Query 021385
Match_columns 313
No_of_seqs 192 out of 1729
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 03:22:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z2q_A LM5-1; membrane protein 82.8 1.4 4.9E-05 31.4 4.2 26 123-148 20-47 (84)
2 2ayj_A 50S ribosomal protein L 80.4 1.1 3.7E-05 29.5 2.4 31 120-150 15-45 (56)
3 1x4u_A Zinc finger, FYVE domai 78.2 1 3.5E-05 32.2 2.1 24 124-147 14-39 (84)
4 1wfk_A Zinc finger, FYVE domai 78.0 1.1 3.8E-05 32.4 2.2 26 122-147 7-34 (88)
5 3j21_g 50S ribosomal protein L 77.1 1.4 4.8E-05 28.5 2.2 30 121-150 11-40 (51)
6 2yw8_A RUN and FYVE domain-con 75.7 1.3 4.5E-05 31.5 2.0 26 123-148 18-45 (82)
7 2dkt_A Ring finger and CHY zin 75.6 1.5 5.2E-05 34.7 2.5 46 118-163 77-126 (143)
8 1joc_A EEA1, early endosomal a 72.6 1.5 5.1E-05 34.0 1.8 25 124-148 69-95 (125)
9 1vfy_A Phosphatidylinositol-3- 72.6 1.4 4.7E-05 30.7 1.4 24 125-148 12-37 (73)
10 1dvp_A HRS, hepatocyte growth 68.2 1.9 6.6E-05 36.6 1.7 25 124-148 161-187 (220)
11 1y02_A CARP2, FYVE-ring finger 65.2 1.9 6.3E-05 33.2 0.8 23 125-147 20-44 (120)
12 3t7l_A Zinc finger FYVE domain 64.0 3 0.0001 30.2 1.8 26 123-148 19-46 (90)
13 3zyq_A Hepatocyte growth facto 61.4 2.8 9.6E-05 35.8 1.4 24 125-148 165-190 (226)
14 2c6a_A Ubiquitin-protein ligas 46.6 7.3 0.00025 24.4 1.1 24 123-146 12-35 (46)
15 2cr8_A MDM4 protein; ZF-ranbp 46.4 17 0.0006 23.2 2.9 24 123-146 10-33 (53)
16 2vrw_B P95VAV, VAV1, proto-onc 40.8 9.3 0.00032 35.2 1.4 29 122-150 355-386 (406)
17 1wfl_A Zinc finger protein 216 38.6 29 0.00098 24.1 3.3 36 124-160 25-65 (74)
18 3j20_Y 30S ribosomal protein S 36.5 13 0.00044 23.7 1.2 24 122-145 17-44 (50)
19 3mpx_A FYVE, rhogef and PH dom 35.7 7.7 0.00026 36.0 0.0 25 123-147 374-400 (434)
20 3u5e_m 60S ribosomal protein L 34.4 16 0.00053 27.9 1.6 25 123-147 92-118 (128)
21 3arc_T Photosystem II reaction 28.7 86 0.0029 17.9 4.1 16 69-84 16-31 (32)
22 2k1p_A Zinc finger RAN-binding 25.2 58 0.002 18.5 2.6 21 125-145 7-27 (33)
23 1wfh_A Zinc finger (AN1-like) 22.9 78 0.0027 21.2 3.2 37 123-160 14-55 (64)
24 1wil_A KIAA1045 protein; ring 22.5 58 0.002 23.2 2.6 27 123-149 14-40 (89)
25 1wg2_A Zinc finger (AN1-like) 21.9 74 0.0025 21.3 2.9 37 123-160 14-55 (64)
26 2elu_A Zinc finger protein 406 21.9 19 0.00066 20.6 0.0 8 139-146 10-17 (37)
27 2jrp_A Putative cytoplasmic pr 21.9 23 0.00077 25.1 0.4 22 124-146 18-39 (81)
28 2apo_B Ribosome biogenesis pro 21.3 47 0.0016 22.0 1.8 22 123-146 5-26 (60)
29 3qt1_I DNA-directed RNA polyme 20.5 48 0.0017 25.6 2.1 27 120-146 20-54 (133)
30 2pg3_A Queuosine biosynthesis 20.5 23 0.00078 29.7 0.2 17 134-150 191-207 (232)
No 1
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=82.75 E-value=1.4 Score=31.43 Aligned_cols=26 Identities=27% Similarity=0.607 Sum_probs=19.2
Q ss_pred Ceeeccccccc--cCCCCccCcccCccc
Q 021385 123 SVGFCDRCQNG--KPPRCHHCSVCQRCV 148 (313)
Q Consensus 123 ~~~~C~~C~~~--kP~RshHC~~C~~CV 148 (313)
+...|..|+.. --.|-|||+.||+-+
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 47 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVL 47 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEE
Confidence 45678888854 346889999998743
No 2
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=80.42 E-value=1.1 Score=29.46 Aligned_cols=31 Identities=23% Similarity=0.505 Sum_probs=25.8
Q ss_pred CCCCeeeccccccccCCCCccCcccCccccc
Q 021385 120 PSRSVGFCDRCQNGKPPRCHHCSVCQRCVLK 150 (313)
Q Consensus 120 ~~~~~~~C~~C~~~kP~RshHC~~C~~CV~~ 150 (313)
.......|.+|...-|+|+..|+.||..-+|
T Consensus 15 ~~~~k~ICrkC~ARnp~~A~~CRKCg~~~LR 45 (56)
T 2ayj_A 15 RVFLKKVCRKCGALNPIRATKCRRCHSTNLR 45 (56)
T ss_dssp CSCCCEEETTTCCEECTTCSSCTTTCCCCEE
T ss_pred HHhchhhhccccCcCCcccccccCCCCCCCC
Confidence 4456789999999999999999999865443
No 3
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.21 E-value=1 Score=32.21 Aligned_cols=24 Identities=25% Similarity=0.599 Sum_probs=17.8
Q ss_pred eeeccccccc--cCCCCccCcccCcc
Q 021385 124 VGFCDRCQNG--KPPRCHHCSVCQRC 147 (313)
Q Consensus 124 ~~~C~~C~~~--kP~RshHC~~C~~C 147 (313)
...|..|+.. --.|-|||+.||+-
T Consensus 14 ~~~C~~C~~~F~~~~RrHHCR~CG~v 39 (84)
T 1x4u_A 14 FGNCTGCSATFSVLKKRRSCSNCGNS 39 (84)
T ss_dssp CSSCSSSCCCCCSSSCCEECSSSCCE
T ss_pred CCcCcCcCCccccchhhhhhcCCCcE
Confidence 4567777753 45788999999874
No 4
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=77.97 E-value=1.1 Score=32.44 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=19.2
Q ss_pred CCeeeccccccc--cCCCCccCcccCcc
Q 021385 122 RSVGFCDRCQNG--KPPRCHHCSVCQRC 147 (313)
Q Consensus 122 ~~~~~C~~C~~~--kP~RshHC~~C~~C 147 (313)
.+...|..|+.. --.|-|||+.||+-
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~v 34 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRA 34 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCE
Confidence 345678888853 45788999999874
No 5
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=77.15 E-value=1.4 Score=28.45 Aligned_cols=30 Identities=23% Similarity=0.391 Sum_probs=25.1
Q ss_pred CCCeeeccccccccCCCCccCcccCccccc
Q 021385 121 SRSVGFCDRCQNGKPPRCHHCSVCQRCVLK 150 (313)
Q Consensus 121 ~~~~~~C~~C~~~kP~RshHC~~C~~CV~~ 150 (313)
......|..|...-|+++..|+.||.--++
T Consensus 11 ~~~k~iCpkC~a~~~~gaw~CrKCG~~~lr 40 (51)
T 3j21_g 11 IFKKYVCLRCGATNPWGAKKCRKCGYKRLR 40 (51)
T ss_dssp SSSEEECTTTCCEECTTCSSCSSSSSCCCE
T ss_pred HhCCccCCCCCCcCCCCceecCCCCCcccc
Confidence 345789999999999999999999875443
No 6
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=75.70 E-value=1.3 Score=31.51 Aligned_cols=26 Identities=27% Similarity=0.712 Sum_probs=18.9
Q ss_pred Ceeeccccccc--cCCCCccCcccCccc
Q 021385 123 SVGFCDRCQNG--KPPRCHHCSVCQRCV 148 (313)
Q Consensus 123 ~~~~C~~C~~~--kP~RshHC~~C~~CV 148 (313)
+...|..|+.. --.|-|||+.||+-+
T Consensus 18 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~ 45 (82)
T 2yw8_A 18 EATHCRQCEKEFSISRRKHHCRNCGHIF 45 (82)
T ss_dssp CCCBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred cCCcccCcCCcccCccccccCCCCCCEE
Confidence 34578888853 446889999998743
No 7
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=75.58 E-value=1.5 Score=34.69 Aligned_cols=46 Identities=20% Similarity=0.401 Sum_probs=30.3
Q ss_pred CCCCCCeeeccccccccCCC-CccCcccCccccc---ccccCcccccccc
Q 021385 118 RGPSRSVGFCDRCQNGKPPR-CHHCSVCQRCVLK---MDHHCVWVVNCVG 163 (313)
Q Consensus 118 ~~~~~~~~~C~~C~~~kP~R-shHC~~C~~CV~~---~DHHCpwi~nCIG 163 (313)
++......||.+|+.+.+++ .+||..||-|... -=-||.--|.|+.
T Consensus 77 Cg~~f~~Y~C~~C~l~d~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s 126 (143)
T 2dkt_A 77 CSTLFGEYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLT 126 (143)
T ss_dssp SCCBSCSEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEE
T ss_pred CCccceeeEeceeecccCCCceecCCCCCceeccCCcCcEECCcCCeeec
Confidence 45666778999999985544 5777777777653 2245655555543
No 8
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=72.64 E-value=1.5 Score=33.96 Aligned_cols=25 Identities=36% Similarity=0.744 Sum_probs=18.3
Q ss_pred eeeccccccc--cCCCCccCcccCccc
Q 021385 124 VGFCDRCQNG--KPPRCHHCSVCQRCV 148 (313)
Q Consensus 124 ~~~C~~C~~~--kP~RshHC~~C~~CV 148 (313)
...|..|+.. --.|-|||+.||+-+
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vf 95 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIF 95 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCCCcCcCCccccccccccCCCCCeEE
Confidence 4568888753 457899999998743
No 9
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=72.63 E-value=1.4 Score=30.66 Aligned_cols=24 Identities=29% Similarity=0.609 Sum_probs=17.7
Q ss_pred eeccccccc--cCCCCccCcccCccc
Q 021385 125 GFCDRCQNG--KPPRCHHCSVCQRCV 148 (313)
Q Consensus 125 ~~C~~C~~~--kP~RshHC~~C~~CV 148 (313)
..|..|+.. --.|-|||+.||+-+
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~ 37 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVF 37 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CcccCCCCccCCccccccCCCCCEEE
Confidence 368888853 446889999998743
No 10
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=68.16 E-value=1.9 Score=36.59 Aligned_cols=25 Identities=32% Similarity=0.712 Sum_probs=19.0
Q ss_pred eeeccccccc--cCCCCccCcccCccc
Q 021385 124 VGFCDRCQNG--KPPRCHHCSVCQRCV 148 (313)
Q Consensus 124 ~~~C~~C~~~--kP~RshHC~~C~~CV 148 (313)
...|..|+.. --.|-|||+.||+.+
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~ 187 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVF 187 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEE
Confidence 3689999853 346899999998754
No 11
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=65.17 E-value=1.9 Score=33.21 Aligned_cols=23 Identities=22% Similarity=0.589 Sum_probs=17.2
Q ss_pred eeccccccc--cCCCCccCcccCcc
Q 021385 125 GFCDRCQNG--KPPRCHHCSVCQRC 147 (313)
Q Consensus 125 ~~C~~C~~~--kP~RshHC~~C~~C 147 (313)
..|..|+.. -..|-|||+.||+.
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~i 44 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKN 44 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCE
T ss_pred CcccCcCCccccccccccCCCCCCe
Confidence 467777743 45688999999884
No 12
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=63.99 E-value=3 Score=30.18 Aligned_cols=26 Identities=31% Similarity=0.650 Sum_probs=18.3
Q ss_pred Ceeeccccccc--cCCCCccCcccCccc
Q 021385 123 SVGFCDRCQNG--KPPRCHHCSVCQRCV 148 (313)
Q Consensus 123 ~~~~C~~C~~~--kP~RshHC~~C~~CV 148 (313)
+...|..|+.. --.|-|||+.||+-+
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~ 46 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVF 46 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEE
Confidence 34568888743 345889999998743
No 13
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=61.45 E-value=2.8 Score=35.80 Aligned_cols=24 Identities=33% Similarity=0.750 Sum_probs=17.8
Q ss_pred eeccccccc--cCCCCccCcccCccc
Q 021385 125 GFCDRCQNG--KPPRCHHCSVCQRCV 148 (313)
Q Consensus 125 ~~C~~C~~~--kP~RshHC~~C~~CV 148 (313)
..|..|+.. ---|-|||+.||+.+
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~ 190 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIF 190 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEE
T ss_pred CCCcCcCCCCCccccccccCCCcCEe
Confidence 479999842 345789999998853
No 14
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=46.63 E-value=7.3 Score=24.38 Aligned_cols=24 Identities=29% Similarity=0.668 Sum_probs=19.6
Q ss_pred CeeeccccccccCCCCccCcccCc
Q 021385 123 SVGFCDRCQNGKPPRCHHCSVCQR 146 (313)
Q Consensus 123 ~~~~C~~C~~~kP~RshHC~~C~~ 146 (313)
..-.|.+|+..-||-..||..|-.
T Consensus 12 D~WkC~~C~~~N~Pl~r~C~rCw~ 35 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLPSHCNRCWA 35 (46)
T ss_dssp GCEECTTTCCEECSSCSSCTTTCC
T ss_pred ceEecccccccCCCccchhhHHHh
Confidence 456799999999999888888754
No 15
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=46.41 E-value=17 Score=23.16 Aligned_cols=24 Identities=21% Similarity=0.440 Sum_probs=19.2
Q ss_pred CeeeccccccccCCCCccCcccCc
Q 021385 123 SVGFCDRCQNGKPPRCHHCSVCQR 146 (313)
Q Consensus 123 ~~~~C~~C~~~kP~RshHC~~C~~ 146 (313)
+.-.|.+|+..-||-..||..|-.
T Consensus 10 D~WkC~~C~k~N~Pl~ryC~rCwa 33 (53)
T 2cr8_A 10 DEWQCTECKKFNSPSKRYCFRCWA 33 (53)
T ss_dssp CCEECSSSCCEECSSCCBCTTTCC
T ss_pred ceeecccccccCCCccchhHHHHH
Confidence 456799999998988888887744
No 16
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=40.80 E-value=9.3 Score=35.18 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=21.3
Q ss_pred CCeeecccccccc---CCCCccCcccCccccc
Q 021385 122 RSVGFCDRCQNGK---PPRCHHCSVCQRCVLK 150 (313)
Q Consensus 122 ~~~~~C~~C~~~k---P~RshHC~~C~~CV~~ 150 (313)
..+.+|..|+..- -.|-|||+.|+..|.+
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~ 386 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYRCRAPAHK 386 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETTTCCEECG
T ss_pred CCCCCCccccchhceeCCCCCCCCCCcCccch
Confidence 4678999999643 4688999999764443
No 17
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=38.64 E-value=29 Score=24.06 Aligned_cols=36 Identities=17% Similarity=0.391 Sum_probs=22.5
Q ss_pred eeeccccccccCCCCccCcccCccc-----ccccccCccccc
Q 021385 124 VGFCDRCQNGKPPRCHHCSVCQRCV-----LKMDHHCVWVVN 160 (313)
Q Consensus 124 ~~~C~~C~~~kP~RshHC~~C~~CV-----~~~DHHCpwi~n 160 (313)
...|..|+..-..=...|+ |+.=. +--||.|++--.
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk 65 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYK 65 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGG
T ss_pred CCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhh
Confidence 4579999865333348888 76522 223898987543
No 18
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.54 E-value=13 Score=23.70 Aligned_cols=24 Identities=33% Similarity=0.733 Sum_probs=14.6
Q ss_pred CCeeecccccccc---C-CCCccCcccC
Q 021385 122 RSVGFCDRCQNGK---P-PRCHHCSVCQ 145 (313)
Q Consensus 122 ~~~~~C~~C~~~k---P-~RshHC~~C~ 145 (313)
...++|+.|..-. + ...++|..|+
T Consensus 17 ~~~k~CP~CG~~~fm~~~~~R~~C~kCG 44 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMADHGDRWACGKCG 44 (50)
T ss_dssp CSSEECSSSCSSCEEEECSSEEECSSSC
T ss_pred EecccCCCCCCceEEecCCCeEECCCCC
Confidence 3578999998521 1 2245677665
No 19
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=35.71 E-value=7.7 Score=36.00 Aligned_cols=25 Identities=32% Similarity=0.701 Sum_probs=0.0
Q ss_pred Ceeeccccccc--cCCCCccCcccCcc
Q 021385 123 SVGFCDRCQNG--KPPRCHHCSVCQRC 147 (313)
Q Consensus 123 ~~~~C~~C~~~--kP~RshHC~~C~~C 147 (313)
...-|..|+.. --.|-|||+.||+.
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~ 400 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKI 400 (434)
T ss_dssp ---------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCE
Confidence 34568888743 33578999999984
No 20
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=34.44 E-value=16 Score=27.92 Aligned_cols=25 Identities=28% Similarity=0.814 Sum_probs=21.6
Q ss_pred CeeeccccccccCCCCccCcc--cCcc
Q 021385 123 SVGFCDRCQNGKPPRCHHCSV--CQRC 147 (313)
Q Consensus 123 ~~~~C~~C~~~kP~RshHC~~--C~~C 147 (313)
....|.+|...-|+|+..|+. ||..
T Consensus 92 ~~~ic~~~~~~~~~~~~~~~~~~c~~~ 118 (128)
T 3u5e_m 92 DKSVCRKCYARLPPRATNCRKRKCGHT 118 (128)
T ss_dssp SCEEETTTCCEECTTCSSCSCTTTTSC
T ss_pred ceEeeccccccCCchhhccchhhCCCc
Confidence 457999999999999999994 8764
No 21
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=28.72 E-value=86 Score=17.89 Aligned_cols=16 Identities=13% Similarity=0.470 Sum_probs=11.8
Q ss_pred HHHHHHhhcCCCCCCC
Q 021385 69 WSYVMVVFWDPGSVPE 84 (313)
Q Consensus 69 ~sy~~~~~~dPG~vp~ 84 (313)
..++...+.||-.+++
T Consensus 16 iiFFAI~FRePPri~~ 31 (32)
T 3arc_T 16 LFFFAIFFREPPRITK 31 (32)
T ss_dssp HHHHHHHTSCCCCCC-
T ss_pred HHHHhhhhcCCCCCCC
Confidence 3467888999988775
No 22
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=25.17 E-value=58 Score=18.53 Aligned_cols=21 Identities=29% Similarity=0.673 Sum_probs=10.7
Q ss_pred eeccccccccCCCCccCcccC
Q 021385 125 GFCDRCQNGKPPRCHHCSVCQ 145 (313)
Q Consensus 125 ~~C~~C~~~kP~RshHC~~C~ 145 (313)
-.|..|...-=.|-..|..|+
T Consensus 7 W~C~~C~~~Nfa~R~~C~~C~ 27 (33)
T 2k1p_A 7 WQCKTCSNVNWARRSECNMCN 27 (33)
T ss_dssp CBCSSSCCBCCTTCSBCSSSC
T ss_pred cccCCCCCccccccccccccC
Confidence 345555555555555554444
No 23
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.93 E-value=78 Score=21.18 Aligned_cols=37 Identities=19% Similarity=0.467 Sum_probs=23.0
Q ss_pred CeeeccccccccCCCCccCcccCc--cc-cc--ccccCccccc
Q 021385 123 SVGFCDRCQNGKPPRCHHCSVCQR--CV-LK--MDHHCVWVVN 160 (313)
Q Consensus 123 ~~~~C~~C~~~kP~RshHC~~C~~--CV-~~--~DHHCpwi~n 160 (313)
....|..|+..-..=...|+ |+. |- .| -||.|++--.
T Consensus 14 ~~~rC~~C~kkvgl~~f~Cr-Cg~~FC~~HRy~e~H~C~fDyk 55 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLTGFMCR-CGTTFCGSHRYPEVHGCTFDFK 55 (64)
T ss_dssp SCCCCTTTCCCCCTTCEECS-SSCEECTTTCSTTTTTCCCCCS
T ss_pred cCCcChhhCCccCccCEEee-cCCEeccccCCcccCCCCchhh
Confidence 45678889875443368884 765 22 23 3888986543
No 24
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=22.53 E-value=58 Score=23.16 Aligned_cols=27 Identities=26% Similarity=0.570 Sum_probs=22.4
Q ss_pred CeeeccccccccCCCCccCcccCcccc
Q 021385 123 SVGFCDRCQNGKPPRCHHCSVCQRCVL 149 (313)
Q Consensus 123 ~~~~C~~C~~~kP~RshHC~~C~~CV~ 149 (313)
....|..|..+--.--.-|++|+|+-.
T Consensus 14 ~D~~C~VC~~~t~~~l~pCRvC~RvfH 40 (89)
T 1wil_A 14 NDEMCDVCEVWTAESLFPCRVCTRVFH 40 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCC
T ss_pred CCcccCccccccccceecccccccccc
Confidence 356899999999888899999999743
No 25
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=21.94 E-value=74 Score=21.31 Aligned_cols=37 Identities=19% Similarity=0.456 Sum_probs=22.5
Q ss_pred CeeeccccccccCCCCccCcccCc--cc---ccccccCccccc
Q 021385 123 SVGFCDRCQNGKPPRCHHCSVCQR--CV---LKMDHHCVWVVN 160 (313)
Q Consensus 123 ~~~~C~~C~~~kP~RshHC~~C~~--CV---~~~DHHCpwi~n 160 (313)
....|..|+..-..=...| .|+. |- .--||.|++--.
T Consensus 14 ~~~rC~~C~kkvgl~~f~C-rCg~~FC~~HR~~e~H~C~fDyk 55 (64)
T 1wg2_A 14 PNNRCFSCNKKVGVMGFKC-KCGSTFCGSHRYPEKHECSFDFK 55 (64)
T ss_dssp CSCSCTTTCCCCTTSCEEC-TTSCEECSSSCSSTTTTCCCCCS
T ss_pred cCCcChhhCCcccccCeEe-ecCCEecccCCCccccCCCcchh
Confidence 3467888886533335778 5755 22 333898986543
No 26
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=21.90 E-value=19 Score=20.61 Aligned_cols=8 Identities=38% Similarity=1.427 Sum_probs=6.1
Q ss_pred ccCcccCc
Q 021385 139 HHCSVCQR 146 (313)
Q Consensus 139 hHC~~C~~ 146 (313)
.||+.|++
T Consensus 10 qhcrfckk 17 (37)
T 2elu_A 10 QHCRFCKK 17 (37)
T ss_dssp CEETTTTE
T ss_pred HHHHHHHH
Confidence 58888876
No 27
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.88 E-value=23 Score=25.07 Aligned_cols=22 Identities=18% Similarity=0.682 Sum_probs=13.5
Q ss_pred eeeccccccccCCCCccCcccCc
Q 021385 124 VGFCDRCQNGKPPRCHHCSVCQR 146 (313)
Q Consensus 124 ~~~C~~C~~~kP~RshHC~~C~~ 146 (313)
...|..|+.--++.+ .|..|++
T Consensus 18 ~~~C~~C~~~~~~~a-fCPeCgq 39 (81)
T 2jrp_A 18 TAHCETCAKDFSLQA-LCPDCRQ 39 (81)
T ss_dssp EEECTTTCCEEEEEE-ECSSSCS
T ss_pred ceECccccccCCCcc-cCcchhh
Confidence 445666666666666 6666654
No 28
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=21.31 E-value=47 Score=21.99 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=16.7
Q ss_pred CeeeccccccccCCCCccCcccCc
Q 021385 123 SVGFCDRCQNGKPPRCHHCSVCQR 146 (313)
Q Consensus 123 ~~~~C~~C~~~kP~RshHC~~C~~ 146 (313)
..+.|..|..+-- .+.|..||.
T Consensus 5 ~mr~C~~CgvYTL--k~~CP~CG~ 26 (60)
T 2apo_B 5 RMKKCPKCGLYTL--KEICPKCGE 26 (60)
T ss_dssp CCEECTTTCCEES--SSBCSSSCS
T ss_pred hceeCCCCCCEec--cccCcCCCC
Confidence 4688999987766 667887775
No 29
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=20.49 E-value=48 Score=25.61 Aligned_cols=27 Identities=30% Similarity=0.684 Sum_probs=17.7
Q ss_pred CCCCeeeccccccccCCC--------CccCcccCc
Q 021385 120 PSRSVGFCDRCQNGKPPR--------CHHCSVCQR 146 (313)
Q Consensus 120 ~~~~~~~C~~C~~~kP~R--------shHC~~C~~ 146 (313)
.....+||++|+..-.++ -.-|+.|+.
T Consensus 20 ~~~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY 54 (133)
T 3qt1_I 20 HMTTFRFCRDCNNMLYPREDKENNRLLFECRTCSY 54 (133)
T ss_dssp --CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCC
T ss_pred cccCCeeCCCCCCEeeECccCCCceeEEECCCCCC
Confidence 345689999999664443 266777765
No 30
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=20.47 E-value=23 Score=29.67 Aligned_cols=17 Identities=24% Similarity=0.659 Sum_probs=13.8
Q ss_pred cCCCCccCcccCccccc
Q 021385 134 KPPRCHHCSVCQRCVLK 150 (313)
Q Consensus 134 kP~RshHC~~C~~CV~~ 150 (313)
++.|..||..|..|..|
T Consensus 191 ~~~~~~~CG~C~~C~~r 207 (232)
T 2pg3_A 191 NGIKGDGCGQCAACHLR 207 (232)
T ss_dssp TSCCTTTTSCSHHHHHH
T ss_pred CCCCCCcCCcCHhHHHH
Confidence 45556899999999877
Done!