Query 021384
Match_columns 313
No_of_seqs 150 out of 538
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 03:21:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vjl_A Hypothetical protein TM 100.0 1E-40 3.4E-45 292.3 15.4 137 120-259 12-154 (164)
2 3jtp_A Adapter protein MECA 1; 21.5 1.2E+02 0.004 23.5 4.5 62 191-261 25-86 (98)
3 2e5i_A Heterogeneous nuclear r 19.9 1.3E+02 0.0043 24.2 4.5 38 176-216 34-71 (124)
4 3zzy_A Polypyrimidine tract-bi 19.4 1.7E+02 0.0059 23.8 5.3 39 176-216 37-75 (130)
5 3pxi_a Adapter protein MECA 1; 18.4 1.3E+02 0.0045 23.8 4.3 57 196-261 43-99 (111)
6 4exr_A Putative lipoprotein; Y 14.5 5.5E+02 0.019 21.6 8.4 48 181-230 117-164 (174)
7 2pt7_G HP1451, hypothetical pr 14.2 2E+02 0.0068 24.3 4.6 35 180-214 7-41 (152)
8 3oov_A Methyl-accepting chemot 10.2 4.6E+02 0.016 19.3 5.2 69 180-248 21-90 (169)
9 1uxc_A FRUR (1-57), fructose r 10.2 2E+02 0.0068 20.5 2.9 32 166-197 17-51 (65)
10 1ib8_A Conserved protein SP14. 9.7 2.8E+02 0.0095 23.4 4.1 38 179-218 13-50 (164)
No 1
>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A
Probab=100.00 E-value=1e-40 Score=292.33 Aligned_cols=137 Identities=24% Similarity=0.363 Sum_probs=124.1
Q ss_pred eeEEeecCCCCccCCCCCCCcEEEEEeeCCCceEEEEEEcchhHHHHHHHHcccCCCCCchHHHHHHHHHHhCCEEeEEE
Q 021384 120 HLRCVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVR 199 (313)
Q Consensus 120 ~l~~~~~~~~~gaLd~~a~~PvIVLk~edg~~r~LPI~IgeaEAiaI~~aL~g~~~~RPlTHDLl~eiLe~LG~~V~~V~ 199 (313)
++|...+ +++++|+++++|+|||++++++ +.|||||+..||.+|+.+++|.+++||+|||||.++++++|+++++|+
T Consensus 12 ~~~~~~v--~gi~ld~~~~~pvvvL~~~~g~-r~LPI~Ig~~EA~aI~~~l~~~~~~RPlThDLl~~il~~lg~~v~~V~ 88 (164)
T 1vjl_A 12 HMRKAWV--KTLALDRVSNTPVVILGIEGTN-RVLPIWIGACEGHALALAMEKMEFPRPLTHDLLLSVLESLEARVDKVI 88 (164)
T ss_dssp CEEEEEE--EEEEECTTTCCEEEEEEETTSS-EEEEEECCHHHHHHHHHHHHTCCCSSCCHHHHHHHHHHHTTEEEEEEE
T ss_pred ceeEEEE--EEEEEcCCCCceEEEEEecCCC-EEEEEEECHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCEEEEEE
Confidence 4455555 6899999999999999998876 799999999999999999999999999999999999999999999999
Q ss_pred EEeEECCEEEEEEEEE------ecCceeeEEEEeCChHHHHHHHHHcCCCEEEehhHHhccCcccc
Q 021384 200 VTKRVHEAYFAQLYLT------KVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVI 259 (313)
Q Consensus 200 It~~~dGtFyArL~L~------k~g~e~e~v~IDARPSDAIALALR~kaPIyV~eeVl~~agI~v~ 259 (313)
|+++++|||||+|+|+ +++++.+.+++|+|||||||||+|+|+||||+|+|++++|+.+.
T Consensus 89 I~~l~dgtfyA~L~l~~~~~~~~~~~~~~~~~iDaRPSDAIaLAlR~~~PI~V~e~Vl~~a~i~~~ 154 (164)
T 1vjl_A 89 IHSLKDNTFYATLVIRDLTYTDEEDEEAALIDIDSRPSDAIILAVKTGAPIFVSDNLVEKHSIELE 154 (164)
T ss_dssp EEEEETTEEEEEEEEEECC--------CCEEEEEECHHHHHHHHHHHTCCEEEEHHHHHHHCEECC
T ss_pred EEEeECCEEEEEEEEeccccccCCCCcceEEEEECcHHHHHHHHHHHCCCEEEcHHHHhhcCCCCc
Confidence 9999999999999999 66533357899999999999999999999999999999999876
No 2
>3jtp_A Adapter protein MECA 1; MECA;adaptor protein;degradation TAG, competence, sporulation, protein binding; 2.17A {Bacillus subtilis} PDB: 2y1r_I* 3pxg_a
Probab=21.53 E-value=1.2e+02 Score=23.47 Aligned_cols=62 Identities=8% Similarity=0.074 Sum_probs=46.7
Q ss_pred hCCEEeEEEEEeEECCEEEEEEEEEecCceeeEEEEeCChHHHHHHHHHcCCCEEEehhHHhccCcccccc
Q 021384 191 MGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIES 261 (313)
Q Consensus 191 LG~~V~~V~It~~~dGtFyArL~L~k~g~e~e~v~IDARPSDAIALALR~kaPIyV~eeVl~~agI~v~E~ 261 (313)
++.....=..+.. +|.||=.|.+... -+....+.++++..++-|-.+++..+.+.|--+++.
T Consensus 25 ~~~~~~~s~LYk~-~~~YYL~l~~~~~--------~~~~~~~~~a~l~EYg~~s~~t~~~L~EhGk~Ii~~ 86 (98)
T 3jtp_A 25 LNVNGSKTTLYSF-ENRYYLYVDFCDM--------TDEEVENQLSIMLEYANESSISIHRLEEYGKLIISE 86 (98)
T ss_dssp TTCCCSEEEEEEE-TTEEEEEEECCSC--------CTTHHHHHHHHHHHHCEECCCCHHHHHHHSEEEECS
T ss_pred CCCCCCCceeEEE-CCEEEEEEEeCCC--------CHHHHHHHHHHHHHhCCCCcccHHHHHhhChhhchh
Confidence 3333444555654 8999988887532 145678999999999999999999999988887754
No 3
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=19.86 E-value=1.3e+02 Score=24.17 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=28.7
Q ss_pred CCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEe
Q 021384 176 ARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTK 216 (313)
Q Consensus 176 ~RPlTHDLl~eiLe~LG~~V~~V~It~~~dGtFyArL~L~k 216 (313)
+.+.|.|.|.+++...|- |.+|.|... .| |+|-|.+..
T Consensus 34 ~~~vt~~~L~~~Fs~yG~-V~~v~i~~~-~G-f~aFVef~~ 71 (124)
T 2e5i_A 34 LYPITVDVLYTVCNPVGK-VQRIVIFKR-NG-IQAMVEFES 71 (124)
T ss_dssp CSCCCHHHHHHHHTTTSC-EEEEEEEES-SS-EEEEEEESS
T ss_pred CCCCCHHHHHHHHHhcCC-EEEEEEEeC-CC-CEEEEEECC
Confidence 357888999999999985 888888653 34 567777743
No 4
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=19.36 E-value=1.7e+02 Score=23.79 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=30.6
Q ss_pred CCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEe
Q 021384 176 ARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTK 216 (313)
Q Consensus 176 ~RPlTHDLl~eiLe~LG~~V~~V~It~~~dGtFyArL~L~k 216 (313)
+.+.|.|.|.+++.+.|- |.+|+|.. +..-|+|-+.+..
T Consensus 37 ~~~vte~~L~~lFs~yG~-V~~V~i~~-~~~gfqAFVef~~ 75 (130)
T 3zzy_A 37 FYPVTLDVLHQIFSKFGT-VLKIITFT-KNNQFQALLQYAD 75 (130)
T ss_dssp CSCCCHHHHHHHHTTSSC-EEEEEEEE-ETTEEEEEEEESC
T ss_pred CCCCCHHHHHHHHhCcCC-EEEEEEEc-CCCCcEEEEEECC
Confidence 458899999999999985 88888865 3456778777754
No 5
>3pxi_a Adapter protein MECA 1; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=18.41 E-value=1.3e+02 Score=23.85 Aligned_cols=57 Identities=9% Similarity=0.100 Sum_probs=44.5
Q ss_pred eEEEEEeEECCEEEEEEEEEecCceeeEEEEeCChHHHHHHHHHcCCCEEEehhHHhccCcccccc
Q 021384 196 RLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIES 261 (313)
Q Consensus 196 ~~V~It~~~dGtFyArL~L~k~g~e~e~v~IDARPSDAIALALR~kaPIyV~eeVl~~agI~v~E~ 261 (313)
..-..+.. +|.||=.|.+.... +....+.++++..++-|-.+++..+.+.|--+++.
T Consensus 43 ~~s~LYk~-~~~YYL~l~~~~~~--------~~~~~~~~ail~EYG~~s~~t~a~L~EhGk~Ii~~ 99 (111)
T 3pxi_a 43 SKTTLYSF-ENRYYLYVDFCNMT--------DEEVENQLSILLEYATESSISIHRLEEYGKLIISE 99 (111)
T ss_dssp EEEEEEEE-TTEEEEEEEECSCC--------HHHHHHHHHHHHHHCEECCCCHHHHHHHSCEEECS
T ss_pred CCceeEEE-CCEEEEEEeeCCCC--------HHHHHHHHHHHHHhCCCCcchHHHHHhhChhhchh
Confidence 34445554 89999988875321 44678999999999999999999999988887754
No 6
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=14.46 E-value=5.5e+02 Score=21.65 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEecCceeeEEEEeCCh
Q 021384 181 YQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRP 230 (313)
Q Consensus 181 HDLl~eiLe~LG~~V~~V~It~~~dGtFyArL~L~k~g~e~e~v~IDARP 230 (313)
-+.+.-.+++.+.+|..+.+.. .+|.++=.+.+..++.+ ..+.|||.-
T Consensus 117 ~~A~~~Al~~~~G~v~e~eLd~-d~G~~vYevei~~~~~~-~ev~IDA~t 164 (174)
T 4exr_A 117 QQAMEIALKEQNGIVKEWSLDK-DLDVTFYKIRIDKDKNE-YDIKVDSKK 164 (174)
T ss_dssp HHHHHHHHHHSCSEEEEEEEEE-ETTEEEEEEEEEETTEE-EEEEEETTT
T ss_pred HHHHHHHHHhCCCeEEEEEEEE-eCCEEEEEEEEEECCEE-EEEEEECCC
Confidence 3555566677788999999864 78988888888776643 578899864
No 7
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=14.24 E-value=2e+02 Score=24.34 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEE
Q 021384 180 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYL 214 (313)
Q Consensus 180 THDLl~eiLe~LG~~V~~V~It~~~dGtFyArL~L 214 (313)
..+.|.++++.||.+++.+.+....+++++-.|.=
T Consensus 7 ~~~~L~~il~~m~~~~~~i~v~~~~~~~i~i~i~g 41 (152)
T 2pt7_G 7 IKQELKDLFSHLPYKINKVEVSLYEPGVLLIDIDG 41 (152)
T ss_dssp HHHHHHHHTTTTTCCEEEEEEEEEETTEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCceEEEEEEecCCEEEEEEec
Confidence 46789999999999887788877788888776653
No 8
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=10.24 E-value=4.6e+02 Score=19.29 Aligned_cols=69 Identities=10% Similarity=0.096 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEecCceeeEEEEeCCh-HHHHHHHHHcCCCEEEeh
Q 021384 180 LYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRP-SDAINIAVRCKVPIQVNK 248 (313)
Q Consensus 180 THDLl~eiLe~LG~~V~~V~It~~~dGtFyArL~L~k~g~e~e~v~IDARP-SDAIALALR~kaPIyV~e 248 (313)
-..++..+.+.+|+.--.+.+.+-..+.+.................+...+ ...+.-+++.+-|+++++
T Consensus 21 l~~~~~~~~~~~~~~~~~i~l~d~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d 90 (169)
T 3oov_A 21 LRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPAGVVLPLDQRGGVITKCFTDRQVYMIDD 90 (169)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCTTCEEESSGGGHHHHHHHHHTCCEEESC
T ss_pred HHHHHHHHHHhhCCceEEEEEEeCCCCeEEEEEEeCchhhhhhcccCCcccccchHHHHHhcCCCEEecc
Confidence 344444555555654444444443345665444443221111234455543 456677889999999974
No 9
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=10.24 E-value=2e+02 Score=20.48 Aligned_cols=32 Identities=6% Similarity=0.044 Sum_probs=26.2
Q ss_pred HHHHHcccC---CCCCchHHHHHHHHHHhCCEEeE
Q 021384 166 LMAAMRNVQ---IARPTLYQVVKEMIEKMGYEVRL 197 (313)
Q Consensus 166 I~~aL~g~~---~~RPlTHDLl~eiLe~LG~~V~~ 197 (313)
+...++|.. ...|.|-+-+.++++.+||....
T Consensus 17 VSrvLng~~~~~~vs~et~~rI~~aa~~lgY~pn~ 51 (65)
T 1uxc_A 17 ASYVINGKAKQYRVSDKTVEKVMAVVREHNYHPNA 51 (65)
T ss_dssp HHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCCCC-
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHhCCCccH
Confidence 567788876 67899999999999999997654
No 10
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=9.71 E-value=2.8e+02 Score=23.36 Aligned_cols=38 Identities=18% Similarity=0.315 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEecC
Q 021384 179 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVG 218 (313)
Q Consensus 179 lTHDLl~eiLe~LG~~V~~V~It~~~dGtFyArL~L~k~g 218 (313)
-..+|+..+++. |+.+..|++.. ..+-.+=++++.+++
T Consensus 13 ~v~~li~p~~~~-g~eLvdve~~~-~g~~~~LrV~ID~~~ 50 (164)
T 1ib8_A 13 LVREVVEPVIEA-PFELVDIEYGK-IGSDMILSIFVDKPE 50 (164)
T ss_dssp HHHHHHHHHHCS-SSEEEEEEEEE-ETTEEEEEEEEECSS
T ss_pred HHHHHHHHHHcC-CcEEEEEEEEe-cCCCcEEEEEEECCC
Confidence 356788888988 99999999875 567788899998775
Done!