CATX-8, RAS-related pro 96.4 0.0022 7.4E-08 53.1 3.6 23 109-131 27-49 (193)
335 3q85_A GTP-binding protein REM 96.4 0.0017 5.7E-08 52.3 2.8 23 109-131 4-26 (169)
336 1sxj_D Activator 1 41 kDa subu 96.4 0.0013 4.6E-08 59.9 2.5 36 97-132 46-83 (353)
337 3b9p_A CG5977-PA, isoform A; A 96.3 0.0023 7.9E-08 57.1 4.0 27 106-132 53-79 (297)
338 3clv_A RAB5 protein, putative; 96.3 0.0022 7.6E-08 52.9 3.6 25 107-131 7-31 (208)
339 3bc1_A RAS-related protein RAB 96.3 0.0023 7.8E-08 52.5 3.5 23 109-131 13-35 (195)
340 3lv8_A DTMP kinase, thymidylat 96.3 0.0024 8.1E-08 55.9 3.8 28 105-132 25-52 (236)
341 3q72_A GTP-binding protein RAD 96.3 0.0012 4E-08 53.0 1.7 23 109-131 4-26 (166)
342 1svi_A GTP-binding protein YSX 96.3 0.0016 5.4E-08 53.9 2.5 24 107-130 23-46 (195)
343 3t1o_A Gliding protein MGLA; G 96.3 0.0023 8E-08 52.7 3.5 24 109-132 16-39 (198)
344 3pqc_A Probable GTP-binding pr 96.3 0.0016 5.6E-08 53.6 2.5 24 108-131 24-47 (195)
345 1r8s_A ADP-ribosylation factor 96.3 0.0025 8.5E-08 51.0 3.5 23 109-131 2-24 (164)
346 2wsm_A Hydrogenase expression/ 96.3 0.0046 1.6E-07 52.4 5.4 26 107-132 30-55 (221)
347 3lxw_A GTPase IMAP family memb 96.3 0.0019 6.6E-08 56.5 3.0 25 107-131 21-45 (247)
348 3con_A GTPase NRAS; structural 96.3 0.0025 8.4E-08 52.6 3.5 24 108-131 22-45 (190)
349 2qmh_A HPR kinase/phosphorylas 96.3 0.0032 1.1E-07 53.6 4.2 34 96-130 24-57 (205)
350 1fzq_A ADP-ribosylation factor 96.3 0.0015 5.1E-08 53.9 2.2 25 106-130 15-39 (181)
351 3ihw_A Centg3; RAS, centaurin, 96.3 0.0025 8.7E-08 52.7 3.6 23 108-130 21-43 (184)
352 2a9k_A RAS-related protein RAL 96.3 0.0025 8.7E-08 51.9 3.5 24 108-131 19-42 (187)
353 2e87_A Hypothetical protein PH 96.3 0.0015 5.2E-08 60.4 2.4 27 105-131 165-191 (357)
354 1z0f_A RAB14, member RAS oncog 96.3 0.0026 8.8E-08 51.5 3.5 24 108-131 16-39 (179)
355 2y8e_A RAB-protein 6, GH09086P 96.3 0.0024 8.2E-08 51.7 3.3 24 108-131 15-38 (179)
356 2g6b_A RAS-related protein RAB 96.3 0.0027 9.2E-08 51.6 3.5 24 108-131 11-34 (180)
357 3tw8_B RAS-related protein RAB 96.2 0.0016 5.4E-08 52.9 2.1 22 109-130 11-32 (181)
358 4tmk_A Protein (thymidylate ki 96.2 0.0029 1E-07 54.3 3.8 27 106-132 2-28 (213)
359 1jbk_A CLPB protein; beta barr 96.2 0.0035 1.2E-07 51.1 4.2 28 105-132 41-68 (195)
360 1ko7_A HPR kinase/phosphatase; 96.2 0.002 6.9E-08 58.6 2.8 33 96-129 134-166 (314)
361 2hxs_A RAB-26, RAS-related pro 96.2 0.0025 8.6E-08 51.7 3.2 24 108-131 7-30 (178)
362 2cxx_A Probable GTP-binding pr 96.2 0.0018 6.3E-08 53.1 2.4 23 109-131 3-25 (190)
363 2ocp_A DGK, deoxyguanosine kin 96.2 0.0029 9.9E-08 54.9 3.7 27 106-132 1-27 (241)
364 2efe_B Small GTP-binding prote 96.2 0.003 1E-07 51.4 3.6 23 109-131 14-36 (181)
365 1vg8_A RAS-related protein RAB 96.2 0.0029 1E-07 52.8 3.6 24 108-131 9-32 (207)
366 1nrj_B SR-beta, signal recogni 96.2 0.0028 9.7E-08 53.5 3.5 24 108-131 13-36 (218)
367 1ltq_A Polynucleotide kinase; 96.2 0.0026 8.9E-08 56.9 3.4 24 108-131 3-26 (301)
368 3h4m_A Proteasome-activating n 96.2 0.0029 9.9E-08 56.0 3.7 29 104-132 48-76 (285)
369 2dby_A GTP-binding protein; GD 96.2 0.0026 8.8E-08 59.3 3.5 23 109-131 3-25 (368)
370 3ld9_A DTMP kinase, thymidylat 96.2 0.0038 1.3E-07 54.0 4.3 28 105-132 19-46 (223)
371 1m7b_A RND3/RHOE small GTP-bin 96.2 0.0027 9.3E-08 52.2 3.3 24 108-131 8-31 (184)
372 2bme_A RAB4A, RAS-related prot 96.2 0.0027 9.4E-08 51.9 3.3 24 108-131 11-34 (186)
373 2bov_A RAla, RAS-related prote 96.2 0.003 1E-07 52.6 3.5 24 108-131 15-38 (206)
374 1ypw_A Transitional endoplasmi 96.2 0.0015 5E-08 67.2 1.9 33 100-132 504-536 (806)
375 3kkq_A RAS-related protein M-R 96.2 0.0031 1.1E-07 51.5 3.5 24 108-131 19-42 (183)
376 3tmk_A Thymidylate kinase; pho 96.2 0.0035 1.2E-07 54.0 3.9 28 105-132 3-30 (216)
377 3bwd_D RAC-like GTP-binding pr 96.2 0.0036 1.2E-07 51.0 3.8 24 107-130 8-31 (182)
378 2gf9_A RAS-related protein RAB 96.2 0.0032 1.1E-07 52.0 3.5 23 109-131 24-46 (189)
379 1wf3_A GTP-binding protein; GT 96.2 0.0024 8.3E-08 57.7 3.0 23 109-131 9-31 (301)
380 3tkl_A RAS-related protein RAB 96.1 0.0032 1.1E-07 52.0 3.5 23 109-131 18-40 (196)
381 3dm5_A SRP54, signal recogniti 96.1 0.0047 1.6E-07 58.9 5.1 27 106-132 99-125 (443)
382 3sr0_A Adenylate kinase; phosp 96.1 0.0035 1.2E-07 53.5 3.8 24 109-132 2-25 (206)
383 1l8q_A Chromosomal replication 96.1 0.0028 9.4E-08 57.5 3.3 27 106-132 36-62 (324)
384 2fg5_A RAB-22B, RAS-related pr 96.1 0.0031 1E-07 52.3 3.3 23 109-131 25-47 (192)
385 3iby_A Ferrous iron transport 96.1 0.0024 8.1E-08 56.4 2.7 23 109-131 3-25 (256)
386 2cjw_A GTP-binding protein GEM 96.1 0.0034 1.1E-07 52.4 3.5 23 109-131 8-30 (192)
387 1mh1_A RAC1; GTP-binding, GTPa 96.1 0.0034 1.2E-07 51.2 3.5 23 108-130 6-28 (186)
388 2gf0_A GTP-binding protein DI- 96.1 0.0032 1.1E-07 52.1 3.3 23 108-130 9-31 (199)
389 3zvl_A Bifunctional polynucleo 96.1 0.0031 1.1E-07 59.7 3.5 30 102-131 253-282 (416)
390 3iev_A GTP-binding protein ERA 96.1 0.0028 9.5E-08 57.5 3.0 24 108-131 11-34 (308)
391 1moz_A ARL1, ADP-ribosylation 96.1 0.0024 8.3E-08 52.1 2.4 25 105-129 16-40 (183)
392 2r62_A Cell division protease 96.1 0.0016 5.4E-08 57.3 1.3 34 97-132 36-69 (268)
393 3t5g_A GTP-binding protein RHE 96.1 0.0034 1.2E-07 51.2 3.3 22 109-130 8-29 (181)
394 3dz8_A RAS-related protein RAB 96.1 0.0034 1.2E-07 52.0 3.3 23 109-131 25-47 (191)
395 3oes_A GTPase rhebl1; small GT 96.1 0.0033 1.1E-07 52.5 3.3 26 106-131 23-48 (201)
396 1z06_A RAS-related protein RAB 96.1 0.0039 1.3E-07 51.4 3.6 24 108-131 21-44 (189)
397 2fv8_A H6, RHO-related GTP-bin 96.1 0.003 1E-07 53.1 2.9 34 98-131 16-49 (207)
398 2xtp_A GTPase IMAP family memb 96.0 0.0027 9.3E-08 55.6 2.8 25 107-131 22-46 (260)
399 2a5j_A RAS-related protein RAB 96.0 0.0039 1.3E-07 51.6 3.6 23 109-131 23-45 (191)
400 2ew1_A RAS-related protein RAB 96.0 0.0036 1.2E-07 52.8 3.3 23 109-131 28-50 (201)
401 1zd9_A ADP-ribosylation factor 96.0 0.004 1.4E-07 51.4 3.5 25 107-131 22-46 (188)
402 3reg_A RHO-like small GTPase; 96.0 0.0041 1.4E-07 51.5 3.5 24 108-131 24-47 (194)
403 2v3c_C SRP54, signal recogniti 96.0 0.0031 1.1E-07 60.1 3.1 31 102-132 92-124 (432)
404 3a1s_A Iron(II) transport prot 96.0 0.0033 1.1E-07 55.5 3.1 24 108-131 6-29 (258)
405 2p5s_A RAS and EF-hand domain 96.0 0.0045 1.6E-07 51.6 3.8 25 107-131 28-52 (199)
406 1ksh_A ARF-like protein 2; sma 96.0 0.0033 1.1E-07 51.6 2.9 26 105-130 16-41 (186)
407 1x3s_A RAS-related protein RAB 96.0 0.0042 1.4E-07 51.1 3.5 24 108-131 16-39 (195)
408 2atv_A RERG, RAS-like estrogen 96.0 0.0043 1.5E-07 51.5 3.6 24 107-130 28-51 (196)
409 2bcg_Y Protein YP2, GTP-bindin 96.0 0.004 1.4E-07 52.1 3.3 23 109-131 10-32 (206)
410 3cbq_A GTP-binding protein REM 95.9 0.0021 7.2E-08 53.8 1.5 23 108-130 24-46 (195)
411 1u94_A RECA protein, recombina 95.9 0.0051 1.8E-07 57.0 4.2 30 103-132 59-88 (356)
412 1zbd_A Rabphilin-3A; G protein 95.9 0.0038 1.3E-07 52.0 3.0 23 109-131 10-32 (203)
413 3cph_A RAS-related protein SEC 95.9 0.0046 1.6E-07 51.8 3.5 26 106-131 19-44 (213)
414 3c5c_A RAS-like protein 12; GD 95.9 0.0049 1.7E-07 51.0 3.6 24 108-131 22-45 (187)
415 2p65_A Hypothetical protein PF 95.9 0.0045 1.5E-07 50.4 3.3 27 106-132 42-68 (187)
416 1gwn_A RHO-related GTP-binding 95.9 0.0043 1.5E-07 52.4 3.3 24 108-131 29-52 (205)
417 2iwr_A Centaurin gamma 1; ANK 95.9 0.004 1.4E-07 50.6 2.9 24 108-131 8-31 (178)
418 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.0062 2.1E-07 53.0 4.3 28 105-132 37-64 (262)
419 3i8s_A Ferrous iron transport 95.9 0.0036 1.2E-07 55.7 2.8 24 108-131 4-27 (274)
420 1p5z_B DCK, deoxycytidine kina 95.9 0.0023 7.9E-08 56.4 1.4 28 105-132 22-49 (263)
421 2fh5_B SR-beta, signal recogni 95.9 0.0051 1.7E-07 51.8 3.5 24 108-131 8-31 (214)
422 2z4s_A Chromosomal replication 95.8 0.0046 1.6E-07 58.9 3.5 26 107-132 130-155 (440)
423 4hlc_A DTMP kinase, thymidylat 95.8 0.0064 2.2E-07 51.8 4.1 26 107-132 2-27 (205)
424 1jwy_B Dynamin A GTPase domain 95.8 0.0038 1.3E-07 56.1 2.7 24 108-131 25-48 (315)
425 1zj6_A ADP-ribosylation factor 95.8 0.0049 1.7E-07 50.7 3.2 25 106-130 15-39 (187)
426 2o52_A RAS-related protein RAB 95.8 0.0038 1.3E-07 52.3 2.5 22 109-130 27-48 (200)
427 2h17_A ADP-ribosylation factor 95.8 0.0036 1.2E-07 51.3 2.3 24 107-130 21-44 (181)
428 2i1q_A DNA repair and recombin 95.8 0.0051 1.8E-07 55.8 3.5 28 103-130 94-121 (322)
429 3t5d_A Septin-7; GTP-binding p 95.8 0.0031 1.1E-07 55.9 1.9 22 109-130 10-31 (274)
430 2gco_A H9, RHO-related GTP-bin 95.8 0.0054 1.9E-07 51.3 3.3 23 109-131 27-49 (201)
431 2hf9_A Probable hydrogenase ni 95.7 0.0054 1.8E-07 52.2 3.3 26 107-132 38-63 (226)
432 2qu8_A Putative nucleolar GTP- 95.7 0.0041 1.4E-07 53.2 2.5 24 107-130 29-52 (228)
433 2il1_A RAB12; G-protein, GDP, 95.7 0.0036 1.2E-07 52.0 2.0 23 109-131 28-50 (192)
434 4dhe_A Probable GTP-binding pr 95.7 0.002 6.8E-08 54.7 0.4 25 107-131 29-53 (223)
435 2h57_A ADP-ribosylation factor 95.7 0.0028 9.7E-08 52.3 1.3 25 107-131 21-45 (190)
436 2f7s_A C25KG, RAS-related prot 95.7 0.005 1.7E-07 52.0 2.8 22 109-130 27-48 (217)
437 2atx_A Small GTP binding prote 95.7 0.006 2.1E-07 50.4 3.3 22 109-130 20-41 (194)
438 2fu5_C RAS-related protein RAB 95.7 0.0036 1.2E-07 51.1 1.9 24 108-131 9-32 (183)
439 4bas_A ADP-ribosylation factor 95.7 0.0039 1.3E-07 51.6 2.1 25 106-130 16-40 (199)
440 2q3h_A RAS homolog gene family 95.7 0.0052 1.8E-07 51.1 2.8 25 106-130 19-43 (201)
441 3gmt_A Adenylate kinase; ssgci 95.6 0.0077 2.6E-07 52.4 3.8 26 107-132 8-33 (230)
442 2j1l_A RHO-related GTP-binding 95.6 0.0049 1.7E-07 52.2 2.5 23 108-130 35-57 (214)
443 3llu_A RAS-related GTP-binding 95.6 0.0051 1.7E-07 51.2 2.6 24 108-131 21-44 (196)
444 3p32_A Probable GTPase RV1496/ 95.6 0.012 4E-07 54.4 5.2 28 105-132 77-104 (355)
445 2hup_A RAS-related protein RAB 95.6 0.0068 2.3E-07 50.7 3.3 23 109-131 31-53 (201)
446 2orw_A Thymidine kinase; TMTK, 95.6 0.0094 3.2E-07 49.8 4.1 26 106-131 2-28 (184)
447 3def_A T7I23.11 protein; chlor 95.6 0.0057 2E-07 53.8 2.8 24 108-131 37-60 (262)
448 2zts_A Putative uncharacterize 95.6 0.012 4.1E-07 50.6 4.8 26 103-128 26-51 (251)
449 3cpj_B GTP-binding protein YPT 95.5 0.0084 2.9E-07 51.0 3.6 23 109-131 15-37 (223)
450 4gzl_A RAS-related C3 botulinu 95.5 0.0075 2.6E-07 50.6 3.3 24 107-130 30-53 (204)
451 2aka_B Dynamin-1; fusion prote 95.5 0.0055 1.9E-07 54.6 2.5 24 108-131 27-50 (299)
452 2g3y_A GTP-binding protein GEM 95.5 0.0064 2.2E-07 51.9 2.8 23 108-130 38-60 (211)
453 2b6h_A ADP-ribosylation factor 95.5 0.0055 1.9E-07 51.0 2.2 25 105-129 27-51 (192)
454 1h65_A Chloroplast outer envel 95.5 0.0064 2.2E-07 53.7 2.7 24 108-131 40-63 (270)
455 3q3j_B RHO-related GTP-binding 95.5 0.0089 3E-07 50.7 3.5 24 107-130 27-50 (214)
456 3cnl_A YLQF, putative uncharac 95.4 0.0065 2.2E-07 53.8 2.7 25 108-132 100-124 (262)
457 2yc2_C IFT27, small RAB-relate 95.4 0.0037 1.2E-07 52.1 0.8 24 107-130 20-43 (208)
458 2j0v_A RAC-like GTP-binding pr 95.4 0.0091 3.1E-07 50.1 3.3 25 107-131 9-33 (212)
459 2chg_A Replication factor C sm 95.3 0.011 3.7E-07 49.3 3.6 24 109-132 40-63 (226)
460 3pvs_A Replication-associated 95.3 0.0034 1.2E-07 60.0 0.5 33 100-132 41-75 (447)
461 3tqf_A HPR(Ser) kinase; transf 95.3 0.011 3.6E-07 49.3 3.3 32 97-129 7-38 (181)
462 3syl_A Protein CBBX; photosynt 95.3 0.012 4E-07 52.6 3.9 28 105-132 65-92 (309)
463 3n70_A Transport activator; si 95.3 0.011 3.8E-07 47.0 3.3 27 105-131 22-48 (145)
464 2v1u_A Cell division control p 95.3 0.0093 3.2E-07 54.6 3.3 28 105-132 42-69 (387)
465 4djt_A GTP-binding nuclear pro 95.2 0.0034 1.2E-07 53.0 0.2 22 109-130 13-34 (218)
466 3t15_A Ribulose bisphosphate c 95.2 0.012 4.2E-07 52.7 3.9 28 105-132 34-61 (293)
467 3l0o_A Transcription terminati 95.2 0.013 4.6E-07 54.8 4.0 34 99-132 167-200 (427)
468 2xau_A PRE-mRNA-splicing facto 95.2 0.0082 2.8E-07 61.3 2.8 63 204-266 186-257 (773)
469 1tue_A Replication protein E1; 95.1 0.012 4.1E-07 50.3 3.3 29 104-132 55-83 (212)
470 4dcu_A GTP-binding protein ENG 95.1 0.0065 2.2E-07 58.0 1.7 23 109-131 25-47 (456)
471 1m8p_A Sulfate adenylyltransfe 95.0 0.016 5.6E-07 57.0 4.3 28 105-132 394-421 (573)
472 1g8f_A Sulfate adenylyltransfe 95.0 0.015 5.2E-07 56.4 4.0 29 104-132 392-420 (511)
473 1x6v_B Bifunctional 3'-phospho 95.0 0.016 5.6E-07 57.6 4.2 26 106-131 51-76 (630)
474 1xwi_A SKD1 protein; VPS4B, AA 95.0 0.017 5.7E-07 52.6 4.0 27 105-131 43-69 (322)
475 1puj_A YLQF, conserved hypothe 95.0 0.013 4.6E-07 52.3 3.2 26 106-131 119-144 (282)
476 1xp8_A RECA protein, recombina 94.9 0.017 5.7E-07 53.8 3.9 29 103-131 70-98 (366)
477 2x77_A ADP-ribosylation factor 94.9 0.011 3.7E-07 48.6 2.4 24 106-129 21-44 (189)
478 1yrb_A ATP(GTP)binding protein 94.9 0.041 1.4E-06 47.8 6.2 27 105-131 12-38 (262)
479 2xxa_A Signal recognition part 94.9 0.035 1.2E-06 52.7 6.2 28 105-132 98-125 (433)
480 1ofh_A ATP-dependent HSL prote 94.9 0.017 5.7E-07 51.4 3.7 26 107-132 50-75 (310)
481 3gj0_A GTP-binding nuclear pro 94.8 0.011 3.7E-07 50.1 2.3 24 108-131 16-40 (221)
482 3geh_A MNME, tRNA modification 94.8 0.011 3.8E-07 56.7 2.5 28 105-132 222-249 (462)
483 2j37_W Signal recognition part 94.8 0.02 6.8E-07 55.5 4.3 28 105-132 99-126 (504)
484 3r7w_A Gtpase1, GTP-binding pr 94.8 0.014 4.9E-07 52.6 3.0 24 107-130 3-26 (307)
485 3hws_A ATP-dependent CLP prote 94.8 0.016 5.6E-07 53.3 3.5 27 106-132 50-76 (363)
486 1d2n_A N-ethylmaleimide-sensit 94.7 0.021 7.1E-07 50.2 3.9 28 105-132 62-89 (272)
487 3uk6_A RUVB-like 2; hexameric 94.7 0.019 6.5E-07 52.6 3.8 28 105-132 68-95 (368)
488 2qby_B CDC6 homolog 3, cell di 94.7 0.021 7.3E-07 52.4 3.9 26 107-132 45-70 (384)
489 2ck3_D ATP synthase subunit be 94.7 0.027 9.2E-07 54.0 4.7 33 100-132 146-178 (482)
490 2vhj_A Ntpase P4, P4; non- hyd 94.6 0.018 6.3E-07 52.6 3.3 29 102-130 118-146 (331)
491 3th5_A RAS-related C3 botulinu 93.7 0.0058 2E-07 51.1 0.0 24 107-130 30-53 (204)
492 1wxq_A GTP-binding protein; st 94.6 0.014 4.7E-07 54.9 2.5 23 109-131 2-24 (397)
493 2qgz_A Helicase loader, putati 94.6 0.024 8.1E-07 51.3 4.0 25 107-131 152-176 (308)
494 1bif_A 6-phosphofructo-2-kinas 94.6 0.024 8.2E-07 54.3 4.3 28 105-132 37-64 (469)
495 2axn_A 6-phosphofructo-2-kinas 94.6 0.024 8.4E-07 55.1 4.4 28 105-132 33-60 (520)
496 3d8b_A Fidgetin-like protein 1 94.6 0.023 8E-07 52.3 4.1 28 105-132 115-142 (357)
497 2r44_A Uncharacterized protein 94.6 0.0053 1.8E-07 55.7 -0.4 37 96-132 35-71 (331)
498 3hjn_A DTMP kinase, thymidylat 94.6 0.025 8.5E-07 47.7 3.8 24 109-132 2-25 (197)
499 3fdi_A Uncharacterized protein 94.5 0.023 7.9E-07 48.1 3.5 25 108-132 7-31 (201)
500 3eie_A Vacuolar protein sortin 94.5 0.027 9.1E-07 51.0 4.1 27 106-132 50-76 (322)
No 1
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=8.6e-43 Score=326.47 Aligned_cols=199 Identities=13% Similarity=0.163 Sum_probs=168.0
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
++|+++||+|.|++.. +|+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 3 ~~l~i~~ls~~y~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~~ 75 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTP----VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTNL 75 (359)
T ss_dssp CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCBC
T ss_pred cEEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence 3799999999999877 9999999999999999999999999999999999999 9999999998642
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++|+||+...+ +++||.+|+.++....+.+.....+++.++++.++. ..++++.+|||||||||+||+|+
T Consensus 76 ~~~~r~ig~vfQ~~~l~--p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL 153 (359)
T 3fvq_A 76 PVRERRLGYLVQEGVLF--PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARAL 153 (359)
T ss_dssp CGGGSCCEEECTTCCCC--TTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred chhhCCEEEEeCCCcCC--CCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence 24699999996433 359999999987665555555556778899999883 46788889999999999999999
Q ss_pred ccCccEEEEcCcccccChhhHHH----HHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGGVWKD----VSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~~~~----l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+.++++|++|+|+..||....+. +.++.. .+||||||++++.. |++ |++++.|++.++..
T Consensus 154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 154 APDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYR 228 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHh
Confidence 99999999999999999944333 333332 25799999999987 655 99999999988754
No 2
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=2.9e-42 Score=323.20 Aligned_cols=205 Identities=15% Similarity=0.122 Sum_probs=170.1
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
+++||+++||+|.|++......+|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~~~~~ 97 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSE 97 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECSSCCH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCH
Confidence 34589999999999753222349999999999999999999999999999999999999 9999999999653
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhh
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la 220 (313)
++.++|+||++..++ .+||.+|+.++...++.+.....+++.++|+.++. ..++++.+|||||||||+||
T Consensus 98 ~~~~~~r~~Ig~v~Q~~~l~~--~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 98 SELTKARRQIGMIFQHFNLLS--SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHHHHHHTTEEEECSSCCCCT--TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHH
T ss_pred HHHHHHhCcEEEEeCCCccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence 235999999964333 58999999998877766555556678899999983 46778889999999999999
Q ss_pred hhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+|++.++++|++|+|+..||+ .+++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~ 253 (366)
T 3tui_C 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253 (366)
T ss_dssp HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHS
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999999 44555555532 25799999999876 555 99999999888753
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.6e-42 Score=326.86 Aligned_cols=200 Identities=15% Similarity=0.150 Sum_probs=170.7
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||+|.|++.. +|+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 M~~l~~~~l~~~yg~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~ 73 (381)
T 3rlf_A 1 MASVQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPA 73 (381)
T ss_dssp -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGG
T ss_pred CCEEEEEeEEEEECCEE----EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHH
Confidence 45799999999999877 9999999999999999999999999999999999999 9999999998652
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|+||+...+ +.+||.+|+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 74 ~r~ig~VfQ~~~l~--p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~ 151 (381)
T 3rlf_A 74 ERGVGMVFQSYALY--PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAE 151 (381)
T ss_dssp GSCEEEECTTCCCC--TTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHC
T ss_pred HCCEEEEecCCcCC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcC
Confidence 24699999996433 359999999998877766655556778899999883 46788889999999999999999999
Q ss_pred ccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 227 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+++|++|+|+..||. .+++.|.++.+ .+||||||++++.. |++ |++++.|++.++..
T Consensus 152 P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~ 223 (381)
T 3rlf_A 152 PSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYH 223 (381)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHh
Confidence 999999999999998 44555555543 25799999999987 555 99999999988754
No 4
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.9e-41 Score=316.22 Aligned_cols=200 Identities=15% Similarity=0.163 Sum_probs=167.4
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||+|.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 m~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 73 (362)
T 2it1_A 1 MVEIKLENIVKKFGNFT----ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPK 73 (362)
T ss_dssp CCCEEEEEEEEESSSSE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CcEEEEEeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHh
Confidence 44699999999998776 9999999999999999999999999999999999999 9999999998643
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|++|+...+ +++||.+|+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 74 ~r~ig~v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 151 (362)
T 2it1_A 74 DRNVGLVFQNWALY--PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKE 151 (362)
T ss_dssp GTTEEEECTTCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTC
T ss_pred HCcEEEEecCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 24699999996433 358999999998766554433345678889999884 45678889999999999999999999
Q ss_pred ccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 227 HKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+++|++|+|+..||. .+++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 152 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~ 223 (362)
T 2it1_A 152 PEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYY 223 (362)
T ss_dssp CSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999 44445555432 25799999999876 554 89999999988754
No 5
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.8e-41 Score=315.31 Aligned_cols=201 Identities=16% Similarity=0.225 Sum_probs=168.2
Q ss_pred CCCeEEEccceeEc-cccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----
Q 021380 74 EIPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 74 ~~~~l~v~~ls~~y-~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---- 148 (313)
+.++|+++||+|.| ++.. +|+||||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 11 ~~~~l~~~~l~~~y~g~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~ 83 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGAR----SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTDLP 83 (355)
T ss_dssp CCEEEEEEEEEECCTTSTT----CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCC
T ss_pred CCceEEEEEEEEEEcCCCE----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCcCC
Confidence 44589999999999 7766 9999999999999999999999999999999999999 9999999998643
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcc
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~ 224 (313)
.+.++|++|+...+ +.+||.+|+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+|++
T Consensus 84 ~~~r~ig~v~Q~~~l~--~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 84 PQKRNVGLVFQNYALF--QHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALA 161 (355)
T ss_dssp GGGSSEEEECGGGCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred hhhCcEEEEecCcccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 24699999995433 358999999998766554433445678889999883 467788899999999999999999
Q ss_pred cCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 225 LQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
.++++|++|||+..||.. +++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 235 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYE 235 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999994 4444544432 25799999999876 554 89999999988754
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=4e-41 Score=303.91 Aligned_cols=200 Identities=16% Similarity=0.203 Sum_probs=163.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
++||+++||++.|++.. +|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 22 ~~~l~i~~l~~~y~~~~----vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~ 94 (263)
T 2olj_A 22 LQMIDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAKDTN 94 (263)
T ss_dssp CCSEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSSTTCC
T ss_pred hheEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCcccc
Confidence 34799999999998776 9999999999999999999999999999999999999 99999999986431
Q ss_pred -----CeEEEEeccCCCCCcccCCcccCHHHHH-HhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhh
Q 021380 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 150 -----~~i~~v~q~~~~~~~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~ 221 (313)
+.++|++|+...+ +.+|+.+|+.+.. ..++.+.....+++.++++.++. ..++++.+|||||||||+||+
T Consensus 95 ~~~~~~~i~~v~Q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAr 172 (263)
T 2olj_A 95 LNKVREEVGMVFQRFNLF--PHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIAR 172 (263)
T ss_dssp HHHHHHHEEEECSSCCCC--TTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred HHHHhCcEEEEeCCCcCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHH
Confidence 2499999996433 3589999999864 33443322334567888998884 456778899999999999999
Q ss_pred hcccCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
|++.++++|++|||+..||+ .+++.|.++.+ .+|++|||++++.. |++ |++++.|+++++..
T Consensus 173 aL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 173 ALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999 44445554433 25799999999875 544 88888898887754
No 7
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.7e-41 Score=316.99 Aligned_cols=200 Identities=15% Similarity=0.171 Sum_probs=165.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||+|.|++.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 73 (359)
T 2yyz_A 1 MPSIRVVNLKKYFGKVK----AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPK 73 (359)
T ss_dssp -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred CcEEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChh
Confidence 44699999999998776 9999999999999999999999999999999999999 9999999998642
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|++|+...+ +++|+.+|+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 74 ~r~ig~v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~ 151 (359)
T 2yyz_A 74 YREVGMVFQNYALY--PHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQ 151 (359)
T ss_dssp GTTEEEECSSCCCC--TTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTC
T ss_pred hCcEEEEecCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 24699999995433 358999999987544433322334567889999883 46778889999999999999999999
Q ss_pred ccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 227 HKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+++|++|||+..||.. +++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 152 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 223 (359)
T 2yyz_A 152 PKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYD 223 (359)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999994 4444544432 25799999999876 554 89999999988754
No 8
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.5e-41 Score=308.51 Aligned_cols=201 Identities=17% Similarity=0.132 Sum_probs=167.5
Q ss_pred CeEEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 76 PVVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
++|+++||++.|++ .. +|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 6 ~~l~i~~ls~~y~~~~~----~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~~~ 78 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTH----ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSRKG 78 (275)
T ss_dssp EEEEEEEEEEECTTSCE----EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSHHH
T ss_pred cEEEEEEEEEEECCCCe----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCccccc
Confidence 47999999999975 34 8999999999999999999999999999999999999 9999999999754
Q ss_pred ----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhh
Q 021380 149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 ----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++..... .+||.+|+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+|
T Consensus 79 ~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 79 IMKLRESIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGV 157 (275)
T ss_dssp HHHHHHSEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred HHHHhCcEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHH
Confidence 1359999998632222 37999999998776665544445678889999883 4577888999999999999999
Q ss_pred cccCccEEEEcCcccccCh----hhHHHHHHhh-c---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMF-D---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE----~~~~~l~~l~-~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++.++++|++|+|+..||+ .+++.|.++. + .+|+||||++++.. |++ |++++.|++.++...
T Consensus 158 L~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999998 4555555554 2 25799999998875 555 899999999987643
No 9
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=5.6e-41 Score=316.17 Aligned_cols=200 Identities=14% Similarity=0.148 Sum_probs=162.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||+|.|++.. +|+|+||+|++|++++|+||||||||||||+|+|+++ |++|+|.++|.+.
T Consensus 9 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 81 (372)
T 1v43_A 9 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK 81 (372)
T ss_dssp CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred eeeEEEEEEEEEECCEE----EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChh
Confidence 55799999999998776 9999999999999999999999999999999999999 9999999998653
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|++|+...+ +++||.+|+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+|++.+
T Consensus 82 ~r~ig~v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~ 159 (372)
T 1v43_A 82 DRNISMVFQSYAVW--PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVE 159 (372)
T ss_dssp GGTEEEEEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTC
T ss_pred hCcEEEEecCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 24599999995433 358999999986544443333334567889998883 46788889999999999999999999
Q ss_pred ccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 227 HKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 227 a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+++|++|+|+..||.. +++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 160 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 231 (372)
T 1v43_A 160 PDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYL 231 (372)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHh
Confidence 9999999999999993 4445544432 25799999999876 554 89999999988754
No 10
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=5.9e-41 Score=316.38 Aligned_cols=200 Identities=14% Similarity=0.108 Sum_probs=167.2
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||+|.|++.. +|+||||+|++|++++|+||||||||||||+|+|+++ |++|+|.++|.+.
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~ 73 (372)
T 1g29_1 1 MAGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG 73 (372)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred CCEEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECcccccc
Confidence 45799999999998776 9999999999999999999999999999999999999 9999999998532
Q ss_pred ------CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhh
Q 021380 149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 149 ------~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la 220 (313)
.+.++|++|+...+ +++||.+|+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||
T Consensus 74 ~~~~~~~r~ig~v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalA 151 (372)
T 1g29_1 74 IFVPPKDRDIAMVFQSYALY--PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALG 151 (372)
T ss_dssp EECCGGGSSEEEECSCCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred ccCCHhHCCEEEEeCCCccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHH
Confidence 24599999995433 359999999998776654433345678889998883 46778889999999999999
Q ss_pred hhcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
+|++.++++|++|||+..||.. +++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 152 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~ 229 (372)
T 1g29_1 152 RAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYD 229 (372)
T ss_dssp HHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999999994 4444544432 25799999999876 554 89999999988754
No 11
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=6.7e-41 Score=295.92 Aligned_cols=181 Identities=15% Similarity=0.084 Sum_probs=150.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
++||+++||++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 2 ~~~l~~~~l~~~y~~~~----~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 74 (224)
T 2pcj_A 2 AEILRAENIKKVIRGYE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEK 74 (224)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCHH
T ss_pred CcEEEEEeEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCHH
Confidence 45799999999998766 9999999999999999999999999999999999999 99999999986531
Q ss_pred -------CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhh
Q 021380 150 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 150 -------~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la 220 (313)
+.++|++|++..+ +.+|+.+|+.++...++.+.....+++.++++.++. ..++++.+||||||||++||
T Consensus 75 ~~~~~~~~~i~~v~q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la 152 (224)
T 2pcj_A 75 ELSLLRNRKLGFVFQFHYLI--PELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIA 152 (224)
T ss_dssp HHHHHHHHHEEEECSSCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHH
T ss_pred HHHHHHhCcEEEEecCcccC--CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence 3599999996433 358999999987665543323334567888998884 35677889999999999999
Q ss_pred hhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTA 264 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~ 264 (313)
++++.+++++++|||+..||.. +++.|.++.+ .+|++|||++++
T Consensus 153 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 203 (224)
T 2pcj_A 153 RALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA 203 (224)
T ss_dssp HHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 9999999999999999999993 4444544432 257999999886
No 12
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.9e-41 Score=300.94 Aligned_cols=201 Identities=13% Similarity=0.080 Sum_probs=163.9
Q ss_pred CCCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----
Q 021380 74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 74 ~~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---- 149 (313)
.|++|+++||++.|++.. +|++|||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 12 ~~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~ 84 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPH 84 (256)
T ss_dssp --CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCHH
T ss_pred cCCeEEEEEEEEEECCEE----EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCccHH
Confidence 588999999999998776 9999999999999999999999999999999999999 99999999986532
Q ss_pred ---CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcc
Q 021380 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 ---~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~ 224 (313)
+.++|++|++..++ .+|+.+|+.+....++.+.....+++.++++.++. ..++++.+||||||||++||++++
T Consensus 85 ~~~~~i~~v~q~~~l~~--~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~ 162 (256)
T 1vpl_A 85 EVRKLISYLPEEAGAYR--NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALM 162 (256)
T ss_dssp HHHTTEEEECTTCCCCT--TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred HHhhcEEEEcCCCCCCC--CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 35999999965333 58999999987655443322223567788888884 346778899999999999999999
Q ss_pred cCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 225 LQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
.++++|++|+|+..||. .+++.|.++.+ .+|++|||++++.. |++ |++++.|++.++..
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999 44455555432 25799999998865 544 88888888887754
No 13
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.2e-40 Score=300.97 Aligned_cols=198 Identities=15% Similarity=0.140 Sum_probs=162.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
+|+++||++.|++.. +|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 6 ~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 78 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG 78 (262)
T ss_dssp CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred eEEEeeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEccccccccc
Confidence 699999999998776 9999999999999999999999999999999999999 99999999986532
Q ss_pred --------------CeEEEEeccCCCCCcccCCcccCHHHHH-HhcCCCCCccHHHHHHHHHHhhc--C-CCccCCCCCc
Q 021380 150 --------------DVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRN--Q-GSVYAPSFDH 211 (313)
Q Consensus 150 --------------~~i~~v~q~~~~~~~~~ltv~e~l~~~~-~~~~~~~~~~~~~~~~~l~~l~~--~-~~~~~~~LSg 211 (313)
+.++|++|+...+ +.+|+.+|+.+.. ..++.+.....+++.++++.++. . .++++.+|||
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~Q~~~l~--~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSg 156 (262)
T 1b0u_A 79 QLKVADKNQLRLLRTRLTMVFQHFNLW--SHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSG 156 (262)
T ss_dssp SEEESCHHHHHHHHHHEEEECSSCCCC--TTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCH
T ss_pred cccccChhhHHHHhcceEEEecCcccC--CCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCH
Confidence 2499999995433 3589999999854 33333322334567888999884 3 5677889999
Q ss_pred cCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCC
Q 021380 212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGK 277 (313)
Q Consensus 212 GekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~ 277 (313)
||||||+||+|++.++++|++|||+..||. .+++.|.++.+ .+|++|||++++.. |++ |++++.|+
T Consensus 157 Gq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (262)
T 1b0u_A 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236 (262)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999 34445544433 25799999999875 544 88888898
Q ss_pred hhHHHH
Q 021380 278 PPDVAK 283 (313)
Q Consensus 278 ~~e~~~ 283 (313)
+.++..
T Consensus 237 ~~~~~~ 242 (262)
T 1b0u_A 237 PEQVFG 242 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887753
No 14
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.3e-40 Score=312.07 Aligned_cols=202 Identities=14% Similarity=0.104 Sum_probs=164.7
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------ 148 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------ 148 (313)
|.+|+++||+|.|++.. ..+|+||||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 M~~l~i~~l~~~y~~~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~ 75 (353)
T 1oxx_K 1 MVRIIVKNVSKVFKKGK--VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL 75 (353)
T ss_dssp CCCEEEEEEEEEEGGGT--EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred CcEEEEEeEEEEECCEe--eeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECcccccc
Confidence 45799999999997531 017999999999999999999999999999999999999 9999999998531
Q ss_pred -----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhh
Q 021380 149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDI 221 (313)
Q Consensus 149 -----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~ 221 (313)
.+.++|++|+...+ +++|+.+|+.++...++.+.....+++.++++.++. ..++++.+|||||||||+||+
T Consensus 76 ~~~~~~r~ig~v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAr 153 (353)
T 1oxx_K 76 IVPPEDRKIGMVFQTWALY--PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALAR 153 (353)
T ss_dssp SSCGGGSCEEEEETTSCCC--TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred cCChhhCCEEEEeCCCccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 24699999996433 358999999987655444433345678889999883 467788899999999999999
Q ss_pred hcccCccEEEEcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 222 LVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 222 al~~~a~~li~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
|++.++++|++|||+..||.. +++.|.++.+ .+|+||||++++.. |++ |++++.|++.++..
T Consensus 154 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~ 230 (353)
T 1oxx_K 154 ALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (353)
T ss_dssp HHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999999999994 4445544432 25799999999876 554 89999999988754
No 15
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3e-40 Score=298.80 Aligned_cols=198 Identities=15% Similarity=0.149 Sum_probs=165.2
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
+++|+++||++.|++.. +|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 9 ~~~l~~~~l~~~~~~~~----vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~ 81 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQA----LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQPK 81 (266)
T ss_dssp CCEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCHH
T ss_pred cceEEEEeEEEEeCCee----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCHH
Confidence 46899999999999877 9999999999999999999999999999999999999 99999999997532
Q ss_pred ---CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcc
Q 021380 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVG 224 (313)
Q Consensus 150 ---~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~ 224 (313)
+.++|++|+....+ .+|+.+|+.++...+ ......+++.++++.++. ..++++.+||||||||++||+|++
T Consensus 82 ~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~ 157 (266)
T 4g1u_C 82 ALARTRAVMRQYSELAF--PFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLA 157 (266)
T ss_dssp HHHHHEEEECSCCCCCS--CCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred HHhheEEEEecCCccCC--CCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 34899999865433 489999998865433 233456678889999884 356778899999999999999999
Q ss_pred c------CccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 225 L------QHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 225 ~------~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
. ++++|++|||+..||+ .+++.|.++.+ .+|+||||++++.. |++ |++++.|+++++..
T Consensus 158 ~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 158 QLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp HTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCC
T ss_pred cccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhC
Confidence 9 9999999999999998 44555555532 24799999999876 554 89999999988753
No 16
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.5e-40 Score=295.72 Aligned_cols=200 Identities=15% Similarity=0.158 Sum_probs=156.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
||+++||++.|++......+|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~~~ 77 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL 77 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence 48999999999753222338999999999999999999999999999999999999 99999999996532
Q ss_pred -----CeEEEEeccCCCCCcccCCcccCHHHHHHhc---CCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcch
Q 021380 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 -----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~ 218 (313)
+.++|++|++..++ .+|+.+|+.++.... ..+.....+++.++++.++.. .++++.+||||||||++
T Consensus 78 ~~~~~~~i~~v~Q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~ 155 (235)
T 3tif_A 78 TKIRRDKIGFVFQQFNLIP--LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVA 155 (235)
T ss_dssp HHHHHHHEEEECTTCCCCT--TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHH
T ss_pred HHHhhccEEEEecCCccCC--CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHH
Confidence 24999999965333 489999999876543 222223345677888888843 36778899999999999
Q ss_pred hhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhHH
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~ 281 (313)
||+|++.++++|++|||+..||+ .+++.+.++.+ .+|+||||++.+.. |++ |++++.+++.++
T Consensus 156 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 156 IARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 99999999999999999999998 44555555532 25799999986422 444 777777665553
No 17
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-39 Score=290.57 Aligned_cols=197 Identities=15% Similarity=0.109 Sum_probs=158.9
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
+||+++||++.|++.. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 5 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 77 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV 77 (240)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred ceEEEEeEEEEECCee----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCCHHH
Confidence 4799999999998766 9999999999999999999999999999999999999 99999999986531
Q ss_pred ---CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---cCCCccCCCCCccCCCcchhhhhc
Q 021380 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---NQGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 150 ---~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---~~~~~~~~~LSgGekqRv~la~al 223 (313)
+.++|++|++..++ .+|+.||+.++.. .........+.+.++++.++ ...++++.+||||||||++||+++
T Consensus 78 ~~~~~i~~v~q~~~l~~--~ltv~enl~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL 154 (240)
T 1ji0_A 78 INRMGIALVPEGRRIFP--ELTVYENLMMGAY-NRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp HHHTTEEEECSSCCCCT--TSBHHHHHHGGGT-TCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred HHhCCEEEEecCCccCC--CCcHHHHHHHhhh-cCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHH
Confidence 23999999964333 4899999987531 11222233455677888773 345778889999999999999999
Q ss_pred ccCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 224 GLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+.++++|++|||+..||. .+++.|.++.+ .+|++|||++++.. |++ |++++.|++.++.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHH
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 999999999999999999 34445544432 25799999988765 544 8888888887764
No 18
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=7.5e-40 Score=306.14 Aligned_cols=193 Identities=14% Similarity=0.149 Sum_probs=161.6
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------C
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------D 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------~ 150 (313)
||+++||+|.|++. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.. +
T Consensus 1 ml~~~~l~~~y~~~-----~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r 72 (348)
T 3d31_A 1 MIEIESLSRKWKNF-----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH 72 (348)
T ss_dssp CEEEEEEEEECSSC-----EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred CEEEEEEEEEECCE-----EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhC
Confidence 48999999999752 8999999999999999999999999999999999999 99999999986532 3
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.++|++|+...+ +++|+.+|+.++...++.+. . +++.++++.++. ..++++.+|||||||||+||+|++.+++
T Consensus 73 ~ig~v~Q~~~l~--~~ltv~enl~~~~~~~~~~~--~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~ 147 (348)
T 3d31_A 73 DIAFVYQNYSLF--PHMNVKKNLEFGMRMKKIKD--P-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPK 147 (348)
T ss_dssp TCEEECTTCCCC--TTSCHHHHHHHHHHHHCCCC--H-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCS
T ss_pred cEEEEecCcccC--CCCCHHHHHHHHHHHcCCCH--H-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 599999995433 35899999999876554432 2 678889999884 4577888999999999999999999999
Q ss_pred EEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 229 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 229 ~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+|++|+|+..||. .+++.|+++.+ .+|+||||++++.. |++ |++++.|++.++.
T Consensus 148 lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 148 ILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp EEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred EEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999 44455555432 25799999999876 554 8888899988874
No 19
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=2.3e-40 Score=298.25 Aligned_cols=197 Identities=14% Similarity=0.124 Sum_probs=160.2
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
++||+++||++.|++.. +|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 5 ~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~ 77 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA 77 (257)
T ss_dssp CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred CcEEEEeeeEEEECCEe----eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence 56899999999998876 9999999999999999999999999999999999999 99999999986531
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHh--cC-----------CCCCccHHHHHHHHHHhhc--CCCccCCCCC
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RG-----------APWTFNPLLLLNCLKNLRN--QGSVYAPSFD 210 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~--~~-----------~~~~~~~~~~~~~l~~l~~--~~~~~~~~LS 210 (313)
+.++|++|++..+ +.+|+.+|+.+.... .+ .......+++.++++.++. ..++++.+||
T Consensus 78 ~~~~~~i~~v~q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS 155 (257)
T 1g6h_A 78 ELYHYGIVRTFQTPQPL--KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELS 155 (257)
T ss_dssp HHHHHTEEECCCCCGGG--GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSC
T ss_pred HHHhCCEEEEccCCccC--CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCC
Confidence 2499999996433 358999999875432 12 1222234567888898883 4577888999
Q ss_pred ccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccC
Q 021380 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTG 276 (313)
Q Consensus 211 gGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G 276 (313)
|||||||+||+|++.++++|++|||+..||+ .+++.|.++.+ .+|++|||++++.. |++ |++++.|
T Consensus 156 gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (257)
T 1g6h_A 156 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235 (257)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999 34445544433 25799999998765 554 8888888
Q ss_pred ChhH
Q 021380 277 KPPD 280 (313)
Q Consensus 277 ~~~e 280 (313)
++.+
T Consensus 236 ~~~~ 239 (257)
T 1g6h_A 236 RGEE 239 (257)
T ss_dssp ESHH
T ss_pred CHHH
Confidence 8887
No 20
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=8.2e-40 Score=297.84 Aligned_cols=200 Identities=13% Similarity=0.029 Sum_probs=159.8
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
++|+++||++.|++.. +|+||||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 20 ~~l~~~~l~~~y~~~~----vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~~ 92 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSA 92 (279)
T ss_dssp EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBCCC---CCH
T ss_pred ceEEEEeEEEEECCEE----EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEEcccccCCH
Confidence 4799999999998776 9999999999999999999999999999999999999 99999999986543
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHh----cCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchh
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~----~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~l 219 (313)
+.++|++|+....+...+|+.+|+.++... ++.+.....+++.++++.++. ..++++.+|||||||||+|
T Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~l 172 (279)
T 2ihy_A 93 ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMI 172 (279)
T ss_dssp HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHH
T ss_pred HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence 359999998543333346999999874211 111222234567788888884 4577888999999999999
Q ss_pred hhhcccCccEEEEcCcccccCh----hhHHHHHHhhc---Ce--EEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 220 DILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EK--WFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 220 a~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~--i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
|+|++.++++|++|||+..||+ .+++.|.++.+ .+ |++|||++++.. |++ |++++.|+++++.
T Consensus 173 AraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 251 (279)
T 2ihy_A 173 ARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251 (279)
T ss_dssp HHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHC
T ss_pred HHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999 34444544432 47 899999998755 554 8888888887764
No 21
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=7.4e-39 Score=289.80 Aligned_cols=199 Identities=15% Similarity=0.124 Sum_probs=160.8
Q ss_pred eEEEccceeEcc--c---cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---
Q 021380 77 VVEARCMDEVYD--A---LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~--~---~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--- 148 (313)
||+++||++.|+ + +. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~ 74 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKK----ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKKGY 74 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCHH
T ss_pred EEEEEEEEEEecCCCccccc----eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECchH
Confidence 599999999997 3 34 9999999999999999999999999999999999999 9999999999653
Q ss_pred --CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC----CCccCCCCCccCCCcchhhhh
Q 021380 149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 149 --~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++|++|++...+. .+|+.+|+.+....+ .+.....+++.++++.++.. .++++.+||||||||++||++
T Consensus 75 ~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAra 152 (266)
T 2yz2_A 75 EIRRNIGIAFQYPEDQFF-AERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASV 152 (266)
T ss_dssp HHGGGEEEECSSGGGGCC-CSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHH
T ss_pred HhhhhEEEEeccchhhcC-CCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHH
Confidence 2459999998522222 379999998754332 23333456788899998865 567788999999999999999
Q ss_pred cccCccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAKW 284 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~~ 284 (313)
++.++++|++|+|+..||. .+++.|.++.+ .+|++|||++.+.. |++ |+++..|++.++...
T Consensus 153 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 153 IVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999 34445554432 25799999998765 544 888888888877643
No 22
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=3.9e-38 Score=283.04 Aligned_cols=192 Identities=14% Similarity=0.110 Sum_probs=155.7
Q ss_pred CeEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 76 ~~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
+||+++||++.|+ +.. +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+ .+.++|
T Consensus 3 ~~l~i~~l~~~y~~~~~----vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~-----~~~i~~ 70 (253)
T 2nq2_C 3 KALSVENLGFYYQAENF----LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV-----YQSIGF 70 (253)
T ss_dssp EEEEEEEEEEEETTTTE----EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEE-----CSCEEE
T ss_pred ceEEEeeEEEEeCCCCe----EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE-----eccEEE
Confidence 3799999999998 666 9999999999999999999999999999999999999 99999984 345999
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhc-C---CCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARR-G---APWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~-~---~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
++|++..++ .+|+.+|+.++...+ + .+.....+++.++++.++. ..++++.+||||||||++||++++.+++
T Consensus 71 v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 148 (253)
T 2nq2_C 71 VPQFFSSPF--AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECK 148 (253)
T ss_dssp ECSCCCCSS--CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred EcCCCccCC--CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 999965433 479999998864322 2 1122334567888888883 3567788999999999999999999999
Q ss_pred EEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 229 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 229 ~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
+|++|||+..||. .+++.|.++.+ .+|++|||++++.. |++ |+ ++.|++.++.
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 9999999999999 34555555533 25799999999865 444 78 8888877764
No 23
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=6.6e-38 Score=274.66 Aligned_cols=179 Identities=15% Similarity=0.175 Sum_probs=149.0
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---CCeE
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---PDVA 152 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---~~~i 152 (313)
.+|+++||++.|++ . +|+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+. .+.+
T Consensus 9 ~~l~~~~ls~~y~~-~----il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~i 80 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKI 80 (214)
T ss_dssp CEEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGE
T ss_pred ceEEEEEEEEEeCC-e----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEhhhhcCcE
Confidence 47999999999987 6 9999999999999999999999999999999999999 9999999998642 3569
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCC-CccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
+|++|++..+ +.+|+.+|+.+....++. .. ..+++.++++.++... ++++.+||||||||++||++++.++++++
T Consensus 81 ~~v~q~~~~~--~~~tv~enl~~~~~~~~~-~~-~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lll 156 (214)
T 1sgw_A 81 FFLPEEIIVP--RKISVEDYLKAVASLYGV-KV-NKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYV 156 (214)
T ss_dssp EEECSSCCCC--TTSBHHHHHHHHHHHTTC-CC-CHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred EEEeCCCcCC--CCCCHHHHHHHHHHhcCC-ch-HHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999996543 348999999987655443 22 2567788999988433 67778999999999999999999999999
Q ss_pred EcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 232 VDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 232 ~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+|||+..||. .+++.|.++.+ .+|++|||++++..
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~ 198 (214)
T 1sgw_A 157 LDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD 198 (214)
T ss_dssp EESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSS
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 9999999999 34444544432 25799999988654
No 24
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=7.2e-39 Score=285.60 Aligned_cols=193 Identities=13% Similarity=0.073 Sum_probs=156.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PD 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~ 150 (313)
||+++||++.|++ +|+|+||+|++ +++||+||||||||||+|+|+|+++ |++|+|.++|.+. .+
T Consensus 1 ml~~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 70 (240)
T 2onk_A 1 MFLKVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR 70 (240)
T ss_dssp CCEEEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred CEEEEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhhC
Confidence 4789999999964 59999999999 9999999999999999999999999 9999999998542 34
Q ss_pred eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCcc
Q 021380 151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK 228 (313)
Q Consensus 151 ~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~ 228 (313)
.++|++|++..+ +.+|+.+|+.+....++. ....+++.++++.++. ..++++.+||||||||++||++++.+++
T Consensus 71 ~i~~v~q~~~l~--~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 71 GIGFVPQDYALF--PHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCBCCCSSCCCC--TTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEcCCCccC--CCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 689999996433 358999999875322221 1124567888898884 3567788999999999999999999999
Q ss_pred EEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhccCChhHHHH
Q 021380 229 VVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 229 ~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~~ 283 (313)
++++|||+..||. .+++.|.++.+ .+|++|||++++.. |++ |++++.|++.++..
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 216 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS 216 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999 44555555432 35799999998766 444 88888898888754
No 25
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=8e-38 Score=280.61 Aligned_cols=196 Identities=19% Similarity=0.070 Sum_probs=151.1
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCceeeeCCCCCC---
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP--- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl--l~~~~p~~G~i~~~~~~~~--- 149 (313)
|+||+++||++.|++.. +|+||||+|++|+++||+||||||||||+|+|+|+ ++ |++|+|.++|.+..
T Consensus 1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~~~~~ 73 (250)
T 2d2e_A 1 MSQLEIRDLWASIDGET----ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENILELS 73 (250)
T ss_dssp -CEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEECTTSC
T ss_pred CceEEEEeEEEEECCEE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEECCCCC
Confidence 45799999999998766 99999999999999999999999999999999998 77 99999999986532
Q ss_pred ------CeEEEEeccCCCCCcccCCcccCHHHHHHh-cCC--CCCccHHHHHHHHHHhhcC---CCccCCC-CCccCCCc
Q 021380 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPS-FDHGVGDP 216 (313)
Q Consensus 150 ------~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~-~~~--~~~~~~~~~~~~l~~l~~~---~~~~~~~-LSgGekqR 216 (313)
..++|++|++..++ .+|+.+|+.+.... .+. ......+++.++++.++.. .++++.+ ||||||||
T Consensus 74 ~~~~~~~~i~~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQr 151 (250)
T 2d2e_A 74 PDERARKGLFLAFQYPVEVP--GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKR 151 (250)
T ss_dssp HHHHHHTTBCCCCCCCC-CC--SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHH
T ss_pred HHHHHhCcEEEeccCCcccc--CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHH
Confidence 23789999865433 58999999876432 221 1112235677888888852 4667778 99999999
Q ss_pred chhhhhcccCccEEEEcCcccccChh----hHHHHHHhhcC---eEEEEcChHHHHH----HHH----hhhhccCChh
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ----RVL----KRHISTGKPP 279 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~---~i~vtHd~~~~~~----rvi----gr~v~~G~~~ 279 (313)
++||++++.++++|++|+|+..||.. +++.|.++.+. +|++|||++++.. |++ |++++.|++.
T Consensus 152 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 152 NEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999994 45555555332 4799999987753 444 8888888876
No 26
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=4e-37 Score=274.94 Aligned_cols=192 Identities=17% Similarity=0.155 Sum_probs=153.6
Q ss_pred eEEEccceeEc-cccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y-~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
||+++||++.| ++.. +|+||||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 1 ml~~~~l~~~y~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 73 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQ----ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLEN 73 (243)
T ss_dssp CEEEEEEEECSSSSSC----SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSC
T ss_pred CEEEEEEEEEeCCCCc----eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHH
Confidence 48999999999 5555 9999999999999999999999999999999999999 9999999998532
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--C-----------CccCCCCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--G-----------SVYAPSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~-----------~~~~~~LSgGek 214 (313)
.+.++|++|++.. +. .|+.+|+.++.. .....+.+.++++.++.. . +.++.+||||||
T Consensus 74 ~~~~i~~v~q~~~l-~~--~tv~enl~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 145 (243)
T 1mv5_A 74 WRSQIGFVSQDSAI-MA--GTIRENLTYGLE-----GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR 145 (243)
T ss_dssp CTTTCCEECCSSCC-CC--EEHHHHTTSCTT-----SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred HHhhEEEEcCCCcc-cc--ccHHHHHhhhcc-----CCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHH
Confidence 3458999999643 32 599999876421 112345567777777632 1 134569999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++||++++.+++++++|+|+..||. .+++.|.++.. .+|++|||++.+.. |++ |++++.|++.++.
T Consensus 146 qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (243)
T 1mv5_A 146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225 (243)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999 56666665543 25799999998754 444 8888899988875
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 226 ~ 226 (243)
T 1mv5_A 226 A 226 (243)
T ss_dssp H
T ss_pred h
Confidence 4
No 27
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=8.8e-38 Score=283.42 Aligned_cols=197 Identities=15% Similarity=0.116 Sum_probs=153.7
Q ss_pred CeEEEccceeEccc---cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC---
Q 021380 76 PVVEARCMDEVYDA---LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--- 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~---~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~--- 149 (313)
.+|+++||++.|++ .. +|++|||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 15 ~~l~~~~l~~~y~~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~ 87 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQ----VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQYD 87 (271)
T ss_dssp CCEEEEEEEECCTTCTTSC----CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBC
T ss_pred ceEEEEEEEEEeCCCCCce----eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEcccCC
Confidence 36999999999976 44 9999999999999999999999999999999999999 99999999996531
Q ss_pred -----CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCcc------HHHHHHHHHHh--h--cCCCccCCCCCccCC
Q 021380 150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN------PLLLLNCLKNL--R--NQGSVYAPSFDHGVG 214 (313)
Q Consensus 150 -----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~------~~~~~~~l~~l--~--~~~~~~~~~LSgGek 214 (313)
+.++|++|++.. +. .|+.+|+.++.... ..... ...+.++++.+ + ...++++.+||||||
T Consensus 88 ~~~~~~~i~~v~Q~~~l-~~--~tv~enl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~ 162 (271)
T 2ixe_A 88 HHYLHTQVAAVGQEPLL-FG--RSFRENIAYGLTRT--PTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQR 162 (271)
T ss_dssp HHHHHHHEEEECSSCCC-CS--SBHHHHHHTTCSSC--CCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHH
T ss_pred HHHHhccEEEEecCCcc-cc--ccHHHHHhhhcccC--ChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHH
Confidence 359999999643 32 59999998742211 11000 01123455555 2 234677889999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH--HHH----hhhhccCChhH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 280 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e 280 (313)
||++||++++.++++|++|+|+..||. .+++.|.++.. .+|+||||++++.. |++ |++++.|++.+
T Consensus 163 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~ 242 (271)
T 2ixe_A 163 QAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQ 242 (271)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999 45555555543 25799999998754 444 88888899888
Q ss_pred HHHH
Q 021380 281 VAKW 284 (313)
Q Consensus 281 ~~~~ 284 (313)
+...
T Consensus 243 l~~~ 246 (271)
T 2ixe_A 243 LMER 246 (271)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 7643
No 28
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=4.6e-37 Score=278.15 Aligned_cols=199 Identities=16% Similarity=0.042 Sum_probs=154.8
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHH--hcccCCCCceeeeCCCCCC---
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPP--- 149 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl--l~~~~p~~G~i~~~~~~~~--- 149 (313)
+++|+++||++.|+++. +|+||||+|++|+++||+||||||||||+|+|+|+ ++ |++|+|.++|.+..
T Consensus 18 ~~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~i~~~~ 90 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKA----ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLALS 90 (267)
T ss_dssp --CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEEGGGSC
T ss_pred CceEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECCcCC
Confidence 45799999999998766 99999999999999999999999999999999999 46 89999999986521
Q ss_pred ------CeEEEEeccCCCCCcccCCcccCHHHHHH-h---cCCC---CCccHHHHHHHHHHhhcC---CCccCC-CCCcc
Q 021380 150 ------DVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAP---WTFNPLLLLNCLKNLRNQ---GSVYAP-SFDHG 212 (313)
Q Consensus 150 ------~~i~~v~q~~~~~~~~~ltv~e~l~~~~~-~---~~~~---~~~~~~~~~~~l~~l~~~---~~~~~~-~LSgG 212 (313)
..++|++|++..++ .+|+.+|+.+... . ++.. .....+++.++++.++.. .++++. +||||
T Consensus 91 ~~~~~~~~i~~v~Q~~~l~~--~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgG 168 (267)
T 2zu0_C 91 PEDRAGEGIFMAFQYPVEIP--GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGG 168 (267)
T ss_dssp HHHHHHHTEEEECSSCCCCT--TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHH
T ss_pred HHHHhhCCEEEEccCccccc--cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHH
Confidence 13899999965433 5899999877542 1 2221 111234677888888853 356666 59999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhcC---eEEEEcChHHHHH----HHH----hhhhccCC
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFDE---KWFIEVDLDTAMQ----RVL----KRHISTGK 277 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~~---~i~vtHd~~~~~~----rvi----gr~v~~G~ 277 (313)
||||++||+|++.++++|++|||+..||... ++.|.++.+. +|++|||++++.. |++ |++++.|+
T Consensus 169 q~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 248 (267)
T 2zu0_C 169 EKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248 (267)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999944 4444444332 4799999987642 444 88888888
Q ss_pred hhHHH
Q 021380 278 PPDVA 282 (313)
Q Consensus 278 ~~e~~ 282 (313)
++++.
T Consensus 249 ~~~~~ 253 (267)
T 2zu0_C 249 FTLVK 253 (267)
T ss_dssp TTHHH
T ss_pred HHHHh
Confidence 87764
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=4.9e-37 Score=282.51 Aligned_cols=192 Identities=13% Similarity=0.094 Sum_probs=152.3
Q ss_pred eEEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
.|+++||++.|++ .. +|+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 53 ~i~~~~vs~~y~~~~~----vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i~~~~~~~ 125 (306)
T 3nh6_A 53 RIEFENVHFSYADGRE----TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQAS 125 (306)
T ss_dssp CEEEEEEEEESSTTCE----EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEETTSBCHHH
T ss_pred eEEEEEEEEEcCCCCc----eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEcccCCHHH
Confidence 5999999999963 44 9999999999999999999999999999999999999 99999999997643
Q ss_pred --CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------C----CCccCCCCCccCC
Q 021380 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVG 214 (313)
Q Consensus 150 --~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~LSgGek 214 (313)
+.++|++|++..+ . .|+++|+.++... ...+.+.+.++.++. + ......+||||||
T Consensus 126 ~r~~i~~v~Q~~~lf-~--~Tv~eNi~~~~~~------~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqr 196 (306)
T 3nh6_A 126 LRSHIGVVPQDTVLF-N--DTIADNIRYGRVT------AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEK 196 (306)
T ss_dssp HHHTEEEECSSCCCC-S--EEHHHHHHTTSTT------CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHH
T ss_pred HhcceEEEecCCccC-c--ccHHHHHHhhccc------CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHH
Confidence 3599999997543 2 5999999865321 122334444443321 1 1234569999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++||+|++.++++|++|+|+..||.. +++.|.++.. .+|+||||++.+.. |++ |++++.|++.++.
T Consensus 197 QRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~ 276 (306)
T 3nh6_A 197 QRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALL 276 (306)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999994 4444444433 25799999999876 555 9999999999887
Q ss_pred HH
Q 021380 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 277 ~~ 278 (306)
T 3nh6_A 277 SR 278 (306)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 30
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1e-36 Score=272.91 Aligned_cols=190 Identities=16% Similarity=0.185 Sum_probs=149.7
Q ss_pred eEEEccceeEc--cccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 77 VVEARCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 77 ~l~v~~ls~~y--~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
-|+++||++.| ++.. +|++|||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+..
T Consensus 7 ~~~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~~~~~~~~ 79 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPV----ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPN 79 (247)
T ss_dssp EEEEEEEEEESSTTSCE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHH
T ss_pred ceeEEEEEEEeCCCCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHH
Confidence 48999999999 3455 9999999999999999999999999999999999999 99999999996532
Q ss_pred ---CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc-------------CCCccCCCCCccC
Q 021380 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGV 213 (313)
Q Consensus 150 ---~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~LSgGe 213 (313)
+.++|++|++.. +. .|+.+|+.++. + ....+++.++++.++. ..+.++.+|||||
T Consensus 80 ~~~~~i~~v~Q~~~l-~~--~tv~enl~~~~-----~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 150 (247)
T 2ff7_A 80 WLRRQVGVVLQDNVL-LN--RSIIDNISLAN-----P-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQ 150 (247)
T ss_dssp HHHHHEEEECSSCCC-TT--SBHHHHHTTTC-----T-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHH
T ss_pred HHHhcEEEEeCCCcc-cc--ccHHHHHhccC-----C-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHH
Confidence 359999999653 32 59999987641 1 1223445555555542 1234567999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~ 281 (313)
|||++||++++.++++|++|+|+..||.. +++.|.++.. .+|++|||++.+.. |++ |++++.|++.++
T Consensus 151 ~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l 230 (247)
T 2ff7_A 151 RQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKEL 230 (247)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999993 4444444432 25799999997754 444 888888988776
Q ss_pred H
Q 021380 282 A 282 (313)
Q Consensus 282 ~ 282 (313)
.
T Consensus 231 ~ 231 (247)
T 2ff7_A 231 L 231 (247)
T ss_dssp H
T ss_pred H
Confidence 4
No 31
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.3e-36 Score=274.31 Aligned_cols=190 Identities=15% Similarity=0.121 Sum_probs=156.3
Q ss_pred eEEEccceeEccc----cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC----
Q 021380 77 VVEARCMDEVYDA----LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~----~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---- 148 (313)
||+++||++.|++ +. +|+++||+|+ |++++|+||||||||||+|+|+|++ |++|+|.++|.+.
T Consensus 1 ml~~~~l~~~y~~~~~~~~----il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~ 71 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERF----SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIR 71 (263)
T ss_dssp CEEEEEEEEEEEEETTEEE----EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCS
T ss_pred CEEEEEEEEEeCCCCccce----eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchH
Confidence 4899999999986 55 9999999999 9999999999999999999999987 8999999998432
Q ss_pred -CCeEE-EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhc
Q 021380 149 -PDVAT-VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 149 -~~~i~-~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al 223 (313)
.+.++ |++|++.. .+|+.+|+.+....+ ....+++.++++.++.. .++++.+||||||||++||+++
T Consensus 72 ~~~~i~~~v~Q~~~l----~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL 143 (263)
T 2pjz_A 72 NYIRYSTNLPEAYEI----GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLAL 143 (263)
T ss_dssp CCTTEEECCGGGSCT----TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHH
T ss_pred HhhheEEEeCCCCcc----CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 34689 99999643 489999998875443 22456678889988854 4567889999999999999999
Q ss_pred ccCccEEEEcCcccccChhh----HHHHHHhhcCeEEEEcChHHHHH----HHH----hhhhccCChhHHHH
Q 021380 224 GLQHKVVIVDGNYLFLDGGV----WKDVSSMFDEKWFIEVDLDTAMQ----RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 224 ~~~a~~li~d~~~llLDE~~----~~~l~~l~~~~i~vtHd~~~~~~----rvi----gr~v~~G~~~e~~~ 283 (313)
+.+++++++|+|+..||... ++.|.++.+.+|++|||++++.. |++ |++++.|+++++..
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 144 ASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp HTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred HhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999944 44444444446799999988754 333 88888888887754
No 32
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=4e-37 Score=273.92 Aligned_cols=190 Identities=11% Similarity=0.100 Sum_probs=147.8
Q ss_pred CCeEEEccceeEcc--ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeE
Q 021380 75 IPVVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 152 (313)
Q Consensus 75 ~~~l~v~~ls~~y~--~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i 152 (313)
|.+|+++||++.|+ +.. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|. +
T Consensus 1 M~~l~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~-----i 68 (237)
T 2cbz_A 1 MNSITVRNATFTWARSDPP----TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKGS-----V 68 (237)
T ss_dssp -CCEEEEEEEEESCTTSCC----SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECSC-----E
T ss_pred CCeEEEEEEEEEeCCCCCc----eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCE-----E
Confidence 45799999999997 345 9999999999999999999999999999999999999 99999999883 8
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHH---HHHhhcC-------CCccCCCCCccCCCcchhhhh
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---LKNLRNQ-------GSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~---l~~l~~~-------~~~~~~~LSgGekqRv~la~a 222 (313)
+|++|++. ++ .+|+.+|+.+... .. ......+.+. ++.++.. .++++.+||||||||++||++
T Consensus 69 ~~v~Q~~~-~~--~~tv~enl~~~~~---~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAra 141 (237)
T 2cbz_A 69 AYVPQQAW-IQ--NDSLRENILFGCQ---LE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA 141 (237)
T ss_dssp EEECSSCC-CC--SEEHHHHHHTTSC---CC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHH
T ss_pred EEEcCCCc-CC--CcCHHHHhhCccc---cC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHH
Confidence 99999964 33 4799999976421 11 1112222222 2223211 245677999999999999999
Q ss_pred cccCccEEEEcCcccccChhhHHHHHHhh-------c--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMF-------D--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~~~~l~~l~-------~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++.+++++++|+|+..||....+.+.+++ . .+|++|||++.+.. |++ |++++.|++.++..
T Consensus 142 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 142 VYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHH
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhh
Confidence 99999999999999999996666555544 1 24799999987643 444 88888898888754
No 33
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=8.9e-37 Score=273.47 Aligned_cols=187 Identities=19% Similarity=0.144 Sum_probs=152.7
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
||+++||++. . +|+|+||+|++|++++|+||||||||||+|+|+|+++ |+ |+|.++|.+.
T Consensus 4 ~l~~~~l~~~----~----vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~~~ 71 (249)
T 2qi9_C 4 VMQLQDVAES----T----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSATKL 71 (249)
T ss_dssp EEEEEEEEET----T----TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHHHH
T ss_pred EEEEEceEEE----E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHHHH
Confidence 7999999987 4 9999999999999999999999999999999999999 99 9999998653
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
.+.++|++|+...++ .+|+.+|+.+... .. . ..+++.++++.++. ..++++.+||||||||++||++++.+
T Consensus 72 ~~~i~~v~q~~~~~~--~~tv~e~l~~~~~-~~---~-~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 72 ALHRAYLSQQQTPPF--ATPVWHYLTLHQH-DK---T-RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp HHHEEEECSCCCCCT--TCBHHHHHHTTCS-ST---T-CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred hceEEEECCCCccCC--CCcHHHHHHHhhc-cC---C-cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 135999999965332 4899999876421 11 1 25667888898883 35677889999999999999999999
Q ss_pred cc-------EEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH---HHH----hhhhccCChhHHH
Q 021380 227 HK-------VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ---RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 227 a~-------~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~---rvi----gr~v~~G~~~e~~ 282 (313)
++ +|++|||+..||. .+++.|.++.+ .+|++|||++++.. |++ |++++.|.++++.
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99 9999999999999 44555555432 25799999998865 444 8888888887764
No 34
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3.1e-35 Score=260.40 Aligned_cols=186 Identities=11% Similarity=0.123 Sum_probs=145.8
Q ss_pred CeEEEccceeEcc--ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEE
Q 021380 76 PVVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153 (313)
Q Consensus 76 ~~l~v~~ls~~y~--~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~ 153 (313)
.+|+++||++.|+ +.. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++| .++
T Consensus 5 ~~l~~~~l~~~y~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g-----~i~ 72 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RIS 72 (229)
T ss_dssp EEEEEEEEEECSSTTSCC----SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEECS-----CEE
T ss_pred ceEEEEEEEEEeCCCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEECC-----EEE
Confidence 4799999999995 344 9999999999999999999999999999999999999 9999999988 389
Q ss_pred EEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------c----CCCccCCCCCccCCCcchhh
Q 021380 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------N----QGSVYAPSFDHGVGDPVEDD 220 (313)
Q Consensus 154 ~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~----~~~~~~~~LSgGekqRv~la 220 (313)
|++|++.. +. .|+.+|+.++.. . ......+.++.++ . ..+.++.+||||||||++||
T Consensus 73 ~v~q~~~~-~~--~tv~enl~~~~~-----~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lA 142 (229)
T 2pze_A 73 FCSQFSWI-MP--GTIKENIIFGVS-----Y--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 142 (229)
T ss_dssp EECSSCCC-CS--BCHHHHHHTTSC-----C--CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHH
T ss_pred EEecCCcc-cC--CCHHHHhhccCC-----c--ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 99999653 32 499999876411 1 1112222322222 1 11234579999999999999
Q ss_pred hhcccCccEEEEcCcccccChhhHHHHHHh-hc------CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSM-FD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 221 ~al~~~a~~li~d~~~llLDE~~~~~l~~l-~~------~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++++.+++++++|+|+..||....+.+.++ .. .+|++|||++.+.. |++ |++++.|++.++..
T Consensus 143 ral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 218 (229)
T 2pze_A 143 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 218 (229)
T ss_dssp HHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999777777663 21 24799999988754 444 88888888877643
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.3e-36 Score=283.36 Aligned_cols=190 Identities=14% Similarity=0.137 Sum_probs=152.2
Q ss_pred CeEEEccceeEc--cccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC----
Q 021380 76 PVVEARCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP---- 149 (313)
Q Consensus 76 ~~l~v~~ls~~y--~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~---- 149 (313)
..|+++||+|.| ++.. +|+||||+|++||+++|+||||||||||+|+|+|++ +++|+|.++|.+..
T Consensus 18 ~~i~~~~l~~~y~~~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~----~~~G~I~i~G~~i~~~~~ 89 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNA----ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGEIQIDGVSWDSITL 89 (390)
T ss_dssp CCEEEEEEEEESSSSSCC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS----EEEEEEEESSCBTTSSCH
T ss_pred CeEEEEEEEEEecCCCeE----EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC----CCCeEEEECCEECCcCCh
Confidence 469999999999 5555 999999999999999999999999999999999998 57899999997632
Q ss_pred ----CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCC-----------CCcc
Q 021380 150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPS-----------FDHG 212 (313)
Q Consensus 150 ----~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~-----------LSgG 212 (313)
+.++|++|+... +. +|+.+|+.+. .....+++.++++.++. ..++++.+ ||||
T Consensus 90 ~~~rr~ig~v~Q~~~l-f~--~tv~enl~~~-------~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGG 159 (390)
T 3gd7_A 90 EQWRKAFGVIPQKVFI-FS--GTFRKNLDPN-------AAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHG 159 (390)
T ss_dssp HHHHHTEEEESCCCCC-CS--EEHHHHHCTT-------CCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHH
T ss_pred HHHhCCEEEEcCCccc-Cc--cCHHHHhhhc-------cccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHH
Confidence 459999999643 32 6999987531 12345667788888773 33455555 9999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc------CeEEEEcChHHHHH--HHH----hhhhccCChhH
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 280 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~------~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e 280 (313)
|||||+||+|++.++++|++|+|+..||......+.+++. .+|++|||++.+.. |++ |++++.|++.+
T Consensus 160 qrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~e 239 (390)
T 3gd7_A 160 HKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILE 239 (390)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999954444444332 25799999875544 555 89999999998
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 240 l~~ 242 (390)
T 3gd7_A 240 LYH 242 (390)
T ss_dssp HHH
T ss_pred HHh
Confidence 865
No 36
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=8.9e-36 Score=268.73 Aligned_cols=194 Identities=15% Similarity=0.090 Sum_probs=149.3
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-------
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------- 148 (313)
.+|+++||++.|++.. ...+|+||||+|++|+++||+||||||||||+|+|+|+++ | +|+|.++|.+.
T Consensus 16 ~~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i~~~~~~~ 90 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNVNKYNRNS 90 (260)
T ss_dssp CCEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEGGGBCHHH
T ss_pred CeEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEhhhcCHHH
Confidence 3699999999997631 1128999999999999999999999999999999999997 7 89999998653
Q ss_pred -CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc------C-------CCccCCCCCccCC
Q 021380 149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN------Q-------GSVYAPSFDHGVG 214 (313)
Q Consensus 149 -~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~------~-------~~~~~~~LSgGek 214 (313)
.+.++|++|++.. +. .|+.+|+.++. .. ...+.+.++++.++. . .+.++.+||||||
T Consensus 91 ~~~~i~~v~Q~~~l-~~--~tv~enl~~~~-----~~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqk 161 (260)
T 2ghi_A 91 IRSIIGIVPQDTIL-FN--ETIKYNILYGK-----LD-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGER 161 (260)
T ss_dssp HHTTEEEECSSCCC-CS--EEHHHHHHTTC-----TT-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHH
T ss_pred HhccEEEEcCCCcc-cc--cCHHHHHhccC-----CC-CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHH
Confidence 2359999999653 32 59999987641 11 123344555554431 0 1345679999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++||++++.++++|++|+|+..||.. +++.|.++.+ .+|++|||++.+.. |++ |++++.|++.++.
T Consensus 162 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 162 QRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999994 4444444433 25799999987654 444 8888889988875
Q ss_pred H
Q 021380 283 K 283 (313)
Q Consensus 283 ~ 283 (313)
.
T Consensus 242 ~ 242 (260)
T 2ghi_A 242 K 242 (260)
T ss_dssp H
T ss_pred h
Confidence 4
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.98 E-value=2.4e-33 Score=279.56 Aligned_cols=193 Identities=16% Similarity=0.117 Sum_probs=153.6
Q ss_pred CeEEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----
Q 021380 76 PVVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP----- 148 (313)
Q Consensus 76 ~~l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~----- 148 (313)
.+|+++||+++|++ .. +|+|+||+|++|+++||+||||||||||+|+|+|+++ |++|+|.++|.+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~----~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~ 412 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKP----ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHDVRDYKL 412 (582)
T ss_pred CeEEEEEEEEEcCCCCcc----ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEhhhCCH
Confidence 36999999999974 44 9999999999999999999999999999999999999 9999999999653
Q ss_pred ---CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------CC----CccCCCCCcc
Q 021380 149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHG 212 (313)
Q Consensus 149 ---~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~----~~~~~~LSgG 212 (313)
++.++|++|++..+ . .|+.||+.++.. + ..+.+++.++++.++. +. .....+||||
T Consensus 413 ~~~~~~i~~v~Q~~~l~-~--~tv~eni~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgG 484 (582)
T 3b5x_A 413 TNLRRHFALVSQNVHLF-N--DTIANNIAYAAE----G-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGG 484 (582)
T ss_pred HHHhcCeEEEcCCCccc-c--ccHHHHHhccCC----C-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHH
Confidence 24699999997543 2 599999987421 1 1234556666665542 11 2245699999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhH
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPD 280 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e 280 (313)
||||++||+|++.+++++++|||+..||.. +.+.+.++.+ .+|+||||++.+.. |++ |++++.|++++
T Consensus 485 q~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 564 (582)
T 3b5x_A 485 QRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHAD 564 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999994 4444444432 25799999998765 554 89999999888
Q ss_pred HHH
Q 021380 281 VAK 283 (313)
Q Consensus 281 ~~~ 283 (313)
+..
T Consensus 565 l~~ 567 (582)
T 3b5x_A 565 LLA 567 (582)
T ss_pred HHh
Confidence 754
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.97 E-value=5.7e-33 Score=276.85 Aligned_cols=193 Identities=12% Similarity=0.108 Sum_probs=153.7
Q ss_pred eEEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-----
Q 021380 77 VVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP----- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~----- 149 (313)
+|+++||++.|++ .. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 341 ~i~~~~v~~~y~~~~~~----~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~~~ 413 (582)
T 3b60_A 341 DLEFRNVTFTYPGREVP----ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLA 413 (582)
T ss_dssp CEEEEEEEECSSSSSCC----SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHH
T ss_pred cEEEEEEEEEcCCCCCc----cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccCHH
Confidence 6999999999974 44 9999999999999999999999999999999999999 99999999996542
Q ss_pred ---CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc-------------CCCccCCCCCccC
Q 021380 150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGV 213 (313)
Q Consensus 150 ---~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~LSgGe 213 (313)
+.++|++|++..+ . .|+.||+.++.. + ..+.+++.++++.++. .......+|||||
T Consensus 414 ~~~~~i~~v~Q~~~l~-~--~tv~eni~~~~~----~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq 485 (582)
T 3b60_A 414 SLRNQVALVSQNVHLF-N--DTVANNIAYART----E-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ 485 (582)
T ss_dssp HHHHTEEEECSSCCCC-S--SBHHHHHHTTTT----S-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred HHHhhCeEEccCCcCC-C--CCHHHHHhccCC----C-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence 3599999997543 2 599999987421 1 1234556666665542 1123456999999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHH
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDV 281 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~ 281 (313)
|||++||+|++.+++++++|||+..||+. +.+.+.++.+ .+|+||||++.+.. |++ |++++.|+++++
T Consensus 486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 565 (582)
T 3b60_A 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSEL 565 (582)
T ss_dssp HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999994 4444444432 25799999998754 544 899999999888
Q ss_pred HHH
Q 021380 282 AKW 284 (313)
Q Consensus 282 ~~~ 284 (313)
...
T Consensus 566 ~~~ 568 (582)
T 3b60_A 566 LAQ 568 (582)
T ss_dssp HHH
T ss_pred HHc
Confidence 653
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.97 E-value=5.1e-33 Score=277.88 Aligned_cols=196 Identities=14% Similarity=0.124 Sum_probs=152.0
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC--------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-------- 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~-------- 149 (313)
|+++||++.|++.. ...+|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 342 i~~~~v~~~y~~~~-~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~~ 417 (595)
T 2yl4_A 342 LEFKNVHFAYPARP-EVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD---PASGTISLDGHDIRQLNPVWLR 417 (595)
T ss_dssp EEEEEEEEECSSCT-TSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC---CSEEEEEETTEETTTBCHHHHH
T ss_pred EEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCEEhhhCCHHHHH
Confidence 99999999997531 1128999999999999999999999999999999999999 99999999997542
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCCc----cCCCCCccCCCc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGDP 216 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~LSgGekqR 216 (313)
+.++|++|++.. ++ .|+.||+.++.... ...+.+++.++++.++. +.+. ...+||||||||
T Consensus 418 ~~i~~v~Q~~~l-~~--~tv~eni~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qr 491 (595)
T 2yl4_A 418 SKIGTVSQEPIL-FS--CSIAENIAYGADDP---SSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQR 491 (595)
T ss_dssp HSEEEECSSCCC-CS--SBHHHHHHTTSSST---TTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHH
T ss_pred hceEEEccCCcc-cC--CCHHHHHhhcCCCc---cccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHH
Confidence 359999999754 32 59999998742110 11345566677766542 1222 346999999999
Q ss_pred chhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++||+|++.+++++++|||+..||.+ +.+.+.++.+ .+|+||||++.+.. |++ |++++.|+++++..
T Consensus 492 v~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 570 (595)
T 2yl4_A 492 IAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLS 570 (595)
T ss_dssp HHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC---
T ss_pred HHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999994 4444444433 25799999998765 554 89999999888764
No 40
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.97 E-value=1.2e-32 Score=251.79 Aligned_cols=183 Identities=10% Similarity=0.107 Sum_probs=131.8
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEE
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v 155 (313)
++|+++||++.+ .. +|+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++| .++|+
T Consensus 39 ~~l~~~~l~~~~--~~----vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g-----~i~~v 104 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RISFC 104 (290)
T ss_dssp -----------C--CC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEECCS-----CEEEE
T ss_pred ceEEEEEEEEcC--ce----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECC-----EEEEE
Confidence 369999999864 34 9999999999999999999999999999999999999 9999999987 38999
Q ss_pred eccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------c----CCCccCCCCCccCCCcchhhhh
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------N----QGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~----~~~~~~~~LSgGekqRv~la~a 222 (313)
+|++.. +. .|+.+|+. .. .. ....+.+.++.++ . .....+.+||||||||++||++
T Consensus 105 ~Q~~~l-~~--~tv~enl~-~~---~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAra 173 (290)
T 2bbs_A 105 SQNSWI-MP--GTIKENII-GV---SY----DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARA 173 (290)
T ss_dssp CSSCCC-CS--SBHHHHHH-TT---CC----CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHH
T ss_pred eCCCcc-Cc--ccHHHHhh-Cc---cc----chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHH
Confidence 999643 32 49999986 21 11 1112222222222 1 1123457999999999999999
Q ss_pred cccCccEEEEcCcccccChhhHHHHHHh-hc------CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSM-FD------EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE~~~~~l~~l-~~------~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
++.+++++++|+|+..||....+.+.++ .. .+|++|||++.+.. |++ |+++..|++.++..
T Consensus 174 L~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 174 VYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999777777663 21 25799999988754 444 88888898888753
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=4.9e-33 Score=277.42 Aligned_cols=194 Identities=16% Similarity=0.136 Sum_probs=151.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
.|+++||+++|++.. .++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 341 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~i~g~~i~~~~~~~~ 415 (587)
T 3qf4_A 341 SVSFENVEFRYFENT--DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID---PERGRVEVDELDVRTVKLKDL 415 (587)
T ss_dssp CEEEEEEEECSSSSS--CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC---CSEEEEEESSSBGGGBCHHHH
T ss_pred cEEEEEEEEEcCCCC--CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEECCEEcccCCHHHH
Confidence 599999999995321 129999999999999999999999999999999999999 99999999998742
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cC----CCccCCCCCccCCC
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~----~~~~~~~LSgGekq 215 (313)
+.++|++|++..+ . .|++||+.++. + ....+.+.+.++..+ .+ ......+|||||||
T Consensus 416 r~~i~~v~Q~~~lf-~--~tv~eni~~~~-----~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQ 486 (587)
T 3qf4_A 416 RGHISAVPQETVLF-S--GTIKENLKWGR-----E-DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQ 486 (587)
T ss_dssp HHHEEEECSSCCCC-S--EEHHHHHTTTC-----S-SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHH
T ss_pred HhheEEECCCCcCc-C--ccHHHHHhccC-----C-CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHH
Confidence 3599999997543 2 49999987642 1 122233333333322 11 13456699999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhh----HHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGV----WKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~----~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||+|++.+++++++|||+..||.+. .+.+.++.. .+|+||||++.+.. |++ |++++.|+++|+..
T Consensus 487 rv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 487 RLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp HHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999944 444444332 25799999998765 555 99999999999875
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 567 ~ 567 (587)
T 3qf4_A 567 H 567 (587)
T ss_dssp H
T ss_pred C
Confidence 4
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=4.2e-33 Score=278.55 Aligned_cols=192 Identities=14% Similarity=0.145 Sum_probs=150.4
Q ss_pred eEEEccceeEccc-cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC------
Q 021380 77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------ 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~-~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------ 149 (313)
-|+++||++.|++ .. +|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 354 ~i~~~~v~~~y~~~~~----~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~~~ 426 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKP----VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD---VDRGQILVDGIDIRKIKRSS 426 (598)
T ss_dssp CEEEEEEECCSSSSSC----SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC---CSEEEEEETTEEGGGSCHHH
T ss_pred eEEEEEEEEECCCCCc----cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCeEEEECCEEhhhCCHHH
Confidence 4999999999974 34 9999999999999999999999999999999999999 99999999997632
Q ss_pred --CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------CCC----ccCCCCCccCC
Q 021380 150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVG 214 (313)
Q Consensus 150 --~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~LSgGek 214 (313)
+.++|++|++..+ + .|++||+.++. +. .+.+.+.+.++.++. +.+ ....+||||||
T Consensus 427 ~r~~i~~v~Q~~~lf-~--~tv~eni~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 427 LRSSIGIVLQDTILF-S--TTVKENLKYGN-----PG-ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp HHHHEEEECTTCCCC-S--SBHHHHHHSSS-----TT-CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred HHhceEEEeCCCccc-c--ccHHHHHhcCC-----CC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 3599999997543 2 59999987641 11 122233444433321 111 22358999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVA 282 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~ 282 (313)
||++||+|++.+++++++|||+..||.. +.+.+.++.+ .+|+||||++.+.. |++ |++++.|+++++.
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~ 577 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELI 577 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999984 4444444433 25799999999876 555 9999999999886
Q ss_pred HH
Q 021380 283 KW 284 (313)
Q Consensus 283 ~~ 284 (313)
..
T Consensus 578 ~~ 579 (598)
T 3qf4_B 578 QK 579 (598)
T ss_dssp HT
T ss_pred hC
Confidence 53
No 43
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.97 E-value=6e-33 Score=276.42 Aligned_cols=194 Identities=12% Similarity=0.076 Sum_probs=151.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
.|+++||+++|++.. .++|+|+||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 339 ~i~~~~v~~~y~~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~ 413 (578)
T 4a82_A 339 RIDIDHVSFQYNDNE--APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL 413 (578)
T ss_dssp CEEEEEEEECSCSSS--CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence 599999999997521 129999999999999999999999999999999999999 99999999997632
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc---------C----CCccCCCCCccCCC
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~LSgGekq 215 (313)
+.++|++|++..+ + .|++||+.++. +. ...+.+.+.++..+. + ......+|||||||
T Consensus 414 r~~i~~v~Q~~~l~-~--~tv~eni~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Q 484 (578)
T 4a82_A 414 RNQIGLVQQDNILF-S--DTVKENILLGR-----PT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQ 484 (578)
T ss_dssp HHTEEEECSSCCCC-S--SBHHHHHGGGC-----SS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHH
T ss_pred hhheEEEeCCCccC-c--ccHHHHHhcCC-----CC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHH
Confidence 3599999997543 2 49999997642 21 223444455444331 1 12344589999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhHH----HHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWK----DVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~~----~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||+|++.+|+++++|||+..||++..+ .+.++.. .+|+||||++.+.. |++ |++++.|+++++..
T Consensus 485 rv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 485 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA 564 (578)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999994433 3433332 25799999998765 555 99999999998865
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 565 ~ 565 (578)
T 4a82_A 565 K 565 (578)
T ss_dssp T
T ss_pred C
Confidence 3
No 44
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.97 E-value=3.2e-32 Score=251.48 Aligned_cols=213 Identities=20% Similarity=0.282 Sum_probs=165.8
Q ss_pred eEEEccceeEcccccccccccccccee-----------------------ecCCeEEEEECCCCCCHHHHHHHHHHHhcc
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASN-----------------------VNVKHIVGLAGPPGAGKSTLAAEVVRRINK 133 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~-----------------------i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~ 133 (313)
+|++++|++.|+ + ++++++|. +++|+++||+||||||||||+++|+|+++
T Consensus 43 ~i~~~~v~~~y~--p----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~- 115 (312)
T 3aez_A 43 QIDLLEVEEVYL--P----LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA- 115 (312)
T ss_dssp CCCHHHHHHTHH--H----HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH-
T ss_pred eEEeeehhhhhh--h----HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc-
Confidence 589999999996 2 56666654 89999999999999999999999999998
Q ss_pred cCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCC-CccCCCCCcc
Q 021380 134 IWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHG 212 (313)
Q Consensus 134 ~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~LSgG 212 (313)
|+.|. ..+++++||+++++ . |+.+|+.+. ..++.+...+.+.+.++|+.++... +.+++.||||
T Consensus 116 --~~~G~---------~~v~~v~qd~~~~~--~-t~~e~~~~~-~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G 180 (312)
T 3aez_A 116 --RWDHH---------PRVDLVTTDGFLYP--N-AELQRRNLM-HRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHL 180 (312)
T ss_dssp --TSTTC---------CCEEEEEGGGGBCC--H-HHHHHTTCT-TCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETT
T ss_pred --ccCCC---------CeEEEEecCccCCc--c-cHHHHHHHH-HhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChh
Confidence 87653 34899999976543 3 777776542 1235555667778888999888433 4678899999
Q ss_pred CCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhc----------------cC
Q 021380 213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS----------------TG 276 (313)
Q Consensus 213 ekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~----------------~G 276 (313)
|+||+++|++++.++++|++|++++++|... ..+.++++..|||+||.+.+.+|.+.|.+. .|
T Consensus 181 ~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~~~~~~~~~~g 259 (312)
T 3aez_A 181 HYDIIPGAEQVVRHPDILILEGLNVLQTGPT-LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAA 259 (312)
T ss_dssp TTEEEEEEEEEECSCSEEEEECTTTTCCCSS-CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGSTTSTTGGGTT
T ss_pred hhhhhhhHHHhccCCCEEEECCccccCCcch-HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccCcchhhhcccC
Confidence 9999999999999999999999999987311 245667788899999999888777655442 13
Q ss_pred ChhHH----HHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 277 KPPDV----AKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 277 ~~~e~----~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
-+.+. +..+|...++|+.+ ||.|++..||+||++..
T Consensus 260 ~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~ 300 (312)
T 3aez_A 260 FSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDA 300 (312)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECT
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCC
Confidence 33333 33557778889987 99999999999998754
No 45
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=8.5e-31 Score=261.38 Aligned_cols=190 Identities=15% Similarity=0.113 Sum_probs=151.4
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
..+|+++|+++.|++. .|+++||+|.+||++||+||||||||||+|+|+|+++ |++|+|.+. ..++|
T Consensus 355 ~~~l~~~~l~~~~~~~-----~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~-----~~i~~ 421 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEWD-----LTVAY 421 (607)
T ss_dssp CEEEEECCEEEECSSC-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCCC-----CCEEE
T ss_pred ceEEEEeceEEEecce-----EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEEe-----eEEEE
Confidence 4589999999999763 6899999999999999999999999999999999999 999999872 35899
Q ss_pred EeccCCCCCcccCCcccCHHHH-HHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
++|+.... ..+|+.+++... ...+ ...+.+.++++.++. ..++++.+|||||||||+||++++.++++|+
T Consensus 422 v~Q~~~~~--~~~tv~e~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLl 494 (607)
T 3bk7_A 422 KPQYIKAE--YEGTVYELLSKIDSSKL-----NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYL 494 (607)
T ss_dssp ECSSCCCC--CSSBHHHHHHHHHHHHH-----HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEE
T ss_pred EecCccCC--CCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99996432 347998876553 1111 123456778888874 4567788999999999999999999999999
Q ss_pred EcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH------hhhhccCChhHHHHH
Q 021380 232 VDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 284 (313)
Q Consensus 232 ~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi------gr~v~~G~~~e~~~~ 284 (313)
+|+|+..||.. +++.|.++.. .+|+||||++++.. |++ |+++..|++.++...
T Consensus 495 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 495 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMREG 564 (607)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred EeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHhh
Confidence 99999999994 4555555432 25799999999876 544 444567888887653
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=1.1e-30 Score=257.76 Aligned_cols=190 Identities=13% Similarity=0.085 Sum_probs=150.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
.++|+++|+++.|++. .|+++||+|.+||++||+||||||||||+|+|+|+++ |++|+|.+. ..++|
T Consensus 285 ~~~l~~~~l~~~~~~~-----~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~-----~~i~~ 351 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKIEWD-----LTVAY 351 (538)
T ss_dssp CEEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCCCCCC-----CCEEE
T ss_pred CeEEEEeeEEEEECCE-----EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEC-----ceEEE
Confidence 4589999999999763 6899999999999999999999999999999999999 999999872 35899
Q ss_pred EeccCCCCCcccCCcccCHHHH-HHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~-~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
++|+.... ..+|+.+++... ...+ . ..+.+.++++.++. ..++++.+|||||||||+||++++.++++|+
T Consensus 352 v~Q~~~~~--~~~tv~~~~~~~~~~~~--~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLl 424 (538)
T 1yqt_A 352 KPQYIKAD--YEGTVYELLSKIDASKL--N---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYL 424 (538)
T ss_dssp ECSSCCCC--CSSBHHHHHHHHHHHHH--T---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEE
T ss_pred EecCCcCC--CCCcHHHHHHhhhccCC--C---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 99996432 347887776543 1111 1 23456777787773 4567888999999999999999999999999
Q ss_pred EcCcccccChh----hHHHHHHhhc----CeEEEEcChHHHHH---HHH------hhhhccCChhHHHHH
Q 021380 232 VDGNYLFLDGG----VWKDVSSMFD----EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 284 (313)
Q Consensus 232 ~d~~~llLDE~----~~~~l~~l~~----~~i~vtHd~~~~~~---rvi------gr~v~~G~~~e~~~~ 284 (313)
+|+|+..||.. +++.|.++.. .+|+||||++++.. |++ |+++..|.+.++...
T Consensus 425 LDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 425 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 99999999994 4555555432 25799999999886 544 455567888887653
No 47
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.96 E-value=4.4e-31 Score=283.88 Aligned_cols=197 Identities=15% Similarity=0.098 Sum_probs=159.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
-|+++||+++|+++. ..++|+||||+|++|+.+||+|+||||||||+++|.|+++ |++|+|.+||.+..
T Consensus 1076 ~I~f~nVsf~Y~~~~-~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERP-EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp CEEEEEEEECCTTSC-SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTBCHHHH
T ss_pred eEEEEEEEEeCCCCC-CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhCCHHHH
Confidence 499999999997542 2239999999999999999999999999999999999999 99999999997743
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCC
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekq 215 (313)
+.+++|+|+++.+. -|+++|+.++. .+...+.+.+.+.++..+ .+.+..+ ..|||||||
T Consensus 1152 R~~i~~V~Qdp~LF~---gTIreNI~~gl----d~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQ 1224 (1321)
T 4f4c_A 1152 RSQIAIVSQEPTLFD---CSIAENIIYGL----DPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQ 1224 (1321)
T ss_dssp HTTEEEECSSCCCCS---EEHHHHHSSSS----CTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHH
T ss_pred HhheEEECCCCEeeC---ccHHHHHhccC----CCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHH
Confidence 46999999986544 49999987542 123345566666666554 2334444 379999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhHHHHHH----hhcC--eEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS----MFDE--KWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~~~l~~----l~~~--~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||++.++++|++||++.-||.+.-+.+.+ ++.. +|+|+|.++.+.. ||+ ||+++.|++++++.
T Consensus 1225 riaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1225 RIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp HHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHH
T ss_pred HHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999855444444 3332 5799999998877 666 99999999999886
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 1305 ~ 1305 (1321)
T 4f4c_A 1305 E 1305 (1321)
T ss_dssp C
T ss_pred C
Confidence 4
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=9.2e-30 Score=250.79 Aligned_cols=175 Identities=15% Similarity=0.132 Sum_probs=140.7
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
.++++++|+++.|++. .|+.+||+|++||++||+||||||||||+|+|+|+++ |++|+|.+++. .++|
T Consensus 267 ~~~l~~~~l~~~~~~~-----~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~~----~i~~ 334 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-----QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEKQ----ILSY 334 (538)
T ss_dssp CEEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSCC----CEEE
T ss_pred cceEEEcceEEEECCE-----EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCe----eeEe
Confidence 4579999999999874 5788899999999999999999999999999999999 99999998653 4899
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEE
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~ 232 (313)
++|+.+.. ..+|+.+|+..... .. .......+.++++.++ ...++++.+|||||||||+||++++.++++|++
T Consensus 335 ~~q~~~~~--~~~tv~~~l~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlL 409 (538)
T 3ozx_A 335 KPQRIFPN--YDGTVQQYLENASK--DA-LSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVL 409 (538)
T ss_dssp ECSSCCCC--CSSBHHHHHHHHCS--ST-TCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred echhcccc--cCCCHHHHHHHhhh--hc-cchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 99985432 24789988776311 11 1112344567777777 346778889999999999999999999999999
Q ss_pred cCcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH
Q 021380 233 DGNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ 266 (313)
Q Consensus 233 d~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~ 266 (313)
|+|+..||. .+++.|.++.+ .+|+||||++++..
T Consensus 410 DEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~ 451 (538)
T 3ozx_A 410 DQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDY 451 (538)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred eCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 999999999 44555555542 24799999999876
No 49
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.96 E-value=5.8e-30 Score=275.17 Aligned_cols=194 Identities=14% Similarity=0.129 Sum_probs=155.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
-|+++||+++|++.. +.++|+||||+|++|+.+||+||+|||||||+++|.|+++ |++|+|.++|.+..
T Consensus 415 ~I~~~nvsF~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~---~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 415 DITVENVHFTYPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD---VLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp CEEEEEEEECCSSST-TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHH
T ss_pred cEEEEEeeeeCCCCC-CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc---cccCcccCCCccchhccHHHH
Confidence 499999999997542 2349999999999999999999999999999999999999 99999999997643
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCCccC----CCCCccCCC
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~~~~----~~LSgGekq 215 (313)
+.++|++|+++.+. -|++||+.++. + ..+.+++.++++..+ .+.+..+ ..|||||||
T Consensus 491 r~~i~~v~Q~~~Lf~---~TI~eNI~~g~-----~-~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQ 561 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFN---CTIEENISLGK-----E-GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQ 561 (1321)
T ss_dssp HHHEEEECSSCCCCS---EEHHHHHHTTC-----T-TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHH
T ss_pred hhcccccCCcceeeC---CchhHHHhhhc-----c-cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHH
Confidence 35999999976543 59999998752 2 223455555554432 3344433 389999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||||+..+++++++|+++.-||.+ +.+.|.++.+ .+|+|||.+..+.. +++ |++++.|+.+|+..
T Consensus 562 RiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 562 RIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred HHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 999999999999999999999999984 3444444433 25899999998876 555 99999999988754
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.96 E-value=7.2e-30 Score=273.84 Aligned_cols=194 Identities=15% Similarity=0.128 Sum_probs=151.1
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC-------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP------- 149 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~------- 149 (313)
-|+++||+++|++.. ..++|+||||+|++|+++||+||||||||||+++|+|+++ |++|+|.++|.+..
T Consensus 387 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~---~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD---PLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp CEEEEEEEECCSSTT-SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred eEEEEEEEEEcCCCC-CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEHHhCCHHHH
Confidence 499999999997532 1239999999999999999999999999999999999999 99999999997632
Q ss_pred -CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHH---------hhcCC----CccCCCCCccCCC
Q 021380 150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQG----SVYAPSFDHGVGD 215 (313)
Q Consensus 150 -~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~---------l~~~~----~~~~~~LSgGekq 215 (313)
+.++|++|++..+. .|++||+.++.. ....+.+.+.++. +..+. ......|||||||
T Consensus 463 r~~i~~v~Q~~~l~~---~ti~eNi~~g~~------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Q 533 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFA---TTIAENIRYGRE------DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQ 533 (1284)
T ss_dssp HHHEEEECSSCCCCS---SCHHHHHHHHCS------SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHH
T ss_pred HhheEEEcCCCccCC---ccHHHHHhcCCC------CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHH
Confidence 35999999975433 499999987632 1122333333332 22222 2345589999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhHHHHHHhh----c--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF----D--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~----~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||+|++.++++|++|+++.-||.+....+.+.+ . .+|+|||+++.+.. |++ |++++.|+.+++..
T Consensus 534 riaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 534 RIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp HHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999985444443332 2 25799999999866 555 99999999988764
No 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.96 E-value=5e-30 Score=275.04 Aligned_cols=197 Identities=14% Similarity=0.096 Sum_probs=152.3
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-------- 148 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-------- 148 (313)
.|+++||++.|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.++|.+.
T Consensus 1030 ~i~~~~v~~~y~~~~-~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp CEEEEEEEBCCSCGG-GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSSCHHHH
T ss_pred cEEEEEEEEECCCCC-CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccCCHHHH
Confidence 599999999997542 2238999999999999999999999999999999999999 9999999999874
Q ss_pred CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh---------cCCC----ccCCCCCccCCC
Q 021380 149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFDHGVGD 215 (313)
Q Consensus 149 ~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~LSgGekq 215 (313)
++.++|++|++.. +. .|+++|+.++... .....+.+.+.++..+ .+.+ .....|||||||
T Consensus 1106 r~~i~~v~Q~~~l-~~--~ti~eNi~~~~~~----~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Q 1178 (1284)
T 3g5u_A 1106 RAQLGIVSQEPIL-FD--CSIAENIAYGDNS----RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQ 1178 (1284)
T ss_dssp TTSCEEEESSCCC-CS--SBHHHHHTCCCSS----CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHH
T ss_pred HhceEEECCCCcc-cc--ccHHHHHhccCCC----CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHH
Confidence 2469999999754 32 6999998764211 1123334444444332 1112 234589999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChhhHHHHH----Hhhc--CeEEEEcChHHHHH--HHH----hhhhccCChhHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS----SMFD--EKWFIEVDLDTAMQ--RVL----KRHISTGKPPDVAK 283 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~~~~~l~----~l~~--~~i~vtHd~~~~~~--rvi----gr~v~~G~~~e~~~ 283 (313)
|++||++++.++++|++|||+..||....+.+. +... .+|+||||++++.. |++ |++++.|+++++..
T Consensus 1179 rv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1179 RIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp HHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999994444443 3333 35799999998755 555 99999999998865
Q ss_pred H
Q 021380 284 W 284 (313)
Q Consensus 284 ~ 284 (313)
.
T Consensus 1259 ~ 1259 (1284)
T 3g5u_A 1259 Q 1259 (1284)
T ss_dssp S
T ss_pred C
Confidence 3
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=5.3e-30 Score=264.83 Aligned_cols=192 Identities=13% Similarity=0.135 Sum_probs=140.4
Q ss_pred CCeEEEccceeEccc--cccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeE
Q 021380 75 IPVVEARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVA 152 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~--~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i 152 (313)
.++|+++||++.|++ +. +|+|+||+|.+|+++||+||||||||||+|+|+|+++ |++|+|.+++.. .+
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~----iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~~~---~I 738 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKP----QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHENC---RI 738 (986)
T ss_dssp SEEEEEEEEEECCTTCSSC----SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECTTC---CE
T ss_pred CceEEEEeeEEEeCCCCce----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcCcc---ce
Confidence 458999999999975 34 8999999999999999999999999999999999999 999999998642 37
Q ss_pred EEEeccCCCCC--c------------------------------------------------------------------
Q 021380 153 TVLPMDGFHLY--L------------------------------------------------------------------ 164 (313)
Q Consensus 153 ~~v~q~~~~~~--~------------------------------------------------------------------ 164 (313)
+|++|+.+... .
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 88888632100 0
Q ss_pred ----------------ccCCcccCHHHH-------------------HHhcCCCCCccHHHHHHHHHHhhcC----CCcc
Q 021380 165 ----------------SQLDAMEDPKEA-------------------HARRGAPWTFNPLLLLNCLKNLRNQ----GSVY 205 (313)
Q Consensus 165 ----------------~~ltv~e~l~~~-------------------~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~ 205 (313)
..+++.+|+.+. ....+........++.++|+.++.. .+.+
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~ 898 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSR 898 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSC
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCC
Confidence 001111121000 0001112223345678888888853 2557
Q ss_pred CCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhhc
Q 021380 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHIS 274 (313)
Q Consensus 206 ~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v~ 274 (313)
+.+||||||||++||++++.++++|++|+|+..||......+.+.+. .+|+||||++++.. |++ |+++.
T Consensus 899 ~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~ 978 (986)
T 2iw3_A 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTP 978 (986)
T ss_dssp GGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC
T ss_pred ccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 78999999999999999999999999999999999965555555443 35799999999865 443 66665
Q ss_pred cC
Q 021380 275 TG 276 (313)
Q Consensus 275 ~G 276 (313)
.|
T Consensus 979 ~G 980 (986)
T 2iw3_A 979 SG 980 (986)
T ss_dssp --
T ss_pred eC
Confidence 55
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3.4e-28 Score=242.38 Aligned_cols=187 Identities=18% Similarity=0.217 Sum_probs=144.6
Q ss_pred ccceeEccccccccccccccceeecCC-----eEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEE
Q 021380 81 RCMDEVYDALAQRLLPTSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i~~G-----eiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v 155 (313)
.++++.|++.. .+++++||++.+| |++||+||||||||||+|+|+|+++ |++|+.. ....++|+
T Consensus 350 ~~~~~~y~~~~---~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~-----~~~~i~~~ 418 (608)
T 3j16_B 350 ASRAFSYPSLK---KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDI-----PKLNVSMK 418 (608)
T ss_dssp SSSCCEECCEE---EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCC-----CSCCEEEE
T ss_pred cceeEEecCcc---cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCc-----cCCcEEEe
Confidence 67888887532 2789999999999 7899999999999999999999999 9999742 12358999
Q ss_pred eccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEEc
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d 233 (313)
+|+....+ ..|+.+++.. ...+. ......+.++++.++ ...++++.+|||||||||+||++++.++++|++|
T Consensus 419 ~q~~~~~~--~~tv~e~~~~--~~~~~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD 492 (608)
T 3j16_B 419 PQKIAPKF--PGTVRQLFFK--KIRGQ--FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID 492 (608)
T ss_dssp CSSCCCCC--CSBHHHHHHH--HCSST--TTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred cccccccC--CccHHHHHHH--Hhhcc--cccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 99854333 3577776532 11211 123445677888887 3457788899999999999999999999999999
Q ss_pred CcccccCh----hhHHHHHHhhc----CeEEEEcChHHHHH---HHH------hhhhccCChhHHHHH
Q 021380 234 GNYLFLDG----GVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL------KRHISTGKPPDVAKW 284 (313)
Q Consensus 234 ~~~llLDE----~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi------gr~v~~G~~~e~~~~ 284 (313)
+|+..||. .+++.|.++.. .+|+||||++++.. |++ |+++..|.|.++...
T Consensus 493 EPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999998 45555555532 25799999999887 554 677889999998765
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.94 E-value=2.1e-28 Score=244.12 Aligned_cols=176 Identities=16% Similarity=0.057 Sum_probs=132.3
Q ss_pred CCeEEE--------ccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcee-----
Q 021380 75 IPVVEA--------RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS----- 141 (313)
Q Consensus 75 ~~~l~v--------~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i----- 141 (313)
+.+|++ +||++.|++.. .+|+++| +|++|+++||+||||||||||+|+|+|+++ |++|++
T Consensus 81 ~~~i~i~~l~~~~~~~ls~~yg~~~---~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~---p~~G~~~~~~~ 153 (607)
T 3bk7_A 81 FNAISIVNLPEQLDEDCVHRYGVNA---FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI---PNLCEDNDSWD 153 (607)
T ss_dssp SCCCEEEEECTTGGGSEEEECSTTC---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC---CCTTTTCCCHH
T ss_pred cceEEEecCCccccCCeEEEECCCC---eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC---CCCCccccccc
Confidence 346888 99999998641 2899999 999999999999999999999999999999 999996
Q ss_pred ----eeCCCCC----------CCeEEEEeccCCCCCcc-cCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCc
Q 021380 142 ----FDSQVKP----------PDVATVLPMDGFHLYLS-QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSV 204 (313)
Q Consensus 142 ----~~~~~~~----------~~~i~~v~q~~~~~~~~-~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~ 204 (313)
.++|... ...+++++|.....+.. ..|+.+++.. .. ..+++.++++.++. ..++
T Consensus 154 ~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~----~~-----~~~~~~~~L~~lgL~~~~~~ 224 (607)
T 3bk7_A 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK----VD-----EVGKFEEVVKELELENVLDR 224 (607)
T ss_dssp HHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHH----TC-----CSSCHHHHHHHTTCTTGGGS
T ss_pred hhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhh----hH-----HHHHHHHHHHHcCCCchhCC
Confidence 3455431 12367777763221110 1255555432 11 12346678888884 3467
Q ss_pred cCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 205 ~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
++.+|||||||||+||++++.++++|++|||+..||.. +++.|+++.+ .+|+||||++++..
T Consensus 225 ~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~ 293 (607)
T 3bk7_A 225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDY 293 (607)
T ss_dssp BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHh
Confidence 78899999999999999999999999999999999994 4555555533 25799999998765
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.94 E-value=6.2e-28 Score=238.05 Aligned_cols=173 Identities=17% Similarity=0.066 Sum_probs=127.8
Q ss_pred EEE-ccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcee---------eeCCCC
Q 021380 78 VEA-RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS---------FDSQVK 147 (313)
Q Consensus 78 l~v-~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i---------~~~~~~ 147 (313)
.++ +||+|.|++.. .+|+++| +|++||++||+||||||||||+|+|+|+++ |++|++ .++|..
T Consensus 21 ~~~~~~ls~~yg~~~---~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~~~~~~~~~~~~~~g~~ 93 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNA---FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCGDNDSWDGVIRAFRGNE 93 (538)
T ss_dssp ---CCCEEEECSTTC---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSHHHHHHHTTTST
T ss_pred hhHhcCcEEEECCcc---ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCccCcchhhhHHhhCCcc
Confidence 344 69999998641 2799999 999999999999999999999999999999 999996 345543
Q ss_pred C----------CCeEEEEeccCCCCCcc-cCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCC
Q 021380 148 P----------PDVATVLPMDGFHLYLS-QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVG 214 (313)
Q Consensus 148 ~----------~~~i~~v~q~~~~~~~~-~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGek 214 (313)
. ...+++++|.....+.. ..++.+++.. .. ..+++.++++.++. ..++++.+||||||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~----~~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGek 164 (538)
T 1yqt_A 94 LQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK----AD-----ETGKLEEVVKALELENVLEREIQHLSGGEL 164 (538)
T ss_dssp HHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH----HC-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh----hh-----HHHHHHHHHHHcCCChhhhCChhhCCHHHH
Confidence 1 12467788763222210 0144444321 11 12346778888884 35677889999999
Q ss_pred CcchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
|||+||++++.++++|++|||+..||.. +++.|.++.+ .+|+||||++++..
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~ 223 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDY 223 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9999999999999999999999999994 5555555533 25799999998865
No 56
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.93 E-value=3.2e-26 Score=204.05 Aligned_cols=197 Identities=20% Similarity=0.285 Sum_probs=130.8
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~ 175 (313)
+|+|+||++++|+++||+||||||||||+++|+|++. .+.++ ...+.++|++|+.++ . .+++.+++.+
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~--~~~~~i~~v~~d~~~-~--~l~~~~~~~~ 81 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE--QRQRKVVILSQDRFY-K--VLTAEQKAKA 81 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC--GGGCSEEEEEGGGGB-C--CCCHHHHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc--ccCCceEEEeCCcCc-c--ccCHhHhhhh
Confidence 9999999999999999999999999999999999873 33332 123458899999532 2 3687777665
Q ss_pred HHHhcCC--CCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcC
Q 021380 176 AHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253 (313)
Q Consensus 176 ~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~ 253 (313)
....+.. +...+.+.+.+.|+.+......+++.||+||+||+.+ .+++.+++++++|++.++.++ .+.++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~----~l~~~~~~ 156 (245)
T 2jeo_A 82 LKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ----EIRDMFHL 156 (245)
T ss_dssp HTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH----HHHTTCSE
T ss_pred hccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccH----HHHHhcCe
Confidence 4332222 2234556667777777666778889999999999988 467777889999998877774 34555665
Q ss_pred eE-EEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEecc
Q 021380 254 KW-FIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKS 310 (313)
Q Consensus 254 ~i-~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~ 310 (313)
.| +++|+. ....|.+.|.+..|...+.+..+|...+.+..+ |+.|.+..||+|+++
T Consensus 157 ~i~v~th~~-~~~~r~~~r~~~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~ 214 (245)
T 2jeo_A 157 RLFVDTDSD-VRLSRRVLRDVRRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPR 214 (245)
T ss_dssp EEEEECCHH-HHHHHHHHHHTC---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEES
T ss_pred EEEEECCHH-HHHHHHHHHHHHcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcC
Confidence 55 566653 333355555456676666555556655555555 999999999999943
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.93 E-value=5.8e-27 Score=242.25 Aligned_cols=184 Identities=14% Similarity=0.032 Sum_probs=139.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC--CCCeEEE
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK--PPDVATV 154 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~--~~~~i~~ 154 (313)
.|...|+++.|+++. +|+|+||+|.+|+++||+||||||||||+|+|+|- +| .|.+ ....++|
T Consensus 435 ~L~~~~ls~~yg~~~----iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG---------~i--~g~~~~~~~~~~~ 499 (986)
T 2iw3_A 435 DLCNCEFSLAYGAKI----LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANG---------QV--DGFPTQEECRTVY 499 (986)
T ss_dssp EEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHT---------CS--TTCCCTTTSCEEE
T ss_pred eeEEeeEEEEECCEE----eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC---------Cc--CCCccccceeEEE
Confidence 466679999999877 99999999999999999999999999999999961 11 1111 1123677
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCccEEE
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI 231 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~~li 231 (313)
++|+.... ...+|+.+++.+ ...+ . .+++.++++.++.. .++++.+||||||||++||++++.++++|+
T Consensus 500 v~q~~~~~-~~~ltv~e~l~~--~~~~----~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLL 571 (986)
T 2iw3_A 500 VEHDIDGT-HSDTSVLDFVFE--SGVG----T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILL 571 (986)
T ss_dssp TTCCCCCC-CTTSBHHHHHHT--TCSS----C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEE
T ss_pred Eccccccc-ccCCcHHHHHHH--hhcC----H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 77763222 235788888764 1111 1 56678889998853 467788999999999999999999999999
Q ss_pred EcCcccccChhhHHHHHHhhc----CeEEEEcChHHHHH---HHH----hhhh-ccCChhHHHH
Q 021380 232 VDGNYLFLDGGVWKDVSSMFD----EKWFIEVDLDTAMQ---RVL----KRHI-STGKPPDVAK 283 (313)
Q Consensus 232 ~d~~~llLDE~~~~~l~~l~~----~~i~vtHd~~~~~~---rvi----gr~v-~~G~~~e~~~ 283 (313)
+|+|+..||....+.+.+++. .+|+||||++++.. |++ |+++ ..|++.++..
T Consensus 572 LDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 572 LDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred EECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999954444444332 25799999999876 444 7776 5788887754
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.92 E-value=4.1e-26 Score=230.86 Aligned_cols=185 Identities=17% Similarity=0.122 Sum_probs=111.0
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHH---------------------HHHHHHhcccCCCCc-------eeeeCCCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLA---------------------AEVVRRINKIWPQKA-------SSFDSQVK 147 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLl---------------------k~L~Gll~~~~p~~G-------~i~~~~~~ 147 (313)
+|+||||+|++|+++||+||||||||||+ +++.|+.. |+.| .|.+++..
T Consensus 33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~---~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK---PDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCSEEESCCCEEEESSCC
T ss_pred ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc---CCccceeccccceEecCch
Confidence 89999999999999999999999999998 88888888 8854 44444432
Q ss_pred C----CCeEEEEeccCCC-----------------CCcccCCcccCHHHHHHhc--CCCCCccH------HHHHHHHHHh
Q 021380 148 P----PDVATVLPMDGFH-----------------LYLSQLDAMEDPKEAHARR--GAPWTFNP------LLLLNCLKNL 198 (313)
Q Consensus 148 ~----~~~i~~v~q~~~~-----------------~~~~~ltv~e~l~~~~~~~--~~~~~~~~------~~~~~~l~~l 198 (313)
. ...+++++|.... .....+|+.+|+.+..... ........ .....+++.+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 189 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQNV 189 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHHT
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHHc
Confidence 1 1223444443111 1112478999987643211 10000000 1112346666
Q ss_pred hcC---CCccCCCCCccCCCcchhhhhcccCcc--EEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHHHH
Q 021380 199 RNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTAMQ 266 (313)
Q Consensus 199 ~~~---~~~~~~~LSgGekqRv~la~al~~~a~--~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~~~ 266 (313)
+.. .++++.+|||||||||+||+|++.+++ +|++|||+..||+. +++.|.++.+ .+|+||||++++..
T Consensus 190 gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~ 269 (670)
T 3ux8_A 190 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA 269 (670)
T ss_dssp TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHH
T ss_pred CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhh
Confidence 643 467888999999999999999999888 99999999999993 4444444432 25799999997655
Q ss_pred --HHH----------hhhhccCChhHHHH
Q 021380 267 --RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 267 --rvi----------gr~v~~G~~~e~~~ 283 (313)
|++ |++++.|+++++..
T Consensus 270 ~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 270 ADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred CCEEEEecccccccCCEEEEecCHHHHhc
Confidence 432 67778888887653
No 59
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8.1e-26 Score=225.27 Aligned_cols=175 Identities=15% Similarity=0.062 Sum_probs=119.0
Q ss_pred cceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceee-----------eCCCCCC-
Q 021380 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-----------DSQVKPP- 149 (313)
Q Consensus 82 ~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~-----------~~~~~~~- 149 (313)
|++++|+... ..|++++ .+.+|+++||+||||||||||+|+|+|+++ |++|+|. +.|....
T Consensus 82 ~~~~~Y~~~~---~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~---P~~G~i~~~~~~~~~~~~~~g~~~~~ 154 (608)
T 3j16_B 82 HVTHRYSANS---FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPEWQEIIKYFRGSELQN 154 (608)
T ss_dssp TEEEECSTTS---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSSCHHHHHHHTTTSTHHH
T ss_pred CeEEEECCCc---eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC---CCCceEecccchhhhhheecChhhhh
Confidence 6788887543 1566666 689999999999999999999999999999 9999983 3332210
Q ss_pred -------Ce--EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcch
Q 021380 150 -------DV--ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 150 -------~~--i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~ 218 (313)
.. ..+.+|.....+ ..+..+................+++.++++.++. ..++++.+|||||||||+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~ 231 (608)
T 3j16_B 155 YFTKMLEDDIKAIIKPQYVDNIP---RAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFA 231 (608)
T ss_dssp HHHHHHHTSCCCEEECCCTTTHH---HHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHH
T ss_pred hhhHHHHHhhhhhhchhhhhhhh---hhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHH
Confidence 00 111222111000 0111111111111001112244678888999884 456788899999999999
Q ss_pred hhhhcccCccEEEEcCcccccChh----hHHHHHHhhcC---eEEEEcChHHHHH
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTAMQ 266 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~---~i~vtHd~~~~~~ 266 (313)
||++++.++++|++|+|+..||.. +.+.|+++... +|+||||++++..
T Consensus 232 iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~ 286 (608)
T 3j16_B 232 IGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDY 286 (608)
T ss_dssp HHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHH
T ss_pred HHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 999999999999999999999984 45555555443 5799999999876
No 60
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.1e-27 Score=231.84 Aligned_cols=187 Identities=12% Similarity=-0.010 Sum_probs=137.6
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc-e-eeeCCCCCCCeE
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQVKPPDVA 152 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G-~-i~~~~~~~~~~i 152 (313)
.+|++++||++.|+ ++||++++|++++|+||||||||||+|+|+|++. |++| + |.+++. ..+.+
T Consensus 116 ~~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg~-~~~~i 181 (460)
T 2npi_A 116 HTMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINLD-PQQPI 181 (460)
T ss_dssp CTHHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEECC-TTSCS
T ss_pred cchhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcCC-ccCCe
Confidence 45788999998885 5899999999999999999999999999999999 9999 9 999884 45668
Q ss_pred EEEeccCCCC-CcccCCcccCHHHHHHh-cCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhh--cccCcc
Q 021380 153 TVLPMDGFHL-YLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL--VGLQHK 228 (313)
Q Consensus 153 ~~v~q~~~~~-~~~~ltv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~a--l~~~a~ 228 (313)
+|++|+...+ ....+|+.+|+ ++... .+. ...+++.++++.++......+.+|||||+||+++|++ ++.+++
T Consensus 182 ~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~---~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~ 257 (460)
T 2npi_A 182 FTVPGCISATPISDILDAQLPT-WGQSLTSGA---TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQ 257 (460)
T ss_dssp SSCSSCCEEEECCSCCCTTCTT-CSCBCBSSC---CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred eeeccchhhcccccccchhhhh-cccccccCc---chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcc
Confidence 8899985221 12246888887 43221 111 1112233455556543323366999999999999999 999999
Q ss_pred E----EEEcC-cccccChhhHHHHHHhh----cCeEEEEcChH------HHHH---H-----HH-----hhhhccCChhH
Q 021380 229 V----VIVDG-NYLFLDGGVWKDVSSMF----DEKWFIEVDLD------TAMQ---R-----VL-----KRHISTGKPPD 280 (313)
Q Consensus 229 ~----li~d~-~~llLDE~~~~~l~~l~----~~~i~vtHd~~------~~~~---r-----vi-----gr~v~~G~~~e 280 (313)
+ |++|+ ++..||.. .+.|.++. ..+++|+||.+ ++.. | ++ |+++ .|++.+
T Consensus 258 i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~ 335 (460)
T 2npi_A 258 VRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVY 335 (460)
T ss_dssp HHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHH
T ss_pred cCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHH
Confidence 9 99999 99999985 44444443 24689999987 4433 5 44 6677 777766
Q ss_pred H
Q 021380 281 V 281 (313)
Q Consensus 281 ~ 281 (313)
+
T Consensus 336 ~ 336 (460)
T 2npi_A 336 K 336 (460)
T ss_dssp H
T ss_pred H
Confidence 5
No 61
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.90 E-value=4.9e-24 Score=185.23 Aligned_cols=182 Identities=32% Similarity=0.458 Sum_probs=139.0
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~ 183 (313)
.++|+++||+||||||||||+++|+|+++ |+ | ..++++++|++++.. +..+++... ...+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~---~~-g----------~~~g~v~~d~~~~~~---~~~~~~~~~-~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS---AQ-G----------LPAEVVPMDGFHLDN---RLLEPRGLL-PRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH---HT-T----------CCEEEEESGGGBCCH---HHHGGGTCG-GGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh---hc-C----------CceEEEecCCCcCCH---HHHHHhccc-ccCCCC
Confidence 57899999999999999999999999997 54 3 136888998765432 112221100 112344
Q ss_pred CCccHHHHHHHHHHhhcCCCc------cCCCCCccCCCcchhhhhcccCc-cEEEEcCcccccChhhHHHHHHhhcCeEE
Q 021380 184 WTFNPLLLLNCLKNLRNQGSV------YAPSFDHGVGDPVEDDILVGLQH-KVVIVDGNYLFLDGGVWKDVSSMFDEKWF 256 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~------~~~~LSgGekqRv~la~al~~~a-~~li~d~~~llLDE~~~~~l~~l~~~~i~ 256 (313)
..++...+.+++..+....+. ....+|+|++|++++ + ++++.|++++++||..+..+.+.++..++
T Consensus 81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~-------~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~ 153 (208)
T 3c8u_A 81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGP-------ECRVAIIEGNYLLFDAPGWRDLTAIWDVSIR 153 (208)
T ss_dssp GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECT-------TCCEEEEEESSTTBCSTTGGGGGGTCSEEEE
T ss_pred chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcC-------CCcEEEECCceeccCCchhHHHHHhcCEEEE
Confidence 455656666666666543221 223578999999998 7 99999999999999888777888888999
Q ss_pred EEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCEEecc
Q 021380 257 IEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKS 310 (313)
Q Consensus 257 vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~~~ 310 (313)
++++.+...+|++.|....|.+.+.+.+++...+.++.+|+.|.+..||+||++
T Consensus 154 vd~~~~~~~~R~~~R~~~~g~t~~~~~~~~~~~~~~~~~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 154 LEVPMADLEARLVQRWLDHGLNHDAAVARAQGNDLANARAIEAARLPADLTWPQ 207 (208)
T ss_dssp ECCCHHHHHHHHHHHHHHTTCCHHHHHHHHHTHHHHHHHHHHTTBCCCSEEEC-
T ss_pred EeCCHHHHHHHHHHHHHhcCCCHHHHHHHHHhccHHHHHHHHhCCCCCCEEeeC
Confidence 999999988888888888888878777778877888888999999999999975
No 62
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.89 E-value=6.1e-24 Score=209.33 Aligned_cols=169 Identities=14% Similarity=-0.045 Sum_probs=116.5
Q ss_pred ccceeEccccccccccccccceee-cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcee-----------eeCCCCC
Q 021380 81 RCMDEVYDALAQRLLPTSALASNV-NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-----------FDSQVKP 148 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i-~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i-----------~~~~~~~ 148 (313)
++.+.+||... ++-..|.+ ++|+++||+||||||||||+|+|+|+++ |++|+| .+.|...
T Consensus 3 ~~~~~~~~~~~-----f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~---p~~G~i~~~~~~~~~~~~~~g~~i 74 (538)
T 3ozx_A 3 GEVIHRYKVNG-----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII---PNFGDPNSKVGKDEVLKRFRGKEI 74 (538)
T ss_dssp CCEEEESSTTS-----CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC---CCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred CCCceecCCCc-----eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCccccccchhhHHhhcCCeeH
Confidence 45788898653 44344444 5999999999999999999999999999 999998 4555432
Q ss_pred C----------CeEEEEeccCCCCCc-ccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCC
Q 021380 149 P----------DVATVLPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGD 215 (313)
Q Consensus 149 ~----------~~i~~v~q~~~~~~~-~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekq 215 (313)
. ..+....|.....+. ...++.+++. ... ..+++.++++.++ ...++++.+|||||||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~----~~~-----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Q 145 (538)
T 3ozx_A 75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILT----KID-----ERGKKDEVKELLNMTNLWNKDANILSGGGLQ 145 (538)
T ss_dssp HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHH----HHC-----CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHH
T ss_pred HHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhh----cch-----hHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 1 112223332111110 0012322211 111 1123566777777 3457788899999999
Q ss_pred cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH
Q 021380 216 PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 216 Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
||+||+|++.++++|++|+|+..||.. +.+.|+++.+ .+|+||||++++..
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~ 202 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDY 202 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHh
Confidence 999999999999999999999999993 4555555533 25799999998876
No 63
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.89 E-value=2.8e-24 Score=217.37 Aligned_cols=94 Identities=18% Similarity=0.167 Sum_probs=72.2
Q ss_pred HHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCc---cEEEEcCcccccCh----hhHHHHHHhhc---CeE
Q 021380 189 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFD---EKW 255 (313)
Q Consensus 189 ~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a---~~li~d~~~llLDE----~~~~~l~~l~~---~~i 255 (313)
.+..+.+..++.. .++++.+|||||||||+||++++.++ ++|++|||+..||+ .+++.|.++.+ .+|
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi 600 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 600 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 3455667777743 35677899999999999999998765 69999999999998 44555555543 257
Q ss_pred EEEcChHHHHH--HHH----------hhhhccCChhHHH
Q 021380 256 FIEVDLDTAMQ--RVL----------KRHISTGKPPDVA 282 (313)
Q Consensus 256 ~vtHd~~~~~~--rvi----------gr~v~~G~~~e~~ 282 (313)
+||||++++.. |++ |++++.|+++++.
T Consensus 601 ~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 601 VIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp EECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHH
T ss_pred EEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHH
Confidence 99999998754 432 7888999998874
No 64
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.87 E-value=6.2e-24 Score=185.10 Aligned_cols=145 Identities=17% Similarity=0.065 Sum_probs=92.9
Q ss_pred eEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCC-----CCCCCeEEEEeccC
Q 021380 85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ-----VKPPDVATVLPMDG 159 (313)
Q Consensus 85 ~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~-----~~~~~~i~~v~q~~ 159 (313)
|+|+++. +|++| ++|++++|+||||||||||+++|+|+ + |++|+|.... ....+.++|++|+.
T Consensus 8 k~~g~~~----~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~I~~~~~~~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 8 KTLGQKH----YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQVSRIILTRPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp CSHHHHH----HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTSCSEEEEEECSCCTTCCCCSSCC--
T ss_pred CCHhHHH----HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCeeeeEEecCCchhhhcceEEecCCH
Confidence 5677766 89985 89999999999999999999999999 8 9999985310 11234578888874
Q ss_pred CCCCcccCCcccCH-HH----HHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcC
Q 021380 160 FHLYLSQLDAMEDP-KE----AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 160 ~~~~~~~ltv~e~l-~~----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~ 234 (313)
.+|+ .+ ....... .....+.++++. +. |||||++||++++.++++|++|+
T Consensus 76 ----------~enl~~~~~~~~~~~~~~---~~~~~~~~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 ----------NEKIDPYLRPLHDALRDM---VEPEVIPKLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp --------------CTTTHHHHHHHTTT---SCTTHHHHHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEECS
T ss_pred ----------HHHHHHHHHHHHHHHHHh---ccHHHHHHHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEeC
Confidence 1222 11 1111111 122345555554 21 99999999999999999999999
Q ss_pred cccccChhhHHHHHHhhc-CeEEEEcChHHHHH
Q 021380 235 NYLFLDGGVWKDVSSMFD-EKWFIEVDLDTAMQ 266 (313)
Q Consensus 235 ~~llLDE~~~~~l~~l~~-~~i~vtHd~~~~~~ 266 (313)
|+...-+.+++.|.++.. ..|++|||++++..
T Consensus 131 Pts~~~~~l~~~l~~l~~g~tiivtHd~~~~~~ 163 (208)
T 3b85_A 131 AQNTTPAQMKMFLTRLGFGSKMVVTGDITQVDL 163 (208)
T ss_dssp GGGCCHHHHHHHHTTBCTTCEEEEEEC------
T ss_pred CccccHHHHHHHHHHhcCCCEEEEECCHHHHhC
Confidence 888822255556655511 23449999998765
No 65
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.86 E-value=1.8e-21 Score=168.72 Aligned_cols=178 Identities=24% Similarity=0.335 Sum_probs=133.0
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~ 183 (313)
.++|+++||+||||||||||+++|+|++. | .++|++||.++.....+++.++..+ .++.+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~---~--------------~i~~v~~d~~~~~~~~~~~~~~~~~---~~~~~ 62 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG---E--------------RVALLPMDHYYKDLGHLPLEERLRV---NYDHP 62 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG---G--------------GEEEEEGGGCBCCCTTSCHHHHHHS---CTTSG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC---C--------------CeEEEecCccccCcccccHHHhcCC---CCCCh
Confidence 47899999999999999999999999986 4 3789999976554334565554332 12334
Q ss_pred CCccHHHHHHHHHHhhcCC--CccCCCCCccCC----CcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEE
Q 021380 184 WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVG----DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFI 257 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~--~~~~~~LSgGek----qRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~v 257 (313)
...+.+.+.+.++.++... ..+...+|+|++ ||+++ +++++.+|+++++||. +..+++.++++
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~-------~~~li~~~~ll~~de~----~~~~~d~~i~l 131 (211)
T 3asz_A 63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRP-------APVVILEGILVLYPKE----LRDLMDLKVFV 131 (211)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECC-------CSEEEEESTTTTSSHH----HHTTCSEEEEE
T ss_pred hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCC-------CcEEEEeehhhccCHH----HHHhcCEEEEE
Confidence 4456677788888877443 334558999974 57777 8999999999999974 44567888999
Q ss_pred EcChHHHHHHHHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 258 EVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 258 tHd~~~~~~rvigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
+.+.+....|.+.|.. ..|.+...+.+++.....+.++ |+.|.+..||+|+++..
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~ 188 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGG 188 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEESTT
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCCC
Confidence 9998887777776654 4677777667777766667766 89999999999998764
No 66
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.86 E-value=1.4e-22 Score=207.54 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=73.4
Q ss_pred HHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccC---ccEEEEcCcccccCh----hhHHHHHHhhcC---eE
Q 021380 189 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KW 255 (313)
Q Consensus 189 ~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~---a~~li~d~~~llLDE----~~~~~l~~l~~~---~i 255 (313)
.++.++|+.++.. .++++.+|||||+|||+||++++.+ ++++++|+|+..||. .+++.|.++.+. +|
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 4567788888853 3677889999999999999999985 699999999999998 344444444432 57
Q ss_pred EEEcChHHHHH--HHH----------hhhhccCChhHHHH
Q 021380 256 FIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 256 ~vtHd~~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
+||||++++.. |++ |++++.|+++++..
T Consensus 788 visHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~ 827 (842)
T 2vf7_A 788 AVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQ 827 (842)
T ss_dssp EECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTT
T ss_pred EEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHh
Confidence 99999999833 443 47788888887653
No 67
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.86 E-value=1.2e-22 Score=208.96 Aligned_cols=94 Identities=18% Similarity=0.185 Sum_probs=72.3
Q ss_pred HHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccC---ccEEEEcCcccccCh----hhHHHHHHhhcC---eEE
Q 021380 190 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDG----GVWKDVSSMFDE---KWF 256 (313)
Q Consensus 190 ~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~---a~~li~d~~~llLDE----~~~~~l~~l~~~---~i~ 256 (313)
+..++|+.++.. .++++.+|||||+|||+||++++.+ ++++++|+|+..||. .+++.|.++.+. +|+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 446778888853 4677889999999999999999976 499999999999999 344555554432 579
Q ss_pred EEcChHHHHH--HHH----------hhhhccCChhHHHH
Q 021380 257 IEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 257 vtHd~~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
||||++++.. |++ |++++.|+++++..
T Consensus 904 isHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~ 942 (972)
T 2r6f_A 904 IEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAE 942 (972)
T ss_dssp ECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHT
T ss_pred EcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHh
Confidence 9999998643 433 57888888887753
No 68
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.84 E-value=1.6e-21 Score=201.19 Aligned_cols=94 Identities=21% Similarity=0.229 Sum_probs=71.9
Q ss_pred HHHHHHHHhhc---CCCccCCCCCccCCCcchhhhhcccC---ccEEEEcCcccccChh----hHHHHHHhhc---CeEE
Q 021380 190 LLLNCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWF 256 (313)
Q Consensus 190 ~~~~~l~~l~~---~~~~~~~~LSgGekqRv~la~al~~~---a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~ 256 (313)
+..++|+.++. ..++++.+|||||+|||+||++++.+ ++++++|+|+..||.. +++.|.++.+ .+|+
T Consensus 842 ~~~~~L~~lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 921 (993)
T 2ygr_A 842 RYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921 (993)
T ss_dssp HHHHHHHHTTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34567788874 34677889999999999999999976 4999999999999993 4444444433 2579
Q ss_pred EEcChHHHHH--HHH----------hhhhccCChhHHHH
Q 021380 257 IEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 257 vtHd~~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
||||++++.. |++ |++++.|+++++..
T Consensus 922 isHdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 922 IEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp ECCCHHHHTTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred EcCCHHHHHhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 9999998743 433 57888898888754
No 69
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.84 E-value=1.7e-21 Score=201.12 Aligned_cols=95 Identities=18% Similarity=0.192 Sum_probs=74.9
Q ss_pred HHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCc---cEEEEcCcccccCh----hhHHHHHHhhc---CeE
Q 021380 189 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDG----GVWKDVSSMFD---EKW 255 (313)
Q Consensus 189 ~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a---~~li~d~~~llLDE----~~~~~l~~l~~---~~i 255 (313)
.+..++|+.++.. ..+++.+|||||+|||+||++|+.++ ++|++|+|+..||. .+++.|.++.+ .+|
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 4566778888753 46778899999999999999998754 79999999999998 34445554443 257
Q ss_pred EEEcChHHHHH--HHH----------hhhhccCChhHHHH
Q 021380 256 FIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 256 ~vtHd~~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
+||||++++.. |++ |++++.|+++++..
T Consensus 863 vI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~ 902 (916)
T 3pih_A 863 VIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAK 902 (916)
T ss_dssp EECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHS
T ss_pred EEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHh
Confidence 99999998765 554 68999999999864
No 70
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.83 E-value=1.6e-23 Score=192.11 Aligned_cols=157 Identities=10% Similarity=0.042 Sum_probs=112.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
+|+++||++.|+ .. +|+++||+|++|++++|+||||||||||+++|+|++ +|+|. +|++
T Consensus 101 ~i~~~~vs~~y~-~~----vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~----------~~v~ 159 (305)
T 2v9p_A 101 FFNYQNIELITF-IN----ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL----------SFAN 159 (305)
T ss_dssp HHHHTTCCHHHH-HH----HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE----------CGGG
T ss_pred eEEEEEEEEEcC-hh----hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE----------EEec
Confidence 488999999998 45 999999999999999999999999999999999998 47763 4567
Q ss_pred ccCCCCCcccCCccc-CHHHHHHhcCCCCCccHHHHHHHHHH-hhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcC
Q 021380 157 MDGFHLYLSQLDAME-DPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 157 q~~~~~~~~~ltv~e-~l~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~ 234 (313)
|++..+. .|+.+ |+.+.. ... ..+.+.++. +....+ ...|||||||| |++++.++++|+
T Consensus 160 q~~~lf~---~ti~~~ni~~~~-------~~~-~~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll~~p~iLl--- 220 (305)
T 2v9p_A 160 HKSHFWL---ASLADTRAALVD-------DAT-HACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQIKAPPLLV--- 220 (305)
T ss_dssp TTSGGGG---GGGTTCSCEEEE-------EEC-HHHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEECCCCEEE---
T ss_pred Ccccccc---ccHHHHhhccCc-------ccc-HHHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHhCCCCEEE---
Confidence 7754332 36665 765521 011 234455555 332222 66999999999 899999999998
Q ss_pred cccccChhhHHHHHHhhcCeEEEEcChHHHHH--HHH---hhhhccCChhHH
Q 021380 235 NYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQ--RVL---KRHISTGKPPDV 281 (313)
Q Consensus 235 ~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~--rvi---gr~v~~G~~~e~ 281 (313)
+..||....+.+..+ ||++..+.. +++ |++++.|++.++
T Consensus 221 -Ts~LD~~~~~~i~~l-------tH~~~~~~~aD~ivl~~G~iv~~g~~~el 264 (305)
T 2v9p_A 221 -TSNIDVQAEDRYLYL-------HSRVQTFRFEQPCTDESGEQPFNITDADW 264 (305)
T ss_dssp -EESSCSTTCGGGGGG-------TTTEEEEECCCCCCCC---CCCCCCHHHH
T ss_pred -ECCCCHHHHHHHHHH-------hCCHHHHHhCCEEEEeCCEEEEeCCHHHH
Confidence 888998544444332 565543322 223 888899998888
No 71
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.83 E-value=9.5e-22 Score=181.11 Aligned_cols=214 Identities=19% Similarity=0.261 Sum_probs=142.2
Q ss_pred eEEEccceeEccccccccccccccceee-------------------cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNV-------------------NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ 137 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i-------------------~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~ 137 (313)
+|+++||++.|+ + ++++++|.+ .+|+++||+||||||||||+++|+|++.. +|+
T Consensus 37 ~i~~~~v~~~y~--~----~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~-~~~ 109 (308)
T 1sq5_A 37 DLSLEEVAEIYL--P----LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR-WPE 109 (308)
T ss_dssp TCCHHHHHHTHH--H----HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT-STT
T ss_pred ccchHhHHHHHH--H----HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh-CCC
Confidence 588999999994 3 889999988 99999999999999999999999999841 157
Q ss_pred CceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCC-ccCCCCCccCCCc
Q 021380 138 KASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDP 216 (313)
Q Consensus 138 ~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~LSgGekqR 216 (313)
+|+|.+ +.+|++.... .....+.+. ..++.+...+.......+..+..... ...+.++....+|
T Consensus 110 ~G~i~v-----------i~~d~~~~~~---~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~ 174 (308)
T 1sq5_A 110 HRRVEL-----------ITTDGFLHPN---QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDV 174 (308)
T ss_dssp CCCEEE-----------EEGGGGBCCH---HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEE
T ss_pred CCeEEE-----------EecCCccCcH---HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCc
Confidence 787655 3344332110 000000000 01122223333334444444433333 4566777777788
Q ss_pred chhhhhcccCccEEEEcCcccccChh------hHHHHHHhhcCeEEEEcChHHHHHHHHhhhhc----------------
Q 021380 217 VEDDILVGLQHKVVIVDGNYLFLDGG------VWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS---------------- 274 (313)
Q Consensus 217 v~la~al~~~a~~li~d~~~llLDE~------~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~---------------- 274 (313)
+..+......+.++++|+++++.++. -...+.++++..|+|+.|.+...+|++.|...
T Consensus 175 ~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~r~~~~~~~~~ 254 (308)
T 1sq5_A 175 IPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNY 254 (308)
T ss_dssp CTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCTTSTTHHH
T ss_pred ccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhccCCchhhhcc
Confidence 76554555668899999999998720 00135667888899999999888877765431
Q ss_pred cCChhHH----HHHHHHhcCCchHH-HHHhhcCCCCEEeccCC
Q 021380 275 TGKPPDV----AKWRIEYNDRPNAE-LIMKSKKNADLVIKSID 312 (313)
Q Consensus 275 ~G~~~e~----~~~~~~~~~~~~~~-~i~~~~~~aD~i~~~~~ 312 (313)
.|-+.+. +..+|...++|+.+ ||.|.+..||+||++..
T Consensus 255 ~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~ 297 (308)
T 1sq5_A 255 AKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSA 297 (308)
T ss_dssp HTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECG
T ss_pred cCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCC
Confidence 2444442 44556677788886 99999999999998763
No 72
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.82 E-value=2e-21 Score=179.42 Aligned_cols=211 Identities=23% Similarity=0.310 Sum_probs=157.2
Q ss_pred ccceeEccccccccccccccceeecCCe------EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEE
Q 021380 81 RCMDEVYDALAQRLLPTSALASNVNVKH------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV 154 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i~~Ge------iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~ 154 (313)
+.+++.|++.. .|.+++..+.++. ++||+||||||||||+++|.+++.. +|+.| .+++
T Consensus 64 rll~~~~~~~~----~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~-~~~~~-----------~v~~ 127 (321)
T 3tqc_A 64 RLLSFYVTARQ----TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR-WPDHP-----------NVEV 127 (321)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT-STTCC-----------CEEE
T ss_pred HHHHHhhcchH----HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc-cCCCC-----------eEEE
Confidence 45566777776 8888998888776 9999999999999999999999961 12333 2677
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCC-CccCCCCCccCCCcchhhhhcccCccEEEEc
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVD 233 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~LSgGekqRv~la~al~~~a~~li~d 233 (313)
+.+|+++.....+. ++ .....++.|..++...+.+.+..+..+. ....+.||.+..+|+.........++++|+|
T Consensus 128 i~~D~f~~~~~~l~--~~--~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvE 203 (321)
T 3tqc_A 128 ITTDGFLYSNAKLE--KQ--GLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILE 203 (321)
T ss_dssp EEGGGGBCCHHHHH--HT--TCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEE
T ss_pred Eeecccccchhhhh--hH--HHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEE
Confidence 89998765432111 00 0012356677788888888888888766 6788899999999987655666789999999
Q ss_pred CcccccChh------hHHHHHHhhcCeEEEEcChHHHHHHHHhhhhc-c---------------CChhH----HHHHHHH
Q 021380 234 GNYLFLDGG------VWKDVSSMFDEKWFIEVDLDTAMQRVLKRHIS-T---------------GKPPD----VAKWRIE 287 (313)
Q Consensus 234 ~~~llLDE~------~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~-~---------------G~~~e----~~~~~~~ 287 (313)
+.+++.|+. -+..+.++++..|+|+.+.+....|++.|... . +-+.+ .+...|.
T Consensus 204 Gi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~ 283 (321)
T 3tqc_A 204 GLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWN 283 (321)
T ss_dssp CTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999862 12236678888999999999998887755432 1 22222 3445677
Q ss_pred hcCCchHH-HHHhhcCCCCEEeccC
Q 021380 288 YNDRPNAE-LIMKSKKNADLVIKSI 311 (313)
Q Consensus 288 ~~~~~~~~-~i~~~~~~aD~i~~~~ 311 (313)
..+.|+.+ ||+|++.+||+|++.-
T Consensus 284 ~~~~pn~~~~I~ptr~~Adlil~~g 308 (321)
T 3tqc_A 284 EINKVNLMENILPYKNRAQLILEKA 308 (321)
T ss_dssp HTHHHHHHHHTGGGGGGCSEEEEEC
T ss_pred hccccCHHHhCccCccCceEEEecC
Confidence 78889987 9999999999999864
No 73
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.81 E-value=5.7e-21 Score=161.03 Aligned_cols=140 Identities=11% Similarity=0.008 Sum_probs=84.9
Q ss_pred ccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHH
Q 021380 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 99 ~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~ 178 (313)
||||++++|++++|+||||||||||+|++.+-.. ..++.. ..++++|+....... -++++.+
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~---~~~~d~---------~~g~~~~~~~~~~~~-~~~~~~~----- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE---VISSDF---------CRGLMSDDENDQTVT-GAAFDVL----- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG---EEEHHH---------HHHHHCSSTTCGGGH-HHHHHHH-----
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe---EEccHH---------HHHHhcCcccchhhH-HHHHHHH-----
Confidence 6899999999999999999999999996432111 000000 012233332110000 0000000
Q ss_pred hcCCCCCccHHHHHHHHHHhhcC-CCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh---------------
Q 021380 179 RRGAPWTFNPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--------------- 242 (313)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~--------------- 242 (313)
...... ....+.. ........|+|||||++||++++.+++++++|+|+..||+.
T Consensus 63 ---------~~~~~~-~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~ 132 (171)
T 4gp7_A 63 ---------HYIVSK-RLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIR 132 (171)
T ss_dssp ---------HHHHHH-HHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHH
T ss_pred ---------HHHHHH-HHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHH
Confidence 001111 1112211 11233456999999999999999999999999999999986
Q ss_pred -hHHHHHHhhc-------CeEEEEcChHHHHH
Q 021380 243 -VWKDVSSMFD-------EKWFIEVDLDTAMQ 266 (313)
Q Consensus 243 -~~~~l~~l~~-------~~i~vtHd~~~~~~ 266 (313)
....+.+++. .+|++|||++++..
T Consensus 133 ~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 133 KHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 4455555432 25799999999865
No 74
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.79 E-value=5e-20 Score=175.66 Aligned_cols=57 Identities=16% Similarity=0.028 Sum_probs=47.0
Q ss_pred CCccCCCcchhhhhcccCc--cEEEEcCcccccChh----hHHHHHHhh--cCeEEEEcChHHHH
Q 021380 209 FDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGG----VWKDVSSMF--DEKWFIEVDLDTAM 265 (313)
Q Consensus 209 LSgGekqRv~la~al~~~a--~~li~d~~~llLDE~----~~~~l~~l~--~~~i~vtHd~~~~~ 265 (313)
||||||||++||++++.++ .+|++|+|+..||.. +.+.|.++. ..+|+||||++++.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~ 360 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA 360 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh
Confidence 6999999999999999999 999999999999994 444444443 23579999997754
No 75
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.78 E-value=1.8e-19 Score=167.52 Aligned_cols=215 Identities=30% Similarity=0.494 Sum_probs=167.2
Q ss_pred cccccceeecCCeE--EEEECCCCCCHHHHHHHHHHHhcccC--------------------------------------
Q 021380 96 PTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIW-------------------------------------- 135 (313)
Q Consensus 96 iL~~is~~i~~Gei--v~IiGpNGsGKSTLlk~L~Gll~~~~-------------------------------------- 135 (313)
+++.+++.+++|++ ++|+|++||||||+.++|++.+...+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~i~~i 90 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEM 90 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCccHHHH
Confidence 78889999999998 99999999999999999999874211
Q ss_pred -CCCce-------------------------------------eeeCCC----CCC-------CeEEEEeccCCCCCccc
Q 021380 136 -PQKAS-------------------------------------SFDSQV----KPP-------DVATVLPMDGFHLYLSQ 166 (313)
Q Consensus 136 -p~~G~-------------------------------------i~~~~~----~~~-------~~i~~v~q~~~~~~~~~ 166 (313)
...|+ |.+... ... ..+.++++|+|+++...
T Consensus 91 f~~~ge~fr~~E~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vi~mDgFh~~~~~ 170 (359)
T 2ga8_A 91 IENQGLFKDHVEDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRC 170 (359)
T ss_dssp HHTTTCCGGGTTCTTCCCEEEEC-----CCCEEEECTTGGGGCEEECC------------CCCCSEEEEEGGGGBCCHHH
T ss_pred HHHhcccchHHHhhhcccceeecccCCcccccccccccccccccccccccccccccccccccCCeEEEEecCcCCCCHHH
Confidence 00111 001000 000 24778999999887766
Q ss_pred CCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC-----------------------------CCccCCCCCccCCCcc
Q 021380 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------------------------GSVYAPSFDHGVGDPV 217 (313)
Q Consensus 167 ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----------------------------~~~~~~~LSgGekqRv 217 (313)
++-+++-......+|.|..++...+.+.++.+... ....+|.|+.....++
T Consensus 171 L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~P~yD~~~~d~~ 250 (359)
T 2ga8_A 171 LDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPT 250 (359)
T ss_dssp HTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCEEEEEEETTTTEEE
T ss_pred HhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceEeeccccCccCCCC
Confidence 65554443345678899999998888887777533 3446778898888888
Q ss_pred hhhhhcccCccEEEEcCcccccChhhHHHHHHhhc-----CeEEEEcChHHHHHHHHhhhhccCC--hhHHHHHHHHhcC
Q 021380 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD-----EKWFIEVDLDTAMQRVLKRHISTGK--PPDVAKWRIEYND 290 (313)
Q Consensus 218 ~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~-----~~i~vtHd~~~~~~rvigr~v~~G~--~~e~~~~~~~~~~ 290 (313)
.-...+...++++++|+.++++++..|..+.++++ ..|||+-|.++..+|++.|.+..|. ..+....++..++
T Consensus 251 ~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~~~Gl~~s~eea~~r~~~~d 330 (359)
T 2ga8_A 251 PDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKFRSND 330 (359)
T ss_dssp EEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHCT
T ss_pred CCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhhccCCCCCHHHHHHHHHhcC
Confidence 77666666689999999999999777888889998 6789999999999999999988887 7777777788999
Q ss_pred CchHHHHHhhcCCCCEEecc
Q 021380 291 RPNAELIMKSKKNADLVIKS 310 (313)
Q Consensus 291 ~~~~~~i~~~~~~aD~i~~~ 310 (313)
.|+.+||.|++..||+|+..
T Consensus 331 ~pN~~~I~~~~~~ad~i~~~ 350 (359)
T 2ga8_A 331 LLNGRDIDNHLIKVDNIVHI 350 (359)
T ss_dssp TTSSHHHHHTBCCCTTEEEE
T ss_pred chhhHhHhhcCCCCCEEEEe
Confidence 99999999999999999864
No 76
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.78 E-value=4.9e-20 Score=166.62 Aligned_cols=143 Identities=13% Similarity=0.055 Sum_probs=88.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC-----CCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP 183 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~-----~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~ 183 (313)
.++|+||||||||||+|+|+|++. |++|+|.++|.+. .+.+++++|+..... .+|+.+++.++.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~--~ltv~d~~~~g~~~~~-- 76 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKM--KLTVIDTPGFGDQINN-- 76 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CC--EEEEECCCC--CCSBC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCcccCcceeeeeeEEEeecCCCcC--CceEEechhhhhhccc--
Confidence 589999999999999999999999 9999999988642 356899999854333 4899999887643322
Q ss_pred CCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc--CeEEEEcCh
Q 021380 184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD--EKWFIEVDL 261 (313)
Q Consensus 184 ~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~--~~i~vtHd~ 261 (313)
....+.+.+.+. ....+....+|||||+||+++|++++ .++++||+.-.+|+.-.+.+..+.+ .+|+|.|..
T Consensus 77 -~~~~~~i~~~~~--~~~~~~~~~~LS~G~~qrv~iaRal~---~lllldep~~gL~~lD~~~l~~L~~~~~vI~Vi~K~ 150 (270)
T 3sop_A 77 -ENCWEPIEKYIN--EQYEKFLKEEVNIARKKRIPDTRVHC---CLYFISPTGHSLRPLDLEFMKHLSKVVNIIPVIAKA 150 (270)
T ss_dssp -TTCSHHHHHHHH--HHHHHHHHHHSCTTCCSSCCCCSCCE---EEEEECCCSSSCCHHHHHHHHHHHTTSEEEEEETTG
T ss_pred -HHHHHHHHHHHH--HHHHhhhHHhcCcccchhhhhheeee---eeEEEecCCCcCCHHHHHHHHHHHhcCcEEEEEecc
Confidence 122233333332 11223345589999999999999874 5899999988999854555554443 356777776
Q ss_pred HHH
Q 021380 262 DTA 264 (313)
Q Consensus 262 ~~~ 264 (313)
+.+
T Consensus 151 D~l 153 (270)
T 3sop_A 151 DTM 153 (270)
T ss_dssp GGS
T ss_pred ccC
Confidence 643
No 77
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.78 E-value=2.7e-21 Score=184.21 Aligned_cols=138 Identities=9% Similarity=0.033 Sum_probs=102.9
Q ss_pred cccccceeecCCe--------------------EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEE
Q 021380 96 PTSALASNVNVKH--------------------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL 155 (313)
Q Consensus 96 iL~~is~~i~~Ge--------------------iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v 155 (313)
+|++|||+|++|+ ++||+||||||||||+|+|+|+++ |++|+|.++|.+..+. +++
T Consensus 38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~t~~-~~v 113 (413)
T 1tq4_A 38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEVTME-RHP 113 (413)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC----CC-CEE
T ss_pred HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeeccee-EEe
Confidence 8999999999999 999999999999999999999999 9999999988654333 678
Q ss_pred eccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCC-CccCCCCCcc--CCCcchhhhhccc-------
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHG--VGDPVEDDILVGL------- 225 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~LSgG--ekqRv~la~al~~------- 225 (313)
+|++. + +.+++.|++.+.. + ...+.++++.++... +..+ .||+| |+||+.++++++.
T Consensus 114 ~q~~~-~--~~ltv~D~~g~~~-----~----~~~~~~~L~~~~L~~~~~~~-~lS~G~~~kqrv~la~aL~~~~~p~~l 180 (413)
T 1tq4_A 114 YKHPN-I--PNVVFWDLPGIGS-----T----NFPPDTYLEKMKFYEYDFFI-IISATRFKKNDIDIAKAISMMKKEFYF 180 (413)
T ss_dssp EECSS-C--TTEEEEECCCGGG-----S----SCCHHHHHHHTTGGGCSEEE-EEESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred ccccc-c--CCeeehHhhcccc-----h----HHHHHHHHHHcCCCccCCeE-EeCCCCccHHHHHHHHHHHhcCCCeEE
Confidence 88742 2 2478888875431 1 123567777777432 3333 39999 9999999999988
Q ss_pred ---CccEEEEcCcccccCh----hhHHHHHHh
Q 021380 226 ---QHKVVIVDGNYLFLDG----GVWKDVSSM 250 (313)
Q Consensus 226 ---~a~~li~d~~~llLDE----~~~~~l~~l 250 (313)
+++++++|+|+..||. .+++.+.++
T Consensus 181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l 212 (413)
T 1tq4_A 181 VRTKVDSDITNEADGEPQTFDKEKVLQDIRLN 212 (413)
T ss_dssp EECCHHHHHHHHHTTCCTTCCHHHHHHHHHHH
T ss_pred EEecCcccccCcccccCCHHHHHHHHHHHHHH
Confidence 6666677777777776 445555554
No 78
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.76 E-value=1.3e-20 Score=165.12 Aligned_cols=154 Identities=13% Similarity=0.022 Sum_probs=88.6
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC---------CCeEEEEeccCCCCCccc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP---------PDVATVLPMDGFHLYLSQ 166 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~---------~~~i~~v~q~~~~~~~~~ 166 (313)
-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+. .+.++|++|+...+. .
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~----p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~--~ 82 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF----P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFE--D 82 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS----T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHH--H
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC----C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHH--H
Confidence 689999999999999999999999999999999987 6 88888 4321 234677888743221 1
Q ss_pred CC-cccCHH---HHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh-
Q 021380 167 LD-AMEDPK---EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG- 241 (313)
Q Consensus 167 lt-v~e~l~---~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE- 241 (313)
++ +.+++. +....++. ....+.++++..... .....|||||+||++++ ....+++++.++++++|||
T Consensus 83 ~~~~~~~l~~~~~~~~~~g~----~~~~i~~~l~~~~~~--il~~~lsggq~qR~~i~--~~~~~~~ll~~~~~~~Lde~ 154 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFYGT----LKSEYDKAKEQNKIC--LFEMNINGVKQLKKSTH--IKNALYIFIKPPSTDVLLSR 154 (218)
T ss_dssp HHHTTCEEEEEEETTEEEEE----EHHHHHHHHHTTCEE--EEEECHHHHHHHTTCSS--CCSCEEEEEECSCHHHHHHH
T ss_pred hhhccchhhhhhcccccCCC----cHHHHHHHHhCCCcE--EEEecHHHHHHHHHHhc--CCCcEEEEEeCcCHHHHHHH
Confidence 22 111111 11111221 123455555543311 11147899999999884 1223677888888888888
Q ss_pred ----------hhHHHHHHhh----------cCeEEEEcChHHHHH
Q 021380 242 ----------GVWKDVSSMF----------DEKWFIEVDLDTAMQ 266 (313)
Q Consensus 242 ----------~~~~~l~~l~----------~~~i~vtHd~~~~~~ 266 (313)
.+.+.+..+. -..|+++||++++..
T Consensus 155 ~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~ 199 (218)
T 1z6g_A 155 LLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQ 199 (218)
T ss_dssp HHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHH
Confidence 2233332221 125799999998876
No 79
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.74 E-value=1.8e-18 Score=157.84 Aligned_cols=192 Identities=18% Similarity=0.201 Sum_probs=126.9
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHH------
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH------ 177 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~------ 177 (313)
-.++.++||+|++|||||||++.|.+++. +. |. ..+.+.+++||++++. .+..+|+.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~---~~-g~-------~~~~~~iv~~D~f~~~---~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM---EK-YG-------GEKSIGYASIDDFYLT---HEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH---HH-HG-------GGSCEEEEEGGGGBCC---HHHHHHHHHHTTTCGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh---hc-CC-------CCceEEEeccccccCC---hHHHHHHhccccccchh
Confidence 45789999999999999999999999997 42 20 0122555699987654 35566665541
Q ss_pred HhcCCCCCccHHHHHHHHHHhhcC------CC----ccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhh----
Q 021380 178 ARRGAPWTFNPLLLLNCLKNLRNQ------GS----VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV---- 243 (313)
Q Consensus 178 ~~~~~~~~~~~~~~~~~l~~l~~~------~~----~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~---- 243 (313)
..++.+...+...+.+.+..+..+ .. .+-..+||||+||+.++.+...+++++++|+.++++|+..
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~~~~~~ 173 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPILQGIE 173 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCCCSCTT
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCccchhhh
Confidence 223467788888888888888755 21 2234789999999998733322899999999999999742
Q ss_pred ------------HHH-------HHHhhcCe---EEEEc-ChHHHHHHHHhh--h-h-cc--CChhHHHHHHHHhcCCchH
Q 021380 244 ------------WKD-------VSSMFDEK---WFIEV-DLDTAMQRVLKR--H-I-ST--GKPPDVAKWRIEYNDRPNA 294 (313)
Q Consensus 244 ------------~~~-------l~~l~~~~---i~vtH-d~~~~~~rvigr--~-v-~~--G~~~e~~~~~~~~~~~~~~ 294 (313)
.+. +.++++.. ||+.- +.+.+.++.+.| . + .. |...+.+.+ +...++|++
T Consensus 174 ~~~~~~~~l~~~n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v~~-~~~~~~p~y 252 (290)
T 1odf_A 174 NNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQVHA-FVDRYMPSY 252 (290)
T ss_dssp TCSSSCTTHHHHHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHHHH-HHHTTHHHH
T ss_pred hcccchhhHHHHHHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHHHH-HHHHhcchH
Confidence 111 23334555 99988 444555434443 2 2 23 766666554 444566665
Q ss_pred H-HHHh-------hcCCCCEEeccC
Q 021380 295 E-LIMK-------SKKNADLVIKSI 311 (313)
Q Consensus 295 ~-~i~~-------~~~~aD~i~~~~ 311 (313)
+ |+.| .+ +||+|++..
T Consensus 253 ~~~~~~~~~~~~~~~-~adlvl~~~ 276 (290)
T 1odf_A 253 KLYLNDFVRSESLGS-IATLTLGID 276 (290)
T ss_dssp HHHHHHHHHHTCSSS-SEEEEEEEC
T ss_pred HHHhHHHHHhccCCC-CCCEEEEEC
Confidence 5 5544 44 799998643
No 80
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.74 E-value=5.3e-21 Score=183.98 Aligned_cols=174 Identities=10% Similarity=-0.023 Sum_probs=117.9
Q ss_pred CeEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC-------
Q 021380 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------- 147 (313)
Q Consensus 76 ~~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~------- 147 (313)
++++++++++.|+ +.. +|+++ |.|.+|++++|+||||||||||+++|+|+.+ |+.|.|.++|..
T Consensus 130 ~~l~~~~v~~~~~tg~~----vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~---~~~G~i~~~G~r~~ev~~~ 201 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVR----AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR---ADVIVVGLIGERGREVKDF 201 (438)
T ss_dssp CTTTSCCCCSBCCCSCH----HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHHHHHHH
T ss_pred CceEEeccceecCCCce----EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEeceecHHHHHH
Confidence 4688999999997 455 99999 9999999999999999999999999999999 999999998872
Q ss_pred ---------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcch
Q 021380 148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 148 ---------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~ 218 (313)
..+.++|++|++... ...+++.+|+.+....+.... . .+.... ..+..||+|| ||++
T Consensus 202 ~~~~~~~~~l~r~i~~v~q~~~~~-~~~~~v~~~~~~~ae~~~~~~-~----------~v~~~l-d~l~~lS~g~-qrvs 267 (438)
T 2dpy_A 202 IENILGPDGRARSVVIAAPADVSP-LLRMQGAAYATRIAEDFRDRG-Q----------HVLLIM-DSLTRYAMAQ-REIA 267 (438)
T ss_dssp HHTTTHHHHHHTEEEEEECTTSCH-HHHHHHHHHHHHHHHHHHTTT-C----------EEEEEE-ECHHHHHHHH-HHHH
T ss_pred HHhhccccccCceEEEEECCCCCH-HHHHHHHHHHHHHHHHHHhCC-C----------CHHHHH-HhHHHHHHHH-HHHH
Confidence 124589999964322 234677777766544322100 0 000000 1245789999 9999
Q ss_pred hhhhcccCccEEEEcCcccccChhhH----HHHHHhhc-----C-------eEEEEcChHHHHH-HHH----hhhhccCC
Q 021380 219 DDILVGLQHKVVIVDGNYLFLDGGVW----KDVSSMFD-----E-------KWFIEVDLDTAMQ-RVL----KRHISTGK 277 (313)
Q Consensus 219 la~al~~~a~~li~d~~~llLDE~~~----~~l~~l~~-----~-------~i~vtHd~~~~~~-rvi----gr~v~~G~ 277 (313)
+| +.++.+ +..+|.... +.+.++.. . ++++|||++.... +++ |+++..|+
T Consensus 268 lA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Ivl~~~ 338 (438)
T 2dpy_A 268 LA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRR 338 (438)
T ss_dssp HH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEEECHH
T ss_pred HH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCccchhhceEEEEeCcEEEEeCC
Confidence 95 233333 788998444 44444433 2 3478899973222 333 66666555
Q ss_pred hhH
Q 021380 278 PPD 280 (313)
Q Consensus 278 ~~e 280 (313)
+.+
T Consensus 339 ~~~ 341 (438)
T 2dpy_A 339 LAE 341 (438)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 81
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.73 E-value=1.3e-19 Score=166.28 Aligned_cols=158 Identities=9% Similarity=0.043 Sum_probs=109.5
Q ss_pred cceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCC-----------
Q 021380 82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD----------- 150 (313)
Q Consensus 82 ~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~----------- 150 (313)
.+.+.++... .+.++||++++|++++|+||||||||||+++|+|+++ |++|+|.+.+.+..+
T Consensus 79 ~l~~~l~~~~----~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~g~V~l~g~d~~r~~a~~ql~~~~ 151 (302)
T 3b9q_A 79 SVLEMLAKKN----SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWA 151 (302)
T ss_dssp HHHHHHCC------CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHH
T ss_pred HHHHHhCCcc----cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---HcCCeEEEEeecccchhHHHHHHHHH
Confidence 3444554433 4568999999999999999999999999999999999 999999998876421
Q ss_pred ---eEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhccc
Q 021380 151 ---VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 151 ---~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~ 225 (313)
.++|++|+....+ +.+++.+++.+.... +. + ..+++.++.. .+.++.+|| +||++++++++.
T Consensus 152 ~~~~i~~v~q~~~~~~-~~~~v~e~l~~~~~~-~~----d----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~ 218 (302)
T 3b9q_A 152 ERTGCEIVVAEGDKAK-AATVLSKAVKRGKEE-GY----D----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSG 218 (302)
T ss_dssp HHHTCEEECCC--CCC-HHHHHHHHHHHHHHT-TC----S----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTT
T ss_pred HhcCceEEEecCCccC-HHHHHHHHHHHHHHc-CC----c----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhcc
Confidence 3789999854022 246888888765321 11 1 0122333321 233455788 899999999999
Q ss_pred Ccc--EEEEcCcccccChh-hHHHHHHhh-cCeEEEEcC
Q 021380 226 QHK--VVIVDGNYLFLDGG-VWKDVSSMF-DEKWFIEVD 260 (313)
Q Consensus 226 ~a~--~li~d~~~llLDE~-~~~~l~~l~-~~~i~vtHd 260 (313)
.++ +|++| ++..+|.. ....+.+.. -.++++||.
T Consensus 219 ~P~e~lLvLD-ptsglD~~~~~~~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 219 APNEILLVLD-GNTGLNMLPQAREFNEVVGITGLILTKL 256 (302)
T ss_dssp CCSEEEEEEE-GGGGGGGHHHHHHHHHHTCCCEEEEECC
T ss_pred CCCeeEEEEe-CCCCcCHHHHHHHHHHhcCCCEEEEeCC
Confidence 999 99999 99999972 222222221 235899993
No 82
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.73 E-value=3.3e-18 Score=158.92 Aligned_cols=130 Identities=9% Similarity=0.009 Sum_probs=94.0
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccC
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 159 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~ 159 (313)
++++++ | .. +++++||.+++|++++|+||||||||||+++|+|+++ |++|.|.++|....
T Consensus 151 ~~~v~f-y--~~----~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~---------- 210 (330)
T 2pt7_A 151 YNLLDN-K--EQ----AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEI---------- 210 (330)
T ss_dssp TTTSTT-H--HH----HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCC----------
T ss_pred cCchhh-H--HH----HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeecc----------
Confidence 556666 6 33 8999999999999999999999999999999999999 99999998775310
Q ss_pred CCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCccccc
Q 021380 160 FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239 (313)
Q Consensus 160 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llL 239 (313)
.... ..+.+.+ .. .|||+||++|++++..+++++++|++..
T Consensus 211 -~~~~----~~~~i~~------~~--------------------------ggg~~~r~~la~aL~~~p~ilildE~~~-- 251 (330)
T 2pt7_A 211 -VFKH----HKNYTQL------FF--------------------------GGNITSADCLKSCLRMRPDRIILGELRS-- 251 (330)
T ss_dssp -CCSS----CSSEEEE------EC--------------------------BTTBCHHHHHHHHTTSCCSEEEECCCCS--
T ss_pred -cccc----chhEEEE------Ee--------------------------CCChhHHHHHHHHhhhCCCEEEEcCCCh--
Confidence 0000 0000000 00 0899999999888888888888888765
Q ss_pred ChhhHHHHHHhhcC---eEEEEcChHHHHH--HHH
Q 021380 240 DGGVWKDVSSMFDE---KWFIEVDLDTAMQ--RVL 269 (313)
Q Consensus 240 DE~~~~~l~~l~~~---~i~vtHd~~~~~~--rvi 269 (313)
.++++.+..+... +++++|+.+.... |++
T Consensus 252 -~e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~ 285 (330)
T 2pt7_A 252 -SEAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLA 285 (330)
T ss_dssp -THHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCCEEEEEEcccHHHHHhhhhe
Confidence 3566666665432 4799999884433 544
No 83
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.72 E-value=4.7e-20 Score=159.89 Aligned_cols=72 Identities=22% Similarity=0.177 Sum_probs=42.8
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC----CCCeEEEEeccCCCCCcccCCcc
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK----PPDVATVLPMDGFHLYLSQLDAM 170 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~----~~~~i~~v~q~~~~~~~~~ltv~ 170 (313)
+++.| .+|++|++++|+||||||||||+|+|+|+++ ...+.+.+.+.. ..+.++|++|+...+ +.+++.
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~---~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~--~~~~~~ 82 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP---NLHFSVSATTRAPRPGEVDGVDYHFIDPTRF--QQLIDQ 82 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHST---TCEECCCEESSCCCTTCCBTTTBEECCHHHH--HHHHHT
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC---ceEEcccccccCCcccccCCCeeEecCHHHH--HHHHhc
Confidence 37777 7899999999999999999999999999985 333322221111 123478899885432 235666
Q ss_pred cCH
Q 021380 171 EDP 173 (313)
Q Consensus 171 e~l 173 (313)
+++
T Consensus 83 ~~l 85 (207)
T 1znw_A 83 GEL 85 (207)
T ss_dssp TCE
T ss_pred CCc
Confidence 654
No 84
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.72 E-value=1.3e-18 Score=147.74 Aligned_cols=131 Identities=12% Similarity=0.047 Sum_probs=87.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC--CCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV--KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF 186 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~--~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~ 186 (313)
+++|+||||||||||+++|+|++.. .-.|...-.-. ...+.++|++|+. ++.+++. ...+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i--~~~g~~~~~~~~~~~~~~ig~~~~~~--------~~~~~~~---~~~~~~~-- 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETKKRTGFRIITT--------EGKKKIF---SSKFFTS-- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC------CCEEEEEET--------TCCEEEE---EETTCCC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--cCCCEEhhhhccccccceeEEEeecC--------cHHHHHH---HhhcCCc--
Confidence 6899999999999999999999851 11232110000 1234578888873 2222220 0000000
Q ss_pred cHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhh-----cccCccEEEEcC--cccccChhhHHHHHHhhcC----eE
Q 021380 187 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL-----VGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE----KW 255 (313)
Q Consensus 187 ~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~a-----l~~~a~~li~d~--~~llLDE~~~~~l~~l~~~----~i 255 (313)
....++++..|||||+||+++|++ ++.+++++++|+ ++..+|+...+.+.++++. +|
T Consensus 67 ------------~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i 134 (178)
T 1ye8_A 67 ------------KKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVV 134 (178)
T ss_dssp ------------SSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEE
T ss_pred ------------cccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEE
Confidence 012345667999999999999996 899999999999 9999999777777776542 46
Q ss_pred EEEc---ChHHHHH
Q 021380 256 FIEV---DLDTAMQ 266 (313)
Q Consensus 256 ~vtH---d~~~~~~ 266 (313)
+++| |.+.+..
T Consensus 135 ~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 135 ATIPIRDVHPLVKE 148 (178)
T ss_dssp EECCSSCCSHHHHH
T ss_pred EEEccCCCchHHHH
Confidence 7874 7777764
No 85
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.70 E-value=5.1e-18 Score=159.71 Aligned_cols=61 Identities=13% Similarity=0.094 Sum_probs=49.8
Q ss_pred ccCCCCCccCCCcchhhhhcc------cCccEEEEcCcccccChh----hHHHHHHhhcC---eEEEEcChHHH
Q 021380 204 VYAPSFDHGVGDPVEDDILVG------LQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDTA 264 (313)
Q Consensus 204 ~~~~~LSgGekqRv~la~al~------~~a~~li~d~~~llLDE~----~~~~l~~l~~~---~i~vtHd~~~~ 264 (313)
+++.+|||||+||++||++++ .+++++++|+|+..||+. +++.|.++.+. +|+||||++.+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~ 348 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFS 348 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHH
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHH
Confidence 466799999999999999998 699999999999999994 44445554432 47999999874
No 86
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.68 E-value=7.1e-19 Score=164.35 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=58.1
Q ss_pred CeEEEccceeEcc-ccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 76 ~~l~v~~ls~~y~-~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
++++++++++.|+ +.. +|+++ |.|.+|+++||+||||||||||+++|+|+++ |+.|.|.+.|..
T Consensus 44 ~~i~~~~l~~~~~tg~~----ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~---~~~g~i~~~G~~ 108 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVR----AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS---ADIIVLALIGER 108 (347)
T ss_dssp CSTTCCCCCSEECCSCH----HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCC
T ss_pred CCeeecccceecCCCCE----EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC---CCEEEEEEeccc
Confidence 4688999999997 545 99999 9999999999999999999999999999999 999988877653
No 87
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.67 E-value=3.7e-18 Score=159.90 Aligned_cols=146 Identities=9% Similarity=0.037 Sum_probs=105.1
Q ss_pred cccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCC--------------eEEEEeccCCCCC
Q 021380 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--------------VATVLPMDGFHLY 163 (313)
Q Consensus 98 ~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~--------------~i~~v~q~~~~~~ 163 (313)
.++||++++|++++|+||||||||||+++|+|+++ |++|+|.+.+.+..+ .++|++|+.....
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc---ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 57899999999999999999999999999999999 999999998876421 3789999853122
Q ss_pred cccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcC--CCccCCCCCccCCCcchhhhhcccCcc--EEEEcCccccc
Q 021380 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFL 239 (313)
Q Consensus 164 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~LSgGekqRv~la~al~~~a~--~li~d~~~llL 239 (313)
+.+++.+++.+.... +. +. .+++.++.. .+..+.+|| +||++|+++++..+. +|++| ++..+
T Consensus 225 -p~~tv~e~l~~~~~~-~~----d~----~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 225 -AATVLSKAVKRGKEE-GY----DV----VLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp -HHHHHHHHHHHHHHT-TC----SE----EEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred -hhhhHHHHHHHHHhC-CC----HH----HHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 246888888765421 11 10 122333321 223455788 899999999999999 99999 89999
Q ss_pred Chh-hHHHHHHhh-cCeEEEEcC
Q 021380 240 DGG-VWKDVSSMF-DEKWFIEVD 260 (313)
Q Consensus 240 DE~-~~~~l~~l~-~~~i~vtHd 260 (313)
|.. ....+.+.. -.+|++||.
T Consensus 291 D~~~~~~~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 291 NMLPQAREFNEVVGITGLILTKL 313 (359)
T ss_dssp GGHHHHHHHHHHTCCCEEEEESC
T ss_pred CHHHHHHHHHHhcCCeEEEEecC
Confidence 972 222222222 236899994
No 88
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.64 E-value=1.7e-17 Score=152.28 Aligned_cols=156 Identities=12% Similarity=0.024 Sum_probs=76.9
Q ss_pred ccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHH-hcccCCCCceeeeCCCCC-----CCeEEE
Q 021380 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKP-----PDVATV 154 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl-l~~~~p~~G~i~~~~~~~-----~~~i~~ 154 (313)
.||++.|+++. ++++++|+| +|+|+||+|||||+++|.|. +. |++| +.++|.+. .+.+++
T Consensus 2 ~~l~~~~~~~~----~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~---~~~g-i~~~g~~~~~t~~~~~~~~ 67 (301)
T 2qnr_A 2 SNLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY---PERV-ISGAAEKIERTVQIEASTV 67 (301)
T ss_dssp --------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEE
T ss_pred CCCcceECCEE----EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc---CCCC-cccCCcccCCcceEeeEEE
Confidence 47899999887 999999998 99999999999999999997 66 8888 66555332 134677
Q ss_pred EeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcC
Q 021380 155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~ 234 (313)
++|..... ..++++|++.++..... . +....+...+....+.++.++|||||||+.++++++ ++++++
T Consensus 68 ~~q~~~~~--~~ltv~Dt~g~~~~~~~-~-----e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~lde 135 (301)
T 2qnr_A 68 EIEERGVK--LRLTVVDTPGYGDAINC-R-----DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFIS 135 (301)
T ss_dssp EEC---CC--EEEEEEEEC-----------------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred EecCCCcc--cCcchhhhhhhhhhcCc-H-----HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeec
Confidence 77764322 24788888776432210 0 111111122222223566789999999999955542 788888
Q ss_pred ccc-ccChhhHHHHHHhhcC----eEEEEcChH
Q 021380 235 NYL-FLDGGVWKDVSSMFDE----KWFIEVDLD 262 (313)
Q Consensus 235 ~~l-lLDE~~~~~l~~l~~~----~i~vtHd~~ 262 (313)
|.. .||+.-.+.+..+... .|+.+||+.
T Consensus 136 Pt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 136 PFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred CcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 876 4898555666665443 247789974
No 89
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.64 E-value=3.3e-17 Score=136.40 Aligned_cols=87 Identities=18% Similarity=0.149 Sum_probs=70.2
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCe---EEE
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV---ATV 154 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~---i~~ 154 (313)
++.+++++.|++.. +++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|.+.... ..+
T Consensus 8 ~~~~~~~~~~g~~~----~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~V~~~g~~i~~~~~~~~~ 79 (158)
T 1htw_A 8 IPDEFSMLRFGKKF----AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGNVKSPTYTLVEEYNIAGK 79 (158)
T ss_dssp ECSHHHHHHHHHHH----HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSCCCCCTTTCEEEEEETTE
T ss_pred cCCHHHHHHHHHHH----HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCeEEECCEeeeeeccCCCc
Confidence 44567899998776 999999999999999999999999999999999998 7899999988764211 125
Q ss_pred EeccCCCCCcccCCcccCHHH
Q 021380 155 LPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 155 v~q~~~~~~~~~ltv~e~l~~ 175 (313)
++|+. .++ .+|+.+++.+
T Consensus 80 ~~q~~-~l~--~ltv~e~l~~ 97 (158)
T 1htw_A 80 MIYHF-DLY--RLADPEELEF 97 (158)
T ss_dssp EEEEE-ECT--TCSCTTHHHH
T ss_pred ceecc-ccc--cCCcHHHHHH
Confidence 77764 333 4899888854
No 90
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.61 E-value=2.2e-16 Score=146.06 Aligned_cols=61 Identities=11% Similarity=-0.062 Sum_probs=47.9
Q ss_pred CccCCCCCccCCCcchhhhhcc----cCccEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHH
Q 021380 203 SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDT 263 (313)
Q Consensus 203 ~~~~~~LSgGekqRv~la~al~----~~a~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~ 263 (313)
+.++..||+|||||++||++++ .+++++++|+|+..||+. +++.+.++.. .+|++||+.+.
T Consensus 214 ~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~ 284 (322)
T 1e69_A 214 DQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIV 284 (322)
T ss_dssp CCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTG
T ss_pred cCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 3456699999999999999986 578999999999999994 4444444432 25799999754
No 91
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.60 E-value=1.1e-16 Score=167.71 Aligned_cols=147 Identities=15% Similarity=0.116 Sum_probs=101.4
Q ss_pred CeEEEcc-----ceeEc-cccccccccccccceeecC-------CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceee
Q 021380 76 PVVEARC-----MDEVY-DALAQRLLPTSALASNVNV-------KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (313)
Q Consensus 76 ~~l~v~~-----ls~~y-~~~~~~~~iL~~is~~i~~-------Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~ 142 (313)
++|+++| |++.| ++.. +++|++|++.+ |++++|+||||||||||||+| |++. +-
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~----v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~---~~----- 815 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDF----IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA---VM----- 815 (1022)
T ss_dssp CCEEEEEECCCC------CCCC----CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH---HH-----
T ss_pred ceEEEEeccccEEEEEecCCce----EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH---HH-----
Confidence 4699999 99999 5555 99999999987 999999999999999999999 9986 31
Q ss_pred eCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhh
Q 021380 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL 222 (313)
Q Consensus 143 ~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~a 222 (313)
.+.++||||+.. .+++.+++.. ..+.. + .......++|++|++ ++++++
T Consensus 816 ------aqiG~~Vpq~~~-----~l~v~d~I~~---rig~~-----d-----------~~~~~~stf~~em~~-~a~al~ 864 (1022)
T 2o8b_B 816 ------AQMGCYVPAEVC-----RLTPIDRVFT---RLGAS-----D-----------RIMSGESTFFVELSE-TASILM 864 (1022)
T ss_dssp ------HTTTCCEESSEE-----EECCCSBEEE---ECC-------------------------CHHHHHHHH-HHHHHH
T ss_pred ------hheeEEeccCcC-----CCCHHHHHHH---HcCCH-----H-----------HHhhchhhhHHHHHH-HHHHHH
Confidence 112348998742 3677776521 11110 0 001123456677664 889999
Q ss_pred cccCccEEEEcCcccccCh-----hhHHHHHHhhcC----eEEEEcChHHHHH
Q 021380 223 VGLQHKVVIVDGNYLFLDG-----GVWKDVSSMFDE----KWFIEVDLDTAMQ 266 (313)
Q Consensus 223 l~~~a~~li~d~~~llLDE-----~~~~~l~~l~~~----~i~vtHd~~~~~~ 266 (313)
++.++.++++|++...+|. ..+..+..+.+. +||+|||.+++..
T Consensus 865 la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~ 917 (1022)
T 2o8b_B 865 HATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVED 917 (1022)
T ss_dssp HCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHH
T ss_pred hCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHH
Confidence 9999999999999999997 245556555432 5799999998865
No 92
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.58 E-value=8.6e-16 Score=138.03 Aligned_cols=128 Identities=13% Similarity=0.040 Sum_probs=87.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-CceeeeCCCCCCCeEEEE
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKPPDVATVL 155 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~-~G~i~~~~~~~~~~i~~v 155 (313)
++++++|++. . +|+++| +++|++++|+||||||||||+++|+|+++ |+ +|+|.++|.+. .|+
T Consensus 5 ~~~l~~l~~~----~----vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i----~~~ 67 (261)
T 2eyu_A 5 IPEFKKLGLP----D----KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPI----EYV 67 (261)
T ss_dssp -CCGGGSSCC----T----HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSC----CSC
T ss_pred CCChHHCCCH----H----HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcc----eee
Confidence 4567888753 3 899999 89999999999999999999999999998 87 99998876542 223
Q ss_pred eccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCc
Q 021380 156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN 235 (313)
Q Consensus 156 ~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~ 235 (313)
+++...+ +.+ ..++.. ... -|++|++++..+++++++|++
T Consensus 68 ~~~~~~~------v~q------------------------~~~gl~----~~~------l~~~la~aL~~~p~illlDEp 107 (261)
T 2eyu_A 68 FKHKKSI------VNQ------------------------REVGED----TKS------FADALRAALREDPDVIFVGEM 107 (261)
T ss_dssp CCCSSSE------EEE------------------------EEBTTT----BSC------HHHHHHHHHHHCCSEEEESCC
T ss_pred cCCccee------eeH------------------------HHhCCC----HHH------HHHHHHHHHhhCCCEEEeCCC
Confidence 3221100 000 011110 011 178999999999999999999
Q ss_pred ccccChhhHHHHHHhhcC---eEEEEcChHHH
Q 021380 236 YLFLDGGVWKDVSSMFDE---KWFIEVDLDTA 264 (313)
Q Consensus 236 ~llLDE~~~~~l~~l~~~---~i~vtHd~~~~ 264 (313)
. |++....+.+.... +++++|+.+..
T Consensus 108 ~---D~~~~~~~l~~~~~g~~vl~t~H~~~~~ 136 (261)
T 2eyu_A 108 R---DLETVETALRAAETGHLVFGTLHTNTAI 136 (261)
T ss_dssp C---SHHHHHHHHHHHHTTCEEEEEECCSSHH
T ss_pred C---CHHHHHHHHHHHccCCEEEEEeCcchHH
Confidence 8 87554443333322 46899998743
No 93
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.58 E-value=4.8e-16 Score=136.15 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=95.2
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC--CCceeeeCCCCCC----CeEEEEeccCCCCCcccCCc----cc
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKASSFDSQVKPP----DVATVLPMDGFHLYLSQLDA----ME 171 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p--~~G~i~~~~~~~~----~~i~~v~q~~~~~~~~~ltv----~e 171 (313)
-..++|++++|+||||||||||+++|+|+++ | ..|.|.+.+.+.. +.++|+||+...+. .+++ .+
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~---p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~--~~~~~~~f~E 85 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQP---LYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFK--EMISRDAFLE 85 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSC---TTTEEECCCEECSCCCTTCCBTTTBEECCHHHHH--HHHHTTCEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCC---CCceEEEEEecCCCCCcccccCceEEECCHHHHH--HHHhcCHHHH
Confidence 3578999999999999999999999999997 6 5788877665432 23677887643221 2344 44
Q ss_pred CHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhh
Q 021380 172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (313)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~ 251 (313)
++.+....++. ..+.+.++++ ..+++++| +|......+.+.+
T Consensus 86 ~~~~~~~~yg~----~~~~v~~~l~-----------------------------~G~illLD-----LD~~~~~~i~~~l 127 (219)
T 1s96_A 86 HAEVFGNYYGT----SREAIEQVLA-----------------------------TGVDVFLD-----IDWQGAQQIRQKM 127 (219)
T ss_dssp EEEETTEEEEE----EHHHHHHHHT-----------------------------TTCEEEEE-----CCHHHHHHHHHHC
T ss_pred HHHHHhccCCC----CHHHHHHHHh-----------------------------cCCeEEEE-----ECHHHHHHHHHHc
Confidence 44332222221 1222222222 14778888 8997777777776
Q ss_pred cC---eEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCEEeccCC
Q 021380 252 DE---KWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSID 312 (313)
Q Consensus 252 ~~---~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~~ 312 (313)
.. +++++||++++..|+.+|- .++++++. .++.... .+ .+.....|++|.|.+
T Consensus 128 ~~~~tI~i~th~~~~l~~Rl~~rG--~~~~e~i~-~rl~~a~---~e--~~~~~~~d~~i~Nd~ 183 (219)
T 1s96_A 128 PHARSIFILPPSKIELDRRLRGRG--QDSEEVIA-KRMAQAV---AE--MSHYAEYDYLIVNDD 183 (219)
T ss_dssp TTCEEEEEECSSHHHHHHHHHTTS--CSCHHHHH-HHHHHHH---HH--HTTGGGSSEEEECSS
T ss_pred cCCEEEEEECCCHHHHHHHHHHcC--CCCHHHHH-HHHHHHH---HH--HhhccCCCEEEECcC
Confidence 53 4588999999887765331 34444443 3333211 11 122345688887643
No 94
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.56 E-value=1.2e-16 Score=157.24 Aligned_cols=77 Identities=10% Similarity=0.102 Sum_probs=63.3
Q ss_pred CeEEEccceeEccccccccccccccce-eecCCeEEEEECCCCCCHHHHHHH--HHHHhcccCCCCceeeeCCCCCC---
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPP--- 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~-~i~~Geiv~IiGpNGsGKSTLlk~--L~Gll~~~~p~~G~i~~~~~~~~--- 149 (313)
.+++.+++.+..++.. +|++|+| .|++|++++|+||||||||||+++ ++|+++ |++|.|++++.+..
T Consensus 11 ~~~~~~~~~~~~~g~~----~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~---~~~g~i~v~g~~~~~~~ 83 (525)
T 1tf7_A 11 NNSEHQAIAKMRTMIE----GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE---FDEPGVFVTFEETPQDI 83 (525)
T ss_dssp ---CCSSCCEECCCCT----THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HCCCEEEEESSSCHHHH
T ss_pred CCccccccccccCCch----hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEEEEeCCHHHH
Confidence 3577788877776666 9999999 999999999999999999999999 789998 89999999887631
Q ss_pred ----CeEEEEeccC
Q 021380 150 ----DVATVLPMDG 159 (313)
Q Consensus 150 ----~~i~~v~q~~ 159 (313)
+.++|++|+.
T Consensus 84 ~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 84 IKNARSFGWDLAKL 97 (525)
T ss_dssp HHHHGGGTCCHHHH
T ss_pred HHHHHHcCCChHHh
Confidence 3467777763
No 95
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.52 E-value=4.1e-15 Score=141.94 Aligned_cols=161 Identities=12% Similarity=0.003 Sum_probs=92.4
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc--eeeeCCCCC--CCe
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA--SSFDSQVKP--PDV 151 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G--~i~~~~~~~--~~~ 151 (313)
.+|+++||++.|++.. +++++||+| +|+|+||||||||+++|+|... +..| .+.+..... ...
T Consensus 10 ~~l~~~~l~~~y~~~~----vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~---~~~~~~~~~~~~~~t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYRKS----VKRGFEFTL------MVVGESGLGKSTLINSLFLTDL---YSPEYPGPSHRIKKTVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTTTT----CC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC---CCCCCCSCC-----CCEEEE
T ss_pred CcEEEEecceeECCEE----EecCCCEEE------EEECCCCCcHHHHHHHHhCCCC---CCCCCCCcccCCccceeeee
Confidence 4699999999998877 999999998 9999999999999999999875 5444 222221111 123
Q ss_pred EEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCcc---
Q 021380 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK--- 228 (313)
Q Consensus 152 i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~--- 228 (313)
+++++|+.... ..+++++++.+...... ......+.+.+.. .++.+++||++|+++++.+++
T Consensus 77 i~~v~q~~~~~--~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~~----------~~~~~l~qr~~IaRal~~d~~~~v 141 (418)
T 2qag_C 77 SKVLIKEGGVQ--LLLTIVDTPGFGDAVDN---SNCWQPVIDYIDS----------KFEDYLNAESRVNRRQMPDNRVQC 141 (418)
T ss_dssp EECC------C--EEEEEEECC--------------CHHHHHHHHH----------HHHHHTTTSCC-CCCCCCCC-CCE
T ss_pred EEEEEecCCcc--cceeeeechhhhhhccc---hhhHHHHHHHHHH----------HHHHHHHHHHHHHHHhccCCCeeE
Confidence 66777764322 24789999877543211 1111222222221 344567889999999999999
Q ss_pred EEEEcCcc-cccChhhHHHHHHhhcC--eEEEEcChHHH
Q 021380 229 VVIVDGNY-LFLDGGVWKDVSSMFDE--KWFIEVDLDTA 264 (313)
Q Consensus 229 ~li~d~~~-llLDE~~~~~l~~l~~~--~i~vtHd~~~~ 264 (313)
+|++++|. ..+|+.-.+.+..+... +|+|.|-.|..
T Consensus 142 lL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 142 CLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp EEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSS
T ss_pred EEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCc
Confidence 89999998 68887444455554433 46777766543
No 96
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.50 E-value=2.4e-15 Score=150.25 Aligned_cols=153 Identities=8% Similarity=0.010 Sum_probs=86.1
Q ss_pred eEEEccceeEcccccccccccccc----------ceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCC-CCceeeeCC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSAL----------ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDSQ 145 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~i----------s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p-~~G~i~~~~ 145 (313)
+++++||++.|+.... ++|+.+ +|+++. +||+||||||||||+++|+|++. | ++|.|.++|
T Consensus 10 ~i~~~~l~~~~~~~~r--~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~---P~~sG~vt~~g 81 (608)
T 3szr_A 10 SVAENNLCSQYEEKVR--PCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL---PRGSGIVTRCP 81 (608)
T ss_dssp ----------CHHHHH--HHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCSC
T ss_pred hhhhhhhhHHHHHHHH--HHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC---CCCCCeEEEcC
Confidence 5789999999975321 144433 366654 99999999999999999999987 8 799999887
Q ss_pred CC-----------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCC
Q 021380 146 VK-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG 214 (313)
Q Consensus 146 ~~-----------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGek 214 (313)
.+ ....++|++|+....+ .+++.+++.+..... +... .+..+
T Consensus 82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~--~~tv~e~i~~~~~~~------------------~~~~-------~~~s~ 134 (608)
T 3szr_A 82 LVLKLKKLVNEDKWRGKVSYQDYEIEISD--ASEVEKEINKAQNAI------------------AGEG-------MGISH 134 (608)
T ss_dssp EEEEEEECSSSSCCEEEESCC---CCCCC--HHHHHTTHHHHHHHH------------------HCSS-------SCCCS
T ss_pred EEEEEecCCccccceeEEeeecccccCCC--HHHHHHHHHHHHHHh------------------cCCc-------cccch
Confidence 54 1235788888854322 467888876543221 1000 12234
Q ss_pred CcchhhhhcccCccEEEEcCc------ccccChh----hHHHHHHhhcC-----eEEEEcChHHH
Q 021380 215 DPVEDDILVGLQHKVVIVDGN------YLFLDGG----VWKDVSSMFDE-----KWFIEVDLDTA 264 (313)
Q Consensus 215 qRv~la~al~~~a~~li~d~~------~llLDE~----~~~~l~~l~~~-----~i~vtHd~~~~ 264 (313)
+++.++.+....+.++++|+| +..+|+. +++.+.++... .++++||.+.+
T Consensus 135 ~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 135 ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 556666666667899999999 8899984 44455554322 24899998744
No 97
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.50 E-value=4.1e-15 Score=151.54 Aligned_cols=125 Identities=18% Similarity=0.146 Sum_probs=84.1
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHH
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~ 174 (313)
.+++|+||+ |++++|+||||||||||+|+|+|+... +..|.+... ....+++++|- + ..+++.+|+.
T Consensus 567 ~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~--~~~G~~vpa---~~~~i~~v~~i----~-~~~~~~d~l~ 633 (765)
T 1ewq_A 567 FVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL--AQVGSFVPA---EEAHLPLFDGI----Y-TRIGASDDLA 633 (765)
T ss_dssp CCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH--HTTTCCBSS---SEEEECCCSEE----E-EECCC-----
T ss_pred eEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh--cccCceeeh---hccceeeHHHh----h-ccCCHHHHHH
Confidence 388999999 999999999999999999999998630 566765321 11224444331 1 1245555432
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhc--ccCccEEEEcCc---ccccChh-----hH
Q 021380 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGG-----VW 244 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al--~~~a~~li~d~~---~llLDE~-----~~ 244 (313)
. .+|+|+++++.++.++ +.+++++++|++ +..+|.. ++
T Consensus 634 ~--------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~ 681 (765)
T 1ewq_A 634 G--------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVA 681 (765)
T ss_dssp ---------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred h--------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHH
Confidence 1 2577888888888887 889999999999 8888863 33
Q ss_pred HHHHHhhcCeEEEEcChHHH
Q 021380 245 KDVSSMFDEKWFIEVDLDTA 264 (313)
Q Consensus 245 ~~l~~l~~~~i~vtHd~~~~ 264 (313)
+.+.+.-..++++|||.++.
T Consensus 682 ~~L~~~g~~vl~~TH~~~l~ 701 (765)
T 1ewq_A 682 EALHERRAYTLFATHYFELT 701 (765)
T ss_dssp HHHHHHTCEEEEECCCHHHH
T ss_pred HHHHhCCCEEEEEeCCHHHH
Confidence 33333112357999998875
No 98
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.50 E-value=2.8e-16 Score=150.06 Aligned_cols=143 Identities=12% Similarity=0.017 Sum_probs=91.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCC------
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD------ 150 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~------ 150 (313)
.++++++.+.|+... +|+++ +. .+|++++|+||||||||||+++|+|+++ |++|.|.+.+.+...
T Consensus 143 ~~~l~~Lg~~~~~~~----~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~I~~~ed~ie~~~~~~~ 213 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHD----NFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELN---SSERNILTVEDPIEFDIDGIG 213 (418)
T ss_dssp CCCGGGSCCCHHHHH----HHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSCEEEEESSCCSCCSSSE
T ss_pred CCCHHHcCCCHHHHH----HHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEEecccchhccCCcc
Confidence 577889999887766 88988 64 8999999999999999999999999998 999999876654210
Q ss_pred ------eEEEEe---------ccCCCCCcc----cCCcccCHHHHHHhcCCC-----CCccHHHHHHHHHHhhcCCCccC
Q 021380 151 ------VATVLP---------MDGFHLYLS----QLDAMEDPKEAHARRGAP-----WTFNPLLLLNCLKNLRNQGSVYA 206 (313)
Q Consensus 151 ------~i~~v~---------q~~~~~~~~----~ltv~e~l~~~~~~~~~~-----~~~~~~~~~~~l~~l~~~~~~~~ 206 (313)
.+++.+ |++...... ..|+.+++.... .+.. ...+...+...|..++......+
T Consensus 214 q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~--tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~~ 291 (418)
T 1p9r_A 214 QTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASL--TGHLVMSTLHTNTAVGAVTRLRDMGIEPFLIS 291 (418)
T ss_dssp EEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHH--TTCEEEEEECCSSSHHHHHHHHHHTCCHHHHH
T ss_pred eEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHH--hCCCcccccchhhHHHHHHHHHHcCCcHHHHH
Confidence 122222 443211000 124444444332 1210 11122233344566664333355
Q ss_pred CCCCccCCCcchhhhhcccCccEEEE
Q 021380 207 PSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 207 ~~LSgGekqRv~la~al~~~a~~li~ 232 (313)
..|||||+|| |+++++.++++...
T Consensus 292 ~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 292 SSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHH--hhhhhcCCCCccCC
Confidence 5899999999 76666666666543
No 99
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.49 E-value=1.1e-14 Score=143.29 Aligned_cols=147 Identities=12% Similarity=0.045 Sum_probs=98.2
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEe
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP 156 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~ 156 (313)
.+++++++..|++.. .+| +..+.+|++++|+|+||||||||++.++|+.. +. |+ +.+.+.+
T Consensus 257 ~~~~~~l~~g~~~ld---~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~~-G~---------~vi~~~~ 317 (525)
T 1tf7_A 257 RSSNVRVSSGVVRLD---EMC---GGGFFKDSIILATGATGTGKTLLVSRFVENAC---AN-KE---------RAILFAY 317 (525)
T ss_dssp CCCCCEECCSCHHHH---HHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH---TT-TC---------CEEEEES
T ss_pred ccccceeecChHHHH---HHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---hC-CC---------CEEEEEE
Confidence 456677776664311 033 44899999999999999999999999999997 64 43 1134455
Q ss_pred ccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEEcC
Q 021380 157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234 (313)
Q Consensus 157 q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~ 234 (313)
++.. ..+..+ ....+. +. .++ ...+ ...+.++..||+||+||+.+++++..+++++++|
T Consensus 318 ee~~------~~l~~~----~~~~g~----~~---~~~-~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD- 378 (525)
T 1tf7_A 318 EESR------AQLLRN----AYSWGM----DF---EEM-ERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID- 378 (525)
T ss_dssp SSCH------HHHHHH----HHTTSC----CH---HHH-HHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-
T ss_pred eCCH------HHHHHH----HHHcCC----CH---HHH-HhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-
Confidence 5521 011111 111221 11 122 2232 2345566799999999999999999999999999
Q ss_pred cccccChh-----hHHHHHHhhc----C---eEEEEcCh
Q 021380 235 NYLFLDGG-----VWKDVSSMFD----E---KWFIEVDL 261 (313)
Q Consensus 235 ~~llLDE~-----~~~~l~~l~~----~---~i~vtHd~ 261 (313)
++..||.. ..+.+.+++. . +++++||.
T Consensus 379 p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 379 SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 99999986 5555444332 2 46999998
No 100
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.46 E-value=8.3e-15 Score=129.22 Aligned_cols=61 Identities=20% Similarity=0.179 Sum_probs=44.0
Q ss_pred CeEEEccceeEccccccccccccccc-eeecCCeEEEEECCCCCCHHHHHHHHH--HHhcccCCCCceeeeCCC
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALA-SNVNVKHIVGLAGPPGAGKSTLAAEVV--RRINKIWPQKASSFDSQV 146 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is-~~i~~Geiv~IiGpNGsGKSTLlk~L~--Gll~~~~p~~G~i~~~~~ 146 (313)
.++++++++..|.+ |+++- =.|++|++++|+||||||||||+++|+ |++. +..|.+++.+.
T Consensus 5 ~~~~~~~i~tg~~~-------lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~---~~~~~~~~~~~ 68 (251)
T 2ehv_A 5 AYQPVRRVKSGIPG-------FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE---YGEPGVFVTLE 68 (251)
T ss_dssp ---CCCEECCSCTT-------TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH---HCCCEEEEESS
T ss_pred cccccceeecCCHh-------HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEEcc
Confidence 35777888777753 33331 179999999999999999999999999 7745 66666665543
No 101
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.46 E-value=1.2e-14 Score=133.42 Aligned_cols=138 Identities=14% Similarity=-0.017 Sum_probs=86.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC--------------CeEEEEeccCCCCCcccCCccc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------------DVATVLPMDGFHLYLSQLDAME 171 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~--------------~~i~~v~q~~~~~~~~~ltv~e 171 (313)
+|++++|+||||||||||+++|+|+++ |++|+|.+.+.+.. ..++|++|+.... +.+++.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~---~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~--p~~~v~~ 175 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTD--SAALAYD 175 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCC--HHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCC--HHHHHHH
Confidence 799999999999999999999999999 99999999887632 1378888885322 2467777
Q ss_pred CHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh----hhHHHH
Q 021380 172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----GVWKDV 247 (313)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE----~~~~~l 247 (313)
++.+.... +.. . .+++..+.. +.....++...+||++++++++..+..+++ .||. ..++.+
T Consensus 176 ~v~~~~~~-~~d--~------~llDt~G~~-~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~ 240 (304)
T 1rj9_A 176 AVQAMKAR-GYD--L------LFVDTAGRL-HTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQA 240 (304)
T ss_dssp HHHHHHHH-TCS--E------EEECCCCCC-TTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHH
T ss_pred HHHHHHhC-CCC--E------EEecCCCCC-CchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHH
Confidence 77654321 100 0 001111111 111111222337899998888888873332 4554 344444
Q ss_pred HHhhc----CeEEEEcChHH
Q 021380 248 SSMFD----EKWFIEVDLDT 263 (313)
Q Consensus 248 ~~l~~----~~i~vtHd~~~ 263 (313)
..+.+ .++++||+.+.
T Consensus 241 ~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 241 KKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHcCCcEEEEECCccc
Confidence 44432 35899998544
No 102
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.44 E-value=1.4e-14 Score=131.90 Aligned_cols=152 Identities=11% Similarity=-0.056 Sum_probs=85.3
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc-eeee-CCCCCC----CeEEEEeccCCCCCcccCCc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSFD-SQVKPP----DVATVLPMDGFHLYLSQLDA 169 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G-~i~~-~~~~~~----~~i~~v~q~~~~~~~~~ltv 169 (313)
+|+++++.+++|++++|+||||||||||++.|+|.+. |++| .|.+ ++.... +++..+.+.. .++.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~---~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~------~~~~ 94 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG---TAMGKKVGLAMLEESVEETAEDLIGLHNRV------RLRQ 94 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH---HTSCCCEEEEESSSCHHHHHHHHHHHHTTC------CGGG
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH---HHcCCeEEEEeCcCCHHHHHHHHHHHHcCC------Chhh
Confidence 8999999999999999999999999999999999998 8777 5533 221110 0011011110 0111
Q ss_pred ccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccC-CCcchhhhhcccCccEEEEcCccccc------Ch-
Q 021380 170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV-GDPVEDDILVGLQHKVVIVDGNYLFL------DG- 241 (313)
Q Consensus 170 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGe-kqRv~la~al~~~a~~li~d~~~llL------DE- 241 (313)
.+++.... . ........+.++++.........+..+|.++ +|++. ++++..+++++++|++..++ |.
T Consensus 95 ~~~l~~~~-~---~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~ 169 (296)
T 1cr0_A 95 SDSLKREI-I---ENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDER 169 (296)
T ss_dssp CHHHHHHH-H---HHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------C
T ss_pred ccccccCC-C---CHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHH
Confidence 11121110 0 0000111122222211111122234678777 66666 78888999999999999854 33
Q ss_pred ----hhHHHHHHhhc----CeEEEEcCh
Q 021380 242 ----GVWKDVSSMFD----EKWFIEVDL 261 (313)
Q Consensus 242 ----~~~~~l~~l~~----~~i~vtHd~ 261 (313)
.+.+.|.++.. .+|+++|+.
T Consensus 170 ~~~~~i~~~L~~la~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 170 KMIDNLMTKLKGFAKSTGVVLVVICHLK 197 (296)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEecC
Confidence 24444544433 256999995
No 103
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.44 E-value=9.6e-15 Score=125.00 Aligned_cols=130 Identities=13% Similarity=0.037 Sum_probs=83.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~ 180 (313)
|++++|+||||||||||+++|+|++ +++| |.++|.. ..+.++|++|+.. . ......++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~----~~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g--~~~~l~~~------- 64 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL----KSSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--G--TRGPLSRV------- 64 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH----HHTT-CCCEEEECCEEETTSSEEEEEEEETT--S--CEEEEEEC-------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc----ccCC-EEEcCEecchhHhhhceEEEEEEecc--c--ceehhhcc-------
Confidence 7899999999999999999999999 4568 8776632 2456788888731 1 11111111
Q ss_pred CCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchh-hh---hcccCccEEEEcC--cccccChhhHHHHHHhhcC-
Q 021380 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED-DI---LVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE- 253 (313)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~l-a~---al~~~a~~li~d~--~~llLDE~~~~~l~~l~~~- 253 (313)
....... ........+...+|+||++++.. .. |+..+++++++|+ ++-.+|+.+++.|.++++.
T Consensus 65 ~~~~~~~---------~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~ 135 (189)
T 2i3b_A 65 GLEPPPG---------KRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP 135 (189)
T ss_dssp CCCCCSS---------SCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS
T ss_pred cccCCcc---------ccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCC
Confidence 0000000 00001122334689999988843 33 4677888899888 7777888888888888753
Q ss_pred --eEE--EE--cCh
Q 021380 254 --KWF--IE--VDL 261 (313)
Q Consensus 254 --~i~--vt--Hd~ 261 (313)
+|+ ++ ||.
T Consensus 136 ~~~ilgti~vsh~~ 149 (189)
T 2i3b_A 136 GTIILGTIPVPKGK 149 (189)
T ss_dssp SCCEEEECCCCCSS
T ss_pred CcEEEEEeecCCCC
Confidence 343 34 986
No 104
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.42 E-value=8.2e-15 Score=151.61 Aligned_cols=129 Identities=12% Similarity=0.072 Sum_probs=82.2
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHH
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~ 174 (313)
.+++|+||++++|++++|+||||||||||||+|+++.-. +..| .+++.... .+.+.+.+
T Consensus 661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~--aq~g-------------~~vpa~~~-----~i~~~d~i- 719 (918)
T 3thx_B 661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM--AQIG-------------SYVPAEEA-----TIGIVDGI- 719 (918)
T ss_dssp SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--HHHT-------------CCBSSSEE-----EEECCSEE-
T ss_pred eecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--hhcC-------------ccccchhh-----hhhHHHHH-
Confidence 388999999999999999999999999999999876530 1111 11111100 00000000
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhh--cCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChh----hH-HHH
Q 021380 175 EAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----VW-KDV 247 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~--~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~----~~-~~l 247 (313)
+..++ .........||+||+|++.++.+ +.++.++++|++...+|.. +. ..+
T Consensus 720 --------------------~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il 778 (918)
T 3thx_B 720 --------------------FTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATL 778 (918)
T ss_dssp --------------------EEEC----------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred --------------------HHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 00111 11123346789999999999777 7789999999999999982 22 334
Q ss_pred HHhhc----CeEEEEcChHHHH
Q 021380 248 SSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 248 ~~l~~----~~i~vtHd~~~~~ 265 (313)
..+.+ .++|+|||++.+.
T Consensus 779 ~~L~~~~g~tvl~vTH~~el~~ 800 (918)
T 3thx_B 779 EYFIRDVKSLTLFVTHYPPVCE 800 (918)
T ss_dssp HHHHHTTCCEEEEECSCGGGGG
T ss_pred HHHHHhcCCeEEEEeCcHHHHH
Confidence 44432 2579999988764
No 105
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.41 E-value=8.7e-14 Score=119.74 Aligned_cols=179 Identities=15% Similarity=0.196 Sum_probs=88.6
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCC
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA 182 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~ 182 (313)
...+|++++|+|+||||||||++.|+++++ +..|.|.+ +.+|.+......... .....+....
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~---~~~~~v~~-----------~~~d~~~~~~~~~~~-~~~~~~~~~~-- 80 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR---EQGISVCV-----------FHMDDHIVERAKRYH-TGNEEWFEYY-- 80 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH---HTTCCEEE-----------EEGGGGCCCHHHHSS-SSSCHHHHHH--
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh---hcCCeEEE-----------eccCcccCCHHHHHh-cCCCCccCCC--
Confidence 467899999999999999999999999997 66665543 344433221100000 0000011110
Q ss_pred CCCccHHHHHHH-HHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcCh
Q 021380 183 PWTFNPLLLLNC-LKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDL 261 (313)
Q Consensus 183 ~~~~~~~~~~~~-l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~ 261 (313)
+...+...+.+. +..+........+.+..-...+.. .........++++|+++++-. .+.++++.+|+++-+.
T Consensus 81 ~~~~d~~~l~~~v~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~-----~~~~~~d~~i~v~~~~ 154 (201)
T 1rz3_A 81 YLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRK-----EWRPFFDFVVYLDCPR 154 (201)
T ss_dssp HTSSCHHHHHHHTGGGTTTCSEEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTST-----TTGGGCSEEEEECCC-
T ss_pred ccccCHHHHHHHHHHHHhcCCccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccH-----HHHhhcCEEEEEeCCH
Confidence 123344444332 222222222222223222111111 111223467899999987643 2445677789999999
Q ss_pred HHHHHHHHhhhhccCChhHHHHHHHHhcCCchHH-HHHhh--cCCCCEEeccC
Q 021380 262 DTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAE-LIMKS--KKNADLVIKSI 311 (313)
Q Consensus 262 ~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~-~i~~~--~~~aD~i~~~~ 311 (313)
++..+|++.|. +.+..++...+.+.++ |+.+. +..||+||+|.
T Consensus 155 ~~~~~R~~~R~-------~~~~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 155 EIRFARENDQV-------KQNIQKFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred HHHHHHHhcCC-------HHHHHHHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 88887887665 2223334334445555 77665 68899999875
No 106
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.40 E-value=5.2e-14 Score=120.85 Aligned_cols=164 Identities=10% Similarity=0.003 Sum_probs=80.7
Q ss_pred CeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh-----cccCCCCceeeeCCCCC-C
Q 021380 76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASSFDSQVKP-P 149 (313)
Q Consensus 76 ~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll-----~~~~p~~G~i~~~~~~~-~ 149 (313)
.+|+++|+++.|+. . ++++ |.+.+|.+++|+|+||||||||++.|+|.. . |+.|.+...+... .
T Consensus 2 ~~l~~~~~~~~~~~-~----~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~---~~~G~~~~~~~~~~~ 71 (210)
T 1pui_A 2 TNLNYQQTHFVMSA-P----DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS---KTPGRTQLINLFEVA 71 (210)
T ss_dssp ---------CEEEE-S----SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEE
T ss_pred cchhhhhhhheeec-C----CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcccccc---CCCccceeeEEEEec
Confidence 36899999999974 4 7887 999999999999999999999999999987 5 7888765421000 0
Q ss_pred CeEEEEeccCCCCCcccCCccc----CHHHHHHh-c---------C--CCCCccHHHHHHHHHHhhcC---CCccCCCCC
Q 021380 150 DVATVLPMDGFHLYLSQLDAME----DPKEAHAR-R---------G--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFD 210 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e----~l~~~~~~-~---------~--~~~~~~~~~~~~~l~~l~~~---~~~~~~~LS 210 (313)
....++...++..........+ .+...... . + .+.......+..++...+.. ...++..+|
T Consensus 72 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 72 DGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA 151 (210)
T ss_dssp TTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred CCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCC
Confidence 0011121111100000000000 01111110 0 0 01111222344444444321 133556899
Q ss_pred ccCCCc-chhhhhcccCccEEEEcCcccccChhhHHHHHH
Q 021380 211 HGVGDP-VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (313)
Q Consensus 211 gGekqR-v~la~al~~~a~~li~d~~~llLDE~~~~~l~~ 249 (313)
+||+|| +..+++++..+..++.+.++..+|....+.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~ 191 (210)
T 1pui_A 152 SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQ 191 (210)
T ss_dssp HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHH
Confidence 999999 778777776666677788888888844444433
No 107
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.39 E-value=5e-15 Score=129.01 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=37.1
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++++.++..+..... +|.+ -|++|++++|+||||||||||+++|+|++.
T Consensus 2 ~~~~~i~tG~~~LD~---~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 2 ATIGRISTGSKSLDK---LLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp CCCCEECCSCHHHHH---HTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcCCccCCCChhHHh---HhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445666666643210 3322 689999999999999999999999999876
No 108
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.36 E-value=2.8e-14 Score=133.26 Aligned_cols=117 Identities=13% Similarity=-0.015 Sum_probs=72.4
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeC-CC----CCCCeEEEEeccCCCCCcccCCcc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS-QV----KPPDVATVLPMDGFHLYLSQLDAM 170 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~-~~----~~~~~i~~v~q~~~~~~~~~ltv~ 170 (313)
-++++++.+ +|++++|+||||||||||+++|+|++.. |++|+|.+. |. .....+++++|+...+. ..++.
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~d--tpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNE--ILTNDVSNVSGLGQHTTTAARLYHFPHGGDVID--SPGVR 279 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSC--CCCC-------------CCCEEEECTTSCEEEE--CHHHH
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccc--cccCCccccCCCCccceEEEEEEEECCCCEecC--cccHH
Confidence 356677654 7999999999999999999999998741 678999875 42 23446788888754322 24555
Q ss_pred cCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhc
Q 021380 171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILV 223 (313)
Q Consensus 171 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al 223 (313)
++. .++.+.......+.++++.++. ..+.....|| ||+||++++.++
T Consensus 280 e~~-----l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFG-----LWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCC-----CCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhh-----hcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 531 1111111112234455666663 3566777999 999999995543
No 109
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.35 E-value=2.3e-12 Score=119.79 Aligned_cols=60 Identities=10% Similarity=0.089 Sum_probs=46.9
Q ss_pred ccCCCCCccCCC------cchhhhhcccCccEEEEcCcccccChh----hHHHHHHhhcC---eEEEEcChHH
Q 021380 204 VYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFDE---KWFIEVDLDT 263 (313)
Q Consensus 204 ~~~~~LSgGekq------Rv~la~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~~---~i~vtHd~~~ 263 (313)
+++..||||||| |+++|++++.++++|++|+|+..||+. +.+.|.++... +|++|||.+.
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~ 316 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL 316 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH
Confidence 456799999999 567778888899999999999999994 44455554432 5799999654
No 110
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.35 E-value=4.7e-14 Score=132.13 Aligned_cols=77 Identities=13% Similarity=-0.029 Sum_probs=56.3
Q ss_pred ccCC-CCCccCCCcchhhhhcc---------cCccEEEEcCcccccChhhHHHHHHhh----cCeEEEEcChHHHHHHHH
Q 021380 204 VYAP-SFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMF----DEKWFIEVDLDTAMQRVL 269 (313)
Q Consensus 204 ~~~~-~LSgGekqRv~la~al~---------~~a~~li~d~~~llLDE~~~~~l~~l~----~~~i~vtHd~~~~~~rvi 269 (313)
.++. .||+||+||++||++++ ..+.+|++|+++.-||+...+.+.+++ ...|++||+ +....+++
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~~~~~i~ 338 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-APGAALTL 338 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CTTCSEEE
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cccCCEEE
Confidence 3555 79999999999999999 899999999999999995444444433 334678885 33111333
Q ss_pred ----hhhhccCChhHH
Q 021380 270 ----KRHISTGKPPDV 281 (313)
Q Consensus 270 ----gr~v~~G~~~e~ 281 (313)
|+++..|++.++
T Consensus 339 ~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 339 RAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEETTEEEECCCTTTS
T ss_pred EEECCEEEecCCHHHH
Confidence 888888887664
No 111
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.34 E-value=1.5e-12 Score=121.91 Aligned_cols=116 Identities=14% Similarity=0.072 Sum_probs=76.0
Q ss_pred cccccce-------eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-CceeeeCCCCC----CCeEEEEeccCCCCC
Q 021380 96 PTSALAS-------NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKP----PDVATVLPMDGFHLY 163 (313)
Q Consensus 96 iL~~is~-------~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~-~G~i~~~~~~~----~~~i~~v~q~~~~~~ 163 (313)
.|+++.+ .+.+|++++|+||||||||||+++|+|+++ |+ .|.|...+.+. ....+++.|....
T Consensus 105 ~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~---~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~-- 179 (356)
T 3jvv_A 105 TMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN---NTKYHHILTIEDPIEFVHESKKCLVNQREVH-- 179 (356)
T ss_dssp CTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH---HHCCCEEEEEESSCCSCCCCSSSEEEEEEBT--
T ss_pred CHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc---CCCCcEEEEccCcHHhhhhccccceeeeeec--
Confidence 5667666 778899999999999999999999999998 76 45553322111 0001111111000
Q ss_pred cccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhh
Q 021380 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV 243 (313)
Q Consensus 164 ~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~ 243 (313)
. .. ++..+ +|++++..+++++++|++. |++.
T Consensus 180 ------------------~-~~-----------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~ 210 (356)
T 3jvv_A 180 ------------------R-DT-----------------------LGFSE----ALRSALREDPDIILVGEMR---DLET 210 (356)
T ss_dssp ------------------T-TB-----------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHH
T ss_pred ------------------c-cc-----------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHH
Confidence 0 00 00000 8888888889999999987 7777
Q ss_pred HHHHHHhhcC---eEEEEcChHHHH
Q 021380 244 WKDVSSMFDE---KWFIEVDLDTAM 265 (313)
Q Consensus 244 ~~~l~~l~~~---~i~vtHd~~~~~ 265 (313)
.+.+.++... +++++|+.+.+.
T Consensus 211 ~~~~~~~~~~G~~vl~t~H~~~~~~ 235 (356)
T 3jvv_A 211 IRLALTAAETGHLVFGTLHTTSAAK 235 (356)
T ss_dssp HHHHHHHHHTTCEEEEEESCSSHHH
T ss_pred HHHHHHHHhcCCEEEEEEccChHHH
Confidence 7776666543 468999998773
No 112
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.32 E-value=6.1e-14 Score=145.44 Aligned_cols=129 Identities=12% Similarity=0.096 Sum_probs=77.0
Q ss_pred ccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHH
Q 021380 95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 95 ~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~ 174 (313)
.+++|++|++.+|++++|+||||||||||+|+|++..-- +..| .+++..... +.+.+.
T Consensus 650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~--aq~G-------------~~vpa~~~~-----~~~~d~-- 707 (934)
T 3thx_A 650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLM--AQIG-------------CFVPCESAE-----VSIVDC-- 707 (934)
T ss_dssp CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHH--HHHT-------------CCBSEEEEE-----EECCSE--
T ss_pred eecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHH--HhcC-------------Ccccccccc-----chHHHH--
Confidence 378899999999999999999999999999999544310 1112 112211100 000000
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhc--ccCccEEEEcCcccccCh----hh-HHHH
Q 021380 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGNYLFLDG----GV-WKDV 247 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al--~~~a~~li~d~~~llLDE----~~-~~~l 247 (313)
++..++.. +.....+|+++.++..++.++ +.++.++++|++...+|. .+ +..+
T Consensus 708 -------------------i~~~ig~~-d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il 767 (934)
T 3thx_A 708 -------------------ILARVGAG-DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAIS 767 (934)
T ss_dssp -------------------EEEECC----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHH
T ss_pred -------------------HHHhcCch-hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 00011100 111234666666666666666 788999999999999998 22 3334
Q ss_pred HHhhc----CeEEEEcChHHHH
Q 021380 248 SSMFD----EKWFIEVDLDTAM 265 (313)
Q Consensus 248 ~~l~~----~~i~vtHd~~~~~ 265 (313)
..+.+ .++|+|||.+...
T Consensus 768 ~~l~~~~g~~vl~aTH~~el~~ 789 (934)
T 3thx_A 768 EYIATKIGAFCMFATHFHELTA 789 (934)
T ss_dssp HHHHHTTCCEEEEEESCGGGGG
T ss_pred HHHHhcCCCEEEEEcCcHHHHH
Confidence 44432 2579999987654
No 113
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.29 E-value=6.3e-12 Score=113.40 Aligned_cols=142 Identities=15% Similarity=0.099 Sum_probs=86.4
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--CCeEEEEeccCCCCCcccCCcccCHHHHHHhc
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~ 180 (313)
.+++|++++|+||||||||||++.|++.+. .|.+.+ |... ...+.|+..+.. . +.+.......
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~~-g~~~~~~~~v~~~~~e~~--------~-~~~~~r~~~~ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDLL-EVGELPTGPVIYLPAEDP--------P-TAIHHRLHAL 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCTT-CCCCCCCCCEEEEESSSC--------H-HHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCcC-CCccCCCccEEEEECCCC--------H-HHHHHHHHHH
Confidence 478999999999999999999999999774 365544 3222 223555554321 0 1110001111
Q ss_pred CCCCCccHHHHHHHHHHhhc--CCCccCCCCCccCCCcchhhhhcccCccEEEEcCccc--ccCh-------hhHHHHHH
Q 021380 181 GAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL--FLDG-------GVWKDVSS 249 (313)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~l--lLDE-------~~~~~l~~ 249 (313)
+. ........++++.+.. ..+..+..||+|+.+++ ++++.+++++++|++.. .+|+ .++..|..
T Consensus 91 g~--~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~ 165 (279)
T 1nlf_A 91 GA--HLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEA 165 (279)
T ss_dssp HT--TSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHH
T ss_pred Hh--hcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHH
Confidence 11 1223344556666652 34556779999997765 45667899999999998 6786 34444554
Q ss_pred hhc----CeEEEEcChHHH
Q 021380 250 MFD----EKWFIEVDLDTA 264 (313)
Q Consensus 250 l~~----~~i~vtHd~~~~ 264 (313)
+.+ .+|+++|+....
T Consensus 166 l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 166 IAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHCCEEEEEEEC----
T ss_pred HHHHcCCEEEEEecCCCcc
Confidence 432 257999998765
No 114
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.29 E-value=1.5e-13 Score=115.75 Aligned_cols=101 Identities=11% Similarity=-0.025 Sum_probs=61.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCC---CceeeeCCCCCC------------CeEE----EEeccCCCCCcccCC
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KASSFDSQVKPP------------DVAT----VLPMDGFHLYLSQLD 168 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~~~~p~---~G~i~~~~~~~~------------~~i~----~v~q~~~~~~~~~lt 168 (313)
++++|+|+||||||||+++|+|+++ |+ .|.|.+++.+.. +.++ +++|+.+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~---~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~------ 73 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR---ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF------ 73 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH---HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh---hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE------
Confidence 5899999999999999999999998 87 899999876411 1233 455543211
Q ss_pred cccCHHHHHHhcCCCCCccHHHHHHHHHH-hhcCCCccCC-CCCccCCCcchhhhhcccCccE
Q 021380 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAP-SFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 169 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~-~LSgGekqRv~la~al~~~a~~ 229 (313)
+.+ ........+.+++.. +. ..+..+. .|||||+||++||+++..++.+
T Consensus 74 i~~-----------~~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i 124 (171)
T 2f1r_A 74 IRR-----------VSEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHF 124 (171)
T ss_dssp EEE-----------CCHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred Eec-----------CChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence 000 000000134455555 43 3333332 5999999999997777665543
No 115
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.28 E-value=1.8e-13 Score=127.22 Aligned_cols=66 Identities=23% Similarity=0.222 Sum_probs=59.9
Q ss_pred CCeEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 75 ~~~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
|.+|+++++++.|+... +|+++||++.+|++++|+|+||||||||+++|+|++. |++|+|.+.+.+
T Consensus 27 i~~ie~~~~~~~~~~~~----~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~---~~~g~v~i~~~d 92 (337)
T 2qm8_A 27 ITLAESRRADHRAAVRD----LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT---AAGHKVAVLAVD 92 (337)
T ss_dssp HHHHTCSSHHHHHHHHH----HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEEEEC
T ss_pred HHHHeeCCcccccChHH----HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh---hCCCEEEEEEEc
Confidence 44688999999998766 9999999999999999999999999999999999999 999999876543
No 116
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.27 E-value=6.6e-13 Score=124.60 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=59.1
Q ss_pred EEccceeE---ccccccccccc---------cccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 79 EARCMDEV---YDALAQRLLPT---------SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 79 ~v~~ls~~---y~~~~~~~~iL---------~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
+++++++. |++.. ..+| +++||.|++|++++|+||||||||||+++|+|+++ |++|.|.++|.
T Consensus 137 ~f~~v~f~~~~Y~~~~--~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~---~~~g~I~ie~~ 211 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFE--QELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP---FDQRLITIEDV 211 (361)
T ss_dssp TTSCCCCSCSCCCHHH--HHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC---TTSCEEEEESS
T ss_pred CcCccccccccccchh--HHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC---CCceEEEECCc
Confidence 56788877 75311 1144 99999999999999999999999999999999999 99999999874
Q ss_pred C------CCCeEEEEe-ccC
Q 021380 147 K------PPDVATVLP-MDG 159 (313)
Q Consensus 147 ~------~~~~i~~v~-q~~ 159 (313)
. ....+++++ |+.
T Consensus 212 ~e~~~~~~~~~v~~v~~q~~ 231 (361)
T 2gza_A 212 PELFLPDHPNHVHLFYPSEA 231 (361)
T ss_dssp SCCCCTTCSSEEEEECC---
T ss_pred cccCccccCCEEEEeecCcc
Confidence 3 234577777 653
No 117
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.27 E-value=1.2e-12 Score=119.95 Aligned_cols=112 Identities=12% Similarity=-0.024 Sum_probs=74.3
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee---CCCCCC--------CeEEEEeccCCCC--Cc-ccCC
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---SQVKPP--------DVATVLPMDGFHL--YL-SQLD 168 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~---~~~~~~--------~~i~~v~q~~~~~--~~-~~lt 168 (313)
++..|++++|+||||||||||+|+|+ ++. |++|+|.+ +|.... ..++|++|++... .. +.+|
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~---~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt 236 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE---LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVK 236 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC---CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSC
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh---CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCC
Confidence 46689999999999999999999999 888 99999998 775421 1378999986322 11 3578
Q ss_pred cccCH--HHH----H--HhcCC-CCCccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchh
Q 021380 169 AMEDP--KEA----H--ARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED 219 (313)
Q Consensus 169 v~e~l--~~~----~--~~~~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~l 219 (313)
+ +++ .+. . ...+. ........+.++++.++.. .+.++..|||..++++.+
T Consensus 237 ~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~ 298 (302)
T 2yv5_A 237 P-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKEL 298 (302)
T ss_dssp G-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHH
T ss_pred H-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8 777 333 1 12231 2233345678888888854 245666899877777777
No 118
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.26 E-value=2.2e-13 Score=133.23 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=46.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
++++++|.+++|++++|+||||||||||+++|+|+++ |++|.|.+.|..
T Consensus 249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~giitied~~ 297 (511)
T 2oap_1 249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCEEEEESSC
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCEEEEcCcc
Confidence 7889999999999999999999999999999999999 999999988754
No 119
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.26 E-value=1.5e-12 Score=111.36 Aligned_cols=31 Identities=26% Similarity=0.564 Sum_probs=26.4
Q ss_pred ceeecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 101 s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
|+++.+|++++|+||||||||||+++|+|++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 5778899999999999999999999999997
No 120
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.26 E-value=8e-13 Score=122.37 Aligned_cols=69 Identities=14% Similarity=0.061 Sum_probs=52.1
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCC--------------eEEEEeccCCCCCcccCC
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD--------------VATVLPMDGFHLYLSQLD 168 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~--------------~i~~v~q~~~~~~~~~lt 168 (313)
..++|++++|+||||||||||+++|+|+++ |++|+|.+.+.+..+ .+.+++|.... .+.++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~--~p~~~ 199 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK---NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGA--DPAAV 199 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTC--CHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccC--CHHHH
Confidence 447899999999999999999999999999 999999987765321 14467766332 22356
Q ss_pred cccCHHHH
Q 021380 169 AMEDPKEA 176 (313)
Q Consensus 169 v~e~l~~~ 176 (313)
+++|+.+.
T Consensus 200 v~e~l~~~ 207 (328)
T 3e70_C 200 AYDAIQHA 207 (328)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
No 121
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.25 E-value=2.2e-13 Score=127.88 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=41.7
Q ss_pred cccccceeecC--CeEEEEECCCCCCHHHHHHHHHHHhcccCCCC----ceeeeC
Q 021380 96 PTSALASNVNV--KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK----ASSFDS 144 (313)
Q Consensus 96 iL~~is~~i~~--Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~----G~i~~~ 144 (313)
+.+.|+++|.+ |++++|+||||||||||+++|+|+++ |++ |++.++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~---~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN---TTSAWEYGREFVF 208 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT---CEEECCTTHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC---CCcchhhHHHHHH
Confidence 45679999999 99999999999999999999999998 888 887663
No 122
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.24 E-value=2e-12 Score=132.45 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=75.6
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE 175 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~ 175 (313)
+++|++|+ ++|++++|+||||||||||+|+|+|+... ...|...-. ....++++++- + ..+++.+++..
T Consensus 597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~--~q~G~~vpa---~~~~i~~~~~i----~-~~~~~~d~l~~ 665 (800)
T 1wb9_A 597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM--AYIGSYVPA---QKVEIGPIDRI----F-TRVGAADDLAS 665 (800)
T ss_dssp CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH--HTTTCCBSS---SEEEECCCCEE----E-EEEC-------
T ss_pred eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH--HhcCcccch---hcccceeHHHH----H-hhCCHHHHHHh
Confidence 89999999 99999999999999999999999998630 223321100 00112222221 1 12334443322
Q ss_pred HHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh----h-hHHHHHHh
Q 021380 176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG----G-VWKDVSSM 250 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE----~-~~~~l~~l 250 (313)
. ...+|++|++ +..+...+.++.++++|++...+|. . .+..+..+
T Consensus 666 ~-----------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l 715 (800)
T 1wb9_A 666 G-----------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENL 715 (800)
T ss_dssp ---------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHH
T ss_pred h-----------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHH
Confidence 1 1234445443 3333444678999999999888887 2 24455555
Q ss_pred hc----CeEEEEcChHHHH
Q 021380 251 FD----EKWFIEVDLDTAM 265 (313)
Q Consensus 251 ~~----~~i~vtHd~~~~~ 265 (313)
.+ .++++|||.+...
T Consensus 716 ~~~~g~~vl~~TH~~el~~ 734 (800)
T 1wb9_A 716 ANKIKALTLFATHYFELTQ 734 (800)
T ss_dssp HHTTCCEEEEECSCGGGGG
T ss_pred HhccCCeEEEEeCCHHHHH
Confidence 43 2579999987653
No 123
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.24 E-value=3.7e-13 Score=114.22 Aligned_cols=158 Identities=9% Similarity=-0.079 Sum_probs=74.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC--CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCC
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW 184 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~--~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~ 184 (313)
|++++|+||||||||||+++|++ +.+|.+.+++.... ..++++++... .....++.+++.+....+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~------~~~g~~~i~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 73 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA------QLDNSAYIEGDIINHMVVGGYRPPWES--DELLALTWKNITDLTVNFLLAQ 73 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH------HSSSEEEEEHHHHHTTCCTTCCCGGGC--HHHHHHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhc------ccCCeEEEcccchhhhhccccccCccc--hhHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999987 45677777653211 11233333321 1112344555444322110000
Q ss_pred -Cc--cHHHHHHHHHHhhcCCCccCCCC--CccCCCcchhhhhcccCccEEEEcCccc----ccChhh---HHHHHHhhc
Q 021380 185 -TF--NPLLLLNCLKNLRNQGSVYAPSF--DHGVGDPVEDDILVGLQHKVVIVDGNYL----FLDGGV---WKDVSSMFD 252 (313)
Q Consensus 185 -~~--~~~~~~~~l~~l~~~~~~~~~~L--SgGekqRv~la~al~~~a~~li~d~~~l----lLDE~~---~~~l~~l~~ 252 (313)
.. +.-.....++ .+..+ |+|+++++.++. +..+..+++..+... .+|+.. ++.+..+..
T Consensus 74 ~~~ild~~~~~~~~~--------~~~~~~~s~g~~~~~~~i~-L~~~~e~l~~R~~~r~~d~~ld~~~~~~~~~~~~~~~ 144 (189)
T 2bdt_A 74 NDVVLDYIAFPDEAE--------ALAQTVQAKVDDVEIRFII-LWTNREELLRRDALRKKDEQMGERCLELVEEFESKGI 144 (189)
T ss_dssp CEEEEESCCCHHHHH--------HHHHHHHHHCSSEEEEEEE-EECCHHHHHHHTTTSCC----CGGGGHHHHHHHHTTC
T ss_pred CcEEEeeccCHHHHH--------HHHHHHHhcccCCCeEEEE-EeCCHHHHHHHHHhccccccCCHHHHHHHHHHhhcCC
Confidence 00 0000000000 11123 889999987744 111222232222222 344422 445555432
Q ss_pred ---CeEEEEcC-hHHHHH---HHH--hhhhccCChhHH
Q 021380 253 ---EKWFIEVD-LDTAMQ---RVL--KRHISTGKPPDV 281 (313)
Q Consensus 253 ---~~i~vtHd-~~~~~~---rvi--gr~v~~G~~~e~ 281 (313)
.+|.+||. ++.+.+ +++ |+++..|+++-+
T Consensus 145 ~~~~ii~tsh~~~~~~e~~~~~i~~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 145 DERYFYNTSHLQPTNLNDIVKNLKTNPRFIFCMAGDPL 182 (189)
T ss_dssp CTTSEEECSSSCGGGHHHHHHHHHHCGGGSCC------
T ss_pred CccEEEeCCCCChhhHHHHHHHHhhCCcEEEeecCCch
Confidence 23567887 665554 666 888888876554
No 124
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.24 E-value=8.3e-14 Score=129.24 Aligned_cols=132 Identities=14% Similarity=0.057 Sum_probs=84.5
Q ss_pred eEEEccceeEccccccccccccccceeecCC-------eEEEEECCCCCCHHHHHHHHHHHh----cccCCCCceeeeCC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVK-------HIVGLAGPPGAGKSTLAAEVVRRI----NKIWPQKASSFDSQ 145 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~G-------eiv~IiGpNGsGKSTLlk~L~Gll----~~~~p~~G~i~~~~ 145 (313)
+++.+++++.||... +++++++.+..| +.++|+||||+|||||+++|+|.+ . +++|.+..++
T Consensus 18 ~lr~~~l~~~~g~~~----~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~sg~~~~~~ 90 (334)
T 1in4_A 18 FLRPKSLDEFIGQEN----VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTSGPVLVKQ 90 (334)
T ss_dssp TTSCSSGGGCCSCHH----HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEETTTCCSH
T ss_pred HcCCccHHHccCcHH----HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEechHhcCH
Confidence 466788999998776 899999999876 899999999999999999999999 5 6778776543
Q ss_pred CC--------CCCeEEEEeccCCCCCcccCCcccCHHHHHHhcCCC----CCccHHHHHHHHHHhh-cCCCccCCCCCcc
Q 021380 146 VK--------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----WTFNPLLLLNCLKNLR-NQGSVYAPSFDHG 212 (313)
Q Consensus 146 ~~--------~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~----~~~~~~~~~~~l~~l~-~~~~~~~~~LSgG 212 (313)
.+ ....+.++++... +. -++.+++......++.. .......+...+..+. ......+..||+|
T Consensus 91 ~~l~~~~~~~~~~~v~~iDE~~~-l~---~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~ 166 (334)
T 1in4_A 91 GDMAAILTSLERGDVLFIDEIHR-LN---KAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSP 166 (334)
T ss_dssp HHHHHHHHHCCTTCEEEEETGGG-CC---HHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHccCCCEEEEcchhh-cC---HHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHH
Confidence 21 1235778887643 22 14555554333332211 0111122333334444 2234566799999
Q ss_pred CCCcchh
Q 021380 213 VGDPVED 219 (313)
Q Consensus 213 ekqRv~l 219 (313)
++||+.+
T Consensus 167 l~sR~~l 173 (334)
T 1in4_A 167 LRSRFGI 173 (334)
T ss_dssp HHTTCSE
T ss_pred HHHhcCc
Confidence 9999976
No 125
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.24 E-value=1.3e-12 Score=124.59 Aligned_cols=152 Identities=11% Similarity=0.045 Sum_probs=82.8
Q ss_pred eEEEccceeEccccccccccccccceeecCCeE--EEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeC--CCCCCCeE
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS--QVKPPDVA 152 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Gei--v~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~--~~~~~~~i 152 (313)
.|++++ ++.|++. .|+++||+|++|++ +||+||||||||||+++|+|+.- .|..... .....+.+
T Consensus 16 ~l~~~~-~~~y~~~-----~L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~~~~~~~~~~i 84 (427)
T 2qag_B 16 TVPLAG-HVGFDSL-----PDQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATHTQPGVQLQSN 84 (427)
T ss_dssp -CCCCC-CC-CC-------CHHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CCSSCEEEEE
T ss_pred eEEEee-EEEECCe-----ecCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCCCCccceEeeE
Confidence 467777 8999753 28999999999999 99999999999999999999841 1111100 00112358
Q ss_pred EEEeccCCCCCcccCCcccCHHHHHHhcC-CCCC----ccHHHHHHHHHHh-hcC------CCccCC-------CCCccC
Q 021380 153 TVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWT----FNPLLLLNCLKNL-RNQ------GSVYAP-------SFDHGV 213 (313)
Q Consensus 153 ~~v~q~~~~~~~~~ltv~e~l~~~~~~~~-~~~~----~~~~~~~~~l~~l-~~~------~~~~~~-------~LSgGe 213 (313)
+|++|+....+ .+|+.+++.++..... .... +....+..+|... +.. .+..+. ..+.|-
T Consensus 85 ~~v~Q~~~l~~--~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l 162 (427)
T 2qag_B 85 TYDLQESNVRL--KLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL 162 (427)
T ss_dssp EEEEEC--CEE--EEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---
T ss_pred EEEeecCcccc--ccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC
Confidence 89999854322 4789998765321000 0000 0012223333332 211 111110 011111
Q ss_pred CC-cchhhhhcccCccEEEEcCcccccCh
Q 021380 214 GD-PVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 214 kq-Rv~la~al~~~a~~li~d~~~llLDE 241 (313)
.. =+.++.++...+.+++++.+.-.|.+
T Consensus 163 ~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 163 KSLDLVTMKKLDSKVNIIPIIAKADAISK 191 (427)
T ss_dssp CHHHHHHHHHTCSCSEEEEEESCGGGSCH
T ss_pred CHHHHHHHHHHhhCCCEEEEEcchhccch
Confidence 11 15666777778889999998888876
No 126
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.23 E-value=6.8e-13 Score=112.43 Aligned_cols=130 Identities=18% Similarity=0.099 Sum_probs=73.2
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC------CCeEEEEeccCCCCCcccCCcccCHHHH
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP------PDVATVLPMDGFHLYLSQLDAMEDPKEA 176 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~------~~~i~~v~q~~~~~~~~~ltv~e~l~~~ 176 (313)
.+++|++++|+||||||||||+++|+|. ++.|.|.+++.+. ...++|++|+.. ..+++.+++.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-----~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~ 75 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-----PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADV 75 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-----SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-----cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHH
Confidence 4789999999999999999999999995 5678888876431 112334444321 124666666553
Q ss_pred HHhc---CCCCCccHHHHH-HHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhh
Q 021380 177 HARR---GAPWTFNPLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251 (313)
Q Consensus 177 ~~~~---~~~~~~~~~~~~-~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~ 251 (313)
.... +.....+. ... ..++.+.. .+..+..+|+|++|++.+++++..++ +++ +|+...+.+.+.+
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~ls~~~~~~v~~~R~~~r~~-------~~l-ld~~~~~~~~~~~ 144 (191)
T 1zp6_A 76 AGRYAKEGYFVILDG-VVRPDWLPAFTA-LARPLHYIVLRTTAAEAIERCLDRGG-------DSL-SDPLVVADLHSQF 144 (191)
T ss_dssp HHHHHHTSCEEEECS-CCCTTTTHHHHT-TCSCEEEEEEECCHHHHHHHHHTTCT-------TSC-CCHHHHHHHHHHT
T ss_pred HHHHhccCCeEEEec-cCcHHHHHHHHh-cCCCeEEEEecCCHHHHHHHHHhcCC-------Ccc-CCHHHHHHHHHHH
Confidence 3211 10000000 000 00011110 12334579999999999977765543 333 5775554444433
No 127
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.22 E-value=6e-12 Score=121.77 Aligned_cols=48 Identities=25% Similarity=0.175 Sum_probs=46.3
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
+|+++||+|++ +++||+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~ 66 (483)
T 3euj_A 19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTLLNFRNTT 66 (483)
T ss_dssp TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTTCCCCCTT
T ss_pred cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEE
Confidence 89999999999 9999999999999999999999999 999999999865
No 128
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.21 E-value=1.2e-11 Score=107.27 Aligned_cols=142 Identities=7% Similarity=-0.003 Sum_probs=78.2
Q ss_pred cccccce-eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHH
Q 021380 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 96 iL~~is~-~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~ 174 (313)
.|+++.+ .+++|++++|+||||||||||++.|++.+. +..|.+.+ +..+.. . +.+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~~v~~-----------~~~~~~--------~-~~~~ 67 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL---RDGDPCIY-----------VTTEES--------R-DSII 67 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH---HHTCCEEE-----------EESSSC--------H-HHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCCeEEE-----------EEcccC--------H-HHHH
Confidence 7888888 899999999999999999999999999887 66665543 222210 0 0000
Q ss_pred HHHHhcCCCCCc-cHHH---HHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCcc--EEEEcCccccc--Ch----h
Q 021380 175 EAHARRGAPWTF-NPLL---LLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFL--DG----G 242 (313)
Q Consensus 175 ~~~~~~~~~~~~-~~~~---~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~--~li~d~~~llL--DE----~ 242 (313)
......+..... .... +......++ ........|.++.++...+.+...+++ ++++|++..++ |+ .
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~ 145 (235)
T 2w0m_A 68 RQAKQFNWDFEEYIEKKLIIIDALMKEKE--DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARK 145 (235)
T ss_dssp HHHHHTTCCCGGGBTTTEEEEECCC------CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHH
T ss_pred HHHHHhcchHHHHhhCCEEEEeccccccC--ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHH
Confidence 000011111000 0000 000000000 001112347777666655555556788 99999999777 86 3
Q ss_pred hHHHHHHhhc----CeEEEEcChH
Q 021380 243 VWKDVSSMFD----EKWFIEVDLD 262 (313)
Q Consensus 243 ~~~~l~~l~~----~~i~vtHd~~ 262 (313)
+++.+.++.. .+++++|+..
T Consensus 146 ~~~~l~~~~~~~~~~vi~~~h~~~ 169 (235)
T 2w0m_A 146 ISYYLKRVLNKWNFTIYATSQYAI 169 (235)
T ss_dssp HHHHHHHHHHHTTEEEEEEEC---
T ss_pred HHHHHHHHHHhCCCeEEEEeccCc
Confidence 4445544432 2469999983
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.21 E-value=4.3e-12 Score=122.66 Aligned_cols=77 Identities=17% Similarity=0.143 Sum_probs=62.4
Q ss_pred ccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC--------------CeEEEEeccCCCC
Q 021380 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------------DVATVLPMDGFHL 162 (313)
Q Consensus 97 L~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~--------------~~i~~v~q~~~~~ 162 (313)
-+++||++.+|++++|+|+||||||||+++|+|+++ +++|+|.+.+.+.. ..++|++|+....
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE---QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh---hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 468999999999999999999999999999999999 99999998765432 2378899875322
Q ss_pred CcccCCcccCHHHHHH
Q 021380 163 YLSQLDAMEDPKEAHA 178 (313)
Q Consensus 163 ~~~~ltv~e~l~~~~~ 178 (313)
+.+++.+++.+...
T Consensus 360 --p~~tV~e~l~~a~~ 373 (503)
T 2yhs_A 360 --SASVIFDAIQAAKA 373 (503)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHh
Confidence 24688888877643
No 130
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.17 E-value=2.9e-11 Score=113.86 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=38.8
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCC-CceeeeCC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQ 145 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~-~G~i~~~~ 145 (313)
+|++++ +.+|++++|+||||||||||+++|+|+++ |+ +|.|.+.+
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~---~~~~g~I~~~e 172 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIE 172 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH---HHSCCEEEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC---cCCCcEEEEec
Confidence 566655 78999999999999999999999999998 87 89886543
No 131
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.15 E-value=7.4e-13 Score=123.70 Aligned_cols=118 Identities=16% Similarity=0.164 Sum_probs=77.1
Q ss_pred ccccc-ceeecCCeEEEEECCCCCCHHHHHHHHHHHh--cccCCCC----ce-eeeCCCCC--CCeEEEEeccCCCCCcc
Q 021380 96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQK----AS-SFDSQVKP--PDVATVLPMDGFHLYLS 165 (313)
Q Consensus 96 iL~~i-s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll--~~~~p~~----G~-i~~~~~~~--~~~i~~v~q~~~~~~~~ 165 (313)
.|+.+ ++.|++|++++|+||||||||||++.|++.. + |++ |. |++++... .+++++++|... ++.
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~---~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~-~~~- 193 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTENTFRPERIREIAQNRG-LDP- 193 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTSCSCEEEEEESSSCCCHHHHHHHHHTTT-CCH-
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc---hhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcC-CCH-
Confidence 56665 6899999999999999999999999999998 5 665 57 77777553 234555666532 221
Q ss_pred cCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccCh
Q 021380 166 QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG 241 (313)
Q Consensus 166 ~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE 241 (313)
.++.+|+.+.. . .......++++.+. ..+.+||+|| .+++++++|++..++|.
T Consensus 194 -~~v~~ni~~~~-----~--~~~~~~~~~l~~~~----~~~~~lS~G~-----------~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 194 -DEVLKHIYVAR-----A--FNSNHQMLLVQQAE----DKIKELLNTD-----------RPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp -HHHGGGEEEEE-----C--CSHHHHHHHHHHHH----HHHHHSSSSS-----------SCEEEEEEETSSTTHHH
T ss_pred -HHHhhCEEEEe-----c--CChHHHHHHHHHHH----HHHHHhcccc-----------CCCCEEEEeCchHhhhh
Confidence 25556554321 0 11111222232221 1234688888 34899999999999986
No 132
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.13 E-value=6.8e-11 Score=101.62 Aligned_cols=136 Identities=15% Similarity=0.284 Sum_probs=77.8
Q ss_pred ceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHHhc
Q 021380 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180 (313)
Q Consensus 101 s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~ 180 (313)
--++.+|.+++|+|++|||||||++.|++.++ .+.++++|+++.....++.... ....+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~------------------~~~~i~~D~~~~~~~~~~~~~~---~~~~~ 73 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP------------------NCSVISQDDFFKPESEIETDKN---GFLQY 73 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST------------------TEEEEEGGGGBCCGGGSCBCTT---SCBCC
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC------------------CcEEEeCCccccCHhHhhcccc---CCChh
Confidence 34678999999999999999999999999772 1688999976543221111000 00000
Q ss_pred CCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcC
Q 021380 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVD 260 (313)
Q Consensus 181 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd 260 (313)
......+...+.+.+..+.... ..+.++.|+++ ..+..+++.|+.++.-++. +.+..+.++++.-+
T Consensus 74 ~~~~~~~~~~l~~~i~~~l~~~--~~~~~~~~~~~--------~~~~~~vi~eg~~~~~~~~----~~~~~d~~i~l~~~ 139 (207)
T 2qt1_A 74 DVLEALNMEKMMSAISCWMESA--RHSVVSTDQES--------AEEIPILIIEGFLLFNYKP----LDTIWNRSYFLTIP 139 (207)
T ss_dssp SSGGGBCHHHHHHHHHHHHHHH--TTSSCCC-------------CCCCEEEEECTTCTTCGG----GTTTCSEEEEEECC
T ss_pred HHHHHhHHHHHHHHHHHHHhCC--CCCCcCCCeee--------cCCCCEEEEeehHHcCcHH----HHHhcCeeEEEECC
Confidence 1111223333333332221110 12255666654 2236788999977665543 33556777899999
Q ss_pred hHHHHHHHHhh
Q 021380 261 LDTAMQRVLKR 271 (313)
Q Consensus 261 ~~~~~~rvigr 271 (313)
.+....|+..|
T Consensus 140 ~~~~~~R~~~R 150 (207)
T 2qt1_A 140 YEECKRRRSTR 150 (207)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHc
Confidence 98887777644
No 133
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.12 E-value=3.2e-12 Score=115.43 Aligned_cols=113 Identities=15% Similarity=-0.005 Sum_probs=68.0
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC--------CeEEEEeccCCCCCcccC
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--------DVATVLPMDGFHLYLSQL 167 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~--------~~i~~v~q~~~~~~~~~l 167 (313)
++++++|.+++| ++|+||||||||||+++|+|.+. + |.+.+++.+.. +.+++++|...... +.+
T Consensus 35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~---~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~-p~i 106 (274)
T 2x8a_A 35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG---L--NFISVKGPELLNMYVGESERAVRQVFQRAKNSA-PCV 106 (274)
T ss_dssp HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT---C--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTC-SEE
T ss_pred HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC---C--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcC-CCe
Confidence 899999999999 99999999999999999999986 5 67877775431 12445555421111 124
Q ss_pred CcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccC
Q 021380 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226 (313)
Q Consensus 168 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~ 226 (313)
++.+++......++.. .. .......+..+.+|||||+||+.+++++...
T Consensus 107 ~~~Deid~~~~~r~~~------~~----~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~ 155 (274)
T 2x8a_A 107 IFFDEVDALCPRRSDR------ET----GASVRVVNQLLTEMDGLEARQQVFIMAATNR 155 (274)
T ss_dssp EEEETCTTTCC-------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESC
T ss_pred EeeehhhhhhcccCCC------cc----hHHHHHHHHHHHhhhcccccCCEEEEeecCC
Confidence 5556554321111000 00 0000001123447899999999994443333
No 134
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.12 E-value=3.6e-14 Score=130.98 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=33.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh--------cccCCCCceeeeCCCC
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI--------NKIWPQKASSFDSQVK 147 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll--------~~~~p~~G~i~~~~~~ 147 (313)
++++|+|+||||||||+|.|.|+. . |+.|+|.++|..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~---~d~G~i~idg~~ 49 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE---NEFGEVSVDDQL 49 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC---SSCCSCCEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE---ecCcccCccHHH
Confidence 689999999999999999999986 5 899999887743
No 135
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.11 E-value=8.9e-13 Score=118.92 Aligned_cols=136 Identities=17% Similarity=0.066 Sum_probs=82.9
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------C
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------~ 149 (313)
.+++++.+.|+... ++++++|.+++| ++|+||||+|||||+++|++.+. .|.+.+++.+. .
T Consensus 50 ~~l~~l~~~~~~~~----~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~ 118 (278)
T 1iy2_A 50 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGA 118 (278)
T ss_dssp HHHHHHHHHHHCHH----HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHH
T ss_pred HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHH
Confidence 34677888887666 899999999999 99999999999999999999874 56776654221 1
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccE
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV 229 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~ 229 (313)
..+.+++|..... .+.+++.|++...................+.+..+ ...|||||+||+.+ +.+
T Consensus 119 ~~i~~~~~~~~~~-~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l-------l~~lsgg~~~~~~i-------~~a 183 (278)
T 1iy2_A 119 ARVRDLFETAKRH-APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL-------LVEMDGFEKDTAIV-------VMA 183 (278)
T ss_dssp HHHHHHHHHHHTS-CSEEEEEETHHHHHCC--------CHHHHHHHHHH-------HHHHTTCCTTCCEE-------EEE
T ss_pred HHHHHHHHHHHhc-CCcEEehhhhHhhhcccccccCCcchHHHHHHHHH-------HHHHhCCCCCCCEE-------EEE
Confidence 1234455553211 12367778875432211100000011111222221 12578999999999 666
Q ss_pred EEEcCcccccCh
Q 021380 230 VIVDGNYLFLDG 241 (313)
Q Consensus 230 li~d~~~llLDE 241 (313)
+..+|.+ +|+
T Consensus 184 ~t~~p~~--ld~ 193 (278)
T 1iy2_A 184 ATNRPDI--LDP 193 (278)
T ss_dssp EESCTTS--SCH
T ss_pred ecCCchh--CCH
Confidence 6666654 675
No 136
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.11 E-value=2.8e-13 Score=120.03 Aligned_cols=130 Identities=13% Similarity=0.040 Sum_probs=77.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHH---HHhcccCCCCceeeeCCCCCCC----eEEEEeccCCCCCcccCCcccCHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKASSFDSQVKPPD----VATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~---Gll~~~~p~~G~i~~~~~~~~~----~i~~v~q~~~~~~~~~ltv~e~l~~~~~ 178 (313)
++++++|+||||||||||+++|+ |+.. ++.|++.+++..... .+.+++|++...+ ..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~---~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~v~~~l~~~l~ 100 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH---LSSGHFLRENIKASTEVGEMAKQYIEKSLLVP--DHVITRLMMSELE 100 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC---EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE---ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCC--HHHHHHHHHHHHH
Confidence 47999999999999999999999 8877 899998776532111 1223344433222 3566676665332
Q ss_pred --------hcCCCCCccHHHHHHHHH--Hhh--------------cCCCccCCCCCccCCCcchhhhhc-ccCccEEEEc
Q 021380 179 --------RRGAPWTFNPLLLLNCLK--NLR--------------NQGSVYAPSFDHGVGDPVEDDILV-GLQHKVVIVD 233 (313)
Q Consensus 179 --------~~~~~~~~~~~~~~~~l~--~l~--------------~~~~~~~~~LSgGekqRv~la~al-~~~a~~li~d 233 (313)
..+.+... ..+..+.. .++ ...++.+..||| |+ +++ +.+++++++|
T Consensus 101 ~~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 101 NRRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp TCTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBC
T ss_pred hcCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccc
Confidence 12223221 22222211 111 112445668998 65 444 7778888888
Q ss_pred ----CcccccChhhHHHHHH
Q 021380 234 ----GNYLFLDGGVWKDVSS 249 (313)
Q Consensus 234 ----~~~llLDE~~~~~l~~ 249 (313)
+|+..+|+...+.+.+
T Consensus 172 ~~~~EP~~~ld~~~~~~i~~ 191 (246)
T 2bbw_A 172 DVTGEPLVQQEDDKPEAVAA 191 (246)
T ss_dssp TTTCCBCBCCGGGSHHHHHH
T ss_pred cccccccccCCCCcHHHHHH
Confidence 8998888844443333
No 137
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.10 E-value=3.2e-11 Score=107.39 Aligned_cols=174 Identities=17% Similarity=0.185 Sum_probs=88.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHH---HHhcccCCCCceee--------eCCCCCC---------CeEEEEeccCCC---
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKASSF--------DSQVKPP---------DVATVLPMDGFH--- 161 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~---Gll~~~~p~~G~i~--------~~~~~~~---------~~i~~v~q~~~~--- 161 (313)
.+|++++|+|||||||||++++|+ |+.. +++|.+. .+|.+.. ..+++++|....
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~---~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL---LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQ 101 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE---EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc---CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCce
Confidence 789999999999999999999999 7776 9999998 6665431 235666654211
Q ss_pred CCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCc---ccc
Q 021380 162 LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN---YLF 238 (313)
Q Consensus 162 ~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~---~ll 238 (313)
......++.+++.................+.+.+..+.. .++. ... ++.++. +++
T Consensus 102 ~~l~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~-------~~a~--------------~~~-~V~~gr~~~~~v 159 (252)
T 4e22_A 102 VILEGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQR-------AFRE--------------APG-LIADGRDMGTIV 159 (252)
T ss_dssp EEETTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHH-------TTCC--------------SSC-EEEEESSCCCCC
T ss_pred EEECCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHH-------HHhh--------------CCC-EEEEeceeceee
Confidence 001123444554321110000000011222333322211 1111 122 333432 223
Q ss_pred cChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhccC--ChhHHHHHHHHhcCCchHH-HHHhhcCCCC-EEeccCC
Q 021380 239 LDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTG--KPPDVAKWRIEYNDRPNAE-LIMKSKKNAD-LVIKSID 312 (313)
Q Consensus 239 LDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~~G--~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD-~i~~~~~ 312 (313)
+++ .+..||++-+.++..+|+..+....| ...+.+...+...+..... ++.|.+..+| ++|++++
T Consensus 160 ~~~---------~~~~ifl~A~~e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~ 228 (252)
T 4e22_A 160 FPD---------APVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTS 228 (252)
T ss_dssp STT---------CSEEEEEECCHHHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSS
T ss_pred cCC---------CCEEEEEECCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcC
Confidence 331 34468999999998887764444333 2333333334444444443 7788888888 8888764
No 138
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.06 E-value=4e-11 Score=109.61 Aligned_cols=92 Identities=12% Similarity=0.049 Sum_probs=58.7
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee---CCCCCC--------CeEEEEeccCCCC--------
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---SQVKPP--------DVATVLPMDGFHL-------- 162 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~---~~~~~~--------~~i~~v~q~~~~~-------- 162 (313)
|++..|++++|+||||||||||+|+|+|++. |++|+|.+ +|.... +.+++++|.+...
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~ 240 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIE 240 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc---ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCC
Confidence 4567899999999999999999999999999 99999998 665421 2378899886321
Q ss_pred ------CcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc
Q 021380 163 ------YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN 200 (313)
Q Consensus 163 ------~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~ 200 (313)
..+++++ +|+.+.... .......++.++|+.++.
T Consensus 241 ~~~~~~l~~~~~~-~n~~~~~~~---~~~e~~~~v~~~l~~~~L 280 (301)
T 1u0l_A 241 PEELKHYFKEFGD-KQCFFSDCN---HVDEPECGVKEAVENGEI 280 (301)
T ss_dssp HHHHGGGSTTSSS-CCCSSTTCC---SSSCSSCHHHHHHHHTSS
T ss_pred HHHHHHHHHhccc-ccCcCCCCc---CCCCCCcHHHHHHHcCCC
Confidence 1235788 888764211 122334567788888875
No 139
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.06 E-value=1.5e-12 Score=115.74 Aligned_cols=132 Identities=17% Similarity=0.083 Sum_probs=80.7
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCC--------C
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP--------P 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~--------~ 149 (313)
.+++++.+.|++.. +++++++++++| ++|+||||+|||||+++|++.+. .|.+.+++.+. .
T Consensus 26 ~~l~~l~~~~~~~~----~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~ 94 (254)
T 1ixz_A 26 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGA 94 (254)
T ss_dssp HHHHHHHHHHHCHH----HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSCTTHHH
T ss_pred HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHHHHHHhhHHH
Confidence 44677888887665 899999999999 99999999999999999999874 56676654221 0
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCC----CCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhccc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
+.+.+++|..... .+.+.+.|++.......+. ........+..++ ..|||||+||+.+
T Consensus 95 ~~i~~~~~~~~~~-~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll-----------~~l~g~~~~~~~i------ 156 (254)
T 1ixz_A 95 ARVRDLFETAKRH-APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-----------VEMDGFEKDTAIV------ 156 (254)
T ss_dssp HHHHHHHHHHTTS-SSEEEEEETHHHHHC---------CHHHHHHHHHHH-----------HHHHTCCTTCCEE------
T ss_pred HHHHHHHHHHHhc-CCeEEEehhhhhhhcccCccccccchHHHHHHHHHH-----------HHHhCCCCCCCEE------
Confidence 1234455542211 1236677887543221111 0111111222222 2468999999998
Q ss_pred CccEEEEcCcccccCh
Q 021380 226 QHKVVIVDGNYLFLDG 241 (313)
Q Consensus 226 ~a~~li~d~~~llLDE 241 (313)
+.++..+|.. +|+
T Consensus 157 -~~a~t~~p~~--ld~ 169 (254)
T 1ixz_A 157 -VMAATNRPDI--LDP 169 (254)
T ss_dssp -EEEEESCGGG--SCG
T ss_pred -EEEccCCchh--CCH
Confidence 4555554433 554
No 140
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.05 E-value=3.6e-10 Score=100.37 Aligned_cols=185 Identities=24% Similarity=0.372 Sum_probs=106.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHH---hcCC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA---RRGA 182 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~---~~~~ 182 (313)
+.-+|+|.|+.||||||+.+.|+..+.. + .++ .....+.+++.|.++.. +. ...+..... .++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~--~-----~~d--~~~~~~~~i~~D~~~~~---~~-~~~~~~~~~g~~~f~~ 87 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ--N-----EVD--YRQKQVVILSQDSFYRV---LT-SEQKAKALKGQFNFDH 87 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG--G-----GSC--GGGCSEEEEEGGGGBCC---CC-HHHHHHHHTTCSCTTS
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh--h-----ccc--ccCCceEEEecCccccc---cC-hhhhhhhccCCCCCCC
Confidence 3458999999999999999999987641 1 000 01123556888865421 11 111111100 1122
Q ss_pred CCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChH
Q 021380 183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLD 262 (313)
Q Consensus 183 ~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~ 262 (313)
+..++...+.+.|+.+........+.++.....++.-.. ......+++.|+.+++.++ .+.+.++.+|+++-+.+
T Consensus 88 ~~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~-~~~~~~~vIveG~~~~~~~----~~~~~~d~vi~l~~~~e 162 (252)
T 1uj2_A 88 PDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETV-TVYPADVVLFEGILAFYSQ----EVRDLFQMKLFVDTDAD 162 (252)
T ss_dssp GGGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEE-EECCCSEEEEECTTTTSSH----HHHHHCSEEEEEECCHH
T ss_pred cchhhHHHHHHHHHHHHcCCeeecCccccccccCCCcee-eeCCCcEEEEeeeccccCH----HHHHhcCeeEEEeCCHH
Confidence 344555666666766653322222222221111221000 0123578999998776664 35566777899999999
Q ss_pred HHHHHHHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCEEe
Q 021380 263 TAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADLVI 308 (313)
Q Consensus 263 ~~~~rvigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~i~ 308 (313)
...+|+..|.. ..|...+.+..++...+.+.++ ++.|.+..||+++
T Consensus 163 ~~~~R~~~R~~~~rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI 210 (252)
T 1uj2_A 163 TRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCLPTKKYADVII 210 (252)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEE
T ss_pred HHHHHHHHHHHhhhCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEE
Confidence 98888876643 4465555555556655555444 7888888999998
No 141
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=99.03 E-value=1.5e-11 Score=107.91 Aligned_cols=56 Identities=20% Similarity=0.221 Sum_probs=42.4
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
.|+++|+...|+. +|++.+ ++++|+||||||||||+++|+|++. |++|.|.++|.+
T Consensus 9 ~l~l~~~~~~~~~-----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~i~~~g~~ 64 (227)
T 1qhl_A 9 SLTLINWNGFFAR-----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI---PDLTLLHFRNTT 64 (227)
T ss_dssp EEEEEEETTEEEE-----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTTC------
T ss_pred EEEEEeeecccCC-----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc---cCCCeEEECCEE
Confidence 5888898776642 344455 8999999999999999999999999 999999988754
No 142
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.03 E-value=1.4e-09 Score=92.89 Aligned_cols=37 Identities=35% Similarity=0.382 Sum_probs=26.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++||||++.+|.+++|+|++||||||+.+.|++.+.
T Consensus 14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ----------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 8999999999999999999999999999999999885
No 143
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.00 E-value=5.1e-11 Score=106.16 Aligned_cols=53 Identities=19% Similarity=0.289 Sum_probs=37.2
Q ss_pred CeEEEccc-eeEc-cccccccccccccceeecC---CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 76 PVVEARCM-DEVY-DALAQRLLPTSALASNVNV---KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 76 ~~l~v~~l-s~~y-~~~~~~~~iL~~is~~i~~---Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++|+++|+ ++.| ++.. +|+++||+|.+ |++++|+|++||||||++++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~~----~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQ----ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------CH----HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcch----hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 47999999 9999 6655 99999999999 99999999999999999999999885
No 144
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.00 E-value=1.3e-11 Score=113.08 Aligned_cols=110 Identities=12% Similarity=0.076 Sum_probs=59.3
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee---CCCCCC------Ce-EEEEeccCCCCCcc--cCCc
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---SQVKPP------DV-ATVLPMDGFHLYLS--QLDA 169 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~---~~~~~~------~~-i~~v~q~~~~~~~~--~ltv 169 (313)
+++.+|++++|+||||+|||||+|+|+|++. |.+|+|.+ .|.... +. +++++|.+...... .+++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~---~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG---LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc---ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 7788999999999999999999999999998 99999987 554321 11 68898886432211 3566
Q ss_pred ccCHH--HHH-H-h------cCC-CCCccHHHHHHHHHHhhcCC--CccCCCCCccCCC
Q 021380 170 MEDPK--EAH-A-R------RGA-PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD 215 (313)
Q Consensus 170 ~e~l~--~~~-~-~------~~~-~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgGekq 215 (313)
+++. |.. . . .+. ........+.++++.++... ...+..|+.|++|
T Consensus 245 -e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~ 302 (307)
T 1t9h_A 245 -EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKD 302 (307)
T ss_dssp -HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhh
Confidence 7763 221 1 1 121 12223345677788777532 2344456666555
No 145
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.00 E-value=1e-09 Score=99.84 Aligned_cols=189 Identities=14% Similarity=0.099 Sum_probs=102.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCC-cccCCcccCHHHHHH----hc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY-LSQLDAMEDPKEAHA----RR 180 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~-~~~ltv~e~l~~~~~----~~ 180 (313)
++-++||.|++||||||+.+.|...+. . . ...+.++..|.++.. ...++. .+..... .+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg---~-~----------~~~~~vI~~D~~~r~~~~~~~~--~~~~~~~~g~~~~ 67 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR---R-E----------GVKAVSIEGDAFHRFNRADMKA--ELDRRYAAGDATF 67 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH---H-H----------TCCEEEEEGGGGBSCCHHHHHH--HHHHHHHHTCTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh---h-c----------CCCeeEeecchhhcCCHHHhhh--hhhhhhhccCcCc
Confidence 456899999999999999999998763 1 0 112577888876532 111000 0000001 11
Q ss_pred CC--CCCccHHHHHHHHHHhhcCCCccCCCCCc---------cCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHH
Q 021380 181 GA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDH---------GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS 249 (313)
Q Consensus 181 ~~--~~~~~~~~~~~~l~~l~~~~~~~~~~LSg---------GekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~ 249 (313)
.. +...+...+.+.+..+........+.|.. .....+.-...+.....+++.|+.++++.. ....+.+
T Consensus 68 ~~fg~~~~d~~~l~~~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~-~~~~v~~ 146 (290)
T 1a7j_A 68 SHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVN-SEVNIAG 146 (290)
T ss_dssp STTSGGGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBC-SSCBCGG
T ss_pred CCCChhhhcHHHHHHHHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEeccccccc-chHhHHH
Confidence 22 33344455555555554222222222211 011111000112224678999998887320 0012445
Q ss_pred hhcCeEEEEcChHHHHHHHHhhhh-ccCChhHHHHHHHHhcCCchHH-HHHhhcCCCCE------EeccCC
Q 021380 250 MFDEKWFIEVDLDTAMQRVLKRHI-STGKPPDVAKWRIEYNDRPNAE-LIMKSKKNADL------VIKSID 312 (313)
Q Consensus 250 l~~~~i~vtHd~~~~~~rvigr~v-~~G~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD~------i~~~~~ 312 (313)
.++..|||+-+.++...|++.|.+ .+|...+.+...+... .+.++ ||.|.+..||+ +|+++.
T Consensus 147 ~~D~~IfV~a~~~~rl~Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns~ 216 (290)
T 1a7j_A 147 LADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTSN 216 (290)
T ss_dssp GCSEEEEEEECHHHHHHHHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCSC
T ss_pred hCCEEEEEECCHHHHHHHHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCCC
Confidence 677789999999998888887664 4575544444444444 55555 99999999999 777653
No 146
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.98 E-value=3.9e-10 Score=94.69 Aligned_cols=116 Identities=8% Similarity=-0.034 Sum_probs=67.5
Q ss_pred cccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee---------CCC-----CCCCeEEEEeccCCCCC
Q 021380 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD---------SQV-----KPPDVATVLPMDGFHLY 163 (313)
Q Consensus 98 ~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~---------~~~-----~~~~~i~~v~q~~~~~~ 163 (313)
++++|++.+| +.+|+||||||||||+++|.+++. +..|.... .+. .....+.++++++....
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~ 93 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG---GLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGF 93 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT---CCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc---CCcccccccccchheeecccccCCCCceEEEEEEEeCCCccc
Confidence 6788999999 999999999999999999999997 76664322 111 12235777888753221
Q ss_pred cc---cCCcccCHHHH-HHhcCC-CCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcch
Q 021380 164 LS---QLDAMEDPKEA-HARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE 218 (313)
Q Consensus 164 ~~---~ltv~e~l~~~-~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~ 218 (313)
+. .+++...+... ...+.. ........+.+++..++...+. +.-++.|+.+++.
T Consensus 94 ~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~-~~~~~qg~~~~l~ 152 (182)
T 3kta_A 94 PIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDG-YNIVLQGDITKFI 152 (182)
T ss_dssp SSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTC-TTEECTTCTTHHH
T ss_pred ccCCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCC-CEEEEcccHHHHH
Confidence 11 12332221100 000000 1112345677777777644332 2346777776654
No 147
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.97 E-value=1.6e-10 Score=101.09 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=22.9
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHH-HHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~-Gll~ 132 (313)
..+++||++++|+++||+||||||||||+++|+ |+++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 578999999999999999999999999999999 9984
No 148
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.94 E-value=1.2e-09 Score=93.99 Aligned_cols=130 Identities=15% Similarity=0.059 Sum_probs=77.1
Q ss_pred cccccce-eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHH
Q 021380 96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174 (313)
Q Consensus 96 iL~~is~-~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~ 174 (313)
.|+++.. .+++|++++|+||||||||||++.|++ . +.. .+.|+..+.. .+. +.+.
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~---~~~------------~v~~i~~~~~------~~~-~~~~ 63 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L---SGK------------KVAYVDTEGG------FSP-ERLV 63 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H---HCS------------EEEEEESSCC------CCH-HHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H---cCC------------cEEEEECCCC------CCH-HHHH
Confidence 5777765 799999999999999999999999999 3 221 2445554421 111 1111
Q ss_pred HHHHhcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCC--CcchhhhhcccC-ccEEEEcCcccccCh----------
Q 021380 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG--DPVEDDILVGLQ-HKVVIVDGNYLFLDG---------- 241 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGek--qRv~la~al~~~-a~~li~d~~~llLDE---------- 241 (313)
......+. +.+ ++++.+ .+..++++++ +++..+++++.. ++++++|++..++|.
T Consensus 64 ~~~~~~~~----~~~---~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~ 130 (220)
T 2cvh_A 64 QMAETRGL----NPE---EALSRF------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAE 130 (220)
T ss_dssp HHHHTTTC----CHH---HHHHHE------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHH
T ss_pred HHHHhcCC----ChH---HHhhcE------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHH
Confidence 11111111 111 222222 2335566654 456666677764 999999999999884
Q ss_pred --hhHHHHHHhhc----CeEEEEcChH
Q 021380 242 --GVWKDVSSMFD----EKWFIEVDLD 262 (313)
Q Consensus 242 --~~~~~l~~l~~----~~i~vtHd~~ 262 (313)
.++..|.++.+ .+++++|...
T Consensus 131 ~~~~~~~L~~l~~~~~~~vi~~~h~~~ 157 (220)
T 2cvh_A 131 LSRQLQVLLWIARKHNIPVIVINQVHF 157 (220)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeeEEE
Confidence 12223444433 2468888765
No 149
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.90 E-value=4.2e-10 Score=116.43 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=71.9
Q ss_pred HHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccCcc--EEEEcCcccccCh----hhHHHHHHhhc---CeEEEE
Q 021380 191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIE 258 (313)
Q Consensus 191 ~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a~--~li~d~~~llLDE----~~~~~l~~l~~---~~i~vt 258 (313)
..+.|..++.. .++++.+|||||+|||+||++++..+. ++++|+|+..||+ .+++.|.++.+ .+|+||
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34556666642 467888999999999999999998666 9999999999999 44555555544 257999
Q ss_pred cChHHHHH--HHH----------hhhhccCChhHHHH
Q 021380 259 VDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 259 Hd~~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
||++++.. |++ |++++.|+++++..
T Consensus 524 Hd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 524 HDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 99998765 443 57888999988754
No 150
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.89 E-value=2e-10 Score=118.50 Aligned_cols=116 Identities=17% Similarity=0.129 Sum_probs=82.9
Q ss_pred cCCcccCHHHHHHhcCCCCC----------ccHHHHHHHHHHhhcC---CCccCCCCCccCCCcchhhhhcccC--ccEE
Q 021380 166 QLDAMEDPKEAHARRGAPWT----------FNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVV 230 (313)
Q Consensus 166 ~ltv~e~l~~~~~~~~~~~~----------~~~~~~~~~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~--a~~l 230 (313)
.+||.+++.|.. ..+.+.. ....++ +.|..+|.. .++.+.+|||||+||+.||.++..+ +.++
T Consensus 451 ~ltV~e~~~f~e-~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll 528 (972)
T 2r6f_A 451 AMSVTEALAFFD-GLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY 528 (972)
T ss_dssp TSBHHHHHHHHH-HCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE
T ss_pred hCCHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE
Confidence 368888888853 3333321 111222 346777743 5778889999999999999999987 4899
Q ss_pred EEcCcccccCh----hhHHHHHHhhc---CeEEEEcChHHHHH--HHH----------hhhhccCChhHHHH
Q 021380 231 IVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDLDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 231 i~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
++|+|+..||+ .+++.|+++.+ .+|+|+||++++.. |++ |++++.|++.++..
T Consensus 529 ILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~ 600 (972)
T 2r6f_A 529 VLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 600 (972)
T ss_dssp EEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTT
T ss_pred EEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHh
Confidence 99999999998 45555555544 36799999998654 443 57888888877643
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.85 E-value=2.3e-09 Score=98.22 Aligned_cols=99 Identities=15% Similarity=0.105 Sum_probs=68.5
Q ss_pred ccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHHHHHH
Q 021380 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178 (313)
Q Consensus 99 ~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~~~~~ 178 (313)
.++|...+|++++|+|+|||||||+++.|++.+. +..|+|. ++..|.+ .. .
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~kV~-----------lv~~D~~---r~--~---------- 146 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGKSVV-----------LAAADTF---RA--A---------- 146 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEE-----------EEEECTT---CH--H----------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCCEEE-----------EEccccc---cH--H----------
Confidence 4567788999999999999999999999999998 7666554 3444422 10 0
Q ss_pred hcCCCCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcc---hhhhhcccCccEEEEcCccc
Q 021380 179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV---EDDILVGLQHKVVIVDGNYL 237 (313)
Q Consensus 179 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv---~la~al~~~a~~li~d~~~l 237 (313)
..+.+..+++.++.. .++.+|+|+.+++ +++.++...+++++.|.+-.
T Consensus 147 --------a~eqL~~~~~~~gl~---~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 147 --------AIEQLKIWGERVGAT---VISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp --------HHHHHHHHHHHHTCE---EECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred --------HHHHHHHHHHHcCCc---EEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 011223334444321 2456789999998 77777888888888887654
No 152
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.84 E-value=3.4e-10 Score=117.24 Aligned_cols=91 Identities=15% Similarity=0.175 Sum_probs=70.6
Q ss_pred HHHHHhhc---CCCccCCCCCccCCCcchhhhhcccC--ccEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcC
Q 021380 193 NCLKNLRN---QGSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVD 260 (313)
Q Consensus 193 ~~l~~l~~---~~~~~~~~LSgGekqRv~la~al~~~--a~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd 260 (313)
+.|..++. ..++.+.+|||||+||+.||.+++.+ +.++++|+|+..||+ .+++.|.++.+ .+|+|+||
T Consensus 503 ~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 582 (993)
T 2ygr_A 503 GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHD 582 (993)
T ss_dssp HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 34666663 25778889999999999999999987 589999999999998 44444444443 36899999
Q ss_pred hHHHHH--HHH----------hhhhccCChhHHHH
Q 021380 261 LDTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 261 ~~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
++++.. |++ |++++.|++.++..
T Consensus 583 l~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~ 617 (993)
T 2ygr_A 583 EDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLR 617 (993)
T ss_dssp HHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHH
T ss_pred HHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhh
Confidence 998654 443 57888899888765
No 153
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.81 E-value=3.6e-09 Score=88.73 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=31.9
Q ss_pred ceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 021380 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (313)
Q Consensus 101 s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (313)
+|.+.+|+.++|+||||+|||||++.|++.+. |..|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~---~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY---EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH---HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH---HHcC
Confidence 56778899999999999999999999999996 5555
No 154
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.80 E-value=8.6e-10 Score=94.36 Aligned_cols=48 Identities=17% Similarity=0.117 Sum_probs=37.8
Q ss_pred ccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|++..++... +.+..++..++|++++|+||||||||||++.|++.+.
T Consensus 3 ~~~~~~~~~~~----~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 3 TNIKWHECSVE----KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp -------CCCC----HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCcccccccC----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46777777666 7888999999999999999999999999999999994
No 155
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.79 E-value=9.5e-09 Score=95.07 Aligned_cols=125 Identities=14% Similarity=0.111 Sum_probs=63.1
Q ss_pred EEEEECCCCCCHHHHHHHHHH-HhcccCCCCceeeeCCCCCC------CeEEEEeccCCCCCcccCCcccCHHHHHHhcC
Q 021380 109 IVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDSQVKPP------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRG 181 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~G-ll~~~~p~~G~i~~~~~~~~------~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~ 181 (313)
.+.|.||||+|||||++.|++ ++. |+.|.+.++|.... ..++++++..+.. +...+ .+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~---~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------~~ 102 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG---PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLE----ITPSD--------MG 102 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC---TTCCC------------------CCEECSSEEE----ECCC-----------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC---CCCCeEEecceeecccccccceeeeecccceEE----ecHhh--------cC
Confidence 389999999999999999999 667 89999988765421 2345555543211 11100 00
Q ss_pred CCCCccHHHHHHHHHHhhcCC--CccCCCCCccCCCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc----C--
Q 021380 182 APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD----E-- 253 (313)
Q Consensus 182 ~~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~----~-- 253 (313)
. .....+.+.++.+.... .... .||| +..+++++++|++.. ||+...+.+.+.+. .
T Consensus 103 ~---~~~~~~~~~i~~~~~~~~~~~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 103 N---NDRIVIQELLKEVAQMEQVDFQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp ----CCHHHHHHHHHHHTTTTC------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEE
T ss_pred C---cchHHHHHHHHHHHHhccccccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCE
Confidence 0 11112344444443111 1111 4455 344588999999888 88855555555443 2
Q ss_pred eEEEEcChHHH
Q 021380 254 KWFIEVDLDTA 264 (313)
Q Consensus 254 ~i~vtHd~~~~ 264 (313)
.|++||+.+.+
T Consensus 167 ~Il~t~~~~~l 177 (354)
T 1sxj_E 167 LIMVCDSMSPI 177 (354)
T ss_dssp EEEEESCSCSS
T ss_pred EEEEeCCHHHH
Confidence 46999997643
No 156
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.78 E-value=3.2e-10 Score=108.04 Aligned_cols=117 Identities=18% Similarity=0.133 Sum_probs=70.2
Q ss_pred ccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC---CCCeEEEEeccCCCCCcccCCcccCH
Q 021380 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PPDVATVLPMDGFHLYLSQLDAMEDP 173 (313)
Q Consensus 97 L~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~---~~~~i~~v~q~~~~~~~~~ltv~e~l 173 (313)
-++++|+++.|++++|+|+||||||||+++|+|.. | .+.+.+ ....++++.+++.. .+++.+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~----~-----~i~~~~ftTl~p~~G~V~~~~~~----~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH----P-----KIAPYPFTTLSPNLGVVEVSEEE----RFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC----C-----EECCCTTCSSCCEEEEEECSSSC----EEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC----c-----cccCcccceecceeeEEEecCcc----eEEEEecc
Confidence 35899999999999999999999999999999974 2 111111 12235666655310 12222221
Q ss_pred HHH---HHhcCCCCCccHHHHHHHHHH-------hhcCCCccCCCCCccCCCcchhhhhcccCccEEEE
Q 021380 174 KEA---HARRGAPWTFNPLLLLNCLKN-------LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV 232 (313)
Q Consensus 174 ~~~---~~~~~~~~~~~~~~~~~~l~~-------l~~~~~~~~~~LSgGekqRv~la~al~~~a~~li~ 232 (313)
-+. ....+.. .. +...++. +... ..++.+||+|++|++.++.+++..+.++++
T Consensus 214 Gli~~a~~~~~L~----~~-fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl 276 (416)
T 1udx_A 214 GIIEGASEGKGLG----LE-FLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL 276 (416)
T ss_dssp CCCCCGGGSCCSC----HH-HHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE
T ss_pred ccccchhhhhhhh----HH-HHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE
Confidence 110 0000010 11 1111111 1112 345558999999999999988888898887
No 157
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.77 E-value=2.9e-08 Score=81.19 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=29.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|+++ +|+.++|+||||+|||||+++|++.+.
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 55555 899999999999999999999999996
No 158
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.73 E-value=2.3e-09 Score=107.02 Aligned_cols=164 Identities=14% Similarity=0.116 Sum_probs=92.4
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCC-ceeeeCCCCC---CCeEEEE
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKP---PDVATVL 155 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~-G~i~~~~~~~---~~~i~~v 155 (313)
-++++..||... +++++++.+..|+.++|+||||+|||||+++|+++++ +.. |.+.+.+... ...+.++
T Consensus 37 p~~l~~i~G~~~----~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 37 EKLIDQVIGQEH----AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP---TETLEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp SSHHHHCCSCHH----HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC---CSSCEEEEEECCTTCTTSCEEEEE
T ss_pred ccccceEECchh----hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC---cccCCeEEEeCCcccccCCcEEEE
Confidence 456777788776 8999999999999999999999999999999999998 766 6666655432 2346666
Q ss_pred eccCC--------------------CCCcccCCcccCHHHHHHhcCCCCCccHHHHHHHHHHhhc--CCCccCCCCCccC
Q 021380 156 PMDGF--------------------HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGV 213 (313)
Q Consensus 156 ~q~~~--------------------~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~LSgGe 213 (313)
++... .+....+++.+|+....... .+............+.++. ........+++|+
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~-~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~ 188 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGR-TKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPA 188 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTC-SSCCEEECTTCCHHHHHCEECCCCC----CCCCG
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccC-CCCCEEEcCCCCHHhcCceEEechhhcCCccccc
Confidence 54420 00111233333332110000 0000000000111123331 1222335799999
Q ss_pred CCcchhhhhcccCccEEEEcCcccccChhhHHHHHHhhc
Q 021380 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252 (313)
Q Consensus 214 kqRv~la~al~~~a~~li~d~~~llLDE~~~~~l~~l~~ 252 (313)
+|++........+..+|++|+.-. |++..+..|.+.++
T Consensus 189 ~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 189 HERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp GGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred cccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 999887666555556666666444 35566666655543
No 159
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.68 E-value=5.5e-08 Score=83.14 Aligned_cols=71 Identities=17% Similarity=0.159 Sum_probs=40.3
Q ss_pred EEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCEEe
Q 021380 229 VVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVI 308 (313)
Q Consensus 229 ~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~ 308 (313)
.++.+.+++. |.. +...++.+++++.+.++..+|+..|. |.+.+.+..++.. ..+..+ ....||++|
T Consensus 107 ~vv~~~~~l~--e~~---~~~~~d~vi~l~~~~e~~~~Rl~~R~---~~~~e~~~~r~~~-q~~~~~----~~~~ad~vI 173 (206)
T 1jjv_A 107 YTLFVVPLLI--ENK---LTALCDRILVVDVSPQTQLARSAQRD---NNNFEQIQRIMNS-QVSQQE----RLKWADDVI 173 (206)
T ss_dssp EEEEECTTTT--TTT---CGGGCSEEEEEECCHHHHHHHHC--------CHHHHHHHHHH-SCCHHH----HHHHCSEEE
T ss_pred EEEEEechhh--hcC---cHhhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHh-cCChHH----HHHhCCEEE
Confidence 5666665432 211 34566778999999999888887653 4455545454443 222222 233689999
Q ss_pred ccCC
Q 021380 309 KSID 312 (313)
Q Consensus 309 ~~~~ 312 (313)
++..
T Consensus 174 dn~~ 177 (206)
T 1jjv_A 174 NNDA 177 (206)
T ss_dssp ECCS
T ss_pred ECCC
Confidence 8764
No 160
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.66 E-value=7.1e-09 Score=94.44 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=45.4
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~ 143 (313)
+.++++++.|+.. . ++++|+ +|++++|+|+||+||||++..|++++. +..|+|.+
T Consensus 77 ~~~~~l~~~~~~~-----~-~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~~v~l 131 (295)
T 1ls1_A 77 TVYEALKEALGGE-----A-RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLL 131 (295)
T ss_dssp HHHHHHHHHTTSS-----C-CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTCCEEE
T ss_pred HHHHHHHHHHCCC-----C-ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEE
Confidence 4567888888643 2 678888 899999999999999999999999998 76666554
No 161
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.63 E-value=3.6e-09 Score=100.00 Aligned_cols=40 Identities=25% Similarity=0.408 Sum_probs=35.3
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHH------------HhcccCCCCceeeeCC
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVR------------RINKIWPQKASSFDSQ 145 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~G------------ll~~~~p~~G~i~~~~ 145 (313)
.+.+|.++||+|+||||||||+++|+| .+. |+.|.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~---p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID---PEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC---TTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeec---ceeeeeeeCC
Confidence 567899999999999999999999999 344 8889988876
No 162
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.63 E-value=7.6e-09 Score=84.71 Aligned_cols=60 Identities=10% Similarity=0.092 Sum_probs=47.9
Q ss_pred CccCCCCCccCCCcchhh------hhcccCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChH
Q 021380 203 SVYAPSFDHGVGDPVEDD------ILVGLQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLD 262 (313)
Q Consensus 203 ~~~~~~LSgGekqRv~la------~al~~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~ 262 (313)
++++.+||||||||++|| ++++.+++++++|+|+..||+. +.+.+.++.. .+|++|||.+
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~ 124 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE 124 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH
Confidence 456779999999999886 7888899999999999999994 4444444433 2579999985
No 163
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.62 E-value=1.9e-08 Score=86.08 Aligned_cols=28 Identities=39% Similarity=0.515 Sum_probs=24.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++|++++|+||||||||||+++|+|+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5789999999999999999999999984
No 164
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.57 E-value=1.7e-08 Score=85.31 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=24.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999996
No 165
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.57 E-value=1.1e-08 Score=104.95 Aligned_cols=90 Identities=14% Similarity=0.143 Sum_probs=68.1
Q ss_pred HHHHhhcC---CCccCCCCCccCCCcchhhhhcccCc--cEEEEcCcccccCh----hhHHHHHHhhc---CeEEEEcCh
Q 021380 194 CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDG----GVWKDVSSMFD---EKWFIEVDL 261 (313)
Q Consensus 194 ~l~~l~~~---~~~~~~~LSgGekqRv~la~al~~~a--~~li~d~~~llLDE----~~~~~l~~l~~---~~i~vtHd~ 261 (313)
.|..++.. .++.+.+|||||+|||.||.+++..+ .++++|+|+..||+ .+++.|..+.+ .+|+|+||+
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 45566633 47788899999999999999999988 59999999999998 34444444443 357999999
Q ss_pred HHHHH--HHH----------hhhhccCChhHHHH
Q 021380 262 DTAMQ--RVL----------KRHISTGKPPDVAK 283 (313)
Q Consensus 262 ~~~~~--rvi----------gr~v~~G~~~e~~~ 283 (313)
+++.. |++ |++++.|+++++..
T Consensus 442 ~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 442 DVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp HHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred HHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 96643 433 56778888877643
No 166
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.57 E-value=2.5e-08 Score=84.87 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=29.2
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (313)
++|.+|++++|+|||||||||++++|++++. |+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~---~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS---TSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT---CCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC---CCeE
Confidence 3578999999999999999999999999986 6544
No 167
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.51 E-value=1e-08 Score=95.12 Aligned_cols=60 Identities=22% Similarity=0.180 Sum_probs=53.0
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~ 143 (313)
+++.+++.+.|+... +++++++.+.+|.+++|+|+||+|||||++.|++.+. +..|++.+
T Consensus 30 ~ie~~~~~~~~~~~~----~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~---~~~~~v~v 89 (341)
T 2p67_A 30 LVESRHPRHQALSTQ----LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI---REGLKVAV 89 (341)
T ss_dssp HHHCCCHHHHHHHHH----HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH---HTTCCEEE
T ss_pred HhhcCCchhhhHHHH----HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH---hcCCeEEE
Confidence 577788888888776 8999999999999999999999999999999999997 77776654
No 168
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.51 E-value=2.9e-07 Score=78.40 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=41.2
Q ss_pred cEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCEE
Q 021380 228 KVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLV 307 (313)
Q Consensus 228 ~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i 307 (313)
.+++.|++++.-. .+..+.+.+++++-+.++..+|+..| |...+.+..++... .+. .+....||++
T Consensus 106 ~~vive~~~l~~~-----~~~~~~~~~i~l~~~~e~~~~Rl~~R----~~~~~~~~~~~~~~-~~~----~~~~~~ad~v 171 (204)
T 2if2_A 106 TLFILEASLLVEK-----GTYKNYDKLIVVYAPYEVCKERAIKR----GMSEEDFERRWKKQ-MPI----EEKVKYADYV 171 (204)
T ss_dssp CCEEEECSCSTTT-----TCGGGSSEEEEECCCHHHHHHHHHHT----CCCHHHHHHHHTTS-CCH----HHHGGGCSEE
T ss_pred CEEEEEccccccC-----CchhhCCEEEEEECCHHHHHHHHHHc----CCCHHHHHHHHHhC-CCh----hHHHhcCCEE
Confidence 5667777654321 12234566789999999888888766 44434344444332 222 2334567999
Q ss_pred eccC
Q 021380 308 IKSI 311 (313)
Q Consensus 308 ~~~~ 311 (313)
|++.
T Consensus 172 Id~~ 175 (204)
T 2if2_A 172 IDNS 175 (204)
T ss_dssp CCCS
T ss_pred EECC
Confidence 8875
No 169
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.50 E-value=9.1e-09 Score=100.14 Aligned_cols=135 Identities=17% Similarity=0.092 Sum_probs=78.7
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCC--------
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-------- 149 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~-------- 149 (313)
.+++++...|.+.. +++++++.+++| +.|+||||+|||||++.|++... .+.+.+++.+..
T Consensus 41 ~~l~~lv~~l~~~~----~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~ 109 (499)
T 2dhr_A 41 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGA 109 (499)
T ss_dssp HHHHHHHHHHHCGG----GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHH
T ss_pred HHHHHHHHHhhchh----hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHH
Confidence 44566666676655 899999999999 99999999999999999999874 456666543211
Q ss_pred CeEEEEeccCCCCCcccCCcccCHHHHHHhcCC----CCCccHHHHHHHHHHhhcCCCccCCCCCccCCCcchhhhhccc
Q 021380 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 225 (313)
Q Consensus 150 ~~i~~v~q~~~~~~~~~ltv~e~l~~~~~~~~~----~~~~~~~~~~~~l~~l~~~~~~~~~~LSgGekqRv~la~al~~ 225 (313)
..+..+++..... .+.+.+.|++.......+. ........+..++. .||||++++..++.+...
T Consensus 110 ~~v~~lfq~a~~~-~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~-----------~Ldg~~~~~~viviAatn 177 (499)
T 2dhr_A 110 ARVRDLFETAKRH-APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-----------EMDGFEKDTAIVVMAATN 177 (499)
T ss_dssp HHHHHHTTTSSSS-SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH-----------HGGGCCSSCCCEEEECCS
T ss_pred HHHHHHHHHHHhc-CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH-----------HhcccccCccEEEEEecC
Confidence 1123344442211 1124455555332111110 00011122233332 367999999888666666
Q ss_pred CccEEEEcCccc
Q 021380 226 QHKVVIVDGNYL 237 (313)
Q Consensus 226 ~a~~li~d~~~l 237 (313)
.+.. +|+.++
T Consensus 178 ~p~~--LD~aLl 187 (499)
T 2dhr_A 178 RPDI--LDPALL 187 (499)
T ss_dssp CGGG--SCTTTS
T ss_pred Chhh--cCcccc
Confidence 5554 444443
No 170
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.49 E-value=1.1e-06 Score=79.94 Aligned_cols=43 Identities=23% Similarity=0.266 Sum_probs=36.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF 160 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~ 160 (313)
.+|++++|+|+||+||||+++.|++.+. +++| +.+.++.+|.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~---~~~G----------~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM---LEKH----------KKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH---HTTC----------CCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC----------CEEEEEecCcc
Confidence 5799999999999999999999999997 6666 23677887753
No 171
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.46 E-value=9.2e-08 Score=88.02 Aligned_cols=46 Identities=20% Similarity=0.140 Sum_probs=41.4
Q ss_pred cccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 98 ~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
.+++|++.+|++++|+|+||+||||++..|++.+. +..|+|.+.+.
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~---~~g~kVllid~ 141 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA---ELGYKVLIAAA 141 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH---HTTCCEEEEEC
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEeC
Confidence 68999999999999999999999999999999998 88888766443
No 172
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.45 E-value=7.3e-08 Score=80.93 Aligned_cols=28 Identities=14% Similarity=0.411 Sum_probs=25.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999885
No 173
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.37 E-value=1.9e-07 Score=79.56 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=25.7
Q ss_pred ceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 101 s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+..++|++++|+||||||||||+++|++.+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 35567899999999999999999999999873
No 174
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.36 E-value=3.4e-07 Score=86.74 Aligned_cols=30 Identities=30% Similarity=0.336 Sum_probs=25.8
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHH--HHhc
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVV--RRIN 132 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~--Gll~ 132 (313)
-|++|++++|+||||||||||++.|+ ++++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p 205 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP 205 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC
Confidence 68999999999999999999999554 5554
No 175
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=98.34 E-value=2.5e-07 Score=88.30 Aligned_cols=57 Identities=11% Similarity=-0.002 Sum_probs=45.6
Q ss_pred CCCccCCCcchhhhhcc----cCccEEEEcCcccccChh----hHHHHHHhhc---CeEEEEcChHHH
Q 021380 208 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGG----VWKDVSSMFD---EKWFIEVDLDTA 264 (313)
Q Consensus 208 ~LSgGekqRv~la~al~----~~a~~li~d~~~llLDE~----~~~~l~~l~~---~~i~vtHd~~~~ 264 (313)
.||||||||++||++++ .++.++++|+++..||+. +.+.|.++.. .+|++||+....
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~ 400 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF 400 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH
Confidence 49999999999999998 578999999999999994 4444444432 357999997654
No 176
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.34 E-value=1.4e-07 Score=88.56 Aligned_cols=37 Identities=27% Similarity=0.317 Sum_probs=35.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|+++++.+++|++++|+||||||||||+++|+|.+.
T Consensus 158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 7899999999999999999999999999999999763
No 177
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.32 E-value=1.8e-07 Score=81.70 Aligned_cols=31 Identities=19% Similarity=0.179 Sum_probs=27.6
Q ss_pred cceeecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 100 is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-++..++|++++|.|+||||||||+++|+|+
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3446689999999999999999999999886
No 178
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.31 E-value=3.6e-07 Score=79.52 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=26.5
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-+++|++++|+||||||||||++.|++.
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 5889999999999999999999999995
No 179
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.30 E-value=1.2e-07 Score=92.37 Aligned_cols=156 Identities=12% Similarity=0.003 Sum_probs=79.2
Q ss_pred ccceeecCCeEEEEECCCCCCHHHHHHHHHH-HhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccC--CcccCHHH
Q 021380 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR-RINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL--DAMEDPKE 175 (313)
Q Consensus 99 ~is~~i~~Geiv~IiGpNGsGKSTLlk~L~G-ll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~l--tv~e~l~~ 175 (313)
.+++++.++..+.|.|++||||||+++.|.. ++.. .+.|++.+...+.+. .. ++. +... +++ ++..+...
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~--~~p~~v~l~liDpK~-~e--l~~-~~~l-Phl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK--AQPEDVRFIMIDPKM-LE--LSV-YEGI-PHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT--CCTTTEEEEEECCSS-SG--GGG-GTTC-TTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh--CCCceEEEEEECCch-hh--hhh-hccC-CcccceeecCHHH
Confidence 4788899999999999999999999999876 3321 455655443222211 00 111 1111 112 35555544
Q ss_pred HHHhcCCCCCccHHHHHHHHHHhhcCC----CccC-CCCCccCCCcch----------hhhhcccCcc-EEEEcCccccc
Q 021380 176 AHARRGAPWTFNPLLLLNCLKNLRNQG----SVYA-PSFDHGVGDPVE----------DDILVGLQHK-VVIVDGNYLFL 239 (313)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~-~~LSgGekqRv~----------la~al~~~a~-~li~d~~~llL 239 (313)
..........+...+ .++|...+... +.++ ..+|+|++|+.. ++..+...+. +++.|+...++
T Consensus 232 a~~~L~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll 310 (512)
T 2ius_A 232 AANALRWCVNEMERR-YKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLM 310 (512)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHH
Confidence 322111111111222 24444444211 1111 257899998742 2223333454 66777776666
Q ss_pred Ch---hhHHHHHHhh---c----CeEEEEcChH
Q 021380 240 DG---GVWKDVSSMF---D----EKWFIEVDLD 262 (313)
Q Consensus 240 DE---~~~~~l~~l~---~----~~i~vtHd~~ 262 (313)
+. .+.+.+..+. . ..|++||.+.
T Consensus 311 ~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 311 MTVGKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 53 2223333332 2 1368999977
No 180
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.30 E-value=9.2e-06 Score=68.91 Aligned_cols=65 Identities=11% Similarity=0.108 Sum_probs=39.7
Q ss_pred cChhhHHHHHHhhc---CeEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCEEeccC
Q 021380 239 LDGGVWKDVSSMFD---EKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADLVIKSI 311 (313)
Q Consensus 239 LDE~~~~~l~~l~~---~~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~i~~~~ 311 (313)
+++...+.+.++.. .+|+++-+.+++.+|+..|.... .+.+.+..++.....+ ....+|++|++.
T Consensus 96 ~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~-~~~~~~~~~~~~~~~~-------~~~~~~~~Id~~ 163 (202)
T 3t61_A 96 LKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHF-MPSSLLQTQLETLEDP-------RGEVRTVAVDVA 163 (202)
T ss_dssp CSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSC-CCHHHHHHHHHHCCCC-------TTSTTEEEEESS
T ss_pred CCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccC-CCHHHHHHHHHhcCCC-------CCCCCeEEEeCC
Confidence 45566666666552 35789999999888887664321 2355555555443322 344578888765
No 181
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.29 E-value=3e-07 Score=90.49 Aligned_cols=40 Identities=28% Similarity=0.228 Sum_probs=34.8
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc-eee-eCC
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-SSF-DSQ 145 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G-~i~-~~~ 145 (313)
.+.+|++++|+|+||||||||+++|+|.+. |++| ++. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~---~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM---EMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH---TTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc---ccCCceEEEECC
Confidence 678999999999999999999999999998 8876 553 443
No 182
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=98.28 E-value=3.2e-07 Score=76.89 Aligned_cols=63 Identities=11% Similarity=-0.015 Sum_probs=48.5
Q ss_pred CccCCCCCccCCCcchhhhhccc----CccEEEEcCcccccChh----hHHHHHHhhcC--eEEEEcChHHHH
Q 021380 203 SVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGG----VWKDVSSMFDE--KWFIEVDLDTAM 265 (313)
Q Consensus 203 ~~~~~~LSgGekqRv~la~al~~----~a~~li~d~~~llLDE~----~~~~l~~l~~~--~i~vtHd~~~~~ 265 (313)
.+.+..||||||||++||++++. ++.++++|++...||+. +.+.|.++... .|+|||+.....
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~ 131 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMA 131 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHH
Confidence 34567899999999999999963 47999999999999994 44444444332 579999976543
No 183
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.27 E-value=4.2e-07 Score=78.06 Aligned_cols=28 Identities=29% Similarity=0.513 Sum_probs=26.6
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999999986
No 184
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=98.25 E-value=4.5e-07 Score=88.69 Aligned_cols=62 Identities=16% Similarity=0.055 Sum_probs=49.9
Q ss_pred cCCCC-CccCCCcchhhhhcccCc--cEEEEcCcccccChh----hHHHHHHhhc--CeEEEEcChHHHHH
Q 021380 205 YAPSF-DHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGG----VWKDVSSMFD--EKWFIEVDLDTAMQ 266 (313)
Q Consensus 205 ~~~~L-SgGekqRv~la~al~~~a--~~li~d~~~llLDE~----~~~~l~~l~~--~~i~vtHd~~~~~~ 266 (313)
++..| ||||+||++||++++.++ ++|++|+|+..||.. +.+.|.++.+ .+|+||||++++..
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~ 463 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 463 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHH
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 45577 999999999999999999 999999999999983 4444444432 35799999987754
No 185
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.24 E-value=1.8e-07 Score=92.18 Aligned_cols=60 Identities=23% Similarity=0.307 Sum_probs=52.0
Q ss_pred EEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCC
Q 021380 79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146 (313)
Q Consensus 79 ~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~ 146 (313)
-++++.+.|+... ++.++++++ +|+.++|+||||+|||||+++|++.+. +..|.|.+++.
T Consensus 85 G~~~vk~~i~~~~----~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~i~~~~~ 144 (543)
T 3m6a_A 85 GLEKVKERILEYL----AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG---RKFVRISLGGV 144 (543)
T ss_dssp SCHHHHHHHHHHH----HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT---CEEEEECCCC-
T ss_pred cHHHHHHHHHHHH----HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC---CCeEEEEeccc
Confidence 3577888887766 889999999 899999999999999999999999998 88888887663
No 186
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.23 E-value=4.4e-06 Score=73.26 Aligned_cols=60 Identities=15% Similarity=0.242 Sum_probs=39.0
Q ss_pred CeEEEEcChHHHHHHHHhhhhccC--ChhHHHHHHHHhcCCchHH-HHHhhcCCCC-EEeccCC
Q 021380 253 EKWFIEVDLDTAMQRVLKRHISTG--KPPDVAKWRIEYNDRPNAE-LIMKSKKNAD-LVIKSID 312 (313)
Q Consensus 253 ~~i~vtHd~~~~~~rvigr~v~~G--~~~e~~~~~~~~~~~~~~~-~i~~~~~~aD-~i~~~~~ 312 (313)
-.||++-++++..+|+..+....| ...+-+...+...+..... |+.|.+...| ++|++++
T Consensus 148 lkifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~ 211 (233)
T 3r20_A 148 VKIFLTASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSD 211 (233)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTT
T ss_pred EEEEEECCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCC
Confidence 458999999998888876555443 2333333344444444444 7788777666 9998864
No 187
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.19 E-value=9.5e-07 Score=73.24 Aligned_cols=28 Identities=39% Similarity=0.617 Sum_probs=25.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|++++|+|+|||||||+++.|++.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 5799999999999999999999999873
No 188
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.14 E-value=2.1e-06 Score=77.32 Aligned_cols=72 Identities=19% Similarity=0.441 Sum_probs=47.3
Q ss_pred ccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCE
Q 021380 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 227 a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~ 306 (313)
..+++.|+.+++-. .+...++.+|+++-+.+++.+|+..|. |.+.+.+..++... .+..+++ ..||+
T Consensus 181 ~~~vIveg~~l~~~-----~~~~~~d~vI~l~a~~ev~~~Rl~~R~---g~s~e~~~~ri~~q-~~~~~~~----~~AD~ 247 (281)
T 2f6r_A 181 KTLCVIDAAMLLEA-----GWQSMVHEVWTVVIPETEAVRRIVERD---GLSEAAAQSRLQSQ-MSGQQLV----EQSNV 247 (281)
T ss_dssp CCEEEEECTTTTTT-----TGGGGCSEEEEEECCHHHHHHHHHHHH---CCCHHHHHHHHHTS-CCHHHHH----HTCSE
T ss_pred CCEEEEEechhhcc-----chHHhCCEEEEEcCCHHHHHHHHHHcC---CCCHHHHHHHHHHc-CChHhhH----hhCCE
Confidence 46788898865422 133456778999999999888888663 54555555555544 4444444 35899
Q ss_pred EeccC
Q 021380 307 VIKSI 311 (313)
Q Consensus 307 i~~~~ 311 (313)
+|++.
T Consensus 248 vIdn~ 252 (281)
T 2f6r_A 248 VLSTL 252 (281)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99876
No 189
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.14 E-value=1.1e-06 Score=72.59 Aligned_cols=27 Identities=41% Similarity=0.646 Sum_probs=24.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.|.+++|+|+|||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999985
No 190
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.12 E-value=1.2e-06 Score=73.90 Aligned_cols=39 Identities=26% Similarity=0.196 Sum_probs=29.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc--CC------CCceeeeCCC
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRINKI--WP------QKASSFDSQV 146 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~~~--~p------~~G~i~~~~~ 146 (313)
-.++|+|+||||||||++.++|..... .| +.|+|.++|.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~ 76 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGK 76 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCE
Confidence 378999999999999999999987510 01 3677777663
No 191
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.11 E-value=1.6e-06 Score=74.12 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=26.7
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+...+|++++|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3456899999999999999999999999874
No 192
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.10 E-value=4.5e-05 Score=62.19 Aligned_cols=79 Identities=16% Similarity=0.068 Sum_probs=44.3
Q ss_pred ccEEEEcCcccccChhhHHHHHHhhc---CeEEEEcChHHHHHHHHhhhhc-cCChhHHHHHHHHhcCCchHHHHHhhcC
Q 021380 227 HKVVIVDGNYLFLDGGVWKDVSSMFD---EKWFIEVDLDTAMQRVLKRHIS-TGKPPDVAKWRIEYNDRPNAELIMKSKK 302 (313)
Q Consensus 227 a~~li~d~~~llLDE~~~~~l~~l~~---~~i~vtHd~~~~~~rvigr~v~-~G~~~e~~~~~~~~~~~~~~~~i~~~~~ 302 (313)
...++.|+- ++....+.+.+... .+|++.-+.+.+.+|+..|.-. .+...+.+..++.... ...+.+...
T Consensus 78 ~~~vi~dg~---~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~---~~~~~~~~~ 151 (179)
T 3lw7_A 78 HDLVVFDGV---RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREEL---KLGIGEVIA 151 (179)
T ss_dssp CSCEEEECC---CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHH---HHTHHHHHH
T ss_pred CCeEEEeCC---CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhh---ccChHhHHH
Confidence 455677773 55555666666654 4679999999988888755321 1222232222221100 111344556
Q ss_pred CCCEEeccC
Q 021380 303 NADLVIKSI 311 (313)
Q Consensus 303 ~aD~i~~~~ 311 (313)
.||++|++.
T Consensus 152 ~ad~vId~~ 160 (179)
T 3lw7_A 152 MADYIITND 160 (179)
T ss_dssp TCSEEEECC
T ss_pred hCCEEEECC
Confidence 799999875
No 193
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.10 E-value=3.9e-06 Score=80.71 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=73.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCCCCCeEEEEeccCCCCCcccCCcccCHH-
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK- 174 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~~~~~i~~v~q~~~~~~~~~ltv~e~l~- 174 (313)
.|+++..-+.+|+++.|.|++|+|||||+..|++... +..| ..+.|+..+.. .. .+...+.
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~---~~~g----------~~Vl~~s~E~s---~~--~l~~r~~~ 253 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA---TKTN----------ENVAIFSLEMS---AQ--QLVMRMLC 253 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH---HHSS----------CCEEEEESSSC---HH--HHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhCC----------CcEEEEECCCC---HH--HHHHHHHH
Confidence 7888888899999999999999999999999999875 4333 12455554411 00 0000000
Q ss_pred ------HHHHhcCCCCCccHHHHHHHHHHhhcCC--CccCCCCCccCCCcchhhhhcccCccEEEEcCcccccC
Q 021380 175 ------EAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240 (313)
Q Consensus 175 ------~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~LSgGekqRv~la~al~~~a~~li~d~~~llLD 240 (313)
......+.....+..++.+.+..+.... -...+.+|.++.+..+.......++++++.|...++.+
T Consensus 254 ~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 254 AEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 0000111111223334455555554211 11235788887653332222235789999999888774
No 194
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.07 E-value=3.4e-06 Score=73.69 Aligned_cols=37 Identities=24% Similarity=0.423 Sum_probs=27.6
Q ss_pred cccccceeec---CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVN---VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~---~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-|.++||.+. +|.+++|.|++||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3566666665 999999999999999999999999996
No 195
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.06 E-value=1.9e-06 Score=80.77 Aligned_cols=53 Identities=21% Similarity=0.237 Sum_probs=46.9
Q ss_pred eEEEccceeEcccccccccccc--------------ccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 77 VVEARCMDEVYDALAQRLLPTS--------------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~--------------~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+.++||+..|.... ..|+ |+.+.+.+|+.++|+||+|+|||||++.|++.+.
T Consensus 133 ri~Fe~ltp~yP~er---~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 133 KILFENLTPLHANSR---LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp SCCTTTSCEESCCSB---CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CceeccccccCCCCc---cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 377999999997532 2777 8999999999999999999999999999999875
No 196
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.05 E-value=2.1e-06 Score=81.77 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=43.2
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~ 143 (313)
.+++++.|++.. ++++|+ +|.+++|+|+|||||||++..|++.+. +..|+|.+
T Consensus 79 ~~~L~~~~~~~~------~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~---~~g~~Vll 131 (425)
T 2ffh_A 79 YEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGRRPLL 131 (425)
T ss_dssp HHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEE
T ss_pred HHHHHHHhCCCc------ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeEEE
Confidence 356777886532 578887 899999999999999999999999998 76666554
No 197
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.04 E-value=1.2e-06 Score=75.53 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=30.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeee
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~ 143 (313)
+.+++|+||+||||||++++|++.+...+++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999988311277888765
No 198
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.04 E-value=9.2e-06 Score=69.07 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..-++||+|+.||||||+.+.|+..+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999998764
No 199
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.02 E-value=1.7e-06 Score=78.64 Aligned_cols=53 Identities=13% Similarity=0.142 Sum_probs=42.5
Q ss_pred EccceeEccccccccccccc-cceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceee
Q 021380 80 ARCMDEVYDALAQRLLPTSA-LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~-is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~ 142 (313)
.+++.+.|++.. ++ ++|+.+ |.+++++|+||+||||++..|++.+. +..|+|.
T Consensus 77 ~~~l~~~~~~~~------~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~---~~g~~v~ 130 (297)
T 1j8m_F 77 YDELSNLFGGDK------EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK---KKGFKVG 130 (297)
T ss_dssp HHHHHHHTTCSC------CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH---HTTCCEE
T ss_pred HHHHHHHhcccc------ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEE
Confidence 456777786532 46 888877 99999999999999999999999997 6555544
No 200
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.00 E-value=3e-06 Score=70.60 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=25.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|++++|+|++||||||+++.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999999985
No 201
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=98.00 E-value=4.8e-06 Score=67.82 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=25.6
Q ss_pred ccceeecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 99 ~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+.++++.+| +.+|+|||||||||++..|.-.+
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 344455544 89999999999999999998665
No 202
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.99 E-value=3.5e-06 Score=78.29 Aligned_cols=40 Identities=33% Similarity=0.426 Sum_probs=34.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeCCCC
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK 147 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~~~~ 147 (313)
.++.+++|+|++|||||||++.|+|.+. +..|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~---~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT---ERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh---hcCCeEEEEeec
Confidence 3578999999999999999999999998 888887664443
No 203
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.96 E-value=3.2e-06 Score=71.47 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+||||||||++.|+|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999999974
No 204
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.94 E-value=2.6e-06 Score=73.05 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=31.3
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCc
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA 139 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G 139 (313)
+.+.+|.+++|+|++||||||+++.|++.+. |..|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~---~~~g 54 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV---RDRR 54 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH---HHHC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc---cccC
Confidence 4578899999999999999999999999996 5666
No 205
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.93 E-value=1.4e-06 Score=80.28 Aligned_cols=53 Identities=26% Similarity=0.443 Sum_probs=44.2
Q ss_pred ccceeEccccccccccccccceeecCCeE--EEEECCCCCCHHHHHHHHHHHhcccCCCCce
Q 021380 81 RCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (313)
Q Consensus 81 ~~ls~~y~~~~~~~~iL~~is~~i~~Gei--v~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (313)
++++..||... +++.++..+..|++ +.|.||+|+||||+++++++.+. +..+.
T Consensus 22 ~~~~~~~g~~~----~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~---~~~~~ 76 (340)
T 1sxj_C 22 ETLDEVYGQNE----VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY---GKNYS 76 (340)
T ss_dssp SSGGGCCSCHH----HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH---TTSHH
T ss_pred CcHHHhcCcHH----HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc---CCCcc
Confidence 44555666655 88999999999998 99999999999999999999986 55543
No 206
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.90 E-value=3.3e-05 Score=64.30 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.++.|+|+.||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998874
No 207
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.89 E-value=7.7e-06 Score=71.08 Aligned_cols=37 Identities=19% Similarity=0.439 Sum_probs=29.5
Q ss_pred ccccc-ceeecCCeEEEEECCCCCCHHHHHHHH-HHHhc
Q 021380 96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEV-VRRIN 132 (313)
Q Consensus 96 iL~~i-s~~i~~Geiv~IiGpNGsGKSTLlk~L-~Gll~ 132 (313)
.|+.+ .--+++|++++|+||||||||||+..+ .+..+
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 56665 667899999999999999999996555 44443
No 208
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.89 E-value=8.9e-06 Score=68.09 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=28.4
Q ss_pred ceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 101 s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+...+|.+++|+|++||||||+++.|++.+.
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34557899999999999999999999999987
No 209
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.88 E-value=3.7e-06 Score=78.29 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=39.4
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHH--HhcccCCCCceee
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR--RINKIWPQKASSF 142 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~G--ll~~~~p~~G~i~ 142 (313)
++++.+.|+... ...+|++++++++ .|+|+|++|||||||++.|+| +++ ...|.+.
T Consensus 11 l~~~~~~~~~~~-~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp---~~~~~vT 68 (360)
T 3t34_A 11 IQRACTALGDHG-DSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP---RGSGIVT 68 (360)
T ss_dssp TTTTTTSCSSCC-SSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC---CCSSSCC
T ss_pred HHHHHHhhCccc-cccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC---CCCCccc
Confidence 466777776421 1228999999998 999999999999999999999 555 5666554
No 210
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.78 E-value=1.4e-05 Score=66.90 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=27.1
Q ss_pred ccceeecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 99 ~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
++|+...+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999987
No 211
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.77 E-value=8.7e-06 Score=77.59 Aligned_cols=45 Identities=18% Similarity=0.387 Sum_probs=37.7
Q ss_pred EEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 78 l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
|+++|+ +.|++.. .+++.+|++++|+||||||||||+++|.+++.
T Consensus 7 l~~~~~-~~~~~~~---------~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 7 LELSNF-KSYRGVT---------KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp EEEESC-SSCCSEE---------EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEeCE-EEECCce---------eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 778898 7886432 24467799999999999999999999999986
No 212
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.75 E-value=6.4e-06 Score=80.47 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=32.5
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.+++++|++.+| +.+|+|+||||||||+..|..++
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 678899999999 99999999999999999998884
No 213
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.75 E-value=4.2e-06 Score=78.15 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=37.5
Q ss_pred eEEEccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 77 ~l~v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.+.++++.|+.+. ++++++|+| +|+|++|+|||||++.|.|...
T Consensus 17 ~v~~~~l~~~~~~k~----~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 17 YVGFANLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp ----CCHHHHHHTHH----HHHCCEECE------EECCCTTSCHHHHHHHHTTCCC
T ss_pred eEEeccchHHhCCee----ecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC
Confidence 588999999998877 889998887 9999999999999999987643
No 214
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.69 E-value=3.6e-05 Score=65.84 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=26.4
Q ss_pred ccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 99 ~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.++++.+ .+.+|+|||||||||++..|.-.+-
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34455554 5999999999999999999987664
No 215
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.69 E-value=0.00092 Score=57.45 Aligned_cols=73 Identities=21% Similarity=0.195 Sum_probs=49.1
Q ss_pred ccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCE
Q 021380 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 227 a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~ 306 (313)
..+++.|-|+++=. ..+..+++.+|+|+-+.+...+|+..|. |.+.+.+..++.. ..+.++ ....||+
T Consensus 112 ~~~vv~d~pLL~E~----~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd---g~s~eea~~ri~~-Q~~~ee----k~~~AD~ 179 (210)
T 4i1u_A 112 GPYVIFVVPLLVES----RNWKARCDRVLVVDCPVDTQIARVMQRN---GFTREQVEAIIAR-QATREA----RLAAADD 179 (210)
T ss_dssp SSSEEEECTTCTTC----HHHHHHCSEEEEEECCHHHHHHHHHHHH---CCCHHHHHHHHHH-SCCHHH----HHHTCSE
T ss_pred CCEEEEEEeccccc----CCccccCCeEEEEECCHHHHHHHHHhcC---CCCHHHHHHHHHH-cCChHH----HHHhCCE
Confidence 34577787765421 2345678899999999999888888665 5555655554443 334433 3478999
Q ss_pred EeccC
Q 021380 307 VIKSI 311 (313)
Q Consensus 307 i~~~~ 311 (313)
||+|+
T Consensus 180 VIdN~ 184 (210)
T 4i1u_A 180 VIVND 184 (210)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 99987
No 216
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.66 E-value=2.1e-05 Score=66.89 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=26.4
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+|.+++|+||+|||||||++.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 56899999999999999999999998773
No 217
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.59 E-value=1.9e-05 Score=73.76 Aligned_cols=59 Identities=12% Similarity=0.035 Sum_probs=44.4
Q ss_pred cCCCCCccCCCcch------hhhhcccC-ccEEEEcCcccccChhhH----HHHHHhhc--CeEEEEcChHH
Q 021380 205 YAPSFDHGVGDPVE------DDILVGLQ-HKVVIVDGNYLFLDGGVW----KDVSSMFD--EKWFIEVDLDT 263 (313)
Q Consensus 205 ~~~~LSgGekqRv~------la~al~~~-a~~li~d~~~llLDE~~~----~~l~~l~~--~~i~vtHd~~~ 263 (313)
++..|||||+||++ +|+++... +.++++|+|+..||+... +.|.++.. .++++|||++.
T Consensus 277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~ 348 (371)
T 3auy_A 277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHREL 348 (371)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGG
T ss_pred chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHH
Confidence 34589999999985 45677778 999999999999999444 44444322 36799999863
No 218
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.58 E-value=3.8e-05 Score=71.49 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=31.6
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcee
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i 141 (313)
-+++|+++.|.||||||||||+..++.... +..|.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~---~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ---KMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH---HTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH---hcCCeE
Confidence 478999999999999999999999999986 555544
No 219
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.55 E-value=4.7e-05 Score=63.34 Aligned_cols=28 Identities=39% Similarity=0.684 Sum_probs=24.7
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|.+++|+|++||||||+.+.|+..+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999999998764
No 220
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.53 E-value=5.6e-05 Score=65.85 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=25.9
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-.+|.+++|+|++||||||+++.|++.+.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999999999774
No 221
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.52 E-value=6.1e-05 Score=69.57 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=32.3
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-|+.+.--+.+|+++.|.|++|+|||||+..++....
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5666666799999999999999999999999988764
No 222
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.51 E-value=4.2e-05 Score=63.06 Aligned_cols=27 Identities=37% Similarity=0.429 Sum_probs=23.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.+|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999864
No 223
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.50 E-value=2.1e-05 Score=66.49 Aligned_cols=33 Identities=21% Similarity=0.113 Sum_probs=29.7
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
+++++||..+++ .++|+|++|+|||||++.+.+
T Consensus 15 ~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 789999998877 578999999999999999976
No 224
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.48 E-value=4e-05 Score=69.58 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=23.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++.+++|+|++|+|||||++.|.|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 455689999999999999999999864
No 225
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.48 E-value=5.6e-05 Score=63.29 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=21.0
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
+++++++..++. .++|+|++|+|||||++.+.+-
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 788899988776 7899999999999999999883
No 226
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.47 E-value=5.2e-05 Score=71.41 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=32.4
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH-----------hcccCCCCceeeeCC
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR-----------INKIWPQKASSFDSQ 145 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gl-----------l~~~~p~~G~i~~~~ 145 (313)
.+..|..++|+|+||+|||||++.|+|. +. |..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~---p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTID---PNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------C---CSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccC---ceeEEEEECC
Confidence 4567889999999999999999999997 44 7778777654
No 227
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.45 E-value=0.00016 Score=66.00 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=31.7
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.|+++.--+.+|+++.|.|++|+|||||+..++...
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 577777679999999999999999999998888665
No 228
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.43 E-value=5.6e-05 Score=66.66 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=30.3
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.+.+ ...++.++.|+|++||||||+.+.|+..+.
T Consensus 22 ~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 22 LTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp HHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred HHccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 444444 677889999999999999999999999874
No 229
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.41 E-value=8.8e-05 Score=60.58 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|+|++||||||+++.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 789999999999999999999875
No 230
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.41 E-value=8.5e-05 Score=65.31 Aligned_cols=35 Identities=29% Similarity=0.489 Sum_probs=26.1
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.++++.+++| +.|.||+|+|||||++.|++.+.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455566666666 88999999999999999999885
No 231
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.40 E-value=8.8e-05 Score=61.97 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=23.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++|+|++|||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999999885
No 232
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.36 E-value=9.9e-05 Score=74.27 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=31.6
Q ss_pred ceeecCCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcee
Q 021380 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (313)
Q Consensus 101 s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i 141 (313)
|+++.++..++|+|+||+|||||++.|++..... +..|+|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee
Confidence 4567899999999999999999999999887511 367777
No 233
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.32 E-value=9.1e-05 Score=60.35 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|++|+|||||++.++|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999854
No 234
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.31 E-value=0.00015 Score=59.76 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999999874
No 235
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.27 E-value=0.00017 Score=63.72 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++|+||+|||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3789999999999999999999875
No 236
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.26 E-value=0.00018 Score=59.89 Aligned_cols=28 Identities=21% Similarity=0.475 Sum_probs=25.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999998764
No 237
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.26 E-value=0.00016 Score=68.95 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=28.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCcee
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i 141 (313)
++.+++++|+|||||||++..|++.+. +..++|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~---~~G~kV 128 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK---KRGYKV 128 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH---HTTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCeE
Confidence 589999999999999999999999997 554444
No 238
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.26 E-value=0.00015 Score=67.17 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=26.8
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+++|+++.|.||||||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999988887664
No 239
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.25 E-value=0.00019 Score=61.44 Aligned_cols=24 Identities=42% Similarity=0.601 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
++-+++|.|++||||||+++.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999988
No 240
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.25 E-value=0.00019 Score=59.61 Aligned_cols=26 Identities=23% Similarity=0.483 Sum_probs=23.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
|.+++|.|++||||||+++.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998774
No 241
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.24 E-value=0.00024 Score=66.55 Aligned_cols=36 Identities=25% Similarity=0.161 Sum_probs=30.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccCCCCceeeeC
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS 144 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~i~~~ 144 (313)
.+.-++|+|++|||||||++.|++.+. +..+.|.+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~---~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY---MQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH---HCCCEEEEE
Confidence 566789999999999999999999887 777777654
No 242
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.23 E-value=0.00016 Score=59.71 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999885
No 243
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.23 E-value=0.0002 Score=60.16 Aligned_cols=24 Identities=38% Similarity=0.708 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|+|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999885
No 244
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.22 E-value=5.1e-05 Score=73.30 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=37.0
Q ss_pred EccceeEccccccccccccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 80 v~~ls~~y~~~~~~~~iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++++...|.... .++++++.+++| +.|+||+|+|||||++.|++...
T Consensus 28 l~e~v~~l~~~~----~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 28 LKEVVEFLKDPS----KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHHHHHHHHCTH----HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhChH----HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 344444454444 678888888888 78999999999999999999875
No 245
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.21 E-value=0.00018 Score=68.61 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=22.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+||+|||||++.|+|..
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred ceEEEECCCCCCHHHHHHHHhCCc
Confidence 489999999999999999999975
No 246
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.20 E-value=0.00016 Score=67.49 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=27.0
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
.+++..+++.+ .+.+|+|+|||||||++..|.=
T Consensus 15 ~~~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 15 SHVNSRIKFEK-GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp TEEEEEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred cccceEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 34556667666 4899999999999999999975
No 247
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.20 E-value=0.00016 Score=59.69 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|++|+|||||++.|+|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999984
No 248
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.18 E-value=0.0002 Score=59.25 Aligned_cols=29 Identities=31% Similarity=0.489 Sum_probs=25.4
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.++.++.|+|++||||||+++.|+..+.
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 34677899999999999999999998774
No 249
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.15 E-value=0.0001 Score=66.36 Aligned_cols=30 Identities=23% Similarity=0.377 Sum_probs=26.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccCCCCce
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~~~~p~~G~ 140 (313)
..+.|.||+|+||||+++.|++.+. +..|.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~---~~~~~ 77 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF---DTEEA 77 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH---SCGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc---CCCcc
Confidence 6899999999999999999999997 55554
No 250
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.15 E-value=8.7e-05 Score=63.04 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999985
No 251
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.13 E-value=0.00032 Score=59.15 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477999999999999999999999885
No 252
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.12 E-value=0.00028 Score=59.22 Aligned_cols=72 Identities=19% Similarity=0.321 Sum_probs=41.7
Q ss_pred ccEEEEcCcccccChhhHHHHHHhhcCeEEEEcChHHHHHHHHhhhhccCChhHHHHHHHHhcCCchHHHHHhhcCCCCE
Q 021380 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEKWFIEVDLDTAMQRVLKRHISTGKPPDVAKWRIEYNDRPNAELIMKSKKNADL 306 (313)
Q Consensus 227 a~~li~d~~~llLDE~~~~~l~~l~~~~i~vtHd~~~~~~rvigr~v~~G~~~e~~~~~~~~~~~~~~~~i~~~~~~aD~ 306 (313)
.++++.|++++.-+. +....+.+++++-+.+...+|+..|. |...+.+...+.. ..+.. +....||+
T Consensus 106 ~~~vi~d~~~l~~~~-----~~~~~d~~i~l~~~~e~~~~R~~~R~---~~~~~~~~~~i~~-~~~~~----~~~~~ad~ 172 (203)
T 1uf9_A 106 APLVFLEIPLLFEKG-----WEGRLHGTLLVAAPLEERVRRVMARS---GLSREEVLARERA-QMPEE----EKRKRATW 172 (203)
T ss_dssp CSEEEEECTTTTTTT-----CGGGSSEEEEECCCHHHHHHHHHTTT---CCTTHHHHHHHTT-SCCHH----HHHHHCSE
T ss_pred CCEEEEEecceeccC-----chhhCCEEEEEECCHHHHHHHHHHcC---CCCHHHHHHHHHH-CCChh----HHHHhCCE
Confidence 578888887655431 22345667899999998888877552 3233333333332 22222 22344788
Q ss_pred EeccC
Q 021380 307 VIKSI 311 (313)
Q Consensus 307 i~~~~ 311 (313)
+|++.
T Consensus 173 vId~~ 177 (203)
T 1uf9_A 173 VLENT 177 (203)
T ss_dssp EECCS
T ss_pred EEECC
Confidence 88765
No 253
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.11 E-value=0.00031 Score=58.65 Aligned_cols=28 Identities=29% Similarity=0.568 Sum_probs=25.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++.+++|+|+.||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999998774
No 254
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.11 E-value=0.00033 Score=58.20 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=23.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.+++|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999988774
No 255
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.11 E-value=0.00015 Score=60.64 Aligned_cols=30 Identities=27% Similarity=0.505 Sum_probs=26.4
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+..+.+++|+|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445678999999999999999999998874
No 256
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.10 E-value=0.00023 Score=73.15 Aligned_cols=32 Identities=34% Similarity=0.490 Sum_probs=29.2
Q ss_pred ceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 101 s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|.+.+|+.+.|+||||+|||||+++|++.+.
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 34688999999999999999999999999875
No 257
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.09 E-value=0.0003 Score=59.20 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998865
No 258
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.09 E-value=0.00032 Score=59.15 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=22.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|.|++||||||+.+.|++.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999999874
No 259
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.09 E-value=0.00032 Score=58.23 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=23.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++|+|++|||||||+..|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4799999999999999999999885
No 260
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.08 E-value=0.00056 Score=63.08 Aligned_cols=25 Identities=32% Similarity=0.721 Sum_probs=23.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999999874
No 261
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.07 E-value=0.00035 Score=59.10 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=25.8
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+|.+++|.|+.||||||+.+.|+..+.
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999998764
No 262
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.07 E-value=0.0002 Score=59.34 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999864
No 263
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.06 E-value=0.00032 Score=57.61 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~G 129 (313)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 264
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.03 E-value=0.00034 Score=59.03 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q 021380 110 VGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 110 v~IiGpNGsGKSTLlk~L~Gll 131 (313)
+.|+||+|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999998776
No 265
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.03 E-value=0.00039 Score=62.61 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=25.1
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
...|.++.|+||+||||||+.+.|+..+
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999998866
No 266
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.02 E-value=0.00041 Score=58.76 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=25.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|.+++|.|+.||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999998774
No 267
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.00 E-value=0.00037 Score=62.93 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=28.1
Q ss_pred ceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 101 s~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.+.++..+.|.||+|+|||||++.|++.+.
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 34567888999999999999999999999874
No 268
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.99 E-value=0.0003 Score=58.07 Aligned_cols=27 Identities=30% Similarity=0.466 Sum_probs=19.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.++.|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567999999999999999999988764
No 269
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.94 E-value=0.00056 Score=58.53 Aligned_cols=27 Identities=41% Similarity=0.596 Sum_probs=24.6
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|-+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999998875
No 270
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.94 E-value=0.00035 Score=65.13 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=27.2
Q ss_pred CeE-EEEECCCCCCHHHHHHHHHHHhccc--------CCCCceeeeCC
Q 021380 107 KHI-VGLAGPPGAGKSTLAAEVVRRINKI--------WPQKASSFDSQ 145 (313)
Q Consensus 107 Gei-v~IiGpNGsGKSTLlk~L~Gll~~~--------~p~~G~i~~~~ 145 (313)
|-. ++|+|++|||||||++.|+|..... -+..|.+.++|
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g 225 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN 225 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC
Confidence 444 9999999999999999999875300 03456676665
No 271
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.93 E-value=0.00049 Score=57.06 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=22.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.|.|+.||||||+.+.|+..+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999885
No 272
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.93 E-value=0.00054 Score=57.16 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|.|+.||||||+++.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999884
No 273
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.93 E-value=0.00039 Score=60.33 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-.++|+|++|+|||||++.|+|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCc
Confidence 3689999999999999999999765
No 274
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.88 E-value=0.00072 Score=56.94 Aligned_cols=28 Identities=39% Similarity=0.618 Sum_probs=24.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+.+++|+|+.||||||+.+.|+..+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567899999999999999999998774
No 275
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.87 E-value=0.00076 Score=62.76 Aligned_cols=39 Identities=26% Similarity=0.278 Sum_probs=28.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc--------ccCCCCceeeeCC
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN--------KIWPQKASSFDSQ 145 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~--------~~~p~~G~i~~~~ 145 (313)
|..++|+|.+|+|||||++.|+|--. ...|+.|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45799999999999999999999320 0115667666644
No 276
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.82 E-value=0.00063 Score=58.56 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=23.7
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++.+++|+|+.||||||+.+.|+..+.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999998764
No 277
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.82 E-value=0.00078 Score=56.70 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=24.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+..+++|.|+.||||||+.+.|+..+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999987764
No 278
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.82 E-value=0.00048 Score=61.15 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999975
No 279
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.81 E-value=0.00076 Score=57.35 Aligned_cols=24 Identities=38% Similarity=0.638 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988774
No 280
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.81 E-value=0.00083 Score=54.80 Aligned_cols=26 Identities=35% Similarity=0.386 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-++++|.|+.||||||+.+.|+..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998875
No 281
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.80 E-value=0.00078 Score=55.90 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999873
No 282
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.80 E-value=0.0009 Score=55.40 Aligned_cols=26 Identities=38% Similarity=0.641 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.+++|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998774
No 283
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.79 E-value=0.0007 Score=55.27 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=22.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998874
No 284
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.79 E-value=0.00065 Score=56.27 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998875
No 285
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.78 E-value=0.0007 Score=58.02 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998874
No 286
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.76 E-value=0.00094 Score=54.28 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998774
No 287
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.71 E-value=0.0011 Score=58.49 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=24.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999998763
No 288
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.71 E-value=0.00091 Score=56.93 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|+|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987664
No 289
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.71 E-value=0.0019 Score=59.10 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++|+||+|||||||.+.|+..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999999874
No 290
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.71 E-value=0.0012 Score=57.72 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=25.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++-+++|.||.||||||+.+.|+..+.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999998774
No 291
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.67 E-value=0.0019 Score=58.90 Aligned_cols=26 Identities=27% Similarity=0.661 Sum_probs=22.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.+++|+||+|||||||...|+..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45899999999999999999987663
No 292
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.0011 Score=54.99 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.-.++|+|+.|+|||||++.|.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999999864
No 293
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.64 E-value=0.00064 Score=65.26 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=31.4
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++.+ +.+.+|+.++|+|++|+|||||++.|+....
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 55555 6778999999999999999999999998875
No 294
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.63 E-value=0.0017 Score=54.49 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=23.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+.|.||+|+|||||++.|+..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 6789999999999999999999885
No 295
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.59 E-value=0.00082 Score=58.27 Aligned_cols=28 Identities=21% Similarity=0.431 Sum_probs=23.7
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.+..|+.++|+||+||||||++..+...
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence 4567999999999999999998877543
No 296
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.58 E-value=0.0013 Score=52.67 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998853
No 297
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.57 E-value=0.0034 Score=57.03 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=23.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.+++|+||+|||||||...|+..+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 46899999999999999999998764
No 298
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.57 E-value=0.0014 Score=52.21 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998854
No 299
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.57 E-value=0.0017 Score=56.06 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=27.2
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-.+.+..++.|+||.||||+|..+.|+..+.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3456778999999999999999999998875
No 300
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.56 E-value=0.0014 Score=56.32 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998774
No 301
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.56 E-value=0.0027 Score=58.44 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=23.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.++.|+||.|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 467899999999999999999998664
No 302
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.53 E-value=0.0016 Score=60.01 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=26.8
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-+++|+++.|.||+|+|||||+..++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999999999863
No 303
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.53 E-value=0.0014 Score=56.01 Aligned_cols=27 Identities=33% Similarity=0.486 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|-++.|+|+.||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998874
No 304
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.53 E-value=0.0014 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
No 305
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.52 E-value=0.0016 Score=52.02 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 306
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.51 E-value=0.0018 Score=55.35 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=24.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+..+.|.||+|+|||||++.++..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999999885
No 307
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.50 E-value=0.0045 Score=59.01 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=31.9
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.|+.+.--+.+|+++.|.|++|+|||||+..++....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5666665689999999999999999999998888764
No 308
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.50 E-value=0.0016 Score=51.99 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998753
No 309
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.49 E-value=0.0017 Score=52.19 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998864
No 310
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.49 E-value=0.0012 Score=59.03 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|++|+|||||++.|+|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 468999999999999999999853
No 311
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.48 E-value=0.0016 Score=52.88 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=23.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.+.-.++|+|+.|+|||||++.+.+-.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 455689999999999999999998743
No 312
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.48 E-value=0.0017 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 313
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.47 E-value=0.0017 Score=52.75 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998854
No 314
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.45 E-value=0.0019 Score=59.54 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=24.6
Q ss_pred CCe--EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKH--IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Ge--iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+. .+.|.||+|+|||||++.+++.+.
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 456 899999999999999999999986
No 315
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.45 E-value=0.0018 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 316
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.45 E-value=0.0018 Score=51.79 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 317
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.45 E-value=0.0015 Score=60.00 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=25.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+..+.|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999999886
No 318
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.44 E-value=0.00076 Score=57.27 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999998875
No 319
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.43 E-value=0.0019 Score=52.40 Aligned_cols=23 Identities=39% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 320
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.43 E-value=0.0016 Score=52.37 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=20.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|+.|+|||||++.+.+-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999874
No 321
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.43 E-value=0.0017 Score=52.15 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 322
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.42 E-value=0.0023 Score=54.98 Aligned_cols=28 Identities=39% Similarity=0.510 Sum_probs=25.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+|.++.|.|+.||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999885
No 323
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.42 E-value=0.0017 Score=55.32 Aligned_cols=26 Identities=38% Similarity=0.595 Sum_probs=23.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.+++|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998764
No 324
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.42 E-value=0.0018 Score=56.31 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999999885
No 325
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.41 E-value=0.0015 Score=52.85 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998754
No 326
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.41 E-value=0.0018 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 479999999999999999998764
No 327
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.40 E-value=0.0018 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|+.|+|||||++.+.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999886
No 328
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.40 E-value=0.0027 Score=57.90 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=26.7
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-+++|+++.|.||+|+|||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58899999999999999999999998764
No 329
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.40 E-value=0.0045 Score=58.25 Aligned_cols=25 Identities=32% Similarity=0.682 Sum_probs=22.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+++|+||+|||||||.+.|+..+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999998874
No 330
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.39 E-value=0.0024 Score=55.15 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.7
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++.++.|+|+.||||||+.+.|+..+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3457899999999999999999998875
No 331
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.38 E-value=0.0025 Score=51.23 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999774
No 332
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.36 E-value=0.0022 Score=51.40 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 333
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.36 E-value=0.0022 Score=52.53 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.|.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998754
No 334
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.35 E-value=0.0022 Score=53.13 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998854
No 335
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.35 E-value=0.0017 Score=52.31 Aligned_cols=23 Identities=43% Similarity=0.408 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999997543
No 336
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.35 E-value=0.0013 Score=59.85 Aligned_cols=36 Identities=19% Similarity=0.422 Sum_probs=26.6
Q ss_pred ccccceeecCC--eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 97 TSALASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 97 L~~is~~i~~G--eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.+...+..| ..+.|.||+|+||||+++.|++.+.
T Consensus 46 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 46 VTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33333334444 3389999999999999999999874
No 337
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.35 E-value=0.0023 Score=57.10 Aligned_cols=27 Identities=37% Similarity=0.500 Sum_probs=24.3
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.-+.|.||+|+|||||++.|++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999874
No 338
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.34 E-value=0.0022 Score=52.90 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.-.++|+|+.|+|||||++.|.+..
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 3469999999999999999999863
No 339
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.33 E-value=0.0023 Score=52.54 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 340
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.33 E-value=0.0024 Score=55.86 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=25.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|.++.|.|++||||||+++.|...+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999999885
No 341
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.32 E-value=0.0012 Score=53.03 Aligned_cols=23 Identities=43% Similarity=0.403 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999997644
No 342
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.32 E-value=0.0016 Score=53.92 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
--.++|+|+.|+|||||++.|.+.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999875
No 343
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.31 E-value=0.0023 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++|+|+.|+|||||++.+.|...
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 689999999999999999998764
No 344
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.30 E-value=0.0016 Score=53.58 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.|.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 378999999999999999998754
No 345
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.30 E-value=0.0025 Score=50.97 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 346
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.30 E-value=0.0046 Score=52.39 Aligned_cols=26 Identities=31% Similarity=0.532 Sum_probs=23.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
--+++|+|+.|+|||||++.|++.+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999998764
No 347
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.29 E-value=0.0019 Score=56.51 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.-.|+|+|.+|+|||||++.|.|.-
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478999999999999999999865
No 348
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.29 E-value=0.0025 Score=52.57 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.|.+-.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
No 349
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.29 E-value=0.0032 Score=53.60 Aligned_cols=34 Identities=29% Similarity=0.380 Sum_probs=26.5
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++..-+.+ .|..+.|+||+|+|||||...|+..
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 455544454 5788999999999999999888653
No 350
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.28 E-value=0.0015 Score=53.86 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
+.-.++|+|++|+|||||++.+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999875
No 351
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.28 E-value=0.0025 Score=52.71 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=19.9
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|++|+|||||++.+.+-
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999877664
No 352
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.28 E-value=0.0025 Score=51.94 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 468999999999999999998753
No 353
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.28 E-value=0.0015 Score=60.39 Aligned_cols=27 Identities=33% Similarity=0.322 Sum_probs=23.3
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
...-.++|+|+||+|||||++.|+|..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998754
No 354
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.27 E-value=0.0026 Score=51.50 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
No 355
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.25 E-value=0.0024 Score=51.69 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998743
No 356
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.25 E-value=0.0027 Score=51.61 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999998754
No 357
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.24 E-value=0.0016 Score=52.89 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.|.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999764
No 358
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.24 E-value=0.0029 Score=54.34 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=25.1
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|.++.|-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999999885
No 359
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.23 E-value=0.0035 Score=51.10 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=24.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999875
No 360
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.22 E-value=0.002 Score=58.65 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=29.4
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHH
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
.+++..+++ .|.-++|.|++|+|||||+..|.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 677877777 688999999999999999998877
No 361
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.21 E-value=0.0025 Score=51.68 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhCc
Confidence 368999999999999999998643
No 362
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.21 E-value=0.0018 Score=53.12 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998753
No 363
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.21 E-value=0.0029 Score=54.91 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|.+++|.|+.||||||+++.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998874
No 364
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.21 E-value=0.003 Score=51.40 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 365
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.20 E-value=0.0029 Score=52.78 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998864
No 366
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.20 E-value=0.0028 Score=53.54 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.|.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998865
No 367
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.19 E-value=0.0026 Score=56.92 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999999999998743
No 368
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.19 E-value=0.0029 Score=56.02 Aligned_cols=29 Identities=38% Similarity=0.576 Sum_probs=25.3
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+..+.-+.|.||+|+|||||++.|+..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35566799999999999999999999875
No 369
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.19 E-value=0.0026 Score=59.32 Aligned_cols=23 Identities=43% Similarity=0.631 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|++|+|||||++.|++..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999974
No 370
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.18 E-value=0.0038 Score=54.05 Aligned_cols=28 Identities=18% Similarity=0.293 Sum_probs=25.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999999885
No 371
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.18 E-value=0.0027 Score=52.21 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998853
No 372
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.18 E-value=0.0027 Score=51.93 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
No 373
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.18 E-value=0.003 Score=52.61 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998753
No 374
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.18 E-value=0.0015 Score=67.19 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=30.1
Q ss_pred cceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 100 is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++.+.++..+.|.||+|+|||||++.|++.+.
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 366778999999999999999999999999986
No 375
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.17 E-value=0.0031 Score=51.51 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998753
No 376
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.16 E-value=0.0035 Score=53.99 Aligned_cols=28 Identities=14% Similarity=0.296 Sum_probs=26.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|.++.|.|+.||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999999986
No 377
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.16 E-value=0.0036 Score=50.96 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.-.++|+|+.|+|||||++.+.+-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999864
No 378
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.15 E-value=0.0032 Score=51.97 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998854
No 379
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=96.15 E-value=0.0024 Score=57.75 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+++|+|.+|+|||||++.|.|.-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999853
No 380
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.15 E-value=0.0032 Score=51.97 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999999854
No 381
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.14 E-value=0.0047 Score=58.87 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=25.2
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999886
No 382
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.13 E-value=0.0035 Score=53.51 Aligned_cols=24 Identities=42% Similarity=0.707 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.|+||.||||+|..+.|+..+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 578999999999999999999875
No 383
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.13 E-value=0.0028 Score=57.50 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+..+.|.||+|+|||||++.|++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 345789999999999999999999885
No 384
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.12 E-value=0.0031 Score=52.34 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 385
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=96.12 E-value=0.0024 Score=56.38 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|..|+|||||++.|+|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 386
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.12 E-value=0.0034 Score=52.40 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|++|+|||||++.+.|..
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~~ 30 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGVH 30 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 69999999999999999999853
No 387
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.11 E-value=0.0034 Score=51.16 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|+.|+|||||++.+.+-
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999864
No 388
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.10 E-value=0.0032 Score=52.13 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|+.|+|||||++.+.+-
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 47999999999999999999884
No 389
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.09 E-value=0.0031 Score=59.68 Aligned_cols=30 Identities=33% Similarity=0.313 Sum_probs=25.4
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+.-..+.++.|+|++||||||+.+.|+..+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 444567899999999999999999987655
No 390
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=96.08 E-value=0.0028 Score=57.45 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=21.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-+|+|+|..|+|||||++.|.|.-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999853
No 391
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.07 E-value=0.0024 Score=52.12 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=21.6
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
.+.-.++|+|++|+|||||++.+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3556899999999999999998874
No 392
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.07 E-value=0.0016 Score=57.29 Aligned_cols=34 Identities=35% Similarity=0.551 Sum_probs=26.9
Q ss_pred ccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 97 L~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.++.+...+| +.|.||+|+|||||++.|++.+.
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 34444555566 77999999999999999999875
No 393
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.06 E-value=0.0034 Score=51.18 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 394
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.06 E-value=0.0034 Score=51.97 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999999865
No 395
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.06 E-value=0.0033 Score=52.51 Aligned_cols=26 Identities=27% Similarity=0.221 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+.-.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 34579999999999999999999864
No 396
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.05 E-value=0.0039 Score=51.44 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998743
No 397
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.05 E-value=0.003 Score=53.14 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=24.7
Q ss_pred cccceeecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 98 ~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++.|.-...-.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cccccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence 4444444444579999999999999999998843
No 398
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.05 E-value=0.0027 Score=55.58 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.-.|+|+|+.|+|||||++.|.|.-
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998754
No 399
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.05 E-value=0.0039 Score=51.60 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 400
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.02 E-value=0.0036 Score=52.79 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999988754
No 401
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.02 E-value=0.004 Score=51.41 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 3478999999999999999998753
No 402
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.01 E-value=0.0041 Score=51.54 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 479999999999999999998853
No 403
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.01 E-value=0.0031 Score=60.06 Aligned_cols=31 Identities=39% Similarity=0.564 Sum_probs=26.1
Q ss_pred eeecCC--eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 102 SNVNVK--HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 102 ~~i~~G--eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
|.+.++ .+++|+|++|+||||++..|++.+.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 444433 5999999999999999999999885
No 404
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=96.00 E-value=0.0033 Score=55.49 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.|+|..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999854
No 405
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.00 E-value=0.0045 Score=51.58 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.-.++|+|+.|+|||||++.+.+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 4578999999999999999998753
No 406
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=96.00 E-value=0.0033 Score=51.57 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=21.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.+.-.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999864
No 407
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.99 E-value=0.0042 Score=51.10 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 479999999999999999998854
No 408
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.99 E-value=0.0043 Score=51.54 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.-.++|+|+.|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999875
No 409
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.95 E-value=0.004 Score=52.12 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 410
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.95 E-value=0.0021 Score=53.81 Aligned_cols=23 Identities=43% Similarity=0.434 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|++|+|||||++.++|.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 37899999999999999999764
No 411
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.93 E-value=0.0051 Score=57.03 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=26.6
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+++|.++.|.|++|+|||||+..++....
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999988887653
No 412
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.93 E-value=0.0038 Score=52.03 Aligned_cols=23 Identities=13% Similarity=0.197 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998753
No 413
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.92 E-value=0.0046 Score=51.79 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
..-.++|+|+.|+|||||++.+.+-.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34579999999999999999998753
No 414
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.91 E-value=0.0049 Score=50.96 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.0
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 478999999999999999888753
No 415
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.91 E-value=0.0045 Score=50.43 Aligned_cols=27 Identities=30% Similarity=0.449 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 355678999999999999999999875
No 416
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.90 E-value=0.0043 Score=52.41 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999853
No 417
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.89 E-value=0.004 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.2
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998753
No 418
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.88 E-value=0.0062 Score=52.97 Aligned_cols=28 Identities=39% Similarity=0.557 Sum_probs=23.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
....-+.|.||.|+|||||++.|+..+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3345588999999999999999999875
No 419
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.87 E-value=0.0036 Score=55.65 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=21.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|..|+|||||++.|+|..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999864
No 420
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.86 E-value=0.0023 Score=56.36 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=24.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.++.+|+|.|+.||||||+++.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999987763
No 421
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.86 E-value=0.0051 Score=51.77 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=21.3
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998754
No 422
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.84 E-value=0.0046 Score=58.94 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.-+.|.||+|+|||||++.|++.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999884
No 423
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.84 E-value=0.0064 Score=51.80 Aligned_cols=26 Identities=35% Similarity=0.667 Sum_probs=23.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
|.+|+|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999999885
No 424
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.82 E-value=0.0038 Score=56.15 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.7
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.|+|.-
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 379999999999999999999863
No 425
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.82 E-value=0.0049 Score=50.73 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.8
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4557999999999999999999853
No 426
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.81 E-value=0.0038 Score=52.28 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 427
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.80 E-value=0.0036 Score=51.34 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.-.++|+|+.|+|||||++.+.+-
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999874
No 428
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.80 E-value=0.0051 Score=55.81 Aligned_cols=28 Identities=18% Similarity=0.363 Sum_probs=25.7
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-+++|+++.|.|++|+|||||+..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999988865
No 429
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.77 E-value=0.0031 Score=55.93 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|.+|+|||||++.|.|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998764
No 430
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.75 E-value=0.0054 Score=51.26 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999998753
No 431
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.75 E-value=0.0054 Score=52.18 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
--+++|+|..|+|||||++.+++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999988763
No 432
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.75 E-value=0.0041 Score=53.24 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.-.++|+|+.|+|||||++.+.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999875
No 433
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.73 E-value=0.0036 Score=52.00 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999997643
No 434
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.72 E-value=0.002 Score=54.67 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.-.++|+|+.|+|||||++.|.|..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4479999999999999999998853
No 435
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.71 E-value=0.0028 Score=52.32 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.-.++|+|+.|+|||||++.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998765
No 436
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.70 E-value=0.005 Score=51.96 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 437
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.006 Score=50.40 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 438
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.70 E-value=0.0036 Score=51.13 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=9.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEEECCCCC-------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999988653
No 439
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.69 E-value=0.0039 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999998864
No 440
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.66 E-value=0.0052 Score=51.09 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=20.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4457999999999999999998854
No 441
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.64 E-value=0.0077 Score=52.37 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=22.8
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.-.+||+|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998775
No 442
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.63 E-value=0.0049 Score=52.19 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|+.|+|||||++.+.+-
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 443
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.62 E-value=0.0051 Score=51.22 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.1
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|+.|+|||||++.+.+..
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcC
Confidence 378999999999999999888754
No 444
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.61 E-value=0.012 Score=54.40 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=25.0
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.-+++|+|+.|+|||||++.|++.+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999998874
No 445
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.60 E-value=0.0068 Score=50.74 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 68999999999999999998743
No 446
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.59 E-value=0.0094 Score=49.76 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=20.8
Q ss_pred CCeEEEEECCCCCCHHHHH-HHHHHHh
Q 021380 106 VKHIVGLAGPPGAGKSTLA-AEVVRRI 131 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLl-k~L~Gll 131 (313)
+|.++.|.||.|+||||++ +++..+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999997 4444443
No 447
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.56 E-value=0.0057 Score=53.83 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|..|+|||||++.|.|.-
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999854
No 448
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.56 E-value=0.012 Score=50.56 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=23.0
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHH
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVV 128 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~ 128 (313)
-+++|+++.|.|++|+|||||+--++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999999986554
No 449
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.52 E-value=0.0084 Score=51.01 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|+.|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998853
No 450
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.51 E-value=0.0075 Score=50.61 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.-.++|+|+.|+|||||++.+.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 357899999999999999998864
No 451
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.51 E-value=0.0055 Score=54.56 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.8
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++|+|..|+|||||++.|+|.-
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 479999999999999999999864
No 452
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.51 E-value=0.0064 Score=51.92 Aligned_cols=23 Identities=43% Similarity=0.384 Sum_probs=20.5
Q ss_pred eEEEEECCCCCCHHHHHHHHHHH
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
-.++|+|.+|+|||||++.+.|.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999864
No 453
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.48 E-value=0.0055 Score=50.96 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=21.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
.+.-.++|+|+.|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999998864
No 454
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.45 E-value=0.0064 Score=53.71 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-.++++|+.|+|||||++.|.|..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998754
No 455
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.45 E-value=0.0089 Score=50.66 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.2
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.-.++|+|+.|+|||||++.+.+-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 347899999999999999999875
No 456
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.44 E-value=0.0065 Score=53.79 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.6
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..++|+|.+|+|||||++.|.|...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5899999999999999999998654
No 457
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.38 E-value=0.0037 Score=52.07 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=5.4
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.-.++|+|+.|+|||||++.+.+.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999998876
No 458
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.36 E-value=0.0091 Score=50.11 Aligned_cols=25 Identities=12% Similarity=-0.020 Sum_probs=21.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998643
No 459
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.30 E-value=0.011 Score=49.32 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=21.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.|.||.|+|||||++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 389999999999999999998763
No 460
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.30 E-value=0.0034 Score=60.00 Aligned_cols=33 Identities=42% Similarity=0.702 Sum_probs=26.3
Q ss_pred cceeecCCeE--EEEECCCCCCHHHHHHHHHHHhc
Q 021380 100 LASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 100 is~~i~~Gei--v~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.-.+..|.+ +.|.||+|+|||||++.|+..+.
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3344445554 89999999999999999999875
No 461
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.29 E-value=0.011 Score=49.25 Aligned_cols=32 Identities=25% Similarity=0.163 Sum_probs=24.2
Q ss_pred ccccceeecCCeEEEEECCCCCCHHHHHHHHHH
Q 021380 97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 97 L~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
++..-+.+ .|.-+.|.|++|+|||||...|..
T Consensus 7 lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 7 WHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34333333 478899999999999999887754
No 462
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.28 E-value=0.012 Score=52.60 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=24.3
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+.-+.|.||.|+|||||++.|+..+.
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455789999999999999999999884
No 463
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.27 E-value=0.011 Score=47.03 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=23.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
..+.-+.|.||.|+|||++++.|....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 345568899999999999999998765
No 464
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.26 E-value=0.0093 Score=54.64 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=24.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999874
No 465
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.24 E-value=0.0034 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHH
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.++|+|+.|+|||||++.|.+.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999998854
No 466
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.24 E-value=0.012 Score=52.69 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=23.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+....+.|.||.|+|||+|++.|+..+.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4445678889999999999999999875
No 467
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=95.19 E-value=0.013 Score=54.81 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=30.0
Q ss_pred ccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 99 ~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
|.=+.|.+|+..+|+|+.|+|||||+..|+....
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~ 200 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA 200 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence 4446789999999999999999999999988764
No 468
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.16 E-value=0.0082 Score=61.30 Aligned_cols=63 Identities=13% Similarity=0.008 Sum_probs=41.0
Q ss_pred ccCCCCCccCCCcchhhhhcccCccEEEEcCccc-ccCh----hhHHHHHHhhcC--eE-E-EEcChHHHHH
Q 021380 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL-FLDG----GVWKDVSSMFDE--KW-F-IEVDLDTAMQ 266 (313)
Q Consensus 204 ~~~~~LSgGekqRv~la~al~~~a~~li~d~~~l-lLDE----~~~~~l~~l~~~--~i-~-vtHd~~~~~~ 266 (313)
..+..++.|+.+|..++..++.+.+++++||... .+|. ..+..+...... +| + +|||.+.+..
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 3455778999999888777788888899999875 6664 233333333322 23 4 4898765543
No 469
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.14 E-value=0.012 Score=50.32 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=25.6
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++.-.+.|.||.|+||||++..|+..+.
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 66666799999999999999999999884
No 470
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.07 E-value=0.0065 Score=58.04 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.|+|+|.+|+|||||++.|+|..
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999998853
No 471
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.00 E-value=0.016 Score=57.04 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=25.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..|.++.|.|.+||||||+.+.|...+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3577999999999999999999998874
No 472
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.99 E-value=0.015 Score=56.38 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=26.5
Q ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 104 i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+.|.++.|+|.+||||||+.+.|+..+.
T Consensus 392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 392 PKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999995
No 473
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.98 E-value=0.016 Score=57.56 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=24.4
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+|.+|.|+|.+||||||+.+.|+..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999987
No 474
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.96 E-value=0.017 Score=52.57 Aligned_cols=27 Identities=41% Similarity=0.491 Sum_probs=23.8
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++.-+.|.||.|+|||||++.++..+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 445678899999999999999999987
No 475
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.95 E-value=0.013 Score=52.33 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.0
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.+-.++|+|.+|+|||||++.|.|..
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 45579999999999999999999864
No 476
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.92 E-value=0.017 Score=53.78 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=25.5
Q ss_pred eecCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 103 ~i~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
-+++|.++.|.|++|+|||||+..++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 47899999999999999999998777654
No 477
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=94.91 E-value=0.011 Score=48.58 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.9
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVR 129 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~G 129 (313)
+.-.++|+|+.|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 456799999999999999998854
No 478
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.91 E-value=0.041 Score=47.76 Aligned_cols=27 Identities=37% Similarity=0.527 Sum_probs=23.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.+.-++.++|..|+|||||+..|+..+
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999877
No 479
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.90 E-value=0.035 Score=52.74 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=24.9
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+..+++++|++|+||||+.-.|+..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~ 125 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLR 125 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999998885
No 480
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=94.86 E-value=0.017 Score=51.37 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+.-+.|.||.|+|||||++.|+..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45678999999999999999999885
No 481
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.84 E-value=0.011 Score=50.07 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.7
Q ss_pred eEEEEECCCCCCHHHHHHH-HHHHh
Q 021380 108 HIVGLAGPPGAGKSTLAAE-VVRRI 131 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~-L~Gll 131 (313)
-.++|+|+.|+|||||++. +.|..
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC
Confidence 3689999999999999998 66664
No 482
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.83 E-value=0.011 Score=56.67 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=24.6
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
..|-.++|+|+.|+|||||++.|+|...
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~ 249 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDR 249 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHB
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 4566799999999999999999999753
No 483
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.82 E-value=0.02 Score=55.52 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=23.7
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+..+++|+|++|+|||||+..|+..+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999998775
No 484
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.79 E-value=0.014 Score=52.62 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.3
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
+-.++|+|+.|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998775
No 485
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.77 E-value=0.016 Score=53.31 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=23.5
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
++.-+.|.||+|+||||+++.|+..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 345688999999999999999999874
No 486
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.74 E-value=0.021 Score=50.24 Aligned_cols=28 Identities=39% Similarity=0.539 Sum_probs=24.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
....-+.|.||.|+|||||++.|+....
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4455788999999999999999999864
No 487
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.73 E-value=0.019 Score=52.56 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=25.1
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.+|..+.|.||.|+|||||++.++..+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999999985
No 488
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.66 E-value=0.021 Score=52.36 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+..+.|.||.|+|||||++.++..+.
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 55899999999999999999998874
No 489
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.65 E-value=0.027 Score=53.99 Aligned_cols=33 Identities=27% Similarity=0.449 Sum_probs=28.8
Q ss_pred cceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 100 is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
.=+.+.+|+.++|.|+.|+|||||+..|+....
T Consensus 146 ~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~ 178 (482)
T 2ck3_D 146 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVA 178 (482)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cccccccCCeeeeecCCCCChHHHHHHHHHhhH
Confidence 345789999999999999999999999988753
No 490
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=94.65 E-value=0.018 Score=52.55 Aligned_cols=29 Identities=17% Similarity=0.228 Sum_probs=25.3
Q ss_pred eeecCCeEEEEECCCCCCHHHHHHHHHHH
Q 021380 102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 102 ~~i~~Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
--+.+|.++.|.||.|+|||||+..++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 35778888999999999999999998764
No 491
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.65 E-value=0.0058 Score=51.06 Aligned_cols=24 Identities=17% Similarity=0.152 Sum_probs=20.6
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRR 130 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gl 130 (313)
.-.++|+|+.|+|||||++.+.+-
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 347899999999999999888753
No 492
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=94.62 E-value=0.014 Score=54.92 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHh
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll 131 (313)
.++|+|.+++|||||++.|+|.-
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999864
No 493
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.62 E-value=0.024 Score=51.30 Aligned_cols=25 Identities=32% Similarity=0.365 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Q 021380 107 KHIVGLAGPPGAGKSTLAAEVVRRI 131 (313)
Q Consensus 107 Geiv~IiGpNGsGKSTLlk~L~Gll 131 (313)
+.-+.|.||.|+|||+|++.|+..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999876
No 494
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.61 E-value=0.024 Score=54.30 Aligned_cols=28 Identities=25% Similarity=0.544 Sum_probs=23.5
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
....++.++|.+||||||+.+.|+..+.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999987753
No 495
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.61 E-value=0.024 Score=55.11 Aligned_cols=28 Identities=25% Similarity=0.535 Sum_probs=24.2
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
....+|.++|.+||||||+.+.|+..+.
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999988764
No 496
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.61 E-value=0.023 Score=52.31 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=24.4
Q ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 105 ~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
....-+.|.||.|+|||||++.|+..+.
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 4556799999999999999999998764
No 497
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.57 E-value=0.0053 Score=55.70 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=28.9
Q ss_pred cccccceeecCCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 96 iL~~is~~i~~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+++.+...+..|.-+.|.||.|+|||||++.|+..+.
T Consensus 35 ~~~~l~~~l~~~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 35 MINRLLIGICTGGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 3344444445567899999999999999999999875
No 498
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.57 E-value=0.025 Score=47.71 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Q 021380 109 IVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 109 iv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+|+|=|+-||||||.++.|...+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578889999999999999999885
No 499
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.51 E-value=0.023 Score=48.06 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=23.4
Q ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 108 HIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 108 eiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
-+|+|.|+.||||||+.+.|+..+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999999885
No 500
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.50 E-value=0.027 Score=51.05 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhc
Q 021380 106 VKHIVGLAGPPGAGKSTLAAEVVRRIN 132 (313)
Q Consensus 106 ~Geiv~IiGpNGsGKSTLlk~L~Gll~ 132 (313)
+..-+.|.||.|+|||||++.|+..+.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 445689999999999999999999875
Done!