Query 021383
Match_columns 313
No_of_seqs 122 out of 1045
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 02:31:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2728 Uncharacterized conser 100.0 2.6E-70 5.7E-75 495.6 23.0 298 12-312 1-301 (302)
2 PRK13982 bifunctional SbtC-lik 100.0 1.5E-54 3.3E-59 431.7 26.4 230 12-303 225-469 (475)
3 PF04127 DFP: DNA / pantothena 100.0 1.3E-53 2.9E-58 379.7 16.4 174 44-273 4-185 (185)
4 PRK05579 bifunctional phosphop 100.0 1.4E-50 2.9E-55 397.7 25.5 232 11-304 159-397 (399)
5 PRK09620 hypothetical protein; 100.0 1.7E-50 3.7E-55 370.7 23.4 206 44-304 4-223 (229)
6 TIGR00521 coaBC_dfp phosphopan 100.0 8.7E-50 1.9E-54 390.9 25.4 228 14-301 158-390 (390)
7 PRK06732 phosphopantothenate-- 100.0 1.5E-47 3.2E-52 351.0 23.0 203 44-302 1-226 (229)
8 TIGR02114 coaB_strep phosphopa 100.0 5E-45 1.1E-49 333.9 22.0 201 45-302 1-225 (227)
9 COG0452 Dfp Phosphopantothenoy 100.0 2.2E-41 4.8E-46 331.8 21.8 229 14-304 157-391 (392)
10 PRK05854 short chain dehydroge 97.3 0.0018 4E-08 61.5 9.9 37 38-94 11-47 (313)
11 PRK06138 short chain dehydroge 97.2 0.004 8.8E-08 56.0 10.8 36 39-94 3-38 (252)
12 PRK06935 2-deoxy-D-gluconate 3 97.2 0.0029 6.2E-08 57.7 9.9 45 30-94 4-48 (258)
13 PRK07523 gluconate 5-dehydroge 97.1 0.0051 1.1E-07 55.8 11.2 36 39-94 8-43 (255)
14 PRK08416 7-alpha-hydroxysteroi 97.1 0.0029 6.3E-08 57.9 9.5 37 38-94 5-41 (260)
15 PRK07063 short chain dehydroge 97.1 0.005 1.1E-07 56.0 11.0 36 39-94 5-40 (260)
16 PRK06194 hypothetical protein; 97.1 0.0052 1.1E-07 56.8 11.2 33 44-94 7-39 (287)
17 PRK05876 short chain dehydroge 97.1 0.006 1.3E-07 56.8 11.5 36 39-94 4-39 (275)
18 PRK05867 short chain dehydroge 97.1 0.006 1.3E-07 55.4 11.2 36 39-94 7-42 (253)
19 PRK12937 short chain dehydroge 97.1 0.0058 1.3E-07 54.7 10.9 33 44-94 6-38 (245)
20 PRK08213 gluconate 5-dehydroge 97.1 0.0061 1.3E-07 55.4 11.1 36 39-94 10-45 (259)
21 PRK07774 short chain dehydroge 97.1 0.0059 1.3E-07 54.9 10.9 33 44-94 7-39 (250)
22 PRK07035 short chain dehydroge 97.1 0.0067 1.4E-07 54.9 11.2 36 39-94 6-41 (252)
23 PRK07814 short chain dehydroge 97.1 0.006 1.3E-07 55.9 11.0 36 39-94 8-43 (263)
24 PRK13394 3-hydroxybutyrate deh 97.1 0.0072 1.6E-07 54.7 11.4 33 44-94 8-40 (262)
25 PRK08628 short chain dehydroge 97.1 0.0051 1.1E-07 55.8 10.4 37 38-94 4-40 (258)
26 PRK12429 3-hydroxybutyrate deh 97.1 0.008 1.7E-07 54.1 11.5 33 44-94 5-37 (258)
27 PRK12826 3-ketoacyl-(acyl-carr 97.0 0.0077 1.7E-07 53.9 11.3 33 44-94 7-39 (251)
28 PRK07062 short chain dehydroge 97.0 0.0045 9.8E-08 56.5 9.9 37 38-94 5-41 (265)
29 PRK07097 gluconate 5-dehydroge 97.0 0.0072 1.6E-07 55.4 11.2 37 38-94 7-43 (265)
30 PRK07478 short chain dehydroge 97.0 0.0068 1.5E-07 55.0 11.0 33 44-94 7-39 (254)
31 PRK07984 enoyl-(acyl carrier p 97.0 0.0059 1.3E-07 56.6 10.6 36 39-93 4-40 (262)
32 PRK08643 acetoin reductase; Va 97.0 0.0077 1.7E-07 54.6 11.0 33 44-94 3-35 (256)
33 PRK08690 enoyl-(acyl carrier p 97.0 0.0074 1.6E-07 55.6 10.6 37 39-93 4-40 (261)
34 PRK07533 enoyl-(acyl carrier p 97.0 0.0085 1.8E-07 55.0 10.9 38 38-94 7-45 (258)
35 PRK06197 short chain dehydroge 96.9 0.0054 1.2E-07 57.6 9.7 37 38-94 13-49 (306)
36 PRK07666 fabG 3-ketoacyl-(acyl 96.9 0.011 2.4E-07 52.9 11.4 33 44-94 8-40 (239)
37 PRK12823 benD 1,6-dihydroxycyc 96.9 0.0039 8.5E-08 56.6 8.5 36 39-94 6-41 (260)
38 PRK07370 enoyl-(acyl carrier p 96.9 0.0082 1.8E-07 55.2 10.7 36 39-93 4-40 (258)
39 PRK06114 short chain dehydroge 96.9 0.012 2.6E-07 53.6 11.6 36 39-94 6-41 (254)
40 PRK06398 aldose dehydrogenase; 96.9 0.0043 9.3E-08 56.9 8.7 36 39-94 4-39 (258)
41 PRK05557 fabG 3-ketoacyl-(acyl 96.9 0.013 2.7E-07 52.2 11.4 33 44-94 6-38 (248)
42 PRK06128 oxidoreductase; Provi 96.9 0.009 2E-07 56.1 11.0 36 39-94 53-88 (300)
43 PRK06603 enoyl-(acyl carrier p 96.9 0.0088 1.9E-07 55.0 10.7 36 39-93 6-42 (260)
44 PRK08589 short chain dehydroge 96.9 0.0091 2E-07 55.2 10.8 36 39-94 4-39 (272)
45 PRK12939 short chain dehydroge 96.9 0.013 2.8E-07 52.5 11.5 33 44-94 8-40 (250)
46 TIGR01832 kduD 2-deoxy-D-gluco 96.9 0.0082 1.8E-07 54.0 10.2 36 39-94 3-38 (248)
47 PRK08085 gluconate 5-dehydroge 96.9 0.011 2.4E-07 53.5 11.1 36 39-94 7-42 (254)
48 PRK08226 short chain dehydroge 96.9 0.011 2.3E-07 53.8 11.0 36 39-94 4-39 (263)
49 PRK12481 2-deoxy-D-gluconate 3 96.9 0.0074 1.6E-07 55.1 9.9 35 39-93 6-40 (251)
50 PRK08159 enoyl-(acyl carrier p 96.9 0.0092 2E-07 55.5 10.7 33 44-93 11-44 (272)
51 PRK06179 short chain dehydroge 96.9 0.0082 1.8E-07 54.9 10.2 33 44-94 5-37 (270)
52 PRK08251 short chain dehydroge 96.9 0.0075 1.6E-07 54.3 9.7 33 44-94 3-35 (248)
53 PRK07791 short chain dehydroge 96.9 0.011 2.4E-07 55.2 11.2 36 39-94 4-39 (286)
54 PRK06124 gluconate 5-dehydroge 96.9 0.014 3.1E-07 52.8 11.6 37 38-94 8-44 (256)
55 PRK12745 3-ketoacyl-(acyl-carr 96.9 0.011 2.4E-07 53.3 10.7 33 44-94 3-35 (256)
56 PRK12859 3-ketoacyl-(acyl-carr 96.8 0.016 3.4E-07 53.0 11.7 37 38-93 3-40 (256)
57 PRK12938 acetyacetyl-CoA reduc 96.8 0.012 2.7E-07 52.8 10.8 33 44-94 4-36 (246)
58 PRK07231 fabG 3-ketoacyl-(acyl 96.8 0.013 2.9E-07 52.5 10.9 33 44-94 6-38 (251)
59 PRK05653 fabG 3-ketoacyl-(acyl 96.8 0.016 3.4E-07 51.5 11.3 33 44-94 6-38 (246)
60 PRK06196 oxidoreductase; Provi 96.8 0.012 2.7E-07 55.6 11.2 37 38-94 23-59 (315)
61 PRK06079 enoyl-(acyl carrier p 96.8 0.0087 1.9E-07 54.7 9.8 37 39-94 5-42 (252)
62 PRK07109 short chain dehydroge 96.8 0.015 3.2E-07 56.0 11.8 37 38-94 5-41 (334)
63 PRK06139 short chain dehydroge 96.8 0.012 2.7E-07 56.7 11.2 36 39-94 5-40 (330)
64 PRK06200 2,3-dihydroxy-2,3-dih 96.8 0.011 2.3E-07 54.0 10.2 33 44-94 7-39 (263)
65 TIGR03325 BphB_TodD cis-2,3-di 96.8 0.0076 1.6E-07 55.1 9.1 33 44-94 6-38 (262)
66 COG4221 Short-chain alcohol de 96.8 0.0078 1.7E-07 56.1 9.1 35 44-96 7-41 (246)
67 PRK05866 short chain dehydroge 96.8 0.017 3.7E-07 54.4 11.6 33 44-94 41-73 (293)
68 PRK07890 short chain dehydroge 96.8 0.016 3.5E-07 52.3 11.1 33 44-94 6-38 (258)
69 PRK07576 short chain dehydroge 96.8 0.016 3.5E-07 53.3 11.2 36 39-94 7-42 (264)
70 PRK08063 enoyl-(acyl carrier p 96.8 0.018 3.8E-07 51.8 11.2 32 44-93 5-36 (250)
71 PRK06949 short chain dehydroge 96.8 0.018 3.8E-07 52.1 11.2 36 39-94 7-42 (258)
72 PRK08594 enoyl-(acyl carrier p 96.8 0.011 2.5E-07 54.3 10.1 37 39-94 5-42 (257)
73 PRK08936 glucose-1-dehydrogena 96.8 0.016 3.4E-07 52.9 11.0 37 38-94 4-40 (261)
74 PRK08265 short chain dehydroge 96.8 0.0096 2.1E-07 54.6 9.5 36 39-94 4-39 (261)
75 PF00106 adh_short: short chai 96.7 0.018 3.8E-07 48.5 10.5 34 44-95 1-34 (167)
76 PRK06841 short chain dehydroge 96.7 0.014 2.9E-07 52.8 10.4 36 39-94 13-48 (255)
77 TIGR01963 PHB_DH 3-hydroxybuty 96.7 0.017 3.7E-07 51.9 10.9 33 44-94 2-34 (255)
78 PRK12743 oxidoreductase; Provi 96.7 0.016 3.4E-07 52.8 10.7 33 44-94 3-35 (256)
79 KOG1205 Predicted dehydrogenas 96.7 0.0078 1.7E-07 57.4 8.9 36 39-94 10-45 (282)
80 PRK08303 short chain dehydroge 96.7 0.017 3.6E-07 55.0 11.2 36 39-94 6-41 (305)
81 PRK05872 short chain dehydroge 96.7 0.01 2.2E-07 55.8 9.6 37 38-94 6-42 (296)
82 PRK12746 short chain dehydroge 96.7 0.019 4.1E-07 51.8 11.1 35 39-93 4-38 (254)
83 PRK09242 tropinone reductase; 96.7 0.022 4.7E-07 51.7 11.5 36 39-94 7-42 (257)
84 PRK08339 short chain dehydroge 96.7 0.017 3.8E-07 53.2 11.0 37 38-94 5-41 (263)
85 PRK07024 short chain dehydroge 96.7 0.014 3E-07 53.2 10.2 33 44-94 3-35 (257)
86 PRK12827 short chain dehydroge 96.7 0.02 4.4E-07 51.1 11.1 33 44-94 7-39 (249)
87 PRK06500 short chain dehydroge 96.7 0.02 4.3E-07 51.4 10.9 33 44-94 7-39 (249)
88 PRK09072 short chain dehydroge 96.7 0.02 4.4E-07 52.2 11.1 33 44-94 6-38 (263)
89 PRK06172 short chain dehydroge 96.7 0.02 4.3E-07 51.8 10.9 36 39-94 5-40 (253)
90 PRK08862 short chain dehydroge 96.7 0.019 4.1E-07 52.1 10.8 36 39-94 3-38 (227)
91 PRK08277 D-mannonate oxidoredu 96.7 0.021 4.5E-07 52.6 11.2 36 39-94 8-43 (278)
92 PRK09186 flagellin modificatio 96.7 0.012 2.6E-07 53.1 9.5 33 44-94 5-37 (256)
93 PRK05717 oxidoreductase; Valid 96.7 0.0085 1.8E-07 54.4 8.5 36 38-93 7-42 (255)
94 TIGR03206 benzo_BadH 2-hydroxy 96.7 0.021 4.6E-07 51.2 11.0 33 44-94 4-36 (250)
95 PRK08278 short chain dehydroge 96.7 0.022 4.8E-07 52.6 11.3 34 44-95 7-40 (273)
96 PRK06171 sorbitol-6-phosphate 96.7 0.013 2.8E-07 53.5 9.6 37 39-95 7-43 (266)
97 PRK06077 fabG 3-ketoacyl-(acyl 96.6 0.023 5E-07 51.1 11.0 33 44-94 7-39 (252)
98 PRK07825 short chain dehydroge 96.6 0.025 5.4E-07 51.9 11.4 33 44-94 6-38 (273)
99 PRK08945 putative oxoacyl-(acy 96.6 0.011 2.5E-07 53.3 8.8 33 44-94 13-45 (247)
100 PRK07856 short chain dehydroge 96.6 0.014 3.1E-07 52.9 9.5 36 39-94 4-39 (252)
101 PRK06523 short chain dehydroge 96.6 0.013 2.9E-07 53.2 9.3 38 38-95 6-43 (260)
102 PRK06997 enoyl-(acyl carrier p 96.6 0.023 4.9E-07 52.4 10.9 36 39-93 4-40 (260)
103 PRK05565 fabG 3-ketoacyl-(acyl 96.6 0.029 6.2E-07 50.1 11.2 32 44-93 6-38 (247)
104 PRK08993 2-deoxy-D-gluconate 3 96.6 0.02 4.4E-07 52.1 10.4 35 39-93 8-42 (253)
105 PRK12829 short chain dehydroge 96.6 0.023 4.9E-07 51.5 10.7 36 39-94 9-44 (264)
106 PRK12825 fabG 3-ketoacyl-(acyl 96.6 0.03 6.4E-07 49.7 11.2 34 44-95 7-40 (249)
107 PRK08415 enoyl-(acyl carrier p 96.6 0.022 4.7E-07 53.2 10.7 34 44-94 6-40 (274)
108 PRK07453 protochlorophyllide o 96.6 0.022 4.7E-07 54.0 10.8 33 44-94 7-39 (322)
109 PLN02253 xanthoxin dehydrogena 96.5 0.02 4.2E-07 52.8 10.1 36 39-94 16-51 (280)
110 PRK06505 enoyl-(acyl carrier p 96.5 0.023 4.9E-07 52.8 10.6 36 39-93 5-41 (271)
111 PRK05875 short chain dehydroge 96.5 0.019 4.2E-07 52.7 9.9 36 39-94 5-40 (276)
112 PRK07985 oxidoreductase; Provi 96.5 0.022 4.9E-07 53.5 10.6 35 39-93 47-81 (294)
113 PRK12384 sorbitol-6-phosphate 96.5 0.018 3.8E-07 52.3 9.6 33 44-94 3-35 (259)
114 PRK12935 acetoacetyl-CoA reduc 96.5 0.028 6E-07 50.5 10.8 33 44-94 7-39 (247)
115 PRK12744 short chain dehydroge 96.5 0.032 6.8E-07 50.8 11.1 36 39-94 6-41 (257)
116 COG0300 DltE Short-chain dehyd 96.5 0.026 5.7E-07 53.3 10.7 36 43-96 6-41 (265)
117 PRK06914 short chain dehydroge 96.5 0.017 3.7E-07 53.1 9.3 33 44-94 4-36 (280)
118 PRK08263 short chain dehydroge 96.5 0.018 3.8E-07 53.1 9.5 33 44-94 4-36 (275)
119 PRK07326 short chain dehydroge 96.5 0.032 6.9E-07 49.7 10.8 33 44-94 7-39 (237)
120 PRK08340 glucose-1-dehydrogena 96.5 0.033 7.1E-07 50.8 11.1 33 44-94 1-33 (259)
121 PRK08217 fabG 3-ketoacyl-(acyl 96.5 0.039 8.5E-07 49.4 11.4 33 44-94 6-38 (253)
122 PRK12748 3-ketoacyl-(acyl-carr 96.5 0.033 7.2E-07 50.6 11.1 37 39-94 3-40 (256)
123 PRK06181 short chain dehydroge 96.5 0.034 7.3E-07 50.6 11.0 33 44-94 2-34 (263)
124 PRK07792 fabG 3-ketoacyl-(acyl 96.5 0.027 5.9E-07 53.2 10.8 36 38-93 9-44 (306)
125 PRK07806 short chain dehydroge 96.4 0.038 8.2E-07 49.7 11.1 36 39-94 4-39 (248)
126 TIGR01829 AcAcCoA_reduct aceto 96.4 0.036 7.8E-07 49.4 10.8 25 70-94 9-33 (242)
127 PRK06182 short chain dehydroge 96.4 0.035 7.7E-07 51.0 11.0 33 44-94 4-36 (273)
128 PRK07677 short chain dehydroge 96.4 0.03 6.6E-07 50.7 10.4 33 44-94 2-34 (252)
129 PRK06180 short chain dehydroge 96.4 0.018 4E-07 53.2 9.0 33 44-94 5-37 (277)
130 PRK12747 short chain dehydroge 96.4 0.041 9E-07 49.7 11.1 32 44-93 5-36 (252)
131 PRK06482 short chain dehydroge 96.4 0.021 4.6E-07 52.5 9.2 33 44-94 3-35 (276)
132 PLN02778 3,5-epimerase/4-reduc 96.4 0.013 2.7E-07 55.6 7.9 32 42-91 8-39 (298)
133 PRK07454 short chain dehydroge 96.4 0.041 9E-07 49.3 10.9 33 44-94 7-39 (241)
134 TIGR01289 LPOR light-dependent 96.4 0.026 5.6E-07 53.7 10.0 33 44-94 4-37 (314)
135 PRK06463 fabG 3-ketoacyl-(acyl 96.4 0.027 5.8E-07 51.2 9.7 36 39-94 5-40 (255)
136 PRK06198 short chain dehydroge 96.4 0.034 7.5E-07 50.3 10.4 36 39-94 4-40 (260)
137 PRK05650 short chain dehydroge 96.3 0.04 8.8E-07 50.5 10.9 25 70-94 9-33 (270)
138 PRK06113 7-alpha-hydroxysteroi 96.3 0.045 9.8E-07 49.7 11.1 33 44-94 12-44 (255)
139 PRK06484 short chain dehydroge 96.3 0.019 4.1E-07 58.0 9.4 75 17-94 213-302 (520)
140 PRK06947 glucose-1-dehydrogena 96.3 0.034 7.5E-07 50.0 10.2 33 44-94 3-35 (248)
141 PRK06057 short chain dehydroge 96.3 0.045 9.7E-07 49.7 10.9 36 39-94 5-40 (255)
142 PRK06720 hypothetical protein; 96.3 0.059 1.3E-06 47.2 11.3 33 44-94 17-49 (169)
143 PRK06701 short chain dehydroge 96.3 0.04 8.7E-07 51.7 10.9 33 44-94 47-79 (290)
144 KOG1201 Hydroxysteroid 17-beta 96.3 0.032 7E-07 53.4 10.1 38 37-94 34-71 (300)
145 PRK07577 short chain dehydroge 96.3 0.025 5.3E-07 50.4 9.0 34 44-95 4-37 (234)
146 TIGR02415 23BDH acetoin reduct 96.3 0.045 9.8E-07 49.3 10.8 25 70-94 9-33 (254)
147 PRK12828 short chain dehydroge 96.3 0.051 1.1E-06 48.1 11.0 33 44-94 8-40 (239)
148 PRK08220 2,3-dihydroxybenzoate 96.3 0.03 6.6E-07 50.3 9.5 37 39-95 6-42 (252)
149 PRK07067 sorbitol dehydrogenas 96.3 0.028 6.1E-07 51.0 9.3 33 44-94 7-39 (257)
150 KOG1210 Predicted 3-ketosphing 96.3 0.014 3.1E-07 56.3 7.5 35 44-96 34-68 (331)
151 PRK09135 pteridine reductase; 96.2 0.023 5E-07 50.8 8.5 33 44-94 7-39 (249)
152 PRK08264 short chain dehydroge 96.2 0.024 5.2E-07 50.7 8.5 34 44-95 7-41 (238)
153 PLN02653 GDP-mannose 4,6-dehyd 96.2 0.025 5.4E-07 53.8 9.1 38 38-95 3-40 (340)
154 PRK07889 enoyl-(acyl carrier p 96.2 0.042 9.1E-07 50.4 10.3 37 39-93 5-41 (256)
155 PRK08267 short chain dehydroge 96.2 0.047 1E-06 49.6 10.5 33 44-94 2-34 (260)
156 PRK09134 short chain dehydroge 96.2 0.049 1.1E-06 49.5 10.6 33 44-94 10-42 (258)
157 PRK07832 short chain dehydroge 96.2 0.056 1.2E-06 49.7 11.0 33 44-94 1-33 (272)
158 PRK13656 trans-2-enoyl-CoA red 96.2 0.087 1.9E-06 52.5 12.8 66 9-93 7-74 (398)
159 PLN02780 ketoreductase/ oxidor 96.1 0.039 8.4E-07 52.9 10.0 34 43-94 53-86 (320)
160 PRK06483 dihydromonapterin red 96.1 0.036 7.8E-07 49.6 9.2 33 44-94 3-35 (236)
161 PRK12936 3-ketoacyl-(acyl-carr 96.1 0.074 1.6E-06 47.4 11.2 32 44-93 7-38 (245)
162 PRK07201 short chain dehydroge 96.1 0.047 1E-06 56.6 11.3 33 44-94 372-404 (657)
163 PRK10538 malonic semialdehyde 96.1 0.035 7.6E-07 50.3 9.1 25 70-94 9-33 (248)
164 PRK05855 short chain dehydroge 96.1 0.1 2.2E-06 52.6 13.3 25 70-94 324-348 (582)
165 PRK07831 short chain dehydroge 96.1 0.043 9.3E-07 50.0 9.6 33 44-93 18-50 (262)
166 PRK06484 short chain dehydroge 96.0 0.051 1.1E-06 54.8 10.8 33 44-94 6-38 (520)
167 TIGR01472 gmd GDP-mannose 4,6- 96.0 0.022 4.7E-07 54.4 7.6 34 44-95 1-34 (343)
168 PRK06123 short chain dehydroge 96.0 0.072 1.6E-06 47.8 10.6 32 44-93 3-34 (248)
169 PRK05993 short chain dehydroge 96.0 0.073 1.6E-06 49.2 10.9 33 44-94 5-37 (277)
170 PRK07904 short chain dehydroge 96.0 0.084 1.8E-06 48.4 11.0 36 41-94 6-42 (253)
171 PRK08703 short chain dehydroge 95.9 0.073 1.6E-06 47.7 10.3 36 39-94 4-39 (239)
172 PRK06550 fabG 3-ketoacyl-(acyl 95.9 0.041 8.8E-07 49.1 8.6 36 39-94 3-38 (235)
173 PRK05693 short chain dehydroge 95.9 0.054 1.2E-06 49.8 9.6 33 44-94 2-34 (274)
174 TIGR02622 CDP_4_6_dhtase CDP-g 95.9 0.044 9.6E-07 52.5 9.0 33 44-94 5-37 (349)
175 PLN02695 GDP-D-mannose-3',5'-e 95.8 0.046 1E-06 53.3 9.1 40 37-94 15-54 (370)
176 PRK09730 putative NAD(P)-bindi 95.8 0.093 2E-06 46.8 10.4 24 70-93 10-33 (247)
177 PRK07775 short chain dehydroge 95.8 0.11 2.5E-06 47.9 11.2 33 44-94 11-43 (274)
178 PRK12824 acetoacetyl-CoA reduc 95.8 0.11 2.4E-06 46.2 10.8 33 44-94 3-35 (245)
179 PRK08261 fabG 3-ketoacyl-(acyl 95.7 0.099 2.1E-06 52.0 11.2 71 20-94 166-243 (450)
180 PRK08177 short chain dehydroge 95.7 0.046 9.9E-07 48.8 7.9 33 44-94 2-34 (225)
181 KOG1502 Flavonol reductase/cin 95.7 0.053 1.2E-06 52.7 8.7 34 43-94 6-39 (327)
182 PLN00198 anthocyanidin reducta 95.7 0.034 7.4E-07 52.9 7.4 34 44-95 10-43 (338)
183 PRK07074 short chain dehydroge 95.7 0.076 1.7E-06 48.0 9.3 33 44-94 3-35 (257)
184 TIGR02632 RhaD_aldol-ADH rhamn 95.6 0.068 1.5E-06 56.6 10.1 37 38-94 411-447 (676)
185 PRK05599 hypothetical protein; 95.6 0.084 1.8E-06 48.0 9.4 32 44-94 1-32 (246)
186 PRK09987 dTDP-4-dehydrorhamnos 95.6 0.041 8.9E-07 51.8 7.4 32 44-94 1-32 (299)
187 PRK07069 short chain dehydroge 95.6 0.077 1.7E-06 47.6 8.9 25 70-94 8-32 (251)
188 smart00822 PKS_KR This enzymat 95.5 0.13 2.9E-06 42.4 9.7 24 70-93 9-33 (180)
189 PRK07060 short chain dehydroge 95.5 0.077 1.7E-06 47.4 8.7 36 39-94 7-42 (245)
190 PRK12742 oxidoreductase; Provi 95.5 0.075 1.6E-06 47.3 8.6 35 39-93 4-38 (237)
191 PF13561 adh_short_C2: Enoyl-( 95.5 0.11 2.5E-06 46.8 9.7 82 69-187 4-86 (241)
192 PRK06125 short chain dehydroge 95.4 0.16 3.4E-06 46.2 10.6 36 39-94 5-40 (259)
193 TIGR03466 HpnA hopanoid-associ 95.4 0.084 1.8E-06 49.2 9.0 27 70-96 9-35 (328)
194 PLN02896 cinnamyl-alcohol dehy 95.4 0.085 1.8E-06 50.6 9.2 34 43-94 10-43 (353)
195 PRK08642 fabG 3-ketoacyl-(acyl 95.4 0.15 3.2E-06 45.8 10.2 33 44-94 6-38 (253)
196 PRK10217 dTDP-glucose 4,6-dehy 95.4 0.065 1.4E-06 51.2 8.2 33 44-94 2-34 (355)
197 TIGR02685 pter_reduc_Leis pter 95.4 0.14 3E-06 47.0 10.0 33 44-94 2-34 (267)
198 KOG0725 Reductases with broad 95.4 0.12 2.6E-06 48.8 9.7 39 38-96 5-43 (270)
199 PLN02427 UDP-apiose/xylose syn 95.4 0.066 1.4E-06 52.1 8.3 33 44-94 15-48 (386)
200 KOG1208 Dehydrogenases with di 95.3 0.17 3.6E-06 49.0 10.9 34 44-95 36-69 (314)
201 PF01073 3Beta_HSD: 3-beta hyd 95.2 0.064 1.4E-06 50.6 7.3 25 70-94 6-32 (280)
202 PRK08324 short chain dehydroge 95.2 0.18 3.8E-06 53.4 11.4 37 38-94 419-455 (681)
203 PF04321 RmlD_sub_bind: RmlD s 95.2 0.059 1.3E-06 50.8 7.0 26 69-94 8-33 (286)
204 PRK06940 short chain dehydroge 95.1 0.19 4.1E-06 46.6 10.2 22 72-94 12-33 (275)
205 TIGR01214 rmlD dTDP-4-dehydror 94.8 0.11 2.3E-06 47.9 7.7 25 70-94 8-32 (287)
206 TIGR03589 PseB UDP-N-acetylglu 94.7 0.096 2.1E-06 50.0 7.2 33 44-94 5-39 (324)
207 PRK05884 short chain dehydroge 94.6 0.3 6.6E-06 43.8 9.8 25 70-94 9-33 (223)
208 COG1086 Predicted nucleoside-d 94.5 0.11 2.5E-06 53.7 7.6 36 43-96 250-285 (588)
209 PRK08125 bifunctional UDP-gluc 94.5 0.1 2.3E-06 54.9 7.5 35 43-95 315-350 (660)
210 PF01370 Epimerase: NAD depend 94.5 0.11 2.3E-06 46.0 6.5 27 70-96 7-33 (236)
211 TIGR01181 dTDP_gluc_dehyt dTDP 94.3 0.17 3.7E-06 46.7 7.8 24 70-93 8-33 (317)
212 PRK15181 Vi polysaccharide bio 94.3 0.083 1.8E-06 50.8 5.7 44 31-94 5-48 (348)
213 PLN02662 cinnamyl-alcohol dehy 94.2 0.088 1.9E-06 49.3 5.7 36 42-95 3-38 (322)
214 TIGR01831 fabG_rel 3-oxoacyl-( 94.1 0.46 9.9E-06 42.4 9.8 25 70-94 7-31 (239)
215 TIGR01830 3oxo_ACP_reduc 3-oxo 94.1 0.52 1.1E-05 41.7 10.0 26 69-94 6-31 (239)
216 COG0451 WcaG Nucleoside-diphos 94.0 0.29 6.3E-06 45.2 8.5 27 70-96 9-35 (314)
217 PRK11908 NAD-dependent epimera 93.9 0.19 4.1E-06 48.0 7.4 33 44-94 2-35 (347)
218 PLN00015 protochlorophyllide r 93.6 0.37 8.1E-06 45.5 8.7 25 70-94 6-31 (308)
219 COG1028 FabG Dehydrogenases wi 93.5 0.14 3.1E-06 46.0 5.5 34 44-95 6-39 (251)
220 PRK07578 short chain dehydroge 93.5 0.49 1.1E-05 41.2 8.8 24 70-94 9-32 (199)
221 PRK12367 short chain dehydroge 93.4 0.12 2.7E-06 47.5 5.0 37 38-94 11-47 (245)
222 PLN02583 cinnamoyl-CoA reducta 93.4 0.13 2.8E-06 48.3 5.2 34 43-94 6-39 (297)
223 TIGR01777 yfcH conserved hypot 93.4 0.22 4.8E-06 45.5 6.6 28 69-96 6-33 (292)
224 PLN02986 cinnamyl-alcohol dehy 93.4 0.18 3.8E-06 47.6 6.0 36 42-95 4-39 (322)
225 PLN02260 probable rhamnose bio 93.3 0.26 5.6E-06 51.8 7.7 22 69-90 388-409 (668)
226 PRK05786 fabG 3-ketoacyl-(acyl 93.2 0.18 3.9E-06 44.9 5.6 33 44-94 6-38 (238)
227 PF08659 KR: KR domain; Inter 93.2 0.36 7.8E-06 42.2 7.4 25 70-94 9-34 (181)
228 cd01078 NAD_bind_H4MPT_DH NADP 93.0 3 6.4E-05 36.7 13.0 49 26-94 12-61 (194)
229 PRK06924 short chain dehydroge 93.0 0.17 3.6E-06 45.5 5.0 33 44-94 2-34 (251)
230 TIGR01746 Thioester-redct thio 92.7 0.71 1.5E-05 43.3 9.1 27 69-95 7-35 (367)
231 PLN02989 cinnamyl-alcohol dehy 92.7 0.23 4.9E-06 46.8 5.7 34 43-94 5-38 (325)
232 PRK06101 short chain dehydroge 92.3 0.23 5E-06 44.7 5.1 33 44-94 2-34 (240)
233 KOG1209 1-Acyl dihydroxyaceton 92.3 0.2 4.3E-06 46.5 4.5 37 43-96 7-43 (289)
234 PF13460 NAD_binding_10: NADH( 92.2 0.27 5.8E-06 42.1 5.1 28 69-96 6-33 (183)
235 PRK10084 dTDP-glucose 4,6 dehy 92.2 0.59 1.3E-05 44.5 7.9 31 44-92 1-31 (352)
236 PLN02572 UDP-sulfoquinovose sy 92.0 0.24 5.2E-06 49.8 5.2 33 43-93 47-79 (442)
237 PLN02730 enoyl-[acyl-carrier-p 92.0 0.25 5.3E-06 47.4 5.1 35 38-90 6-40 (303)
238 PRK07102 short chain dehydroge 92.0 0.27 5.7E-06 44.2 5.0 33 44-94 2-34 (243)
239 PRK09291 short chain dehydroge 91.9 0.29 6.4E-06 44.0 5.3 33 44-94 3-35 (257)
240 PLN02650 dihydroflavonol-4-red 91.9 0.26 5.7E-06 47.1 5.2 34 43-94 5-38 (351)
241 PRK09009 C factor cell-cell si 91.8 0.93 2E-05 40.3 8.4 32 44-93 1-34 (235)
242 TIGR01500 sepiapter_red sepiap 91.7 1 2.2E-05 40.9 8.7 24 71-94 10-37 (256)
243 TIGR01179 galE UDP-glucose-4-e 91.7 0.8 1.7E-05 42.3 8.0 24 70-93 8-31 (328)
244 PRK06300 enoyl-(acyl carrier p 91.7 0.29 6.3E-06 46.7 5.2 37 38-92 5-41 (299)
245 PLN02686 cinnamoyl-CoA reducta 91.7 0.3 6.5E-06 47.6 5.3 34 43-94 53-86 (367)
246 CHL00194 ycf39 Ycf39; Provisio 91.6 0.3 6.5E-06 46.2 5.2 26 70-95 9-34 (317)
247 TIGR02197 heptose_epim ADP-L-g 91.4 0.6 1.3E-05 43.3 6.9 25 70-94 7-32 (314)
248 KOG1014 17 beta-hydroxysteroid 91.3 0.45 9.7E-06 46.0 5.9 112 70-220 58-170 (312)
249 PLN02240 UDP-glucose 4-epimera 91.2 0.39 8.4E-06 45.6 5.4 32 44-93 6-37 (352)
250 PLN00016 RNA-binding protein; 91.1 0.26 5.7E-06 47.9 4.4 37 43-96 52-91 (378)
251 COG1091 RfbD dTDP-4-dehydrorha 91.1 0.57 1.2E-05 44.8 6.4 25 69-94 8-32 (281)
252 PLN02214 cinnamoyl-CoA reducta 91.0 0.41 9E-06 46.0 5.5 33 44-94 11-43 (342)
253 PRK08017 oxidoreductase; Provi 90.8 0.43 9.3E-06 42.9 5.2 33 44-94 3-35 (256)
254 PLN00141 Tic62-NAD(P)-related 90.7 0.45 9.7E-06 43.4 5.2 34 43-94 17-50 (251)
255 PRK07023 short chain dehydroge 90.4 0.43 9.4E-06 42.8 4.8 33 44-94 2-34 (243)
256 PLN02657 3,8-divinyl protochlo 90.4 0.54 1.2E-05 46.4 5.8 36 43-96 60-95 (390)
257 PRK07424 bifunctional sterol d 90.4 0.51 1.1E-05 47.3 5.6 33 44-94 179-211 (406)
258 PRK05865 hypothetical protein; 90.4 1.1 2.3E-05 49.1 8.5 25 70-94 9-33 (854)
259 PLN03209 translocon at the inn 90.4 0.43 9.4E-06 49.8 5.3 34 43-94 80-113 (576)
260 PLN02260 probable rhamnose bio 90.0 1.3 2.8E-05 46.6 8.7 32 44-93 7-40 (668)
261 PLN02206 UDP-glucuronate decar 90.0 0.5 1.1E-05 47.6 5.3 34 42-93 118-151 (442)
262 PRK12446 undecaprenyldiphospho 90.0 0.35 7.5E-06 47.1 4.1 39 44-96 2-40 (352)
263 COG0452 Dfp Phosphopantothenoy 89.8 0.008 1.7E-07 59.8 -7.6 215 44-264 80-324 (392)
264 PF03033 Glyco_transf_28: Glyc 89.7 0.24 5.2E-06 40.6 2.3 35 46-94 1-35 (139)
265 COG1249 Lpd Pyruvate/2-oxoglut 89.6 1.5 3.3E-05 44.6 8.4 54 44-99 137-210 (454)
266 PF05368 NmrA: NmrA-like famil 89.4 1 2.2E-05 40.4 6.3 27 69-95 6-32 (233)
267 TIGR03649 ergot_EASG ergot alk 89.0 0.57 1.2E-05 43.3 4.6 28 69-96 7-34 (285)
268 PRK14982 acyl-ACP reductase; P 88.8 1.8 3.9E-05 42.4 8.0 36 38-93 152-189 (340)
269 PRK07041 short chain dehydroge 88.7 3 6.5E-05 36.8 8.8 26 69-94 5-30 (230)
270 KOG4169 15-hydroxyprostaglandi 88.5 1.9 4.1E-05 40.3 7.5 36 39-94 3-38 (261)
271 PF02719 Polysacc_synt_2: Poly 88.5 1.2 2.6E-05 42.8 6.5 24 70-93 7-31 (293)
272 PRK10675 UDP-galactose-4-epime 88.2 0.87 1.9E-05 42.9 5.3 25 70-94 9-33 (338)
273 PRK06953 short chain dehydroge 88.1 0.81 1.8E-05 40.6 4.7 33 44-94 2-34 (222)
274 COG2910 Putative NADH-flavin r 88.1 0.51 1.1E-05 42.7 3.4 31 69-99 8-38 (211)
275 PLN02166 dTDP-glucose 4,6-dehy 87.6 0.94 2E-05 45.5 5.4 34 43-94 120-153 (436)
276 PRK14194 bifunctional 5,10-met 86.9 4 8.7E-05 39.4 8.9 61 11-94 130-192 (301)
277 PF07993 NAD_binding_4: Male s 86.6 0.39 8.5E-06 44.0 1.9 28 69-96 4-33 (249)
278 COG1087 GalE UDP-glucose 4-epi 86.5 4.1 8.8E-05 39.6 8.7 32 44-93 1-32 (329)
279 PRK11150 rfaD ADP-L-glycero-D- 86.2 1 2.2E-05 42.0 4.5 25 70-94 8-32 (308)
280 PRK08219 short chain dehydroge 85.8 1.2 2.6E-05 39.1 4.5 32 44-94 4-35 (227)
281 PRK06719 precorrin-2 dehydroge 85.7 1.5 3.2E-05 38.0 4.9 34 38-92 10-43 (157)
282 COG3967 DltE Short-chain dehyd 85.5 1.5 3.1E-05 40.6 4.9 33 44-94 6-38 (245)
283 PRK06718 precorrin-2 dehydroge 85.2 1.6 3.5E-05 39.4 5.1 34 39-93 8-41 (202)
284 PLN02725 GDP-4-keto-6-deoxyman 84.5 1.8 3.8E-05 40.0 5.2 24 69-92 5-28 (306)
285 cd01075 NAD_bind_Leu_Phe_Val_D 84.0 4 8.7E-05 36.6 7.1 34 37-91 24-57 (200)
286 PRK08309 short chain dehydroge 83.6 2 4.4E-05 37.9 4.9 32 44-94 1-32 (177)
287 PF13241 NAD_binding_7: Putati 82.4 1.6 3.5E-05 34.8 3.5 35 39-94 5-39 (103)
288 PRK14106 murD UDP-N-acetylmura 82.4 2.4 5.3E-05 42.1 5.5 32 44-94 6-37 (450)
289 PF12242 Eno-Rase_NADH_b: NAD( 82.3 2.1 4.6E-05 33.2 3.9 42 32-93 29-72 (78)
290 PRK14188 bifunctional 5,10-met 82.1 9.2 0.0002 36.8 9.1 61 11-94 129-191 (296)
291 TIGR01133 murG undecaprenyldip 82.0 1.9 4.1E-05 40.5 4.4 38 44-95 1-38 (348)
292 TIGR02813 omega_3_PfaA polyket 82.0 9.9 0.00022 46.6 11.1 38 56-94 1993-2031(2582)
293 PRK14175 bifunctional 5,10-met 81.8 9.1 0.0002 36.7 8.9 61 11-94 129-191 (286)
294 cd01080 NAD_bind_m-THF_DH_Cycl 81.5 5.5 0.00012 35.0 6.8 52 19-94 25-77 (168)
295 PF00070 Pyr_redox: Pyridine n 81.0 3.4 7.3E-05 31.0 4.7 29 70-98 7-35 (80)
296 PRK14179 bifunctional 5,10-met 80.7 8.5 0.00018 36.9 8.3 62 10-94 128-191 (284)
297 COG1089 Gmd GDP-D-mannose dehy 80.6 4.7 0.0001 39.0 6.4 29 69-97 10-38 (345)
298 PF02737 3HCDH_N: 3-hydroxyacy 79.8 2.1 4.5E-05 37.8 3.6 25 70-94 7-31 (180)
299 KOG1200 Mitochondrial/plastidi 79.2 6.8 0.00015 36.1 6.7 35 44-96 15-49 (256)
300 PRK12320 hypothetical protein; 78.9 3 6.5E-05 44.7 5.1 33 44-94 1-33 (699)
301 COG0702 Predicted nucleoside-d 78.6 3.2 6.9E-05 37.4 4.5 27 70-96 9-35 (275)
302 COG3320 Putative dehydrogenase 78.5 8.9 0.00019 38.2 7.8 28 69-96 8-36 (382)
303 COG0623 FabI Enoyl-[acyl-carri 77.0 35 0.00077 32.1 10.8 40 38-95 3-42 (259)
304 COG1090 Predicted nucleoside-d 76.8 3.2 6.8E-05 39.8 4.0 28 69-96 6-33 (297)
305 KOG1199 Short-chain alcohol de 76.5 17 0.00036 33.0 8.2 35 44-96 10-44 (260)
306 KOG1430 C-3 sterol dehydrogena 76.4 8.7 0.00019 38.1 7.1 33 44-94 5-39 (361)
307 PRK06849 hypothetical protein; 75.2 5.1 0.00011 39.2 5.2 34 43-94 4-37 (389)
308 PF03807 F420_oxidored: NADP o 74.8 4.5 9.6E-05 31.1 3.8 26 69-94 6-34 (96)
309 PLN02970 serine racemase 74.7 22 0.00047 34.3 9.4 103 67-182 80-183 (328)
310 PRK07334 threonine dehydratase 74.0 34 0.00073 34.0 10.7 101 68-181 77-178 (403)
311 TIGR01470 cysG_Nterm siroheme 73.8 6.8 0.00015 35.4 5.3 35 39-94 7-41 (205)
312 PRK07819 3-hydroxybutyryl-CoA 72.8 4.3 9.3E-05 38.4 3.9 34 61-94 4-37 (286)
313 PRK07201 short chain dehydroge 72.7 5.1 0.00011 41.6 4.7 33 44-94 1-35 (657)
314 PRK02472 murD UDP-N-acetylmura 72.0 6.3 0.00014 39.1 5.1 31 44-93 6-36 (447)
315 PRK14191 bifunctional 5,10-met 71.9 29 0.00063 33.3 9.3 61 11-94 128-190 (285)
316 KOG1371 UDP-glucose 4-epimeras 71.2 4.7 0.0001 39.4 3.8 33 43-93 2-34 (343)
317 PRK14178 bifunctional 5,10-met 70.9 51 0.0011 31.5 10.7 61 11-94 123-185 (279)
318 COG0373 HemA Glutamyl-tRNA red 70.6 47 0.001 33.6 10.8 57 17-94 153-210 (414)
319 KOG1207 Diacetyl reductase/L-x 70.2 12 0.00025 34.1 5.7 38 38-95 4-41 (245)
320 PRK06815 hypothetical protein; 69.6 34 0.00074 32.7 9.3 31 64-95 71-101 (317)
321 PF03446 NAD_binding_2: NAD bi 69.5 6.5 0.00014 33.7 4.0 24 70-93 9-32 (163)
322 PRK14190 bifunctional 5,10-met 69.3 63 0.0014 31.0 10.9 61 11-94 129-191 (284)
323 TIGR01275 ACC_deam_rel pyridox 68.8 70 0.0015 30.2 11.3 36 44-95 56-91 (311)
324 PRK06382 threonine dehydratase 68.7 47 0.001 33.0 10.4 101 67-180 78-179 (406)
325 cd00674 LysRS_core_class_I cat 68.1 18 0.00039 35.7 7.1 51 44-99 19-69 (353)
326 PRK07476 eutB threonine dehydr 68.0 24 0.00053 33.8 8.0 27 69-95 74-100 (322)
327 TIGR02991 ectoine_eutB ectoine 68.0 52 0.0011 31.5 10.3 29 67-95 72-100 (317)
328 PRK14170 bifunctional 5,10-met 68.0 29 0.00062 33.3 8.3 62 11-95 128-191 (284)
329 TIGR01127 ilvA_1Cterm threonin 67.5 54 0.0012 32.0 10.5 28 69-96 55-82 (380)
330 PF01210 NAD_Gly3P_dh_N: NAD-d 67.5 5.8 0.00013 33.9 3.2 27 69-95 6-32 (157)
331 PRK07066 3-hydroxybutyryl-CoA 67.4 6.7 0.00015 38.1 4.0 33 61-93 6-38 (321)
332 PF01488 Shikimate_DH: Shikima 66.7 29 0.00063 28.9 7.3 24 70-93 20-44 (135)
333 PRK08638 threonine dehydratase 66.5 37 0.0008 32.9 8.9 32 64-95 77-108 (333)
334 COG4821 Uncharacterized protei 66.5 14 0.0003 34.1 5.5 54 22-93 86-139 (243)
335 cd01561 CBS_like CBS_like: Thi 66.0 77 0.0017 29.7 10.8 28 68-95 59-86 (291)
336 PRK08198 threonine dehydratase 66.0 60 0.0013 32.1 10.5 101 68-180 76-176 (404)
337 cd01562 Thr-dehyd Threonine de 65.8 46 0.00099 31.2 9.3 28 68-95 71-98 (304)
338 cd03785 GT1_MurG MurG is an N- 65.6 9.2 0.0002 35.9 4.5 38 45-96 1-38 (350)
339 cd01563 Thr-synth_1 Threonine 65.6 33 0.00071 32.7 8.3 29 68-96 76-104 (324)
340 COG2085 Predicted dinucleotide 64.6 7.7 0.00017 35.6 3.6 167 68-265 7-183 (211)
341 PRK07048 serine/threonine dehy 64.2 41 0.0009 32.1 8.7 29 67-95 77-105 (321)
342 TIGR01915 npdG NADPH-dependent 64.2 8.7 0.00019 34.6 3.9 25 70-94 9-33 (219)
343 PRK10792 bifunctional 5,10-met 64.2 43 0.00093 32.1 8.7 54 18-94 139-192 (285)
344 cd01079 NAD_bind_m-THF_DH NAD 64.0 1.2E+02 0.0025 27.7 11.1 59 18-96 33-97 (197)
345 cd06448 L-Ser-dehyd Serine deh 63.9 46 0.001 31.9 9.0 31 65-95 54-84 (316)
346 PRK14183 bifunctional 5,10-met 63.3 42 0.00091 32.1 8.4 61 11-94 128-190 (281)
347 KOG1372 GDP-mannose 4,6 dehydr 63.3 9.1 0.0002 36.5 3.8 28 69-96 36-63 (376)
348 PRK06115 dihydrolipoamide dehy 62.5 22 0.00048 35.8 6.8 56 44-99 138-211 (466)
349 PRK13028 tryptophan synthase s 62.4 71 0.0015 32.0 10.3 33 63-95 112-144 (402)
350 cd05212 NAD_bind_m-THF_DH_Cycl 61.8 40 0.00087 28.7 7.3 53 19-94 9-61 (140)
351 PRK08246 threonine dehydratase 61.7 68 0.0015 30.6 9.7 34 62-95 68-101 (310)
352 PRK14176 bifunctional 5,10-met 61.0 51 0.0011 31.7 8.5 54 18-94 144-197 (287)
353 PRK06444 prephenate dehydrogen 60.9 8.2 0.00018 34.9 3.0 21 69-89 8-28 (197)
354 TIGR01136 cysKM cysteine synth 60.7 90 0.002 29.4 10.3 28 68-95 64-91 (299)
355 PRK06129 3-hydroxyacyl-CoA deh 60.4 9.8 0.00021 36.2 3.7 25 70-94 10-34 (308)
356 cd02006 TPP_Gcl Thiamine pyrop 59.9 25 0.00055 31.2 6.0 72 19-98 7-88 (202)
357 PRK14186 bifunctional 5,10-met 59.6 58 0.0012 31.5 8.7 62 11-95 129-192 (297)
358 COG0569 TrkA K+ transport syst 59.5 9 0.0002 35.0 3.1 27 70-96 8-34 (225)
359 cd02071 MM_CoA_mut_B12_BD meth 59.3 79 0.0017 25.8 8.5 37 144-181 50-86 (122)
360 TIGR00467 lysS_arch lysyl-tRNA 58.9 19 0.00042 37.3 5.7 52 44-100 18-69 (515)
361 KOG1429 dTDP-glucose 4-6-dehyd 58.9 18 0.00039 35.2 5.0 33 44-94 28-60 (350)
362 PRK12428 3-alpha-hydroxysteroi 58.7 15 0.00033 33.0 4.5 18 77-94 1-18 (241)
363 PRK08526 threonine dehydratase 58.3 1.1E+02 0.0023 30.7 10.7 103 65-180 72-174 (403)
364 PLN02996 fatty acyl-CoA reduct 58.0 14 0.00031 37.7 4.6 34 44-95 12-48 (491)
365 PRK00750 lysK lysyl-tRNA synth 57.8 33 0.00072 35.4 7.2 52 44-100 23-74 (510)
366 PRK14619 NAD(P)H-dependent gly 57.8 13 0.00028 35.3 4.0 27 69-95 11-37 (308)
367 PRK14177 bifunctional 5,10-met 57.7 66 0.0014 30.9 8.7 61 11-94 130-192 (284)
368 COG1157 FliI Flagellar biosynt 57.6 14 0.00031 37.3 4.3 59 28-94 203-261 (441)
369 cd02013 TPP_Xsc_like Thiamine 57.6 24 0.00052 31.3 5.5 71 18-97 2-83 (196)
370 TIGR02853 spore_dpaA dipicolin 57.5 22 0.00048 33.8 5.5 36 38-94 148-183 (287)
371 PRK10717 cysteine synthase A; 57.3 1.1E+02 0.0024 29.2 10.4 28 68-95 70-97 (330)
372 KOG2304 3-hydroxyacyl-CoA dehy 57.1 7.8 0.00017 36.5 2.2 36 61-96 10-45 (298)
373 cd02010 TPP_ALS Thiamine pyrop 56.8 25 0.00053 30.7 5.3 53 44-97 15-78 (177)
374 PRK06608 threonine dehydratase 56.8 1E+02 0.0022 30.0 10.1 29 67-95 77-105 (338)
375 TIGR01139 cysK cysteine syntha 56.5 1E+02 0.0022 29.0 9.9 27 69-95 64-90 (298)
376 TIGR00215 lpxB lipid-A-disacch 56.4 9.5 0.00021 37.5 2.9 37 44-95 6-42 (385)
377 PRK14618 NAD(P)H-dependent gly 56.2 13 0.00028 35.5 3.8 26 69-94 11-36 (328)
378 PRK14173 bifunctional 5,10-met 56.2 70 0.0015 30.7 8.6 63 10-95 125-189 (287)
379 cd00640 Trp-synth-beta_II Tryp 56.1 1.6E+02 0.0034 26.6 10.9 28 69-96 57-84 (244)
380 PF01113 DapB_N: Dihydrodipico 55.7 22 0.00048 29.2 4.6 32 62-93 1-33 (124)
381 PRK14166 bifunctional 5,10-met 55.4 74 0.0016 30.5 8.6 62 10-94 126-190 (282)
382 PF02558 ApbA: Ketopantoate re 55.2 14 0.00031 30.6 3.5 26 70-95 6-31 (151)
383 PRK09260 3-hydroxybutyryl-CoA 55.0 12 0.00026 35.1 3.3 26 69-94 8-33 (288)
384 PRK00726 murG undecaprenyldiph 54.9 20 0.00043 34.0 4.8 39 44-96 2-40 (357)
385 PF02882 THF_DHG_CYH_C: Tetrah 54.9 27 0.00058 30.6 5.2 54 19-95 17-70 (160)
386 PRK14169 bifunctional 5,10-met 54.8 79 0.0017 30.3 8.7 62 11-95 127-190 (282)
387 PLN02545 3-hydroxybutyryl-CoA 54.6 14 0.00031 34.7 3.7 26 69-94 11-36 (295)
388 TIGR00715 precor6x_red precorr 54.3 19 0.00041 33.8 4.4 68 205-277 152-233 (256)
389 cd01132 F1_ATPase_alpha F1 ATP 54.2 31 0.00068 32.9 5.9 43 44-94 127-169 (274)
390 PRK08293 3-hydroxybutyryl-CoA 54.1 14 0.0003 34.7 3.5 27 68-94 9-35 (287)
391 PLN02503 fatty acyl-CoA reduct 54.1 17 0.00036 38.5 4.4 34 44-95 120-156 (605)
392 PRK14182 bifunctional 5,10-met 53.8 88 0.0019 30.0 8.9 62 10-94 126-190 (282)
393 PRK12548 shikimate 5-dehydroge 53.5 26 0.00055 33.2 5.2 24 71-94 135-159 (289)
394 PRK06035 3-hydroxyacyl-CoA deh 53.2 18 0.00039 34.0 4.1 33 62-94 3-35 (291)
395 PRK14180 bifunctional 5,10-met 52.9 89 0.0019 30.0 8.7 55 18-95 138-192 (282)
396 PRK07846 mycothione reductase; 52.8 33 0.00071 34.5 6.1 56 44-99 130-203 (451)
397 COG0707 MurG UDP-N-acetylgluco 52.6 17 0.00037 35.8 3.9 36 44-93 1-37 (357)
398 PRK05638 threonine synthase; V 52.5 1.2E+02 0.0026 30.6 10.1 28 68-95 118-145 (442)
399 PRK06130 3-hydroxybutyryl-CoA 52.1 20 0.00044 33.8 4.3 34 61-94 3-36 (311)
400 TIGR02279 PaaC-3OHAcCoADH 3-hy 52.0 16 0.00034 37.7 3.7 26 69-94 12-37 (503)
401 cd02002 TPP_BFDC Thiamine pyro 51.6 44 0.00096 28.6 6.1 36 61-97 40-79 (178)
402 PF13738 Pyr_redox_3: Pyridine 51.5 25 0.00055 30.2 4.5 25 70-94 175-199 (203)
403 PLN02520 bifunctional 3-dehydr 51.3 51 0.0011 34.1 7.4 31 44-93 380-410 (529)
404 COG1250 FadB 3-hydroxyacyl-CoA 51.2 12 0.00027 36.2 2.7 28 67-94 8-35 (307)
405 TIGR01041 ATP_syn_B_arch ATP s 50.8 28 0.0006 35.6 5.2 43 44-94 203-246 (458)
406 PRK06381 threonine synthase; V 50.8 1.5E+02 0.0033 28.1 10.2 28 68-95 69-96 (319)
407 PRK14187 bifunctional 5,10-met 50.6 97 0.0021 29.9 8.6 55 18-95 140-194 (294)
408 PRK05249 soluble pyridine nucl 50.6 38 0.00081 33.7 6.1 30 70-99 183-212 (461)
409 PRK00711 D-amino acid dehydrog 50.5 28 0.0006 33.8 5.1 24 71-94 9-32 (416)
410 PRK01438 murD UDP-N-acetylmura 50.4 35 0.00076 34.3 5.9 24 71-94 25-48 (480)
411 PRK09288 purT phosphoribosylgl 50.1 36 0.00078 33.0 5.8 34 42-94 11-44 (395)
412 PRK06522 2-dehydropantoate 2-r 49.9 19 0.00041 33.4 3.7 26 69-94 7-32 (304)
413 PRK00094 gpsA NAD(P)H-dependen 49.8 20 0.00043 33.7 3.9 26 69-94 8-33 (325)
414 PRK00258 aroE shikimate 5-dehy 49.7 36 0.00078 31.9 5.5 25 70-94 131-156 (278)
415 PLN02516 methylenetetrahydrofo 49.6 65 0.0014 31.2 7.3 54 18-94 147-200 (299)
416 TIGR01505 tartro_sem_red 2-hyd 49.6 18 0.00039 33.8 3.5 26 69-94 6-31 (291)
417 TIGR02079 THD1 threonine dehyd 49.5 1.8E+02 0.0038 29.1 10.7 30 66-95 68-97 (409)
418 PRK14172 bifunctional 5,10-met 49.5 89 0.0019 29.9 8.1 61 11-94 129-191 (278)
419 cd06449 ACCD Aminocyclopropane 49.3 31 0.00068 32.7 5.1 28 69-96 61-88 (307)
420 PRK14192 bifunctional 5,10-met 49.3 76 0.0016 30.2 7.7 52 19-93 140-191 (283)
421 TIGR02437 FadB fatty oxidation 49.1 18 0.00039 38.9 3.8 35 60-94 311-345 (714)
422 PRK09224 threonine dehydratase 49.0 1.6E+02 0.0034 30.4 10.5 76 68-155 74-149 (504)
423 cd01135 V_A-ATPase_B V/A-type 49.0 27 0.00058 33.4 4.5 43 44-94 131-174 (276)
424 KOG1252 Cystathionine beta-syn 48.7 44 0.00095 33.0 6.0 52 23-93 84-135 (362)
425 PRK08329 threonine synthase; V 48.6 1.1E+02 0.0024 29.8 8.9 32 64-95 106-137 (347)
426 PRK14620 NAD(P)H-dependent gly 48.6 21 0.00045 34.0 3.8 26 69-94 7-32 (326)
427 PRK05808 3-hydroxybutyryl-CoA 48.3 18 0.00039 33.7 3.3 25 69-93 10-34 (282)
428 PRK08206 diaminopropionate amm 47.9 1.8E+02 0.0039 28.9 10.5 31 64-95 119-149 (399)
429 PRK12483 threonine dehydratase 47.8 1.7E+02 0.0037 30.4 10.6 76 68-155 91-166 (521)
430 PRK14171 bifunctional 5,10-met 47.6 71 0.0015 30.7 7.2 55 18-95 139-193 (288)
431 COG0031 CysK Cysteine synthase 47.6 22 0.00047 34.4 3.7 27 68-94 68-94 (300)
432 COG1798 DPH5 Diphthamide biosy 47.4 49 0.0011 31.3 5.8 70 7-95 44-113 (260)
433 PRK08268 3-hydroxy-acyl-CoA de 47.4 21 0.00046 36.7 3.9 33 62-94 7-39 (507)
434 KOG1478 3-keto sterol reductas 47.1 96 0.0021 29.9 7.8 27 43-87 3-29 (341)
435 COG1648 CysG Siroheme synthase 47.1 36 0.00078 31.0 4.9 36 39-95 10-45 (210)
436 PRK07530 3-hydroxybutyryl-CoA 47.1 27 0.00058 32.8 4.2 26 69-94 11-36 (292)
437 PLN03013 cysteine synthase 47.0 2.1E+02 0.0045 29.1 10.7 28 68-95 181-208 (429)
438 PRK06370 mercuric reductase; V 46.8 40 0.00086 33.7 5.7 55 43-99 134-208 (463)
439 PRK03910 D-cysteine desulfhydr 46.8 32 0.00069 33.1 4.8 27 69-95 73-99 (331)
440 PRK08972 fliI flagellum-specif 46.6 32 0.0007 35.1 4.9 43 44-94 218-260 (444)
441 PRK08813 threonine dehydratase 46.3 2.1E+02 0.0047 28.1 10.5 30 66-95 85-114 (349)
442 PF01266 DAO: FAD dependent ox 46.3 23 0.0005 32.7 3.7 25 70-94 7-31 (358)
443 TIGR01692 HIBADH 3-hydroxyisob 46.3 23 0.00049 33.3 3.6 25 70-94 4-28 (288)
444 PRK06456 acetolactate synthase 46.2 49 0.0011 34.2 6.4 69 20-97 372-451 (572)
445 KOG1610 Corticosteroid 11-beta 46.1 51 0.0011 32.2 5.9 33 42-92 28-60 (322)
446 PRK14031 glutamate dehydrogena 46.1 70 0.0015 32.7 7.2 48 25-93 211-259 (444)
447 PRK12831 putative oxidoreducta 46.1 34 0.00074 34.6 5.1 33 44-95 282-314 (464)
448 COG0143 MetG Methionyl-tRNA sy 45.9 26 0.00057 36.7 4.3 49 44-96 5-53 (558)
449 PRK08229 2-dehydropantoate 2-r 45.7 22 0.00047 33.9 3.4 26 69-94 9-34 (341)
450 cd01065 NAD_bind_Shikimate_DH 45.5 91 0.002 25.7 6.9 23 71-93 28-51 (155)
451 PRK05562 precorrin-2 dehydroge 45.5 40 0.00087 31.1 5.0 33 43-94 25-57 (223)
452 PRK14189 bifunctional 5,10-met 45.3 1.2E+02 0.0026 29.1 8.3 54 18-94 138-191 (285)
453 PRK04196 V-type ATP synthase s 45.1 40 0.00086 34.5 5.4 43 44-94 205-248 (460)
454 PRK07417 arogenate dehydrogena 45.0 25 0.00055 32.8 3.7 25 70-94 8-32 (279)
455 PRK14193 bifunctional 5,10-met 44.8 1.3E+02 0.0029 28.8 8.5 54 18-94 138-193 (284)
456 PF15581 Imm35: Immunity prote 44.6 42 0.00091 26.7 4.2 47 18-73 44-90 (93)
457 COG1433 Uncharacterized conser 44.6 27 0.00058 29.3 3.4 34 61-95 38-75 (121)
458 PRK06467 dihydrolipoamide dehy 44.5 42 0.00091 33.9 5.4 30 70-99 182-211 (471)
459 cd01133 F1-ATPase_beta F1 ATP 44.5 39 0.00084 32.2 4.9 60 23-94 111-171 (274)
460 PRK09754 phenylpropionate diox 44.4 42 0.00091 32.8 5.3 27 71-97 153-179 (396)
461 PRK07531 bifunctional 3-hydrox 44.4 22 0.00048 36.4 3.4 26 69-94 11-36 (495)
462 PRK15461 NADH-dependent gamma- 44.4 25 0.00054 33.2 3.6 26 69-94 8-33 (296)
463 PRK11730 fadB multifunctional 44.1 23 0.00051 38.0 3.7 35 60-94 311-345 (715)
464 PF02662 FlpD: Methyl-viologen 44.0 1.4E+02 0.003 24.8 7.6 34 61-94 28-61 (124)
465 PRK06416 dihydrolipoamide dehy 43.6 47 0.001 33.1 5.6 57 43-99 135-209 (462)
466 cd02015 TPP_AHAS Thiamine pyro 43.5 78 0.0017 27.6 6.4 67 22-97 3-80 (186)
467 COG0529 CysC Adenylylsulfate k 43.4 84 0.0018 28.6 6.5 26 70-95 34-61 (197)
468 PRK04308 murD UDP-N-acetylmura 43.1 42 0.00092 33.4 5.2 32 44-94 6-37 (445)
469 PRK08639 threonine dehydratase 43.0 2.3E+02 0.0049 28.3 10.4 32 64-95 75-106 (420)
470 CHL00059 atpA ATP synthase CF1 42.9 28 0.00062 35.8 3.9 43 44-94 199-241 (485)
471 PLN02550 threonine dehydratase 42.8 2.4E+02 0.0052 29.9 10.8 103 64-180 160-264 (591)
472 PRK11199 tyrA bifunctional cho 42.6 24 0.00051 34.8 3.2 25 70-94 107-131 (374)
473 PRK13512 coenzyme A disulfide 42.5 42 0.00091 33.4 5.1 29 71-99 157-185 (438)
474 TIGR03452 mycothione_red mycot 42.5 48 0.001 33.3 5.5 56 44-99 133-206 (452)
475 PRK06936 type III secretion sy 42.3 28 0.00061 35.4 3.7 43 44-94 218-260 (439)
476 TIGR01124 ilvA_2Cterm threonin 42.2 2.4E+02 0.0052 29.1 10.5 101 68-180 71-172 (499)
477 PF13579 Glyco_trans_4_4: Glyc 42.2 32 0.00069 27.4 3.5 24 71-94 4-27 (160)
478 PRK04192 V-type ATP synthase s 42.1 21 0.00045 37.6 2.9 27 69-95 307-333 (586)
479 PF13450 NAD_binding_8: NAD(P) 42.1 52 0.0011 24.1 4.3 27 70-96 4-30 (68)
480 cd01134 V_A-ATPase_A V/A-type 42.1 23 0.0005 35.2 3.0 26 70-95 238-263 (369)
481 TIGR01421 gluta_reduc_1 glutat 41.9 49 0.0011 33.1 5.4 28 70-97 174-201 (450)
482 PF13344 Hydrolase_6: Haloacid 41.7 21 0.00045 28.4 2.3 27 61-88 32-58 (101)
483 PRK12390 1-aminocyclopropane-1 41.7 46 0.00099 32.1 5.0 26 69-94 76-101 (337)
484 PRK04346 tryptophan synthase s 41.6 33 0.00071 34.4 4.1 34 63-96 108-141 (397)
485 PRK00133 metG methionyl-tRNA s 41.1 34 0.00074 36.4 4.3 49 44-96 2-50 (673)
486 PLN02616 tetrahydrofolate dehy 40.9 96 0.0021 30.9 7.1 55 18-95 211-265 (364)
487 PRK11259 solA N-methyltryptoph 40.9 31 0.00067 32.9 3.7 24 71-94 12-35 (376)
488 TIGR00872 gnd_rel 6-phosphoglu 40.6 32 0.0007 32.5 3.7 25 70-94 8-32 (298)
489 PRK09281 F0F1 ATP synthase sub 40.6 43 0.00093 34.7 4.8 43 44-94 220-262 (502)
490 TIGR01316 gltA glutamate synth 40.3 49 0.0011 33.2 5.2 25 71-95 281-305 (449)
491 TIGR00507 aroE shikimate 5-deh 40.3 56 0.0012 30.4 5.2 24 70-93 125-148 (270)
492 PF03853 YjeF_N: YjeF-related 40.2 78 0.0017 27.4 5.8 34 44-92 26-59 (169)
493 PRK06912 acoL dihydrolipoamide 40.2 84 0.0018 31.4 6.8 30 70-99 178-207 (458)
494 TIGR00873 gnd 6-phosphoglucona 40.0 30 0.00065 35.3 3.6 25 70-94 7-31 (467)
495 PRK04965 NADH:flavorubredoxin 39.8 59 0.0013 31.4 5.5 28 70-97 149-176 (377)
496 PRK00025 lpxB lipid-A-disaccha 39.7 27 0.0006 33.3 3.1 34 44-92 2-35 (380)
497 COG2087 CobU Adenosyl cobinami 39.7 85 0.0019 28.0 5.9 33 44-94 1-34 (175)
498 PRK06249 2-dehydropantoate 2-r 39.6 35 0.00075 32.4 3.8 25 70-94 13-37 (313)
499 PRK06475 salicylate hydroxylas 39.4 53 0.0011 32.0 5.1 26 71-96 11-36 (400)
500 TIGR01274 ACC_deam 1-aminocycl 39.4 51 0.0011 31.8 5.0 26 69-94 75-100 (337)
No 1
>KOG2728 consensus Uncharacterized conserved protein with similarity to phosphopantothenoylcysteine synthetase/decarboxylase [General function prediction only]
Probab=100.00 E-value=2.6e-70 Score=495.63 Aligned_cols=298 Identities=46% Similarity=0.686 Sum_probs=265.1
Q ss_pred hhccCCCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEE
Q 021383 12 FFDSAPPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFL 91 (313)
Q Consensus 12 ff~~~~~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i 91 (313)
||..++.++++++....+++|+..+..+. ++|+||||||||.+||+.|+||||+|||+|+||++.||+|++.||.|||+
T Consensus 1 ~~~~~p~p~~~~d~~s~~~eFi~~q~s~~-~rrIVlVTSGGTtVPLE~ntVRFiDNFSaGtRGAaSAE~Fl~agYaVIFl 79 (302)
T KOG2728|consen 1 FFEMNPVPESLDDPGSLIEEFIKLQASLQ-GRRIVLVTSGGTTVPLEQNTVRFIDNFSAGTRGAASAEYFLAAGYAVIFL 79 (302)
T ss_pred CCCcCCCcccccchhHHHHHHHHHHhhcc-CceEEEEecCCeEeecccCceEeeeccCcCCccchhHHHHHhCCceEEEE
Confidence 78899999999988888999998765555 46799999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCccCCCCCcccchhhhccCCc---cEEeeCccHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHH
Q 021383 92 YRRGTCEPYCSSLPDDAFLECFEVTEES---AVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVS 168 (313)
Q Consensus 92 ~g~~s~~P~~~~~~~~~~~~~~~~~~~~---~v~v~~~~~~~m~~a~~~~~~~~~~~~l~~~~f~t~~dy~~~l~~i~~~ 168 (313)
||..|+.||.|++|.+.+.++++..+.. .|.-.+...+.+.++...|+.....++||++||+|+.||+++|+++|++
T Consensus 80 ~R~~Sl~Py~R~f~~~~~~~~l~~~g~~~~~~i~~~e~~~~vf~~~~~~~k~~~k~~~lL~vpFtT~~~Yl~~L~aiae~ 159 (302)
T KOG2728|consen 80 YRERSLFPYTRHFPGQTWFLFLRPSGSALSGLIEKEENALPVFAEALEKYKYAEKAGTLLYVPFTTLADYLWLLRAIAEA 159 (302)
T ss_pred eeccccccccccCCCchhhhhhccCCcccccceecCchhhHHHHHHHHHHHHHHhhCcEEEEecchHHHHHHHHHHHHHH
Confidence 9999999999999987888888776532 2333332234467777777766678999999999999999999999999
Q ss_pred hhhcCCcceeeeeeccCCCcCCccccccccccCCCCCceEEEEeCcchhHHhhcccCCCeEEEEEecccCchHHHHHHHH
Q 021383 169 SRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADM 248 (313)
Q Consensus 169 l~~~~~~d~~i~aAAVsDf~v~~~~~~~~KI~s~~~~l~l~L~~~PKiL~~i~~~~~p~~~lVgFKlEt~~e~li~~A~~ 248 (313)
|+.++...++++|||||||++|++.+++|||+|+++.+.|+|.++||+|+.++..|.|++++|+||||||+..||.+|++
T Consensus 160 Ln~~~sramfYLAAAVSDFyVP~~~mpeHKIqSg~~~l~i~l~~VPK~L~~Lv~~WaP~AfiiSFKLETDesiLi~KAr~ 239 (302)
T KOG2728|consen 160 LNPLGSRAMFYLAAAVSDFYVPESEMPEHKIQSGSGPLQITLKPVPKMLSPLVSDWAPKAFIISFKLETDESILINKARK 239 (302)
T ss_pred hccccchHHHHHHHHhcccccChhhcchhhcccCCCCceEEeccchHHHHHHHHhhCcceEEEEEEecCChHHHHHHHHH
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEecCCCCccEEEEEeCCCeeeecCCCCCChHHHHHHHHHHHHHHHHHHHHhcC
Q 021383 249 ARKKYGMHAVVANELLSRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRHSVYIKDSN 312 (313)
Q Consensus 249 kL~~~~~D~VVaN~l~~~~~~v~li~~~~~~~i~~~~k~~~~~ia~~i~~~l~~~~~~~~~~~~ 312 (313)
.|++|++++||||.|++|+.+|.+|+++....+.... ...-|++.|++++.++|.+||+++.
T Consensus 240 AL~kY~HqlVIAN~LsTRk~~V~fVt~~~~~~~~l~~--~~~~IE~~ii~~vv~rH~~~I~~a~ 301 (302)
T KOG2728|consen 240 ALEKYKHQLVIANLLSTRKSRVVFVTKNIVQWLELDK--APGAIEDSIIKLVVSRHKEFIDEAQ 301 (302)
T ss_pred HHHHhCceeeeeehhhhcceeEEEEecCcceeeeccc--ccchhHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999977554333221 1356999999999999999999864
No 2
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=100.00 E-value=1.5e-54 Score=431.71 Aligned_cols=230 Identities=23% Similarity=0.326 Sum_probs=192.5
Q ss_pred hhccCCCCCCHHHHHHHHHHHHhcc--CCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEE
Q 021383 12 FFDSAPPLNDRAAISQKLKEFIALN--SSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVI 89 (313)
Q Consensus 12 ff~~~~~~~~~~~I~~~v~~~l~~~--~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~ 89 (313)
+..+.|||++|++|+..+.+++... ++|.| |+||||+|||+|||| |||||||+|||+||++||++|+.+||+|+
T Consensus 225 g~~G~Grm~e~~~I~~~v~~~~~~~~~~~l~g--kkvLITaGpT~E~ID--pVR~ItN~SSGkmG~alA~aa~~~GA~Vt 300 (475)
T PRK13982 225 GEAGVGRMAEPLEIAAAAEALLRPPQPKPLAG--RRVLITAGPTHEPID--PVRYIANRSSGKQGFAIAAAAAAAGAEVT 300 (475)
T ss_pred CCcCCCCCCCHHHHHHHHHHHHhhccccccCC--CEEEEecCCccccCC--cceeeCCCCchHHHHHHHHHHHHCCCcEE
Confidence 5678899999999999999998653 47887 999999999999999 99999999999999999999999999999
Q ss_pred EEecCCCCCCccCCCCCcccchhhhccCCccEEeeCccHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHh
Q 021383 90 FLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSS 169 (313)
Q Consensus 90 ~i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~m~~a~~~~~~~~~~~~l~~~~f~t~~dy~~~l~~i~~~l 169 (313)
||+||.++.| | .. ...+.|++ +.+|.+++++.
T Consensus 301 lI~Gp~~~~~-----p--~~--------v~~i~V~t--a~eM~~av~~~------------------------------- 332 (475)
T PRK13982 301 LISGPVDLAD-----P--QG--------VKVIHVES--ARQMLAAVEAA------------------------------- 332 (475)
T ss_pred EEeCCcCCCC-----C--CC--------ceEEEecC--HHHHHHHHHhh-------------------------------
Confidence 9999987532 2 11 13455655 56666665431
Q ss_pred hhcCCcceeeeeeccCCCcCCccccccccccCCC-CCceEEEEeCcchhHHhhccc-CCCeEEEEEecccCchHHHHHHH
Q 021383 170 RSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGS-GPLDMQLLQVPKMLSVLRKEW-APMAFCISFKLETDAEILLEKAD 247 (313)
Q Consensus 170 ~~~~~~d~~i~aAAVsDf~v~~~~~~~~KI~s~~-~~l~l~L~~~PKiL~~i~~~~-~p~~~lVgFKlEt~~e~li~~A~ 247 (313)
. .+|++|||||||||++ ....++||||+. +.++|+|++|||||+.|++.+ .+.+++|||||||++ |+++|+
T Consensus 333 --~-~~Di~I~aAAVaDyrp--~~~~~~KiKk~~~~~~~L~L~~nPDIL~~l~~~~~~~~~~lVGFaaEt~~--l~~~A~ 405 (475)
T PRK13982 333 --L-PADIAIFAAAVADWRV--ATEGGQKLKKGAAGPPPLQLVENPDILATISKLAENRPPLVIGFAAETEH--LIDNAR 405 (475)
T ss_pred --C-CCCEEEEeccccceee--ccccccccCcCCCCCceeeeeeCcHHHHHHhhhcccCCCEEEEEccCchh--HHHHHH
Confidence 2 3699999999999995 577899999854 457899999999999999632 224689999999976 999999
Q ss_pred HHHHHcCCcEEEEecCCC-------CccEEEEEeCCCe----eeecCCCCCChHHHHHHHHHHHHHH
Q 021383 248 MARKKYGMHAVVANELLS-------RKEQVVVVTNNGK----IPVYRDKTSSDSDVEKPLTKLLVDR 303 (313)
Q Consensus 248 ~kL~~~~~D~VVaN~l~~-------~~~~v~li~~~~~----~~i~~~~k~~~~~ia~~i~~~l~~~ 303 (313)
+||++|||||||||+++. +.|+|+|++++|. +.++.++| .+||+.|++++.++
T Consensus 406 ~KL~~K~~D~IvaN~v~~~~~gfg~d~n~v~ii~~~g~~~~~~~~~~~sK---~~iA~~Il~~i~~~ 469 (475)
T PRK13982 406 AKLARKGCDWIVANDVSPATGVMGGDRNTVHLLSRDGDAEKVESWPVMTK---DEVATALVARIAST 469 (475)
T ss_pred HHHHHcCCCEEEEccCCcCCCCcCCCccEEEEEECCCCccceeEcCCCCH---HHHHHHHHHHHHHH
Confidence 999999999999999953 5799999999883 46666665 99999999999754
No 3
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=100.00 E-value=1.3e-53 Score=379.68 Aligned_cols=174 Identities=33% Similarity=0.496 Sum_probs=130.1
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCccCCCCCcccchhhhccCCccEEe
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQV 123 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v 123 (313)
|+||||||||+|||| |||||||+|||+||++||++|+++||+|+||||+.++.| | .++ ..+.|
T Consensus 4 k~vlITaG~T~E~iD--~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~-----p--~~~--------~~i~v 66 (185)
T PF04127_consen 4 KKVLITAGPTREPID--PVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP-----P--PGV--------KVIRV 66 (185)
T ss_dssp -EEEEEESB-EEESS--SSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-----------TTE--------EEEE-
T ss_pred CEEEEECCCccccCC--CceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc-----c--ccc--------eEEEe
Confidence 999999999999999 999999999999999999999999999999999976532 2 111 22333
Q ss_pred eCccHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHhhhcCCcceeeeeeccCCCcCCccccccccccC-C
Q 021383 124 CQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQS-G 202 (313)
Q Consensus 124 ~~~~~~~m~~a~~~~~~~~~~~~l~~~~f~t~~dy~~~l~~i~~~l~~~~~~d~~i~aAAVsDf~v~~~~~~~~KI~s-~ 202 (313)
+|.+||++.++.. .+.+|++|||||||||++ +...++||+| +
T Consensus 67 -----------------------------~sa~em~~~~~~~------~~~~Di~I~aAAVsDf~p--~~~~~~KIkK~~ 109 (185)
T PF04127_consen 67 -----------------------------ESAEEMLEAVKEL------LPSADIIIMAAAVSDFRP--EEPAEGKIKKSS 109 (185)
T ss_dssp -----------------------------SSHHHHHHHHHHH------GGGGSEEEE-SB--SEEE--SCHHSS-G---T
T ss_pred -----------------------------cchhhhhhhhccc------cCcceeEEEecchhheee--hhcccccccccc
Confidence 3444444333322 456799999999999995 6778999996 4
Q ss_pred CCCceEEEEeCcchhHHhhcccCCCeEEEEEecccCchHHHHHHHHHHHHcCCcEEEEecCCCC-------ccEEEEE
Q 021383 203 SGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLSR-------KEQVVVV 273 (313)
Q Consensus 203 ~~~l~l~L~~~PKiL~~i~~~~~p~~~lVgFKlEt~~e~li~~A~~kL~~~~~D~VVaN~l~~~-------~~~v~li 273 (313)
.+.++|+|.+|||||+.|++.|.|++++|||||||+ +++++|+++|++||||+||||+++.. .|+|+|+
T Consensus 110 ~~~l~l~L~~~pkIL~~l~~~~~~~~~lVGFkaEt~--~l~~~A~~kl~~k~~D~IVaN~~~~~~~gfg~~~n~~~ii 185 (185)
T PF04127_consen 110 GDELTLELKPTPKILAELRKNKKPNQFLVGFKAETE--ELIENAKEKLERKGADLIVANDLSQRGSGFGSDTNEVTII 185 (185)
T ss_dssp T-CEEEEEEE-GGHGCCHHHHCSTTTEEEEEEEESC--HHHHHHHHHHHHCT-SEEEEEEGCCCTSSSSSSEEEEEE-
T ss_pred CcceEEEEEeChHHHHHHHhcccCCcEEEEEEecCC--cHHHHHHHHhHhhCCCEEEEeCCCcCCCCcCCCceEEEEC
Confidence 567999999999999999878999999999999996 59999999999999999999999873 5888875
No 4
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=100.00 E-value=1.4e-50 Score=397.71 Aligned_cols=232 Identities=24% Similarity=0.331 Sum_probs=190.8
Q ss_pred hhhccCCCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEE
Q 021383 11 SFFDSAPPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIF 90 (313)
Q Consensus 11 ~ff~~~~~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~ 90 (313)
.+..+.|||++|++|+..+.+.+.. +++.| |+||||+|||+|||| |||||||+|||+||.++|++|+++||+|++
T Consensus 159 ~~~~g~gr~~~~~~I~~~~~~~~~~-~~l~g--k~vlITgG~T~E~ID--~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~ 233 (399)
T PRK05579 159 CGDVGPGRMAEPEEIVAAAERALSP-KDLAG--KRVLITAGPTREPID--PVRYITNRSSGKMGYALARAAARRGADVTL 233 (399)
T ss_pred CCCcCCCCCCCHHHHHHHHHHHhhh-cccCC--CEEEEeCCCcccccc--ceeeeccCCcchHHHHHHHHHHHCCCEEEE
Confidence 4556789999999999999998864 46877 999999999999999 999999999999999999999999999999
Q ss_pred EecCCCCCCccCCCCCcccchhhhccCCccEEeeCccHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHhh
Q 021383 91 LYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSR 170 (313)
Q Consensus 91 i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~m~~a~~~~~~~~~~~~l~~~~f~t~~dy~~~l~~i~~~l~ 170 (313)
++|+.+..| | ... ..+.|.+ ..+|.+++ + +
T Consensus 234 v~~~~~~~~-----~--~~~--------~~~dv~~--~~~~~~~v---------------------------~------~ 263 (399)
T PRK05579 234 VSGPVNLPT-----P--AGV--------KRIDVES--AQEMLDAV---------------------------L------A 263 (399)
T ss_pred eCCCccccC-----C--CCc--------EEEccCC--HHHHHHHH---------------------------H------H
Confidence 999865322 1 000 1122322 33333333 2 1
Q ss_pred hcCCcceeeeeeccCCCcCCccccccccccCCCCCceEEEEeCcchhHHhhcccCCCeEEEEEecccCchHHHHHHHHHH
Q 021383 171 SLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMAR 250 (313)
Q Consensus 171 ~~~~~d~~i~aAAVsDf~v~~~~~~~~KI~s~~~~l~l~L~~~PKiL~~i~~~~~p~~~lVgFKlEt~~e~li~~A~~kL 250 (313)
.++..|++||+|||+||++ ....++||||+.+.++|+|.+|||||+.|++.+.+.+++|||||||++ ++++|++||
T Consensus 264 ~~~~~DilI~~Aav~d~~~--~~~~~~Kikk~~~~~~l~L~~~pdIl~~l~~~~~~~~~~VGFaaEt~~--~~~~A~~kl 339 (399)
T PRK05579 264 ALPQADIFIMAAAVADYRP--ATVAEGKIKKGEGELTLELVPNPDILAEVAALKDKRPFVVGFAAETGD--VLEYARAKL 339 (399)
T ss_pred hcCCCCEEEEccccccccc--ccccccCccCCCCCceEEEEeCcHHHHHHHhccCCCCEEEEEccCCch--HHHHHHHHH
Confidence 2567899999999999994 678899999975569999999999999999765332489999999987 899999999
Q ss_pred HHcCCcEEEEecCC------CCccEEEEEeCCCee-eecCCCCCChHHHHHHHHHHHHHHH
Q 021383 251 KKYGMHAVVANELL------SRKEQVVVVTNNGKI-PVYRDKTSSDSDVEKPLTKLLVDRH 304 (313)
Q Consensus 251 ~~~~~D~VVaN~l~------~~~~~v~li~~~~~~-~i~~~~k~~~~~ia~~i~~~l~~~~ 304 (313)
++|||||||||+++ ++.|+++|++++|.. .++.++| .+||++|++++.++.
T Consensus 340 ~~k~~D~ivaN~i~~~~~fg~~~n~~~ii~~~~~~~~~~~~~K---~~iA~~i~~~i~~~~ 397 (399)
T PRK05579 340 KRKGLDLIVANDVSAGGGFGSDDNEVTLIWSDGGEVKLPLMSK---LELARRLLDEIAERL 397 (399)
T ss_pred HHcCCeEEEEecCCcCCCcCCCceEEEEEECCCcEEEcCCCCH---HHHHHHHHHHHHHHh
Confidence 99999999999994 368999999998754 6776665 999999999997654
No 5
>PRK09620 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-50 Score=370.66 Aligned_cols=206 Identities=26% Similarity=0.332 Sum_probs=162.5
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCccCCCCCcccchhhhccCCccEEe
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQV 123 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v 123 (313)
|+||||||||+|||| |||||||+|||+||++||++|+++||+|++|+|+.+..|.. ++. ....+
T Consensus 4 k~vlITaG~T~E~iD--~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~--~~~----------~~~~~-- 67 (229)
T PRK09620 4 KKVLITSGGCLEKWD--QVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPND--INN----------QLELH-- 67 (229)
T ss_pred CEEEEeCCCccCCcC--CeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcc--cCC----------ceeEE--
Confidence 999999999999999 99999999999999999999999999999999986533321 110 00112
Q ss_pred eCccHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHhhhcCCcceeeeeeccCCCcCCccccc--------
Q 021383 124 CQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMA-------- 195 (313)
Q Consensus 124 ~~~~~~~m~~a~~~~~~~~~~~~l~~~~f~t~~dy~~~l~~i~~~l~~~~~~d~~i~aAAVsDf~v~~~~~~-------- 195 (313)
+|++..|+.+.++.+ ++ ...+|++||+||||||+++ ...
T Consensus 68 ---------------------------~V~s~~d~~~~l~~~---~~-~~~~D~VIH~AAvsD~~~~--~~~~~~~~~~~ 114 (229)
T PRK09620 68 ---------------------------PFEGIIDLQDKMKSI---IT-HEKVDAVIMAAAGSDWVVD--KICDQEGNVLD 114 (229)
T ss_pred ---------------------------EEecHHHHHHHHHHH---hc-ccCCCEEEECccccceecc--ccccccccccc
Confidence 233433444333322 21 2367999999999999973 322
Q ss_pred -cccccCCCCCceEEEEeCcchhHHhhcccCCCeEEEEEecccCc--hHHHHHHHHHHHHcCCcEEEEecCCC---CccE
Q 021383 196 -EHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDA--EILLEKADMARKKYGMHAVVANELLS---RKEQ 269 (313)
Q Consensus 196 -~~KI~s~~~~l~l~L~~~PKiL~~i~~~~~p~~~lVgFKlEt~~--e~li~~A~~kL~~~~~D~VVaN~l~~---~~~~ 269 (313)
++||+|+ +.++|+|++|||||+.+++ |.|++++|||||||+. ++|+++|++||++|+|||||||+++. ..++
T Consensus 115 ~~~Ki~~~-~~~~l~L~~~pdIl~~l~~-~~~~~~~vGFkaEt~~~~~~l~~~A~~kl~~k~~D~ivaN~~~~~~g~~~~ 192 (229)
T PRK09620 115 MNGKISSD-IAPIIHFQKAPKVLKQIKQ-WDPETVLVGFKLESDVNEEELFERAKNRMEEAKASVMIANSPHSLYSRGAM 192 (229)
T ss_pred ccCCCcCC-CCCeEEEEECcHHHHHHHh-hCCCCEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEECCcccccCCCcE
Confidence 3599885 4689999999999999985 6688999999999985 78999999999999999999999963 3468
Q ss_pred EEEEeCCCeeeecCCCCCChHHHHHHHHHHHHHHH
Q 021383 270 VVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVDRH 304 (313)
Q Consensus 270 v~li~~~~~~~i~~~~k~~~~~ia~~i~~~l~~~~ 304 (313)
++|+++++.. .+.++| .+||+.|++++..+.
T Consensus 193 ~~ii~~~~~~-~~~~~K---~~iA~~i~~~i~~~~ 223 (229)
T PRK09620 193 HYVIGQDGKG-QLCNGK---DETAKEIVKRLEVLC 223 (229)
T ss_pred EEEEeCCCcc-ccCCCH---HHHHHHHHHHHHHhh
Confidence 9999999863 354554 999999999998753
No 6
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=100.00 E-value=8.7e-50 Score=390.86 Aligned_cols=228 Identities=24% Similarity=0.324 Sum_probs=189.7
Q ss_pred ccCCCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 14 DSAPPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 14 ~~~~~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
.+.++|+++++|+..+.+.+...+++.| |+||||+|||+|||| |||||||+|||+||.++|++|+.+||+|++++|
T Consensus 158 ~g~g~~~~~~~i~~~v~~~~~~~~~~~~--~~vlit~g~t~E~iD--~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g 233 (390)
T TIGR00521 158 EGKGRLAEPETIVKAAEREFSPKEDLEG--KRVLITAGPTREPID--PVRFISNLSSGKMGLALAEAAYKRGADVTLITG 233 (390)
T ss_pred ccCCCCCCHHHHHHHHHHHHhhccccCC--ceEEEecCCccCCCC--ceeeecCCCcchHHHHHHHHHHHCCCEEEEeCC
Confidence 5668999999999999998875456877 999999999999999 999999999999999999999999999999999
Q ss_pred CCCCCCccCCCCCcccchhhhccCCccEEeeCccHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHhhhcC
Q 021383 94 RGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLG 173 (313)
Q Consensus 94 ~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~m~~a~~~~~~~~~~~~l~~~~f~t~~dy~~~l~~i~~~l~~~~ 173 (313)
+.+..| | .+. ..+.|.+ .++|.+++ .+. ..+
T Consensus 234 ~~~~~~-----~--~~~--------~~~~v~~--~~~~~~~~------------------------------~~~--~~~ 264 (390)
T TIGR00521 234 PVSLLT-----P--PGV--------KSIKVST--AEEMLEAA------------------------------LNE--LAK 264 (390)
T ss_pred CCccCC-----C--CCc--------EEEEecc--HHHHHHHH------------------------------HHh--hcc
Confidence 876432 2 111 1233332 33332222 111 146
Q ss_pred CcceeeeeeccCCCcCCccccccccccCCCCCceEEEEeCcchhHHhhcccCCCeEEEEEecccCchHHHHHHHHHHHHc
Q 021383 174 PCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKY 253 (313)
Q Consensus 174 ~~d~~i~aAAVsDf~v~~~~~~~~KI~s~~~~l~l~L~~~PKiL~~i~~~~~p~~~lVgFKlEt~~e~li~~A~~kL~~~ 253 (313)
..|++|+|||||||++ ....++||+|..+.++|+|.+|||||+.|++.| |++++|||||||+.+ ++++|++||++|
T Consensus 265 ~~D~~i~~Aavsd~~~--~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~-~~~~lvgF~aEt~~~-l~~~A~~kl~~k 340 (390)
T TIGR00521 265 DFDIFISAAAVADFKP--KTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK-KHQVIVGFKAETNDD-LIKYAKEKLKKK 340 (390)
T ss_pred cCCEEEEccccccccc--cccccccccccCCceeEEEEeCcHHHHHHHhhC-CCcEEEEEEcCCCcH-HHHHHHHHHHHc
Confidence 7899999999999995 467889999965679999999999999999765 578999999999866 999999999999
Q ss_pred CCcEEEEecCCC-----CccEEEEEeCCCeeeecCCCCCChHHHHHHHHHHHH
Q 021383 254 GMHAVVANELLS-----RKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLV 301 (313)
Q Consensus 254 ~~D~VVaN~l~~-----~~~~v~li~~~~~~~i~~~~k~~~~~ia~~i~~~l~ 301 (313)
+||+||||+++. +.|+++|++++|.+.++.++| .+||++|+++++
T Consensus 341 ~~D~ivaN~i~~~~fg~~~n~~~li~~~~~~~~~~~~K---~~iA~~i~~~~~ 390 (390)
T TIGR00521 341 NLDMIVANDVSQRGFGSDENEVYIFSKHGHKELPLMSK---LEVAERILDEIK 390 (390)
T ss_pred CCCEEEEccCCccccCCCCcEEEEEECCCeEEeCCCCH---HHHHHHHHHHhC
Confidence 999999999975 689999999998777877776 999999999873
No 7
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=100.00 E-value=1.5e-47 Score=350.98 Aligned_cols=203 Identities=24% Similarity=0.338 Sum_probs=161.9
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCccCCCCCcccchhhhccCCccEEe
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQV 123 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v 123 (313)
++||||||||+|||| |||||||+|||+||.+||++|+++||+|++++|+....|.. + . +...+.+
T Consensus 1 ~~vliT~G~T~e~iD--~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~~~---~--~--------~v~~i~v 65 (229)
T PRK06732 1 MKILITSGGTTEPID--SVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVKPEP---H--P--------NLSIIEI 65 (229)
T ss_pred CEEEEcCCCcccccC--CceeecCccchHHHHHHHHHHHhCCCEEEEEECcccccCCC---C--C--------CeEEEEE
Confidence 489999999999999 99999999999999999999999999999999875543321 1 0 0112222
Q ss_pred eCccHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHhhhcCCcceeeeeeccCCCcCCcc-----------
Q 021383 124 CQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWK----------- 192 (313)
Q Consensus 124 ~~~~~~~m~~a~~~~~~~~~~~~l~~~~f~t~~dy~~~l~~i~~~l~~~~~~d~~i~aAAVsDf~v~~~----------- 192 (313)
.. ..+|.+++. . ..+..|++||+||++||.+...
T Consensus 66 ~s--~~~m~~~l~------------------------------~---~~~~~DivIh~AAvsd~~~~~~~~~~~~~~~~~ 110 (229)
T PRK06732 66 EN--VDDLLETLE------------------------------P---LVKDHDVLIHSMAVSDYTPVYMTDLEEVSASDN 110 (229)
T ss_pred ec--HHHHHHHHH------------------------------H---HhcCCCEEEeCCccCCceehhhhhhhhhhhhhh
Confidence 22 233333321 1 1356899999999999974210
Q ss_pred -------ccccccccCCCCCceEEEEeCcchhHHhhcccCCCeEEEEEecccCc--hHHHHHHHHHHHHcCCcEEEEecC
Q 021383 193 -------SMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDA--EILLEKADMARKKYGMHAVVANEL 263 (313)
Q Consensus 193 -------~~~~~KI~s~~~~l~l~L~~~PKiL~~i~~~~~p~~~lVgFKlEt~~--e~li~~A~~kL~~~~~D~VVaN~l 263 (313)
..+++||+|+.+.++|+|.+|||||+.+++ |.|++++|||||||+. ++|+++|++||++|||||||||++
T Consensus 111 v~~~~~~~~~~~Ki~~~~~~~~l~l~~~p~il~~~~~-~~~~~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~vvaN~~ 189 (229)
T PRK06732 111 LNEFLTKQNTEAKISSASDYQVLFLKKTPKVISYVKK-WNPNITLVGFKLLVNVSKEELIKVARASLIKNQADYILANDL 189 (229)
T ss_pred hhhhhccccccCCccCCCCceEEEEEEChHHHHHHHh-hCCCcEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 125899999866799999999999999995 6788999999999973 779999999999999999999999
Q ss_pred CC---CccEEEEEeCCCeeeecCCCCCChHHHHHHHHHHHHH
Q 021383 264 LS---RKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVD 302 (313)
Q Consensus 264 ~~---~~~~v~li~~~~~~~i~~~~k~~~~~ia~~i~~~l~~ 302 (313)
+. ..|+++|+++++. .+.++ |.+||+.|++++..
T Consensus 190 ~~~~~~~~~~~~i~~~~~--~~~~~---K~~~a~~i~~~~~~ 226 (229)
T PRK06732 190 TDISADQHKALLVSKNEV--YTAQT---KEEIADLLLERIEK 226 (229)
T ss_pred cccCCCCcEEEEEeCCCe--eeCCC---HHHHHHHHHHHHHh
Confidence 75 6899999999985 34445 49999999999865
No 8
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=100.00 E-value=5e-45 Score=333.89 Aligned_cols=201 Identities=25% Similarity=0.364 Sum_probs=159.1
Q ss_pred eEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCccCCCCCcccchhhhccCCccEEee
Q 021383 45 VACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVC 124 (313)
Q Consensus 45 ~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v~ 124 (313)
+||||||||+|||| |||||||+|||.+|.+||++|+++||+|++++++.++.|. + .. .+.+.
T Consensus 1 ~vliT~G~T~e~iD--~VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~l~~~----~-~~-----------~~Dv~ 62 (227)
T TIGR02114 1 KILVTSGGTSEPID--SVRSITNHSTGHLGKIITETFLSAGHEVTLVTTKRALKPE----P-HP-----------NLSIR 62 (227)
T ss_pred CEEEccCCccCCCC--CceeecCCcccHHHHHHHHHHHHCCCEEEEEcChhhcccc----c-CC-----------cceee
Confidence 59999999999999 9999999999999999999999999999999876443221 0 00 01121
Q ss_pred CccHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHhhhcCCcceeeeeeccCCCcCCcccc----------
Q 021383 125 QPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSM---------- 194 (313)
Q Consensus 125 ~~~~~~m~~a~~~~~~~~~~~~l~~~~f~t~~dy~~~l~~i~~~l~~~~~~d~~i~aAAVsDf~v~~~~~---------- 194 (313)
. ..+..+|++.+. +.++..|++||+||++||.+- ...
T Consensus 63 d-----------------------------~~s~~~l~~~v~---~~~g~iDiLVnnAgv~d~~~~-~~~s~e~~~~~~~ 109 (227)
T TIGR02114 63 E-----------------------------IETTKDLLITLK---ELVQEHDILIHSMAVSDYTPV-YMTDLEQVQASDN 109 (227)
T ss_pred c-----------------------------HHHHHHHHHHHH---HHcCCCCEEEECCEeccccch-hhCCHHHHhhhcc
Confidence 1 111122333322 235678999999999999852 222
Q ss_pred ---------ccccccCCCCCceEEEEeCcchhHHhhcccCCCeEEEEEecccCc--hHHHHHHHHHHHHcCCcEEEEecC
Q 021383 195 ---------AEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDA--EILLEKADMARKKYGMHAVVANEL 263 (313)
Q Consensus 195 ---------~~~KI~s~~~~l~l~L~~~PKiL~~i~~~~~p~~~lVgFKlEt~~--e~li~~A~~kL~~~~~D~VVaN~l 263 (313)
.++||+|+.+.++|+|++|||||+.+++ |.|++++||||||++. ++|+++|++||++|||||||||++
T Consensus 110 ~~~~~~~~~~~~Ki~~~~~~~~l~l~~~p~il~~~~~-~~~~~~~vgF~~e~~~~~~~l~~~a~~kl~~~~~d~ivaN~~ 188 (227)
T TIGR02114 110 LNEFLSKQNHEAKISSTSEYQVLFLKKTPKVISLVKE-WNPQIHLVGFKLLVNVTQEELVKVARASLIKNQADFILANDL 188 (227)
T ss_pred hhhhhccccccCCcccCCCceeEEEEEChHHHHHHHh-hCCCcEEEEEEeccCCCHHHHHHHHHHHHHHcCCCEEEEcch
Confidence 4799999766799999999999999995 6688899999999873 789999999999999999999999
Q ss_pred C---CCccEEEEEeCCCeeeecCCCCCChHHHHHHHHHHHHH
Q 021383 264 L---SRKEQVVVVTNNGKIPVYRDKTSSDSDVEKPLTKLLVD 302 (313)
Q Consensus 264 ~---~~~~~v~li~~~~~~~i~~~~k~~~~~ia~~i~~~l~~ 302 (313)
+ ...|+++|+++++. ++.++ |.+||+.|++++..
T Consensus 189 ~~~~~~~~~~~li~~~~~--~~~~~---k~~ia~~i~~~~~~ 225 (227)
T TIGR02114 189 TDISADQHKALLIEKNQV--QTAQT---KEEIAELLYEKVQK 225 (227)
T ss_pred hhcCCCCceEEEEeCCCe--eecCC---HHHHHHHHHHHHHh
Confidence 4 47899999999983 44445 49999999999853
No 9
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=100.00 E-value=2.2e-41 Score=331.80 Aligned_cols=229 Identities=22% Similarity=0.329 Sum_probs=196.3
Q ss_pred ccCCCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 14 DSAPPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 14 ~~~~~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
.+.++++++++|+..+.+++... ++.| |+||||+|||+|+|| |||||||+|||+||++||++++++||+|++++|
T Consensus 157 ~g~g~~~e~~~Iv~~~~~~~~~~-~l~g--k~Vlit~G~t~E~id--pvr~itn~ssGk~g~alA~a~~~~GA~V~lv~g 231 (392)
T COG0452 157 VGDGRLAEPEEIVEAALALLKTP-DLKG--KKVLITAGPTREYID--PVRFISNRSSGKMGFALAAAAKRRGASVTLVSG 231 (392)
T ss_pred cccccCCCHHHHHHHHHhhcccc-cccC--cEEEecCCCCccCCc--cceeeeccccccccHHHHHHHHHcCCceEEecC
Confidence 35689999999999999999875 6777 999999999999999 999999999999999999999999999999999
Q ss_pred CCCCCCccCCCCCcccchhhhccCCccEEeeCccHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHhhhcC
Q 021383 94 RGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLG 173 (313)
Q Consensus 94 ~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~m~~a~~~~~~~~~~~~l~~~~f~t~~dy~~~l~~i~~~l~~~~ 173 (313)
+.++.+ | .+. ..+.|.+ +.+|..++. ....
T Consensus 232 ~~~~~~-----p--~~v--------~~v~v~s--a~em~~av~---------------------------------~~~~ 261 (392)
T COG0452 232 PTSLKI-----P--AGV--------EVVKVES--AEEMLNAVL---------------------------------EAAL 261 (392)
T ss_pred CCcCCC-----C--Ccc--------eeeeeee--HHHHHHHHH---------------------------------hccc
Confidence 876532 1 111 1344554 566666653 1245
Q ss_pred CcceeeeeeccCCCcCCccccccccccCCCCCceEEEEeCcchhHHhhcccCCCeEEEEEecccCchHHHHHHHHHHHHc
Q 021383 174 PCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVLRKEWAPMAFCISFKLETDAEILLEKADMARKKY 253 (313)
Q Consensus 174 ~~d~~i~aAAVsDf~v~~~~~~~~KI~s~~~~l~l~L~~~PKiL~~i~~~~~p~~~lVgFKlEt~~e~li~~A~~kL~~~ 253 (313)
.+|++|++|||+||++ ....++||+|..+.+.|+|.+|||||..++..+.+..++|||++||+. ++++|+++|+++
T Consensus 262 ~~d~~i~~aAvaD~~~--~~~~~~Kikk~~~~~~l~l~~n~dil~~~~~~~~~~~~~Vgfaaet~~--~~~~a~~kl~~k 337 (392)
T COG0452 262 PADIFISAAAVADYRP--KWVAEAKIKKQGEPFKLELVPNPDILASVARDYPKKNILVGFAAETGD--IVEYAREKLERK 337 (392)
T ss_pred ccCEEEEecccccccc--ccccccceeecCCcceEEeccChhHHHHHHhhccCCCeEEEEeccchH--HHHHHHHhhhhc
Confidence 7899999999999995 578899999977679999999999999999876433389999999998 999999999999
Q ss_pred CCcEEEEecCC-----CCccEEEEEeCCCe-eeecCCCCCChHHHHHHHHHHHHHHH
Q 021383 254 GMHAVVANELL-----SRKEQVVVVTNNGK-IPVYRDKTSSDSDVEKPLTKLLVDRH 304 (313)
Q Consensus 254 ~~D~VVaN~l~-----~~~~~v~li~~~~~-~~i~~~~k~~~~~ia~~i~~~l~~~~ 304 (313)
++|+||+|+++ ++.|++++++++|. ..++.++| .++|+.|++++.+++
T Consensus 338 ~~D~i~aNdv~~~~fg~d~n~~~~~~~d~~~~~~~~~~k---~~~a~~i~~~i~~~~ 391 (392)
T COG0452 338 NLDLIVANDVSEIGFGSDDNEVRIIDKDGEDVELPEMSK---EELAERILDEIAELL 391 (392)
T ss_pred CCCeEEeccccccCCCCCccceEEecCCCCeeeccccCH---HHHHHHHHHHHHHhh
Confidence 99999999998 46899999999877 68888776 999999999998765
No 10
>PRK05854 short chain dehydrogenase; Provisional
Probab=97.26 E-value=0.0018 Score=61.51 Aligned_cols=37 Identities=35% Similarity=0.419 Sum_probs=31.2
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++.| |++|||+| ++| .|.++|++|+++|+.|+++.+.
T Consensus 11 ~l~g--k~~lITGa-----------------s~G-IG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 11 DLSG--KRAVVTGA-----------------SDG-LGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred ccCC--CEEEEeCC-----------------CCh-HHHHHHHHHHHCCCEEEEEeCC
Confidence 4556 99999988 444 5999999999999999998774
No 11
>PRK06138 short chain dehydrogenase; Provisional
Probab=97.18 E-value=0.004 Score=55.98 Aligned_cols=36 Identities=31% Similarity=0.377 Sum_probs=31.4
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| ||..|..+|+.|+++|+.|+++.+.
T Consensus 3 ~~~--k~~lItG~------------------sg~iG~~la~~l~~~G~~v~~~~r~ 38 (252)
T PRK06138 3 LAG--RVAIVTGA------------------GSGIGRATAKLFAREGARVVVADRD 38 (252)
T ss_pred CCC--cEEEEeCC------------------CchHHHHHHHHHHHCCCeEEEecCC
Confidence 445 89999998 5778999999999999999999875
No 12
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=97.17 E-value=0.0029 Score=57.66 Aligned_cols=45 Identities=29% Similarity=0.272 Sum_probs=35.2
Q ss_pred HHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 30 KEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 30 ~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.+|+....++.+ |+||||+| ||-.|.++|+.|++.|+.|+++.+.
T Consensus 4 ~~~~~~~~~l~~--k~vlItGa------------------s~gIG~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 4 DKFSMDFFSLDG--KVAIVTGG------------------NTGLGQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred hhhccccccCCC--CEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 355544334666 99999998 4556999999999999999998765
No 13
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=97.14 E-value=0.0051 Score=55.84 Aligned_cols=36 Identities=39% Similarity=0.332 Sum_probs=31.0
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |+||||+| +|..|.++|+.|+++|+.|+++.+.
T Consensus 8 ~~~--k~vlItGa------------------~g~iG~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 8 LTG--RRALVTGS------------------SQGIGYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred CCC--CEEEEECC------------------cchHHHHHHHHHHHcCCEEEEEeCC
Confidence 555 99999998 5677999999999999999987764
No 14
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=97.13 E-value=0.0029 Score=57.88 Aligned_cols=37 Identities=19% Similarity=0.376 Sum_probs=30.9
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++++ |+||||+| | |-.|.++|+.|+++|+.|++++++
T Consensus 5 ~l~~--k~vlItGa-----------------s-~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 5 EMKG--KTLVISGG-----------------T-RGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred ccCC--CEEEEeCC-----------------C-chHHHHHHHHHHHCCCEEEEEcCC
Confidence 4556 99999987 4 445999999999999999988754
No 15
>PRK07063 short chain dehydrogenase; Provisional
Probab=97.13 E-value=0.005 Score=56.05 Aligned_cols=36 Identities=31% Similarity=0.294 Sum_probs=30.6
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |+||||+| | |-.|.++|+.|+++|+.|+++.+.
T Consensus 5 l~~--k~vlVtGa-----------------s-~gIG~~~a~~l~~~G~~vv~~~r~ 40 (260)
T PRK07063 5 LAG--KVALVTGA-----------------A-QGIGAAIARAFAREGAAVALADLD 40 (260)
T ss_pred cCC--CEEEEECC-----------------C-chHHHHHHHHHHHCCCEEEEEeCC
Confidence 455 89999988 4 556999999999999999998764
No 16
>PRK06194 hypothetical protein; Provisional
Probab=97.12 E-value=0.0052 Score=56.76 Aligned_cols=33 Identities=18% Similarity=0.217 Sum_probs=29.3
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| +|-.|.++|+.|+++|+.|+++.+.
T Consensus 7 k~vlVtGa------------------sggIG~~la~~l~~~G~~V~~~~r~ 39 (287)
T PRK06194 7 KVAVITGA------------------ASGFGLAFARIGAALGMKLVLADVQ 39 (287)
T ss_pred CEEEEeCC------------------ccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 89999998 4667999999999999999988764
No 17
>PRK05876 short chain dehydrogenase; Provisional
Probab=97.10 E-value=0.006 Score=56.75 Aligned_cols=36 Identities=31% Similarity=0.376 Sum_probs=30.2
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.| |++|||+| |+| .|.++|+.|+++|+.|+++.++
T Consensus 4 ~~~--k~vlVTGa-----------------s~g-IG~ala~~La~~G~~Vv~~~r~ 39 (275)
T PRK05876 4 FPG--RGAVITGG-----------------ASG-IGLATGTEFARRGARVVLGDVD 39 (275)
T ss_pred cCC--CEEEEeCC-----------------Cch-HHHHHHHHHHHCCCEEEEEeCC
Confidence 455 89999998 544 5999999999999999887754
No 18
>PRK05867 short chain dehydrogenase; Provisional
Probab=97.10 E-value=0.006 Score=55.40 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=30.4
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| + |-.|.++|+.|+++|+.|+++.+.
T Consensus 7 ~~~--k~vlVtGa-----------------s-~gIG~~ia~~l~~~G~~V~~~~r~ 42 (253)
T PRK05867 7 LHG--KRALITGA-----------------S-TGIGKRVALAYVEAGAQVAIAARH 42 (253)
T ss_pred CCC--CEEEEECC-----------------C-chHHHHHHHHHHHCCCEEEEEcCC
Confidence 445 99999998 4 456999999999999999888764
No 19
>PRK12937 short chain dehydrogenase; Provisional
Probab=97.09 E-value=0.0058 Score=54.72 Aligned_cols=33 Identities=39% Similarity=0.431 Sum_probs=29.2
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| +|..|.++|++|+++|+.|+++.++
T Consensus 6 ~~vlItG~------------------~~~iG~~la~~l~~~g~~v~~~~~~ 38 (245)
T PRK12937 6 KVAIVTGA------------------SRGIGAAIARRLAADGFAVAVNYAG 38 (245)
T ss_pred CEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEecCC
Confidence 89999998 4667999999999999999888764
No 20
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=97.08 E-value=0.0061 Score=55.44 Aligned_cols=36 Identities=36% Similarity=0.393 Sum_probs=31.0
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| +|-.|.++|+.|+++|+.|+++.+.
T Consensus 10 ~~~--k~ilItGa------------------~g~IG~~la~~l~~~G~~V~~~~r~ 45 (259)
T PRK08213 10 LSG--KTALVTGG------------------SRGLGLQIAEALGEAGARVVLSARK 45 (259)
T ss_pred cCC--CEEEEECC------------------CchHHHHHHHHHHHcCCEEEEEeCC
Confidence 445 99999987 4677999999999999999988874
No 21
>PRK07774 short chain dehydrogenase; Provisional
Probab=97.08 E-value=0.0059 Score=54.94 Aligned_cols=33 Identities=33% Similarity=0.388 Sum_probs=29.7
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| ||-.|.++|++|+.+|+.|+++.+.
T Consensus 7 k~vlItGa------------------sg~iG~~la~~l~~~g~~vi~~~r~ 39 (250)
T PRK07774 7 KVAIVTGA------------------AGGIGQAYAEALAREGASVVVADIN 39 (250)
T ss_pred CEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 88999987 5677999999999999999999875
No 22
>PRK07035 short chain dehydrogenase; Provisional
Probab=97.07 E-value=0.0067 Score=54.86 Aligned_cols=36 Identities=33% Similarity=0.385 Sum_probs=30.6
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |+||||+| ||..|.++|+.|+++|+.|+++.+.
T Consensus 6 l~~--k~vlItGa------------------s~gIG~~l~~~l~~~G~~Vi~~~r~ 41 (252)
T PRK07035 6 LTG--KIALVTGA------------------SRGIGEAIAKLLAQQGAHVIVSSRK 41 (252)
T ss_pred cCC--CEEEEECC------------------CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 445 89999987 4566999999999999999998864
No 23
>PRK07814 short chain dehydrogenase; Provisional
Probab=97.07 E-value=0.006 Score=55.91 Aligned_cols=36 Identities=28% Similarity=0.265 Sum_probs=31.0
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ +++|||+| ||-.|.++|+.|+++|++|+++.+.
T Consensus 8 ~~~--~~vlItGa------------------sggIG~~~a~~l~~~G~~Vi~~~r~ 43 (263)
T PRK07814 8 LDD--QVAVVTGA------------------GRGLGAAIALAFAEAGADVLIAART 43 (263)
T ss_pred CCC--CEEEEECC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 445 89999998 4667999999999999999998874
No 24
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.07 E-value=0.0072 Score=54.68 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=29.5
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| ||-.|.++|+.|+++|+.|+++.+.
T Consensus 8 ~~vlItGa------------------sg~iG~~la~~l~~~G~~v~~~~r~ 40 (262)
T PRK13394 8 KTAVVTGA------------------ASGIGKEIALELARAGAAVAIADLN 40 (262)
T ss_pred CEEEEECC------------------CChHHHHHHHHHHHCCCeEEEEeCC
Confidence 89999987 5778999999999999999988764
No 25
>PRK08628 short chain dehydrogenase; Provisional
Probab=97.07 E-value=0.0051 Score=55.85 Aligned_cols=37 Identities=27% Similarity=0.305 Sum_probs=31.7
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++.| |++|||+| ||..|.++|+.|+++|+.|+++.++
T Consensus 4 ~l~~--~~ilItGa------------------sggiG~~la~~l~~~G~~v~~~~r~ 40 (258)
T PRK08628 4 NLKD--KVVIVTGG------------------ASGIGAAISLRLAEEGAIPVIFGRS 40 (258)
T ss_pred CcCC--CEEEEeCC------------------CChHHHHHHHHHHHcCCcEEEEcCC
Confidence 3556 89999997 4668999999999999999998765
No 26
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.05 E-value=0.008 Score=54.14 Aligned_cols=33 Identities=27% Similarity=0.225 Sum_probs=29.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|.++|++|+.+|+.|+++.+.
T Consensus 5 ~~vlItG~------------------sg~iG~~la~~l~~~g~~v~~~~r~ 37 (258)
T PRK12429 5 KVALVTGA------------------ASGIGLEIALALAKEGAKVVIADLN 37 (258)
T ss_pred CEEEEECC------------------CchHHHHHHHHHHHCCCeEEEEeCC
Confidence 89999998 5677999999999999999998875
No 27
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=97.04 E-value=0.0077 Score=53.90 Aligned_cols=33 Identities=33% Similarity=0.245 Sum_probs=29.7
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|.++|++|+++|+.|+.+.++
T Consensus 7 ~~ilItGa------------------sg~iG~~l~~~l~~~g~~V~~~~r~ 39 (251)
T PRK12826 7 RVALVTGA------------------ARGIGRAIAVRLAADGAEVIVVDIC 39 (251)
T ss_pred CEEEEcCC------------------CCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 88999987 5777999999999999999999875
No 28
>PRK07062 short chain dehydrogenase; Provisional
Probab=97.04 E-value=0.0045 Score=56.49 Aligned_cols=37 Identities=41% Similarity=0.476 Sum_probs=31.2
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++.| |++|||+| ||..|.++|+.|+.+|+.|+++.+.
T Consensus 5 ~l~~--k~~lItGa------------------s~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 5 QLEG--RVAVVTGG------------------SSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred ccCC--CEEEEeCC------------------CchHHHHHHHHHHHCCCeEEEEeCC
Confidence 3555 99999998 4556999999999999999988874
No 29
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=97.04 E-value=0.0072 Score=55.35 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=30.4
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++.+ |++|||+| +|-.|.++|++|+.+|+.|+++.+.
T Consensus 7 ~~~~--k~~lItGa------------------~~~iG~~ia~~l~~~G~~vv~~~~~ 43 (265)
T PRK07097 7 SLKG--KIALITGA------------------SYGIGFAIAKAYAKAGATIVFNDIN 43 (265)
T ss_pred CCCC--CEEEEeCC------------------CchHHHHHHHHHHHCCCeEEEEeCC
Confidence 3445 89999988 3556999999999999999888653
No 30
>PRK07478 short chain dehydrogenase; Provisional
Probab=97.04 E-value=0.0068 Score=54.96 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=29.3
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| ||-.|.++|+.|+++|+.|+++.+.
T Consensus 7 k~~lItGa------------------s~giG~~ia~~l~~~G~~v~~~~r~ 39 (254)
T PRK07478 7 KVAIITGA------------------SSGIGRAAAKLFAREGAKVVVGARR 39 (254)
T ss_pred CEEEEeCC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 89999988 4567999999999999999998864
No 31
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=97.02 E-value=0.0059 Score=56.62 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=30.5
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCc-cHHHHHHHHHHHHCCCEEEEEec
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSS-GHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SS-G~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
+.| |++|||+| |+ +-.|.++|+.|++.||.|++.++
T Consensus 4 l~~--k~~lITGa-----------------s~~~GIG~aia~~la~~G~~vil~~r 40 (262)
T PRK07984 4 LSG--KRILVTGV-----------------ASKLSIAYGIAQAMHREGAELAFTYQ 40 (262)
T ss_pred cCC--CEEEEeCC-----------------CCCccHHHHHHHHHHHCCCEEEEEec
Confidence 445 89999999 65 36799999999999999987765
No 32
>PRK08643 acetoin reductase; Validated
Probab=97.00 E-value=0.0077 Score=54.58 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=28.7
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| ||..|.++|++|+++|+.|+++.++
T Consensus 3 k~~lItGa------------------s~giG~~la~~l~~~G~~v~~~~r~ 35 (256)
T PRK08643 3 KVALVTGA------------------GQGIGFAIAKRLVEDGFKVAIVDYN 35 (256)
T ss_pred CEEEEECC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 78999987 4557999999999999999988764
No 33
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.96 E-value=0.0074 Score=55.57 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=30.5
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
+.+ |+||||+|+ |++-.|.++|+.|+++|+.|++.++
T Consensus 4 ~~~--k~~lITGa~----------------~~~GIG~a~a~~l~~~G~~v~~~~~ 40 (261)
T PRK08690 4 LQG--KKILITGMI----------------SERSIAYGIAKACREQGAELAFTYV 40 (261)
T ss_pred cCC--cEEEEECCC----------------CCCcHHHHHHHHHHHCCCEEEEEcC
Confidence 455 899999981 2556799999999999999988754
No 34
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.95 E-value=0.0085 Score=54.97 Aligned_cols=38 Identities=11% Similarity=0.112 Sum_probs=32.3
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCc-cHHHHHHHHHHHHCCCEEEEEecC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSS-GHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SS-G~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++.| |++|||+| || +-.|.++|+.|++.|+.|++..+.
T Consensus 7 ~~~~--k~~lItGa-----------------s~g~GIG~a~a~~la~~G~~v~l~~r~ 45 (258)
T PRK07533 7 PLAG--KRGLVVGI-----------------ANEQSIAWGCARAFRALGAELAVTYLN 45 (258)
T ss_pred ccCC--CEEEEECC-----------------CCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 3555 99999999 76 378999999999999999888764
No 35
>PRK06197 short chain dehydrogenase; Provisional
Probab=96.94 E-value=0.0054 Score=57.63 Aligned_cols=37 Identities=32% Similarity=0.419 Sum_probs=31.1
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++.+ |+||||+| ||-.|.++|+.|+++|+.|+++.+.
T Consensus 13 ~~~~--k~vlItGa------------------s~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 13 DQSG--RVAVVTGA------------------NTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred cCCC--CEEEEcCC------------------CCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 3455 99999988 4556999999999999999988764
No 36
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.94 E-value=0.011 Score=52.93 Aligned_cols=33 Identities=30% Similarity=0.252 Sum_probs=29.7
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+++|||+| ||..|.++|++|+.+|+.|+++.++
T Consensus 8 ~~vlVtG~------------------sg~iG~~l~~~L~~~G~~Vi~~~r~ 40 (239)
T PRK07666 8 KNALITGA------------------GRGIGRAVAIALAKEGVNVGLLART 40 (239)
T ss_pred CEEEEEcC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 88999987 5778999999999999999999875
No 37
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=96.94 E-value=0.0039 Score=56.64 Aligned_cols=36 Identities=22% Similarity=0.265 Sum_probs=31.0
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| ||-.|.++|+.|+++|+.|+++.+.
T Consensus 6 ~~~--k~vlVtGa------------------s~gIG~~la~~l~~~G~~v~~~~r~ 41 (260)
T PRK12823 6 FAG--KVVVVTGA------------------AQGIGRGVALRAAAEGARVVLVDRS 41 (260)
T ss_pred cCC--CEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEeCc
Confidence 555 99999998 4667999999999999999988764
No 38
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=96.94 E-value=0.0082 Score=55.17 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=30.3
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCC-ccHHHHHHHHHHHHCCCEEEEEec
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFS-SGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~S-SG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
+.| |++|||+| | |+-.|.++|+.|++.|+.|++..+
T Consensus 4 l~~--k~~lItGa-----------------s~~~GIG~aia~~la~~G~~v~~~~~ 40 (258)
T PRK07370 4 LTG--KKALVTGI-----------------ANNRSIAWGIAQQLHAAGAELGITYL 40 (258)
T ss_pred cCC--cEEEEeCC-----------------CCCCchHHHHHHHHHHCCCEEEEEec
Confidence 445 99999998 4 456799999999999999988764
No 39
>PRK06114 short chain dehydrogenase; Provisional
Probab=96.93 E-value=0.012 Score=53.57 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=30.7
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| | |-.|.++|+.|++.|++|+++.+.
T Consensus 6 ~~~--k~~lVtG~-----------------s-~gIG~~ia~~l~~~G~~v~~~~r~ 41 (254)
T PRK06114 6 LDG--QVAFVTGA-----------------G-SGIGQRIAIGLAQAGADVALFDLR 41 (254)
T ss_pred CCC--CEEEEECC-----------------C-chHHHHHHHHHHHCCCEEEEEeCC
Confidence 555 89999988 4 457999999999999999998864
No 40
>PRK06398 aldose dehydrogenase; Validated
Probab=96.93 E-value=0.0043 Score=56.86 Aligned_cols=36 Identities=33% Similarity=0.312 Sum_probs=30.8
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.| |+||||+| | |..|.++|+.|++.|+.|+++.+.
T Consensus 4 l~g--k~vlItGa-----------------s-~gIG~~ia~~l~~~G~~Vi~~~r~ 39 (258)
T PRK06398 4 LKD--KVAIVTGG-----------------S-QGIGKAVVNRLKEEGSNVINFDIK 39 (258)
T ss_pred CCC--CEEEEECC-----------------C-chHHHHHHHHHHHCCCeEEEEeCC
Confidence 555 99999998 3 556999999999999999988764
No 41
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.92 E-value=0.013 Score=52.20 Aligned_cols=33 Identities=36% Similarity=0.405 Sum_probs=29.3
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|.++|+.|+++||.|+++.+.
T Consensus 6 ~~vlItG~------------------sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 6 KVALVTGA------------------SRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 88999887 5778999999999999999888764
No 42
>PRK06128 oxidoreductase; Provisional
Probab=96.92 E-value=0.009 Score=56.12 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=29.9
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |+||||+| ||-.|.++|+.|+++|++|++.+.+
T Consensus 53 l~~--k~vlITGa------------------s~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 53 LQG--RKALITGA------------------DSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred cCC--CEEEEecC------------------CCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 545 89999998 3456999999999999999887653
No 43
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.92 E-value=0.0088 Score=55.03 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=30.7
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCcc-HHHHHHHHHHHHCCCEEEEEec
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSG-HRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG-~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
+.| |++|||+| |+| -.|.++|+.|+++||.|++..+
T Consensus 6 ~~~--k~~lITGa-----------------s~~~GIG~a~a~~la~~G~~v~~~~r 42 (260)
T PRK06603 6 LQG--KKGLITGI-----------------ANNMSISWAIAQLAKKHGAELWFTYQ 42 (260)
T ss_pred cCC--cEEEEECC-----------------CCCcchHHHHHHHHHHcCCEEEEEeC
Confidence 445 99999999 775 4799999999999999988765
No 44
>PRK08589 short chain dehydrogenase; Validated
Probab=96.91 E-value=0.0091 Score=55.15 Aligned_cols=36 Identities=28% Similarity=0.215 Sum_probs=30.7
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| | |-.|.++|+.|+++|+.|+++.++
T Consensus 4 l~~--k~vlItGa-----------------s-~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 4 LEN--KVAVITGA-----------------S-TGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCC--CEEEEECC-----------------C-chHHHHHHHHHHHCCCEEEEEeCc
Confidence 445 89999998 4 456999999999999999999764
No 45
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.91 E-value=0.013 Score=52.47 Aligned_cols=33 Identities=33% Similarity=0.266 Sum_probs=29.0
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| +|..|.++|+.|+++|+.|+++.+.
T Consensus 8 ~~vlItGa------------------~g~iG~~la~~l~~~G~~v~~~~r~ 40 (250)
T PRK12939 8 KRALVTGA------------------ARGLGAAFAEALAEAGATVAFNDGL 40 (250)
T ss_pred CEEEEeCC------------------CChHHHHHHHHHHHcCCEEEEEeCC
Confidence 89999987 5778999999999999999888653
No 46
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=96.90 E-value=0.0082 Score=54.05 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=30.6
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.| |+||||+| | |-.|.++|++|+++|+.|+++.+.
T Consensus 3 ~~~--k~vlItGa-----------------s-~gIG~~ia~~l~~~G~~vi~~~r~ 38 (248)
T TIGR01832 3 LEG--KVALVTGA-----------------N-TGLGQGIAVGLAEAGADIVGAGRS 38 (248)
T ss_pred CCC--CEEEEECC-----------------C-chHHHHHHHHHHHCCCEEEEEcCc
Confidence 445 99999998 4 557999999999999999998763
No 47
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=96.90 E-value=0.011 Score=53.53 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=30.8
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| ||..|.++|+.|++.|+.|+++.+.
T Consensus 7 l~~--k~~lItGa------------------s~giG~~ia~~L~~~G~~vvl~~r~ 42 (254)
T PRK08085 7 LAG--KNILITGS------------------AQGIGFLLATGLAEYGAEIIINDIT 42 (254)
T ss_pred CCC--CEEEEECC------------------CChHHHHHHHHHHHcCCEEEEEcCC
Confidence 445 89999998 4567999999999999999988764
No 48
>PRK08226 short chain dehydrogenase; Provisional
Probab=96.89 E-value=0.011 Score=53.83 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=30.9
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| ||-.|.++|+.|+++|+.|+++.++
T Consensus 4 ~~~--~~~lItG~------------------s~giG~~la~~l~~~G~~Vv~~~r~ 39 (263)
T PRK08226 4 LTG--KTALITGA------------------LQGIGEGIARVFARHGANLILLDIS 39 (263)
T ss_pred CCC--CEEEEeCC------------------CChHHHHHHHHHHHCCCEEEEecCC
Confidence 445 89999998 4566999999999999999998764
No 49
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.89 E-value=0.0074 Score=55.08 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=29.7
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
+.+ |++|||+| |+| .|.++|+.|+++|+.|+++.+
T Consensus 6 l~~--k~~lItGa-----------------s~g-IG~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 6 LNG--KVAIITGC-----------------NTG-LGQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred cCC--CEEEEeCC-----------------Cch-HHHHHHHHHHHCCCEEEEecC
Confidence 445 99999998 444 599999999999999988765
No 50
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.89 E-value=0.0092 Score=55.49 Aligned_cols=33 Identities=9% Similarity=0.093 Sum_probs=29.1
Q ss_pred ceEEEecCCcccccCCCCeeeeccCC-ccHHHHHHHHHHHHCCCEEEEEec
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFS-SGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~S-SG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
|++|||+| | ++-.|.++|+.|++.|+.|+++++
T Consensus 11 k~~lItGa-----------------s~~~GIG~aia~~la~~G~~V~l~~r 44 (272)
T PRK08159 11 KRGLILGV-----------------ANNRSIAWGIAKACRAAGAELAFTYQ 44 (272)
T ss_pred CEEEEECC-----------------CCCCcHHHHHHHHHHHCCCEEEEEcC
Confidence 89999998 5 466799999999999999987765
No 51
>PRK06179 short chain dehydrogenase; Provisional
Probab=96.89 E-value=0.0082 Score=54.95 Aligned_cols=33 Identities=39% Similarity=0.479 Sum_probs=29.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++||||+| ||..|.++|++|+++|+.|+.+.+.
T Consensus 5 ~~vlVtGa------------------sg~iG~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 5 KVALVTGA------------------SSGIGRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred CEEEEecC------------------CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 78999988 5667999999999999999998875
No 52
>PRK08251 short chain dehydrogenase; Provisional
Probab=96.87 E-value=0.0075 Score=54.30 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=29.1
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| ||..|.++|+.|++.|+.|+++.+.
T Consensus 3 k~vlItGa------------------s~giG~~la~~l~~~g~~v~~~~r~ 35 (248)
T PRK08251 3 QKILITGA------------------SSGLGAGMAREFAAKGRDLALCARR 35 (248)
T ss_pred CEEEEECC------------------CCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 78999988 4677999999999999999988764
No 53
>PRK07791 short chain dehydrogenase; Provisional
Probab=96.87 E-value=0.011 Score=55.24 Aligned_cols=36 Identities=28% Similarity=0.265 Sum_probs=30.4
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| |+| .|.++|+.|++.|+.|+++.+.
T Consensus 4 l~~--k~~lITGa-----------------s~G-IG~aia~~la~~G~~vii~~~~ 39 (286)
T PRK07791 4 LDG--RVVIVTGA-----------------GGG-IGRAHALAFAAEGARVVVNDIG 39 (286)
T ss_pred cCC--CEEEEECC-----------------Cch-HHHHHHHHHHHCCCEEEEeeCC
Confidence 445 99999999 555 5999999999999999988654
No 54
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=96.87 E-value=0.014 Score=52.79 Aligned_cols=37 Identities=30% Similarity=0.255 Sum_probs=31.7
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.+.+ |+||||+| +|..|.++|+.|+++|+.|+++.+.
T Consensus 8 ~~~~--k~ilItGa------------------s~~IG~~la~~l~~~G~~v~~~~r~ 44 (256)
T PRK06124 8 SLAG--QVALVTGS------------------ARGLGFEIARALAGAGAHVLVNGRN 44 (256)
T ss_pred CCCC--CEEEEECC------------------CchHHHHHHHHHHHcCCeEEEEeCC
Confidence 4556 99999998 4666999999999999999998874
No 55
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.86 E-value=0.011 Score=53.30 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=29.1
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|.++|+.|+++|++|+++.+.
T Consensus 3 k~vlItG~------------------sg~iG~~la~~L~~~g~~vi~~~r~ 35 (256)
T PRK12745 3 PVALVTGG------------------RRGIGLGIARALAAAGFDLAINDRP 35 (256)
T ss_pred cEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEecC
Confidence 78899987 6778999999999999999998764
No 56
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.85 E-value=0.016 Score=52.98 Aligned_cols=37 Identities=32% Similarity=0.382 Sum_probs=30.8
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCc-cHHHHHHHHHHHHCCCEEEEEec
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSS-GHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SS-G~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
++.| |+||||+| |. |-.|.++|++|+++|+.|++.++
T Consensus 3 ~l~~--k~vlVtGa-----------------s~~~giG~~~a~~l~~~G~~vi~~~~ 40 (256)
T PRK12859 3 QLKN--KVAVVTGV-----------------SRLDGIGAAICKELAEAGADIFFTYW 40 (256)
T ss_pred CcCC--cEEEEECC-----------------CCCCChHHHHHHHHHHCCCeEEEEec
Confidence 3566 99999998 52 46799999999999999988753
No 57
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=96.84 E-value=0.012 Score=52.79 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=28.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|.+|||+| ||..|.++|+.|+++|+.|+++++.
T Consensus 4 k~~lVtG~------------------s~giG~~~a~~l~~~G~~vv~~~~~ 36 (246)
T PRK12938 4 RIAYVTGG------------------MGGIGTSICQRLHKDGFKVVAGCGP 36 (246)
T ss_pred CEEEEECC------------------CChHHHHHHHHHHHcCCEEEEEcCC
Confidence 89999988 5677999999999999999887653
No 58
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.83 E-value=0.013 Score=52.46 Aligned_cols=33 Identities=27% Similarity=0.305 Sum_probs=30.0
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++||||+| ||..|.++|++|+++|++|+.+.++
T Consensus 6 ~~vlItGa------------------sg~iG~~l~~~l~~~G~~V~~~~r~ 38 (251)
T PRK07231 6 KVAIVTGA------------------SSGIGEGIARRFAAEGARVVVTDRN 38 (251)
T ss_pred cEEEEECC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 89999976 5788999999999999999999875
No 59
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.83 E-value=0.016 Score=51.50 Aligned_cols=33 Identities=27% Similarity=0.218 Sum_probs=29.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++||||+| ||..|..+|++|+++|+.|+++.+.
T Consensus 6 ~~ilItGa------------------sg~iG~~l~~~l~~~g~~v~~~~r~ 38 (246)
T PRK05653 6 KTALVTGA------------------SRGIGRAIALRLAADGAKVVIYDSN 38 (246)
T ss_pred CEEEEECC------------------CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 88999987 6788999999999999999988875
No 60
>PRK06196 oxidoreductase; Provisional
Probab=96.83 E-value=0.012 Score=55.61 Aligned_cols=37 Identities=38% Similarity=0.427 Sum_probs=31.7
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++.+ |+||||+| ||..|.++|++|+++|+.|+++.+.
T Consensus 23 ~l~~--k~vlITGa------------------sggIG~~~a~~L~~~G~~Vv~~~R~ 59 (315)
T PRK06196 23 DLSG--KTAIVTGG------------------YSGLGLETTRALAQAGAHVIVPARR 59 (315)
T ss_pred CCCC--CEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4556 99999998 4567999999999999999998764
No 61
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.83 E-value=0.0087 Score=54.73 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=31.6
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCc-cHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSS-GHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SS-G~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.| |++|||+| |+ +-.|.++|+.|+++|+.|++.++.
T Consensus 5 l~~--k~~lItGa-----------------s~~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 5 LSG--KKIVVMGV-----------------ANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred cCC--CEEEEeCC-----------------CCCCchHHHHHHHHHHCCCEEEEecCc
Confidence 555 99999999 53 567999999999999999988764
No 62
>PRK07109 short chain dehydrogenase; Provisional
Probab=96.82 E-value=0.015 Score=55.99 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=31.1
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.+.+ |+||||+| ||-.|.++|+.|+++|+.|+++.+.
T Consensus 5 ~l~~--k~vlITGa------------------s~gIG~~la~~la~~G~~Vvl~~R~ 41 (334)
T PRK07109 5 PIGR--QVVVITGA------------------SAGVGRATARAFARRGAKVVLLARG 41 (334)
T ss_pred CCCC--CEEEEECC------------------CCHHHHHHHHHHHHCCCEEEEEECC
Confidence 3445 89999988 4556999999999999999998864
No 63
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.81 E-value=0.012 Score=56.66 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=30.4
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |+||||+| | |-.|.++|+.|+++|+.|+++.+.
T Consensus 5 l~~--k~vlITGA-----------------s-~GIG~aia~~la~~G~~Vvl~~R~ 40 (330)
T PRK06139 5 LHG--AVVVITGA-----------------S-SGIGQATAEAFARRGARLVLAARD 40 (330)
T ss_pred CCC--CEEEEcCC-----------------C-CHHHHHHHHHHHHCCCEEEEEECC
Confidence 445 89999988 4 456999999999999999988764
No 64
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=96.80 E-value=0.011 Score=54.02 Aligned_cols=33 Identities=36% Similarity=0.429 Sum_probs=28.9
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| |+ -.|.++|+.|+++|+.|+++.+.
T Consensus 7 k~vlVtGa-----------------s~-gIG~~ia~~l~~~G~~V~~~~r~ 39 (263)
T PRK06200 7 QVALITGG-----------------GS-GIGRALVERFLAEGARVAVLERS 39 (263)
T ss_pred CEEEEeCC-----------------Cc-hHHHHHHHHHHHCCCEEEEEeCC
Confidence 89999998 44 45999999999999999988764
No 65
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=96.79 E-value=0.0076 Score=55.09 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=29.0
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| | |-.|.++|+.|++.|+.|+++.+.
T Consensus 6 k~vlItGa-----------------s-~gIG~~ia~~l~~~G~~V~~~~r~ 38 (262)
T TIGR03325 6 EVVLVTGG-----------------A-SGLGRAIVDRFVAEGARVAVLDKS 38 (262)
T ss_pred cEEEEECC-----------------C-ChHHHHHHHHHHHCCCEEEEEeCC
Confidence 89999988 4 457999999999999999988764
No 66
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=96.78 E-value=0.0078 Score=56.11 Aligned_cols=35 Identities=37% Similarity=0.518 Sum_probs=31.0
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
|.||||+- |||. |.++|+.|...||.|++..|...
T Consensus 7 kv~lITGA-----------------SSGi-G~A~A~~l~~~G~~vvl~aRR~d 41 (246)
T COG4221 7 KVALITGA-----------------SSGI-GEATARALAEAGAKVVLAARREE 41 (246)
T ss_pred cEEEEecC-----------------cchH-HHHHHHHHHHCCCeEEEEeccHH
Confidence 78888876 8997 99999999999999999998643
No 67
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.78 E-value=0.017 Score=54.37 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=29.2
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| | |-.|.++|+.|+++|++|+++.+.
T Consensus 41 k~vlItGa-----------------s-ggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 41 KRILLTGA-----------------S-SGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred CEEEEeCC-----------------C-cHHHHHHHHHHHHCCCEEEEEECC
Confidence 89999998 4 556999999999999999998875
No 68
>PRK07890 short chain dehydrogenase; Provisional
Probab=96.77 E-value=0.016 Score=52.29 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=28.9
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||-.|.++|++|+.+|+.|+++.+.
T Consensus 6 k~vlItGa------------------~~~IG~~la~~l~~~G~~V~~~~r~ 38 (258)
T PRK07890 6 KVVVVSGV------------------GPGLGRTLAVRAARAGADVVLAART 38 (258)
T ss_pred CEEEEECC------------------CCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 89999998 4556999999999999999888763
No 69
>PRK07576 short chain dehydrogenase; Provisional
Probab=96.77 E-value=0.016 Score=53.27 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=31.0
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| ||..|.++|+.|+.+|+.|+++.+.
T Consensus 7 ~~~--k~ilItGa------------------sggIG~~la~~l~~~G~~V~~~~r~ 42 (264)
T PRK07576 7 FAG--KNVVVVGG------------------TSGINLGIAQAFARAGANVAVASRS 42 (264)
T ss_pred CCC--CEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 445 89999987 5667999999999999999999864
No 70
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.77 E-value=0.018 Score=51.83 Aligned_cols=32 Identities=34% Similarity=0.412 Sum_probs=27.9
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
++||||+| ||..|.++|+.|+++|+.|+++..
T Consensus 5 ~~vlItGa------------------~g~iG~~~a~~l~~~g~~v~~~~~ 36 (250)
T PRK08063 5 KVALVTGS------------------SRGIGKAIALRLAEEGYDIAVNYA 36 (250)
T ss_pred CEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEcC
Confidence 89999998 577799999999999999987543
No 71
>PRK06949 short chain dehydrogenase; Provisional
Probab=96.76 E-value=0.018 Score=52.10 Aligned_cols=36 Identities=36% Similarity=0.422 Sum_probs=31.3
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |+||||+| ||..|.++|+.|++.|+.|+.+.+.
T Consensus 7 ~~~--k~ilItGa------------------sg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 7 LEG--KVALVTGA------------------SSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CCC--CEEEEECC------------------CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 445 99999998 5677999999999999999988774
No 72
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.76 E-value=0.011 Score=54.26 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=31.4
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCC-ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFS-SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~S-SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.| |++|||+| | |+-.|.++|+.|+++|+.|+++.+.
T Consensus 5 ~~~--k~~lItGa-----------------~~s~GIG~aia~~la~~G~~v~~~~r~ 42 (257)
T PRK08594 5 LEG--KTYVVMGV-----------------ANKRSIAWGIARSLHNAGAKLVFTYAG 42 (257)
T ss_pred cCC--CEEEEECC-----------------CCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence 445 99999999 5 3667999999999999999988653
No 73
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=96.76 E-value=0.016 Score=52.88 Aligned_cols=37 Identities=30% Similarity=0.352 Sum_probs=31.2
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++.+ |++|||+| +|..|.++|+.|+++|+.|+++++.
T Consensus 4 ~~~~--k~~lItGa------------------~~gIG~~ia~~l~~~G~~vvi~~~~ 40 (261)
T PRK08936 4 DLEG--KVVVITGG------------------STGLGRAMAVRFGKEKAKVVINYRS 40 (261)
T ss_pred CCCC--CEEEEeCC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 3556 99999998 4566999999999999999887764
No 74
>PRK08265 short chain dehydrogenase; Provisional
Probab=96.75 E-value=0.0096 Score=54.56 Aligned_cols=36 Identities=33% Similarity=0.383 Sum_probs=30.8
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| ||..|.++|+.|+++|+.|+++.+.
T Consensus 4 ~~~--k~vlItGa------------------s~gIG~~ia~~l~~~G~~V~~~~r~ 39 (261)
T PRK08265 4 LAG--KVAIVTGG------------------ATLIGAAVARALVAAGARVAIVDID 39 (261)
T ss_pred CCC--CEEEEECC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 445 89999988 4567999999999999999998764
No 75
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=96.75 E-value=0.018 Score=48.52 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=26.9
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
|.||||+| | |..|.++|+.|+++|+.++++.+..
T Consensus 1 k~~lItGa-----------------~-~giG~~~a~~l~~~g~~~v~~~~r~ 34 (167)
T PF00106_consen 1 KTVLITGA-----------------S-SGIGRALARALARRGARVVILTSRS 34 (167)
T ss_dssp EEEEEETT-----------------T-SHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred CEEEEECC-----------------C-CHHHHHHHHHHHhcCceEEEEeeec
Confidence 67899988 4 5569999999999988766666543
No 76
>PRK06841 short chain dehydrogenase; Provisional
Probab=96.75 E-value=0.014 Score=52.84 Aligned_cols=36 Identities=39% Similarity=0.439 Sum_probs=31.4
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |+||||+| ||..|.++|+.|+++|+.|+++.+.
T Consensus 13 ~~~--k~vlItGa------------------s~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 13 LSG--KVAVVTGG------------------ASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred CCC--CEEEEECC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 455 89999987 5778999999999999999988874
No 77
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=96.74 E-value=0.017 Score=51.88 Aligned_cols=33 Identities=24% Similarity=0.153 Sum_probs=29.2
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|.++|++|+++|+.|+++.+.
T Consensus 2 ~~vlItGa------------------~g~lG~~l~~~l~~~g~~v~~~~r~ 34 (255)
T TIGR01963 2 KTALVTGA------------------ASGIGLAIALALAAAGANVVVNDLG 34 (255)
T ss_pred CEEEEcCC------------------cchHHHHHHHHHHHCCCEEEEEeCC
Confidence 67888876 5788999999999999999999875
No 78
>PRK12743 oxidoreductase; Provisional
Probab=96.73 E-value=0.016 Score=52.82 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=28.3
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| |+| .|.++|+.|+++|+.|+++.+.
T Consensus 3 k~vlItGa-----------------s~g-iG~~~a~~l~~~G~~V~~~~~~ 35 (256)
T PRK12743 3 QVAIVTAS-----------------DSG-IGKACALLLAQQGFDIGITWHS 35 (256)
T ss_pred CEEEEECC-----------------Cch-HHHHHHHHHHHCCCEEEEEeCC
Confidence 78999998 544 7999999999999999888653
No 79
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.73 E-value=0.0078 Score=57.35 Aligned_cols=36 Identities=36% Similarity=0.507 Sum_probs=32.0
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.| |+|+||+= |||. |.++|.+++++|+.++++.|.
T Consensus 10 ~~~--kvVvITGA-----------------SsGI-G~~lA~~la~~G~~l~lvar~ 45 (282)
T KOG1205|consen 10 LAG--KVVLITGA-----------------SSGI-GEALAYELAKRGAKLVLVARR 45 (282)
T ss_pred hCC--CEEEEeCC-----------------CcHH-HHHHHHHHHhCCCceEEeehh
Confidence 445 99999986 8997 999999999999999999985
No 80
>PRK08303 short chain dehydrogenase; Provisional
Probab=96.72 E-value=0.017 Score=54.97 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=31.6
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.| |++|||+| |+| .|.++|++|++.|+.|+++++.
T Consensus 6 l~~--k~~lITGg-----------------s~G-IG~aia~~la~~G~~Vv~~~r~ 41 (305)
T PRK08303 6 LRG--KVALVAGA-----------------TRG-AGRGIAVELGAAGATVYVTGRS 41 (305)
T ss_pred CCC--CEEEEeCC-----------------Cch-HHHHHHHHHHHCCCEEEEEecc
Confidence 555 99999999 666 6999999999999999998875
No 81
>PRK05872 short chain dehydrogenase; Provisional
Probab=96.72 E-value=0.01 Score=55.80 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=31.0
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++.| |+||||+| | |-.|.++|+.|+++|+.|+++.+.
T Consensus 6 ~l~g--k~vlItGa-----------------s-~gIG~~ia~~l~~~G~~V~~~~r~ 42 (296)
T PRK05872 6 SLAG--KVVVVTGA-----------------A-RGIGAELARRLHARGAKLALVDLE 42 (296)
T ss_pred CCCC--CEEEEECC-----------------C-chHHHHHHHHHHHCCCEEEEEeCC
Confidence 4555 99999998 4 556999999999999999888764
No 82
>PRK12746 short chain dehydrogenase; Provisional
Probab=96.72 E-value=0.019 Score=51.84 Aligned_cols=35 Identities=34% Similarity=0.325 Sum_probs=29.5
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
+.+ ++||||+| ||..|.++|++|+++|+.|+++.+
T Consensus 4 ~~~--~~ilItGa------------------sg~iG~~la~~l~~~G~~v~i~~~ 38 (254)
T PRK12746 4 LDG--KVALVTGA------------------SRGIGRAIAMRLANDGALVAIHYG 38 (254)
T ss_pred CCC--CEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEcC
Confidence 445 89999987 577899999999999999987654
No 83
>PRK09242 tropinone reductase; Provisional
Probab=96.71 E-value=0.022 Score=51.72 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=30.8
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| +|-.|.++|+.|+++|++|+++.+.
T Consensus 7 ~~~--k~~lItGa------------------~~gIG~~~a~~l~~~G~~v~~~~r~ 42 (257)
T PRK09242 7 LDG--QTALITGA------------------SKGIGLAIAREFLGLGADVLIVARD 42 (257)
T ss_pred cCC--CEEEEeCC------------------CchHHHHHHHHHHHcCCEEEEEeCC
Confidence 445 89999987 4667999999999999999999864
No 84
>PRK08339 short chain dehydrogenase; Provisional
Probab=96.71 E-value=0.017 Score=53.15 Aligned_cols=37 Identities=35% Similarity=0.467 Sum_probs=30.9
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++.| |++|||+| |+| .|.++|+.|+++|+.|+++.+.
T Consensus 5 ~l~~--k~~lItGa-----------------s~g-IG~aia~~l~~~G~~V~~~~r~ 41 (263)
T PRK08339 5 DLSG--KLAFTTAS-----------------SKG-IGFGVARVLARAGADVILLSRN 41 (263)
T ss_pred CCCC--CEEEEeCC-----------------CCc-HHHHHHHHHHHCCCEEEEEeCC
Confidence 3556 99999998 544 5999999999999999988764
No 85
>PRK07024 short chain dehydrogenase; Provisional
Probab=96.70 E-value=0.014 Score=53.21 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=28.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++||||+| ||-.|.++|+.|+++|+.|+++.+.
T Consensus 3 ~~vlItGa------------------s~gIG~~la~~l~~~G~~v~~~~r~ 35 (257)
T PRK07024 3 LKVFITGA------------------SSGIGQALAREYARQGATLGLVARR 35 (257)
T ss_pred CEEEEEcC------------------CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 78999987 4567999999999999999988764
No 86
>PRK12827 short chain dehydrogenase; Provisional
Probab=96.70 E-value=0.02 Score=51.11 Aligned_cols=33 Identities=36% Similarity=0.363 Sum_probs=29.0
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+++|||+| ||-.|..+|++|+.+||+|+++.+.
T Consensus 7 ~~ilItGa------------------sg~iG~~la~~l~~~g~~v~~~~~~ 39 (249)
T PRK12827 7 RRVLITGG------------------SGGLGRAIAVRLAADGADVIVLDIH 39 (249)
T ss_pred CEEEEECC------------------CChHHHHHHHHHHHCCCeEEEEcCc
Confidence 88999987 4667999999999999999998763
No 87
>PRK06500 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.02 Score=51.39 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=29.6
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|.++|++|+++|+.|+++.++
T Consensus 7 k~vlItGa------------------sg~iG~~la~~l~~~g~~v~~~~r~ 39 (249)
T PRK06500 7 KTALITGG------------------TSGIGLETARQFLAEGARVAITGRD 39 (249)
T ss_pred CEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEecCC
Confidence 89999998 5778999999999999999988764
No 88
>PRK09072 short chain dehydrogenase; Provisional
Probab=96.68 E-value=0.02 Score=52.24 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=29.6
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++||||+| ||-.|.++|+.|+++|+.|+++.++
T Consensus 6 ~~vlItG~------------------s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGA------------------SGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEECC
Confidence 89999987 5667999999999999999999875
No 89
>PRK06172 short chain dehydrogenase; Provisional
Probab=96.68 E-value=0.02 Score=51.80 Aligned_cols=36 Identities=33% Similarity=0.394 Sum_probs=30.8
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |+||||+| ||-.|.++|+.|+++|++|+++.+.
T Consensus 5 l~~--k~ilItGa------------------s~~iG~~ia~~l~~~G~~v~~~~r~ 40 (253)
T PRK06172 5 FSG--KVALVTGG------------------AAGIGRATALAFAREGAKVVVADRD 40 (253)
T ss_pred CCC--CEEEEeCC------------------CchHHHHHHHHHHHcCCEEEEEeCC
Confidence 445 89999997 4667999999999999999998875
No 90
>PRK08862 short chain dehydrogenase; Provisional
Probab=96.68 E-value=0.019 Score=52.08 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=30.7
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++| |++|||+| |+|. |.++|+.|+++|+.|+++.+.
T Consensus 3 ~~~--k~~lVtGa-----------------s~GI-G~aia~~la~~G~~V~~~~r~ 38 (227)
T PRK08862 3 IKS--SIILITSA-----------------GSVL-GRTISCHFARLGATLILCDQD 38 (227)
T ss_pred CCC--eEEEEECC-----------------ccHH-HHHHHHHHHHCCCEEEEEcCC
Confidence 445 99999999 5655 999999999999999998764
No 91
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=96.67 E-value=0.021 Score=52.59 Aligned_cols=36 Identities=36% Similarity=0.530 Sum_probs=30.6
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| +|-.|.++|+.|+++|+.|+++.+.
T Consensus 8 ~~~--k~vlVtGa------------------s~giG~~ia~~l~~~G~~V~~~~r~ 43 (278)
T PRK08277 8 LKG--KVAVITGG------------------GGVLGGAMAKELARAGAKVAILDRN 43 (278)
T ss_pred cCC--CEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 445 89999998 4567999999999999999988764
No 92
>PRK09186 flagellin modification protein A; Provisional
Probab=96.67 E-value=0.012 Score=53.08 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=29.3
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|.++|+.|+++|+.|+++.+.
T Consensus 5 k~vlItGa------------------s~giG~~~a~~l~~~g~~v~~~~r~ 37 (256)
T PRK09186 5 KTILITGA------------------GGLIGSALVKAILEAGGIVIAADID 37 (256)
T ss_pred CEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEecC
Confidence 89999998 4567999999999999999998764
No 93
>PRK05717 oxidoreductase; Validated
Probab=96.67 E-value=0.0085 Score=54.44 Aligned_cols=36 Identities=31% Similarity=0.397 Sum_probs=31.2
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
.+.| |+||||+| ||..|.++|+.|+++|+.|+++.+
T Consensus 7 ~~~~--k~vlItG~------------------sg~IG~~~a~~l~~~g~~v~~~~~ 42 (255)
T PRK05717 7 GHNG--RVALVTGA------------------ARGIGLGIAAWLIAEGWQVVLADL 42 (255)
T ss_pred ccCC--CEEEEeCC------------------cchHHHHHHHHHHHcCCEEEEEcC
Confidence 4555 99999998 577799999999999999998864
No 94
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=96.66 E-value=0.021 Score=51.20 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=29.3
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| ||..|.++|++|+++|+.|+++.++
T Consensus 4 ~~ilItGa------------------s~~iG~~la~~l~~~g~~v~~~~r~ 36 (250)
T TIGR03206 4 KTAIVTGG------------------GGGIGGATCRRFAEEGAKVAVFDLN 36 (250)
T ss_pred CEEEEeCC------------------CChHHHHHHHHHHHCCCEEEEecCC
Confidence 89999987 5777999999999999999988764
No 95
>PRK08278 short chain dehydrogenase; Provisional
Probab=96.66 E-value=0.022 Score=52.65 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=29.6
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
|++|||+| | |-.|.++|+.|+++|+.|+++.++.
T Consensus 7 k~vlItGa-----------------s-~gIG~~ia~~l~~~G~~V~~~~r~~ 40 (273)
T PRK08278 7 KTLFITGA-----------------S-RGIGLAIALRAARDGANIVIAAKTA 40 (273)
T ss_pred CEEEEECC-----------------C-chHHHHHHHHHHHCCCEEEEEeccc
Confidence 89999998 4 5569999999999999999988753
No 96
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=96.65 E-value=0.013 Score=53.47 Aligned_cols=37 Identities=30% Similarity=0.359 Sum_probs=31.2
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
+.+ |++|||+| ||-.|.++|+.|+++|+.|+++.+..
T Consensus 7 l~~--k~vlItG~------------------s~gIG~~la~~l~~~G~~v~~~~~~~ 43 (266)
T PRK06171 7 LQG--KIIIVTGG------------------SSGIGLAIVKELLANGANVVNADIHG 43 (266)
T ss_pred CCC--CEEEEeCC------------------CChHHHHHHHHHHHCCCEEEEEeCCc
Confidence 445 89999987 45679999999999999999987653
No 97
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.64 E-value=0.023 Score=51.06 Aligned_cols=33 Identities=27% Similarity=0.296 Sum_probs=28.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++||||+| ||..|.++|++|+.+|+.|+++.++
T Consensus 7 ~~vlitGa------------------sg~iG~~l~~~l~~~g~~v~~~~~~ 39 (252)
T PRK06077 7 KVVVVTGS------------------GRGIGRAIAVRLAKEGSLVVVNAKK 39 (252)
T ss_pred cEEEEeCC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 89999998 4667999999999999999887654
No 98
>PRK07825 short chain dehydrogenase; Provisional
Probab=96.63 E-value=0.025 Score=51.92 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=29.0
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++||||+| ||..|.++|+.|+++|+.|+++.++
T Consensus 6 ~~ilVtGa------------------sggiG~~la~~l~~~G~~v~~~~r~ 38 (273)
T PRK07825 6 KVVAITGG------------------ARGIGLATARALAALGARVAIGDLD 38 (273)
T ss_pred CEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEECC
Confidence 89999987 4667999999999999999888764
No 99
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=96.61 E-value=0.011 Score=53.27 Aligned_cols=33 Identities=27% Similarity=0.336 Sum_probs=29.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| +|-.|.++|++|+++|+.|+++.+.
T Consensus 13 k~vlItG~------------------~g~iG~~la~~l~~~G~~Vi~~~r~ 45 (247)
T PRK08945 13 RIILVTGA------------------GDGIGREAALTYARHGATVILLGRT 45 (247)
T ss_pred CEEEEeCC------------------CchHHHHHHHHHHHCCCcEEEEeCC
Confidence 89999998 5778999999999999999988875
No 100
>PRK07856 short chain dehydrogenase; Provisional
Probab=96.61 E-value=0.014 Score=52.88 Aligned_cols=36 Identities=33% Similarity=0.452 Sum_probs=31.4
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| ||..|.++|+.|+++|+.|+++.+.
T Consensus 4 ~~~--k~~lItGa------------------s~gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 4 LTG--RVVLVTGG------------------TRGIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CCC--CEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 445 99999998 5667999999999999999999875
No 101
>PRK06523 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.013 Score=53.17 Aligned_cols=38 Identities=32% Similarity=0.397 Sum_probs=32.5
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
++.| |+||||+| ||..|.++|+.|+++|++|+++.+..
T Consensus 6 ~~~~--k~vlItGa------------------s~gIG~~ia~~l~~~G~~v~~~~r~~ 43 (260)
T PRK06523 6 ELAG--KRALVTGG------------------TKGIGAATVARLLEAGARVVTTARSR 43 (260)
T ss_pred CCCC--CEEEEECC------------------CCchhHHHHHHHHHCCCEEEEEeCCh
Confidence 4556 99999998 55679999999999999999998753
No 102
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.60 E-value=0.023 Score=52.38 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=30.6
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCC-ccHHHHHHHHHHHHCCCEEEEEec
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFS-SGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~S-SG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
+.+ |+||||+| | |+-.|.++|+.|++.|+.|+++.+
T Consensus 4 l~~--k~vlItGa-----------------s~~~GIG~a~a~~l~~~G~~v~~~~~ 40 (260)
T PRK06997 4 LAG--KRILITGL-----------------LSNRSIAYGIAKACKREGAELAFTYV 40 (260)
T ss_pred cCC--cEEEEeCC-----------------CCCCcHHHHHHHHHHHCCCeEEEEcc
Confidence 455 99999998 4 567899999999999999988754
No 103
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.59 E-value=0.029 Score=50.06 Aligned_cols=32 Identities=41% Similarity=0.393 Sum_probs=28.5
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEE-ec
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFL-YR 93 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i-~g 93 (313)
|++|||+| ||..|..+|+.|+++|+.|+++ .+
T Consensus 6 ~~ilI~Ga------------------sg~iG~~la~~l~~~g~~v~~~~~r 38 (247)
T PRK05565 6 KVAIVTGA------------------SGGIGRAIAELLAKEGAKVVIAYDI 38 (247)
T ss_pred CEEEEeCC------------------CcHHHHHHHHHHHHCCCEEEEEcCC
Confidence 89999987 5788999999999999999988 44
No 104
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=96.59 E-value=0.02 Score=52.06 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=29.5
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
+.| |.+|||+| +|-.|.++|++|++.|+.|+.+..
T Consensus 8 l~~--k~~lItG~------------------~~gIG~a~a~~l~~~G~~vv~~~~ 42 (253)
T PRK08993 8 LEG--KVAVVTGC------------------DTGLGQGMALGLAEAGCDIVGINI 42 (253)
T ss_pred CCC--CEEEEECC------------------CchHHHHHHHHHHHCCCEEEEecC
Confidence 555 89999998 456699999999999999987643
No 105
>PRK12829 short chain dehydrogenase; Provisional
Probab=96.59 E-value=0.023 Score=51.46 Aligned_cols=36 Identities=25% Similarity=0.183 Sum_probs=31.4
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+++ +++|||+| ||..|..+|+.|+.+|+.|+.+.++
T Consensus 9 ~~~--~~vlItGa------------------~g~iG~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 9 LDG--LRVLVTGG------------------ASGIGRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred cCC--CEEEEeCC------------------CCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 555 99999988 5778999999999999999888875
No 106
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.58 E-value=0.03 Score=49.71 Aligned_cols=34 Identities=35% Similarity=0.430 Sum_probs=29.5
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
|+||||+| ||..|.++|++|+.+|+.|+++.+..
T Consensus 7 ~~vlItGa------------------sg~iG~~l~~~l~~~g~~v~~~~~~~ 40 (249)
T PRK12825 7 RVALVTGA------------------ARGLGRAIALRLARAGADVVVHYRSD 40 (249)
T ss_pred CEEEEeCC------------------CchHHHHHHHHHHHCCCeEEEEeCCC
Confidence 78999987 67789999999999999998877653
No 107
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.58 E-value=0.022 Score=53.19 Aligned_cols=34 Identities=9% Similarity=0.131 Sum_probs=29.3
Q ss_pred ceEEEecCCcccccCCCCeeeeccCC-ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFS-SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~S-SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| | ++-.|.++|+.|++.|+.|++..+.
T Consensus 6 k~~lItGa-----------------s~~~GIG~aiA~~la~~G~~Vil~~r~ 40 (274)
T PRK08415 6 KKGLIVGV-----------------ANNKSIAYGIAKACFEQGAELAFTYLN 40 (274)
T ss_pred cEEEEECC-----------------CCCCCHHHHHHHHHHHCCCEEEEEecC
Confidence 99999999 5 3456999999999999999987653
No 108
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=96.56 E-value=0.022 Score=53.99 Aligned_cols=33 Identities=27% Similarity=0.364 Sum_probs=29.1
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||-.|.++|++|+++|+.|+++.+.
T Consensus 7 k~vlVTGa------------------s~gIG~~~a~~L~~~G~~V~~~~r~ 39 (322)
T PRK07453 7 GTVIITGA------------------SSGVGLYAAKALAKRGWHVIMACRN 39 (322)
T ss_pred CEEEEEcC------------------CChHHHHHHHHHHHCCCEEEEEECC
Confidence 89999988 4557999999999999999998764
No 109
>PLN02253 xanthoxin dehydrogenase
Probab=96.55 E-value=0.02 Score=52.81 Aligned_cols=36 Identities=28% Similarity=0.275 Sum_probs=30.7
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| +|-.|.++|++|+++|+.|+++.+.
T Consensus 16 l~~--k~~lItGa------------------s~gIG~~la~~l~~~G~~v~~~~~~ 51 (280)
T PLN02253 16 LLG--KVALVTGG------------------ATGIGESIVRLFHKHGAKVCIVDLQ 51 (280)
T ss_pred cCC--CEEEEECC------------------CchHHHHHHHHHHHcCCEEEEEeCC
Confidence 445 89999998 4667999999999999999998753
No 110
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.54 E-value=0.023 Score=52.81 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=30.3
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCc-cHHHHHHHHHHHHCCCEEEEEec
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSS-GHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SS-G~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
+.+ |++|||+| |+ +-.|.++|+.|++.||.|++..+
T Consensus 5 l~~--k~~lVTGa-----------------s~~~GIG~aiA~~la~~Ga~V~~~~r 41 (271)
T PRK06505 5 MQG--KRGLIMGV-----------------ANDHSIAWGIAKQLAAQGAELAFTYQ 41 (271)
T ss_pred cCC--CEEEEeCC-----------------CCCCcHHHHHHHHHHhCCCEEEEecC
Confidence 445 99999999 54 24699999999999999998765
No 111
>PRK05875 short chain dehydrogenase; Provisional
Probab=96.53 E-value=0.019 Score=52.66 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=30.9
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |+||||+| ||..|.++|+.|+++||.|+++.+.
T Consensus 5 ~~~--k~vlItGa------------------sg~IG~~la~~l~~~G~~V~~~~r~ 40 (276)
T PRK05875 5 FQD--RTYLVTGG------------------GSGIGKGVAAGLVAAGAAVMIVGRN 40 (276)
T ss_pred CCC--CEEEEECC------------------CcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 445 89999986 4668999999999999999998864
No 112
>PRK07985 oxidoreductase; Provisional
Probab=96.53 E-value=0.022 Score=53.50 Aligned_cols=35 Identities=29% Similarity=0.278 Sum_probs=29.6
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
+.+ |++|||+| ||-.|.++|+.|+++|+.|+++.+
T Consensus 47 ~~~--k~vlITGa------------------s~gIG~aia~~L~~~G~~Vi~~~~ 81 (294)
T PRK07985 47 LKD--RKALVTGG------------------DSGIGRAAAIAYAREGADVAISYL 81 (294)
T ss_pred cCC--CEEEEECC------------------CCcHHHHHHHHHHHCCCEEEEecC
Confidence 555 89999998 466799999999999999988654
No 113
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=96.53 E-value=0.018 Score=52.31 Aligned_cols=33 Identities=30% Similarity=0.304 Sum_probs=29.2
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| +|..|.++|++|+.+||.|+++.+.
T Consensus 3 k~ilItG~------------------~~~IG~~la~~l~~~g~~vi~~~r~ 35 (259)
T PRK12384 3 QVAVVIGG------------------GQTLGAFLCHGLAEEGYRVAVADIN 35 (259)
T ss_pred CEEEEECC------------------CcHHHHHHHHHHHHCCCEEEEEECC
Confidence 78999998 4677999999999999999988764
No 114
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=96.52 E-value=0.028 Score=50.53 Aligned_cols=33 Identities=36% Similarity=0.427 Sum_probs=28.7
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| ||..|.++|+.|+++|+.|+++.+.
T Consensus 7 ~~~lItG~------------------s~~iG~~la~~l~~~g~~v~~~~~~ 39 (247)
T PRK12935 7 KVAIVTGG------------------AKGIGKAITVALAQEGAKVVINYNS 39 (247)
T ss_pred CEEEEECC------------------CCHHHHHHHHHHHHcCCEEEEEcCC
Confidence 89999998 4677999999999999999876653
No 115
>PRK12744 short chain dehydrogenase; Provisional
Probab=96.50 E-value=0.032 Score=50.76 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=29.9
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |+||||+| +|..|.++|+.|+.+|+.|+++++.
T Consensus 6 l~~--k~vlItGa------------------~~gIG~~~a~~l~~~G~~vv~i~~~ 41 (257)
T PRK12744 6 LKG--KVVLIAGG------------------AKNLGGLIARDLAAQGAKAVAIHYN 41 (257)
T ss_pred CCC--cEEEEECC------------------CchHHHHHHHHHHHCCCcEEEEecC
Confidence 445 89999988 4457999999999999998888754
No 116
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.50 E-value=0.026 Score=53.32 Aligned_cols=36 Identities=36% Similarity=0.576 Sum_probs=31.8
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
++.+|||+. |||. |.++|+.|+++|++|+++.|...
T Consensus 6 ~~~~lITGA-----------------SsGI-G~~~A~~lA~~g~~liLvaR~~~ 41 (265)
T COG0300 6 GKTALITGA-----------------SSGI-GAELAKQLARRGYNLILVARRED 41 (265)
T ss_pred CcEEEEECC-----------------CchH-HHHHHHHHHHCCCEEEEEeCcHH
Confidence 389999987 7776 99999999999999999999643
No 117
>PRK06914 short chain dehydrogenase; Provisional
Probab=96.49 E-value=0.017 Score=53.12 Aligned_cols=33 Identities=39% Similarity=0.450 Sum_probs=29.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|.+|||+| ||..|.++|+.|+.+||.|+.+.+.
T Consensus 4 k~~lItGa------------------sg~iG~~la~~l~~~G~~V~~~~r~ 36 (280)
T PRK06914 4 KIAIVTGA------------------SSGFGLLTTLELAKKGYLVIATMRN 36 (280)
T ss_pred CEEEEECC------------------CchHHHHHHHHHHhCCCEEEEEeCC
Confidence 78999987 6677999999999999999988764
No 118
>PRK08263 short chain dehydrogenase; Provisional
Probab=96.49 E-value=0.018 Score=53.14 Aligned_cols=33 Identities=30% Similarity=0.250 Sum_probs=29.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|.||||+| ||..|..+|++|+++|+.|+++.++
T Consensus 4 k~vlItGa------------------sg~iG~~~a~~l~~~g~~V~~~~r~ 36 (275)
T PRK08263 4 KVWFITGA------------------SRGFGRAWTEAALERGDRVVATARD 36 (275)
T ss_pred CEEEEeCC------------------CChHHHHHHHHHHHCCCEEEEEECC
Confidence 78999977 5778999999999999999998875
No 119
>PRK07326 short chain dehydrogenase; Provisional
Probab=96.49 E-value=0.032 Score=49.73 Aligned_cols=33 Identities=39% Similarity=0.487 Sum_probs=29.6
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++||||+| ||..|.++|++|+.+|+.|+.+.+.
T Consensus 7 ~~ilItGa------------------tg~iG~~la~~l~~~g~~V~~~~r~ 39 (237)
T PRK07326 7 KVALITGG------------------SKGIGFAIAEALLAEGYKVAITARD 39 (237)
T ss_pred CEEEEECC------------------CCcHHHHHHHHHHHCCCEEEEeeCC
Confidence 88999987 7888999999999999999998764
No 120
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=96.48 E-value=0.033 Score=50.80 Aligned_cols=33 Identities=27% Similarity=0.252 Sum_probs=27.7
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++||||+| | |..|.++|+.|+++||.|+++.+.
T Consensus 1 m~vlItGa-----------------s-~gIG~aia~~l~~~G~~V~~~~r~ 33 (259)
T PRK08340 1 MNVLVTAS-----------------S-RGIGFNVARELLKKGARVVISSRN 33 (259)
T ss_pred CeEEEEcC-----------------C-cHHHHHHHHHHHHcCCEEEEEeCC
Confidence 36888887 4 557999999999999999988764
No 121
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.48 E-value=0.039 Score=49.36 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=28.9
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+++|||+| +|-.|..+|+.|+++|+.|+.+.+.
T Consensus 6 ~~~lItG~------------------~g~iG~~~a~~l~~~G~~vi~~~r~ 38 (253)
T PRK08217 6 KVIVITGG------------------AQGLGRAMAEYLAQKGAKLALIDLN 38 (253)
T ss_pred CEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 89999987 5667999999999999999888764
No 122
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.47 E-value=0.033 Score=50.57 Aligned_cols=37 Identities=30% Similarity=0.366 Sum_probs=31.2
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCc-cHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSS-GHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SS-G~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |+||||+| |+ |-.|.++|+.|+.+||.|+++.+.
T Consensus 3 l~~--k~vlItGa-----------------s~~~giG~~la~~l~~~G~~vi~~~r~ 40 (256)
T PRK12748 3 LMK--KIALVTGA-----------------SRLNGIGAAVCRRLAAKGIDIFFTYWS 40 (256)
T ss_pred CCC--cEEEEeCC-----------------CCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence 445 89999998 54 578999999999999999988764
No 123
>PRK06181 short chain dehydrogenase; Provisional
Probab=96.46 E-value=0.034 Score=50.56 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=28.9
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++||||+| ||..|.++|+.|+.+|+.|+.+.+.
T Consensus 2 ~~vlVtGa------------------sg~iG~~la~~l~~~g~~Vi~~~r~ 34 (263)
T PRK06181 2 KVVIITGA------------------SEGIGRALAVRLARAGAQLVLAARN 34 (263)
T ss_pred CEEEEecC------------------CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 67899987 5678999999999999999998864
No 124
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.46 E-value=0.027 Score=53.23 Aligned_cols=36 Identities=31% Similarity=0.347 Sum_probs=30.4
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
++.| |++|||+| | |-.|.++|++|+++|+.|+++.+
T Consensus 9 ~l~~--k~~lVTGa-----------------s-~gIG~~ia~~L~~~Ga~Vv~~~~ 44 (306)
T PRK07792 9 DLSG--KVAVVTGA-----------------A-AGLGRAEALGLARLGATVVVNDV 44 (306)
T ss_pred CCCC--CEEEEECC-----------------C-ChHHHHHHHHHHHCCCEEEEecC
Confidence 4556 99999998 3 45699999999999999988765
No 125
>PRK07806 short chain dehydrogenase; Provisional
Probab=96.44 E-value=0.038 Score=49.69 Aligned_cols=36 Identities=33% Similarity=0.411 Sum_probs=30.6
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| ||..|.++|++|+.+|++|+.+.+.
T Consensus 4 ~~~--k~vlItGa------------------sggiG~~l~~~l~~~G~~V~~~~r~ 39 (248)
T PRK07806 4 LPG--KTALVTGS------------------SRGIGADTAKILAGAGAHVVVNYRQ 39 (248)
T ss_pred CCC--cEEEEECC------------------CCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 445 89999987 4567999999999999999988764
No 126
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=96.42 E-value=0.036 Score=49.35 Aligned_cols=25 Identities=32% Similarity=0.310 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
||-.|..+|+.|+++|+.|+.+.++
T Consensus 9 sg~iG~~la~~l~~~G~~v~~~~r~ 33 (242)
T TIGR01829 9 MGGIGTAICQRLAKDGYRVAANCGP 33 (242)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 5667999999999999999988873
No 127
>PRK06182 short chain dehydrogenase; Validated
Probab=96.42 E-value=0.035 Score=50.98 Aligned_cols=33 Identities=39% Similarity=0.451 Sum_probs=29.1
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|.++|++|+.+|+.|+.+.+.
T Consensus 4 k~vlItGa------------------sggiG~~la~~l~~~G~~V~~~~r~ 36 (273)
T PRK06182 4 KVALVTGA------------------SSGIGKATARRLAAQGYTVYGAARR 36 (273)
T ss_pred CEEEEECC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 88999987 4667999999999999999988764
No 128
>PRK07677 short chain dehydrogenase; Provisional
Probab=96.42 E-value=0.03 Score=50.72 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=28.6
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| + |-.|.++|+.|+++|+.|+++.+.
T Consensus 2 k~~lItG~-----------------s-~giG~~ia~~l~~~G~~Vi~~~r~ 34 (252)
T PRK07677 2 KVVIITGG-----------------S-SGMGKAMAKRFAEEGANVVITGRT 34 (252)
T ss_pred CEEEEeCC-----------------C-ChHHHHHHHHHHHCCCEEEEEeCC
Confidence 88999998 4 447999999999999999888764
No 129
>PRK06180 short chain dehydrogenase; Provisional
Probab=96.40 E-value=0.018 Score=53.15 Aligned_cols=33 Identities=21% Similarity=0.141 Sum_probs=29.6
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|.++|+.|+++|+.|+.+.++
T Consensus 5 ~~vlVtGa------------------sggiG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 5 KTWLITGV------------------SSGFGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CEEEEecC------------------CChHHHHHHHHHHhCcCEEEEEeCC
Confidence 78999998 5677999999999999999999875
No 130
>PRK12747 short chain dehydrogenase; Provisional
Probab=96.39 E-value=0.041 Score=49.74 Aligned_cols=32 Identities=38% Similarity=0.435 Sum_probs=27.7
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
|++|||+| |+| .|.++|+.|++.|+.|++..+
T Consensus 5 k~~lItGa-----------------s~g-IG~~ia~~l~~~G~~v~~~~~ 36 (252)
T PRK12747 5 KVALVTGA-----------------SRG-IGRAIAKRLANDGALVAIHYG 36 (252)
T ss_pred CEEEEeCC-----------------CCh-HHHHHHHHHHHCCCeEEEEcC
Confidence 89999998 444 699999999999999988654
No 131
>PRK06482 short chain dehydrogenase; Provisional
Probab=96.38 E-value=0.021 Score=52.46 Aligned_cols=33 Identities=30% Similarity=0.303 Sum_probs=29.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|.++|++|+++|+.|+++.++
T Consensus 3 k~vlVtGa------------------sg~IG~~la~~L~~~g~~v~~~~r~ 35 (276)
T PRK06482 3 KTWFITGA------------------SSGFGRGMTERLLARGDRVAATVRR 35 (276)
T ss_pred CEEEEecC------------------CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 78999987 6778999999999999999998874
No 132
>PLN02778 3,5-epimerase/4-reductase
Probab=96.37 E-value=0.013 Score=55.55 Aligned_cols=32 Identities=9% Similarity=0.014 Sum_probs=28.7
Q ss_pred CCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEE
Q 021383 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFL 91 (313)
Q Consensus 42 ~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i 91 (313)
..++||||+| ||..|..|+++|+++|++|++.
T Consensus 8 ~~~kiLVtG~------------------tGfiG~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 8 ATLKFLIYGK------------------TGWIGGLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCeEEEECC------------------CCHHHHHHHHHHHhCCCEEEEe
Confidence 3489999997 8999999999999999999864
No 133
>PRK07454 short chain dehydrogenase; Provisional
Probab=96.37 E-value=0.041 Score=49.31 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=29.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| ||..|..+|++|+++|+.|+++.++
T Consensus 7 k~vlItG~------------------sg~iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 7 PRALITGA------------------SSGIGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 78999976 6788999999999999999998874
No 134
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=96.36 E-value=0.026 Score=53.67 Aligned_cols=33 Identities=30% Similarity=0.430 Sum_probs=28.5
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCC-CEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMG-YAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~G-a~V~~i~g~ 94 (313)
|++|||+| |+| .|.++|+.|+++| +.|+++.+.
T Consensus 4 k~vlITGa-----------------s~G-IG~aia~~L~~~G~~~V~l~~r~ 37 (314)
T TIGR01289 4 PTVIITGA-----------------SSG-LGLYAAKALAATGEWHVIMACRD 37 (314)
T ss_pred CEEEEECC-----------------CCh-HHHHHHHHHHHcCCCEEEEEeCC
Confidence 78999988 555 5999999999999 999988764
No 135
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.36 E-value=0.027 Score=51.15 Aligned_cols=36 Identities=33% Similarity=0.493 Sum_probs=30.0
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| | |-.|.++|+.|+++|+.|+++.+.
T Consensus 5 l~~--k~~lItGa-----------------s-~gIG~~~a~~l~~~G~~v~~~~~~ 40 (255)
T PRK06463 5 FKG--KVALITGG-----------------T-RGIGRAIAEAFLREGAKVAVLYNS 40 (255)
T ss_pred cCC--CEEEEeCC-----------------C-ChHHHHHHHHHHHCCCEEEEEeCC
Confidence 445 89999998 4 556999999999999999987653
No 136
>PRK06198 short chain dehydrogenase; Provisional
Probab=96.35 E-value=0.034 Score=50.33 Aligned_cols=36 Identities=33% Similarity=0.407 Sum_probs=29.8
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCE-EEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYA-VIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~-V~~i~g~ 94 (313)
+.+ |+||||+| ||..|..+|+.|+++|+. |+++.+.
T Consensus 4 ~~~--k~vlItGa------------------~g~iG~~la~~l~~~G~~~V~~~~r~ 40 (260)
T PRK06198 4 LDG--KVALVTGG------------------TQGLGAAIARAFAERGAAGLVICGRN 40 (260)
T ss_pred CCC--cEEEEeCC------------------CchHHHHHHHHHHHCCCCeEEEEcCC
Confidence 445 89999976 456899999999999999 8877764
No 137
>PRK05650 short chain dehydrogenase; Provisional
Probab=96.35 E-value=0.04 Score=50.51 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
||..|.++|+.|+++|+.|+++.+.
T Consensus 9 sggIG~~la~~l~~~g~~V~~~~r~ 33 (270)
T PRK05650 9 ASGLGRAIALRWAREGWRLALADVN 33 (270)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 5667999999999999999988764
No 138
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=96.34 E-value=0.045 Score=49.67 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=29.0
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|.++|+.|+.+|+.|+++.+.
T Consensus 12 k~vlVtG~------------------s~gIG~~la~~l~~~G~~vv~~~r~ 44 (255)
T PRK06113 12 KCAIITGA------------------GAGIGKEIAITFATAGASVVVSDIN 44 (255)
T ss_pred CEEEEECC------------------CchHHHHHHHHHHHCCCeEEEEeCC
Confidence 99999998 4556999999999999999888754
No 139
>PRK06484 short chain dehydrogenase; Validated
Probab=96.34 E-value=0.019 Score=57.96 Aligned_cols=75 Identities=17% Similarity=0.127 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHHhcc-CCCCCCCceEEEecCCccc---------cc-C----CCCeeeeccCCccHHHHHHHHHH
Q 021383 17 PPLNDRAAISQKLKEFIALN-SSESGTRRVACVTSGGTTV---------PL-E----QRCVRYIDNFSSGHRGAASTEHL 81 (313)
Q Consensus 17 ~~~~~~~~I~~~v~~~l~~~-~~l~~~~k~VLITsGgT~e---------pI-D----~~~VR~ItN~SSG~~G~~lAe~~ 81 (313)
+++..|+++...+.-.+... ....| ..+.+-+|.+.. +- + .+.+=.||=- ||-.|.++|+.|
T Consensus 213 ~~~~~~~~va~~v~~l~~~~~~~~~G--~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~k~~lItGa-s~gIG~~~a~~l 289 (520)
T PRK06484 213 GRLGRPEEIAEAVFFLASDQASYITG--STLVVDGGWTVYGGSGPASTAQAPSPLAESPRVVAITGG-ARGIGRAVADRF 289 (520)
T ss_pred CCCcCHHHHHHHHHHHhCccccCccC--ceEEecCCeeccccccCCCCccCCCCcccCCCEEEEECC-CcHHHHHHHHHH
Confidence 34568889888776444321 22333 555555443311 00 1 0112244443 455799999999
Q ss_pred HHCCCEEEEEecC
Q 021383 82 IKMGYAVIFLYRR 94 (313)
Q Consensus 82 ~~~Ga~V~~i~g~ 94 (313)
+++|+.|+++.+.
T Consensus 290 ~~~G~~V~~~~r~ 302 (520)
T PRK06484 290 AAAGDRLLIIDRD 302 (520)
T ss_pred HHCCCEEEEEeCC
Confidence 9999999998764
No 140
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=96.33 E-value=0.034 Score=49.96 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=28.2
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||-.|..+|+.|+++|+.|++++++
T Consensus 3 k~ilItGa------------------s~giG~~la~~l~~~g~~v~~~~~~ 35 (248)
T PRK06947 3 KVVLITGA------------------SRGIGRATAVLAAARGWSVGINYAR 35 (248)
T ss_pred cEEEEeCC------------------CCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 78999988 4567999999999999999887654
No 141
>PRK06057 short chain dehydrogenase; Provisional
Probab=96.32 E-value=0.045 Score=49.71 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=31.0
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.| |+||||+| ||-.|.++|++|+++|+.|+++.+.
T Consensus 5 ~~~--~~vlItGa------------------sggIG~~~a~~l~~~G~~v~~~~r~ 40 (255)
T PRK06057 5 LAG--RVAVITGG------------------GSGIGLATARRLAAEGATVVVGDID 40 (255)
T ss_pred CCC--CEEEEECC------------------CchHHHHHHHHHHHcCCEEEEEeCC
Confidence 556 89999998 4667999999999999999998764
No 142
>PRK06720 hypothetical protein; Provisional
Probab=96.31 E-value=0.059 Score=47.19 Aligned_cols=33 Identities=33% Similarity=0.260 Sum_probs=28.2
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| + |-.|.++|..|+++|+.|+++.+.
T Consensus 17 k~~lVTGa-----------------~-~GIG~aia~~l~~~G~~V~l~~r~ 49 (169)
T PRK06720 17 KVAIVTGG-----------------G-IGIGRNTALLLAKQGAKVIVTDID 49 (169)
T ss_pred CEEEEecC-----------------C-ChHHHHHHHHHHHCCCEEEEEECC
Confidence 89999998 3 456999999999999999888753
No 143
>PRK06701 short chain dehydrogenase; Provisional
Probab=96.31 E-value=0.04 Score=51.68 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=29.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|.++|+.|+++|+.|+++.+.
T Consensus 47 k~iLItGa------------------sggIG~~la~~l~~~G~~V~l~~r~ 79 (290)
T PRK06701 47 KVALITGG------------------DSGIGRAVAVLFAKEGADIAIVYLD 79 (290)
T ss_pred CEEEEeCC------------------CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 89999998 5667999999999999999988764
No 144
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.30 E-value=0.032 Score=53.45 Aligned_cols=38 Identities=26% Similarity=0.356 Sum_probs=31.0
Q ss_pred CCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 37 SSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 37 ~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++.+| ++||||+| ++|. |.++|.+|+++|+.+.+.--.
T Consensus 34 k~v~g--~~vLITGg-----------------g~Gl-Gr~ialefa~rg~~~vl~Din 71 (300)
T KOG1201|consen 34 KSVSG--EIVLITGG-----------------GSGL-GRLIALEFAKRGAKLVLWDIN 71 (300)
T ss_pred hhccC--CEEEEeCC-----------------CchH-HHHHHHHHHHhCCeEEEEecc
Confidence 44555 99999999 6775 999999999999977666643
No 145
>PRK07577 short chain dehydrogenase; Provisional
Probab=96.30 E-value=0.025 Score=50.37 Aligned_cols=34 Identities=29% Similarity=0.301 Sum_probs=30.3
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
|+||||+| ||..|..+|++|+++|+.|+.+.+..
T Consensus 4 k~vlItG~------------------s~~iG~~ia~~l~~~G~~v~~~~r~~ 37 (234)
T PRK07577 4 RTVLVTGA------------------TKGIGLALSLRLANLGHQVIGIARSA 37 (234)
T ss_pred CEEEEECC------------------CCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 88999987 57789999999999999999998764
No 146
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=96.30 E-value=0.045 Score=49.28 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.2
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
||-.|.++|++|+++|+.|+++.++
T Consensus 9 sg~iG~~la~~l~~~G~~v~~~~r~ 33 (254)
T TIGR02415 9 AQGIGKGIAERLAKDGFAVAVADLN 33 (254)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 5667999999999999999998864
No 147
>PRK12828 short chain dehydrogenase; Provisional
Probab=96.29 E-value=0.051 Score=48.07 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=29.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|..+|+.|+++|+.|+++.+.
T Consensus 8 k~vlItGa------------------tg~iG~~la~~l~~~G~~v~~~~r~ 40 (239)
T PRK12828 8 KVVAITGG------------------FGGLGRATAAWLAARGARVALIGRG 40 (239)
T ss_pred CEEEEECC------------------CCcHhHHHHHHHHHCCCeEEEEeCC
Confidence 89999987 5777999999999999999999874
No 148
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=96.28 E-value=0.03 Score=50.34 Aligned_cols=37 Identities=24% Similarity=0.176 Sum_probs=31.3
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
+.+ |++|||+| ||..|.++|+.|+++|+.|+.+.+..
T Consensus 6 ~~~--k~vlItGa------------------s~~iG~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 6 FSG--KTVWVTGA------------------AQGIGYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CCC--CEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEecch
Confidence 445 89999987 45669999999999999999998753
No 149
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=96.27 E-value=0.028 Score=51.00 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=29.0
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||-.|.++|+.|+++|+.|+++.+.
T Consensus 7 ~~vlItGa------------------s~~iG~~ia~~l~~~G~~v~~~~r~ 39 (257)
T PRK07067 7 KVALLTGA------------------ASGIGEAVAERYLAEGARVVIADIK 39 (257)
T ss_pred CEEEEeCC------------------CchHHHHHHHHHHHcCCEEEEEcCC
Confidence 88999988 4566999999999999999998764
No 150
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.26 E-value=0.014 Score=56.25 Aligned_cols=35 Identities=34% Similarity=0.370 Sum_probs=32.9
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
++|+||+| |+|. |.++|.++...|++|+.+.++..
T Consensus 34 ~hi~itgg-----------------S~gl-gl~la~e~~~~ga~Vti~ar~~~ 68 (331)
T KOG1210|consen 34 RHILITGG-----------------SSGL-GLALALECKREGADVTITARSGK 68 (331)
T ss_pred ceEEEecC-----------------cchh-hHHHHHHHHHccCceEEEeccHH
Confidence 79999999 9997 99999999999999999999765
No 151
>PRK09135 pteridine reductase; Provisional
Probab=96.25 E-value=0.023 Score=50.76 Aligned_cols=33 Identities=39% Similarity=0.581 Sum_probs=29.7
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++||||+| ||..|..+|++|+++|+.|+.+.+.
T Consensus 7 ~~vlItGa------------------~g~iG~~l~~~l~~~g~~v~~~~r~ 39 (249)
T PRK09135 7 KVALITGG------------------ARRIGAAIARTLHAAGYRVAIHYHR 39 (249)
T ss_pred CEEEEeCC------------------CchHHHHHHHHHHHCCCEEEEEcCC
Confidence 88999998 5778999999999999999998864
No 152
>PRK08264 short chain dehydrogenase; Validated
Probab=96.23 E-value=0.024 Score=50.67 Aligned_cols=34 Identities=29% Similarity=0.261 Sum_probs=30.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCC-EEEEEecCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGY-AVIFLYRRG 95 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga-~V~~i~g~~ 95 (313)
++||||+| ||..|.++|+.|+++|+ .|+.+.++.
T Consensus 7 ~~vlItGg------------------sg~iG~~la~~l~~~G~~~V~~~~r~~ 41 (238)
T PRK08264 7 KVVLVTGA------------------NRGIGRAFVEQLLARGAAKVYAAARDP 41 (238)
T ss_pred CEEEEECC------------------CchHHHHHHHHHHHCCcccEEEEecCh
Confidence 89999998 67789999999999999 998888754
No 153
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=96.22 E-value=0.025 Score=53.85 Aligned_cols=38 Identities=34% Similarity=0.475 Sum_probs=33.0
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
++++ |+||||+| ||..|.+++++|+.+|++|+.+.+..
T Consensus 3 ~~~~--~~vlVTGa------------------tGfiG~~l~~~L~~~G~~V~~~~r~~ 40 (340)
T PLN02653 3 DPPR--KVALITGI------------------TGQDGSYLTEFLLSKGYEVHGIIRRS 40 (340)
T ss_pred CCCC--CEEEEECC------------------CCccHHHHHHHHHHCCCEEEEEeccc
Confidence 4445 89999998 78999999999999999999987754
No 154
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.22 E-value=0.042 Score=50.39 Aligned_cols=37 Identities=14% Similarity=-0.019 Sum_probs=30.3
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
+.+ |++|||+|+ +|+-.|.++|+.|+++|+.|++..+
T Consensus 5 ~~~--k~~lItGa~----------------~s~GIG~a~a~~la~~G~~v~l~~r 41 (256)
T PRK07889 5 LEG--KRILVTGVI----------------TDSSIAFHVARVAQEQGAEVVLTGF 41 (256)
T ss_pred ccC--CEEEEeCCC----------------CcchHHHHHHHHHHHCCCEEEEecC
Confidence 445 899999982 1466799999999999999988765
No 155
>PRK08267 short chain dehydrogenase; Provisional
Probab=96.21 E-value=0.047 Score=49.60 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=29.1
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| ||..|.++|++++++|+.|+++.++
T Consensus 2 k~vlItGa------------------sg~iG~~la~~l~~~G~~V~~~~r~ 34 (260)
T PRK08267 2 KSIFITGA------------------ASGIGRATALLFAAEGWRVGAYDIN 34 (260)
T ss_pred cEEEEeCC------------------CchHHHHHHHHHHHCCCeEEEEeCC
Confidence 67999987 5678999999999999999998764
No 156
>PRK09134 short chain dehydrogenase; Provisional
Probab=96.21 E-value=0.049 Score=49.52 Aligned_cols=33 Identities=33% Similarity=0.426 Sum_probs=28.7
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| ||-.|..+|+.|+++|+.|+++.+.
T Consensus 10 k~vlItGa------------------s~giG~~la~~l~~~g~~v~~~~~~ 42 (258)
T PRK09134 10 RAALVTGA------------------ARRIGRAIALDLAAHGFDVAVHYNR 42 (258)
T ss_pred CEEEEeCC------------------CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 89999977 4777999999999999999887653
No 157
>PRK07832 short chain dehydrogenase; Provisional
Probab=96.18 E-value=0.056 Score=49.69 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=27.6
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| ||-.|.++|+.|+++|+.|+++.+.
T Consensus 1 k~vlItGa------------------s~giG~~la~~la~~G~~vv~~~r~ 33 (272)
T PRK07832 1 KRCFVTGA------------------ASGIGRATALRLAAQGAELFLTDRD 33 (272)
T ss_pred CEEEEeCC------------------CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46888887 4567999999999999999888754
No 158
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=96.18 E-value=0.087 Score=52.52 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=43.9
Q ss_pred HHhhhccCCCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHH--HHHHHHHCCC
Q 021383 9 IESFFDSAPPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAA--STEHLIKMGY 86 (313)
Q Consensus 9 ~~~ff~~~~~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~--lAe~~~~~Ga 86 (313)
+..|...+.-|..=++-+..-.++...+....+++|++|||+| |+|. |.+ +|++| ..||
T Consensus 7 ~rg~i~~~~hp~gc~~~v~~qi~~~~~~~~~~~ggK~aLVTGa-----------------SsGI-GlA~~IA~al-~~GA 67 (398)
T PRK13656 7 IRGFICTTAHPVGCEANVKEQIEYVKAQGPIANGPKKVLVIGA-----------------SSGY-GLASRIAAAF-GAGA 67 (398)
T ss_pred ccceeECCCCCHHHHHHHHHHHHHHHhcCCcCCCCCEEEEECC-----------------CchH-hHHHHHHHHH-HcCC
Confidence 3445555555555444444333455444344345699999999 6665 888 89999 9999
Q ss_pred EEEEEec
Q 021383 87 AVIFLYR 93 (313)
Q Consensus 87 ~V~~i~g 93 (313)
+|+.++.
T Consensus 68 ~Vi~v~~ 74 (398)
T PRK13656 68 DTLGVFF 74 (398)
T ss_pred eEEEEec
Confidence 9988874
No 159
>PLN02780 ketoreductase/ oxidoreductase
Probab=96.14 E-value=0.039 Score=52.88 Aligned_cols=34 Identities=24% Similarity=0.316 Sum_probs=29.6
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++.+|||+| |+| .|.++|++|+++|++|+++.+.
T Consensus 53 g~~~lITGA-----------------s~G-IG~alA~~La~~G~~Vil~~R~ 86 (320)
T PLN02780 53 GSWALVTGP-----------------TDG-IGKGFAFQLARKGLNLVLVARN 86 (320)
T ss_pred CCEEEEeCC-----------------CcH-HHHHHHHHHHHCCCCEEEEECC
Confidence 389999988 555 5999999999999999998874
No 160
>PRK06483 dihydromonapterin reductase; Provisional
Probab=96.14 E-value=0.036 Score=49.65 Aligned_cols=33 Identities=30% Similarity=0.362 Sum_probs=28.9
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| ||..|.++|+.|+.+|+.|+++.+.
T Consensus 3 k~vlItGa------------------s~gIG~~ia~~l~~~G~~V~~~~r~ 35 (236)
T PRK06483 3 APILITGA------------------GQRIGLALAWHLLAQGQPVIVSYRT 35 (236)
T ss_pred ceEEEECC------------------CChHHHHHHHHHHHCCCeEEEEeCC
Confidence 78999998 4566999999999999999998764
No 161
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=96.13 E-value=0.074 Score=47.43 Aligned_cols=32 Identities=31% Similarity=0.194 Sum_probs=27.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
+++|||+| ||..|.++|++|+++|+.|++..+
T Consensus 7 ~~vlItGa------------------~g~iG~~la~~l~~~g~~v~~~~~ 38 (245)
T PRK12936 7 RKALVTGA------------------SGGIGEEIARLLHAQGAIVGLHGT 38 (245)
T ss_pred CEEEEECC------------------CChHHHHHHHHHHHCCCEEEEEcC
Confidence 89999987 577899999999999998877654
No 162
>PRK07201 short chain dehydrogenase; Provisional
Probab=96.13 E-value=0.047 Score=56.65 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=29.2
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| ||..|.++|+.|+++|+.|+++.+.
T Consensus 372 k~vlItGa------------------s~giG~~la~~l~~~G~~V~~~~r~ 404 (657)
T PRK07201 372 KVVLITGA------------------SSGIGRATAIKVAEAGATVFLVARN 404 (657)
T ss_pred CEEEEeCC------------------CCHHHHHHHHHHHHCCCEEEEEECC
Confidence 88999987 4667999999999999999998864
No 163
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=96.11 E-value=0.035 Score=50.26 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=22.3
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
||..|.++|+.|++.|+.|+++.+.
T Consensus 9 sg~iG~~la~~l~~~G~~V~~~~r~ 33 (248)
T PRK10538 9 TAGFGECITRRFIQQGHKVIATGRR 33 (248)
T ss_pred CchHHHHHHHHHHHCCCEEEEEECC
Confidence 6677999999999999999988764
No 164
>PRK05855 short chain dehydrogenase; Validated
Probab=96.10 E-value=0.1 Score=52.58 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
||-.|.++|+.|+++|+.|+++.+.
T Consensus 324 s~giG~~~a~~l~~~G~~v~~~~r~ 348 (582)
T PRK05855 324 GSGIGRETALAFAREGAEVVASDID 348 (582)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 5667999999999999999998864
No 165
>PRK07831 short chain dehydrogenase; Provisional
Probab=96.08 E-value=0.043 Score=50.03 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=27.6
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
|++|||+| |++-.|.++|+.|+.+|+.|+++.+
T Consensus 18 k~vlItG~-----------------sg~gIG~~ia~~l~~~G~~V~~~~~ 50 (262)
T PRK07831 18 KVVLVTAA-----------------AGTGIGSATARRALEEGARVVISDI 50 (262)
T ss_pred CEEEEECC-----------------CcccHHHHHHHHHHHcCCEEEEEeC
Confidence 89999988 4224699999999999999887664
No 166
>PRK06484 short chain dehydrogenase; Validated
Probab=96.04 E-value=0.051 Score=54.83 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=29.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| |+| .|.++|+.|+++|+.|+++.+.
T Consensus 6 k~~lITGa-----------------s~g-IG~aia~~l~~~G~~V~~~~r~ 38 (520)
T PRK06484 6 RVVLVTGA-----------------AGG-IGRAACQRFARAGDQVVVADRN 38 (520)
T ss_pred eEEEEECC-----------------CcH-HHHHHHHHHHHCCCEEEEEeCC
Confidence 89999998 555 6999999999999999998764
No 167
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=96.02 E-value=0.022 Score=54.45 Aligned_cols=34 Identities=35% Similarity=0.538 Sum_probs=30.3
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
|+||||+| ||-.|..++++|+.+|++|+.+.+..
T Consensus 1 ~~vlVTGa------------------tGfIG~~l~~~L~~~G~~V~~~~r~~ 34 (343)
T TIGR01472 1 KIALITGI------------------TGQDGSYLAEFLLEKGYEVHGLIRRS 34 (343)
T ss_pred CeEEEEcC------------------CCcHHHHHHHHHHHCCCEEEEEecCC
Confidence 58999976 79999999999999999999988753
No 168
>PRK06123 short chain dehydrogenase; Provisional
Probab=96.02 E-value=0.072 Score=47.79 Aligned_cols=32 Identities=34% Similarity=0.399 Sum_probs=27.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
+.+|||+| ||..|.++|++|+++|+.|+++.+
T Consensus 3 ~~~lVtG~------------------~~~iG~~~a~~l~~~G~~vv~~~~ 34 (248)
T PRK06123 3 KVMIITGA------------------SRGIGAATALLAAERGYAVCLNYL 34 (248)
T ss_pred CEEEEECC------------------CchHHHHHHHHHHHCCCeEEEecC
Confidence 67899988 467799999999999999987654
No 169
>PRK05993 short chain dehydrogenase; Provisional
Probab=96.01 E-value=0.073 Score=49.24 Aligned_cols=33 Identities=27% Similarity=0.287 Sum_probs=29.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|.++|+.|+++|+.|+++.+.
T Consensus 5 k~vlItGa------------------sggiG~~la~~l~~~G~~Vi~~~r~ 37 (277)
T PRK05993 5 RSILITGC------------------SSGIGAYCARALQSDGWRVFATCRK 37 (277)
T ss_pred CEEEEeCC------------------CcHHHHHHHHHHHHCCCEEEEEECC
Confidence 78999987 5677999999999999999998875
No 170
>PRK07904 short chain dehydrogenase; Provisional
Probab=95.98 E-value=0.084 Score=48.38 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=30.1
Q ss_pred CCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCC-CEEEEEecC
Q 021383 41 GTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMG-YAVIFLYRR 94 (313)
Q Consensus 41 ~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~G-a~V~~i~g~ 94 (313)
|++++||||+| ||..|.++|++|+++| +.|+++.+.
T Consensus 6 ~~~~~vlItGa------------------s~giG~~la~~l~~~gg~~V~~~~r~ 42 (253)
T PRK07904 6 GNPQTILLLGG------------------TSEIGLAICERYLKNAPARVVLAALP 42 (253)
T ss_pred CCCcEEEEEcC------------------CcHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 35589999998 4567999999999995 999988764
No 171
>PRK08703 short chain dehydrogenase; Provisional
Probab=95.94 E-value=0.073 Score=47.72 Aligned_cols=36 Identities=25% Similarity=0.262 Sum_probs=31.0
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |+||||+| ||..|.++|+.|+++|+.|+++.+.
T Consensus 4 l~~--k~vlItG~------------------sggiG~~la~~l~~~g~~V~~~~r~ 39 (239)
T PRK08703 4 LSD--KTILVTGA------------------SQGLGEQVAKAYAAAGATVILVARH 39 (239)
T ss_pred CCC--CEEEEECC------------------CCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 555 89999987 4667999999999999999998864
No 172
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.94 E-value=0.041 Score=49.08 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=30.6
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| ||..|.++|+.|+++|+.|+++.++
T Consensus 3 l~~--k~~lVtGa------------------s~~iG~~ia~~l~~~G~~v~~~~r~ 38 (235)
T PRK06550 3 FMT--KTVLITGA------------------ASGIGLAQARAFLAQGAQVYGVDKQ 38 (235)
T ss_pred CCC--CEEEEcCC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 445 89999987 4567999999999999999988765
No 173
>PRK05693 short chain dehydrogenase; Provisional
Probab=95.94 E-value=0.054 Score=49.78 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=28.6
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||-.|.++|+.|+++|+.|+.+.+.
T Consensus 2 k~vlItGa------------------sggiG~~la~~l~~~G~~V~~~~r~ 34 (274)
T PRK05693 2 PVVLITGC------------------SSGIGRALADAFKAAGYEVWATARK 34 (274)
T ss_pred CEEEEecC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 67899988 4567999999999999999988764
No 174
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=95.85 E-value=0.044 Score=52.50 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=30.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||-.|.++|+.|+++|++|+.+.+.
T Consensus 5 k~ilItGa------------------tG~IG~~l~~~L~~~G~~V~~~~r~ 37 (349)
T TIGR02622 5 KKVLVTGH------------------TGFKGSWLSLWLLELGAEVYGYSLD 37 (349)
T ss_pred CEEEEECC------------------CChhHHHHHHHHHHCCCEEEEEeCC
Confidence 89999998 7899999999999999999988764
No 175
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.84 E-value=0.046 Score=53.32 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=34.6
Q ss_pred CCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 37 SSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 37 ~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
..+.+.+|+||||+| ||.-|..++++|.++|++|+.+.+.
T Consensus 15 ~~~~~~~~~IlVtGg------------------tGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 15 PYWPSEKLRICITGA------------------GGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCCCCCCEEEEECC------------------ccHHHHHHHHHHHhCCCEEEEEEec
Confidence 345556699999977 8999999999999999999999874
No 176
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=95.82 E-value=0.093 Score=46.85 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=21.1
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEec
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
||..|.++++.|+.+|+.|+++.+
T Consensus 10 ~g~iG~~l~~~l~~~g~~v~~~~~ 33 (247)
T PRK09730 10 SRGIGRATALLLAQEGYTVAVNYQ 33 (247)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeC
Confidence 577899999999999999987654
No 177
>PRK07775 short chain dehydrogenase; Provisional
Probab=95.80 E-value=0.11 Score=47.86 Aligned_cols=33 Identities=36% Similarity=0.407 Sum_probs=28.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|.||||+| +|-.|.++|+.|+.+|+.|+++.+.
T Consensus 11 ~~vlVtGa------------------~g~iG~~la~~L~~~G~~V~~~~r~ 43 (274)
T PRK07775 11 RPALVAGA------------------SSGIGAATAIELAAAGFPVALGARR 43 (274)
T ss_pred CEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 78999987 5677999999999999999888764
No 178
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=95.78 E-value=0.11 Score=46.23 Aligned_cols=33 Identities=33% Similarity=0.456 Sum_probs=28.9
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|.++|+.|+++|+.|+.+.+.
T Consensus 3 k~vlItG~------------------s~~iG~~la~~l~~~g~~vi~~~r~ 35 (245)
T PRK12824 3 KIALVTGA------------------KRGIGSAIARELLNDGYRVIATYFS 35 (245)
T ss_pred CEEEEeCC------------------CchHHHHHHHHHHHcCCEEEEEeCC
Confidence 67888887 5667999999999999999999875
No 179
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.74 E-value=0.099 Score=52.01 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=42.4
Q ss_pred CCHHHHHHHHHHHHhc-c-CCCCCCCceEEEecCCcccccCC-----CCeeeeccCCccHHHHHHHHHHHHCCCEEEEEe
Q 021383 20 NDRAAISQKLKEFIAL-N-SSESGTRRVACVTSGGTTVPLEQ-----RCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (313)
Q Consensus 20 ~~~~~I~~~v~~~l~~-~-~~l~~~~k~VLITsGgT~epID~-----~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~ 92 (313)
.+++++...+ +|+.. . ... .++.+.+..|.+..|-|. +.+=.||- .||-.|.++|+.|.++|+.|+++.
T Consensus 166 ~~~~~~~~~~-~~l~s~~~a~~--~g~~i~~~~~~~~~~~~~~~~~~g~~vlItG-asggIG~~la~~l~~~Ga~vi~~~ 241 (450)
T PRK08261 166 GAEAGLESTL-RFFLSPRSAYV--SGQVVRVGAADAAPPADWDRPLAGKVALVTG-AARGIGAAIAEVLARDGAHVVCLD 241 (450)
T ss_pred CCHHHHHHHH-HHhcCCccCCc--cCcEEEecCCcccCCCCcccCCCCCEEEEec-CCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3556665555 34432 2 122 236666666665433331 12223333 466789999999999999999987
Q ss_pred cC
Q 021383 93 RR 94 (313)
Q Consensus 93 g~ 94 (313)
++
T Consensus 242 ~~ 243 (450)
T PRK08261 242 VP 243 (450)
T ss_pred CC
Confidence 63
No 180
>PRK08177 short chain dehydrogenase; Provisional
Probab=95.70 E-value=0.046 Score=48.76 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=29.1
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|.++|+.|+++|+.|+++.+.
T Consensus 2 k~vlItG~------------------sg~iG~~la~~l~~~G~~V~~~~r~ 34 (225)
T PRK08177 2 RTALIIGA------------------SRGLGLGLVDRLLERGWQVTATVRG 34 (225)
T ss_pred CEEEEeCC------------------CchHHHHHHHHHHhCCCEEEEEeCC
Confidence 67888887 5778999999999999999999875
No 181
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=95.70 E-value=0.053 Score=52.70 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=30.6
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+++|+||++ ||-.|.+|.+.|+.+||.|.=..|.
T Consensus 6 ~~~VcVTGA------------------sGfIgswivk~LL~rGY~V~gtVR~ 39 (327)
T KOG1502|consen 6 GKKVCVTGA------------------SGFIGSWIVKLLLSRGYTVRGTVRD 39 (327)
T ss_pred CcEEEEeCC------------------chHHHHHHHHHHHhCCCEEEEEEcC
Confidence 489999986 8999999999999999999877775
No 182
>PLN00198 anthocyanidin reductase; Provisional
Probab=95.69 E-value=0.034 Score=52.86 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=30.5
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
++||||+| +|..|..||++|+++|++|+.+.+..
T Consensus 10 ~~vlItG~------------------~GfIG~~l~~~L~~~g~~V~~~~r~~ 43 (338)
T PLN00198 10 KTACVIGG------------------TGFLASLLIKLLLQKGYAVNTTVRDP 43 (338)
T ss_pred CeEEEECC------------------chHHHHHHHHHHHHCCCEEEEEECCC
Confidence 89999998 79999999999999999998777653
No 183
>PRK07074 short chain dehydrogenase; Provisional
Probab=95.65 E-value=0.076 Score=48.05 Aligned_cols=33 Identities=30% Similarity=0.344 Sum_probs=28.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| ||..|.++|+.|+++|+.|+.+.+.
T Consensus 3 k~ilItGa------------------t~~iG~~la~~L~~~g~~v~~~~r~ 35 (257)
T PRK07074 3 RTALVTGA------------------AGGIGQALARRFLAAGDRVLALDID 35 (257)
T ss_pred CEEEEECC------------------cchHHHHHHHHHHHCCCEEEEEeCC
Confidence 78999988 4567999999999999999998764
No 184
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=95.64 E-value=0.068 Score=56.63 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=31.4
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.+.+ |+||||+| +|-.|.++|+.|+.+|+.|+++.+.
T Consensus 411 ~l~g--kvvLVTGa------------------sggIG~aiA~~La~~Ga~Vvi~~r~ 447 (676)
T TIGR02632 411 TLAR--RVAFVTGG------------------AGGIGRETARRLAAEGAHVVLADLN 447 (676)
T ss_pred CCCC--CEEEEeCC------------------CcHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3555 99999998 4667999999999999999988764
No 185
>PRK05599 hypothetical protein; Provisional
Probab=95.61 E-value=0.084 Score=48.02 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=26.0
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|.||||+| |+| .|.++|+.|+ .|+.|+++.+.
T Consensus 1 ~~vlItGa-----------------s~G-IG~aia~~l~-~g~~Vil~~r~ 32 (246)
T PRK05599 1 MSILILGG-----------------TSD-IAGEIATLLC-HGEDVVLAARR 32 (246)
T ss_pred CeEEEEeC-----------------ccH-HHHHHHHHHh-CCCEEEEEeCC
Confidence 46888887 555 4999999998 69999998764
No 186
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=95.58 E-value=0.041 Score=51.83 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=27.3
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++||||+| +|..|..++++|+.+| +|+.+.+.
T Consensus 1 m~iLVtG~------------------~GfiGs~l~~~L~~~g-~V~~~~~~ 32 (299)
T PRK09987 1 MNILLFGK------------------TGQVGWELQRALAPLG-NLIALDVH 32 (299)
T ss_pred CeEEEECC------------------CCHHHHHHHHHhhccC-CEEEeccc
Confidence 47899987 8999999999999999 78776653
No 187
>PRK07069 short chain dehydrogenase; Validated
Probab=95.57 E-value=0.077 Score=47.59 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+|-.|.++|+.|+++|++|+++.++
T Consensus 8 ~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 8 AGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4557999999999999999988864
No 188
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=95.55 E-value=0.13 Score=42.45 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=19.3
Q ss_pred ccHHHHHHHHHHHHCCCE-EEEEec
Q 021383 70 SGHRGAASTEHLIKMGYA-VIFLYR 93 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~-V~~i~g 93 (313)
||..|.++|++|+++|+. |+++.+
T Consensus 9 ~~~iG~~~~~~l~~~g~~~v~~~~r 33 (180)
T smart00822 9 LGGLGLELARWLAERGARHLVLLSR 33 (180)
T ss_pred CChHHHHHHHHHHHhhCCeEEEEeC
Confidence 577899999999999985 555554
No 189
>PRK07060 short chain dehydrogenase; Provisional
Probab=95.53 E-value=0.077 Score=47.39 Aligned_cols=36 Identities=31% Similarity=0.278 Sum_probs=30.7
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ +++|||+| ||..|..+|+.|+++|+.|+++.+.
T Consensus 7 ~~~--~~~lItGa------------------~g~iG~~~a~~l~~~g~~V~~~~r~ 42 (245)
T PRK07060 7 FSG--KSVLVTGA------------------SSGIGRACAVALAQRGARVVAAARN 42 (245)
T ss_pred cCC--CEEEEeCC------------------cchHHHHHHHHHHHCCCEEEEEeCC
Confidence 445 89999987 5667999999999999999988764
No 190
>PRK12742 oxidoreductase; Provisional
Probab=95.53 E-value=0.075 Score=47.31 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=29.6
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
+.+ |+||||+| ||-.|.++|+.|+.+|++|+++.+
T Consensus 4 ~~~--k~vlItGa------------------sggIG~~~a~~l~~~G~~v~~~~~ 38 (237)
T PRK12742 4 FTG--KKVLVLGG------------------SRGIGAAIVRRFVTDGANVRFTYA 38 (237)
T ss_pred CCC--CEEEEECC------------------CChHHHHHHHHHHHCCCEEEEecC
Confidence 445 89999987 566799999999999999987754
No 191
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=95.49 E-value=0.11 Score=46.77 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=56.2
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecCCCCCCccCCCCCcccchhhhccCCccEEeeCccHHHHHHHHHHHHHhhhccccc
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLL 148 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~m~~a~~~~~~~~~~~~l~ 148 (313)
+|+-.|.++|+.|++.||.|++.+++... + ...+.+..+++ ..+++
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~-------------------------~----~~~~~~l~~~~-----~~~~~ 49 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEK-------------------------L----ADALEELAKEY-----GAEVI 49 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHH-------------------------H----HHHHHHHHHHT-----TSEEE
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHH-------------------------H----HHHHHHHHHHc-----CCceE
Confidence 45778999999999999999999975220 0 11222222222 24456
Q ss_pred ccccccHHHHHHHHHHHHHHhhhc-CCcceeeeeeccCCC
Q 021383 149 KLPFTTIFEYLQMLQMIAVSSRSL-GPCSMFYLAAAVSDF 187 (313)
Q Consensus 149 ~~~f~t~~dy~~~l~~i~~~l~~~-~~~d~~i~aAAVsDf 187 (313)
...++.-.+...+.+.+.+ .+ +..|++|++|+.+..
T Consensus 50 ~~D~~~~~~v~~~~~~~~~---~~~g~iD~lV~~a~~~~~ 86 (241)
T PF13561_consen 50 QCDLSDEESVEALFDEAVE---RFGGRIDILVNNAGISPP 86 (241)
T ss_dssp ESCTTSHHHHHHHHHHHHH---HHCSSESEEEEEEESCTG
T ss_pred eecCcchHHHHHHHHHHHh---hcCCCeEEEEeccccccc
Confidence 6667777776676666543 45 889999999998776
No 192
>PRK06125 short chain dehydrogenase; Provisional
Probab=95.45 E-value=0.16 Score=46.23 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=30.4
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+ |++|||+| + |-.|.++|+.|+.+|+.|+++.+.
T Consensus 5 ~~~--k~vlItG~-----------------~-~giG~~ia~~l~~~G~~V~~~~r~ 40 (259)
T PRK06125 5 LAG--KRVLITGA-----------------S-KGIGAAAAEAFAAEGCHLHLVARD 40 (259)
T ss_pred CCC--CEEEEeCC-----------------C-chHHHHHHHHHHHcCCEEEEEeCC
Confidence 445 89999998 4 447999999999999999998864
No 193
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=95.44 E-value=0.084 Score=49.20 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
+|..|..+|++|+++|+.|+.+.++..
T Consensus 9 ~G~iG~~l~~~L~~~g~~V~~~~r~~~ 35 (328)
T TIGR03466 9 TGFVGSAVVRLLLEQGEEVRVLVRPTS 35 (328)
T ss_pred ccchhHHHHHHHHHCCCEEEEEEecCc
Confidence 889999999999999999999998643
No 194
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=95.43 E-value=0.085 Score=50.63 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=30.4
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+++||||+| +|..|..+|++|+.+|++|+.+.+.
T Consensus 10 ~~~vLVtG~------------------~GfIG~~l~~~L~~~G~~V~~~~r~ 43 (353)
T PLN02896 10 TGTYCVTGA------------------TGYIGSWLVKLLLQRGYTVHATLRD 43 (353)
T ss_pred CCEEEEECC------------------CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 389999987 7999999999999999999987664
No 195
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.41 E-value=0.15 Score=45.81 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=28.3
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| ||-.|.++|+.|++.|++|+++.+.
T Consensus 6 k~ilItGa------------------s~gIG~~la~~l~~~G~~vv~~~~~ 38 (253)
T PRK08642 6 QTVLVTGG------------------SRGLGAAIARAFAREGARVVVNYHQ 38 (253)
T ss_pred CEEEEeCC------------------CCcHHHHHHHHHHHCCCeEEEEcCC
Confidence 89999987 4566999999999999999886653
No 196
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=95.41 E-value=0.065 Score=51.19 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=28.0
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++||||+| ||..|.++|+.|+++|++|+.+.+.
T Consensus 2 ~~vlVtGa------------------tGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGG------------------AGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred cEEEEEcC------------------CcHHHHHHHHHHHHcCCCEEEEEec
Confidence 57899987 8999999999999999987665543
No 197
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=95.37 E-value=0.14 Score=46.99 Aligned_cols=33 Identities=30% Similarity=0.465 Sum_probs=28.0
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.+|||+| |+| .|.++|+.|+++|+.|+++.++
T Consensus 2 ~~~lITGa-----------------s~g-IG~~~a~~l~~~G~~V~~~~~~ 34 (267)
T TIGR02685 2 PAAVVTGA-----------------AKR-IGSSIAVALHQEGYRVVLHYHR 34 (267)
T ss_pred CEEEEeCC-----------------CCc-HHHHHHHHHHhCCCeEEEEcCC
Confidence 57888888 655 6999999999999999988654
No 198
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=95.37 E-value=0.12 Score=48.79 Aligned_cols=39 Identities=41% Similarity=0.442 Sum_probs=34.1
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
.+.| |++|||+| |+|- |.++|+.|++.|+.|+...+...
T Consensus 5 ~l~g--kvalVTG~-----------------s~GI-G~aia~~la~~Ga~v~i~~r~~~ 43 (270)
T KOG0725|consen 5 RLAG--KVALVTGG-----------------SSGI-GKAIALLLAKAGAKVVITGRSEE 43 (270)
T ss_pred cCCC--cEEEEECC-----------------CChH-HHHHHHHHHHCCCEEEEEeCCHH
Confidence 3666 99999999 8886 99999999999999999888643
No 199
>PLN02427 UDP-apiose/xylose synthase
Probab=95.36 E-value=0.066 Score=52.08 Aligned_cols=33 Identities=21% Similarity=0.255 Sum_probs=30.0
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHC-CCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKM-GYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~-Ga~V~~i~g~ 94 (313)
++||||+| ||..|..+++.|+.+ |++|+.+.+.
T Consensus 15 ~~VlVTGg------------------tGfIGs~lv~~L~~~~g~~V~~l~r~ 48 (386)
T PLN02427 15 LTICMIGA------------------GGFIGSHLCEKLMTETPHKVLALDVY 48 (386)
T ss_pred cEEEEECC------------------cchHHHHHHHHHHhcCCCEEEEEecC
Confidence 89999998 899999999999998 5999988764
No 200
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.35 E-value=0.17 Score=48.97 Aligned_cols=34 Identities=32% Similarity=0.424 Sum_probs=29.2
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
+.++||+| .||. |.+.|++++.+|+.|++.++..
T Consensus 36 ~~~vVTGa-----------------nsGI-G~eta~~La~~Ga~Vv~~~R~~ 69 (314)
T KOG1208|consen 36 KVALVTGA-----------------TSGI-GFETARELALRGAHVVLACRNE 69 (314)
T ss_pred cEEEEECC-----------------CCch-HHHHHHHHHhCCCEEEEEeCCH
Confidence 77777776 6665 9999999999999999999864
No 201
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=95.19 E-value=0.064 Score=50.62 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=22.0
Q ss_pred ccHHHHHHHHHHHHCC--CEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMG--YAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~G--a~V~~i~g~ 94 (313)
||..|..|+++|+++| +.|..+...
T Consensus 6 sGflG~~iv~~Ll~~g~~~~Vr~~d~~ 32 (280)
T PF01073_consen 6 SGFLGSHIVRQLLERGYIYEVRVLDRS 32 (280)
T ss_pred CcHHHHHHHHHHHHCCCceEEEEcccc
Confidence 8999999999999999 788777654
No 202
>PRK08324 short chain dehydrogenase; Validated
Probab=95.18 E-value=0.18 Score=53.43 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=31.4
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.+.| |+||||+| +|..|.++|+.|+++|+.|+++.+.
T Consensus 419 ~l~g--k~vLVTGa------------------sggIG~~la~~L~~~Ga~Vvl~~r~ 455 (681)
T PRK08324 419 PLAG--KVALVTGA------------------AGGIGKATAKRLAAEGACVVLADLD 455 (681)
T ss_pred CCCC--CEEEEecC------------------CCHHHHHHHHHHHHCcCEEEEEeCC
Confidence 3445 89999987 5678999999999999999998865
No 203
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=95.15 E-value=0.059 Score=50.80 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=23.1
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+||..|.+|+++|..+|++|+.+.++
T Consensus 8 asG~lG~~l~~~l~~~~~~v~~~~r~ 33 (286)
T PF04321_consen 8 ASGFLGSALARALKERGYEVIATSRS 33 (286)
T ss_dssp TTSHHHHHHHHHHTTTSEEEEEESTT
T ss_pred CCCHHHHHHHHHHhhCCCEEEEeCch
Confidence 38999999999999999999888654
No 204
>PRK06940 short chain dehydrogenase; Provisional
Probab=95.12 E-value=0.19 Score=46.65 Aligned_cols=22 Identities=18% Similarity=0.126 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEecC
Q 021383 72 HRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 72 ~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
-.|.++|+.|. .|+.|+++.+.
T Consensus 12 gIG~~la~~l~-~G~~Vv~~~r~ 33 (275)
T PRK06940 12 GIGQAIARRVG-AGKKVLLADYN 33 (275)
T ss_pred hHHHHHHHHHh-CCCEEEEEeCC
Confidence 47999999996 89999998763
No 205
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=94.84 E-value=0.11 Score=47.86 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=23.2
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
||..|..++++|+++|++|+.+.+.
T Consensus 8 tG~iG~~l~~~l~~~g~~v~~~~r~ 32 (287)
T TIGR01214 8 NGQLGRELVQQLSPEGRVVVALTSS 32 (287)
T ss_pred CCHHHHHHHHHHHhcCCEEEEeCCc
Confidence 7999999999999999999998874
No 206
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=94.71 E-value=0.096 Score=49.98 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=28.9
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCC--CEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMG--YAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~G--a~V~~i~g~ 94 (313)
|+||||+| ||..|.++++.|+++| +.|+.+.+.
T Consensus 5 k~vLVTGa------------------tG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 5 KSILITGG------------------TGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred CEEEEeCC------------------CCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 89999998 6899999999999987 788888754
No 207
>PRK05884 short chain dehydrogenase; Provisional
Probab=94.60 E-value=0.3 Score=43.80 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
||..|.++|+.|+++|++|+++.+.
T Consensus 9 s~giG~~ia~~l~~~g~~v~~~~r~ 33 (223)
T PRK05884 9 DTDLGRTIAEGFRNDGHKVTLVGAR 33 (223)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4568999999999999999998764
No 208
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.54 E-value=0.11 Score=53.71 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=31.6
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
+|+||||+| +|..|.++++.+++.+.+.+.+.+.+.
T Consensus 250 gK~vLVTGa------------------gGSiGsel~~qil~~~p~~i~l~~~~E 285 (588)
T COG1086 250 GKTVLVTGG------------------GGSIGSELCRQILKFNPKEIILFSRDE 285 (588)
T ss_pred CCEEEEeCC------------------CCcHHHHHHHHHHhcCCCEEEEecCch
Confidence 499999998 689999999999999998888877644
No 209
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=94.50 E-value=0.1 Score=54.90 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=31.2
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHC-CCEEEEEecCC
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKM-GYAVIFLYRRG 95 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~-Ga~V~~i~g~~ 95 (313)
.++||||+| ||-.|..++++|+++ ||+|+.+.+..
T Consensus 315 ~~~VLVTGa------------------tGFIGs~Lv~~Ll~~~g~~V~~l~r~~ 350 (660)
T PRK08125 315 RTRVLILGV------------------NGFIGNHLTERLLRDDNYEVYGLDIGS 350 (660)
T ss_pred CCEEEEECC------------------CchHHHHHHHHHHhCCCcEEEEEeCCc
Confidence 489999998 899999999999985 79999998754
No 210
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=94.47 E-value=0.11 Score=45.98 Aligned_cols=27 Identities=37% Similarity=0.534 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
||..|.+++++|+++|+.|+.+.+...
T Consensus 7 tG~iG~~l~~~l~~~g~~v~~~~~~~~ 33 (236)
T PF01370_consen 7 TGFIGSALVRQLLKKGHEVIVLSRSSN 33 (236)
T ss_dssp TSHHHHHHHHHHHHTTTEEEEEESCST
T ss_pred CCHHHHHHHHHHHHcCCcccccccccc
Confidence 899999999999999999998887644
No 211
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=94.35 E-value=0.17 Score=46.68 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.6
Q ss_pred ccHHHHHHHHHHHHCC--CEEEEEec
Q 021383 70 SGHRGAASTEHLIKMG--YAVIFLYR 93 (313)
Q Consensus 70 SG~~G~~lAe~~~~~G--a~V~~i~g 93 (313)
||..|.+++++|++.| ++|+.+.+
T Consensus 8 tG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 8 AGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CchHHHHHHHHHHHhCCCCEEEEecC
Confidence 8999999999999988 78988865
No 212
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=94.25 E-value=0.083 Score=50.79 Aligned_cols=44 Identities=20% Similarity=0.104 Sum_probs=36.3
Q ss_pred HHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 31 EFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 31 ~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++|..+..+++ |+||||+| ||-.|..|+++|+++|++|+.+.+.
T Consensus 5 ~~~~~~~~~~~--~~vlVtGa------------------tGfiG~~lv~~L~~~g~~V~~~d~~ 48 (348)
T PRK15181 5 EELRTKLVLAP--KRWLITGV------------------AGFIGSGLLEELLFLNQTVIGLDNF 48 (348)
T ss_pred hhhhhcccccC--CEEEEECC------------------ccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34444445666 89999998 8999999999999999999988764
No 213
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.22 E-value=0.088 Score=49.31 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=31.8
Q ss_pred CCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 42 ~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.+|+||||+| ||..|..+|++|+.+|++|+.+.+..
T Consensus 3 ~~~~ilVtGa------------------tGfIG~~l~~~L~~~g~~V~~~~r~~ 38 (322)
T PLN02662 3 EGKVVCVTGA------------------SGYIASWLVKLLLQRGYTVKATVRDP 38 (322)
T ss_pred CCCEEEEECC------------------hHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 3489999998 89999999999999999999887653
No 214
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=94.10 E-value=0.46 Score=42.37 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=21.5
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
||-.|.++|+.|+++|++|++++++
T Consensus 7 s~giG~~~a~~l~~~G~~v~~~~~~ 31 (239)
T TIGR01831 7 SRGIGRAIANRLAADGFEICVHYHS 31 (239)
T ss_pred CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 4456999999999999999988764
No 215
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=94.05 E-value=0.52 Score=41.68 Aligned_cols=26 Identities=38% Similarity=0.402 Sum_probs=22.9
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+||..|..+|+.|+++||.|+++.++
T Consensus 6 ~~g~iG~~la~~l~~~G~~v~~~~r~ 31 (239)
T TIGR01830 6 ASRGIGRAIALKLAKEGAKVIITYRS 31 (239)
T ss_pred CCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36678999999999999999999875
No 216
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=93.97 E-value=0.29 Score=45.18 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=24.6
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
||..|..|++.|+.+|++|..+.+...
T Consensus 9 tGfiG~~l~~~L~~~g~~V~~~~r~~~ 35 (314)
T COG0451 9 AGFIGSHLVERLLAAGHDVRGLDRLRD 35 (314)
T ss_pred cccHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 899999999999999999999998543
No 217
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=93.91 E-value=0.19 Score=48.02 Aligned_cols=33 Identities=9% Similarity=0.178 Sum_probs=29.0
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHC-CCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKM-GYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~-Ga~V~~i~g~ 94 (313)
++||||+| ||..|..|+++|+.+ |++|+.+.+.
T Consensus 2 ~~ilVtGa------------------tGfiGs~l~~~L~~~~~~~V~~~~r~ 35 (347)
T PRK11908 2 KKVLILGV------------------NGFIGHHLSKRILETTDWEVYGMDMQ 35 (347)
T ss_pred cEEEEECC------------------CcHHHHHHHHHHHhCCCCeEEEEeCc
Confidence 57999987 899999999999986 7999988763
No 218
>PLN00015 protochlorophyllide reductase
Probab=93.58 E-value=0.37 Score=45.47 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=21.2
Q ss_pred ccHHHHHHHHHHHHCC-CEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMG-YAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~G-a~V~~i~g~ 94 (313)
||-.|.++|+.|+++| +.|+++.+.
T Consensus 6 s~GIG~aia~~l~~~G~~~V~~~~r~ 31 (308)
T PLN00015 6 SSGLGLATAKALAETGKWHVVMACRD 31 (308)
T ss_pred CChHHHHHHHHHHHCCCCEEEEEeCC
Confidence 4456999999999999 999888764
No 219
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=93.54 E-value=0.14 Score=46.04 Aligned_cols=34 Identities=41% Similarity=0.490 Sum_probs=30.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
|+||||+| |+| .|.++|+.|+.+|+.|+++.+..
T Consensus 6 ~~ilITGa-----------------s~G-iG~aia~~l~~~G~~v~~~~~~~ 39 (251)
T COG1028 6 KVALVTGA-----------------SSG-IGRAIARALAREGARVVVAARRS 39 (251)
T ss_pred CEEEEeCC-----------------CCH-HHHHHHHHHHHCCCeEEEEcCCC
Confidence 99999999 665 59999999999999999998864
No 220
>PRK07578 short chain dehydrogenase; Provisional
Probab=93.53 E-value=0.49 Score=41.21 Aligned_cols=24 Identities=38% Similarity=0.278 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
||..|.++|+.|.++ +.|+++.++
T Consensus 9 s~giG~~la~~l~~~-~~vi~~~r~ 32 (199)
T PRK07578 9 SGTIGRAVVAELSKR-HEVITAGRS 32 (199)
T ss_pred CcHHHHHHHHHHHhc-CcEEEEecC
Confidence 566799999999999 999998875
No 221
>PRK12367 short chain dehydrogenase; Provisional
Probab=93.41 E-value=0.12 Score=47.46 Aligned_cols=37 Identities=30% Similarity=0.273 Sum_probs=31.2
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.+.+ |++|||+| ||..|.++|+.|+++|+.|+++.+.
T Consensus 11 ~l~~--k~~lITGa------------------s~gIG~ala~~l~~~G~~Vi~~~r~ 47 (245)
T PRK12367 11 TWQG--KRIGITGA------------------SGALGKALTKAFRAKGAKVIGLTHS 47 (245)
T ss_pred hhCC--CEEEEEcC------------------CcHHHHHHHHHHHHCCCEEEEEECC
Confidence 3555 99999988 4556999999999999999998765
No 222
>PLN02583 cinnamoyl-CoA reductase
Probab=93.40 E-value=0.13 Score=48.33 Aligned_cols=34 Identities=26% Similarity=0.422 Sum_probs=30.9
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+|+||||+| ||..|.++++.|+++||+|+.+.+.
T Consensus 6 ~k~vlVTGa------------------tG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 6 SKSVCVMDA------------------SGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CCEEEEECC------------------CCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 389999998 7999999999999999999998874
No 223
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=93.38 E-value=0.22 Score=45.54 Aligned_cols=28 Identities=36% Similarity=0.406 Sum_probs=25.2
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
+||..|..++++|+++|++|+.+.+...
T Consensus 6 atG~iG~~l~~~L~~~g~~V~~~~r~~~ 33 (292)
T TIGR01777 6 GTGFIGRALTQRLTKDGHEVTILTRSPP 33 (292)
T ss_pred ccchhhHHHHHHHHHcCCEEEEEeCCCC
Confidence 4899999999999999999999998643
No 224
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=93.37 E-value=0.18 Score=47.58 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=31.7
Q ss_pred CCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 42 ~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.+++||||+| ||..|..++++|+++|++|+.+.+..
T Consensus 4 ~~~~vlVTGa------------------tG~iG~~l~~~L~~~g~~V~~~~r~~ 39 (322)
T PLN02986 4 GGKLVCVTGA------------------SGYIASWIVKLLLLRGYTVKATVRDL 39 (322)
T ss_pred CCCEEEEECC------------------CcHHHHHHHHHHHHCCCEEEEEECCC
Confidence 3489999997 89999999999999999999887753
No 225
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=93.31 E-value=0.26 Score=51.83 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=19.8
Q ss_pred CccHHHHHHHHHHHHCCCEEEE
Q 021383 69 SSGHRGAASTEHLIKMGYAVIF 90 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~ 90 (313)
+||..|.+|+++|..+|++|++
T Consensus 388 a~G~iG~~l~~~L~~~g~~v~~ 409 (668)
T PLN02260 388 RTGWIGGLLGKLCEKQGIAYEY 409 (668)
T ss_pred CCchHHHHHHHHHHhCCCeEEe
Confidence 3899999999999999999864
No 226
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.21 E-value=0.18 Score=44.89 Aligned_cols=33 Identities=21% Similarity=0.133 Sum_probs=30.0
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++||||+| ||..|.++|+.|+++|+.|+++.+.
T Consensus 6 ~~vlItGa------------------~g~iG~~~a~~l~~~G~~V~~~~r~ 38 (238)
T PRK05786 6 KKVAIIGV------------------SEGLGYAVAYFALKEGAQVCINSRN 38 (238)
T ss_pred cEEEEECC------------------CchHHHHHHHHHHHCCCEEEEEeCC
Confidence 89999998 5778999999999999999998875
No 227
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=93.20 E-value=0.36 Score=42.25 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=19.9
Q ss_pred ccHHHHHHHHHHHHCCC-EEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGY-AVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga-~V~~i~g~ 94 (313)
+|-.|..+|++++.+|+ .|+++.++
T Consensus 9 ~gglg~~la~~La~~~~~~~il~~r~ 34 (181)
T PF08659_consen 9 LGGLGQSLARWLAERGARRLILLGRS 34 (181)
T ss_dssp TSHHHHHHHHHHHHTT-SEEEEEESS
T ss_pred ccHHHHHHHHHHHHcCCCEEEEeccC
Confidence 68899999999999987 46666665
No 228
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=92.97 E-value=3 Score=36.73 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=36.4
Q ss_pred HHHHHHHHhc-cCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 26 SQKLKEFIAL-NSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 26 ~~~v~~~l~~-~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+..+.+.+.+ ..++.+ ++++|.+| +|..|.++|+.|+..|+.|+++.+.
T Consensus 12 v~~~~~~l~~~~~~l~~--~~vlVlGg------------------tG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 12 VAAAGKALELMGKDLKG--KTAVVLGG------------------TGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHhCcCCCC--CEEEEECC------------------CCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3344444432 224555 89999987 6889999999999999999998764
No 229
>PRK06924 short chain dehydrogenase; Provisional
Probab=92.96 E-value=0.17 Score=45.55 Aligned_cols=33 Identities=30% Similarity=0.360 Sum_probs=28.7
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|.++|++|+++|++|+++.+.
T Consensus 2 k~vlItGa------------------sggiG~~ia~~l~~~g~~V~~~~r~ 34 (251)
T PRK06924 2 RYVIITGT------------------SQGLGEAIANQLLEKGTHVISISRT 34 (251)
T ss_pred cEEEEecC------------------CchHHHHHHHHHHhcCCEEEEEeCC
Confidence 57888876 5778999999999999999998875
No 230
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=92.71 E-value=0.71 Score=43.33 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=23.7
Q ss_pred CccHHHHHHHHHHHHCC--CEEEEEecCC
Q 021383 69 SSGHRGAASTEHLIKMG--YAVIFLYRRG 95 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~G--a~V~~i~g~~ 95 (313)
+||..|..++++|+++| +.|+.+.+..
T Consensus 7 atG~lG~~l~~~L~~~g~~~~V~~l~R~~ 35 (367)
T TIGR01746 7 ATGFLGAYLLEELLRRSTQAKVICLVRAA 35 (367)
T ss_pred cchHHHHHHHHHHHhCCCCCEEEEEEccC
Confidence 48999999999999999 7799888753
No 231
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=92.71 E-value=0.23 Score=46.84 Aligned_cols=34 Identities=29% Similarity=0.393 Sum_probs=30.1
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+|+||||+| +|..|.++|+.|+.+|++|+.+.+.
T Consensus 5 ~k~vlVtG~------------------~G~IG~~l~~~L~~~G~~V~~~~r~ 38 (325)
T PLN02989 5 GKVVCVTGA------------------SGYIASWIVKLLLFRGYTINATVRD 38 (325)
T ss_pred CCEEEEECC------------------chHHHHHHHHHHHHCCCEEEEEEcC
Confidence 489999987 6889999999999999999887654
No 232
>PRK06101 short chain dehydrogenase; Provisional
Probab=92.31 E-value=0.23 Score=44.71 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=28.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+++|||+| ||-.|.++|+.|+.+|++|+++.+.
T Consensus 2 ~~vlItGa------------------s~giG~~la~~L~~~G~~V~~~~r~ 34 (240)
T PRK06101 2 TAVLITGA------------------TSGIGKQLALDYAKQGWQVIACGRN 34 (240)
T ss_pred cEEEEEcC------------------CcHHHHHHHHHHHhCCCEEEEEECC
Confidence 67889987 5667999999999999999998874
No 233
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.27 E-value=0.2 Score=46.46 Aligned_cols=37 Identities=30% Similarity=0.303 Sum_probs=32.9
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
.|+||||+| |+|-.|.++|.+|.+.|+.|.--+|..+
T Consensus 7 ~k~VlItgc-----------------s~GGIG~ala~ef~~~G~~V~AtaR~~e 43 (289)
T KOG1209|consen 7 PKKVLITGC-----------------SSGGIGYALAKEFARNGYLVYATARRLE 43 (289)
T ss_pred CCeEEEeec-----------------CCcchhHHHHHHHHhCCeEEEEEccccc
Confidence 389999999 9999999999999999999987777543
No 234
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=92.21 E-value=0.27 Score=42.13 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=25.8
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
.||..|..++++|+++|++|+.+.|+.+
T Consensus 6 atG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 6 ATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp TTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred CCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 4999999999999999999999998744
No 235
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=92.20 E-value=0.59 Score=44.52 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=25.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEe
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~ 92 (313)
++||||+| ||..|..++++|+.+|+.+++..
T Consensus 1 mkilITGg------------------tG~iG~~l~~~L~~~g~~~v~~~ 31 (352)
T PRK10084 1 MKILVTGG------------------AGFIGSAVVRHIINNTQDSVVNV 31 (352)
T ss_pred CeEEEECC------------------CcHHhHHHHHHHHHhCCCeEEEe
Confidence 36899988 89999999999999998754443
No 236
>PLN02572 UDP-sulfoquinovose synthase
Probab=92.03 E-value=0.24 Score=49.77 Aligned_cols=33 Identities=33% Similarity=0.477 Sum_probs=29.7
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
+++||||+| ||..|..|+++|+.+|++|+.+.+
T Consensus 47 ~k~VLVTGa------------------tGfIGs~Lv~~L~~~G~~V~~~d~ 79 (442)
T PLN02572 47 KKKVMVIGG------------------DGYCGWATALHLSKRGYEVAIVDN 79 (442)
T ss_pred CCEEEEECC------------------CcHHHHHHHHHHHHCCCeEEEEec
Confidence 389999987 899999999999999999998753
No 237
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=92.00 E-value=0.25 Score=47.39 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=29.6
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEE
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIF 90 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~ 90 (313)
++.| |++|||+|. .|+|. |.++|+.|++.||.|++
T Consensus 6 ~l~g--k~alITGa~---------------~s~GI-G~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 6 DLRG--KRAFIAGVA---------------DDNGY-GWAIAKALAAAGAEILV 40 (303)
T ss_pred CCCC--CEEEEeCCC---------------CCCcH-HHHHHHHHHHCCCEEEE
Confidence 4666 999999992 25665 99999999999999998
No 238
>PRK07102 short chain dehydrogenase; Provisional
Probab=91.98 E-value=0.27 Score=44.18 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=29.3
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+|+||+| ||..|.++|++|+++|+.|+++.+.
T Consensus 2 ~~vlItGa------------------s~giG~~~a~~l~~~G~~Vi~~~r~ 34 (243)
T PRK07102 2 KKILIIGA------------------TSDIARACARRYAAAGARLYLAARD 34 (243)
T ss_pred cEEEEEcC------------------CcHHHHHHHHHHHhcCCEEEEEeCC
Confidence 67899988 5777999999999999999999874
No 239
>PRK09291 short chain dehydrogenase; Provisional
Probab=91.92 E-value=0.29 Score=44.03 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=29.0
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|.++|++|+.+|+.|+.+.+.
T Consensus 3 ~~vlVtGa------------------sg~iG~~ia~~l~~~G~~v~~~~r~ 35 (257)
T PRK09291 3 KTILITGA------------------GSGFGREVALRLARKGHNVIAGVQI 35 (257)
T ss_pred CEEEEeCC------------------CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 78999987 6778999999999999999988764
No 240
>PLN02650 dihydroflavonol-4-reductase
Probab=91.90 E-value=0.26 Score=47.15 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=30.8
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+|+||||+| ||..|..++++|+.+|++|+.+.+.
T Consensus 5 ~k~iLVTGa------------------tGfIGs~l~~~L~~~G~~V~~~~r~ 38 (351)
T PLN02650 5 KETVCVTGA------------------SGFIGSWLVMRLLERGYTVRATVRD 38 (351)
T ss_pred CCEEEEeCC------------------cHHHHHHHHHHHHHCCCEEEEEEcC
Confidence 389999998 8999999999999999999988764
No 241
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=91.82 E-value=0.93 Score=40.31 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=23.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCC--EEEEEec
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGY--AVIFLYR 93 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga--~V~~i~g 93 (313)
|+||||+| ||..|.++|+.|+++|+ .|+...+
T Consensus 1 ~~vlItGa------------------s~gIG~~ia~~l~~~~~~~~v~~~~~ 34 (235)
T PRK09009 1 MNILIVGG------------------SGGIGKAMVKQLLERYPDATVHATYR 34 (235)
T ss_pred CEEEEECC------------------CChHHHHHHHHHHHhCCCCEEEEEcc
Confidence 47888887 45569999999999864 4444443
No 242
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=91.71 E-value=1 Score=40.88 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHHH----CCCEEEEEecC
Q 021383 71 GHRGAASTEHLIK----MGYAVIFLYRR 94 (313)
Q Consensus 71 G~~G~~lAe~~~~----~Ga~V~~i~g~ 94 (313)
|-.|.++|+.|++ .|+.|+++.+.
T Consensus 10 ~GIG~~~a~~la~~~~~~g~~V~~~~r~ 37 (256)
T TIGR01500 10 RGFGRTIAQELAKCLKSPGSVLVLSARN 37 (256)
T ss_pred CchHHHHHHHHHHhhccCCcEEEEEEcC
Confidence 4469999999997 79999999874
No 243
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=91.67 E-value=0.8 Score=42.34 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEec
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
||..|..+++.|+++|++|+.+.+
T Consensus 8 tG~iG~~l~~~l~~~g~~V~~~~~ 31 (328)
T TIGR01179 8 AGYIGSHTVRQLLESGHEVVVLDN 31 (328)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeC
Confidence 899999999999999999987754
No 244
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.67 E-value=0.29 Score=46.72 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=30.0
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEe
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~ 92 (313)
++.| |++|||+|+. |+| .|.++|+.|+++||.|++-.
T Consensus 5 ~~~g--k~alITGa~~---------------~~G-IG~a~A~~la~~Ga~Vvv~~ 41 (299)
T PRK06300 5 DLTG--KIAFIAGIGD---------------DQG-YGWGIAKALAEAGATILVGT 41 (299)
T ss_pred CCCC--CEEEEeCCCC---------------CCC-HHHHHHHHHHHCCCEEEEEe
Confidence 4556 9999999941 255 59999999999999998844
No 245
>PLN02686 cinnamoyl-CoA reductase
Probab=91.66 E-value=0.3 Score=47.58 Aligned_cols=34 Identities=32% Similarity=0.586 Sum_probs=29.0
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+|+||||+| +|..|..+++.|+.+||+|+.+.+.
T Consensus 53 ~k~VLVTGa------------------tGfIG~~lv~~L~~~G~~V~~~~r~ 86 (367)
T PLN02686 53 ARLVCVTGG------------------VSFLGLAIVDRLLRHGYSVRIAVDT 86 (367)
T ss_pred CCEEEEECC------------------chHHHHHHHHHHHHCCCEEEEEeCC
Confidence 367777776 7999999999999999999887664
No 246
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.62 E-value=0.3 Score=46.24 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
||..|..++++|+.+|++|+.+.++.
T Consensus 9 tG~iG~~lv~~Ll~~g~~V~~l~R~~ 34 (317)
T CHL00194 9 TGTLGRQIVRQALDEGYQVRCLVRNL 34 (317)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEEcCh
Confidence 89999999999999999999998864
No 247
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=91.41 E-value=0.6 Score=43.32 Aligned_cols=25 Identities=16% Similarity=0.272 Sum_probs=21.3
Q ss_pred ccHHHHHHHHHHHHCCC-EEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGY-AVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga-~V~~i~g~ 94 (313)
||..|..+|+.|.++|+ +|+.+.++
T Consensus 7 tG~iG~~l~~~L~~~g~~~v~~~~~~ 32 (314)
T TIGR02197 7 AGFIGSNLVKALNERGITDILVVDNL 32 (314)
T ss_pred cchhhHHHHHHHHHcCCceEEEEecC
Confidence 89999999999999998 67766543
No 248
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=91.31 E-value=0.45 Score=45.97 Aligned_cols=112 Identities=20% Similarity=0.237 Sum_probs=70.2
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecCCCCCCccCCCCCcccchhhhccCCccEEeeCccHHHHHHHHHHHHHhhhcccccc
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLLLK 149 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~m~~a~~~~~~~~~~~~l~~ 149 (313)
|..-|.+.|++|++||..|.+|+|..+- .+.+.+.+.+-++ -.-|...
T Consensus 58 TDGIGKayA~eLAkrG~nvvLIsRt~~K------------------------------L~~v~kEI~~~~~--vev~~i~ 105 (312)
T KOG1014|consen 58 TDGIGKAYARELAKRGFNVVLISRTQEK------------------------------LEAVAKEIEEKYK--VEVRIIA 105 (312)
T ss_pred CCcchHHHHHHHHHcCCEEEEEeCCHHH------------------------------HHHHHHHHHHHhC--cEEEEEE
Confidence 5567999999999999999999985321 1223233322221 2467888
Q ss_pred cccccHHH-HHHHHHHHHHHhhhcCCcceeeeeeccCCCcCCccccccccccCCCCCceEEEEeCcchhHHh
Q 021383 150 LPFTTIFE-YLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGSGPLDMQLLQVPKMLSVL 220 (313)
Q Consensus 150 ~~f~t~~d-y~~~l~~i~~~l~~~~~~d~~i~aAAVsDf~v~~~~~~~~KI~s~~~~l~l~L~~~PKiL~~i 220 (313)
+.|+.-.+ |...++.+. ..+..++|.++..+=.++ +...+-...+-.+-+++.+.++.++-+.+
T Consensus 106 ~Dft~~~~~ye~i~~~l~-----~~~VgILVNNvG~~~~~P--~~f~~~~~~~~~~ii~vN~~~~~~~t~~i 170 (312)
T KOG1014|consen 106 IDFTKGDEVYEKLLEKLA-----GLDVGILVNNVGMSYDYP--ESFLKYPEGELQNIINVNILSVTLLTQLI 170 (312)
T ss_pred EecCCCchhHHHHHHHhc-----CCceEEEEecccccCCCc--HHHHhCchhhhhheeEEecchHHHHHHHh
Confidence 88988776 666665442 335678999999886552 33322222122345778888877765544
No 249
>PLN02240 UDP-glucose 4-epimerase
Probab=91.15 E-value=0.39 Score=45.61 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=29.5
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
|+||||+| ||..|..+++.|+++|++|+.+.+
T Consensus 6 ~~vlItGa------------------tG~iG~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 6 RTILVTGG------------------AGYIGSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CEEEEECC------------------CChHHHHHHHHHHHCCCEEEEEeC
Confidence 89999987 799999999999999999999865
No 250
>PLN00016 RNA-binding protein; Provisional
Probab=91.15 E-value=0.26 Score=47.93 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=32.4
Q ss_pred CceEEEe---cCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 43 RRVACVT---SGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 43 ~k~VLIT---sGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
.++|||| +| +||..|..++++|++.||+|+.+.+...
T Consensus 52 ~~~VLVt~~~~G-----------------atG~iG~~lv~~L~~~G~~V~~l~R~~~ 91 (378)
T PLN00016 52 KKKVLIVNTNSG-----------------GHAFIGFYLAKELVKAGHEVTLFTRGKE 91 (378)
T ss_pred cceEEEEeccCC-----------------CceeEhHHHHHHHHHCCCEEEEEecCCc
Confidence 3789999 45 5899999999999999999999998643
No 251
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=91.08 E-value=0.57 Score=44.75 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.9
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++|+.|.+|++.+. .+++|+.+.++
T Consensus 8 ~~GqLG~~L~~~l~-~~~~v~a~~~~ 32 (281)
T COG1091 8 ANGQLGTELRRALP-GEFEVIATDRA 32 (281)
T ss_pred CCChHHHHHHHHhC-CCceEEeccCc
Confidence 48999999999998 77999988764
No 252
>PLN02214 cinnamoyl-CoA reductase
Probab=91.03 E-value=0.41 Score=45.98 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=30.6
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++||||+| ||..|..++++|+++|++|+.+.+.
T Consensus 11 ~~vlVTGa------------------tGfIG~~l~~~L~~~G~~V~~~~r~ 43 (342)
T PLN02214 11 KTVCVTGA------------------GGYIASWIVKILLERGYTVKGTVRN 43 (342)
T ss_pred CEEEEECC------------------CcHHHHHHHHHHHHCcCEEEEEeCC
Confidence 88999988 7999999999999999999998875
No 253
>PRK08017 oxidoreductase; Provisional
Probab=90.83 E-value=0.43 Score=42.93 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=28.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+||||+| ||..|.++|+.|+++|+.|+.+.+.
T Consensus 3 k~vlVtGa------------------sg~IG~~la~~l~~~g~~v~~~~r~ 35 (256)
T PRK08017 3 KSVLITGC------------------SSGIGLEAALELKRRGYRVLAACRK 35 (256)
T ss_pred CEEEEECC------------------CChHHHHHHHHHHHCCCEEEEEeCC
Confidence 67899887 5778999999999999999888764
No 254
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=90.68 E-value=0.45 Score=43.35 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=30.5
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.++||||+| ||..|..++++|+.+||.|+.+.+.
T Consensus 17 ~~~ilItGa------------------sG~iG~~l~~~L~~~g~~V~~~~R~ 50 (251)
T PLN00141 17 TKTVFVAGA------------------TGRTGKRIVEQLLAKGFAVKAGVRD 50 (251)
T ss_pred CCeEEEECC------------------CcHHHHHHHHHHHhCCCEEEEEecC
Confidence 389999986 8999999999999999999988765
No 255
>PRK07023 short chain dehydrogenase; Provisional
Probab=90.41 E-value=0.43 Score=42.79 Aligned_cols=33 Identities=39% Similarity=0.343 Sum_probs=28.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+++|||+| ||..|.++|++|+++|+.|+++.++
T Consensus 2 ~~vlItGa------------------sggiG~~ia~~l~~~G~~v~~~~r~ 34 (243)
T PRK07023 2 VRAIVTGH------------------SRGLGAALAEQLLQPGIAVLGVARS 34 (243)
T ss_pred ceEEEecC------------------CcchHHHHHHHHHhCCCEEEEEecC
Confidence 46888887 5667999999999999999998875
No 256
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=90.41 E-value=0.54 Score=46.36 Aligned_cols=36 Identities=22% Similarity=0.365 Sum_probs=32.1
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
+++||||+| ||..|..++++|+++|++|+.+.++.+
T Consensus 60 ~~kVLVtGa------------------tG~IG~~l~~~Ll~~G~~V~~l~R~~~ 95 (390)
T PLN02657 60 DVTVLVVGA------------------TGYIGKFVVRELVRRGYNVVAVAREKS 95 (390)
T ss_pred CCEEEEECC------------------CcHHHHHHHHHHHHCCCEEEEEEechh
Confidence 489999987 899999999999999999999998643
No 257
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=90.38 E-value=0.51 Score=47.26 Aligned_cols=33 Identities=30% Similarity=0.366 Sum_probs=29.5
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+|+||+| ||..|.++|++++++|+.|+.+.+.
T Consensus 179 K~VLITGA------------------SgGIG~aLA~~La~~G~~Vi~l~r~ 211 (406)
T PRK07424 179 KTVAVTGA------------------SGTLGQALLKELHQQGAKVVALTSN 211 (406)
T ss_pred CEEEEeCC------------------CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 89999987 5677999999999999999998764
No 258
>PRK05865 hypothetical protein; Provisional
Probab=90.36 E-value=1.1 Score=49.06 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
||..|..++++|+.+|++|+.+.+.
T Consensus 9 TGfIGs~La~~Ll~~G~~Vv~l~R~ 33 (854)
T PRK05865 9 SGVLGRGLTARLLSQGHEVVGIARH 33 (854)
T ss_pred CCHHHHHHHHHHHHCcCEEEEEECC
Confidence 7999999999999999999998875
No 259
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=90.35 E-value=0.43 Score=49.82 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=30.3
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+|+||||+| +|..|.+++++|+++|+.|+.+.+.
T Consensus 80 gKvVLVTGA------------------TGgIG~aLAr~LLk~G~~Vval~Rn 113 (576)
T PLN03209 80 EDLAFVAGA------------------TGKVGSRTVRELLKLGFRVRAGVRS 113 (576)
T ss_pred CCEEEEECC------------------CCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 488889887 6889999999999999999998875
No 260
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=90.04 E-value=1.3 Score=46.56 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=28.5
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHC--CCEEEEEec
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKM--GYAVIFLYR 93 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~--Ga~V~~i~g 93 (313)
|+||||+| ||..|..+++.|+++ |++|+.+.+
T Consensus 7 ~~VLVTGa------------------tGfIG~~lv~~Ll~~g~~~~V~~~d~ 40 (668)
T PLN02260 7 KNILITGA------------------AGFIASHVANRLIRNYPDYKIVVLDK 40 (668)
T ss_pred CEEEEECC------------------CcHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 89999998 899999999999998 678877765
No 261
>PLN02206 UDP-glucuronate decarboxylase
Probab=90.04 E-value=0.5 Score=47.59 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=29.9
Q ss_pred CCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 42 ~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
++++||||+| ||-.|..|+++|+++|++|+.+.+
T Consensus 118 ~~~kILVTGa------------------tGfIGs~Lv~~Ll~~G~~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTGG------------------AGFVGSHLVDRLMARGDSVIVVDN 151 (442)
T ss_pred CCCEEEEECc------------------ccHHHHHHHHHHHHCcCEEEEEeC
Confidence 3478888887 999999999999999999998864
No 262
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=90.03 E-value=0.35 Score=47.12 Aligned_cols=39 Identities=13% Similarity=0.172 Sum_probs=35.2
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
|+|+||+|||=-.|=+ |.++|+++.++||+|.|+.++..
T Consensus 2 ~~i~~~~GGTGGHi~P--------------ala~a~~l~~~g~~v~~vg~~~~ 40 (352)
T PRK12446 2 KKIVFTGGGSAGHVTP--------------NLAIIPYLKEDNWDISYIGSHQG 40 (352)
T ss_pred CeEEEEcCCcHHHHHH--------------HHHHHHHHHhCCCEEEEEECCCc
Confidence 6899999999999873 99999999999999999987654
No 263
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=89.83 E-value=0.008 Score=59.79 Aligned_cols=215 Identities=19% Similarity=0.126 Sum_probs=114.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCccCCCCCcccchhhhccCCccEE-
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQ- 122 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~- 122 (313)
..++|+|++|...|.+..+++.+|.+|+..+++.+..++.-+.++.++..+....+..+..+ .+...+.+.. +...
T Consensus 80 adl~lvaPaTan~i~Kla~g~aD~~~t~~~~a~~~p~~~aPamn~~M~~~~~tq~n~~~l~~--~g~~~I~p~~-~~~a~ 156 (392)
T COG0452 80 ADLLLVAPATANTIAKLAVGIADNLSTTTLLAAKAPLVLAPAMNVIMYTHPATQENLQRLKS--EGVLFIEPIE-GELAD 156 (392)
T ss_pred cCEEEecCCChhHHHHHHHhhhccHHHHHHHHhcCcEEEecCcCHHHhhCHHHHHHHHHHHH--CCcEEECccc-ccccc
Confidence 57999999999999988899999999999999988666666666666665433222110000 0111111100 0000
Q ss_pred e---eCccHHHHHHH-HHHHHHhhhcccccccccccHHHHHHHHHHHHHHhhhcCCcceeeeeecc---CCCcCCccccc
Q 021383 123 V---CQPYSEAVKRA-IRDHHAAVAGGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAV---SDFYVPWKSMA 195 (313)
Q Consensus 123 v---~~~~~~~m~~a-~~~~~~~~~~~~l~~~~f~t~~dy~~~l~~i~~~l~~~~~~d~~i~aAAV---sDf~v~~~~~~ 195 (313)
+ .-...+++... ...+....-.++-.+++.....||.+-.+.+.... -+..+..+..||. ++... .....
T Consensus 157 ~g~g~~~e~~~Iv~~~~~~~~~~~l~gk~Vlit~G~t~E~idpvr~itn~s--sGk~g~alA~a~~~~GA~V~l-v~g~~ 233 (392)
T COG0452 157 VGDGRLAEPEEIVEAALALLKTPDLKGKKVLITAGPTREYIDPVRFISNRS--SGKMGFALAAAAKRRGASVTL-VSGPT 233 (392)
T ss_pred cccccCCCHHHHHHHHHhhcccccccCcEEEecCCCCccCCccceeeeccc--cccccHHHHHHHHHcCCceEE-ecCCC
Confidence 0 00012223222 22222111257778888888888888777665432 2333322222222 22221 00111
Q ss_pred cccccCCCC-----------------CceEEEEeCcchhHHhhcccCCCeEEEE----EecccCc-hHHHHHHHHHHHHc
Q 021383 196 EHKIQSGSG-----------------PLDMQLLQVPKMLSVLRKEWAPMAFCIS----FKLETDA-EILLEKADMARKKY 253 (313)
Q Consensus 196 ~~KI~s~~~-----------------~l~l~L~~~PKiL~~i~~~~~p~~~lVg----FKlEt~~-e~li~~A~~kL~~~ 253 (313)
.-|+.++.. .....+...+..++..+..|.++..+.+ |++|... +.++.........+
T Consensus 234 ~~~~p~~v~~v~v~sa~em~~av~~~~~~~d~~i~~aAvaD~~~~~~~~~Kikk~~~~~~l~l~~n~dil~~~~~~~~~~ 313 (392)
T COG0452 234 SLKIPAGVEVVKVESAEEMLNAVLEAALPADIFISAAAVADYRPKWVAEAKIKKQGEPFKLELVPNPDILASVARDYPKK 313 (392)
T ss_pred cCCCCCcceeeeeeeHHHHHHHHHhcccccCEEEEeccccccccccccccceeecCCcceEEeccChhHHHHHHhhccCC
Confidence 113333221 1223455566666666656767778888 9999885 45666665554444
Q ss_pred CCcEEEEecCC
Q 021383 254 GMHAVVANELL 264 (313)
Q Consensus 254 ~~D~VVaN~l~ 264 (313)
+..+..+....
T Consensus 314 ~~~Vgfaaet~ 324 (392)
T COG0452 314 NILVGFAAETG 324 (392)
T ss_pred CeEEEEeccch
Confidence 43444556554
No 264
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=89.73 E-value=0.24 Score=40.62 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=28.1
Q ss_pred EEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 46 ACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 46 VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|||++|||.-.+=+ ..+||++|.++||+|++...+
T Consensus 1 Ili~~~Gt~Ghv~P--------------~lala~~L~~rGh~V~~~~~~ 35 (139)
T PF03033_consen 1 ILIATGGTRGHVYP--------------FLALARALRRRGHEVRLATPP 35 (139)
T ss_dssp EEEEEESSHHHHHH--------------HHHHHHHHHHTT-EEEEEETG
T ss_pred CEEEEcCChhHHHH--------------HHHHHHHHhccCCeEEEeecc
Confidence 67888888777763 789999999999999977754
No 265
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=89.57 E-value=1.5 Score=44.55 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=46.5
Q ss_pred ceEEEecCCccc-----ccCCCCeeeeccCC---------------ccHHHHHHHHHHHHCCCEEEEEecCCCCCC
Q 021383 44 RVACVTSGGTTV-----PLEQRCVRYIDNFS---------------SGHRGAASTEHLIKMGYAVIFLYRRGTCEP 99 (313)
Q Consensus 44 k~VLITsGgT~e-----pID~~~VR~ItN~S---------------SG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P 99 (313)
++|+|.+|+... ++| ..|+++|.. .|--|..+|..|.+.|.+||+|.+...++|
T Consensus 137 ~~iiIATGS~p~~~~~~~~~--~~~~~~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp 210 (454)
T COG1249 137 DNIIIATGSRPRIPPGPGID--GARILDSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred CEEEEcCCCCCcCCCCCCCC--CCeEEechhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 778999998754 477 899999855 799999999999999999999999877766
No 266
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=89.38 E-value=1 Score=40.43 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=25.4
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.||..|..++++++..|+.|..++|+.
T Consensus 6 atG~~G~~v~~~L~~~~~~V~~l~R~~ 32 (233)
T PF05368_consen 6 ATGNQGRSVVRALLSAGFSVRALVRDP 32 (233)
T ss_dssp TTSHHHHHHHHHHHHTTGCEEEEESSS
T ss_pred CccHHHHHHHHHHHhCCCCcEEEEecc
Confidence 499999999999999999999999975
No 267
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=89.04 E-value=0.57 Score=43.29 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=25.5
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
+||..|..++++|+++|++|+.+.++.+
T Consensus 7 atG~iG~~vv~~L~~~g~~V~~~~R~~~ 34 (285)
T TIGR03649 7 GTGKTASRIARLLQAASVPFLVASRSSS 34 (285)
T ss_pred CCChHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 4999999999999999999999998753
No 268
>PRK14982 acyl-ACP reductase; Provisional
Probab=88.83 E-value=1.8 Score=42.41 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=29.3
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHC-C-CEEEEEec
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKM-G-YAVIFLYR 93 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~-G-a~V~~i~g 93 (313)
++.+ |+|+||++ +|.+|..+|+.++.+ | ..|+++.+
T Consensus 152 ~l~~--k~VLVtGA------------------tG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 152 DLSK--ATVAVVGA------------------TGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred CcCC--CEEEEEcc------------------ChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 5666 99999986 799999999999864 6 57777765
No 269
>PRK07041 short chain dehydrogenase; Provisional
Probab=88.68 E-value=3 Score=36.83 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=23.2
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.||..|.++|+.|+++|++|+++.++
T Consensus 5 as~~iG~~~a~~l~~~G~~v~~~~r~ 30 (230)
T PRK07041 5 GSSGIGLALARAFAAEGARVTIASRS 30 (230)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 46778999999999999999999875
No 270
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=88.55 E-value=1.9 Score=40.34 Aligned_cols=36 Identities=31% Similarity=0.506 Sum_probs=30.5
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.| |++|+|+| .+|. |.+.+++|+.+|+.|..|--.
T Consensus 3 ~tG--Kna~vtgg-----------------agGI-Gl~~sk~Ll~kgik~~~i~~~ 38 (261)
T KOG4169|consen 3 LTG--KNALVTGG-----------------AGGI-GLATSKALLEKGIKVLVIDDS 38 (261)
T ss_pred ccC--ceEEEecC-----------------Cchh-hHHHHHHHHHcCchheeehhh
Confidence 445 99999999 5565 999999999999999888754
No 271
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=88.55 E-value=1.2 Score=42.77 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=19.0
Q ss_pred ccHHHHHHHHHHHHCCCE-EEEEec
Q 021383 70 SGHRGAASTEHLIKMGYA-VIFLYR 93 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~-V~~i~g 93 (313)
+|.-|..|++++++.|.. ++++..
T Consensus 7 ~GSIGseL~rql~~~~p~~lil~d~ 31 (293)
T PF02719_consen 7 GGSIGSELVRQLLRYGPKKLILFDR 31 (293)
T ss_dssp TSHHHHHHHHHHHCCB-SEEEEEES
T ss_pred ccHHHHHHHHHHHhcCCCeEEEeCC
Confidence 799999999999999864 555554
No 272
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=88.21 E-value=0.87 Score=42.94 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.7
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
||..|..+|++|+++|++|+.+.+.
T Consensus 9 tG~iG~~l~~~L~~~g~~V~~~~~~ 33 (338)
T PRK10675 9 SGYIGSHTCVQLLQNGHDVVILDNL 33 (338)
T ss_pred CChHHHHHHHHHHHCCCeEEEEecC
Confidence 7999999999999999999998653
No 273
>PRK06953 short chain dehydrogenase; Provisional
Probab=88.07 E-value=0.81 Score=40.57 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=28.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+++|||+| ||-.|.++|++|++.|++|+++.+.
T Consensus 2 ~~vlvtG~------------------sg~iG~~la~~L~~~G~~v~~~~r~ 34 (222)
T PRK06953 2 KTVLIVGA------------------SRGIGREFVRQYRADGWRVIATARD 34 (222)
T ss_pred ceEEEEcC------------------CCchhHHHHHHHHhCCCEEEEEECC
Confidence 57888887 5677999999999999999998764
No 274
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=88.07 E-value=0.51 Score=42.74 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=28.0
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecCCCCCC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRRGTCEP 99 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P 99 (313)
.||+-|..|++++.+||++||-|.|..+..|
T Consensus 8 AsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~ 38 (211)
T COG2910 8 ASGKAGSRILKEALKRGHEVTAIVRNASKLA 38 (211)
T ss_pred cCchhHHHHHHHHHhCCCeeEEEEeChHhcc
Confidence 6999999999999999999999999866544
No 275
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=87.65 E-value=0.94 Score=45.55 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=30.1
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.++||||+| ||..|..|+++|+++|++|+.+.+.
T Consensus 120 ~mkILVTGa------------------tGFIGs~Lv~~Ll~~G~~V~~ldr~ 153 (436)
T PLN02166 120 RLRIVVTGG------------------AGFVGSHLVDKLIGRGDEVIVIDNF 153 (436)
T ss_pred CCEEEEECC------------------ccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 367888887 8999999999999999999998754
No 276
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.89 E-value=4 Score=39.41 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=44.5
Q ss_pred hhhccCC--CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEE
Q 021383 11 SFFDSAP--PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAV 88 (313)
Q Consensus 11 ~ff~~~~--~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V 88 (313)
+.|.+.. .|..|..|.+.++.+ +.++.| |+|.|-+ -||.||.-+|..|+++||.|
T Consensus 130 ~l~~~~~~~~PcTp~aii~lL~~~---~i~l~G--k~V~vIG------------------~s~ivG~PmA~~L~~~gatV 186 (301)
T PRK14194 130 GLSQGRDVLTPCTPSGCLRLLEDT---CGDLTG--KHAVVIG------------------RSNIVGKPMAALLLQAHCSV 186 (301)
T ss_pred HHhcCCCCCCCCcHHHHHHHHHHh---CCCCCC--CEEEEEC------------------CCCccHHHHHHHHHHCCCEE
Confidence 3444443 366677777655543 235666 8887744 46899999999999999999
Q ss_pred EEEecC
Q 021383 89 IFLYRR 94 (313)
Q Consensus 89 ~~i~g~ 94 (313)
++.|+.
T Consensus 187 tv~~~~ 192 (301)
T PRK14194 187 TVVHSR 192 (301)
T ss_pred EEECCC
Confidence 999875
No 277
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=86.61 E-value=0.39 Score=43.95 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=23.3
Q ss_pred CccHHHHHHHHHHHHCCC--EEEEEecCCC
Q 021383 69 SSGHRGAASTEHLIKMGY--AVIFLYRRGT 96 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga--~V~~i~g~~s 96 (313)
+||..|..|.+++++.+. .|+++.|..+
T Consensus 4 aTGflG~~ll~~Ll~~~~~~~I~cLvR~~~ 33 (249)
T PF07993_consen 4 ATGFLGSHLLEELLRQPPDVKIYCLVRASS 33 (249)
T ss_dssp TTSHHHHHHHHHHHHHS-TTEEEEEE-SSS
T ss_pred CCcHHHHHHHHHHHcCCCCcEEEEEEeCcc
Confidence 799999999999999987 8999998653
No 278
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=86.51 E-value=4.1 Score=39.59 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=28.9
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
++||||+| .|--|...+.+|+..|++|+.+-.
T Consensus 1 ~~iLVtGG------------------AGYIGSHtv~~Ll~~G~~vvV~DN 32 (329)
T COG1087 1 MKVLVTGG------------------AGYIGSHTVRQLLKTGHEVVVLDN 32 (329)
T ss_pred CeEEEecC------------------cchhHHHHHHHHHHCCCeEEEEec
Confidence 47999999 588899999999999999999875
No 279
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=86.19 E-value=1 Score=42.02 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
||..|..|++.|+++|++|+.+.+.
T Consensus 8 ~GfiG~~l~~~L~~~g~~~v~~~~~ 32 (308)
T PRK11150 8 AGFIGSNIVKALNDKGITDILVVDN 32 (308)
T ss_pred CcHHHHHHHHHHHhCCCceEEEecC
Confidence 8999999999999999988887764
No 280
>PRK08219 short chain dehydrogenase; Provisional
Probab=85.83 E-value=1.2 Score=39.10 Aligned_cols=32 Identities=25% Similarity=0.182 Sum_probs=28.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|++|||+| ||..|..+|+.|+++ ++|+.+.+.
T Consensus 4 ~~vlVtG~------------------~g~iG~~l~~~l~~~-~~V~~~~r~ 35 (227)
T PRK08219 4 PTALITGA------------------SRGIGAAIARELAPT-HTLLLGGRP 35 (227)
T ss_pred CEEEEecC------------------CcHHHHHHHHHHHhh-CCEEEEeCC
Confidence 78999988 678899999999999 999999875
No 281
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=85.69 E-value=1.5 Score=38.04 Aligned_cols=34 Identities=18% Similarity=0.224 Sum_probs=30.5
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEe
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~ 92 (313)
++.| ++|||-+| |+.|...|+.|+..|++|++|.
T Consensus 10 ~l~~--~~vlVvGG-------------------G~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHN--KVVVIIGG-------------------GKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCC--CEEEEECC-------------------CHHHHHHHHHHHhCCCEEEEEc
Confidence 3556 99999999 7889999999999999999995
No 282
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=85.49 E-value=1.5 Score=40.60 Aligned_cols=33 Identities=30% Similarity=0.495 Sum_probs=29.3
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
..||||+| +||. |.++|+.|...|-.||.--|.
T Consensus 6 nTiLITGG-----------------~sGI-Gl~lak~f~elgN~VIi~gR~ 38 (245)
T COG3967 6 NTILITGG-----------------ASGI-GLALAKRFLELGNTVIICGRN 38 (245)
T ss_pred cEEEEeCC-----------------cchh-hHHHHHHHHHhCCEEEEecCc
Confidence 78999999 7887 999999999999999866554
No 283
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=85.24 E-value=1.6 Score=39.38 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=30.6
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
+.| |+|||-+| |.+|...|+.|+..|++|++|..
T Consensus 8 l~~--k~vLVIGg-------------------G~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 8 LSN--KRVVIVGG-------------------GKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred cCC--CEEEEECC-------------------CHHHHHHHHHHHHCCCeEEEEcC
Confidence 556 99999998 88999999999999999999974
No 284
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=84.55 E-value=1.8 Score=40.00 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.5
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEe
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLY 92 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~ 92 (313)
.||-.|..|+++|+.+|++|+++.
T Consensus 5 a~GfiG~~l~~~L~~~g~~v~~~~ 28 (306)
T PLN02725 5 HRGLVGSAIVRKLEALGFTNLVLR 28 (306)
T ss_pred CCCcccHHHHHHHHhCCCcEEEee
Confidence 489999999999999999988664
No 285
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=84.00 E-value=4 Score=36.63 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=29.0
Q ss_pred CCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEE
Q 021383 37 SSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFL 91 (313)
Q Consensus 37 ~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i 91 (313)
.++.| |+|+|++. |.+|..+|+.|.+.|++|+..
T Consensus 24 ~~l~g--k~v~I~G~-------------------G~vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 24 DSLEG--KTVAVQGL-------------------GKVGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCCC--CEEEEECC-------------------CHHHHHHHHHHHHCCCEEEEE
Confidence 45666 89999876 789999999999999999844
No 286
>PRK08309 short chain dehydrogenase; Provisional
Probab=83.61 E-value=2 Score=37.87 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=25.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++++||+| | | +|.++++.|.++||+|+++.+.
T Consensus 1 m~vlVtGG-----------------t-G-~gg~la~~L~~~G~~V~v~~R~ 32 (177)
T PRK08309 1 MHALVIGG-----------------T-G-MLKRVSLWLCEKGFHVSVIARR 32 (177)
T ss_pred CEEEEECc-----------------C-H-HHHHHHHHHHHCcCEEEEEECC
Confidence 36788887 4 6 4566999999999999988764
No 287
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=82.41 E-value=1.6 Score=34.84 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=29.8
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.| ++|||.+| |..|..=++.|++.||+|++++..
T Consensus 5 l~~--~~vlVvGg-------------------G~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 5 LKG--KRVLVVGG-------------------GPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp -TT---EEEEEEE-------------------SHHHHHHHHHHCCCTBEEEEEESS
T ss_pred cCC--CEEEEECC-------------------CHHHHHHHHHHHhCCCEEEEECCc
Confidence 455 99999988 788999999999999999999976
No 288
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.37 E-value=2.4 Score=42.08 Aligned_cols=32 Identities=28% Similarity=0.376 Sum_probs=28.3
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+|+||+| |+.|.++|+.|+++||+|+++...
T Consensus 6 k~v~iiG~-------------------g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 6 KKVLVVGA-------------------GVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CEEEEECC-------------------CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 89999977 557999999999999999998764
No 289
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=82.34 E-value=2.1 Score=33.18 Aligned_cols=42 Identities=17% Similarity=0.161 Sum_probs=24.5
Q ss_pred HHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHH--HHHHHHHCCCEEEEEec
Q 021383 32 FIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAA--STEHLIKMGYAVIFLYR 93 (313)
Q Consensus 32 ~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~--lAe~~~~~Ga~V~~i~g 93 (313)
+...+..+. +.|+|||+++ |||- |.+ ||-+| ..|++.+=|+-
T Consensus 29 yvk~~~~~~-GpK~VLViGa-----------------StGy-GLAsRIa~aF-g~gA~TiGV~f 72 (78)
T PF12242_consen 29 YVKSQGKIN-GPKKVLVIGA-----------------STGY-GLASRIAAAF-GAGADTIGVSF 72 (78)
T ss_dssp HHHHC---T-S-SEEEEES------------------SSHH-HHHHHHHHHH-CC--EEEEEE-
T ss_pred HHHhcCCCC-CCceEEEEec-----------------CCcc-cHHHHHHHHh-cCCCCEEEEee
Confidence 333334443 4699999999 8886 776 66666 78888877764
No 290
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.08 E-value=9.2 Score=36.81 Aligned_cols=61 Identities=16% Similarity=0.094 Sum_probs=44.0
Q ss_pred hhhccCC--CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEE
Q 021383 11 SFFDSAP--PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAV 88 (313)
Q Consensus 11 ~ff~~~~--~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V 88 (313)
++|.+.. .|..|..|...++.+ ..++.| |+|+|-+ -||.||..+|..|+++||.|
T Consensus 129 ~l~~~~~~~~PcTp~ai~~ll~~~---~i~~~G--k~V~viG------------------rs~~mG~PmA~~L~~~g~tV 185 (296)
T PRK14188 129 RLATGETALVPCTPLGCMMLLRRV---HGDLSG--LNAVVIG------------------RSNLVGKPMAQLLLAANATV 185 (296)
T ss_pred HHhCCCCCCcCCCHHHHHHHHHHh---CCCCCC--CEEEEEc------------------CCcchHHHHHHHHHhCCCEE
Confidence 3444433 466788887655543 235666 8888843 48999999999999999999
Q ss_pred EEEecC
Q 021383 89 IFLYRR 94 (313)
Q Consensus 89 ~~i~g~ 94 (313)
+..|..
T Consensus 186 tv~~~r 191 (296)
T PRK14188 186 TIAHSR 191 (296)
T ss_pred EEECCC
Confidence 999743
No 291
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=82.04 E-value=1.9 Score=40.50 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=29.2
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
++|+|++||+.-.+. ....+|++|.++||+|+++.++.
T Consensus 1 ~~i~~~~g~~~g~~~--------------~~~~La~~L~~~g~eV~vv~~~~ 38 (348)
T TIGR01133 1 KKVVLAAGGTGGHIF--------------PALAVAEELIKRGVEVLWLGTKR 38 (348)
T ss_pred CeEEEEeCccHHHHh--------------HHHHHHHHHHhCCCEEEEEeCCC
Confidence 468888887754443 13489999999999999998754
No 292
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=82.02 E-value=9.9 Score=46.56 Aligned_cols=38 Identities=18% Similarity=0.071 Sum_probs=29.1
Q ss_pred ccCCCCeeeeccCCccHHHHHHHHHHHHC-CCEEEEEecC
Q 021383 56 PLEQRCVRYIDNFSSGHRGAASTEHLIKM-GYAVIFLYRR 94 (313)
Q Consensus 56 pID~~~VR~ItN~SSG~~G~~lAe~~~~~-Ga~V~~i~g~ 94 (313)
+|+.+.|=.||=-+.| .|.++|++|+++ |+.|+++.+.
T Consensus 1993 ~l~~g~vvLVTGGarG-IG~aiA~~LA~~~ga~viL~gRs 2031 (2582)
T TIGR02813 1993 ALNSDDVFLVTGGAKG-VTFECALELAKQCQAHFILAGRS 2031 (2582)
T ss_pred ccCCCCEEEEeCCCCH-HHHHHHHHHHHhcCCEEEEEeCC
Confidence 4665566667765655 599999999998 6999888764
No 293
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.76 E-value=9.1 Score=36.68 Aligned_cols=61 Identities=20% Similarity=0.183 Sum_probs=44.9
Q ss_pred hhhccCC--CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEE
Q 021383 11 SFFDSAP--PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAV 88 (313)
Q Consensus 11 ~ff~~~~--~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V 88 (313)
+.|.+.. .|..|..|...++.+ ..++.| |+|+|.+. |+..|.-+|..|..+|+.|
T Consensus 129 ~l~~~~~~~~PcTp~ai~~ll~~~---~i~l~G--k~vvVIGr------------------s~~VG~pla~lL~~~gatV 185 (286)
T PRK14175 129 KLYIDEQTFVPCTPLGIMEILKHA---DIDLEG--KNAVVIGR------------------SHIVGQPVSKLLLQKNASV 185 (286)
T ss_pred hHhcCCCCCCCCcHHHHHHHHHHc---CCCCCC--CEEEEECC------------------CchhHHHHHHHHHHCCCeE
Confidence 3344433 366677777655533 235666 99999886 5668999999999999999
Q ss_pred EEEecC
Q 021383 89 IFLYRR 94 (313)
Q Consensus 89 ~~i~g~ 94 (313)
+.+|+.
T Consensus 186 tv~~s~ 191 (286)
T PRK14175 186 TILHSR 191 (286)
T ss_pred EEEeCC
Confidence 999974
No 294
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=81.50 E-value=5.5 Score=35.02 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHH-HHHHHHHHHHCCCEEEEEecC
Q 021383 19 LNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHR-GAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 19 ~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~-G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|.-+..+++.+++.. .++.| |+|||.+. |.| |..+|+.|..+|+.|+++++.
T Consensus 25 p~~~~a~v~l~~~~~---~~l~g--k~vlViG~-------------------G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 25 PCTPAGILELLKRYG---IDLAG--KKVVVVGR-------------------SNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CChHHHHHHHHHHcC---CCCCC--CEEEEECC-------------------cHHHHHHHHHHHhhCCCEEEEEECC
Confidence 334455554444333 24666 99999876 666 888999999999999888864
No 295
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=81.04 E-value=3.4 Score=30.99 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=25.5
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecCCCCC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRRGTCE 98 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~~s~~ 98 (313)
.|-.|..+|.++..+|.+|++|++...+.
T Consensus 7 gG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 7 GGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp SSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred cCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 47889999999999999999999876544
No 296
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.75 E-value=8.5 Score=36.87 Aligned_cols=62 Identities=21% Similarity=0.279 Sum_probs=45.0
Q ss_pred HhhhccCC--CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCE
Q 021383 10 ESFFDSAP--PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYA 87 (313)
Q Consensus 10 ~~ff~~~~--~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~ 87 (313)
-++|.+.. .|..|..+.+-++.+ +-++.| |+|+|-+ -||.||.-+|..|+++||.
T Consensus 128 g~l~~~~~~~~PcTp~avi~lL~~~---~i~l~G--k~v~vIG------------------~S~ivG~Pla~lL~~~gat 184 (284)
T PRK14179 128 GHLWSGRPVMIPCTPAGIMEMFREY---NVELEG--KHAVVIG------------------RSNIVGKPMAQLLLDKNAT 184 (284)
T ss_pred HHHhCCCCCCcCCCHHHHHHHHHHh---CCCCCC--CEEEEEC------------------CCCcCcHHHHHHHHHCCCE
Confidence 34455543 367788877655533 235666 8888844 4899999999999999999
Q ss_pred EEEEecC
Q 021383 88 VIFLYRR 94 (313)
Q Consensus 88 V~~i~g~ 94 (313)
|++.|..
T Consensus 185 Vtv~~s~ 191 (284)
T PRK14179 185 VTLTHSR 191 (284)
T ss_pred EEEECCC
Confidence 9998653
No 297
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=80.63 E-value=4.7 Score=39.00 Aligned_cols=29 Identities=31% Similarity=0.484 Sum_probs=26.2
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecCCCC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRRGTC 97 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~ 97 (313)
=||+=|+-||+.++.+||+|.=+.++.+.
T Consensus 10 ITGQDGsYLa~lLLekGY~VhGi~Rrss~ 38 (345)
T COG1089 10 ITGQDGSYLAELLLEKGYEVHGIKRRSSS 38 (345)
T ss_pred ccCCchHHHHHHHHhcCcEEEEEeecccc
Confidence 38999999999999999999999998664
No 298
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=79.80 E-value=2.1 Score=37.79 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=21.7
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+|.||..||-.|+..|++|+++-..
T Consensus 7 aG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 7 AGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp -SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred CCHHHHHHHHHHHhCCCcEEEEECC
Confidence 6999999999999999999999863
No 299
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=79.18 E-value=6.8 Score=36.10 Aligned_cols=35 Identities=40% Similarity=0.417 Sum_probs=31.5
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
|.++||+| |||. |.++|..+.+.||.|.......+
T Consensus 15 k~~~vtGg-----------------~sGI-GrAia~~la~~Garv~v~dl~~~ 49 (256)
T KOG1200|consen 15 KVAAVTGG-----------------SSGI-GRAIAQLLAKKGARVAVADLDSA 49 (256)
T ss_pred ceeEEecC-----------------CchH-HHHHHHHHHhcCcEEEEeecchh
Confidence 88899999 8997 99999999999999999887654
No 300
>PRK12320 hypothetical protein; Provisional
Probab=78.94 E-value=3 Score=44.70 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=29.6
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++||||+| +|..|..+++.++.+|++|+.+.+.
T Consensus 1 MkILVTGA------------------aGFIGs~La~~Ll~~G~~Vi~ldr~ 33 (699)
T PRK12320 1 MQILVTDA------------------TGAVGRSVTRQLIAAGHTVSGIAQH 33 (699)
T ss_pred CEEEEECC------------------CCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 36899987 8999999999999999999998864
No 301
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=78.55 E-value=3.2 Score=37.40 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=25.3
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
||..|..++++++++|+.|..+.+...
T Consensus 9 tG~~G~~~~~~L~~~~~~v~~~~r~~~ 35 (275)
T COG0702 9 TGFVGGAVVRELLARGHEVRAAVRNPE 35 (275)
T ss_pred ccchHHHHHHHHHhCCCEEEEEEeCHH
Confidence 999999999999999999999998754
No 302
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=78.45 E-value=8.9 Score=38.20 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=22.5
Q ss_pred CccHHHHHHHHHHHH-CCCEEEEEecCCC
Q 021383 69 SSGHRGAASTEHLIK-MGYAVIFLYRRGT 96 (313)
Q Consensus 69 SSG~~G~~lAe~~~~-~Ga~V~~i~g~~s 96 (313)
.||-+|+.|..+++. +-++|+.+.|-.+
T Consensus 8 ATGFLG~yLl~eLL~~~~~kv~cLVRA~s 36 (382)
T COG3320 8 ATGFLGAYLLLELLDRSDAKVICLVRAQS 36 (382)
T ss_pred CchHhHHHHHHHHHhcCCCcEEEEEecCC
Confidence 399999888888775 5579999988765
No 303
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=76.95 E-value=35 Score=32.12 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=29.8
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.|.| |+.||++=+ |..| .++.||+.+.+.||+..|-+-..
T Consensus 3 ~L~G--K~~lI~Gva--------------n~rS--IAwGIAk~l~~~GAeL~fTy~~e 42 (259)
T COG0623 3 LLEG--KRILIMGVA--------------NNRS--IAWGIAKALAEQGAELAFTYQGE 42 (259)
T ss_pred ccCC--ceEEEEEec--------------cccc--HHHHHHHHHHHcCCEEEEEeccH
Confidence 3556 999998632 2222 37999999999999998888553
No 304
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=76.84 E-value=3.2 Score=39.84 Aligned_cols=28 Identities=39% Similarity=0.393 Sum_probs=25.7
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
+||-.|.+|...+.+.|+.|+.+.|...
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~ 33 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPP 33 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCc
Confidence 4999999999999999999999998743
No 305
>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.52 E-value=17 Score=32.98 Aligned_cols=35 Identities=43% Similarity=0.496 Sum_probs=30.6
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
.+.|||+| .||. |.+-||.+.+.|+.|.++-=|.|
T Consensus 10 lvalvtgg-----------------asgl-g~ataerlakqgasv~lldlp~s 44 (260)
T KOG1199|consen 10 LVALVTGG-----------------ASGL-GKATAERLAKQGASVALLDLPQS 44 (260)
T ss_pred eeEEeecC-----------------cccc-cHHHHHHHHhcCceEEEEeCCcc
Confidence 78899999 7885 99999999999999999986554
No 306
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=76.45 E-value=8.7 Score=38.07 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=29.7
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCC--CEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMG--YAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~G--a~V~~i~g~ 94 (313)
..||||+| +|..|..++++|+++| .+|..+.-.
T Consensus 5 ~~vlVtGG------------------~GflG~hlv~~L~~~~~~~~irv~D~~ 39 (361)
T KOG1430|consen 5 LSVLVTGG------------------SGFLGQHLVQALLENELKLEIRVVDKT 39 (361)
T ss_pred CEEEEECC------------------ccHHHHHHHHHHHhcccccEEEEeccC
Confidence 78999999 7999999999999999 888888754
No 307
>PRK06849 hypothetical protein; Provisional
Probab=75.17 E-value=5.1 Score=39.18 Aligned_cols=34 Identities=12% Similarity=0.137 Sum_probs=29.1
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+++||||+|++. -|..+|+.|.+.|+.|+++...
T Consensus 4 ~~~VLI~G~~~~------------------~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 4 KKTVLITGARAP------------------AALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCEEEEeCCCcH------------------HHHHHHHHHHHCCCEEEEEeCC
Confidence 489999998543 3899999999999999999765
No 308
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=74.84 E-value=4.5 Score=31.10 Aligned_cols=26 Identities=31% Similarity=0.480 Sum_probs=23.0
Q ss_pred CccHHHHHHHHHHHHCC---CEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMG---YAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~G---a~V~~i~g~ 94 (313)
-+|.||.+|++.++..| ++|++++.+
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r 34 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSR 34 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEES
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccC
Confidence 47999999999999999 999988543
No 309
>PLN02970 serine racemase
Probab=74.74 E-value=22 Score=34.29 Aligned_cols=103 Identities=13% Similarity=0.052 Sum_probs=54.9
Q ss_pred cCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCccCCCCCcccchhhhccCCccEEeeCccHHHHHHHHHHHHHhhhccc
Q 021383 67 NFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGL 146 (313)
Q Consensus 67 N~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~m~~a~~~~~~~~~~~~ 146 (313)
-.|||-+|.++|-++..+|+.++++..+.. |. ...+.++.-+...+.+... .....+.++++.+ ..+.
T Consensus 80 ~aSsGN~g~alA~~a~~~G~~~~ivvp~~~--~~-------~k~~~~~~~GA~Vi~~~~~-~~~~~~~a~~la~--~~g~ 147 (328)
T PLN02970 80 THSSGNHAAALALAAKLRGIPAYIVVPKNA--PA-------CKVDAVIRYGGIITWCEPT-VESREAVAARVQQ--ETGA 147 (328)
T ss_pred EECCcHHHHHHHHHHHHcCCCEEEEECCCC--CH-------HHHHHHHhcCCEEEEeCCC-HHHHHHHHHHHHH--hcCC
Confidence 359999999999999999999999997643 21 1122233334344444332 2233333333322 2456
Q ss_pred ccccccccHHHHHHHHHHHH-HHhhhcCCcceeeeee
Q 021383 147 LLKLPFTTIFEYLQMLQMIA-VSSRSLGPCSMFYLAA 182 (313)
Q Consensus 147 l~~~~f~t~~dy~~~l~~i~-~~l~~~~~~d~~i~aA 182 (313)
.+..+|....- ......+. +.+++.+..|.+|.+.
T Consensus 148 ~~~~~~~n~~~-~~g~~t~g~Ei~~ql~~~D~vv~~v 183 (328)
T PLN02970 148 VLIHPYNDGRV-ISGQGTIALEFLEQVPELDVIIVPI 183 (328)
T ss_pred EEeCCCCCcch-hhehHHHHHHHHHhccCCCEEEEee
Confidence 67778865321 11122121 1223344457666643
No 310
>PRK07334 threonine dehydratase; Provisional
Probab=74.04 E-value=34 Score=33.99 Aligned_cols=101 Identities=16% Similarity=0.124 Sum_probs=53.8
Q ss_pred CCccHHHHHHHHHHHHCCCEEEEEecCCCCCCccCCCCCcccchhhhccCCccEEeeCccHHHHHHHHHHHHHhhhcccc
Q 021383 68 FSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLL 147 (313)
Q Consensus 68 ~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~m~~a~~~~~~~~~~~~l 147 (313)
.|||-+|.++|-++...|+.++++..... |. .-.+.++.-+...+.+.......+ +.+.++. ...+..
T Consensus 77 aSsGN~g~alA~~a~~~G~~~~iv~p~~~--~~-------~k~~~~~~~GA~v~~~~~~~~~~~-~~a~~l~--~~~~~~ 144 (403)
T PRK07334 77 MSAGNHAQGVAYHAQRLGIPATIVMPRFT--PT-------VKVERTRGFGAEVVLHGETLDEAR-AHARELA--EEEGLT 144 (403)
T ss_pred ECCcHHHHHHHHHHHHcCCCEEEEECCCC--CH-------HHHHHHHHcCCEEEEECcCHHHHH-HHHHHHH--HhcCCE
Confidence 58999999999999999999999986543 21 112223333333333322222222 2333332 234666
Q ss_pred cccccccHHHHHHHHHHHH-HHhhhcCCcceeeee
Q 021383 148 LKLPFTTIFEYLQMLQMIA-VSSRSLGPCSMFYLA 181 (313)
Q Consensus 148 ~~~~f~t~~dy~~~l~~i~-~~l~~~~~~d~~i~a 181 (313)
+..+|....-... ...+. +.+++.+..|.+|.+
T Consensus 145 ~~~~~~~~~~~~g-~~t~~~Ei~~q~~~~d~vv~~ 178 (403)
T PRK07334 145 FVHPYDDPAVIAG-QGTVALEMLEDAPDLDTLVVP 178 (403)
T ss_pred ecCCCCCHHHHHh-HHHHHHHHHhcCCCCCEEEEe
Confidence 7777865432222 22222 222344556777764
No 311
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=73.84 E-value=6.8 Score=35.38 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=30.6
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.| |+|||-+| |..|..-|+.|+..|+.|++++..
T Consensus 7 l~g--k~vlVvGg-------------------G~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 7 LEG--RAVLVVGG-------------------GDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred cCC--CeEEEECc-------------------CHHHHHHHHHHHHCCCEEEEEcCC
Confidence 555 89999988 788999999999999999999854
No 312
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.79 E-value=4.3 Score=38.44 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=28.5
Q ss_pred CeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 61 CVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 61 ~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+++-|.---.|.||..||..|+..|+.|+++-..
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 37 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETT 37 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECC
Confidence 4555555667999999999999999999999864
No 313
>PRK07201 short chain dehydrogenase; Provisional
Probab=72.66 E-value=5.1 Score=41.61 Aligned_cols=33 Identities=30% Similarity=0.354 Sum_probs=29.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHH--HCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLI--KMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~--~~Ga~V~~i~g~ 94 (313)
++||||+| ||..|..++++|+ ..|+.|+.+.++
T Consensus 1 m~ILVTGa------------------tGfIG~~lv~~Ll~~~~g~~V~~l~R~ 35 (657)
T PRK07201 1 MRYFVTGG------------------TGFIGRRLVSRLLDRRREATVHVLVRR 35 (657)
T ss_pred CeEEEeCC------------------ccHHHHHHHHHHHhcCCCCEEEEEECc
Confidence 36888887 8999999999999 599999999985
No 314
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.02 E-value=6.3 Score=39.10 Aligned_cols=31 Identities=23% Similarity=0.157 Sum_probs=27.2
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
|+|+||++ |+.|.+.|+.|+++|+.|++.-.
T Consensus 6 k~v~v~G~-------------------g~~G~s~a~~l~~~G~~V~~~d~ 36 (447)
T PRK02472 6 KKVLVLGL-------------------AKSGYAAAKLLHKLGANVTVNDG 36 (447)
T ss_pred CEEEEEee-------------------CHHHHHHHHHHHHCCCEEEEEcC
Confidence 89999997 45899999999999999988754
No 315
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.93 E-value=29 Score=33.29 Aligned_cols=61 Identities=11% Similarity=0.108 Sum_probs=44.3
Q ss_pred hhhccCC--CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEE
Q 021383 11 SFFDSAP--PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAV 88 (313)
Q Consensus 11 ~ff~~~~--~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V 88 (313)
+.|.+.. .|..|..|.+.++.+ +-++.| |+|+|-++ |..-|.-+|..|+.+||.|
T Consensus 128 ~l~~g~~~~~PcTp~avi~lL~~~---~i~l~G--k~vvVvGr------------------s~~VG~Pla~lL~~~gAtV 184 (285)
T PRK14191 128 KLCSQLDGFVPATPMGVMRLLKHY---HIEIKG--KDVVIIGA------------------SNIVGKPLAMLMLNAGASV 184 (285)
T ss_pred HHhcCCCCCCCCcHHHHHHHHHHh---CCCCCC--CEEEEECC------------------CchhHHHHHHHHHHCCCEE
Confidence 3444433 366788887665543 235667 99999887 4456999999999999999
Q ss_pred EEEecC
Q 021383 89 IFLYRR 94 (313)
Q Consensus 89 ~~i~g~ 94 (313)
+..|..
T Consensus 185 tv~hs~ 190 (285)
T PRK14191 185 SVCHIL 190 (285)
T ss_pred EEEeCC
Confidence 999863
No 316
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=71.22 E-value=4.7 Score=39.42 Aligned_cols=33 Identities=30% Similarity=0.497 Sum_probs=28.9
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
.++||||+| .|--|...+-+++++||.|+.|-.
T Consensus 2 ~~~VLVtGg------------------aGyiGsht~l~L~~~gy~v~~vDN 34 (343)
T KOG1371|consen 2 GKHVLVTGG------------------AGYIGSHTVLALLKRGYGVVIVDN 34 (343)
T ss_pred CcEEEEecC------------------CcceehHHHHHHHhCCCcEEEEec
Confidence 389999999 478899999999999999998864
No 317
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.92 E-value=51 Score=31.51 Aligned_cols=61 Identities=20% Similarity=0.211 Sum_probs=44.4
Q ss_pred hhhccCC--CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEE
Q 021383 11 SFFDSAP--PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAV 88 (313)
Q Consensus 11 ~ff~~~~--~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V 88 (313)
+.|.+.. .|..|..|.+.++.+ +-++.| ++|+|... |...|..+|..+..+|+.|
T Consensus 123 ~l~~~~~~~~PcTp~av~~ll~~~---~i~l~G--k~V~ViGr------------------s~~vGrpla~lL~~~~atV 179 (279)
T PRK14178 123 RLVSGLPGFAPCTPNGIMTLLHEY---KISIAG--KRAVVVGR------------------SIDVGRPMAALLLNADATV 179 (279)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHc---CCCCCC--CEEEEECC------------------CccccHHHHHHHHhCCCee
Confidence 3455443 366788888665543 235666 99998765 4566999999999999999
Q ss_pred EEEecC
Q 021383 89 IFLYRR 94 (313)
Q Consensus 89 ~~i~g~ 94 (313)
+..|..
T Consensus 180 tv~hs~ 185 (279)
T PRK14178 180 TICHSK 185 (279)
T ss_pred EEEecC
Confidence 999964
No 318
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=70.59 E-value=47 Score=33.60 Aligned_cols=57 Identities=21% Similarity=0.181 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHhcc-CCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 17 PPLNDRAAISQKLKEFIALN-SSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 17 ~~~~~~~~I~~~v~~~l~~~-~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+-...+-.|...+.+.+.+. .+|++ ++|||-+ -|.||...|.+++.+|...++|...
T Consensus 153 ~I~~~~VSi~saAv~lA~~~~~~L~~--~~vlvIG-------------------AGem~~lva~~L~~~g~~~i~IaNR 210 (414)
T COG0373 153 GIGKGAVSISSAAVELAKRIFGSLKD--KKVLVIG-------------------AGEMGELVAKHLAEKGVKKITIANR 210 (414)
T ss_pred CCCCCccchHHHHHHHHHHHhccccc--CeEEEEc-------------------ccHHHHHHHHHHHhCCCCEEEEEcC
Confidence 33444555666666666542 33665 7777654 3799999999999999777777764
No 319
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.23 E-value=12 Score=34.05 Aligned_cols=38 Identities=34% Similarity=0.402 Sum_probs=30.8
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
+|.| ++|++|+-| .| .|.++...+.+.||.|+-+++..
T Consensus 4 ~laG--~~vlvTgag-----------------aG-IG~~~v~~La~aGA~ViAvaR~~ 41 (245)
T KOG1207|consen 4 SLAG--VIVLVTGAG-----------------AG-IGKEIVLSLAKAGAQVIAVARNE 41 (245)
T ss_pred cccc--eEEEeeccc-----------------cc-ccHHHHHHHHhcCCEEEEEecCH
Confidence 4566 999999742 23 38999999999999999999874
No 320
>PRK06815 hypothetical protein; Provisional
Probab=69.61 E-value=34 Score=32.71 Aligned_cols=31 Identities=23% Similarity=0.170 Sum_probs=27.3
Q ss_pred eeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 64 YIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 64 ~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.|+ .|||-+|.++|-++...|..++++..+.
T Consensus 71 vv~-aSsGN~g~alA~~a~~~G~~~~i~~p~~ 101 (317)
T PRK06815 71 VIT-ASSGNHGQGVALAAKLAGIPVTVYAPEQ 101 (317)
T ss_pred EEE-ECCChHHHHHHHHHHHhCCCEEEEECCC
Confidence 455 5999999999999999999999999654
No 321
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=69.45 E-value=6.5 Score=33.75 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.2
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEec
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
.|.||..+|+.|++.|++|+...+
T Consensus 9 lG~mG~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 9 LGNMGSAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp -SHHHHHHHHHHHHTTTEEEEEES
T ss_pred hHHHHHHHHHHHHhcCCeEEeecc
Confidence 599999999999999999987664
No 322
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.26 E-value=63 Score=31.01 Aligned_cols=61 Identities=20% Similarity=0.189 Sum_probs=44.0
Q ss_pred hhhccCC--CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEE
Q 021383 11 SFFDSAP--PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAV 88 (313)
Q Consensus 11 ~ff~~~~--~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V 88 (313)
+.|.+.. .|..|..+.+.++.+ +-++.| |+|+|-+. |+.-|.-+|..|+++||.|
T Consensus 129 ~l~~~~~~~~PcTp~av~~lL~~~---~i~l~G--k~vvViGr------------------S~iVG~Pla~lL~~~~atV 185 (284)
T PRK14190 129 RMMLGQDTFLPCTPHGILELLKEY---NIDISG--KHVVVVGR------------------SNIVGKPVGQLLLNENATV 185 (284)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHHc---CCCCCC--CEEEEECC------------------CCccHHHHHHHHHHCCCEE
Confidence 3455543 366788887655543 235666 88888765 5667999999999999999
Q ss_pred EEEecC
Q 021383 89 IFLYRR 94 (313)
Q Consensus 89 ~~i~g~ 94 (313)
|..|..
T Consensus 186 t~chs~ 191 (284)
T PRK14190 186 TYCHSK 191 (284)
T ss_pred EEEeCC
Confidence 998853
No 323
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=68.80 E-value=70 Score=30.23 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=30.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
...+||+|+ |||=+|.++|-++..+|+.++++....
T Consensus 56 ~~~vv~~g~----------------ssGN~g~alA~~a~~~G~~~~ivvp~~ 91 (311)
T TIGR01275 56 ADTVITVGA----------------IQSNHARATALAAKKLGLDAVLVLREK 91 (311)
T ss_pred CCEEEEcCC----------------chhHHHHHHHHHHHHhCCceEEEecCC
Confidence 456778874 589999999999999999999999763
No 324
>PRK06382 threonine dehydratase; Provisional
Probab=68.71 E-value=47 Score=33.00 Aligned_cols=101 Identities=11% Similarity=0.012 Sum_probs=54.5
Q ss_pred cCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCccCCCCCcccchhhhccCCccEEeeCccHHHHHHHHHHHHHhhhccc
Q 021383 67 NFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGL 146 (313)
Q Consensus 67 N~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~m~~a~~~~~~~~~~~~ 146 (313)
-.|||-.|.++|-++...|..++++..... |. .-.+.++.-+...+.+...+.. ......++. ...+.
T Consensus 78 ~aSsGN~g~a~A~aa~~~G~~~~ivmp~~~--~~-------~k~~~~~~~GA~Vv~~~~~~~~-a~~~a~~la--~~~~~ 145 (406)
T PRK06382 78 TASAGNHAQGVAYAASINGIDAKIVMPEYT--IP-------QKVNAVEAYGAHVILTGRDYDE-AHRYADKIA--MDENR 145 (406)
T ss_pred EECCCHHHHHHHHHHHHcCCCEEEEEcCCC--HH-------HHHHHHHHcCCEEEEECCCHHH-HHHHHHHHH--HhcCC
Confidence 369999999999999999999999996543 21 1122233333333333332222 222223222 23467
Q ss_pred ccccccccHHHHHHHHHHH-HHHhhhcCCcceeee
Q 021383 147 LLKLPFTTIFEYLQMLQMI-AVSSRSLGPCSMFYL 180 (313)
Q Consensus 147 l~~~~f~t~~dy~~~l~~i-~~~l~~~~~~d~~i~ 180 (313)
.+..+|....--. ....+ .+.+++.+..|.+|.
T Consensus 146 ~~v~~~~~~~~i~-g~~t~~~Ei~eq~~~~d~vvv 179 (406)
T PRK06382 146 TFIEAFNDRWVIS-GQGTIGLEIMEDLPDLDQIIV 179 (406)
T ss_pred EecCccCChHHHH-HHHHHHHHHHHhcCCCCEEEE
Confidence 7888887543221 11111 122344556676666
No 325
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=68.08 E-value=18 Score=35.73 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=45.5
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCCCCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEP 99 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P 99 (313)
.+++||+|-| +|..=.|.|+-+-.++-.+|+++..+|++|.|+++....-|
T Consensus 19 ~~~~v~tgi~-----psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~ 69 (353)
T cd00674 19 EKYVVASGIS-----PSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDR 69 (353)
T ss_pred CeEEEecCCC-----CCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCc
Confidence 5799999986 35788999999999999999999999999999999877644
No 326
>PRK07476 eutB threonine dehydratase; Provisional
Probab=68.03 E-value=24 Score=33.77 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=24.8
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
|||-.|.++|-++...|+.++++....
T Consensus 74 SsGN~g~alA~~a~~~G~~~~i~vp~~ 100 (322)
T PRK07476 74 STGNHGRALAYAARALGIRATICMSRL 100 (322)
T ss_pred CCChHHHHHHHHHHHhCCCEEEEeCCC
Confidence 999999999999999999999998653
No 327
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=68.01 E-value=52 Score=31.54 Aligned_cols=29 Identities=17% Similarity=0.113 Sum_probs=25.8
Q ss_pred cCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 67 NFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 67 N~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
-.|||-.|.++|-++..+|+.++++....
T Consensus 72 ~aSsGN~g~alA~~a~~~G~~~~v~~p~~ 100 (317)
T TIGR02991 72 AASTGNHGRALAYAAAEEGVRATICMSEL 100 (317)
T ss_pred EECCCHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 44899999999999999999999998654
No 328
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=68.01 E-value=29 Score=33.32 Aligned_cols=62 Identities=19% Similarity=0.170 Sum_probs=43.9
Q ss_pred hhhccCC--CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEE
Q 021383 11 SFFDSAP--PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAV 88 (313)
Q Consensus 11 ~ff~~~~--~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V 88 (313)
+.|.+.. .|..|..|.+.++.+ +-++.| |+|+|-+. |..-|.-+|..|.++||.|
T Consensus 128 ~l~~~~~~~~PcTp~avi~lL~~~---~i~l~G--k~vvVvGr------------------S~iVGkPla~lL~~~~atV 184 (284)
T PRK14170 128 NLFIGKDSFVPCTPAGIIELIKST---GTQIEG--KRAVVIGR------------------SNIVGKPVAQLLLNENATV 184 (284)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHh---CCCCCC--CEEEEECC------------------CCcchHHHHHHHHHCCCEE
Confidence 3444432 466787777655432 235666 88888765 5566999999999999999
Q ss_pred EEEecCC
Q 021383 89 IFLYRRG 95 (313)
Q Consensus 89 ~~i~g~~ 95 (313)
|..|..+
T Consensus 185 tichs~T 191 (284)
T PRK14170 185 TIAHSRT 191 (284)
T ss_pred EEeCCCC
Confidence 9999753
No 329
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=67.47 E-value=54 Score=32.05 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=25.1
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
|||-+|.++|-++...|..++.+.....
T Consensus 55 SsGN~g~alA~~a~~~G~~~~iv~p~~~ 82 (380)
T TIGR01127 55 SAGNHAQGVAYAAKKFGIKAVIVMPESA 82 (380)
T ss_pred CCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 8899999999999999999999886543
No 330
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=67.46 E-value=5.8 Score=33.92 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=24.6
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
-+|-+|.++|..+..+|++|++..++.
T Consensus 6 GaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 6 GAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp SSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 479999999999999999999999863
No 331
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=67.40 E-value=6.7 Score=38.07 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=27.9
Q ss_pred CeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 61 CVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 61 ~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
++|-|.=--+|.||..+|..|+..|++|+++-.
T Consensus 6 ~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~ 38 (321)
T PRK07066 6 DIKTFAAIGSGVIGSGWVARALAHGLDVVAWDP 38 (321)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeC
Confidence 455555557899999999999999999998875
No 332
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=66.74 E-value=29 Score=28.87 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=19.9
Q ss_pred ccHHHHHHHHHHHHCCCE-EEEEec
Q 021383 70 SGHRGAASTEHLIKMGYA-VIFLYR 93 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~-V~~i~g 93 (313)
+|.+|.+++.++...|+. |+++.|
T Consensus 20 aGg~ar~v~~~L~~~g~~~i~i~nR 44 (135)
T PF01488_consen 20 AGGAARAVAAALAALGAKEITIVNR 44 (135)
T ss_dssp SSHHHHHHHHHHHHTTSSEEEEEES
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 378899999999999999 655554
No 333
>PRK08638 threonine dehydratase; Validated
Probab=66.47 E-value=37 Score=32.92 Aligned_cols=32 Identities=13% Similarity=0.136 Sum_probs=27.4
Q ss_pred eeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 64 YIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 64 ~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.|--.|||-+|.++|-++..+|..++++....
T Consensus 77 ~vv~~SsGN~g~alA~~aa~~G~~~~iv~p~~ 108 (333)
T PRK08638 77 GVVACSAGNHAQGVALSCALLGIDGKVVMPKG 108 (333)
T ss_pred eEEEeCCcHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 34446999999999999999999999988654
No 334
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=66.46 E-value=14 Score=34.07 Aligned_cols=54 Identities=22% Similarity=0.188 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 22 RAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 22 ~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
.|+|.....-|+.+..--++-=..|+=|||...+||| .|++....||.||.+..
T Consensus 86 lErieg~~~~~l~~~~i~~~DVliviSnSGrNpvpie------------------~A~~~rekGa~vI~vTS 139 (243)
T COG4821 86 LERIEGYAKLFLHRLQIRPNDVLIVISNSGRNPVPIE------------------VAEYAREKGAKVIAVTS 139 (243)
T ss_pred hHhhhhHHHHHHHHhcCCCCCEEEEEeCCCCCCcchH------------------HHHHHHhcCCeEEEEeh
Confidence 4777788888887642111211345668999999998 79999999999999985
No 335
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=66.04 E-value=77 Score=29.65 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=25.5
Q ss_pred CCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 68 ~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.|||-.|.++|-++.+.|..++++....
T Consensus 59 ~SsGN~g~alA~~a~~~G~~~~i~vp~~ 86 (291)
T cd01561 59 PTSGNTGIGLAMVAAAKGYRFIIVMPET 86 (291)
T ss_pred eCCChHHHHHHHHHHHcCCeEEEEECCC
Confidence 3999999999999999999999999764
No 336
>PRK08198 threonine dehydratase; Provisional
Probab=65.96 E-value=60 Score=32.08 Aligned_cols=101 Identities=13% Similarity=0.069 Sum_probs=54.8
Q ss_pred CCccHHHHHHHHHHHHCCCEEEEEecCCCCCCccCCCCCcccchhhhccCCccEEeeCccHHHHHHHHHHHHHhhhcccc
Q 021383 68 FSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLL 147 (313)
Q Consensus 68 ~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~m~~a~~~~~~~~~~~~l 147 (313)
.|||-.|.++|-++...|..++++..... |.. -.+.++.-+...+.+...+.+.+..+. ++. ...+..
T Consensus 76 aSsGN~g~alA~~a~~~G~~~~iv~p~~~--~~~-------k~~~~~~~GA~Vi~~~~~~~~~~~~a~-~~~--~~~g~~ 143 (404)
T PRK08198 76 ASAGNHAQGVAYAASLLGIKATIVMPETA--PLS-------KVKATRSYGAEVVLHGDVYDEALAKAQ-ELA--EETGAT 143 (404)
T ss_pred ECCCHHHHHHHHHHHHcCCCEEEEECCCC--CHH-------HHHHHHhCCCEEEEECCCHHHHHHHHH-HHH--HhcCCE
Confidence 58999999999999999999999996543 211 122222233333434333333333332 222 234667
Q ss_pred cccccccHHHHHHHHHHHHHHhhhcCCcceeee
Q 021383 148 LKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYL 180 (313)
Q Consensus 148 ~~~~f~t~~dy~~~l~~i~~~l~~~~~~d~~i~ 180 (313)
+..+|....-....-....+.+++.++.|.+|.
T Consensus 144 ~~~~~~~~~~~~g~~t~a~EI~~q~~~~d~vv~ 176 (404)
T PRK08198 144 FVHPFDDPDVIAGQGTIGLEILEDLPDVDTVVV 176 (404)
T ss_pred ecCCCCCccHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 778887543322211111122344555676666
No 337
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=65.81 E-value=46 Score=31.16 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=25.3
Q ss_pred CCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 68 ~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.|||-+|.++|-++...|..++++....
T Consensus 71 ~ssGN~g~alA~~a~~~G~~~~ivvp~~ 98 (304)
T cd01562 71 ASAGNHAQGVAYAAKLLGIPATIVMPET 98 (304)
T ss_pred ECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4889999999999999999999999654
No 338
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=65.60 E-value=9.2 Score=35.86 Aligned_cols=38 Identities=26% Similarity=0.276 Sum_probs=28.7
Q ss_pred eEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 45 VACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 45 ~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
+|+|++|||--.+- ....+|+++.++||+|++++++..
T Consensus 1 ~~~~~~~~~gG~~~--------------~~~~la~~l~~~G~ev~v~~~~~~ 38 (350)
T cd03785 1 RILIAGGGTGGHIF--------------PALALAEELRERGAEVLFLGTKRG 38 (350)
T ss_pred CEEEEecCchhhhh--------------HHHHHHHHHHhCCCEEEEEECCCc
Confidence 47888887643332 356899999999999999987653
No 339
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=65.59 E-value=33 Score=32.65 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=25.8
Q ss_pred CCccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 68 FSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 68 ~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
.|||-.|.++|-++...|+.++++..+..
T Consensus 76 ~SsGN~g~alA~~a~~~G~~~~ivvp~~~ 104 (324)
T cd01563 76 ASTGNTSASLAAYAARAGIKCVVFLPAGK 104 (324)
T ss_pred eCCCHHHHHHHHHHHHcCCceEEEEeCCC
Confidence 38899999999999999999999997654
No 340
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=64.64 E-value=7.7 Score=35.65 Aligned_cols=167 Identities=19% Similarity=0.121 Sum_probs=87.1
Q ss_pred CCccHHHHHHHHHHHHCCCEEEEEecCCCCCCccCCCCCcccchhhhccCCccEEeeCccHHHHHHHHHHHHHhhhcccc
Q 021383 68 FSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLL 147 (313)
Q Consensus 68 ~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~m~~a~~~~~~~~~~~~l 147 (313)
.-+|.+|.++|..|.+.||+|++-.+...- . +. ...+.+. ..+... ....|++.- -==+
T Consensus 7 ~GtGniG~alA~~~a~ag~eV~igs~r~~~---~--~~--a~a~~l~----~~i~~~-----~~~dA~~~a-----DVVv 65 (211)
T COG2085 7 IGTGNIGSALALRLAKAGHEVIIGSSRGPK---A--LA--AAAAALG----PLITGG-----SNEDAAALA-----DVVV 65 (211)
T ss_pred eccChHHHHHHHHHHhCCCeEEEecCCChh---H--HH--HHHHhhc----cccccC-----ChHHHHhcC-----CEEE
Confidence 358999999999999999999999665321 0 00 0000000 001111 111222210 1126
Q ss_pred cccccccHHHHHHHHHHHHHHhhhcCCcceeeeeeccCCCcCCccccccccccCCC--CCceEEEEeCcchhHHhhccc-
Q 021383 148 LKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLAAAVSDFYVPWKSMAEHKIQSGS--GPLDMQLLQVPKMLSVLRKEW- 224 (313)
Q Consensus 148 ~~~~f~t~~dy~~~l~~i~~~l~~~~~~d~~i~aAAVsDf~v~~~~~~~~KI~s~~--~~l~l~L~~~PKiL~~i~~~~- 224 (313)
|.+||..+.+-+..+... ++ |-++--+.+.+.+. ..........++. -.+.=.+.|.+|+.+-+....
T Consensus 66 LAVP~~a~~~v~~~l~~~------~~--~KIvID~tnp~~~~-~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a 136 (211)
T COG2085 66 LAVPFEAIPDVLAELRDA------LG--GKIVIDATNPIEVN-GEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPA 136 (211)
T ss_pred EeccHHHHHhHHHHHHHH------hC--CeEEEecCCCcccc-CCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCH
Confidence 778898888876666532 22 44555555552110 0011112222221 123445667777766554321
Q ss_pred -------CCCeEEEEEecccCchHHHHHHHHHHHHcCCcEEEEecCCC
Q 021383 225 -------APMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLS 265 (313)
Q Consensus 225 -------~p~~~lVgFKlEt~~e~li~~A~~kL~~~~~D~VVaN~l~~ 265 (313)
.+. .-+.--+-+|+++-.+.+-+..++-|++.|-+=.|+.
T Consensus 137 ~~l~~~~~~~-~~~~v~vagDD~~Ak~~v~~L~~~iG~~~ld~G~L~~ 183 (211)
T COG2085 137 AVLADLAKPG-GRRDVLVAGDDAEAKAVVAELAEDIGFRPLDAGPLEN 183 (211)
T ss_pred HHhccCCCcC-CceeEEEecCcHHHHHHHHHHHHhcCcceeecccccc
Confidence 121 2222333456666778888888888999988777764
No 341
>PRK07048 serine/threonine dehydratase; Validated
Probab=64.23 E-value=41 Score=32.11 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=26.0
Q ss_pred cCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 67 NFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 67 N~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
-.|||-+|.++|-++...|+.++++....
T Consensus 77 ~aSsGN~g~alA~~a~~~G~~~~vvvp~~ 105 (321)
T PRK07048 77 TFSSGNHAQAIALSARLLGIPATIVMPQD 105 (321)
T ss_pred EeCCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35899999999999999999999999754
No 342
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=64.18 E-value=8.7 Score=34.63 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.8
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+|.||.++|..+.+.|++|+++.+.
T Consensus 9 ~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 9 TGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 7999999999999999999988654
No 343
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=64.15 E-value=43 Score=32.14 Aligned_cols=54 Identities=20% Similarity=0.156 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 18 ~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.|..|..|.+.++.+ +-++.| |+|+|.+. |..-|.-+|..|..+||.||..|..
T Consensus 139 ~PcTp~av~~ll~~~---~i~l~G--k~vvViGr------------------s~iVG~Pla~lL~~~~atVtv~hs~ 192 (285)
T PRK10792 139 RPCTPRGIMTLLERY---GIDTYG--LNAVVVGA------------------SNIVGRPMSLELLLAGCTVTVCHRF 192 (285)
T ss_pred CCCCHHHHHHHHHHc---CCCCCC--CEEEEECC------------------CcccHHHHHHHHHHCCCeEEEEECC
Confidence 366788887666543 235666 99999765 4556999999999999999999975
No 344
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=63.96 E-value=1.2e+02 Score=27.71 Aligned_cols=59 Identities=17% Similarity=0.053 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHhc------cCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEE
Q 021383 18 PLNDRAAISQKLKEFIAL------NSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFL 91 (313)
Q Consensus 18 ~~~~~~~I~~~v~~~l~~------~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i 91 (313)
.|..|..+.+.++.+=-. +.++.| |+|+|-+. |..-|.-||..|+++||.|+..
T Consensus 33 ~PCTp~avi~lL~~~~i~~~~~~~~~~l~G--K~vvVIGr------------------S~iVGkPla~lL~~~~AtVti~ 92 (197)
T cd01079 33 LPCTPLAIVKILEFLGIYNKILPYGNRLYG--KTITIINR------------------SEVVGRPLAALLANDGARVYSV 92 (197)
T ss_pred cCCCHHHHHHHHHHhCCcccccccCCCCCC--CEEEEECC------------------CccchHHHHHHHHHCCCEEEEE
Confidence 367788888777644110 125666 88888765 4556999999999999999999
Q ss_pred ecCCC
Q 021383 92 YRRGT 96 (313)
Q Consensus 92 ~g~~s 96 (313)
|..+.
T Consensus 93 ~~~~~ 97 (197)
T cd01079 93 DINGI 97 (197)
T ss_pred ecCcc
Confidence 86544
No 345
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=63.94 E-value=46 Score=31.91 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=26.6
Q ss_pred eccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 65 IDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 65 ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
|--.|||-+|.++|-++..+|+.++++....
T Consensus 54 vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~ 84 (316)
T cd06448 54 VVCSSGGNAGLAAAYAARKLGVPCTIVVPES 84 (316)
T ss_pred EEEeCCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3334789999999999999999999999764
No 346
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.30 E-value=42 Score=32.15 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=43.5
Q ss_pred hhhccCC--CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEE
Q 021383 11 SFFDSAP--PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAV 88 (313)
Q Consensus 11 ~ff~~~~--~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V 88 (313)
++|.+.. .|..|..+.+.++.+ +-++.| |+|+|-++ |..-|.-+|..|.++||.|
T Consensus 128 ~l~~g~~~~~PcTp~avi~lL~~~---~i~l~G--k~vvViGr------------------S~~VG~Pla~lL~~~~AtV 184 (281)
T PRK14183 128 RLVTGLDGFVPCTPLGVMELLEEY---EIDVKG--KDVCVVGA------------------SNIVGKPMAALLLNANATV 184 (281)
T ss_pred HHhcCCCCCCCCcHHHHHHHHHHc---CCCCCC--CEEEEECC------------------CCcchHHHHHHHHHCCCEE
Confidence 4455443 356677777555433 235777 99998876 4455999999999999999
Q ss_pred EEEecC
Q 021383 89 IFLYRR 94 (313)
Q Consensus 89 ~~i~g~ 94 (313)
|+.|..
T Consensus 185 ti~hs~ 190 (281)
T PRK14183 185 DICHIF 190 (281)
T ss_pred EEeCCC
Confidence 988864
No 347
>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]
Probab=63.30 E-value=9.1 Score=36.51 Aligned_cols=28 Identities=32% Similarity=0.525 Sum_probs=24.9
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
=||+-|.-|||.++.+||+|.=|-+.+|
T Consensus 36 ItGQDGSYLaEfLL~KgYeVHGiiRRsS 63 (376)
T KOG1372|consen 36 ITGQDGSYLAEFLLSKGYEVHGIIRRSS 63 (376)
T ss_pred ccCCCchHHHHHHHhCCceeeEEEeecc
Confidence 4789999999999999999998887765
No 348
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=62.49 E-value=22 Score=35.78 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=41.3
Q ss_pred ceEEEecCCcccccC---CCCeeeeccC---------------CccHHHHHHHHHHHHCCCEEEEEecCCCCCC
Q 021383 44 RVACVTSGGTTVPLE---QRCVRYIDNF---------------SSGHRGAASTEHLIKMGYAVIFLYRRGTCEP 99 (313)
Q Consensus 44 k~VLITsGgT~epID---~~~VR~ItN~---------------SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P 99 (313)
++++|-.|.+.-++. .+.++++++. -.|-.|..+|..|.+.|.+|++|.+...+.|
T Consensus 138 d~lVIATGs~p~~ipg~~~~~~~~~~~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~ 211 (466)
T PRK06115 138 KDIVIATGSEPTPLPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP 211 (466)
T ss_pred CEEEEeCCCCCCCCCCCCCCCCeEECHHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 378888887654432 1256777652 3788999999999999999999987655444
No 349
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=62.43 E-value=71 Score=32.04 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=29.4
Q ss_pred eeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 63 RYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 63 R~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
|.|.-.|+|..|.++|-++...|..++++.+..
T Consensus 112 ~vI~etgsGnhG~A~A~aaa~~Gl~~~I~m~~~ 144 (402)
T PRK13028 112 RLIAETGAGQHGVATATAAALFGLECEIYMGEV 144 (402)
T ss_pred eEEEecCcHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 567667899999999999999999999999864
No 350
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=61.77 E-value=40 Score=28.74 Aligned_cols=53 Identities=21% Similarity=0.107 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 19 LNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 19 ~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|..++.+.+.++.+ +.++.| |+|+|-+. |+.-|..+|..+.++|+.|+..|..
T Consensus 9 p~t~~a~~~ll~~~---~~~~~g--k~v~VvGr------------------s~~vG~pla~lL~~~gatV~~~~~~ 61 (140)
T cd05212 9 SPVAKAVKELLNKE---GVRLDG--KKVLVVGR------------------SGIVGAPLQCLLQRDGATVYSCDWK 61 (140)
T ss_pred ccHHHHHHHHHHHc---CCCCCC--CEEEEECC------------------CchHHHHHHHHHHHCCCEEEEeCCC
Confidence 44555565544432 235666 88888543 5667999999999999999999964
No 351
>PRK08246 threonine dehydratase; Provisional
Probab=61.69 E-value=68 Score=30.62 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=28.5
Q ss_pred eeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 62 VRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 62 VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.+-|--.|||-.|.++|-++...|..++++..+.
T Consensus 68 ~~~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~ 101 (310)
T PRK08246 68 AAGVVAASGGNAGLAVAYAAAALGVPATVFVPET 101 (310)
T ss_pred CCeEEEeCCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3445555999999999999999999999999654
No 352
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.95 E-value=51 Score=31.71 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 18 ~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.|..|..|.+.++.+ +-++.| |+|+|.+. |..-|.-+|..|..+||.||..|..
T Consensus 144 ~PcTp~av~~ll~~~---~i~l~G--k~vvViGr------------------s~iVGkPla~lL~~~~atVtv~hs~ 197 (287)
T PRK14176 144 VPCTPHGVIRALEEY---GVDIEG--KNAVIVGH------------------SNVVGKPMAAMLLNRNATVSVCHVF 197 (287)
T ss_pred CCCcHHHHHHHHHHc---CCCCCC--CEEEEECC------------------CcccHHHHHHHHHHCCCEEEEEecc
Confidence 466788887666543 235666 99999765 4556999999999999999999964
No 353
>PRK06444 prephenate dehydrogenase; Provisional
Probab=60.86 E-value=8.2 Score=34.87 Aligned_cols=21 Identities=24% Similarity=0.253 Sum_probs=19.7
Q ss_pred CccHHHHHHHHHHHHCCCEEE
Q 021383 69 SSGHRGAASTEHLIKMGYAVI 89 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~ 89 (313)
.+|+||..+|+.|.+.|+.|+
T Consensus 8 ~~G~mG~~~~~~~~~~g~~v~ 28 (197)
T PRK06444 8 KNGRLGRVLCSILDDNGLGVY 28 (197)
T ss_pred cCCcHHHHHHHHHHhCCCEEE
Confidence 489999999999999999997
No 354
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=60.69 E-value=90 Score=29.40 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=25.4
Q ss_pred CCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 68 ~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.|||-.|.++|-++...|..++++....
T Consensus 64 aSsGN~g~alA~~a~~~G~~~~i~vp~~ 91 (299)
T TIGR01136 64 ATSGNTGIALAMVAAAKGYKLILTMPET 91 (299)
T ss_pred eCCChHHHHHHHHHHHcCCcEEEEECCC
Confidence 4899999999999999999999998654
No 355
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=60.41 E-value=9.8 Score=36.15 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=23.1
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.|.||..+|..++++|++|+++.+.
T Consensus 10 ~G~mG~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 10 AGLIGRAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred ccHHHHHHHHHHHHCCCeeEEEeCC
Confidence 7999999999999999999998764
No 356
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=59.87 E-value=25 Score=31.22 Aligned_cols=72 Identities=15% Similarity=0.056 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCc-c----cccC-CCCeeeeccCCccHHHH----HHHHHHHHCCCEE
Q 021383 19 LNDRAAISQKLKEFIALNSSESGTRRVACVTSGGT-T----VPLE-QRCVRYIDNFSSGHRGA----ASTEHLIKMGYAV 88 (313)
Q Consensus 19 ~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT-~----epID-~~~VR~ItN~SSG~~G~----~lAe~~~~~Ga~V 88 (313)
+..|+.+...+.+.+. . ..|+++-+|+ . ..+. ..|-||++....|.||+ +|.-.+...+..|
T Consensus 7 ~l~~~~~~~~l~~~l~------~--d~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lpaaiGa~la~p~~~v 78 (202)
T cd02006 7 PIKPQRVYEEMNKAFG------R--DVRYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLGWTVPAALGVAAADPDRQV 78 (202)
T ss_pred CcCHHHHHHHHHhhCC------C--CeEEEECCcHHHHHHHHhcCcCCCCeEEccCCccchhhhhHHHHhHHhhCCCCeE
Confidence 3567777777766553 1 3455555444 3 1232 12678898777899994 5555555556789
Q ss_pred EEEecCCCCC
Q 021383 89 IFLYRRGTCE 98 (313)
Q Consensus 89 ~~i~g~~s~~ 98 (313)
+.|.|.+++.
T Consensus 79 v~i~GDG~f~ 88 (202)
T cd02006 79 VALSGDYDFQ 88 (202)
T ss_pred EEEEeChHhh
Confidence 9999998863
No 357
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.64 E-value=58 Score=31.47 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=43.9
Q ss_pred hhhccCC--CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEE
Q 021383 11 SFFDSAP--PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAV 88 (313)
Q Consensus 11 ~ff~~~~--~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V 88 (313)
++|.+.. .|..|..|.+.++.+ +-++.| |+|+|-+. |..-|.-+|..|.++||.|
T Consensus 129 ~l~~~~~~~~PcTp~aii~lL~~~---~i~l~G--k~vvVIGr------------------S~iVGkPla~lL~~~~atV 185 (297)
T PRK14186 129 RLVKGEPGLRSCTPAGVMRLLRSQ---QIDIAG--KKAVVVGR------------------SILVGKPLALMLLAANATV 185 (297)
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHh---CCCCCC--CEEEEECC------------------CccchHHHHHHHHHCCCEE
Confidence 3444433 466677777655433 235666 88888765 5566999999999999999
Q ss_pred EEEecCC
Q 021383 89 IFLYRRG 95 (313)
Q Consensus 89 ~~i~g~~ 95 (313)
|..|..+
T Consensus 186 tv~hs~T 192 (297)
T PRK14186 186 TIAHSRT 192 (297)
T ss_pred EEeCCCC
Confidence 9999753
No 358
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=59.53 E-value=9 Score=35.04 Aligned_cols=27 Identities=22% Similarity=0.388 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
-|+.|..+|+.|...|++|++|-....
T Consensus 8 ~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 8 AGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 389999999999999999999997643
No 359
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=59.28 E-value=79 Score=25.75 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=21.9
Q ss_pred cccccccccccHHHHHHHHHHHHHHhhhcCCcceeeee
Q 021383 144 GGLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYLA 181 (313)
Q Consensus 144 ~~~l~~~~f~t~~dy~~~l~~i~~~l~~~~~~d~~i~a 181 (313)
+-.++.+++.. ..|...++.++..|+..+..++.+++
T Consensus 50 ~~d~V~iS~~~-~~~~~~~~~~~~~L~~~~~~~i~i~~ 86 (122)
T cd02071 50 DVDVIGLSSLS-GGHMTLFPEVIELLRELGAGDILVVG 86 (122)
T ss_pred CCCEEEEcccc-hhhHHHHHHHHHHHHhcCCCCCEEEE
Confidence 44566666654 46667777777777655443444433
No 360
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=58.91 E-value=19 Score=37.31 Aligned_cols=52 Identities=25% Similarity=0.255 Sum_probs=46.3
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCc
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPY 100 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~ 100 (313)
..++||+|=| +|..-.|.|+-.=.++..+|+++..+|.+|.||++....-|+
T Consensus 18 ~~~~~~tg~~-----psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~l 69 (515)
T TIGR00467 18 NLYTVASGIT-----PSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPL 69 (515)
T ss_pred CeEEEecCCC-----CCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCccc
Confidence 5799999966 668999999999999999999999999999999998877444
No 361
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=58.89 E-value=18 Score=35.17 Aligned_cols=33 Identities=27% Similarity=0.331 Sum_probs=29.6
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++|+||+|| |--|+.|++-|...|++||.+--.
T Consensus 28 lrI~itGga------------------GFIgSHLvdkLm~egh~VIa~Dn~ 60 (350)
T KOG1429|consen 28 LRILITGGA------------------GFIGSHLVDKLMTEGHEVIALDNY 60 (350)
T ss_pred cEEEEecCc------------------chHHHHHHHHHHhcCCeEEEEecc
Confidence 999999994 788999999999999999988643
No 362
>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=58.69 E-value=15 Score=33.01 Aligned_cols=18 Identities=33% Similarity=0.300 Sum_probs=15.8
Q ss_pred HHHHHHHCCCEEEEEecC
Q 021383 77 STEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 77 lAe~~~~~Ga~V~~i~g~ 94 (313)
+|+.|+++|++|+++.+.
T Consensus 1 ~a~~l~~~G~~Vv~~~r~ 18 (241)
T PRK12428 1 TARLLRFLGARVIGVDRR 18 (241)
T ss_pred ChHHHHhCCCEEEEEeCC
Confidence 588999999999999875
No 363
>PRK08526 threonine dehydratase; Provisional
Probab=58.33 E-value=1.1e+02 Score=30.69 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=55.2
Q ss_pred eccCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCccCCCCCcccchhhhccCCccEEeeCccHHHHHHHHHHHHHhhhc
Q 021383 65 IDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAG 144 (313)
Q Consensus 65 ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~m~~a~~~~~~~~~~ 144 (313)
|+ .|+|-.|.++|-++...|..++++..... |.. -.+.++.-+...+.+...+.+.+..+. ++. ...
T Consensus 72 V~-aSaGNhg~avA~aa~~~Gi~~~IvmP~~~--p~~-------k~~~~r~~GA~Vv~~g~~~~~a~~~a~-~~a--~~~ 138 (403)
T PRK08526 72 IA-ASAGNHAQGVAISAKKFGIKAVIVMPEAT--PLL-------KVSGTKALGAEVILKGDNYDEAYAFAL-EYA--KEN 138 (403)
T ss_pred EE-ECccHHHHHHHHHHHHcCCCEEEEEcCCC--CHH-------HHHHHHhCCCEEEEECCCHHHHHHHHH-HHH--Hhc
Confidence 44 69999999999999999999999996543 311 112222223333333333333333333 332 235
Q ss_pred ccccccccccHHHHHHHHHHHHHHhhhcCCcceeee
Q 021383 145 GLLLKLPFTTIFEYLQMLQMIAVSSRSLGPCSMFYL 180 (313)
Q Consensus 145 ~~l~~~~f~t~~dy~~~l~~i~~~l~~~~~~d~~i~ 180 (313)
+..+..+|....-....--.-.+.+++.++.|.+|.
T Consensus 139 g~~~v~p~~~~~~i~G~gtia~EI~eq~~~~D~vvv 174 (403)
T PRK08526 139 NLTFIHPFEDEEVMAGQGTIALEMLDEISDLDMVVV 174 (403)
T ss_pred CCEeeCCCCCHHHHhhhHHHHHHHHHhcCCCCEEEE
Confidence 677888886543211111111122334455676665
No 364
>PLN02996 fatty acyl-CoA reductase
Probab=57.98 E-value=14 Score=37.68 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=28.2
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCE---EEEEecCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYA---VIFLYRRG 95 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~---V~~i~g~~ 95 (313)
|.||||+| ||-.|..|++.+++.+.+ |+++.|+.
T Consensus 12 k~VlvTGa------------------TGFlG~~ll~~LL~~~~~v~~I~~LvR~~ 48 (491)
T PLN02996 12 KTILVTGA------------------TGFLAKIFVEKILRVQPNVKKLYLLLRAS 48 (491)
T ss_pred CeEEEeCC------------------CcHHHHHHHHHHHhhCCCCCEEEEEEeCC
Confidence 89999986 999999999999987654 56666653
No 365
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=57.81 E-value=33 Score=35.43 Aligned_cols=52 Identities=15% Similarity=0.169 Sum_probs=45.6
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCc
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPY 100 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~ 100 (313)
..++|++|-| +|..=.|.|+-+=.++..+++++..+|.+|.||++....-|+
T Consensus 23 ~~~~~~~g~~-----psG~~HiG~~~e~~~~d~v~r~lr~~G~~v~~i~~~Dd~d~l 74 (510)
T PRK00750 23 PPVVVETGIG-----PSGLPHIGNFREVARTDMVRRALRDLGIKTRLIFFSDDMDGL 74 (510)
T ss_pred CcEEEEeCCC-----CCCCcccccccchhhHHHHHHHHHHcCCcEEEEEEEecCCcc
Confidence 3599999985 568999999999999999999999999999999998766543
No 366
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=57.77 E-value=13 Score=35.33 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=23.9
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
-+|.||.++|..+...|++|+++.+..
T Consensus 11 G~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 11 GAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 469999999999999999999887753
No 367
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.73 E-value=66 Score=30.90 Aligned_cols=61 Identities=18% Similarity=0.119 Sum_probs=44.3
Q ss_pred hhhccCC--CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEE
Q 021383 11 SFFDSAP--PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAV 88 (313)
Q Consensus 11 ~ff~~~~--~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V 88 (313)
+.|.+.. .|..|..|...++.+ +-++.| |+|+|-+. |+.-|.-+|..|..+||.|
T Consensus 130 ~l~~g~~~~~PcTp~avi~ll~~y---~i~l~G--k~vvViGr------------------S~iVGkPla~lL~~~~atV 186 (284)
T PRK14177 130 KLSMGVETYLPCTPYGMVLLLKEY---GIDVTG--KNAVVVGR------------------SPILGKPMAMLLTEMNATV 186 (284)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHh---CCCCCC--CEEEEECC------------------CCcchHHHHHHHHHCCCEE
Confidence 4455443 366787777655543 235766 88888765 5566999999999999999
Q ss_pred EEEecC
Q 021383 89 IFLYRR 94 (313)
Q Consensus 89 ~~i~g~ 94 (313)
|..|..
T Consensus 187 t~chs~ 192 (284)
T PRK14177 187 TLCHSK 192 (284)
T ss_pred EEeCCC
Confidence 999965
No 368
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=57.56 E-value=14 Score=37.31 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=41.7
Q ss_pred HHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 28 KLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 28 ~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.|.+|+....--.|.+|-|+|-|=.-.-|+. -++ -+.++.+|||||..+|.+|.|+.-.
T Consensus 203 EVrEFIE~~Lg~egl~rsViVvATSD~s~l~--R~~------aa~~At~IAEyFRDqG~~VLL~mDS 261 (441)
T COG1157 203 EVREFIEKDLGEEGLKRSVVVVATSDESALM--RLK------AAFTATTIAEYFRDQGKRVLLIMDS 261 (441)
T ss_pred hHHHHHHHhcchhhccceEEEEECCCCCHHH--HHH------HHHHHHHHHHHHHhCCCeEEEEeec
Confidence 3456665321112245788888877777777 333 4778999999999999999999853
No 369
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=57.55 E-value=24 Score=31.27 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCc-cc------ccCCCCeeeeccCCccHHHHHHHH----HHHHCCC
Q 021383 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGT-TV------PLEQRCVRYIDNFSSGHRGAASTE----HLIKMGY 86 (313)
Q Consensus 18 ~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT-~e------pID~~~VR~ItN~SSG~~G~~lAe----~~~~~Ga 86 (313)
.+..|..+...+.+.+. . ..++++-+|+ .. +++. |-||++..+-|.||+.+.- .+...+.
T Consensus 2 ~~l~~~~~~~~l~~~l~------~--~~ivv~d~G~~~~~~~~~~~~~~-~~~~~~~~~~g~mG~~lpaaiGa~la~p~r 72 (196)
T cd02013 2 NPMHPRQVLRELEKAMP------E--DAIVSTDIGNICSVANSYLRFEK-PRSFIAPLSFGNCGYALPAIIGAKAAAPDR 72 (196)
T ss_pred CCCCHHHHHHHHHHHCC------C--CEEEEECCcHHHHHHHHhcCcCC-CCeEEcCCCCcccccHHHHHHHHHHhCCCC
Confidence 34567777777766553 1 3466664444 22 4553 7899987777888855544 4444567
Q ss_pred EEEEEecCCCC
Q 021383 87 AVIFLYRRGTC 97 (313)
Q Consensus 87 ~V~~i~g~~s~ 97 (313)
.|+.+.|.+++
T Consensus 73 ~vv~i~GDG~f 83 (196)
T cd02013 73 PVVAIAGDGAW 83 (196)
T ss_pred cEEEEEcchHH
Confidence 79999998875
No 370
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=57.50 E-value=22 Score=33.78 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=29.9
Q ss_pred CCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 38 SESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 38 ~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.+.| ++|+|.+. |.+|.++|+.|...|++|+++.+.
T Consensus 148 ~l~g--k~v~IiG~-------------------G~iG~avA~~L~~~G~~V~v~~R~ 183 (287)
T TIGR02853 148 TIHG--SNVMVLGF-------------------GRTGMTIARTFSALGARVFVGARS 183 (287)
T ss_pred CCCC--CEEEEEcC-------------------hHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4555 88888765 899999999999999999887764
No 371
>PRK10717 cysteine synthase A; Provisional
Probab=57.26 E-value=1.1e+02 Score=29.23 Aligned_cols=28 Identities=14% Similarity=0.228 Sum_probs=25.5
Q ss_pred CCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 68 ~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.|||-+|.++|-++...|..++++....
T Consensus 70 aSsGN~g~alA~~a~~~G~~~~vv~p~~ 97 (330)
T PRK10717 70 GTAGNTGIGLALVAAARGYKTVIVMPET 97 (330)
T ss_pred eCCcHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 4999999999999999999999999654
No 372
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=57.11 E-value=7.8 Score=36.45 Aligned_cols=36 Identities=11% Similarity=0.190 Sum_probs=30.9
Q ss_pred CeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 61 CVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 61 ~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
+++-++=.-.|.||+-||+-++..|+.|+++-....
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 566666778899999999999999999999987643
No 373
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=56.84 E-value=25 Score=30.72 Aligned_cols=53 Identities=11% Similarity=-0.026 Sum_probs=36.5
Q ss_pred ceEEEecCCcc-------cccCCCCeeeeccCCccHHHHHHHHH----HHHCCCEEEEEecCCCC
Q 021383 44 RVACVTSGGTT-------VPLEQRCVRYIDNFSSGHRGAASTEH----LIKMGYAVIFLYRRGTC 97 (313)
Q Consensus 44 k~VLITsGgT~-------epID~~~VR~ItN~SSG~~G~~lAe~----~~~~Ga~V~~i~g~~s~ 97 (313)
..++++-.|+. -++++ |-||+.+.+.|.||+.+.-+ +...+..|+.|.|.+++
T Consensus 15 ~~ii~~d~G~~~~~~~~~~~~~~-~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~i~GDG~f 78 (177)
T cd02010 15 DDIVLLDVGAHKIWMARYYRTYA-PNTCLISNGLATMGVALPGAIGAKLVYPDRKVVAVSGDGGF 78 (177)
T ss_pred CcEEEecCcHHHHHHHHhCCcCC-CCCEEeCCCChhhhhHHHHHHHHHHhCCCCcEEEEEcchHH
Confidence 45666665552 23343 67999999999999666554 34456789999998775
No 374
>PRK06608 threonine dehydratase; Provisional
Probab=56.84 E-value=1e+02 Score=29.96 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=25.5
Q ss_pred cCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 67 NFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 67 N~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
-.|||-.|.++|-++...|+.++++....
T Consensus 77 ~~SsGN~g~alA~~a~~~G~~~~vv~p~~ 105 (338)
T PRK06608 77 AYSTGNHGQAVAYASKLFGIKTRIYLPLN 105 (338)
T ss_pred EECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34999999999999999999999998543
No 375
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=56.53 E-value=1e+02 Score=28.99 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=25.0
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
|||-.|.++|-++...|..++++....
T Consensus 64 SsGN~g~alA~~a~~~Gl~~~i~vp~~ 90 (298)
T TIGR01139 64 TSGNTGIALAMVAAARGYKLILTMPET 90 (298)
T ss_pred CCChhHHHHHHHHHHcCCeEEEEeCCc
Confidence 899999999999999999999998654
No 376
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=56.40 E-value=9.5 Score=37.46 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=30.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.+|+|++|||.-.|= |+++|+++.++|++|.|+-..+
T Consensus 6 ~ki~i~aGgtsGhi~---------------paal~~~l~~~~~~~~~~g~gg 42 (385)
T TIGR00215 6 PTIALVAGEASGDIL---------------GAGLRQQLKEHYPNARFIGVAG 42 (385)
T ss_pred CeEEEEeCCccHHHH---------------HHHHHHHHHhcCCCcEEEEEcc
Confidence 578999999866665 7799999999999998887554
No 377
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=56.22 E-value=13 Score=35.46 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=23.7
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
-.|.||.++|..+++.|++|+++.+.
T Consensus 11 G~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 11 GAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 36999999999999999999999874
No 378
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.16 E-value=70 Score=30.74 Aligned_cols=63 Identities=14% Similarity=0.169 Sum_probs=45.0
Q ss_pred HhhhccCC--CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCE
Q 021383 10 ESFFDSAP--PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYA 87 (313)
Q Consensus 10 ~~ff~~~~--~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~ 87 (313)
-++|.+.. .|..|..+.+.++.+ +-++.| |+|+|-+. |+.-|.-+|..|.++||.
T Consensus 125 g~l~~~~~~~~PcTp~avi~lL~~~---~i~l~G--k~vvViGr------------------S~iVGkPla~lL~~~~aT 181 (287)
T PRK14173 125 GRLWMGGEALEPCTPAGVVRLLKHY---GIPLAG--KEVVVVGR------------------SNIVGKPLAALLLREDAT 181 (287)
T ss_pred HHHhcCCCCCCCCCHHHHHHHHHHc---CCCCCC--CEEEEECC------------------CCccHHHHHHHHHHCCCE
Confidence 34555443 366788877655532 235666 88888654 566799999999999999
Q ss_pred EEEEecCC
Q 021383 88 VIFLYRRG 95 (313)
Q Consensus 88 V~~i~g~~ 95 (313)
||..|..+
T Consensus 182 Vtichs~T 189 (287)
T PRK14173 182 VTLAHSKT 189 (287)
T ss_pred EEEeCCCC
Confidence 99999753
No 379
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=56.10 E-value=1.6e+02 Score=26.62 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=25.3
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
|||-+|.++|.++...|..++++..+..
T Consensus 57 ssGN~g~alA~~a~~~g~~~~v~~p~~~ 84 (244)
T cd00640 57 TGGNTGIALAAAAARLGLKCTIVMPEGA 84 (244)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 6799999999999999999999997654
No 380
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=55.69 E-value=22 Score=29.19 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=24.7
Q ss_pred eeeeccCCccHHHHHHHHHHHH-CCCEEEEEec
Q 021383 62 VRYIDNFSSGHRGAASTEHLIK-MGYAVIFLYR 93 (313)
Q Consensus 62 VR~ItN~SSG~~G~~lAe~~~~-~Ga~V~~i~g 93 (313)
+|..=+-.+|+||..+++.+.. .|+++.-...
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~ 33 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVD 33 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEe
Confidence 3555566799999999999998 8888555543
No 381
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.36 E-value=74 Score=30.50 Aligned_cols=62 Identities=15% Similarity=0.082 Sum_probs=45.0
Q ss_pred HhhhccC---CCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCC
Q 021383 10 ESFFDSA---PPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGY 86 (313)
Q Consensus 10 ~~ff~~~---~~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga 86 (313)
-++|.+. -.|..|..+.+.++.+ +-++.| |+|+|-+. |..-|.-+|..|.++||
T Consensus 126 g~l~~g~~~~~~PcTp~avi~lL~~y---~i~l~G--k~vvVvGr------------------S~iVGkPla~lL~~~~a 182 (282)
T PRK14166 126 GYLNLGLESGFLPCTPLGVMKLLKAY---EIDLEG--KDAVIIGA------------------SNIVGRPMATMLLNAGA 182 (282)
T ss_pred HHHhcCCCCCCcCCCHHHHHHHHHHh---CCCCCC--CEEEEECC------------------CCcchHHHHHHHHHCCC
Confidence 3455552 2477788888666543 235666 88888654 55669999999999999
Q ss_pred EEEEEecC
Q 021383 87 AVIFLYRR 94 (313)
Q Consensus 87 ~V~~i~g~ 94 (313)
.||..|..
T Consensus 183 tVt~chs~ 190 (282)
T PRK14166 183 TVSVCHIK 190 (282)
T ss_pred EEEEeCCC
Confidence 99999975
No 382
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=55.24 E-value=14 Score=30.58 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.|-+|..+|-.|.+.|++|+++.++.
T Consensus 6 ~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 6 AGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred cCHHHHHHHHHHHHCCCceEEEEccc
Confidence 58899999999999999999999864
No 383
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.04 E-value=12 Score=35.07 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=23.0
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
-.|.||..+|..++++|++|+++-..
T Consensus 8 G~G~mG~~iA~~la~~G~~V~~~d~~ 33 (288)
T PRK09260 8 GAGVMGRGIAYVFAVSGFQTTLVDIK 33 (288)
T ss_pred CccHHHHHHHHHHHhCCCcEEEEeCC
Confidence 46999999999999999999988653
No 384
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=54.89 E-value=20 Score=34.02 Aligned_cols=39 Identities=26% Similarity=0.304 Sum_probs=27.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
++|+|++||+-..+- ....+|+++.++||+|+++.++.+
T Consensus 2 ~~i~i~~~g~gG~~~--------------~~~~la~~L~~~g~ev~vv~~~~~ 40 (357)
T PRK00726 2 KKILLAGGGTGGHVF--------------PALALAEELKKRGWEVLYLGTARG 40 (357)
T ss_pred cEEEEEcCcchHhhh--------------HHHHHHHHHHhCCCEEEEEECCCc
Confidence 467777765432221 234799999999999999998664
No 385
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=54.89 E-value=27 Score=30.58 Aligned_cols=54 Identities=19% Similarity=0.155 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 19 LNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 19 ~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
|..|..+.+.++.+ .-++.| |+|+|-+. |+.-|.-+|..|.++||.|+..|..+
T Consensus 17 PcTp~aii~lL~~~---~~~l~G--k~v~VvGr------------------s~~VG~Pla~lL~~~~atVt~~h~~T 70 (160)
T PF02882_consen 17 PCTPLAIIELLEYY---GIDLEG--KKVVVVGR------------------SNIVGKPLAMLLLNKGATVTICHSKT 70 (160)
T ss_dssp -HHHHHHHHHHHHT---T-STTT---EEEEE-T------------------TTTTHHHHHHHHHHTT-EEEEE-TTS
T ss_pred CCCHHHHHHHHHhc---CCCCCC--CEEEEECC------------------cCCCChHHHHHHHhCCCeEEeccCCC
Confidence 34466666555432 235666 88888765 55669999999999999999999753
No 386
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.81 E-value=79 Score=30.29 Aligned_cols=62 Identities=11% Similarity=0.190 Sum_probs=44.7
Q ss_pred hhhccCC--CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEE
Q 021383 11 SFFDSAP--PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAV 88 (313)
Q Consensus 11 ~ff~~~~--~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V 88 (313)
+.|.+.. .|..|..|.+.++.+ +-++.| |+|+|-+. |..-|.-+|..|..+||.|
T Consensus 127 ~l~~~~~~~~PcTp~avi~lL~~~---~i~l~G--k~vvViGr------------------S~iVGkPla~lL~~~~atV 183 (282)
T PRK14169 127 RLWANEPTVVASTPYGIMALLDAY---DIDVAG--KRVVIVGR------------------SNIVGRPLAGLMVNHDATV 183 (282)
T ss_pred HHhcCCCCCCCCCHHHHHHHHHHh---CCCCCC--CEEEEECC------------------CccchHHHHHHHHHCCCEE
Confidence 3454443 467788888666543 235666 88888654 5667999999999999999
Q ss_pred EEEecCC
Q 021383 89 IFLYRRG 95 (313)
Q Consensus 89 ~~i~g~~ 95 (313)
|..|..+
T Consensus 184 tichs~T 190 (282)
T PRK14169 184 TIAHSKT 190 (282)
T ss_pred EEECCCC
Confidence 9999753
No 387
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=54.56 E-value=14 Score=34.66 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=23.0
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
-.|.||..||..|+..|++|+++...
T Consensus 11 G~G~mG~~iA~~l~~~G~~V~~~d~~ 36 (295)
T PLN02545 11 GAGQMGSGIAQLAAAAGMDVWLLDSD 36 (295)
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 46999999999999999999988653
No 388
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=54.29 E-value=19 Score=33.83 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=40.3
Q ss_pred CceEEEEeCcchhHHhhcc-cCCCeEEEEEecccCchHHHHHHHHHHHHcCCcEEEEecCCC-------------CccEE
Q 021383 205 PLDMQLLQVPKMLSVLRKE-WAPMAFCISFKLETDAEILLEKADMARKKYGMHAVVANELLS-------------RKEQV 270 (313)
Q Consensus 205 ~l~l~L~~~PKiL~~i~~~-~~p~~~lVgFKlEt~~e~li~~A~~kL~~~~~D~VVaN~l~~-------------~~~~v 270 (313)
.+.....|+|+.+....+. +.|.. +|..+== -. .+--++.++.+++|++|.=+-.. ..-.|
T Consensus 152 ~~~~RvLP~~~~l~~~~~~G~~~~~-iia~~gP--fs--~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~v 226 (256)
T TIGR00715 152 VVFVRVLPYPQALAQALKLGFPSDR-IIAMRGP--FS--EELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINV 226 (256)
T ss_pred eEEEEECCCchhhHHHHHcCCChhc-EEEEeCC--CC--HHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcE
Confidence 3666666888888765543 33333 4432211 11 11226678999999999876643 14677
Q ss_pred EEEeCCC
Q 021383 271 VVVTNNG 277 (313)
Q Consensus 271 ~li~~~~ 277 (313)
++|.+-.
T Consensus 227 ivI~RP~ 233 (256)
T TIGR00715 227 IRIARPQ 233 (256)
T ss_pred EEEeCCC
Confidence 8887754
No 389
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=54.20 E-value=31 Score=32.87 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=32.1
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.|+|.+-...-|.. |+ -+..+|.++||+|..+|.+|.++.-.
T Consensus 127 ~tvvv~~t~d~~~~~----r~----~a~~~a~aiAE~fr~~G~~Vlvl~Ds 169 (274)
T cd01132 127 YTIVVAATASDPAPL----QY----LAPYTGCAMGEYFMDNGKHALIIYDD 169 (274)
T ss_pred eeEEEEeCCCCchhH----HH----HHHHHHHHHHHHHHHCCCCEEEEEcC
Confidence 567776665544443 33 35678999999999999999999864
No 390
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=54.14 E-value=14 Score=34.68 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=23.7
Q ss_pred CCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 68 FSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 68 ~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.-.|.||..+|..++..|++|+++-..
T Consensus 9 iGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 9 AGAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred ECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 347999999999999999999998753
No 391
>PLN02503 fatty acyl-CoA reductase 2
Probab=54.05 E-value=17 Score=38.49 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=28.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCC---EEEEEecCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGY---AVIFLYRRG 95 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga---~V~~i~g~~ 95 (313)
|.||||+| ||-+|..|++.+++.+. .|+++.++.
T Consensus 120 k~VlVTGa------------------TGFLGk~LlekLLr~~~~v~kIy~LvR~k 156 (605)
T PLN02503 120 KNFLITGA------------------TGFLAKVLIEKILRTNPDVGKIYLLIKAK 156 (605)
T ss_pred CEEEEcCC------------------chHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 99999987 99999999999999876 457777753
No 392
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.81 E-value=88 Score=29.99 Aligned_cols=62 Identities=18% Similarity=0.108 Sum_probs=44.2
Q ss_pred HhhhccCC---CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCC
Q 021383 10 ESFFDSAP---PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGY 86 (313)
Q Consensus 10 ~~ff~~~~---~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga 86 (313)
-++|.+.. .|..|..|.+.++.+ +-++.| |+|+|-+. |..-|.-+|..|.++||
T Consensus 126 g~l~~g~~~~~~PcTp~avi~ll~~~---~i~l~G--k~vvViGr------------------S~iVGkPla~lL~~~~A 182 (282)
T PRK14182 126 GALSIGIAGVPRPCTPAGVMRMLDEA---RVDPKG--KRALVVGR------------------SNIVGKPMAMMLLERHA 182 (282)
T ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHh---CCCCCC--CEEEEECC------------------CCcchHHHHHHHHHCCC
Confidence 34454433 466787777655433 235666 88888765 55669999999999999
Q ss_pred EEEEEecC
Q 021383 87 AVIFLYRR 94 (313)
Q Consensus 87 ~V~~i~g~ 94 (313)
.||..|..
T Consensus 183 tVtichs~ 190 (282)
T PRK14182 183 TVTIAHSR 190 (282)
T ss_pred EEEEeCCC
Confidence 99999875
No 393
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=53.49 E-value=26 Score=33.22 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=20.0
Q ss_pred cHHHHHHHHHHHHCCCE-EEEEecC
Q 021383 71 GHRGAASTEHLIKMGYA-VIFLYRR 94 (313)
Q Consensus 71 G~~G~~lAe~~~~~Ga~-V~~i~g~ 94 (313)
|-.|.++|.+|+..|+. |+++.+.
T Consensus 135 GGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 135 GGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 56799999999999997 7777664
No 394
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=53.23 E-value=18 Score=33.98 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=26.8
Q ss_pred eeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 62 VRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 62 VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+|-|.=.-.|.||..+|..++.+|++|+++-..
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVS 35 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhcCCeEEEEeCC
Confidence 344444567999999999999999999988754
No 395
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.88 E-value=89 Score=29.96 Aligned_cols=55 Identities=20% Similarity=0.176 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 18 ~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.|..|..|.+.++.+ +-++.| |+|+|-+. |+.-|.-+|..|.++||.||..|..+
T Consensus 138 ~PcTp~aii~lL~~y---~i~l~G--k~vvViGr------------------S~~VGkPla~lL~~~~ATVt~chs~T 192 (282)
T PRK14180 138 ESCTPKGIMTMLREY---GIKTEG--AYAVVVGA------------------SNVVGKPVSQLLLNAKATVTTCHRFT 192 (282)
T ss_pred CCCCHHHHHHHHHHh---CCCCCC--CEEEEECC------------------CCcchHHHHHHHHHCCCEEEEEcCCC
Confidence 467788888766543 235666 88888765 55669999999999999999999753
No 396
>PRK07846 mycothione reductase; Reviewed
Probab=52.81 E-value=33 Score=34.46 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=39.1
Q ss_pred ceEEEecCCcccccCC---CCeeeeccC---------------CccHHHHHHHHHHHHCCCEEEEEecCCCCCC
Q 021383 44 RVACVTSGGTTVPLEQ---RCVRYIDNF---------------SSGHRGAASTEHLIKMGYAVIFLYRRGTCEP 99 (313)
Q Consensus 44 k~VLITsGgT~epID~---~~VR~ItN~---------------SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P 99 (313)
++++|..|....+.+. ..++++++. -.|-.|..+|+.|.++|.+|+++.+...+.|
T Consensus 130 d~lViATGs~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~ 203 (451)
T PRK07846 130 DQVVIAAGSRPVIPPVIADSGVRYHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR 203 (451)
T ss_pred CEEEEcCCCCCCCCCCCCcCCccEEchHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc
Confidence 5677777765432210 134555543 1789999999999999999999998655444
No 397
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=52.57 E-value=17 Score=35.82 Aligned_cols=36 Identities=33% Similarity=0.375 Sum_probs=30.3
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCE-EEEEec
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYA-VIFLYR 93 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~-V~~i~g 93 (313)
++|++|+|||--.+=+ +.++|++|.++|++ |.++-.
T Consensus 1 ~~ivl~~gGTGGHv~p--------------AlAl~~~l~~~g~~~v~~~~~ 37 (357)
T COG0707 1 KKIVLTAGGTGGHVFP--------------ALALAEELAKRGWEQVIVLGT 37 (357)
T ss_pred CeEEEEeCCCccchhH--------------HHHHHHHHHhhCccEEEEecc
Confidence 5789999999988873 89999999999994 666643
No 398
>PRK05638 threonine synthase; Validated
Probab=52.45 E-value=1.2e+02 Score=30.55 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=25.9
Q ss_pred CCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 68 ~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.|||=+|.++|-++...|..++++..+.
T Consensus 118 aSsGN~g~alA~~aa~~G~~~~i~vp~~ 145 (442)
T PRK05638 118 ASDGNAAASVAAYSARAGKEAFVVVPRK 145 (442)
T ss_pred eCCChHHHHHHHHHHHcCCCEEEEEeCC
Confidence 6999999999999999999999999654
No 399
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=52.13 E-value=20 Score=33.77 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=26.9
Q ss_pred CeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 61 CVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 61 ~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+++-|.=.-.|.||..+|..++..|++|+++...
T Consensus 3 ~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~ 36 (311)
T PRK06130 3 PIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVM 36 (311)
T ss_pred CccEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 4444444467999999999999999999988753
No 400
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=51.96 E-value=16 Score=37.69 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=23.4
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
-.|.||..||..|++.|+.|+++-..
T Consensus 12 GaG~MG~gIA~~la~aG~~V~l~d~~ 37 (503)
T TIGR02279 12 GAGAMGAGIAQVAASAGHQVLLYDIR 37 (503)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 46999999999999999999988754
No 401
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=51.58 E-value=44 Score=28.64 Aligned_cols=36 Identities=14% Similarity=0.058 Sum_probs=28.3
Q ss_pred CeeeeccCCccHHHHHHHHHHH----HCCCEEEEEecCCCC
Q 021383 61 CVRYIDNFSSGHRGAASTEHLI----KMGYAVIFLYRRGTC 97 (313)
Q Consensus 61 ~VR~ItN~SSG~~G~~lAe~~~----~~Ga~V~~i~g~~s~ 97 (313)
|-||+++.+ |.||..+.-+.- ..+-.|+.+.|.+++
T Consensus 40 ~~~~~~~~~-g~mG~~lp~aiGaala~~~~~vv~i~GDG~f 79 (178)
T cd02002 40 PGSYFTLRG-GGLGWGLPAAVGAALANPDRKVVAIIGDGSF 79 (178)
T ss_pred CCCeeccCC-ccccchHHHHHHHHhcCCCCeEEEEEcCchh
Confidence 789999988 999977765543 346679999998875
No 402
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=51.45 E-value=25 Score=30.22 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+|..|..+|..+++.|..|++++|.
T Consensus 175 ~G~SA~d~a~~l~~~g~~V~~~~R~ 199 (203)
T PF13738_consen 175 GGNSAVDIAYALAKAGKSVTLVTRS 199 (203)
T ss_dssp -SHHHHHHHHHHTTTCSEEEEEESS
T ss_pred ChHHHHHHHHHHHhhCCEEEEEecC
Confidence 5888999999999999999999986
No 403
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=51.29 E-value=51 Score=34.15 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=26.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
|+|||+++ |-.|.++|.+|..+|++|+++.+
T Consensus 380 k~vlIlGa-------------------GGagrAia~~L~~~G~~V~i~nR 410 (529)
T PLN02520 380 KLFVVIGA-------------------GGAGKALAYGAKEKGARVVIANR 410 (529)
T ss_pred CEEEEECC-------------------cHHHHHHHHHHHHCCCEEEEEcC
Confidence 88888876 56799999999999998887765
No 404
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=51.22 E-value=12 Score=36.15 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=24.1
Q ss_pred cCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 67 NFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 67 N~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
=--+|.||..||..++..|++|++.-..
T Consensus 8 ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 8 VIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred EEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 3357999999999999988999998864
No 405
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=50.80 E-value=28 Score=35.62 Aligned_cols=43 Identities=14% Similarity=0.158 Sum_probs=34.3
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHH-HCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLI-KMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~-~~Ga~V~~i~g~ 94 (313)
+.|+|.+-...-|+. |+ .+..+|.++||+|. .+|.+|.++.-.
T Consensus 203 rtvvv~atsd~p~~~----R~----~a~~~a~tiAEyfr~d~G~~VLli~Ds 246 (458)
T TIGR01041 203 RAVVFLNLADDPAVE----RI----VTPRMALTAAEYLAFEKDMHVLVILTD 246 (458)
T ss_pred eEEEEEECCCCCHHH----HH----HHHHHHHHHHHHHHHccCCcEEEEEcC
Confidence 677777776666666 22 46789999999999 799999999854
No 406
>PRK06381 threonine synthase; Validated
Probab=50.77 E-value=1.5e+02 Score=28.05 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=25.3
Q ss_pred CCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 68 ~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.|||-+|.++|-++...|+.++++....
T Consensus 69 aSsGN~g~alA~~aa~~G~~~~ivvp~~ 96 (319)
T PRK06381 69 GTCGNYGASIAYFARLYGLKAVIFIPRS 96 (319)
T ss_pred eCCcHHHHHHHHHHHHcCCcEEEEECCC
Confidence 4889999999999999999999999754
No 407
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.64 E-value=97 Score=29.91 Aligned_cols=55 Identities=16% Similarity=0.019 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 18 ~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.|..|..|.+.++.+ +.++.| |+|+|-+. |..-|.-+|..|.++||.||..|..+
T Consensus 140 ~PcTp~avi~lL~~~---~i~l~G--k~vvViGr------------------S~iVGkPla~lL~~~~aTVt~chs~T 194 (294)
T PRK14187 140 IPCTPKGCLYLIKTI---TRNLSG--SDAVVIGR------------------SNIVGKPMACLLLGENCTVTTVHSAT 194 (294)
T ss_pred cCcCHHHHHHHHHHh---CCCCCC--CEEEEECC------------------CccchHHHHHHHhhCCCEEEEeCCCC
Confidence 366787777655432 235666 88888765 56669999999999999999999753
No 408
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=50.57 E-value=38 Score=33.74 Aligned_cols=30 Identities=17% Similarity=0.252 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecCCCCCC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRRGTCEP 99 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P 99 (313)
+|-.|..+|..|..+|.+|+++.+...+.|
T Consensus 183 gG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 212 (461)
T PRK05249 183 AGVIGCEYASIFAALGVKVTLINTRDRLLS 212 (461)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence 788999999999999999999998765555
No 409
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=50.51 E-value=28 Score=33.83 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHHCCCEEEEEecC
Q 021383 71 GHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 71 G~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|-.|.++|.++.++|++|+++-+.
T Consensus 9 Gi~Gls~A~~l~~~g~~V~vle~~ 32 (416)
T PRK00711 9 GVIGVTSAWYLAQAGHEVTVIDRQ 32 (416)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 889999999999999999999875
No 410
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.44 E-value=35 Score=34.31 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.2
Q ss_pred cHHHHHHHHHHHHCCCEEEEEecC
Q 021383 71 GHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 71 G~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|..|.++|+.|..+|++|+++.+.
T Consensus 25 G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 25 GVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 677999999999999999998754
No 411
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=50.06 E-value=36 Score=33.05 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=27.5
Q ss_pred CCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 42 ~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++|+|+|++|| ..|..++.++.++|+.|+++...
T Consensus 11 ~~~~ilIiG~g-------------------~~~~~~~~a~~~~G~~v~~~~~~ 44 (395)
T PRK09288 11 SATRVMLLGSG-------------------ELGKEVAIEAQRLGVEVIAVDRY 44 (395)
T ss_pred CCCEEEEECCC-------------------HHHHHHHHHHHHCCCEEEEEeCC
Confidence 45789998774 45778899999999999988864
No 412
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=49.91 E-value=19 Score=33.44 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.8
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
-.|.+|..+|..|.+.|++|+++.+.
T Consensus 7 G~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 7 GAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 46999999999999999999999974
No 413
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=49.78 E-value=20 Score=33.68 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=23.6
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
-.|.||..+|..+++.|++|+++.+.
T Consensus 8 G~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 8 GAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 36999999999999999999998875
No 414
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=49.73 E-value=36 Score=31.90 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.7
Q ss_pred ccHHHHHHHHHHHHCC-CEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMG-YAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~G-a~V~~i~g~ 94 (313)
+|.+|.++|.++..+| .+|+++.+.
T Consensus 131 aGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 131 AGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4899999999999999 788888764
No 415
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=49.63 E-value=65 Score=31.17 Aligned_cols=54 Identities=19% Similarity=0.094 Sum_probs=41.7
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 18 ~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.|..|..|.+.++.+ +-++.| |+|+|-+- |..-|.-+|..|.++||.||..|..
T Consensus 147 ~PcTp~avi~lL~~~---~i~l~G--k~vvVIGR------------------S~iVGkPla~lL~~~~ATVtvchs~ 200 (299)
T PLN02516 147 LPCTPKGCLELLSRS---GIPIKG--KKAVVVGR------------------SNIVGLPVSLLLLKADATVTVVHSR 200 (299)
T ss_pred CCCCHHHHHHHHHHh---CCCCCC--CEEEEECC------------------CccchHHHHHHHHHCCCEEEEeCCC
Confidence 467788877666543 235776 88888764 5566999999999999999999975
No 416
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=49.61 E-value=18 Score=33.83 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.9
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
-.|.||..+|..+++.|++|+.+.+.
T Consensus 6 G~G~mG~~iA~~l~~~G~~V~~~dr~ 31 (291)
T TIGR01505 6 GLGIMGSPMSINLAKAGYQLHVTTIG 31 (291)
T ss_pred EecHHHHHHHHHHHHCCCeEEEEcCC
Confidence 37999999999999999999977654
No 417
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=49.50 E-value=1.8e+02 Score=29.08 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=26.2
Q ss_pred ccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 66 DNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 66 tN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
--.|+|-+|.++|-++...|..++++....
T Consensus 68 v~aSsGN~g~a~A~~a~~~G~~~~iv~p~~ 97 (409)
T TIGR02079 68 VCASAGNHAQGFAYACRHLGVHGTVFMPAT 97 (409)
T ss_pred EEECccHHHHHHHHHHHHcCCCEEEEECCC
Confidence 334899999999999999999999999654
No 418
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.50 E-value=89 Score=29.90 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=43.9
Q ss_pred hhhccCC--CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEE
Q 021383 11 SFFDSAP--PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAV 88 (313)
Q Consensus 11 ~ff~~~~--~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V 88 (313)
++|.+.. .|..|..|.+.++.+ +-++.| |+|+|-+. |+.-|.-+|..|.++||.|
T Consensus 129 ~l~~g~~~~~PcTp~av~~lL~~~---~i~l~G--k~vvViGr------------------S~~VGkPla~lL~~~~AtV 185 (278)
T PRK14172 129 KFYKGEKCFLPCTPNSVITLIKSL---NIDIEG--KEVVVIGR------------------SNIVGKPVAQLLLNENATV 185 (278)
T ss_pred HHhCCCCCCcCCCHHHHHHHHHHh---CCCCCC--CEEEEECC------------------CccchHHHHHHHHHCCCEE
Confidence 4454433 366777777655443 235667 88888765 5566999999999999999
Q ss_pred EEEecC
Q 021383 89 IFLYRR 94 (313)
Q Consensus 89 ~~i~g~ 94 (313)
|..|..
T Consensus 186 t~chs~ 191 (278)
T PRK14172 186 TICHSK 191 (278)
T ss_pred EEeCCC
Confidence 999975
No 419
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=49.27 E-value=31 Score=32.66 Aligned_cols=28 Identities=7% Similarity=0.102 Sum_probs=25.2
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
|+|=.|.++|-++..+|+.++++..+..
T Consensus 61 s~GN~g~alA~~a~~~G~~~~i~v~~~~ 88 (307)
T cd06449 61 IQSNHTRQVAAVAAKLGLKCVLVQENWV 88 (307)
T ss_pred chhHHHHHHHHHHHHcCCeEEEEecCCC
Confidence 7899999999999999999999997643
No 420
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.27 E-value=76 Score=30.24 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 19 LNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 19 ~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
+..+.-+...++.+ ..++.| |+|+|-+ .||.-|..+|..|+.+|+.|++.|+
T Consensus 140 p~T~~gii~~L~~~---~i~l~G--k~vvViG------------------~gg~vGkpia~~L~~~gatVtv~~~ 191 (283)
T PRK14192 140 SATPAGIMRLLKAY---NIELAG--KHAVVVG------------------RSAILGKPMAMMLLNANATVTICHS 191 (283)
T ss_pred CCcHHHHHHHHHHc---CCCCCC--CEEEEEC------------------CcHHHHHHHHHHHHhCCCEEEEEeC
Confidence 34454455444321 234666 7777754 4677899999999999999999997
No 421
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=49.11 E-value=18 Score=38.88 Aligned_cols=35 Identities=11% Similarity=0.129 Sum_probs=31.5
Q ss_pred CCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 60 RCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 60 ~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.+||-|.=--.|.||..||..|+..|+.|+++-..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~ 345 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDIN 345 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCCCeEEEEeCC
Confidence 37888888899999999999999999999998854
No 422
>PRK09224 threonine dehydratase; Reviewed
Probab=48.96 E-value=1.6e+02 Score=30.39 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=44.9
Q ss_pred CCccHHHHHHHHHHHHCCCEEEEEecCCCCCCccCCCCCcccchhhhccCCccEEeeCccHHHHHHHHHHHHHhhhcccc
Q 021383 68 FSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLL 147 (313)
Q Consensus 68 ~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~m~~a~~~~~~~~~~~~l 147 (313)
.|+|=.|.++|-++...|..++.+..... |. .-.+.++.-+...+.+...+.+.+..+. ++. ...+..
T Consensus 74 aSaGNha~avA~aa~~lGi~~~IvmP~~t--p~-------~K~~~~r~~GA~Vi~~g~~~~~a~~~a~-~l~--~~~g~~ 141 (504)
T PRK09224 74 ASAGNHAQGVALSAARLGIKAVIVMPVTT--PD-------IKVDAVRAFGGEVVLHGDSFDEAYAHAI-ELA--EEEGLT 141 (504)
T ss_pred ECcCHHHHHHHHHHHHcCCCEEEEECCCC--CH-------HHHHHHHhCCCEEEEECCCHHHHHHHHH-HHH--HhcCCE
Confidence 58999999999999999999999996532 21 1122223233333434333344444442 222 234666
Q ss_pred cccccccH
Q 021383 148 LKLPFTTI 155 (313)
Q Consensus 148 ~~~~f~t~ 155 (313)
+..+|...
T Consensus 142 ~v~~f~~~ 149 (504)
T PRK09224 142 FIHPFDDP 149 (504)
T ss_pred EeCCCCCc
Confidence 77788643
No 423
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=48.95 E-value=27 Score=33.37 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=33.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHC-CCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKM-GYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~-Ga~V~~i~g~ 94 (313)
+.|+|.+-.-.-|+. |+ -...+|.++||+|..+ |.+|.++.-.
T Consensus 131 ~tv~v~~t~~~~~~~----r~----~a~~~a~aiAEyfrd~~g~~VLl~~D~ 174 (276)
T cd01135 131 RVVLFLNLANDPTIE----RI----ITPRMALTTAEYLAYEKGKHVLVILTD 174 (276)
T ss_pred eEEEEEecCCCCHHH----HH----HHHHHHHHHHHHHHhccCCeEEEEEcC
Confidence 677777766666655 33 3578899999999997 9999999864
No 424
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=48.72 E-value=44 Score=33.04 Aligned_cols=52 Identities=23% Similarity=0.285 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 23 AAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 23 ~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
++|...+......+ | +||.|-| .=||+ .||-||..||-.++.+||.++++..
T Consensus 84 dRia~sMi~~Ae~~----G-----~i~pg~s-tliEp---------TSGNtGigLA~~~a~~Gyk~i~tmP 135 (362)
T KOG1252|consen 84 DRIAWSMIEDAEKK----G-----LITPGKS-TLIEP---------TSGNTGIGLAYMAALRGYKCIITMP 135 (362)
T ss_pred HHHHHHHHHHHHHc----C-----CccCCce-EEEec---------CCCchHHHHHHHHHHcCceEEEEec
Confidence 45666665555432 2 5666633 33563 8999999999999999999999984
No 425
>PRK08329 threonine synthase; Validated
Probab=48.64 E-value=1.1e+02 Score=29.75 Aligned_cols=32 Identities=16% Similarity=0.009 Sum_probs=27.1
Q ss_pred eeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 64 YIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 64 ~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
-|--.|||=+|.++|-++...|..++++....
T Consensus 106 ~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~ 137 (347)
T PRK08329 106 EVVIDSSGNAALSLALYSLSEGIKVHVFVSYN 137 (347)
T ss_pred EEEEECCCcHHHHHHHHHHHcCCcEEEEECCC
Confidence 34446899999999999999999999998653
No 426
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=48.61 E-value=21 Score=34.02 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=23.6
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
-.|.||.++|..+.+.|++|+++.+.
T Consensus 7 GaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 7 GAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 36999999999999999999988874
No 427
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=48.33 E-value=18 Score=33.74 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.7
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEec
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
-.|.||..+|..++.+|++|+++..
T Consensus 10 G~G~mG~~ia~~la~~g~~V~~~d~ 34 (282)
T PRK05808 10 GAGTMGNGIAQVCAVAGYDVVMVDI 34 (282)
T ss_pred ccCHHHHHHHHHHHHCCCceEEEeC
Confidence 4699999999999999999998864
No 428
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=47.95 E-value=1.8e+02 Score=28.92 Aligned_cols=31 Identities=13% Similarity=0.340 Sum_probs=27.2
Q ss_pred eeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 64 YIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 64 ~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.++ .|||-+|.++|-++..+|+.++++....
T Consensus 119 vv~-aSsGN~g~alA~~a~~~G~~~~Ivvp~~ 149 (399)
T PRK08206 119 FAT-ATDGNHGRGVAWAAQQLGQKAVIYMPKG 149 (399)
T ss_pred EEE-eCCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 444 5999999999999999999999999654
No 429
>PRK12483 threonine dehydratase; Reviewed
Probab=47.81 E-value=1.7e+02 Score=30.40 Aligned_cols=76 Identities=17% Similarity=0.278 Sum_probs=45.0
Q ss_pred CCccHHHHHHHHHHHHCCCEEEEEecCCCCCCccCCCCCcccchhhhccCCccEEeeCccHHHHHHHHHHHHHhhhcccc
Q 021383 68 FSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLL 147 (313)
Q Consensus 68 ~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~m~~a~~~~~~~~~~~~l 147 (313)
.|+|-.|.++|-++...|..++++..... |. .-.+.++.-+...+.+...+.+.+..|.+ +. +..+..
T Consensus 91 aSaGNha~gvA~aA~~lGi~~~IvmP~~t--p~-------~Kv~~~r~~GAeVil~g~~~d~a~~~A~~-la--~e~g~~ 158 (521)
T PRK12483 91 ASAGNHAQGVALAAARLGVKAVIVMPRTT--PQ-------LKVDGVRAHGGEVVLHGESFPDALAHALK-LA--EEEGLT 158 (521)
T ss_pred ECCCHHHHHHHHHHHHhCCCEEEEECCCC--CH-------HHHHHHHHCCCEEEEECCCHHHHHHHHHH-HH--HhcCCe
Confidence 48999999999999999999999996543 21 11122222233334343333444444432 21 234667
Q ss_pred cccccccH
Q 021383 148 LKLPFTTI 155 (313)
Q Consensus 148 ~~~~f~t~ 155 (313)
+..+|...
T Consensus 159 ~v~pfdd~ 166 (521)
T PRK12483 159 FVPPFDDP 166 (521)
T ss_pred eeCCCCCh
Confidence 77888643
No 430
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.65 E-value=71 Score=30.71 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 18 ~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.|..|..+.+.++.+ +-++.| |+|+|-+. |+.-|.-+|..|.++||.||..|..+
T Consensus 139 ~PcTp~av~~lL~~y---~i~l~G--K~vvViGr------------------S~iVGkPla~lL~~~~ATVtichs~T 193 (288)
T PRK14171 139 IPCTALGCLAVIKKY---EPNLTG--KNVVIIGR------------------SNIVGKPLSALLLKENCSVTICHSKT 193 (288)
T ss_pred cCCCHHHHHHHHHHh---CCCCCC--CEEEEECC------------------CCcchHHHHHHHHHCCCEEEEeCCCC
Confidence 366777777655433 235767 88888765 55669999999999999999999753
No 431
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=47.63 E-value=22 Score=34.42 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=24.7
Q ss_pred CCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 68 FSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 68 ~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.+||-+|.+||-.+..+||.++++.-+
T Consensus 68 ~TSGNTGI~LA~vaa~~Gy~~iivmP~ 94 (300)
T COG0031 68 ATSGNTGIALAMVAAAKGYRLIIVMPE 94 (300)
T ss_pred cCCChHHHHHHHHHHHcCCcEEEEeCC
Confidence 389999999999999999999999953
No 432
>COG1798 DPH5 Diphthamide biosynthesis methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=47.43 E-value=49 Score=31.33 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=48.1
Q ss_pred hhHHhhhccCCCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCC
Q 021383 7 SEIESFFDSAPPLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGY 86 (313)
Q Consensus 7 ~~~~~ff~~~~~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga 86 (313)
+.++++|..+-.+++.+++...-..++..-. .+ .++++|+|-+.. -++=..|.-.+.++|+
T Consensus 44 e~le~~~gkev~~~~R~dlE~~~~~il~~a~--~~--~Vall~~GDpmv---------------ATTH~~L~~~A~~~Gi 104 (260)
T COG1798 44 EKLEELIGKEVILLDREDLEENSRSILDRAK--DK--DVALLVAGDPMV---------------ATTHVDLRIEAKRRGI 104 (260)
T ss_pred HHHHHHhCCceEeccHHHHhhcchhHHHHHh--cC--CEEEEecCCcce---------------ehhHHHHHHHHHHcCC
Confidence 3678888888888999998887334454321 22 699999993221 2345667777788888
Q ss_pred EEEEEecCC
Q 021383 87 AVIFLYRRG 95 (313)
Q Consensus 87 ~V~~i~g~~ 95 (313)
+|-+||+.+
T Consensus 105 ~v~vIh~~S 113 (260)
T COG1798 105 EVRVIHGAS 113 (260)
T ss_pred cEEEEcccH
Confidence 888888764
No 433
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=47.42 E-value=21 Score=36.72 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=26.7
Q ss_pred eeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 62 VRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 62 VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++-|.=--.|.||..||..++..|++|+++-..
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~ 39 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLYDAR 39 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 444444457999999999999999999988754
No 434
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=47.07 E-value=96 Score=29.89 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=21.5
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCE
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYA 87 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~ 87 (313)
||.+|||+- +||. |.+||.-++.-.-+
T Consensus 3 RKvalITGa-----------------nSgl-Gl~i~~RLl~~~De 29 (341)
T KOG1478|consen 3 RKVALITGA-----------------NSGL-GLAICKRLLAEDDE 29 (341)
T ss_pred ceEEEEecC-----------------CCcc-cHHHHHHHHhccCC
Confidence 477788765 8886 99999999986555
No 435
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=47.06 E-value=36 Score=31.05 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=30.2
Q ss_pred CCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 39 ESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 39 l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
+.| |+|||.+| |.-|..=|+-|+..|+.|++++...
T Consensus 10 l~~--k~VlvvGg-------------------G~va~rKa~~ll~~ga~v~Vvs~~~ 45 (210)
T COG1648 10 LEG--KKVLVVGG-------------------GSVALRKARLLLKAGADVTVVSPEF 45 (210)
T ss_pred cCC--CEEEEECC-------------------CHHHHHHHHHHHhcCCEEEEEcCCc
Confidence 556 99999999 5557778999999999999999653
No 436
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=47.06 E-value=27 Score=32.77 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=23.5
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
-.|.||..+|..++.+|++|+++...
T Consensus 11 GaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 11 GAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 57999999999999999999988754
No 437
>PLN03013 cysteine synthase
Probab=46.99 E-value=2.1e+02 Score=29.11 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=25.3
Q ss_pred CCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 68 FSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 68 ~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.|||-+|.++|-++..+|+.++++..+.
T Consensus 181 aSSGN~G~ALA~~a~~~G~~~~VvvP~~ 208 (429)
T PLN03013 181 PTSGNTGIGLAFIAASRGYRLILTMPAS 208 (429)
T ss_pred ECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4999999999999999999999998653
No 438
>PRK06370 mercuric reductase; Validated
Probab=46.84 E-value=40 Score=33.74 Aligned_cols=55 Identities=20% Similarity=0.324 Sum_probs=39.3
Q ss_pred CceEEEecCCcccc-----cCCCCeeeecc---------------CCccHHHHHHHHHHHHCCCEEEEEecCCCCCC
Q 021383 43 RRVACVTSGGTTVP-----LEQRCVRYIDN---------------FSSGHRGAASTEHLIKMGYAVIFLYRRGTCEP 99 (313)
Q Consensus 43 ~k~VLITsGgT~ep-----ID~~~VR~ItN---------------~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P 99 (313)
-++++|-.|..... +| ..++++. .-.|-.|..+|..+.++|.+|+++.+...+.|
T Consensus 134 ~d~lViATGs~p~~p~i~G~~--~~~~~~~~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~ 208 (463)
T PRK06370 134 AKRIFINTGARAAIPPIPGLD--EVGYLTNETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLP 208 (463)
T ss_pred eCEEEEcCCCCCCCCCCCCCC--cCceEcchHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCc
Confidence 37888888876532 23 3344432 12788999999999999999999998655444
No 439
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=46.76 E-value=32 Score=33.10 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=24.6
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
|+|-.|.++|-++...|+.++++..+.
T Consensus 73 s~gN~g~alA~~a~~~G~~~~i~vp~~ 99 (331)
T PRK03910 73 IQSNHARQTAAAAAKLGLKCVLLLENP 99 (331)
T ss_pred chhHHHHHHHHHHHHhCCcEEEEEcCC
Confidence 689999999999999999999999764
No 440
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=46.63 E-value=32 Score=35.06 Aligned_cols=43 Identities=23% Similarity=0.320 Sum_probs=32.3
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.|+|-+-.-.-|.. |+ -...+|.++||+|..+|.+|.++.-.
T Consensus 218 rtvvv~atsd~p~~~----R~----~a~~~A~tiAEyfrd~G~~VLl~~Ds 260 (444)
T PRK08972 218 RSVVVAAPADTSPLM----RL----KGCETATTIAEYFRDQGLNVLLLMDS 260 (444)
T ss_pred cEEEEEECCCCCHHH----HH----HHHHHHHHHHHHHHHcCCCEEEEEcC
Confidence 566666555544554 33 27889999999999999999999854
No 441
>PRK08813 threonine dehydratase; Provisional
Probab=46.35 E-value=2.1e+02 Score=28.05 Aligned_cols=30 Identities=17% Similarity=0.206 Sum_probs=26.0
Q ss_pred ccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 66 DNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 66 tN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
--.|||-.|.++|-++...|+.++++.-..
T Consensus 85 V~aSsGN~G~alA~aa~~~Gi~~~IvvP~~ 114 (349)
T PRK08813 85 ICASAGNHAQGVAWSAYRLGVQAITVMPHG 114 (349)
T ss_pred EEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 344999999999999999999999998543
No 442
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=46.34 E-value=23 Score=32.74 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.|-.|.++|-++.++|++|+++-..
T Consensus 7 aGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 7 AGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred cCHHHHHHHHHHHHCCCeEEEEeec
Confidence 4889999999999999999999986
No 443
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=46.33 E-value=23 Score=33.25 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=22.5
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.|.||..+|..+++.|++|+...+.
T Consensus 4 lG~mG~~mA~~L~~~G~~V~v~dr~ 28 (288)
T TIGR01692 4 LGNMGGPMAANLLKAGHPVRVFDLF 28 (288)
T ss_pred ccHhHHHHHHHHHhCCCeEEEEeCC
Confidence 6999999999999999999887654
No 444
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=46.23 E-value=49 Score=34.19 Aligned_cols=69 Identities=12% Similarity=0.115 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHHHHhccCCCCCCCceEEEecCCccc-------ccCCCCeeeeccCCccHHHHHHHHHH----HHCCCEE
Q 021383 20 NDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTV-------PLEQRCVRYIDNFSSGHRGAASTEHL----IKMGYAV 88 (313)
Q Consensus 20 ~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~e-------pID~~~VR~ItN~SSG~~G~~lAe~~----~~~Ga~V 88 (313)
..+..+...+.+++. . ..++++.+|+.. ++.. |-||+++.+-|.||+.+.-++ ...+..|
T Consensus 372 i~~~~~~~~l~~~l~------~--~~ii~~d~g~~~~~~~~~~~~~~-p~~~~~~~~~g~mG~glpaAiGa~la~p~~~v 442 (572)
T PRK06456 372 LKPWKIMKTIRQALP------R--DAIVTTGVGQHQMWAEVFWEVLE-PRTFLTSSGMGTMGFGLPAAMGAKLARPDKVV 442 (572)
T ss_pred cCHHHHHHHHHHhCC------C--CEEEEECCcHHHHHHHHhcCcCC-CCcEEcCCCcccccchhHHHHHHHHhCCCCeE
Confidence 345555555555442 2 446666666543 3332 789999988899976665544 3446789
Q ss_pred EEEecCCCC
Q 021383 89 IFLYRRGTC 97 (313)
Q Consensus 89 ~~i~g~~s~ 97 (313)
+.|.|.+++
T Consensus 443 v~i~GDG~f 451 (572)
T PRK06456 443 VDLDGDGSF 451 (572)
T ss_pred EEEEccchH
Confidence 999999885
No 445
>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=46.08 E-value=51 Score=32.20 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=27.3
Q ss_pred CCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEe
Q 021383 42 TRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (313)
Q Consensus 42 ~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~ 92 (313)
.+|-|+||+. | ||- |..+|..+.++|+.|.-=+
T Consensus 28 ~~k~VlITGC------D-----------SGf-G~~LA~~L~~~Gf~V~Agc 60 (322)
T KOG1610|consen 28 SDKAVLITGC------D-----------SGF-GRLLAKKLDKKGFRVFAGC 60 (322)
T ss_pred CCcEEEEecC------C-----------cHH-HHHHHHHHHhcCCEEEEEe
Confidence 3488999998 4 775 9999999999999885433
No 446
>PRK14031 glutamate dehydrogenase; Provisional
Probab=46.06 E-value=70 Score=32.66 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=36.6
Q ss_pred HHHHHHHHHhc-cCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEec
Q 021383 25 ISQKLKEFIAL-NSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 25 I~~~v~~~l~~-~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
++..+...+.. ..++.| ++|+|-++ |.-|...|+.+...|+.|+.|+-
T Consensus 211 v~~~~~~~~~~~g~~l~g--~rVaVQGf-------------------GNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 211 NIYFLMEMLKTKGTDLKG--KVCLVSGS-------------------GNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred HHHHHHHHHHhcCCCcCC--CEEEEECC-------------------CHHHHHHHHHHHHCCCEEEEEEC
Confidence 44455555543 235666 89988877 77799999999999999999885
No 447
>PRK12831 putative oxidoreductase; Provisional
Probab=46.05 E-value=34 Score=34.57 Aligned_cols=33 Identities=24% Similarity=0.528 Sum_probs=27.9
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
|+|+|-+| |-.|..+|..+.+.|++|+++++..
T Consensus 282 k~VvVIGg-------------------G~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGG-------------------GNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECC-------------------cHHHHHHHHHHHHcCCEEEEEeecC
Confidence 78888777 4458889999999999999999754
No 448
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=45.94 E-value=26 Score=36.74 Aligned_cols=49 Identities=16% Similarity=0.101 Sum_probs=43.2
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
++++||+.--. +|.+-.|.+..|-.-+=.+|++...+|++|.||+|...
T Consensus 5 ~~~~VTtalpY----~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDe 53 (558)
T COG0143 5 KKILVTTALPY----PNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDE 53 (558)
T ss_pred CcEEEecCCCC----CCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 78999987544 35889999999999999999999999999999999765
No 449
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=45.70 E-value=22 Score=33.91 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=24.0
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
-.|.||..+|..+.++|++|+++.++
T Consensus 9 G~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 9 GAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 47999999999999999999999875
No 450
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=45.53 E-value=91 Score=25.69 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=19.1
Q ss_pred cHHHHHHHHHHHHCC-CEEEEEec
Q 021383 71 GHRGAASTEHLIKMG-YAVIFLYR 93 (313)
Q Consensus 71 G~~G~~lAe~~~~~G-a~V~~i~g 93 (313)
|.+|.++|+.+...| +.|+++.+
T Consensus 28 G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 28 GGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred cHHHHHHHHHHHHCCCCEEEEEcC
Confidence 789999999999996 66776654
No 451
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=45.48 E-value=40 Score=31.14 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=28.5
Q ss_pred CceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 43 RRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 43 ~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+++|||-+| |.-|..=++.|++.||.|++|+-.
T Consensus 25 ~~~VLVVGG-------------------G~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 25 KIKVLIIGG-------------------GKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCEEEEECC-------------------CHHHHHHHHHHHhCCCEEEEEcCC
Confidence 389999999 666888889999999999999854
No 452
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.31 E-value=1.2e+02 Score=29.11 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 18 ~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.|..|..+.+.++.+ +-++.| |+|+|-+. |+.-|.-+|..|..+|+.|+..|..
T Consensus 138 ~PcTp~aii~lL~~~---~i~l~G--k~vvViGr------------------s~iVGkPla~lL~~~~atVt~~hs~ 191 (285)
T PRK14189 138 RPCTPYGVMKMLESI---GIPLRG--AHAVVIGR------------------SNIVGKPMAMLLLQAGATVTICHSK 191 (285)
T ss_pred cCCCHHHHHHHHHHc---CCCCCC--CEEEEECC------------------CCccHHHHHHHHHHCCCEEEEecCC
Confidence 356677777555432 235666 88888765 4556999999999999999998864
No 453
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=45.06 E-value=40 Score=34.49 Aligned_cols=43 Identities=16% Similarity=0.199 Sum_probs=32.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHH-HCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLI-KMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~-~~Ga~V~~i~g~ 94 (313)
+.|+|-+-...-|+. |+ .+..+|.++||+|. .+|.+|.++.-.
T Consensus 205 rtvvV~atsd~p~~~----R~----~a~~~a~tiAEyfr~d~G~~VLli~Ds 248 (460)
T PRK04196 205 RSVVFLNLADDPAIE----RI----LTPRMALTAAEYLAFEKGMHVLVILTD 248 (460)
T ss_pred eEEEEEEcCCCCHHH----HH----HHHHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 666766665555554 32 46789999999999 699999999865
No 454
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=45.01 E-value=25 Score=32.80 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.8
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.|.||.++|..|.++|+.|+.+.+.
T Consensus 8 ~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 8 LGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred ecHHHHHHHHHHHHCCCEEEEEECC
Confidence 7999999999999999999888754
No 455
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.84 E-value=1.3e+02 Score=28.81 Aligned_cols=54 Identities=13% Similarity=0.059 Sum_probs=41.1
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHH--CCCEEEEEecC
Q 021383 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIK--MGYAVIFLYRR 94 (313)
Q Consensus 18 ~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~--~Ga~V~~i~g~ 94 (313)
.|..|..+.+.++.+ +-++.| |+|+|-+. |+.-|.-+|..|.+ +||.||+.|..
T Consensus 138 ~PcTp~av~~ll~~~---~i~l~G--k~vvViGr------------------S~~VGkPla~lL~~~~~~atVtvchs~ 193 (284)
T PRK14193 138 LPCTPRGIVHLLRRY---DVELAG--AHVVVIGR------------------GVTVGRPIGLLLTRRSENATVTLCHTG 193 (284)
T ss_pred CCCCHHHHHHHHHHh---CCCCCC--CEEEEECC------------------CCcchHHHHHHHhhccCCCEEEEeCCC
Confidence 367788888666543 235666 88888654 66779999999998 89999999975
No 456
>PF15581 Imm35: Immunity protein 35
Probab=44.65 E-value=42 Score=26.73 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHH
Q 021383 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHR 73 (313)
Q Consensus 18 ~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~ 73 (313)
|-.+.+++...+.....+. ++ .+++|---+..-+.| .||| ||++|+.
T Consensus 44 RGl~~~qV~~kl~ava~~~---~~--~~~vvKkE~~~Iwfd--~VrF--~f~~GrL 90 (93)
T PF15581_consen 44 RGLPEEQVLYKLEAVAAKG---PE--AKIVVKKEGNIIWFD--EVRF--NFDEGRL 90 (93)
T ss_pred cCCCHHHHHHHHHHHHhcC---CC--cceEEEecCCeEEEc--ceeE--EeccceE
Confidence 4456677787777666542 22 566666677788999 9999 6888874
No 457
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=44.59 E-value=27 Score=29.29 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=28.6
Q ss_pred CeeeeccC----CccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 61 CVRYIDNF----SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 61 ~VR~ItN~----SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.|+.+.|+ ++|+ |..+|+.+...|.+|++..+-+
T Consensus 38 ~vev~~np~~~~~~g~-G~~~a~~l~~~gvdvvi~~~iG 75 (121)
T COG1433 38 NVEVIENPAASAEKGA-GIRIAELLVDEGVDVVIASNIG 75 (121)
T ss_pred EEEEeecccccccCcc-hHHHHHHHHHcCCCEEEECccC
Confidence 68899998 3444 8999999999999999888644
No 458
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=44.53 E-value=42 Score=33.86 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=26.3
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecCCCCCC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRRGTCEP 99 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P 99 (313)
.|-.|..+|..|..+|.+|++|.+...+.|
T Consensus 182 gG~iG~E~A~~l~~~G~~Vtlv~~~~~il~ 211 (471)
T PRK06467 182 GGIIGLEMGTVYHRLGSEVDVVEMFDQVIP 211 (471)
T ss_pred CCHHHHHHHHHHHHcCCCEEEEecCCCCCC
Confidence 689999999999999999999997655544
No 459
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=44.47 E-value=39 Score=32.22 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHC-CCEEEEEecC
Q 021383 23 AAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKM-GYAVIFLYRR 94 (313)
Q Consensus 23 ~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~-Ga~V~~i~g~ 94 (313)
.++.+.+.++.... - ..+.|+|.+-...-|.. .+ .+..+|.++||+|... |.+|.++.-.
T Consensus 111 ~Ev~e~~~~~~~~~-~---~~~tvvv~~t~d~~~~~--r~------~~~~~a~~~AEyfr~~~g~~Vl~~~Ds 171 (274)
T cd01133 111 REGNDLYHEMKESG-V---LSKTALVYGQMNEPPGA--RA------RVALTGLTMAEYFRDEEGQDVLLFIDN 171 (274)
T ss_pred HHHHHHHHHHHhcC-C---cceeEEEEECCCCCHHH--HH------HHHHHHHHHHHHHHHhcCCeEEEEEeC
Confidence 34555455555432 1 22677777776666665 22 3568899999999988 9999999964
No 460
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=44.44 E-value=42 Score=32.81 Aligned_cols=27 Identities=15% Similarity=0.087 Sum_probs=22.8
Q ss_pred cHHHHHHHHHHHHCCCEEEEEecCCCC
Q 021383 71 GHRGAASTEHLIKMGYAVIFLYRRGTC 97 (313)
Q Consensus 71 G~~G~~lAe~~~~~Ga~V~~i~g~~s~ 97 (313)
|-.|..+|.++.++|.+|++|.+...+
T Consensus 153 G~ig~E~A~~l~~~g~~Vtlv~~~~~~ 179 (396)
T PRK09754 153 GTIGLELAASATQRRCKVTVIELAATV 179 (396)
T ss_pred CHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence 557999999999999999999875443
No 461
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=44.43 E-value=22 Score=36.37 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=23.3
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
-.|.||..+|..|+++|++|++.-..
T Consensus 11 G~G~MG~~iA~~la~~G~~V~v~D~~ 36 (495)
T PRK07531 11 GGGVIGGGWAARFLLAGIDVAVFDPH 36 (495)
T ss_pred CcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 58999999999999999999988653
No 462
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=44.39 E-value=25 Score=33.23 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=23.0
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
-.|.||..+|..+++.|+.|+++.+.
T Consensus 8 GlG~mG~~mA~~l~~~G~~V~v~d~~ 33 (296)
T PRK15461 8 GLGQMGSPMASNLLKQGHQLQVFDVN 33 (296)
T ss_pred eeCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 47999999999999999999877654
No 463
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=44.08 E-value=23 Score=38.02 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=31.0
Q ss_pred CCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 60 RCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 60 ~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.+++-|.=--.|.||..||..|+..|+.|+++-..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~ 345 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDIN 345 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhCCCeEEEEeCC
Confidence 36777888889999999999999999999998854
No 464
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=44.01 E-value=1.4e+02 Score=24.81 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=31.0
Q ss_pred CeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 61 CVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 61 ~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.||.|.-+.||+.-......++.+||+=++|.|-
T Consensus 28 ~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC 61 (124)
T PF02662_consen 28 NVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGC 61 (124)
T ss_pred CeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCC
Confidence 5999999999999999999999999997788763
No 465
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=43.59 E-value=47 Score=33.07 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=38.9
Q ss_pred CceEEEecCCcccccC---CCCeeeecc---------------CCccHHHHHHHHHHHHCCCEEEEEecCCCCCC
Q 021383 43 RRVACVTSGGTTVPLE---QRCVRYIDN---------------FSSGHRGAASTEHLIKMGYAVIFLYRRGTCEP 99 (313)
Q Consensus 43 ~k~VLITsGgT~epID---~~~VR~ItN---------------~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P 99 (313)
-++++|..|++...+. ...+.+++. .-.|-.|..+|..|.++|.+|+++.+...+.|
T Consensus 135 ~d~lViAtGs~p~~~pg~~~~~~~v~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 209 (462)
T PRK06416 135 AKNIILATGSRPRELPGIEIDGRVIWTSDEALNLDEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP 209 (462)
T ss_pred eCEEEEeCCCCCCCCCCCCCCCCeEEcchHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC
Confidence 4788888888764331 112222211 11688999999999999999999998655544
No 466
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=43.46 E-value=78 Score=27.57 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhccCCCCCCCceEEEecCCccc-------ccCCCCeeeeccCCccHHHHHHHHHHH----HCCCEEEE
Q 021383 22 RAAISQKLKEFIALNSSESGTRRVACVTSGGTTV-------PLEQRCVRYIDNFSSGHRGAASTEHLI----KMGYAVIF 90 (313)
Q Consensus 22 ~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~e-------pID~~~VR~ItN~SSG~~G~~lAe~~~----~~Ga~V~~ 90 (313)
|..+...+.+.+. . ..++++-+|+.. +++ .|-||+++...|.||+++.-++- ..+..|+.
T Consensus 3 ~~~~~~~l~~~l~------~--~~iiv~d~g~~~~~~~~~~~~~-~~~~~~~~~~~g~mG~~lp~aiGa~la~~~~~vv~ 73 (186)
T cd02015 3 PQEVIKELSELTP------G--DAIVTTDVGQHQMWAAQYYRFK-KPRSWLTSGGLGTMGFGLPAAIGAKVARPDKTVIC 73 (186)
T ss_pred HHHHHHHHHhhCC------C--CeEEEeCCcHHHHHHHHhcccC-CCCeEEeCCCccchhchHHHHHHHHHhCCCCeEEE
Confidence 4455555544442 2 456667666542 233 37889988778899976665443 34567999
Q ss_pred EecCCCC
Q 021383 91 LYRRGTC 97 (313)
Q Consensus 91 i~g~~s~ 97 (313)
+.|.+++
T Consensus 74 i~GDG~f 80 (186)
T cd02015 74 IDGDGSF 80 (186)
T ss_pred EEcccHH
Confidence 9998875
No 467
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=43.38 E-value=84 Score=28.56 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=21.6
Q ss_pred ccH--HHHHHHHHHHHCCCEEEEEecCC
Q 021383 70 SGH--RGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 70 SG~--~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
||| .+.++++.+.++|+.|+++-|..
T Consensus 34 sGKSTiA~ale~~L~~~G~~~y~LDGDn 61 (197)
T COG0529 34 SGKSTIANALEEKLFAKGYHVYLLDGDN 61 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEecChh
Confidence 555 46778889999999999999974
No 468
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=43.07 E-value=42 Score=33.39 Aligned_cols=32 Identities=22% Similarity=0.114 Sum_probs=26.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+|+|+++ |..|.++|+.|.++|+.|+.....
T Consensus 6 ~~~~v~G~-------------------g~~G~~~a~~l~~~g~~v~~~d~~ 37 (445)
T PRK04308 6 KKILVAGL-------------------GGTGISMIAYLRKNGAEVAAYDAE 37 (445)
T ss_pred CEEEEECC-------------------CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 78888877 567889999999999999987653
No 469
>PRK08639 threonine dehydratase; Validated
Probab=43.01 E-value=2.3e+02 Score=28.32 Aligned_cols=32 Identities=9% Similarity=0.054 Sum_probs=27.6
Q ss_pred eeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 64 YIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 64 ~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
-|--.|||-.|.++|-++...|..++++....
T Consensus 75 ~Vv~aSsGN~g~alA~~a~~~G~~~~IvmP~~ 106 (420)
T PRK08639 75 GVVCASAGNHAQGVAYACRHLGIPGVIFMPVT 106 (420)
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEEEEECCC
Confidence 34556999999999999999999999999543
No 470
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=42.91 E-value=28 Score=35.84 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=34.2
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.|+|.+.+..-|.. |++ +..+|.++||+|...|.+|.++.-.
T Consensus 199 ~tvvV~atad~~~~~----r~~----ap~~a~aiAEyfr~~G~~VLlv~Dd 241 (485)
T CHL00059 199 YTIVVAETADSPATL----QYL----APYTGAALAEYFMYRGRHTLIIYDD 241 (485)
T ss_pred ceEEEEeCCCCCHHH----HHH----HHHHHhhHHHHHHHcCCCEEEEEcC
Confidence 678888876665654 443 5677999999999999999999864
No 471
>PLN02550 threonine dehydratase
Probab=42.85 E-value=2.4e+02 Score=29.91 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=55.5
Q ss_pred eeccCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCccCCCCCcccchhhhccCCccEEeeCccHHHHHHHHHHHHHhhh
Q 021383 64 YIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVA 143 (313)
Q Consensus 64 ~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~m~~a~~~~~~~~~ 143 (313)
.|+ .|+|=.|.++|-++...|..++++..... |. .-.+.++.-+...+.+...+.+.+..|. ++. ..
T Consensus 160 VV~-aSaGNhAqgvA~aA~~lGika~IvmP~~t--p~-------~Kv~~~r~~GAeVvl~g~~~dea~~~A~-~la--~e 226 (591)
T PLN02550 160 VIC-SSAGNHAQGVALSAQRLGCDAVIAMPVTT--PE-------IKWQSVERLGATVVLVGDSYDEAQAYAK-QRA--LE 226 (591)
T ss_pred EEE-ECCCHHHHHHHHHHHHcCCCEEEEECCCC--CH-------HHHHHHHHcCCEEEEeCCCHHHHHHHHH-HHH--Hh
Confidence 344 69999999999999999999999995442 31 1122222223333434333333333332 222 23
Q ss_pred cccccccccccHHHHHHHHHHH-HHHhhhcCC-cceeee
Q 021383 144 GGLLLKLPFTTIFEYLQMLQMI-AVSSRSLGP-CSMFYL 180 (313)
Q Consensus 144 ~~~l~~~~f~t~~dy~~~l~~i-~~~l~~~~~-~d~~i~ 180 (313)
.+..+..+|....-... ...+ .+.+++.+. .|.+|.
T Consensus 227 ~g~~fi~pfddp~viaG-qgTig~EI~eQl~~~~D~Vvv 264 (591)
T PLN02550 227 EGRTFIPPFDHPDVIAG-QGTVGMEIVRQHQGPLHAIFV 264 (591)
T ss_pred cCCEEECCCCChHHHHH-HHHHHHHHHHHcCCCCCEEEE
Confidence 56677888965432222 1222 222344443 676665
No 472
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=42.65 E-value=24 Score=34.82 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.|.||..+|..|.++|+.|+++.+.
T Consensus 107 ~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 107 KGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred CChhhHHHHHHHHHCCCeEEEeCCC
Confidence 7999999999999999999888763
No 473
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=42.52 E-value=42 Score=33.42 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHHCCCEEEEEecCCCCCC
Q 021383 71 GHRGAASTEHLIKMGYAVIFLYRRGTCEP 99 (313)
Q Consensus 71 G~~G~~lAe~~~~~Ga~V~~i~g~~s~~P 99 (313)
|-.|..+|..|.++|.+|+++++...+.|
T Consensus 157 G~ig~E~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 157 GYISLEVLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred CHHHHHHHHHHHhCCCcEEEEecccccch
Confidence 56799999999999999999998654433
No 474
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=42.51 E-value=48 Score=33.26 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=37.9
Q ss_pred ceEEEecCCcccccC---CCCeeeeccC---------------CccHHHHHHHHHHHHCCCEEEEEecCCCCCC
Q 021383 44 RVACVTSGGTTVPLE---QRCVRYIDNF---------------SSGHRGAASTEHLIKMGYAVIFLYRRGTCEP 99 (313)
Q Consensus 44 k~VLITsGgT~epID---~~~VR~ItN~---------------SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P 99 (313)
++++|-.|.+....+ ...++++++. -.|-.|..+|..|.+.|.+|++|.+...+.|
T Consensus 133 d~lIiATGs~p~~p~~~~~~~~~~~~~~~~~~l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~ 206 (452)
T TIGR03452 133 DQIVIAAGSRPYIPPAIADSGVRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR 206 (452)
T ss_pred CEEEEEECCCCCCCCCCCCCCCEEEcHHHHHhhhhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence 566777776643211 1144555532 1788999999999999999999997654433
No 475
>PRK06936 type III secretion system ATPase; Provisional
Probab=42.32 E-value=28 Score=35.42 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=32.8
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.|+|-+=.-.-|+. |+ .+..+|.++||+|..+|.+|.++.-.
T Consensus 218 rtvvv~atsd~p~~~----R~----~a~~~a~tiAEyfrd~G~~Vll~~Ds 260 (439)
T PRK06936 218 KAVLVVATSDRPSME----RA----KAGFVATSIAEYFRDQGKRVLLLMDS 260 (439)
T ss_pred eeEEEEECCCCCHHH----HH----HHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 666666665555554 32 36788999999999999999999864
No 476
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=42.22 E-value=2.4e+02 Score=29.10 Aligned_cols=101 Identities=13% Similarity=0.157 Sum_probs=53.5
Q ss_pred CCccHHHHHHHHHHHHCCCEEEEEecCCCCCCccCCCCCcccchhhhccCCccEEeeCccHHHHHHHHHHHHHhhhcccc
Q 021383 68 FSSGHRGAASTEHLIKMGYAVIFLYRRGTCEPYCSSLPDDAFLECFEVTEESAVQVCQPYSEAVKRAIRDHHAAVAGGLL 147 (313)
Q Consensus 68 ~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~m~~a~~~~~~~~~~~~l 147 (313)
.|+|-.|.++|-++...|..++.+..... |. .-.+.++.-+...+.+.....+.+ ....++. ...+..
T Consensus 71 aSaGNha~~vA~aa~~~Gi~~~IvmP~~t--p~-------~Kv~~~r~~GA~Vvl~g~~~d~a~-~~a~~la--~~~g~~ 138 (499)
T TIGR01124 71 ASAGNHAQGVAFSAARLGLKALIVMPETT--PD-------IKVDAVRGFGGEVVLHGANFDDAK-AKAIELS--QEKGLT 138 (499)
T ss_pred ECCCHHHHHHHHHHHHcCCCEEEEECCCC--CH-------HHHHHHHhCCCEEEEeCcCHHHHH-HHHHHHH--HhcCCE
Confidence 58999999999999999999999986432 21 112222323333333332222222 2223332 235677
Q ss_pred cccccccHHHHHHHHHHHHHHhhhcC-Ccceeee
Q 021383 148 LKLPFTTIFEYLQMLQMIAVSSRSLG-PCSMFYL 180 (313)
Q Consensus 148 ~~~~f~t~~dy~~~l~~i~~~l~~~~-~~d~~i~ 180 (313)
+..+|....-....-..-.+.+++.+ ..|.+|.
T Consensus 139 ~i~p~~~~~~i~G~gtig~EI~~q~~~~~D~vvv 172 (499)
T TIGR01124 139 FIHPFDDPLVIAGQGTLALEILRQVANPLDAVFV 172 (499)
T ss_pred eeCCCCChHHHHhhHHHHHHHHHhCCCCCCEEEE
Confidence 78889764332221111112233344 4676665
No 477
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=42.16 E-value=32 Score=27.42 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHCCCEEEEEecC
Q 021383 71 GHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 71 G~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
++.-..+|+++.++|++|+++...
T Consensus 4 ~~~~~~l~~~L~~~G~~V~v~~~~ 27 (160)
T PF13579_consen 4 ERYVRELARALAARGHEVTVVTPQ 27 (160)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEE-
T ss_pred HHHHHHHHHHHHHCCCEEEEEecC
Confidence 567789999999999999999864
No 478
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=42.11 E-value=21 Score=37.62 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=24.2
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.|..+|.++||||..+|++|.++.-..
T Consensus 307 ~s~ytgiTiAEYfRd~G~~Vllm~DSt 333 (586)
T PRK04192 307 ASIYTGITIAEYYRDMGYDVLLMADST 333 (586)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEecCh
Confidence 478899999999999999999998654
No 479
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=42.09 E-value=52 Score=24.09 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=23.4
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
+|--|.+.|-++.++|++|+++-+...
T Consensus 4 aG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 4 AGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp -SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred eCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 588899999999999999999997644
No 480
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=42.08 E-value=23 Score=35.22 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=23.1
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
+..+|.++||+|..+|++|.++.-..
T Consensus 238 s~yta~tiAEYfrd~G~dVll~~Ds~ 263 (369)
T cd01134 238 SIYTGITIAEYFRDMGYNVALMADST 263 (369)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 57789999999999999999998653
No 481
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=41.85 E-value=49 Score=33.14 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=24.9
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecCCCC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRRGTC 97 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~~s~ 97 (313)
.|-.|..+|..|...|.+|++|++...+
T Consensus 174 gG~iG~E~A~~l~~~g~~Vtli~~~~~i 201 (450)
T TIGR01421 174 AGYIAVELAGVLHGLGSETHLVIRHERV 201 (450)
T ss_pred CCHHHHHHHHHHHHcCCcEEEEecCCCC
Confidence 7889999999999999999999976543
No 482
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=41.72 E-value=21 Score=28.38 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=19.6
Q ss_pred CeeeeccCCccHHHHHHHHHHHHCCCEE
Q 021383 61 CVRYIDNFSSGHRGAASTEHLIKMGYAV 88 (313)
Q Consensus 61 ~VR~ItN~SSG~~G~~lAe~~~~~Ga~V 88 (313)
+|+|+||. |++.-..+++.|...|..|
T Consensus 32 ~~~~lTNn-s~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 32 PVVFLTNN-SSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp EEEEEES--SSS-HHHHHHHHHHTTTT-
T ss_pred CEEEEeCC-CCCCHHHHHHHHHhcCcCC
Confidence 78899995 5566788888888899764
No 483
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=41.68 E-value=46 Score=32.07 Aligned_cols=26 Identities=4% Similarity=0.135 Sum_probs=23.7
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+|-+|.++|-++..+|+.++++...
T Consensus 76 s~GN~g~alA~aa~~~G~~~~iv~~~ 101 (337)
T PRK12390 76 VQSNHTRQVAAVAAHLGMKCVLVQEN 101 (337)
T ss_pred CccHHHHHHHHHHHHcCCeEEEEeCC
Confidence 68999999999999999999999743
No 484
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=41.65 E-value=33 Score=34.36 Aligned_cols=34 Identities=18% Similarity=0.329 Sum_probs=30.2
Q ss_pred eeeccCCccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 63 RYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 63 R~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
|.|.-.|+|..|.++|-++...|.+++++.+...
T Consensus 108 ~vIaetgaGnhG~A~A~~aa~~Gl~c~I~mp~~d 141 (397)
T PRK04346 108 RIIAETGAGQHGVATATAAALLGLECVIYMGAED 141 (397)
T ss_pred eEEEecCcHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence 5677678999999999999999999999998753
No 485
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=41.10 E-value=34 Score=36.44 Aligned_cols=49 Identities=12% Similarity=-0.003 Sum_probs=42.1
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
++++||+|+-. +|..=.|.|..+=..+-.+|+++..+|++|.|++|...
T Consensus 2 ~~~~itt~~py----~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~ 50 (673)
T PRK00133 2 RKILVTCALPY----ANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDA 50 (673)
T ss_pred CCEEEeCCCCC----CCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCC
Confidence 57899999754 44677899999889999999999999999999999643
No 486
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=40.91 E-value=96 Score=30.89 Aligned_cols=55 Identities=18% Similarity=0.129 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 18 PLNDRAAISQKLKEFIALNSSESGTRRVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 18 ~~~~~~~I~~~v~~~l~~~~~l~~~~k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
.|..|..|.+.++.+ +.++.| |+|+|-+. |..-|.-+|..|+++||.||..|..+
T Consensus 211 ~PCTp~avielL~~y---~i~l~G--K~vvVIGR------------------S~iVGkPLa~LL~~~~ATVTicHs~T 265 (364)
T PLN02616 211 VPCTPKGCIELLHRY---NVEIKG--KRAVVIGR------------------SNIVGMPAALLLQREDATVSIVHSRT 265 (364)
T ss_pred CCCCHHHHHHHHHHh---CCCCCC--CEEEEECC------------------CccccHHHHHHHHHCCCeEEEeCCCC
Confidence 467788877655543 235767 88888654 55669999999999999999999753
No 487
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=40.90 E-value=31 Score=32.90 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=22.3
Q ss_pred cHHHHHHHHHHHHCCCEEEEEecC
Q 021383 71 GHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 71 G~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|-+|.++|-+|.++|++|++|-+.
T Consensus 12 Gi~G~s~A~~L~~~g~~V~lie~~ 35 (376)
T PRK11259 12 GSMGSAAGYYLARRGLRVLGLDRF 35 (376)
T ss_pred CHHHHHHHHHHHHCCCeEEEEecc
Confidence 889999999999999999999864
No 488
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=40.58 E-value=32 Score=32.50 Aligned_cols=25 Identities=24% Similarity=0.209 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.|.||..+|..+++.|++|++..+.
T Consensus 8 lG~mG~~la~~L~~~g~~V~~~dr~ 32 (298)
T TIGR00872 8 LGRMGANIVRRLAKRGHDCVGYDHD 32 (298)
T ss_pred chHHHHHHHHHHHHCCCEEEEEECC
Confidence 6999999999999999999876543
No 489
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=40.55 E-value=43 Score=34.66 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=34.6
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
+.|+|.+-+..-|+. |+ -+..+|.++||+|...|.+|.++.-.
T Consensus 220 ~tvvv~atsd~p~~~----r~----~a~~~a~tiAEyfrd~G~~VLli~Dd 262 (502)
T PRK09281 220 YTIVVAATASDPAPL----QY----LAPYAGCAMGEYFMDNGKDALIVYDD 262 (502)
T ss_pred ceEEEEeCCCCCHHH----HH----HHHHHHHHHHHHHHHcCCCEEEEecC
Confidence 678887776666665 44 35788999999999999999999865
No 490
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=40.30 E-value=49 Score=33.18 Aligned_cols=25 Identities=32% Similarity=0.571 Sum_probs=21.7
Q ss_pred cHHHHHHHHHHHHCCCEEEEEecCC
Q 021383 71 GHRGAASTEHLIKMGYAVIFLYRRG 95 (313)
Q Consensus 71 G~~G~~lAe~~~~~Ga~V~~i~g~~ 95 (313)
|-.|...|..+.+.|++|+++++..
T Consensus 281 G~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 281 GNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CHHHHHHHHHHHHcCCEEEEEeecC
Confidence 4568889999999999999999864
No 491
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=40.28 E-value=56 Score=30.36 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.2
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEec
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYR 93 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g 93 (313)
+|.+|.++|.+++..|+.|+++.+
T Consensus 125 aGg~g~aia~~L~~~g~~v~v~~R 148 (270)
T TIGR00507 125 AGGAARAVALPLLKADCNVIIANR 148 (270)
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeC
Confidence 488999999999999998887765
No 492
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=40.24 E-value=78 Score=27.44 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=26.9
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEe
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~ 92 (313)
++|+|=+|+. -.|--|..+|+++..+|+.|+++.
T Consensus 26 ~~v~il~G~G---------------nNGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 26 PRVLILCGPG---------------NNGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp -EEEEEE-SS---------------HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEEECCC---------------CChHHHHHHHHHHHHCCCeEEEEE
Confidence 7788877754 367889999999999999999844
No 493
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=40.24 E-value=84 Score=31.43 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=25.9
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecCCCCCC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRRGTCEP 99 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~~s~~P 99 (313)
.|-.|..+|..|.++|.+|+++.+...+.|
T Consensus 178 gG~iG~E~A~~l~~~g~~Vtli~~~~~ll~ 207 (458)
T PRK06912 178 GGVIGCEFASIYSRLGTKVTIVEMAPQLLP 207 (458)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence 789999999999999999999997655444
No 494
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=39.95 E-value=30 Score=35.34 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=22.8
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.|.||..+|+.++++|++|+...+.
T Consensus 7 LG~MG~~mA~nL~~~G~~V~v~drt 31 (467)
T TIGR00873 7 LAVMGSNLALNMADHGFTVSVYNRT 31 (467)
T ss_pred eHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 6999999999999999999988764
No 495
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=39.84 E-value=59 Score=31.43 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=24.0
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecCCCC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRRGTC 97 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~~s~ 97 (313)
.|-.|..+|..+.++|.+|+++++...+
T Consensus 149 gG~~g~e~A~~L~~~g~~Vtlv~~~~~~ 176 (377)
T PRK04965 149 GGLIGTELAMDLCRAGKAVTLVDNAASL 176 (377)
T ss_pred CCHHHHHHHHHHHhcCCeEEEEecCCcc
Confidence 4678999999999999999999976543
No 496
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=39.69 E-value=27 Score=33.30 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=28.4
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHCCCEEEEEe
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKMGYAVIFLY 92 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~Ga~V~~i~ 92 (313)
++|+|++|||-..|= ++.+|+++.++|+++.++.
T Consensus 2 ~ki~i~~Ggt~G~i~---------------~a~l~~~L~~~~~~~~~~~ 35 (380)
T PRK00025 2 LRIAIVAGEVSGDLL---------------GAGLIRALKARAPNLEFVG 35 (380)
T ss_pred ceEEEEecCcCHHHH---------------HHHHHHHHHhcCCCcEEEE
Confidence 689999999988886 5569999998887777776
No 497
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=39.68 E-value=85 Score=28.05 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=25.2
Q ss_pred ceEEEecCCcccccCCCCeeeeccCCccHHHHHHHHHHHHC-CCEEEEEecC
Q 021383 44 RVACVTSGGTTVPLEQRCVRYIDNFSSGHRGAASTEHLIKM-GYAVIFLYRR 94 (313)
Q Consensus 44 k~VLITsGgT~epID~~~VR~ItN~SSG~~G~~lAe~~~~~-Ga~V~~i~g~ 94 (313)
+.+|||+|. =||| +.-||.++.. |..|+||...
T Consensus 1 ~~ilvtGga----------------RSGK--S~~AE~la~~~~~~v~YvAT~ 34 (175)
T COG2087 1 MMILVTGGA----------------RSGK--SSFAEALAGESGGQVLYVATG 34 (175)
T ss_pred CeEEEecCc----------------cCCc--hHHHHHHHHhhCCceEEEEec
Confidence 458899882 3787 5678888864 9999999964
No 498
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=39.57 E-value=35 Score=32.43 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 70 SGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 70 SG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
.|.+|..+|-.|.+.|++|+++.+.
T Consensus 13 ~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 13 TGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 5899999999999999999999985
No 499
>PRK06475 salicylate hydroxylase; Provisional
Probab=39.44 E-value=53 Score=31.99 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.2
Q ss_pred cHHHHHHHHHHHHCCCEEEEEecCCC
Q 021383 71 GHRGAASTEHLIKMGYAVIFLYRRGT 96 (313)
Q Consensus 71 G~~G~~lAe~~~~~Ga~V~~i~g~~s 96 (313)
|--|.++|-.|.++|++|+++-....
T Consensus 11 GiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 11 GVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 45599999999999999999997643
No 500
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=39.43 E-value=51 Score=31.79 Aligned_cols=26 Identities=4% Similarity=0.137 Sum_probs=23.9
Q ss_pred CccHHHHHHHHHHHHCCCEEEEEecC
Q 021383 69 SSGHRGAASTEHLIKMGYAVIFLYRR 94 (313)
Q Consensus 69 SSG~~G~~lAe~~~~~Ga~V~~i~g~ 94 (313)
|+|-.|.++|-++.+.|..++++..+
T Consensus 75 s~gN~g~alA~~a~~~Gl~~~iv~~~ 100 (337)
T TIGR01274 75 IQSNQTRQVAAVAAHLGMKCVLVQEN 100 (337)
T ss_pred CcchHHHHHHHHHHHcCCcEEEEecc
Confidence 77999999999999999999988865
Done!