Query 021386
Match_columns 313
No_of_seqs 208 out of 1219
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 02:32:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021386.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021386hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2918 Carboxymethyl transfer 100.0 4.3E-83 9.3E-88 584.1 24.6 295 7-310 15-330 (335)
2 TIGR00027 mthyl_TIGR00027 meth 100.0 1.2E-36 2.6E-41 280.2 21.2 215 18-263 3-256 (260)
3 PF04072 LCM: Leucine carboxyl 100.0 3.5E-38 7.7E-43 276.2 10.2 167 14-209 1-183 (183)
4 COG3315 O-Methyltransferase in 100.0 3.5E-35 7.6E-40 274.7 20.3 222 12-262 11-270 (297)
5 PF04672 Methyltransf_19: S-ad 98.0 3.1E-05 6.7E-10 71.5 9.5 116 86-222 69-190 (267)
6 TIGR00740 methyltransferase, p 97.6 0.0031 6.7E-08 57.1 15.0 106 86-222 54-162 (239)
7 TIGR02716 C20_methyl_CrtF C-20 97.5 0.0048 1E-07 58.1 15.7 137 86-254 150-304 (306)
8 PRK15451 tRNA cmo(5)U34 methyl 97.0 0.016 3.4E-07 53.0 13.0 105 87-222 58-165 (247)
9 PTZ00098 phosphoethanolamine N 96.9 0.02 4.3E-07 52.9 13.0 146 86-265 53-211 (263)
10 PRK11036 putative S-adenosyl-L 96.7 0.033 7.1E-07 51.0 13.0 160 60-258 25-209 (255)
11 TIGR00452 methyltransferase, p 96.6 0.096 2.1E-06 49.8 15.5 174 48-259 88-276 (314)
12 PF12147 Methyltransf_20: Puta 96.3 0.26 5.6E-06 46.3 15.6 164 56-251 110-293 (311)
13 PRK15068 tRNA mo(5)U34 methylt 96.2 0.19 4.1E-06 47.9 14.9 139 87-258 124-276 (322)
14 TIGR03438 probable methyltrans 95.9 0.65 1.4E-05 43.7 16.8 122 64-218 49-174 (301)
15 PF00891 Methyltransf_2: O-met 95.8 0.13 2.8E-06 46.5 11.2 97 86-222 101-200 (241)
16 PLN02244 tocopherol O-methyltr 95.5 0.76 1.6E-05 44.1 15.9 142 86-259 119-281 (340)
17 TIGR02021 BchM-ChlM magnesium 94.9 1.2 2.6E-05 39.5 14.3 134 86-254 56-204 (219)
18 PLN03075 nicotianamine synthas 94.7 0.63 1.4E-05 43.9 12.4 190 33-263 76-268 (296)
19 PLN02490 MPBQ/MSBQ methyltrans 94.6 0.98 2.1E-05 43.5 13.8 140 87-261 115-261 (340)
20 TIGR02752 MenG_heptapren 2-hep 94.6 1.5 3.3E-05 39.0 14.3 138 87-256 47-218 (231)
21 PRK07580 Mg-protoporphyrin IX 94.4 3.4 7.4E-05 36.5 16.8 136 86-256 64-214 (230)
22 PLN02585 magnesium protoporphy 94.1 1.6 3.4E-05 41.6 13.9 137 86-253 145-296 (315)
23 smart00828 PKS_MT Methyltransf 94.0 2.6 5.7E-05 37.2 14.5 160 88-281 2-172 (224)
24 PF01209 Ubie_methyltran: ubiE 93.6 0.88 1.9E-05 41.3 10.8 37 87-123 49-85 (233)
25 PLN02336 phosphoethanolamine N 93.5 1.5 3.3E-05 43.7 13.4 134 87-252 39-178 (475)
26 PF08003 Methyltransf_9: Prote 93.5 2.8 6E-05 39.8 14.1 148 87-273 117-279 (315)
27 PF06080 DUF938: Protein of un 93.0 2.3 5E-05 38.0 12.2 158 65-257 14-193 (204)
28 PF03848 TehB: Tellurite resis 92.7 2 4.3E-05 38.0 11.3 131 86-253 31-166 (192)
29 PF13649 Methyltransf_25: Meth 92.7 0.3 6.5E-06 37.7 5.5 93 89-212 1-97 (101)
30 PLN02336 phosphoethanolamine N 92.3 3.8 8.3E-05 40.8 14.2 144 86-263 267-421 (475)
31 TIGR03439 methyl_EasF probable 91.8 11 0.00025 35.9 16.0 114 86-222 77-199 (319)
32 PF03291 Pox_MCEL: mRNA cappin 91.3 1.6 3.5E-05 41.8 9.8 178 86-281 63-296 (331)
33 PLN02233 ubiquinone biosynthes 91.1 12 0.00026 34.3 15.1 108 86-222 74-183 (261)
34 KOG2361 Predicted methyltransf 90.5 1.2 2.6E-05 40.8 7.6 140 88-253 74-234 (264)
35 PRK12335 tellurite resistance 90.4 7.1 0.00015 36.3 13.1 130 87-254 122-257 (287)
36 PF13489 Methyltransf_23: Meth 90.2 6 0.00013 32.4 11.4 139 64-253 8-160 (161)
37 PRK06202 hypothetical protein; 89.6 12 0.00025 33.5 13.4 134 86-254 61-220 (232)
38 TIGR00477 tehB tellurite resis 89.0 15 0.00032 32.1 15.0 129 87-255 32-168 (195)
39 PF12847 Methyltransf_18: Meth 88.7 2.6 5.7E-05 32.5 7.6 103 87-219 3-109 (112)
40 PLN02396 hexaprenyldihydroxybe 88.2 24 0.00053 33.6 15.5 163 60-257 107-290 (322)
41 TIGR03587 Pse_Me-ase pseudamin 88.1 11 0.00023 33.4 11.9 110 68-221 33-142 (204)
42 PRK11873 arsM arsenite S-adeno 88.0 21 0.00045 32.6 14.8 137 86-254 78-228 (272)
43 PRK11207 tellurite resistance 87.8 18 0.00039 31.6 15.6 134 87-256 32-170 (197)
44 TIGR01934 MenG_MenH_UbiE ubiqu 86.2 22 0.00047 30.9 15.0 103 86-222 40-144 (223)
45 PF13847 Methyltransf_31: Meth 85.1 14 0.00031 30.5 10.6 107 86-222 4-111 (152)
46 PRK14103 trans-aconitate 2-met 84.0 32 0.0007 31.1 15.9 126 86-251 30-179 (255)
47 PF08241 Methyltransf_11: Meth 83.4 15 0.00033 26.8 9.6 93 90-218 1-94 (95)
48 PRK00216 ubiE ubiquinone/menaq 81.1 37 0.00081 29.7 15.1 36 87-122 53-88 (239)
49 PLN02366 spermidine synthase 81.0 11 0.00024 35.8 9.2 121 86-214 92-229 (308)
50 PRK00811 spermidine synthase; 79.5 20 0.00044 33.4 10.3 125 86-218 77-218 (283)
51 KOG3178 Hydroxyindole-O-methyl 79.3 19 0.00041 34.7 10.1 98 86-222 178-276 (342)
52 smart00138 MeTrc Methyltransfe 77.4 33 0.00073 31.5 11.0 55 155-219 185-240 (264)
53 PRK11188 rrmJ 23S rRNA methylt 73.5 65 0.0014 28.5 12.0 101 87-219 53-163 (209)
54 cd02440 AdoMet_MTases S-adenos 70.5 36 0.00079 24.3 10.4 97 89-218 2-101 (107)
55 PF05401 NodS: Nodulation prot 70.1 46 0.001 29.7 9.4 99 86-219 44-144 (201)
56 PHA03412 putative methyltransf 67.2 5.8 0.00012 36.4 3.3 34 87-120 194-228 (241)
57 PRK05134 bifunctional 3-demeth 66.7 91 0.002 27.5 13.5 135 86-255 49-204 (233)
58 PF03059 NAS: Nicotianamine sy 66.4 40 0.00087 31.5 8.8 190 33-263 73-265 (276)
59 KOG4300 Predicted methyltransf 66.3 47 0.001 30.1 8.7 104 86-222 77-183 (252)
60 PLN02232 ubiquinone biosynthes 66.0 19 0.00042 30.3 6.2 88 155-254 26-145 (160)
61 PF05185 PRMT5: PRMT5 arginine 65.0 56 0.0012 32.7 10.1 93 87-210 188-285 (448)
62 PRK08317 hypothetical protein; 64.8 94 0.002 26.9 14.7 103 86-222 20-125 (241)
63 PF07109 Mg-por_mtran_C: Magne 63.7 33 0.00072 27.0 6.5 62 192-253 4-79 (97)
64 TIGR02072 BioC biotin biosynth 63.1 1E+02 0.0022 26.8 14.8 129 87-252 36-172 (240)
65 PLN02781 Probable caffeoyl-CoA 63.0 83 0.0018 28.4 10.1 108 86-222 69-178 (234)
66 TIGR01983 UbiG ubiquinone bios 61.8 1.1E+02 0.0024 26.7 14.4 136 86-255 46-202 (224)
67 COG4106 Tam Trans-aconitate me 60.8 23 0.00049 32.3 5.7 95 86-219 31-127 (257)
68 TIGR00438 rrmJ cell division p 57.8 1.2E+02 0.0026 25.9 10.5 102 86-219 33-144 (188)
69 PTZ00146 fibrillarin; Provisio 57.0 1.8E+02 0.0038 27.5 13.3 134 87-257 134-272 (293)
70 PHA03411 putative methyltransf 55.9 7.1 0.00015 36.6 1.8 34 87-120 206-240 (279)
71 COG0421 SpeE Spermidine syntha 55.4 1.7E+02 0.0036 27.5 10.9 123 86-216 77-215 (282)
72 TIGR00417 speE spermidine synt 55.3 1.4E+02 0.003 27.4 10.3 123 86-216 73-211 (270)
73 KOG1975 mRNA cap methyltransfe 55.1 2.1E+02 0.0045 27.8 16.7 207 50-292 93-365 (389)
74 KOG1540 Ubiquinone biosynthesi 54.5 1.9E+02 0.0041 27.1 13.0 44 86-129 101-151 (296)
75 PRK00121 trmB tRNA (guanine-N( 52.8 1.4E+02 0.003 26.1 9.5 128 86-252 41-177 (202)
76 smart00650 rADc Ribosomal RNA 52.3 1.4E+02 0.003 25.0 9.6 58 86-167 14-71 (169)
77 TIGR03534 RF_mod_PrmC protein- 52.0 1.7E+02 0.0037 25.8 14.3 31 87-118 89-119 (251)
78 COG4262 Predicted spermidine s 50.6 40 0.00088 33.1 5.9 117 86-210 290-426 (508)
79 PRK11705 cyclopropane fatty ac 50.2 2.5E+02 0.0055 27.3 18.1 138 87-263 169-319 (383)
80 KOG1271 Methyltransferases [Ge 47.9 64 0.0014 28.7 6.3 174 32-253 18-202 (227)
81 PRK01683 trans-aconitate 2-met 47.3 2.1E+02 0.0046 25.6 18.5 128 86-251 32-182 (258)
82 PF08557 Lipid_DES: Sphingolip 46.6 18 0.00039 23.6 2.0 33 109-142 4-36 (39)
83 PF05891 Methyltransf_PK: AdoM 44.9 56 0.0012 29.5 5.7 69 185-253 124-198 (218)
84 PF09243 Rsm22: Mitochondrial 44.2 2.6E+02 0.0057 25.8 12.1 130 86-252 34-164 (274)
85 COG3580 Uncharacterized protei 43.8 40 0.00086 32.2 4.6 48 67-120 262-314 (351)
86 PRK06922 hypothetical protein; 42.0 2.7E+02 0.0059 29.5 10.8 107 87-222 420-538 (677)
87 COG1570 XseA Exonuclease VII, 39.0 2.7E+02 0.0058 27.9 9.8 127 153-298 87-232 (440)
88 PRK14968 putative methyltransf 38.4 2.3E+02 0.0051 23.5 15.6 35 87-124 25-60 (188)
89 PF02353 CMAS: Mycolic acid cy 37.1 3.4E+02 0.0074 25.1 16.9 141 87-262 64-223 (273)
90 PRK10258 biotin biosynthesis p 36.2 3.1E+02 0.0068 24.4 13.7 35 86-123 43-78 (251)
91 PRK11783 rlmL 23S rRNA m(2)G24 34.4 4.5E+02 0.0098 27.8 11.4 83 54-166 518-600 (702)
92 COG0021 TktA Transketolase [Ca 33.5 1.1E+02 0.0024 32.1 6.4 75 184-263 150-229 (663)
93 KOG1500 Protein arginine N-met 33.3 2.1E+02 0.0046 27.9 7.8 75 86-192 178-252 (517)
94 COG2263 Predicted RNA methylas 32.6 96 0.0021 27.6 5.0 116 87-254 47-166 (198)
95 PF01564 Spermine_synth: Sperm 32.5 3.8E+02 0.0083 24.3 9.5 124 86-215 77-215 (246)
96 PRK00536 speE spermidine synth 31.7 4.2E+02 0.0091 24.5 11.1 120 86-215 73-195 (262)
97 PRK04266 fibrillarin; Provisio 30.2 4E+02 0.0087 23.8 14.4 153 61-257 54-211 (226)
98 PF05175 MTS: Methyltransferas 29.9 2.5E+02 0.0054 23.6 7.2 54 68-130 22-77 (170)
99 PRK10611 chemotaxis methyltran 29.4 53 0.0012 30.9 3.2 34 185-218 225-259 (287)
100 TIGR02081 metW methionine bios 28.3 3.8E+02 0.0081 22.9 13.2 23 233-255 144-166 (194)
101 PF07091 FmrO: Ribosomal RNA m 27.1 70 0.0015 29.5 3.4 62 61-130 88-150 (251)
102 PF14965 BRI3BP: Negative regu 26.8 86 0.0019 27.3 3.7 34 170-211 50-83 (177)
103 PF08242 Methyltransf_12: Meth 26.7 45 0.00097 25.0 1.8 32 183-216 66-98 (99)
104 PF05148 Methyltransf_8: Hypot 26.1 4.5E+02 0.0097 23.8 8.2 111 86-254 73-183 (219)
105 PLN02589 caffeoyl-CoA O-methyl 25.9 5.1E+02 0.011 23.6 9.6 103 86-222 80-190 (247)
106 COG2226 UbiE Methylase involve 25.9 5.1E+02 0.011 23.6 12.2 37 87-124 53-90 (238)
107 PLN02823 spermine synthase 25.7 6E+02 0.013 24.4 12.0 130 86-222 104-254 (336)
108 COG2230 Cfa Cyclopropane fatty 24.6 5.9E+02 0.013 23.9 13.6 217 29-295 19-264 (283)
109 PRK05785 hypothetical protein; 24.5 5E+02 0.011 23.0 10.7 35 87-123 53-88 (226)
110 PF02254 TrkA_N: TrkA-N domain 23.6 3.4E+02 0.0073 20.7 8.0 72 157-252 42-113 (116)
111 TIGR00537 hemK_rel_arch HemK-r 23.2 4.5E+02 0.0097 22.0 14.1 34 87-123 21-55 (179)
112 PRK08287 cobalt-precorrin-6Y C 23.0 4.6E+02 0.01 22.1 14.1 120 87-254 33-154 (187)
113 PF01739 CheR: CheR methyltran 22.9 99 0.0021 27.3 3.5 56 154-219 117-172 (196)
114 PRK12738 kbaY tagatose-bisphos 22.2 3.7E+02 0.0079 25.3 7.3 87 154-253 15-102 (286)
115 TIGR00237 xseA exodeoxyribonuc 22.0 5.9E+02 0.013 25.3 9.1 114 154-273 82-214 (432)
116 KOG2535 RNA polymerase II elon 21.5 5.7E+02 0.012 25.1 8.4 87 166-253 304-407 (554)
117 TIGR01858 tag_bisphos_ald clas 21.2 3.9E+02 0.0084 25.1 7.2 87 154-253 13-100 (282)
118 PF09861 DUF2088: Domain of un 21.1 4.4E+02 0.0095 23.4 7.3 64 155-221 55-126 (204)
119 PRK09195 gatY tagatose-bisphos 21.0 3.5E+02 0.0075 25.4 6.9 87 154-253 15-102 (284)
120 PF00398 RrnaAD: Ribosomal RNA 20.8 6.3E+02 0.014 22.9 9.2 89 86-210 31-119 (262)
121 PF06180 CbiK: Cobalt chelatas 20.7 2.2E+02 0.0048 26.3 5.5 79 179-257 98-205 (262)
122 cd02756 MopB_Arsenite-Ox Arsen 20.5 52 0.0011 34.8 1.4 37 85-121 15-53 (676)
123 COG0083 ThrB Homoserine kinase 20.5 52 0.0011 31.2 1.3 20 87-106 10-29 (299)
124 cd06592 GH31_glucosidase_KIAA1 20.4 3.1E+02 0.0067 25.7 6.5 75 183-257 14-92 (303)
125 PRK13255 thiopurine S-methyltr 20.3 6.1E+02 0.013 22.5 15.8 146 87-255 39-189 (218)
126 KOG1499 Protein arginine N-met 20.1 8.1E+02 0.017 23.8 9.2 100 60-199 43-143 (346)
No 1
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-83 Score=584.08 Aligned_cols=295 Identities=38% Similarity=0.673 Sum_probs=269.3
Q ss_pred cCcccchhhhhhcHHHHHhhhhhhhcCCCCchhHHhhhc-CCCcCCccccchhHHHHHHHHHHHHHHHhcCCCCCCCCCc
Q 021386 7 DSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVR-RPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHT 85 (313)
Q Consensus 7 ~~~~~d~~Vq~T~~~a~~sk~sav~~gy~~Dpfa~~fv~-~~~rr~P~inrG~~~R~~~id~~v~~fl~~~~~~~~~~~~ 85 (313)
...+.|.+||+||+||+.||++++..||+.|||+.+|+. +..||+|.||||||+|+.+|+..|.+||.+..+
T Consensus 15 ~~~~~d~~vq~Tnddss~ck~~~~~~gy~~d~~~~~~~~~~~~rr~P~inRGy~~R~~aI~~~v~~Fl~~~~~------- 87 (335)
T KOG2918|consen 15 RGKSADSAVQGTNDDSSLCKRSATKSGYWHDPFIKLFVPSKKARRAPEINRGYWARTMAIRHAVRAFLEQTDG------- 87 (335)
T ss_pred cccCcchhhhhccchhhhhhhHHHhcCCccCchhhhhccccccCCCceecchhhHHHHHHHHHHHHHHHhcCC-------
Confidence 345788999999999999999999999999999999998 677899999999999999999999999999665
Q ss_pred cceEEEeCCCCchhhhhhcccC-CCCCEEEEecchhHHHHHHHHHhccccch---hhhcccccccccCCcccCCCeEEEe
Q 021386 86 KKQILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIEVTSKKAALIETHGELK---DKVGVTASISQAKGEVLGDNYKLLP 161 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~-~~~~~~~EvD~p~vi~~K~~~i~~~~~l~---~~~g~~~~~~~~~~~l~s~~y~lv~ 161 (313)
++||||||||+||++|||...+ ..++.|||||||+++++|..++.+.|.++ ++.+++ ....+++.+++.+|+++|
T Consensus 88 ~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD-~~~~s~~~l~s~~Y~~~g 166 (335)
T KOG2918|consen 88 KKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDED-VVDLSGTDLHSGRYHLIG 166 (335)
T ss_pred ceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhcccccc-ccccCcceeccCceeeec
Confidence 8999999999999999998875 57899999999999999996655555532 222333 455677789999999999
Q ss_pred ccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEEEEec----------------ccC
Q 021386 162 VDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQ----------------SRG 225 (313)
Q Consensus 162 ~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~----------------~rg 225 (313)
||||+.+.++++|..+|+|.+.|||||+||||+||+|+++..||+|+++.|+++.||+||| .||
T Consensus 167 ~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg~vM~~nlk~r~ 246 (335)
T KOG2918|consen 167 CDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRFGKVMLANLKRRG 246 (335)
T ss_pred cchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCChHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred CccccccCCCCHHHHHHHHHHcCCceeEEcCHHHHHhcCCCHHHHHHHhhccCCCcHHHHHHHhcCcEEEEEecCCcccc
Q 021386 226 CALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGLF 305 (313)
Q Consensus 226 ~~l~~~~~~~t~~~q~~Rf~~~Gw~~~~~~dm~~~y~~~l~~~er~ri~~lE~fDE~Ee~~l~~~HY~i~~a~~~~~~~~ 305 (313)
+||+|++.|+|+|+|++||.++||+.|.+.||+++|+.++|.+||+|+++||||||+|||+++|+|||+++|+++ ....
T Consensus 247 ~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ei~n~~lp~~Ek~rie~lE~lDE~Eel~~l~~HYcL~~A~~~-~~~~ 325 (335)
T KOG2918|consen 247 CPLHGLETYNSIESQRSRFLKAGWEYVIAVDMNEIYNFSLPEAEKKRIESLEPLDELEELHLLCQHYCLCHATKG-VFKG 325 (335)
T ss_pred CCCchhhhcccHHHHHHHHHhcCCceeehhhHHHHHHhhCCHHHHHHHhhcccchhHHHHHHHHHHheeeeeecc-cccC
Confidence 999999999999999999999999999999999999989999999999999999999999999999999999998 3333
Q ss_pred cccCC
Q 021386 306 GDFGF 310 (313)
Q Consensus 306 ~~~~~ 310 (313)
..+++
T Consensus 326 ~~l~l 330 (335)
T KOG2918|consen 326 IELGL 330 (335)
T ss_pred ceecc
Confidence 33444
No 2
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=100.00 E-value=1.2e-36 Score=280.23 Aligned_cols=215 Identities=20% Similarity=0.256 Sum_probs=166.3
Q ss_pred hcHHHHHhhhhhhh--cCCCCchhHHhhhcCCCc------------------CCccccchhHHHHHHHHHHHHHHHhcCC
Q 021386 18 TNDDASASKLSCVK--KGYMKDDYIHLFVRRPVR------------------RSPIINRGYFARWAALRRLLYQFLDCGS 77 (313)
Q Consensus 18 T~~~a~~sk~sav~--~gy~~Dpfa~~fv~~~~r------------------r~P~inrG~~~R~~~id~~v~~fl~~~~ 77 (313)
|+-..+..|....+ .+++.||||..|+++... ..|.+..++.+|++.||+.+.+|++++
T Consensus 3 Tal~~a~~RA~es~r~~~l~~Dp~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rtr~~D~~i~~~~~~g- 81 (260)
T TIGR00027 3 TALGVAAARAIETQRPDRLFRDPYAAAFLGAAGRAAMPLDGLLRADAGAYDGLLGGFADFIAVRTRFFDDFLLAAVAAG- 81 (260)
T ss_pred HHHHHHHHHHHHhCCCCcCcCChHHHHHhchhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 44444444433322 389999999999975332 012355677899999999999999864
Q ss_pred CCCCCCCccceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCe
Q 021386 78 DGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNY 157 (313)
Q Consensus 78 ~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y 157 (313)
..||||||||||||+|||.++ .+++|||||+|+|++.|+++|.++.. ..+++|
T Consensus 82 --------~~qvV~LGaGlDTr~~Rl~~~--~~~~~~EvD~P~v~~~K~~~l~~~~~-----------------~~~~~~ 134 (260)
T TIGR00027 82 --------IRQVVILGAGLDTRAYRLPWP--DGTRVFEVDQPAVLAFKEKVLAELGA-----------------EPPAHR 134 (260)
T ss_pred --------CcEEEEeCCccccHHHhcCCC--CCCeEEECCChHHHHHHHHHHHHcCC-----------------CCCCce
Confidence 479999999999999999876 57999999999999999999987421 136899
Q ss_pred EEEeccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEEEEecc--------------
Q 021386 158 KLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQS-------------- 223 (313)
Q Consensus 158 ~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~~-------------- 223 (313)
++|++||+ .+ |.+.|..+|+|++.||+||+|||+|||+++++++||+++++.|++++.+.||..
T Consensus 135 ~~v~~Dl~-~~-w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~ 212 (260)
T TIGR00027 135 RAVPVDLR-QD-WPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAP 212 (260)
T ss_pred EEeccCch-hh-HHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHH
Confidence 99999999 44 566788889999999999999999999999999999999999977777777750
Q ss_pred -----cCCccccccCCCCHHHHHHHHHHcCCceeEEcCHHHHHhc
Q 021386 224 -----RGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYST 263 (313)
Q Consensus 224 -----rg~~l~~~~~~~t~~~q~~Rf~~~Gw~~~~~~dm~~~y~~ 263 (313)
++..+....-..+.++..+.|..+||+.... +..++-..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~-~~~e~~~~ 256 (260)
T TIGR00027 213 VYHAARGVDGSGLVFGIDRADVAEWLAERGWRASEH-TPGELARR 256 (260)
T ss_pred HHHhhhcccccccccCCChhhHHHHHHHCCCeeecC-CHHHHHHH
Confidence 0111222222345678888899999998776 66666443
No 3
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=100.00 E-value=3.5e-38 Score=276.21 Aligned_cols=167 Identities=32% Similarity=0.500 Sum_probs=136.7
Q ss_pred hhhhhcHHHHHhhhhhhhcCCCCchhHHhhhcCCCc----------------CCccccchhHHHHHHHHHHHHHHHhcCC
Q 021386 14 AVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVR----------------RSPIINRGYFARWAALRRLLYQFLDCGS 77 (313)
Q Consensus 14 ~Vq~T~~~a~~sk~sav~~gy~~Dpfa~~fv~~~~r----------------r~P~inrG~~~R~~~id~~v~~fl~~~~ 77 (313)
+++.++..|..|++. .+||.|||+..|+++..+ +.|.+++|+++|+++||..+.+|+.+++
T Consensus 1 al~~~~~RA~~s~~~---~~~~~Dp~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rt~~iD~~v~~~i~~~~ 77 (183)
T PF04072_consen 1 ALITAAARAAESKRP---DPYFEDPYAARLLSKLGRAWLKDYDFSKFNAASARDPGINRGYAARTRYIDDAVREFIAKHP 77 (183)
T ss_dssp HHHHHHHHHHHHHHH---HCSSHTCCCCHHHHCCCCHCC-B--SGHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCC---CcccCCHhHHHHHcccccccccchhhhcccccccccHHHHhHHHHHHHHHHHHHHHhhccCC
Confidence 345667778888875 799999999999987511 3788999999999999999999999876
Q ss_pred CCCCCCCccceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCe
Q 021386 78 DGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNY 157 (313)
Q Consensus 78 ~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y 157 (313)
+ .+|||+||||||||+|||... .++++|||||+|+|++.|+++|.++... .++++
T Consensus 78 ~-------~~qvV~LGaGlDTr~~Rl~~~-~~~~~~~evD~p~v~~~K~~~l~~~~~~-----------------~~~~~ 132 (183)
T PF04072_consen 78 G-------ARQVVNLGAGLDTRAYRLDNP-AGGVRWFEVDLPEVIALKRRLLPESGAR-----------------PPANY 132 (183)
T ss_dssp T-------ESEEEEET-TT--HHHHHHHT-TTTEEEEEEE-HHHHHHHHHHHHHTHHH-----------------HHEES
T ss_pred C-------CcEEEEcCCCCCchHHHhhcc-ccceEEEEeCCHHHHHHHHHHHHhCccc-----------------CCcce
Confidence 5 569999999999999999986 2489999999999999999999985331 12467
Q ss_pred EEEeccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHH
Q 021386 158 KLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWAS 209 (313)
Q Consensus 158 ~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la 209 (313)
+++++||++. .|.+.|.++|++++.||+||+|||++||+++++.++|++|+
T Consensus 133 ~~v~~Dl~~~-~~~~~L~~~g~~~~~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 133 RYVPADLRDD-SWIDALPKAGFDPDRPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp SEEES-TTSH-HHHHHHHHCTT-TTSEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred eEEeccccch-hhHHHHHHhCCCCCCCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 7899999995 56667888899999999999999999999999999999985
No 4
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.5e-35 Score=274.71 Aligned_cols=222 Identities=22% Similarity=0.293 Sum_probs=172.0
Q ss_pred chhhhhhcHHHHHhhhhhhhc--CCCCchhHHhhhcCCC---cCC--ccc--------cc--hhHHHHHHHHHHHHHHHh
Q 021386 12 KAAVQATNDDASASKLSCVKK--GYMKDDYIHLFVRRPV---RRS--PII--------NR--GYFARWAALRRLLYQFLD 74 (313)
Q Consensus 12 d~~Vq~T~~~a~~sk~sav~~--gy~~Dpfa~~fv~~~~---rr~--P~i--------nr--G~~~R~~~id~~v~~fl~ 74 (313)
-..|-.|+--.+.+|....++ ++++||||..|++... .+. |.. ++ ++.+|++.||+.+.+|+.
T Consensus 11 ~~~v~~Tal~~a~~RA~es~~~~~L~~D~~A~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~Rtr~fD~~~~~~~~ 90 (297)
T COG3315 11 LSGVGKTALIVAAARALESRKPDPLIDDPFAEELVRQGDDDFTKLADPALALGGGDFLERMNFLAARTRYFDDFVRAALD 90 (297)
T ss_pred hcchhHHHHHHHHHHHHHhcCCCcccCCHHHHHHHhhhHHHHHHhcChhhhcccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 345778888877777766653 7999999999997431 000 222 22 588999999999999999
Q ss_pred cCCCCCCCCCccceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccC
Q 021386 75 CGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLG 154 (313)
Q Consensus 75 ~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s 154 (313)
.+ ..|||+||||||||+||+.++ .+++|||||+|+|++.|+++|+++.. . .+
T Consensus 91 ~g---------~~qvViLgaGLDTRayRl~~~--~~~~vfEvD~Pevi~~K~~~l~e~~~------~-----------~~ 142 (297)
T COG3315 91 AG---------IRQVVILGAGLDTRAYRLDWP--KGTRVFEVDLPEVIEFKKKLLAERGA------T-----------PP 142 (297)
T ss_pred hc---------ccEEEEeccccccceeecCCC--CCCeEEECCCcHHHHHHHHHhhhcCC------C-----------CC
Confidence 87 389999999999999999987 58999999999999999999987421 1 26
Q ss_pred CCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEEEEec-------ccC--
Q 021386 155 DNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQ-------SRG-- 225 (313)
Q Consensus 155 ~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~-------~rg-- 225 (313)
.++++|++||++.+| .+.|.++|||++.||+||+||||+||++++++++|+.|++.+++++.+.++. .+.
T Consensus 143 ~~~~~Va~Dl~~~dw-~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~ 221 (297)
T COG3315 143 AHRRLVAVDLREDDW-PQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRR 221 (297)
T ss_pred ceEEEEeccccccch-HHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccc
Confidence 799999999998665 5567888999999999999999999999999999999999999888887654 010
Q ss_pred ----Cccc-------ccc-CCCCHHHHHHHHHHcCCceeEEcCHHHHHh
Q 021386 226 ----CALL-------GIN-ATPTLLAKEKLFLDQGWQQAVAWDMLRVYS 262 (313)
Q Consensus 226 ----~~l~-------~~~-~~~t~~~q~~Rf~~~Gw~~~~~~dm~~~y~ 262 (313)
..+. .+. ...........+.++||.........+.+.
T Consensus 222 ~~~~~~~~~~~~~~~e~~~~~~~~~e~~~~l~~~g~~~~~~~~~~~~~~ 270 (297)
T COG3315 222 PAARKTMRGEDLDRGELVYFGDDPAEIETWLAERGWRSTLNRTTEDLAA 270 (297)
T ss_pred hhhhhhccccccccccceeccCCHHHHHHHHHhcCEEEEecCCcHHHHH
Confidence 0111 011 123456677778899998876644444433
No 5
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.02 E-value=3.1e-05 Score=71.52 Aligned_cols=116 Identities=21% Similarity=0.280 Sum_probs=66.0
Q ss_pred cceEEEeCCCCchhh--hhhcccCC--CCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEe
Q 021386 86 KKQILSLGAGFDTTY--FQLQAEGK--APHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLP 161 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~--~RL~~~~~--~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~ 161 (313)
..|++-||||+=|.. ..+...-. ..+.|+|.| |-|++.=+.+|..++ ..+-.+|.
T Consensus 69 IrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~D-Pvv~ah~ralL~~~~--------------------~g~t~~v~ 127 (267)
T PF04672_consen 69 IRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDND-PVVLAHARALLADNP--------------------RGRTAYVQ 127 (267)
T ss_dssp --EEEEET--S--SS-HHHHHHHH-TT-EEEEEESS-HHHHHCCHHHHTT-T--------------------TSEEEEEE
T ss_pred cceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCC-chHHHHHHhhhcCCC--------------------CccEEEEe
Confidence 799999999998763 22211102 345555555 456666666666421 22478899
Q ss_pred ccCCCchhHHHHH-HhCCCCCCCCEEEEEecccccCCh-HHHHHHHHHHHhcCCCcEEEEEec
Q 021386 162 VDLRDIQMLNEVI-NLANMDPSLPTFIIAECVLIYLDP-DSSRAIVGWASKTFSTAVFFLYEQ 222 (313)
Q Consensus 162 ~DL~~~~~l~~~L-~~~g~d~~~PTl~i~Egvl~YL~~-~~~~~ll~~la~~f~~~~~i~ye~ 222 (313)
+|+++++.+-+-. ...-+|.+.|+-++.=+||.+++. ++...+++.+.+..+.||.+..-.
T Consensus 128 aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 128 ADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp --TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred CCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 9999986654311 123589999999999999999977 889999999999998888776544
No 6
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.57 E-value=0.0031 Score=57.10 Aligned_cols=106 Identities=14% Similarity=0.212 Sum_probs=71.1
Q ss_pred cceEEEeCCCCchhhhhhcccC-CCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEecc
Q 021386 86 KKQILSLGAGFDTTYFQLQAEG-KAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~-~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~D 163 (313)
...|+-+|||.=.....+.... .++.+++=||. |++++.=++.+.... ...+.+++..|
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~-------------------~~~~v~~~~~d 114 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH-------------------SEIPVEILCND 114 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcC-------------------CCCCeEEEECC
Confidence 3579999999876655543321 24678888888 666654444444311 02457788888
Q ss_pred CCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec
Q 021386 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ 222 (313)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~ 222 (313)
+.+.. +. ...++++-.++.|+++++...+++.+.+.. |+|.+++.|.
T Consensus 115 ~~~~~----------~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~ 162 (239)
T TIGR00740 115 IRHVE----------IK--NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEK 162 (239)
T ss_pred hhhCC----------CC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence 76532 11 234788888999999988889999988876 6788877665
No 7
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.49 E-value=0.0048 Score=58.07 Aligned_cols=137 Identities=9% Similarity=0.100 Sum_probs=95.1
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
...|+-+|||.=+....+... .++.+++=+|.|++++.=++.+.+. | ..++.++++.|+.
T Consensus 150 ~~~vlDiG~G~G~~~~~~~~~-~p~~~~~~~D~~~~~~~a~~~~~~~-------g------------l~~rv~~~~~d~~ 209 (306)
T TIGR02716 150 VKKMIDVGGGIGDISAAMLKH-FPELDSTILNLPGAIDLVNENAAEK-------G------------VADRMRGIAVDIY 209 (306)
T ss_pred CCEEEEeCCchhHHHHHHHHH-CCCCEEEEEecHHHHHHHHHHHHhC-------C------------ccceEEEEecCcc
Confidence 468999999999888777655 3677888889999887655555432 1 1467899999987
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec---ccCCc--------------
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ---SRGCA-------------- 227 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~---~rg~~-------------- 227 (313)
+.+ +. +. -+++.-.++...+++...++++.+.+.. |+|.++++|. ..+.+
T Consensus 210 ~~~----------~~-~~-D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~ 277 (306)
T TIGR02716 210 KES----------YP-EA-DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPNFDYLSHYILGAGM 277 (306)
T ss_pred CCC----------CC-CC-CEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCchhhHHHHHHHHccc
Confidence 532 11 12 3444456777788888999999998866 6788888886 11111
Q ss_pred cccccCCCCHHHHHHHHHHcCCceeEE
Q 021386 228 LLGINATPTLLAKEKLFLDQGWQQAVA 254 (313)
Q Consensus 228 l~~~~~~~t~~~q~~Rf~~~Gw~~~~~ 254 (313)
+.++..+.+.+...+.+.++||+.+..
T Consensus 278 ~~~~~~~~~~~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 278 PFSVLGFKEQARYKEILESLGYKDVTM 304 (306)
T ss_pred ccccccCCCHHHHHHHHHHcCCCeeEe
Confidence 112334556778888899999987754
No 8
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.00 E-value=0.016 Score=52.99 Aligned_cols=105 Identities=14% Similarity=0.279 Sum_probs=68.4
Q ss_pred ceEEEeCCCCchhhhhhccc-CCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 021386 87 KQILSLGAGFDTTYFQLQAE-GKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~-~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL 164 (313)
..|+-+|||.=.....+... ..++.+++=||. |++++.=++.+... + ...+.+++..|+
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~-------~------------~~~~v~~~~~d~ 118 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-------K------------APTPVDVIEGDI 118 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-------C------------CCCCeEEEeCCh
Confidence 57999999987654444321 025678888888 55554433444321 1 034677788887
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec
Q 021386 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ 222 (313)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~ 222 (313)
.+.. + ...-++++=.++.+++++.-..+++.+.+.. |+|.+++.|.
T Consensus 119 ~~~~----------~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 119 RDIA----------I--ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hhCC----------C--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 6531 1 1133567777888999888889999998866 6788887664
No 9
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=96.91 E-value=0.02 Score=52.91 Aligned_cols=146 Identities=10% Similarity=0.103 Sum_probs=93.1
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHH-HHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAA-LIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~-~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL 164 (313)
...|+-+|||.-.....|... .+..++=+|..+.+-...+ .... ..+..++.+|+
T Consensus 53 ~~~VLDiGcG~G~~a~~la~~--~~~~v~giD~s~~~~~~a~~~~~~----------------------~~~i~~~~~D~ 108 (263)
T PTZ00098 53 NSKVLDIGSGLGGGCKYINEK--YGAHVHGVDICEKMVNIAKLRNSD----------------------KNKIEFEANDI 108 (263)
T ss_pred CCEEEEEcCCCChhhHHHHhh--cCCEEEEEECCHHHHHHHHHHcCc----------------------CCceEEEECCc
Confidence 357999999987766666443 2457777777443322222 1111 23566777777
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEecccCC--ccc---------ccc
Q 021386 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQSRGC--ALL---------GIN 232 (313)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~~rg~--~l~---------~~~ 232 (313)
.+. .+....=-++++-.++.+++.+....+++.+.+.. |+|.+++-|..... +.. ...
T Consensus 109 ~~~----------~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~~~~~~~~~~~~ 178 (263)
T PTZ00098 109 LKK----------DFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDEEFKAYIKKRKY 178 (263)
T ss_pred ccC----------CCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHHHHHHHHHhcCC
Confidence 542 12222334566656667788778889999988866 67887775541100 110 122
Q ss_pred CCCCHHHHHHHHHHcCCceeEEcCHHHHHhcCC
Q 021386 233 ATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFI 265 (313)
Q Consensus 233 ~~~t~~~q~~Rf~~~Gw~~~~~~dm~~~y~~~l 265 (313)
.+.+++...+.+.++||+.+...|+.+.|..++
T Consensus 179 ~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~~ 211 (263)
T PTZ00098 179 TLIPIQEYGDLIKSCNFQNVVAKDISDYWLELL 211 (263)
T ss_pred CCCCHHHHHHHHHHCCCCeeeEEeCcHHHHHHH
Confidence 456888999999999999999989888877654
No 10
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.74 E-value=0.033 Score=50.98 Aligned_cols=160 Identities=18% Similarity=0.212 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCccceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhh
Q 021386 60 ARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDK 138 (313)
Q Consensus 60 ~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~ 138 (313)
+|...+..-+..+++..+. ....|+-+|||.=.....|... +..++=+|. |++++.=++.+.+.
T Consensus 25 ~r~~~~~~~~~~~l~~l~~------~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~------ 89 (255)
T PRK11036 25 IRQAILWQDLDRLLAELPP------RPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAK------ 89 (255)
T ss_pred HHHHHHHHHHHHHHHhcCC------CCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhc------
Confidence 4555555556666665432 1468999999999888888665 456667777 44544433333321
Q ss_pred hcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEE
Q 021386 139 VGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVF 217 (313)
Q Consensus 139 ~g~~~~~~~~~~~l~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~ 217 (313)
| ...+.+++.+|..+.. . +....--++++-.|+.|++.. ..+++.+.+.. |+|.+
T Consensus 90 -g------------~~~~v~~~~~d~~~l~---~------~~~~~fD~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l 145 (255)
T PRK11036 90 -G------------VSDNMQFIHCAAQDIA---Q------HLETPVDLILFHAVLEWVADP--KSVLQTLWSVLRPGGAL 145 (255)
T ss_pred -C------------CccceEEEEcCHHHHh---h------hcCCCCCEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEE
Confidence 1 1356778888876531 1 112234577778889999644 36777777755 66766
Q ss_pred EE--Eec----------------ccCCcc-----ccccCCCCHHHHHHHHHHcCCceeEEcCHH
Q 021386 218 FL--YEQ----------------SRGCAL-----LGINATPTLLAKEKLFLDQGWQQAVAWDML 258 (313)
Q Consensus 218 i~--ye~----------------~rg~~l-----~~~~~~~t~~~q~~Rf~~~Gw~~~~~~dm~ 258 (313)
++ |.. ..+.+- ..-..+.++++..+.+.++||+.+...-+.
T Consensus 146 ~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~gi~ 209 (255)
T PRK11036 146 SLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKTGVR 209 (255)
T ss_pred EEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeeeeEE
Confidence 54 222 011110 000123467888888999999987644433
No 11
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=96.61 E-value=0.096 Score=49.85 Aligned_cols=174 Identities=14% Similarity=0.140 Sum_probs=100.3
Q ss_pred CcCCccccchhHHHHHHHHHHH-HHHHhcCCCCCCCCCccceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHH
Q 021386 48 VRRSPIINRGYFARWAALRRLL-YQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKA 126 (313)
Q Consensus 48 ~rr~P~inrG~~~R~~~id~~v-~~fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~ 126 (313)
-|+.|.--.||.+-+..--.+. ..++..-... ....|+-+|||.-...+++...+ ...++-||.-..+-...
T Consensus 88 ~~~~~~~l~~~~~~~e~~s~~~~~~~l~~l~~~-----~g~~VLDvGCG~G~~~~~~~~~g--~~~v~GiDpS~~ml~q~ 160 (314)
T TIGR00452 88 WRKGPFELSGIKIDSEWRSDIKWDRVLPHLSPL-----KGRTILDVGCGSGYHMWRMLGHG--AKSLVGIDPTVLFLCQF 160 (314)
T ss_pred CCCCCcccccccCCHHHHHHHHHHHHHHhcCCC-----CCCEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHH
Confidence 3556665567765444333322 2333321110 13689999999988888876652 33678899765543322
Q ss_pred HHHhccccchhhhcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHH
Q 021386 127 ALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVG 206 (313)
Q Consensus 127 ~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~ 206 (313)
+.+++. .+. ..+.+++.+|+.+... ...|| ++++-+|+.++.. ...+|+
T Consensus 161 ~~~~~~------~~~------------~~~v~~~~~~ie~lp~------~~~FD-----~V~s~gvL~H~~d--p~~~L~ 209 (314)
T TIGR00452 161 EAVRKL------LDN------------DKRAILEPLGIEQLHE------LYAFD-----TVFSMGVLYHRKS--PLEHLK 209 (314)
T ss_pred HHHHHH------hcc------------CCCeEEEECCHHHCCC------CCCcC-----EEEEcchhhccCC--HHHHHH
Confidence 222220 110 2456677777655321 01233 5777888888743 245677
Q ss_pred HHHhcC-CCcEEEEEec----c---------cCCccccccCCCCHHHHHHHHHHcCCceeEEcCHHH
Q 021386 207 WASKTF-STAVFFLYEQ----S---------RGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLR 259 (313)
Q Consensus 207 ~la~~f-~~~~~i~ye~----~---------rg~~l~~~~~~~t~~~q~~Rf~~~Gw~~~~~~dm~~ 259 (313)
.+.+.. |+|.+++-+. . +-..+..+...||.+.....+.++||+.+.+.+...
T Consensus 210 el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~~~~~ 276 (314)
T TIGR00452 210 QLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFENFRILDVLK 276 (314)
T ss_pred HHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCCHHHHHHHHHHCCCeEEEEEeccC
Confidence 777755 6777664221 1 111233444567898889999999999998776533
No 12
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.28 E-value=0.26 Score=46.34 Aligned_cols=164 Identities=19% Similarity=0.235 Sum_probs=106.6
Q ss_pred chhHHHHHHHHHHHHHHHhcCCCCCCCCCccceEEEeCCCCchhhhhhcccC-CCCCEEEEecc-hhHHHHHHHHHhccc
Q 021386 56 RGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEG-KAPHLYVELDF-IEVTSKKAALIETHG 133 (313)
Q Consensus 56 rG~~~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~-~~~~~~~EvD~-p~vi~~K~~~i~~~~ 133 (313)
||.-.|-..+..+|.+.+..-... .+..-||.+.||-=---+-..... .......=.|+ |..++.=+++|++..
T Consensus 110 rGIR~Rk~~l~~~i~~ai~~L~~~----g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~g 185 (311)
T PF12147_consen 110 RGIRQRKVHLEELIRQAIARLREQ----GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERG 185 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcC
Confidence 556678888888888877652110 026889999999643333322221 11245556666 566677777777642
Q ss_pred cchhhhcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHH-HHHHHHHHHhcC
Q 021386 134 ELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDS-SRAIVGWASKTF 212 (313)
Q Consensus 134 ~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~-~~~ll~~la~~f 212 (313)
. .+-.++.-.|..|.+.+.. + .-.|||.|.-|+.-|++..+ +.+.|+.+++..
T Consensus 186 L-------------------~~i~~f~~~dAfd~~~l~~------l-~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al 239 (311)
T PF12147_consen 186 L-------------------EDIARFEQGDAFDRDSLAA------L-DPAPTLAIVSGLYELFPDNDLVRRSLAGLARAL 239 (311)
T ss_pred C-------------------ccceEEEecCCCCHhHhhc------c-CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHh
Confidence 1 3345788888888654432 2 34899999999999999966 778899999988
Q ss_pred CCcEEEEEe-c----------------ccCCccccccCCCCHHHHHHHHHHcCCce
Q 021386 213 STAVFFLYE-Q----------------SRGCALLGINATPTLLAKEKLFLDQGWQQ 251 (313)
Q Consensus 213 ~~~~~i~ye-~----------------~rg~~l~~~~~~~t~~~q~~Rf~~~Gw~~ 251 (313)
+++.+++|- | .-|.++ ++...|-.++-+-+..+||+.
T Consensus 240 ~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~W--vMRrRsq~EmD~Lv~~aGF~K 293 (311)
T PF12147_consen 240 EPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAW--VMRRRSQAEMDQLVEAAGFEK 293 (311)
T ss_pred CCCcEEEEcCCCCCcchHHHHHHHhcccCCCce--EEEecCHHHHHHHHHHcCCch
Confidence 766666663 2 122343 445666666666677777764
No 13
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=96.19 E-value=0.19 Score=47.92 Aligned_cols=139 Identities=14% Similarity=0.189 Sum_probs=87.9
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~ 166 (313)
..|+-+|||.=...+++...+ ...++-||....+-.+.+.+.+. .+. ..+.+++.+|+.+
T Consensus 124 ~~VLDIGCG~G~~~~~la~~g--~~~V~GiD~S~~~l~q~~a~~~~------~~~------------~~~i~~~~~d~e~ 183 (322)
T PRK15068 124 RTVLDVGCGNGYHMWRMLGAG--AKLVVGIDPSQLFLCQFEAVRKL------LGN------------DQRAHLLPLGIEQ 183 (322)
T ss_pred CEEEEeccCCcHHHHHHHHcC--CCEEEEEcCCHHHHHHHHHHHHh------cCC------------CCCeEEEeCCHHH
Confidence 679999999999999987652 33588888766544443333321 110 2467788888765
Q ss_pred chhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec----c---------cCCcccccc
Q 021386 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ----S---------RGCALLGIN 232 (313)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~----~---------rg~~l~~~~ 232 (313)
.. + ...--++++-+|+.++.. ...+|+.+.+.. |+|.+++=.. . +-..++++.
T Consensus 184 lp----------~-~~~FD~V~s~~vl~H~~d--p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~ 250 (322)
T PRK15068 184 LP----------A-LKAFDTVFSMGVLYHRRS--PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVY 250 (322)
T ss_pred CC----------C-cCCcCEEEECChhhccCC--HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccce
Confidence 42 1 112236677788887643 346777777766 6676654111 1 111233334
Q ss_pred CCCCHHHHHHHHHHcCCceeEEcCHH
Q 021386 233 ATPTLLAKEKLFLDQGWQQAVAWDML 258 (313)
Q Consensus 233 ~~~t~~~q~~Rf~~~Gw~~~~~~dm~ 258 (313)
-.||.+...+.+.++||+.+.+.+..
T Consensus 251 ~lps~~~l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 251 FIPSVPALKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred eCCCHHHHHHHHHHcCCceEEEEeCC
Confidence 45789999999999999998877654
No 14
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=95.86 E-value=0.65 Score=43.70 Aligned_cols=122 Identities=14% Similarity=0.089 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHH-H-HHHHHHhccccchhhhcc
Q 021386 64 ALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVT-S-KKAALIETHGELKDKVGV 141 (313)
Q Consensus 64 ~id~~v~~fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi-~-~K~~~i~~~~~l~~~~g~ 141 (313)
.++....++.+..+. ...||-||||.=...-.|......+..|+=||..+-+ + .++++-...|
T Consensus 49 il~~~~~~ia~~~~~-------~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-------- 113 (301)
T TIGR03438 49 ILERHADEIAAATGA-------GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-------- 113 (301)
T ss_pred HHHHHHHHHHHhhCC-------CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC--------
Confidence 444445555444332 4679999999877665555431114678888885543 2 2222222111
Q ss_pred cccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEEecc-cccCChHHHHHHHHHHHhcC-CCcEEE
Q 021386 142 TASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECV-LIYLDPDSSRAIVGWASKTF-STAVFF 218 (313)
Q Consensus 142 ~~~~~~~~~~l~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egv-l~YL~~~~~~~ll~~la~~f-~~~~~i 218 (313)
.-+...+.+|+.+...+ +. ..+ +.+.++++-|. +..+++++..++|+.+.+.. |++.++
T Consensus 114 ------------~~~v~~i~gD~~~~~~~---~~--~~~-~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~l 174 (301)
T TIGR03438 114 ------------QLEVHGICADFTQPLAL---PP--EPA-AGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLL 174 (301)
T ss_pred ------------CceEEEEEEcccchhhh---hc--ccc-cCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 22456678898873111 11 122 34677777665 55689999999999998877 567766
No 15
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.76 E-value=0.13 Score=46.49 Aligned_cols=97 Identities=16% Similarity=0.192 Sum_probs=74.6
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
..+||-+|+|.=.....+... .|+++++=+|+|+|++.=.+ .+++.+++.|+.
T Consensus 101 ~~~vvDvGGG~G~~~~~l~~~-~P~l~~~v~Dlp~v~~~~~~--------------------------~~rv~~~~gd~f 153 (241)
T PF00891_consen 101 FKTVVDVGGGSGHFAIALARA-YPNLRATVFDLPEVIEQAKE--------------------------ADRVEFVPGDFF 153 (241)
T ss_dssp SSEEEEET-TTSHHHHHHHHH-STTSEEEEEE-HHHHCCHHH--------------------------TTTEEEEES-TT
T ss_pred ccEEEeccCcchHHHHHHHHH-CCCCcceeeccHhhhhcccc--------------------------ccccccccccHH
Confidence 578999999999998888766 58999999999999765443 258999999998
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCC-C--cEEEEEec
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-T--AVFFLYEQ 222 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~-~--~~~i~ye~ 222 (313)
+. +.. -=+++.=-||...+++++..||+.++...+ + +.+++.|+
T Consensus 154 ~~-----------~P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 154 DP-----------LPV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp TC-----------CSS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEE
T ss_pred hh-----------hcc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEee
Confidence 42 211 336777788999999999999999999884 4 68888887
No 16
>PLN02244 tocopherol O-methyltransferase
Probab=95.49 E-value=0.76 Score=44.07 Aligned_cols=142 Identities=15% Similarity=0.097 Sum_probs=83.0
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
...|+-+|||.=.....|... .+..++=||.-+.+..+.+...+.. | ..++..++.+|..
T Consensus 119 ~~~VLDiGCG~G~~~~~La~~--~g~~v~gvD~s~~~i~~a~~~~~~~------g------------~~~~v~~~~~D~~ 178 (340)
T PLN02244 119 PKRIVDVGCGIGGSSRYLARK--YGANVKGITLSPVQAARANALAAAQ------G------------LSDKVSFQVADAL 178 (340)
T ss_pred CCeEEEecCCCCHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhc------C------------CCCceEEEEcCcc
Confidence 467999999998877777654 2456777777555444433322110 1 0346778888876
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec-cc----C-Cccc---------
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ-SR----G-CALL--------- 229 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~-~r----g-~~l~--------- 229 (313)
+.. +..+.--++++-.++.+++. ..++++.+.... |+|.+++.+. .+ + ..+.
T Consensus 179 ~~~----------~~~~~FD~V~s~~~~~h~~d--~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~ 246 (340)
T PLN02244 179 NQP----------FEDGQFDLVWSMESGEHMPD--KRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDK 246 (340)
T ss_pred cCC----------CCCCCccEEEECCchhccCC--HHHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHH
Confidence 642 11122235555555666653 346677666655 6777776543 00 0 0010
Q ss_pred -----cccCCCCHHHHHHHHHHcCCceeEEcCHHH
Q 021386 230 -----GINATPTLLAKEKLFLDQGWQQAVAWDMLR 259 (313)
Q Consensus 230 -----~~~~~~t~~~q~~Rf~~~Gw~~~~~~dm~~ 259 (313)
....+.+.+...+.++++||..+...|..+
T Consensus 247 i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~ 281 (340)
T PLN02244 247 ICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSE 281 (340)
T ss_pred HHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcH
Confidence 011234788888999999999988665543
No 17
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=94.87 E-value=1.2 Score=39.54 Aligned_cols=134 Identities=14% Similarity=0.183 Sum_probs=77.6
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL 164 (313)
...|+-+|||.=.....+... +..++=+|. |+++..=++.+... + ...+..++.+|+
T Consensus 56 ~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~-------~------------~~~~i~~~~~d~ 113 (219)
T TIGR02021 56 GKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGR-------D------------VAGNVEFEVNDL 113 (219)
T ss_pred CCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhc-------C------------CCCceEEEECCh
Confidence 468999999998776666544 234555554 33333222222211 0 023566777776
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEEEEecc--------------cCCcccc
Q 021386 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQS--------------RGCALLG 230 (313)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~~--------------rg~~l~~ 230 (313)
.+.+ ...-++++-.++.|++++....+++.+.....++.++.+-+. .+.+-..
T Consensus 114 ~~~~-------------~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (219)
T TIGR02021 114 LSLC-------------GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPKTAWLAFLKMIGELFPGSSRAT 180 (219)
T ss_pred hhCC-------------CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhhCcCccccc
Confidence 5531 223355555567888888888888888775555555554330 0001001
Q ss_pred ccCCCCHHHHHHHHHHcCCceeEE
Q 021386 231 INATPTLLAKEKLFLDQGWQQAVA 254 (313)
Q Consensus 231 ~~~~~t~~~q~~Rf~~~Gw~~~~~ 254 (313)
-..+.+++...+-+.++||+....
T Consensus 181 ~~~~~~~~~~~~~l~~~Gf~v~~~ 204 (219)
T TIGR02021 181 SAYLHPMTDLERALGELGWKIVRE 204 (219)
T ss_pred ceEEecHHHHHHHHHHcCceeeee
Confidence 112447788888889999998764
No 18
>PLN03075 nicotianamine synthase; Provisional
Probab=94.69 E-value=0.63 Score=43.92 Aligned_cols=190 Identities=12% Similarity=0.196 Sum_probs=103.9
Q ss_pred CCCCchhHHhhhcCCCcCCccccchhHHHHHHHHHHHHHHHhcCCCCCCCCCccceEEEeCCC-CchhhhhhcccCCCCC
Q 021386 33 GYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAG-FDTTYFQLQAEGKAPH 111 (313)
Q Consensus 33 gy~~Dpfa~~fv~~~~rr~P~inrG~~~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGAG-lDTr~~RL~~~~~~~~ 111 (313)
|.++-.|+..+.........+-+.-||-+..-+..+--++|...... +..+|+-+||| .=-...-+.....++.
T Consensus 76 ~~lE~~~a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~-----~p~~VldIGcGpgpltaiilaa~~~p~~ 150 (296)
T PLN03075 76 GLLEAHFSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNG-----VPTKVAFVGSGPLPLTSIVLAKHHLPTT 150 (296)
T ss_pred HHHHHHHHHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhcC-----CCCEEEEECCCCcHHHHHHHHHhcCCCC
Confidence 67788888888854322222333456666666666555555443211 15789999999 4223333332212455
Q ss_pred EEEEecchhHHHHHH-HHHhccccchhhhcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEEe
Q 021386 112 LYVELDFIEVTSKKA-ALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAE 190 (313)
Q Consensus 112 ~~~EvD~p~vi~~K~-~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~E 190 (313)
++.-+|.-+-...+. +.+.+.+.+ .++.++.-.|+.+... ....--.+|+.
T Consensus 151 ~~~giD~d~~ai~~Ar~~~~~~~gL------------------~~rV~F~~~Da~~~~~---------~l~~FDlVF~~- 202 (296)
T PLN03075 151 SFHNFDIDPSANDVARRLVSSDPDL------------------SKRMFFHTADVMDVTE---------SLKEYDVVFLA- 202 (296)
T ss_pred EEEEEeCCHHHHHHHHHHhhhccCc------------------cCCcEEEECchhhccc---------ccCCcCEEEEe-
Confidence 666666633333333 333221221 5678888888876310 01123367777
Q ss_pred cccccCChHHHHHHHHHHHhcCCCcEEEEEecccCCccccccCCCCHHHHHHHHHHcCCceeEE-cCHHHHHhc
Q 021386 191 CVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALLGINATPTLLAKEKLFLDQGWQQAVA-WDMLRVYST 263 (313)
Q Consensus 191 gvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~~rg~~l~~~~~~~t~~~q~~Rf~~~Gw~~~~~-~dm~~~y~~ 263 (313)
++.|++++.-.++++.+.+....+.++++-. +-.+.+ --||..+...-| ||+.... ..-.++.|+
T Consensus 203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~--~~G~r~-~LYp~v~~~~~~----gf~~~~~~~P~~~v~Ns 268 (296)
T PLN03075 203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS--AHGARA-FLYPVVDPCDLR----GFEVLSVFHPTDEVINS 268 (296)
T ss_pred -cccccccccHHHHHHHHHHhcCCCcEEEEec--ccchHh-hcCCCCChhhCC----CeEEEEEECCCCCceee
Confidence 9999999999999999999775444444322 112222 136654333222 8986543 222334443
No 19
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=94.59 E-value=0.98 Score=43.50 Aligned_cols=140 Identities=12% Similarity=0.060 Sum_probs=82.6
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~ 166 (313)
..|+-||||.=.....+... .+...++=+|..+.+-.+.+.... ..+..++..|+.+
T Consensus 115 ~~VLDLGcGtG~~~l~La~~-~~~~~VtgVD~S~~mL~~A~~k~~----------------------~~~i~~i~gD~e~ 171 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKH-VDAKNVTILDQSPHQLAKAKQKEP----------------------LKECKIIEGDAED 171 (340)
T ss_pred CEEEEEecCCcHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHhhh----------------------ccCCeEEeccHHh
Confidence 57999999986655555332 123466677774433222221110 1234556666654
Q ss_pred chhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEecccCC-----cccc-ccCCCCHHH
Q 021386 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQSRGC-----ALLG-INATPTLLA 239 (313)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~~rg~-----~l~~-~~~~~t~~~ 239 (313)
. ++..+.--++++-+++.|++.. .++++.+.+.. |+|.+++-++.... .+.. ...+++.++
T Consensus 172 l----------p~~~~sFDvVIs~~~L~~~~d~--~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eE 239 (340)
T PLN02490 172 L----------PFPTDYADRYVSAGSIEYWPDP--QRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEE 239 (340)
T ss_pred C----------CCCCCceeEEEEcChhhhCCCH--HHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHH
Confidence 2 2322334467888888888754 35777777755 67777665541000 0000 113678899
Q ss_pred HHHHHHHcCCceeEEcCHHHHH
Q 021386 240 KEKLFLDQGWQQAVAWDMLRVY 261 (313)
Q Consensus 240 q~~Rf~~~Gw~~~~~~dm~~~y 261 (313)
..+.+.++||+.+...++...|
T Consensus 240 l~~lL~~aGF~~V~i~~i~~~~ 261 (340)
T PLN02490 240 YIEWFTKAGFKDVKLKRIGPKW 261 (340)
T ss_pred HHHHHHHCCCeEEEEEEcChhh
Confidence 9999999999998877765544
No 20
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=94.58 E-value=1.5 Score=39.00 Aligned_cols=138 Identities=12% Similarity=0.112 Sum_probs=75.6
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
..|+-+|||.=.....+.....+...++=+|. |+.++.=++.+... ..++..++..|..
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------------~~~~v~~~~~d~~ 106 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA--------------------GLHNVELVHGNAM 106 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc--------------------CCCceEEEEechh
Confidence 57999999987766666543113456666776 44444333333321 0245677777765
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEeccc-C---------------Ccc
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQSR-G---------------CAL 228 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~~r-g---------------~~l 228 (313)
+.+ +....+| ++++-.++-+++. ..++++.+.+.. |+|.+++.+... . .|+
T Consensus 107 ~~~-----~~~~~fD-----~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~ 174 (231)
T TIGR02752 107 ELP-----FDDNSFD-----YVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPL 174 (231)
T ss_pred cCC-----CCCCCcc-----EEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHH
Confidence 532 1111122 3344344555543 245666665544 567776665410 0 111
Q ss_pred ----------------ccccCCCCHHHHHHHHHHcCCceeEEcC
Q 021386 229 ----------------LGINATPTLLAKEKLFLDQGWQQAVAWD 256 (313)
Q Consensus 229 ----------------~~~~~~~t~~~q~~Rf~~~Gw~~~~~~d 256 (313)
.++..|++.++..+.+.++||+.+....
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~ 218 (231)
T TIGR02752 175 FGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAGFKDVEVKS 218 (231)
T ss_pred hhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcCCCeeEEEE
Confidence 1234577888888888999998776543
No 21
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=94.37 E-value=3.4 Score=36.49 Aligned_cols=136 Identities=15% Similarity=0.180 Sum_probs=79.6
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL 164 (313)
...|+-+|||.=.....|... +..+.=+|. |.+++.=++.+... +. ..+.+++.+|+
T Consensus 64 ~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~-------~~------------~~~i~~~~~d~ 121 (230)
T PRK07580 64 GLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEA-------GL------------AGNITFEVGDL 121 (230)
T ss_pred CCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhc-------CC------------ccCcEEEEcCc
Confidence 357999999988776666544 234555665 33333322233221 10 24566777774
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEEEEeccc---------CCccccc----
Q 021386 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSR---------GCALLGI---- 231 (313)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~~r---------g~~l~~~---- 231 (313)
... ...+| ++++-.++.+++.+....+++.+.+..+++.++.+.+.. +..+++.
T Consensus 122 ~~~--------~~~fD-----~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (230)
T PRK07580 122 ESL--------LGRFD-----TVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFTFAPYTPLLALLHWIGGLFPGPSRTT 188 (230)
T ss_pred hhc--------cCCcC-----EEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEEECCccHHHHHHHHhccccCCccCCC
Confidence 321 11233 566667777888889999999998876666666665410 0001110
Q ss_pred -cCCCCHHHHHHHHHHcCCceeEEcC
Q 021386 232 -NATPTLLAKEKLFLDQGWQQAVAWD 256 (313)
Q Consensus 232 -~~~~t~~~q~~Rf~~~Gw~~~~~~d 256 (313)
..+.+.++..+.+.++||+......
T Consensus 189 ~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 189 RIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred CccccCHHHHHHHHHHCCCceEeeee
Confidence 1233566777788899999877544
No 22
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=94.10 E-value=1.6 Score=41.63 Aligned_cols=137 Identities=15% Similarity=0.133 Sum_probs=80.2
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHH-HHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKA-ALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~-~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL 164 (313)
...|+-+|||.=.....|... +..++=+|+-+.+-... +..... +.. .....+..+...|+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~-------~~~--------~~~~~~~~f~~~Dl 206 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEA-------LAA--------LPPEVLPKFEANDL 206 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhc-------ccc--------cccccceEEEEcch
Confidence 368999999997776666654 45677777755432222 222210 000 00023455666676
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEEEEec---------ccCCccccc----
Q 021386 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQ---------SRGCALLGI---- 231 (313)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~---------~rg~~l~~~---- 231 (313)
.+. . ..+| ++++-.++.+++.+....+++++...-+++.++.+.+ ..+..+++-
T Consensus 207 ~~l-------~-~~fD-----~Vv~~~vL~H~p~~~~~~ll~~l~~l~~g~liIs~~p~~~~~~~l~~~g~~~~g~~~~~ 273 (315)
T PLN02585 207 ESL-------S-GKYD-----TVTCLDVLIHYPQDKADGMIAHLASLAEKRLIISFAPKTLYYDILKRIGELFPGPSKAT 273 (315)
T ss_pred hhc-------C-CCcC-----EEEEcCEEEecCHHHHHHHHHHHHhhcCCEEEEEeCCcchHHHHHHHHHhhcCCCCcCc
Confidence 431 1 1244 5666677778888888899999988666666666644 112222221
Q ss_pred cCC-CCHHHHHHHHHHcCCceeE
Q 021386 232 NAT-PTLLAKEKLFLDQGWQQAV 253 (313)
Q Consensus 232 ~~~-~t~~~q~~Rf~~~Gw~~~~ 253 (313)
..| .+.++..+.+.++||+...
T Consensus 274 r~y~~s~eel~~lL~~AGf~v~~ 296 (315)
T PLN02585 274 RAYLHAEADVERALKKAGWKVAR 296 (315)
T ss_pred eeeeCCHHHHHHHHHHCCCEEEE
Confidence 123 3677777788899999765
No 23
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=94.00 E-value=2.6 Score=37.24 Aligned_cols=160 Identities=12% Similarity=0.122 Sum_probs=90.9
Q ss_pred eEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHH-HHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 021386 88 QILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSK-KAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (313)
Q Consensus 88 QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~-K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~ 166 (313)
.|+-+|||.=.....+... .++..++-+|....+.. =++.+... |. ..+.+++..|+.+
T Consensus 2 ~vLDiGcG~G~~~~~la~~-~~~~~v~gid~s~~~~~~a~~~~~~~-------gl------------~~~i~~~~~d~~~ 61 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAER-HPHLQLHGYTISPEQAEVGRERIRAL-------GL------------QGRIRIFYRDSAK 61 (224)
T ss_pred eEEEECCCCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHhc-------CC------------CcceEEEeccccc
Confidence 4899999987766666544 24567777777433322 22222221 11 3466778888754
Q ss_pred chhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEeccc--CCcc--c-cccCCCCHHHH
Q 021386 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQSR--GCAL--L-GINATPTLLAK 240 (313)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~~r--g~~l--~-~~~~~~t~~~q 240 (313)
.. + . ..+| ++++-.++..++. ...+++.+.+.. |+|.+++-+... ..+. . ....+++.+..
T Consensus 62 ~~-~----~-~~fD-----~I~~~~~l~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~~~~ 128 (224)
T smart00828 62 DP-F----P-DTYD-----LVFGFEVIHHIKD--KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTREEW 128 (224)
T ss_pred CC-C----C-CCCC-----EeehHHHHHhCCC--HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCHHHH
Confidence 21 1 1 1233 5556555666643 467888887755 677777655410 1111 0 11126677888
Q ss_pred HHHHHHcCCceeEEcCHHHHHhcCC-C---HHHHHHHhhccCCCc
Q 021386 241 EKLFLDQGWQQAVAWDMLRVYSTFI-N---PQERRRIERLELFDE 281 (313)
Q Consensus 241 ~~Rf~~~Gw~~~~~~dm~~~y~~~l-~---~~er~ri~~lE~fDE 281 (313)
.+.+.+.||+.....++..=|..++ . .+.+.++.++ .+||
T Consensus 129 ~~~l~~~Gf~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~~-~~~~ 172 (224)
T smart00828 129 AELLARNNLRVVEGVDASLEIANFLYDPGFEDNLERLYQD-DLDE 172 (224)
T ss_pred HHHHHHCCCeEEEeEECcHhHhhhccChhHHHHHHHhccc-cchH
Confidence 8888999999988877766554433 1 2233444444 4676
No 24
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=93.61 E-value=0.88 Score=41.35 Aligned_cols=37 Identities=14% Similarity=0.086 Sum_probs=22.6
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHH
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTS 123 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~ 123 (313)
..|+-||||.=.....+...-.++..++=+|+.+-+-
T Consensus 49 ~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML 85 (233)
T PF01209_consen 49 DRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGML 85 (233)
T ss_dssp -EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHH
T ss_pred CEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHH
Confidence 6899999999877777654312456888899854443
No 25
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=93.55 E-value=1.5 Score=43.67 Aligned_cols=134 Identities=22% Similarity=0.247 Sum_probs=84.5
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~ 166 (313)
..|+-||||.=.....|... ...++=||.-..+-.+.+.... ...+..++.+|+.+
T Consensus 39 ~~vLDlGcG~G~~~~~la~~---~~~v~giD~s~~~l~~a~~~~~---------------------~~~~i~~~~~d~~~ 94 (475)
T PLN02336 39 KSVLELGAGIGRFTGELAKK---AGQVIALDFIESVIKKNESING---------------------HYKNVKFMCADVTS 94 (475)
T ss_pred CEEEEeCCCcCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHhc---------------------cCCceEEEEecccc
Confidence 47999999988776666554 2355666663333322222111 02456778888865
Q ss_pred chhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEecc---cC--CccccccCCCCHHHH
Q 021386 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQS---RG--CALLGINATPTLLAK 240 (313)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~~---rg--~~l~~~~~~~t~~~q 240 (313)
.. + .+..+..-++++..+++|++.+...++++.+.+.. |+|.+++.|.. .+ .....-..|.+....
T Consensus 95 ~~-~-------~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 166 (475)
T PLN02336 95 PD-L-------NISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFY 166 (475)
T ss_pred cc-c-------CCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccccCCCCeecChHHH
Confidence 31 1 23334556899999999999998999999988866 67777776651 01 011122346677777
Q ss_pred HHHHHHcCCcee
Q 021386 241 EKLFLDQGWQQA 252 (313)
Q Consensus 241 ~~Rf~~~Gw~~~ 252 (313)
.+-|.++|+...
T Consensus 167 ~~~f~~~~~~~~ 178 (475)
T PLN02336 167 TKVFKECHTRDE 178 (475)
T ss_pred HHHHHHheeccC
Confidence 777889897654
No 26
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=93.53 E-value=2.8 Score=39.78 Aligned_cols=148 Identities=16% Similarity=0.210 Sum_probs=95.7
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~ 166 (313)
+-|+-+|||-==-.||+...+ .-.++=+|--...-..-+.+++ .+|. ....+.+|.-+.+
T Consensus 117 k~VLDIGC~nGY~~frM~~~G--A~~ViGiDP~~lf~~QF~~i~~------~lg~------------~~~~~~lplgvE~ 176 (315)
T PF08003_consen 117 KRVLDIGCNNGYYSFRMLGRG--AKSVIGIDPSPLFYLQFEAIKH------FLGQ------------DPPVFELPLGVED 176 (315)
T ss_pred CEEEEecCCCcHHHHHHhhcC--CCEEEEECCChHHHHHHHHHHH------HhCC------------CccEEEcCcchhh
Confidence 689999999988899998764 3446677754443333334443 3332 2345556544444
Q ss_pred chhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec--------------ccCCccccc
Q 021386 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ--------------SRGCALLGI 231 (313)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~--------------~rg~~l~~~ 231 (313)
.. . + ..|| ++++=|||+.+... .. .|..+.+.. ++|.++. |- .|-..|+++
T Consensus 177 Lp---~-~--~~FD-----tVF~MGVLYHrr~P-l~-~L~~Lk~~L~~gGeLvL-ETlvi~g~~~~~L~P~~rYa~m~nv 242 (315)
T PF08003_consen 177 LP---N-L--GAFD-----TVFSMGVLYHRRSP-LD-HLKQLKDSLRPGGELVL-ETLVIDGDENTVLVPEDRYAKMRNV 242 (315)
T ss_pred cc---c-c--CCcC-----EEEEeeehhccCCH-HH-HHHHHHHhhCCCCEEEE-EEeeecCCCceEEccCCcccCCCce
Confidence 32 1 1 1366 78889999987433 33 344444433 5666653 32 577888888
Q ss_pred cCCCCHHHHHHHHHHcCCceeEEcCHHHHHhcCCCHHHHHHH
Q 021386 232 NATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRI 273 (313)
Q Consensus 232 ~~~~t~~~q~~Rf~~~Gw~~~~~~dm~~~y~~~l~~~er~ri 273 (313)
---||+......+.++||+.+.+.|.. ..+.+|.++-
T Consensus 243 ~FiPs~~~L~~wl~r~gF~~v~~v~~~-----~Tt~~EQR~T 279 (315)
T PF08003_consen 243 WFIPSVAALKNWLERAGFKDVRCVDVS-----PTTIEEQRKT 279 (315)
T ss_pred EEeCCHHHHHHHHHHcCCceEEEecCc-----cCCHHHhccC
Confidence 889999999999999999999987763 3445555444
No 27
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=93.03 E-value=2.3 Score=38.01 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=102.2
Q ss_pred HHHHHHHHHhcCCCCCCCCCccceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHH-Hhccccchhhhcccc
Q 021386 65 LRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAAL-IETHGELKDKVGVTA 143 (313)
Q Consensus 65 id~~v~~fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~-i~~~~~l~~~~g~~~ 143 (313)
|-.++.++|.... ..|+-+|+|.=.-+-.+... .+.++|-=-|..+....-... +... .+
T Consensus 14 Il~vL~~~l~~~~---------~~vLEiaSGtGqHa~~FA~~-lP~l~WqPSD~~~~~~~sI~a~~~~~-~~-------- 74 (204)
T PF06080_consen 14 ILEVLKQYLPDSG---------TRVLEIASGTGQHAVYFAQA-LPHLTWQPSDPDDNLRPSIRAWIAEA-GL-------- 74 (204)
T ss_pred HHHHHHHHhCccC---------ceEEEEcCCccHHHHHHHHH-CCCCEEcCCCCChHHHhhHHHHHHhc-CC--------
Confidence 3456777775431 25999999998775555444 578999988887776322222 2221 11
Q ss_pred cccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec
Q 021386 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ 222 (313)
Q Consensus 144 ~~~~~~~~l~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~ 222 (313)
+.-..-+..|+.+..|--. ..+++....--.+++==++-.++.+.+..|++..++.. +++.+++|-|
T Consensus 75 ----------~Nv~~P~~lDv~~~~w~~~--~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 75 ----------PNVRPPLALDVSAPPWPWE--LPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred ----------cccCCCeEeecCCCCCccc--cccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 1112336788887533111 11233445556777777889999999999999999977 5688889998
Q ss_pred --------------------ccCCccccccCCCCHHHHHHHHHHcCCceeEEcCH
Q 021386 223 --------------------SRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDM 257 (313)
Q Consensus 223 --------------------~rg~~l~~~~~~~t~~~q~~Rf~~~Gw~~~~~~dm 257 (313)
.|+ |-. .+.++++..+-..++|+......+|
T Consensus 143 F~~~G~~ts~SN~~FD~sLr~rd-p~~---GiRD~e~v~~lA~~~GL~l~~~~~M 193 (204)
T PF06080_consen 143 FNRDGKFTSESNAAFDASLRSRD-PEW---GIRDIEDVEALAAAHGLELEEDIDM 193 (204)
T ss_pred cccCCEeCCcHHHHHHHHHhcCC-CCc---CccCHHHHHHHHHHCCCccCccccc
Confidence 222 333 3667777777778889887665555
No 28
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=92.75 E-value=2 Score=38.05 Aligned_cols=131 Identities=15% Similarity=0.181 Sum_probs=74.8
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
.++++-||||-=--+..|... +..+.=+|.-++--.|.+.+.+... -..+...+||.
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~--------------------l~i~~~~~Dl~ 87 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEG--------------------LDIRTRVADLN 87 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT---------------------TEEEEE-BGC
T ss_pred CCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcC--------------------ceeEEEEecch
Confidence 579999999986667777765 4556666666655555555544221 13566778887
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEE--E-ec-ccCCccccccCCCCHHHH
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFL--Y-EQ-SRGCALLGINATPTLLAK 240 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~--y-e~-~rg~~l~~~~~~~t~~~q 240 (313)
+.+ ++ ..=-++++-+|++||+++...++++.+.+.. |+|-+++ + +. .-++|.+--..+ .+.+.
T Consensus 88 ~~~----------~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~~~~f~~-~~~EL 155 (192)
T PF03848_consen 88 DFD----------FP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPSPFPFLL-KPGEL 155 (192)
T ss_dssp CBS-----------T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS--S--B--TTHH
T ss_pred hcc----------cc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCCCCCccc-CHHHH
Confidence 742 21 1224788899999999999999999998755 5554433 2 11 234444321111 33444
Q ss_pred HHHHHHcCCceeE
Q 021386 241 EKLFLDQGWQQAV 253 (313)
Q Consensus 241 ~~Rf~~~Gw~~~~ 253 (313)
.+.|. ||+...
T Consensus 156 ~~~y~--dW~il~ 166 (192)
T PF03848_consen 156 REYYA--DWEILK 166 (192)
T ss_dssp HHHTT--TSEEEE
T ss_pred HHHhC--CCeEEE
Confidence 55554 798754
No 29
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=92.66 E-value=0.3 Score=37.74 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=54.0
Q ss_pred EEEeCCCCchhhhhhcccC--CCCCEEEEecchhHHHHHHH-HHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 89 ILSLGAGFDTTYFQLQAEG--KAPHLYVELDFIEVTSKKAA-LIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 89 VV~LGAGlDTr~~RL~~~~--~~~~~~~EvD~p~vi~~K~~-~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
|+.||||.=+....+.... .++.+++=||.-..+-...+ ..... ..+.+++..|+.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~---------------------~~~~~~~~~D~~ 59 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED---------------------GPKVRFVQADAR 59 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT---------------------TTTSEEEESCTT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc---------------------CCceEEEECCHh
Confidence 6788888855544443220 13467777776433322222 22110 126678999998
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEE-ecccccCChHHHHHHHHHHHhcC
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIA-ECVLIYLDPDSSRAIVGWASKTF 212 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~-Egvl~YL~~~~~~~ll~~la~~f 212 (313)
+.+ . . .....++++ -+++.|+++++..++++.+++..
T Consensus 60 ~l~---~------~-~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l 97 (101)
T PF13649_consen 60 DLP---F------S-DGKFDLVVCSGLSLHHLSPEELEALLRRIARLL 97 (101)
T ss_dssp CHH---H------H-SSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTE
T ss_pred HCc---c------c-CCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHh
Confidence 742 1 1 124455555 77799999999999999998864
No 30
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=92.25 E-value=3.8 Score=40.82 Aligned_cols=144 Identities=13% Similarity=0.099 Sum_probs=88.3
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
...|+-+|||.=.....|... .+..++=+|..+.+-...+. +. .+ ...+..++..|+.
T Consensus 267 ~~~vLDiGcG~G~~~~~la~~--~~~~v~gvDiS~~~l~~A~~--~~------~~------------~~~~v~~~~~d~~ 324 (475)
T PLN02336 267 GQKVLDVGCGIGGGDFYMAEN--FDVHVVGIDLSVNMISFALE--RA------IG------------RKCSVEFEVADCT 324 (475)
T ss_pred CCEEEEEeccCCHHHHHHHHh--cCCEEEEEECCHHHHHHHHH--Hh------hc------------CCCceEEEEcCcc
Confidence 357999999997766666554 25567777774332222111 00 01 0345677788876
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec--ccCCcccc--------ccCC
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ--SRGCALLG--------INAT 234 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~--~rg~~l~~--------~~~~ 234 (313)
+.. +....=-++++-+++.+++. ..++++.+.+.. |+|.+++-|. ..+.+-.. ...+
T Consensus 325 ~~~----------~~~~~fD~I~s~~~l~h~~d--~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~g~~~ 392 (475)
T PLN02336 325 KKT----------YPDNSFDVIYSRDTILHIQD--KPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFAEYIKQRGYDL 392 (475)
T ss_pred cCC----------CCCCCEEEEEECCcccccCC--HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHHHHHHhcCCCC
Confidence 532 22223457888888888864 347788887766 6677665443 11111100 0235
Q ss_pred CCHHHHHHHHHHcCCceeEEcCHHHHHhc
Q 021386 235 PTLLAKEKLFLDQGWQQAVAWDMLRVYST 263 (313)
Q Consensus 235 ~t~~~q~~Rf~~~Gw~~~~~~dm~~~y~~ 263 (313)
++.++..+.+.++||+.+.+.|+.+-|..
T Consensus 393 ~~~~~~~~~l~~aGF~~i~~~d~~~~~~~ 421 (475)
T PLN02336 393 HDVQAYGQMLKDAGFDDVIAEDRTDQFLQ 421 (475)
T ss_pred CCHHHHHHHHHHCCCeeeeeecchHHHHH
Confidence 68888899999999999988887776654
No 31
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=91.78 E-value=11 Score=35.89 Aligned_cols=114 Identities=16% Similarity=0.074 Sum_probs=68.1
Q ss_pred cceEEEeCCCCchhhhhhccc---CCCCCEEEEecchh-HHHHHHHHHh-ccccchhhhcccccccccCCcccCCCeEEE
Q 021386 86 KKQILSLGAGFDTTYFQLQAE---GKAPHLYVELDFIE-VTSKKAALIE-THGELKDKVGVTASISQAKGEVLGDNYKLL 160 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~---~~~~~~~~EvD~p~-vi~~K~~~i~-~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv 160 (313)
...+|-||||.=+---.|... ....++|+=||.-. .++.=.+.+. .. + +.=..+-+
T Consensus 77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~------~-------------p~l~v~~l 137 (319)
T TIGR03439 77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGN------F-------------SHVRCAGL 137 (319)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhcc------C-------------CCeEEEEE
Confidence 458999999965442222111 02467899888853 3333333333 10 0 01233457
Q ss_pred eccCCCchhHHHHHHhCCCCCCCCEEEEEec-ccccCChHHHHHHHHHHHh-cC-CCcEEEE-Eec
Q 021386 161 PVDLRDIQMLNEVINLANMDPSLPTFIIAEC-VLIYLDPDSSRAIVGWASK-TF-STAVFFL-YEQ 222 (313)
Q Consensus 161 ~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Eg-vl~YL~~~~~~~ll~~la~-~f-~~~~~i~-ye~ 222 (313)
.+|+.+. + ..|.. ...++.|.++++=| .+--++++++.++|+.+++ .. |++.+++ .|.
T Consensus 138 ~gdy~~~--l-~~l~~-~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~ 199 (319)
T TIGR03439 138 LGTYDDG--L-AWLKR-PENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDG 199 (319)
T ss_pred EecHHHH--H-hhccc-ccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCC
Confidence 7788764 1 11221 11245678899988 6789999999999999988 55 6666554 554
No 32
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=91.31 E-value=1.6 Score=41.81 Aligned_cols=178 Identities=13% Similarity=0.101 Sum_probs=98.3
Q ss_pred cceEEEeCC--CCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEecc
Q 021386 86 KKQILSLGA--GFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (313)
Q Consensus 86 ~~QVV~LGA--GlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~D 163 (313)
...|+-||| |-|..=|.-... ....-+|+....+-+.+.+.-+-...-++. .. . ..-...++.+|
T Consensus 63 ~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~-~~---------~-~~f~a~f~~~D 129 (331)
T PF03291_consen 63 GLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSK-QY---------R-FDFIAEFIAAD 129 (331)
T ss_dssp T-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-H-TS---------E-ECCEEEEEEST
T ss_pred CCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccc-cc---------c-ccchhheeccc
Confidence 578999999 589998887543 455567777777777777661110000000 00 0 01123566777
Q ss_pred CCCchhHHHHHHhCCCCCCCC-EEEEEecccccC--ChHHHHHHHHHHHhcC-CCcEEEE--Eec---------------
Q 021386 164 LRDIQMLNEVINLANMDPSLP-TFIIAECVLIYL--DPDSSRAIVGWASKTF-STAVFFL--YEQ--------------- 222 (313)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~P-Tl~i~Egvl~YL--~~~~~~~ll~~la~~f-~~~~~i~--ye~--------------- 222 (313)
.... .+...+. +...+ =++-+.-.+.|+ +++.++.+|+.+++.. |+|.||. .|.
T Consensus 130 ~f~~-~l~~~~~----~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~ 204 (331)
T PF03291_consen 130 CFSE-SLREKLP----PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSE 204 (331)
T ss_dssp TCCS-HHHCTSS----STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECC
T ss_pred cccc-hhhhhcc----ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhccccc
Confidence 6652 3333221 11122 366667777776 7888999999999977 6777775 232
Q ss_pred --ccCCc-------------cc----------cccCCC----CHHHHHHHHHHcCCceeEEcCHHHHHhcCC----CHHH
Q 021386 223 --SRGCA-------------LL----------GINATP----TLLAKEKLFLDQGWQQAVAWDMLRVYSTFI----NPQE 269 (313)
Q Consensus 223 --~rg~~-------------l~----------~~~~~~----t~~~q~~Rf~~~Gw~~~~~~dm~~~y~~~l----~~~e 269 (313)
..|-+ .- .+..+| ..+...+-+.++|++.+...+..++|+... ...-
T Consensus 205 ~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~F~ef~~e~~~~~~~~~l 284 (331)
T PF03291_consen 205 KKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKKNFHEFYEEEKNKYEKRSL 284 (331)
T ss_dssp CSCSETSSEEEEESCCSS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEEEHHHHHHHHCCCCHCHHH
T ss_pred ccccCCccEEEEecccCCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeCChHHHHHHhccCchhhHH
Confidence 00111 11 111121 246667778999999999999999998433 2334
Q ss_pred HHHHhhccCCCc
Q 021386 270 RRRIERLELFDE 281 (313)
Q Consensus 270 r~ri~~lE~fDE 281 (313)
..|...||..+.
T Consensus 285 ~~~~~~l~~~~~ 296 (331)
T PF03291_consen 285 LERMKALEKRPG 296 (331)
T ss_dssp HHCHGGG--SHH
T ss_pred HHHHHhhcCCCC
Confidence 566667766543
No 33
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=91.06 E-value=12 Score=34.33 Aligned_cols=108 Identities=16% Similarity=0.086 Sum_probs=57.9
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHH-HHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAA-LIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~-~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL 164 (313)
...|+-+|||.=.....+.....++..++=||.-+-+-...+ ....... + ...+.+++.+|.
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~-----~------------~~~~i~~~~~d~ 136 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK-----S------------CYKNIEWIEGDA 136 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh-----c------------cCCCeEEEEccc
Confidence 368999999997766666443113456777887444332221 1110000 0 034677788887
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec
Q 021386 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ 222 (313)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~ 222 (313)
.+.+ +..+.--++++-.++..++ ...++++.+.+.. |+|.+++.|.
T Consensus 137 ~~lp----------~~~~sfD~V~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~ 183 (261)
T PLN02233 137 TDLP----------FDDCYFDAITMGYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDF 183 (261)
T ss_pred ccCC----------CCCCCEeEEEEecccccCC--CHHHHHHHHHHHcCcCcEEEEEEC
Confidence 6542 2222223444444455554 2455677666655 6777777664
No 34
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=90.54 E-value=1.2 Score=40.80 Aligned_cols=140 Identities=19% Similarity=0.242 Sum_probs=87.4
Q ss_pred eEEEeCCCCchhhhhhcccC-CCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 021386 88 QILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (313)
Q Consensus 88 QVV~LGAGlDTr~~RL~~~~-~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~ 166 (313)
-|+-+|||-=-..|=|.... .+++..|-.|+..- =..+++++... ...+.+.-.+||..
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~---Ai~~vk~~~~~-----------------~e~~~~afv~Dlt~ 133 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPR---AIELVKKSSGY-----------------DESRVEAFVWDLTS 133 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChH---HHHHHHhcccc-----------------chhhhcccceeccc
Confidence 58899999988888876552 34599999999532 12244443221 13556667789988
Q ss_pred chhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec----------ccCCcc-------
Q 021386 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ----------SRGCAL------- 228 (313)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~----------~rg~~l------- 228 (313)
.+ +........+|...-++ ||.=++|+.-.+.|..+.+.. |+|.+++-|. ..+-.+
T Consensus 134 ~~-~~~~~~~~svD~it~IF-----vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVR 207 (264)
T KOG2361|consen 134 PS-LKEPPEEGSVDIITLIF-----VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVR 207 (264)
T ss_pred hh-ccCCCCcCccceEEEEE-----EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCCceeecceEEc
Confidence 54 33333333344333333 445567999999999999977 6777666343 111001
Q ss_pred -ccccC-CCCHHHHHHHHHHcCCceeE
Q 021386 229 -LGINA-TPTLLAKEKLFLDQGWQQAV 253 (313)
Q Consensus 229 -~~~~~-~~t~~~q~~Rf~~~Gw~~~~ 253 (313)
-|... |.+.+...+.|.++||..+.
T Consensus 208 gDGT~~YfF~~eeL~~~f~~agf~~~~ 234 (264)
T KOG2361|consen 208 GDGTRAYFFTEEELDELFTKAGFEEVQ 234 (264)
T ss_pred cCCceeeeccHHHHHHHHHhcccchhc
Confidence 12222 45778888899999998654
No 35
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=90.38 E-value=7.1 Score=36.33 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=75.5
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHH-HHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAA-LIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~-~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
..|+-+|||.=.....|... +..++=+|.....-.+.+ ..... .-+.+.+..|+.
T Consensus 122 ~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~---------------------~l~v~~~~~D~~ 177 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKE---------------------NLNIRTGLYDIN 177 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHc---------------------CCceEEEEechh
Confidence 58999999986666666544 345666666433222222 22210 114556666765
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec----ccCCccccccCCCCHHHH
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ----SRGCALLGINATPTLLAK 240 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~----~rg~~l~~~~~~~t~~~q 240 (313)
+.. + ...--++++.+++++++++....+++.+.+.. |+|.+++... ...++.+ .....+.++.
T Consensus 178 ~~~----------~-~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~~p-~~~~~~~~el 245 (287)
T PRK12335 178 SAS----------I-QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCPMP-FSFTFKEGEL 245 (287)
T ss_pred ccc----------c-cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCCCC-CCcccCHHHH
Confidence 521 1 12234788999999999999999999998866 5666444322 1222322 1223455555
Q ss_pred HHHHHHcCCceeEE
Q 021386 241 EKLFLDQGWQQAVA 254 (313)
Q Consensus 241 ~~Rf~~~Gw~~~~~ 254 (313)
.+.|. +|+....
T Consensus 246 ~~~~~--~~~i~~~ 257 (287)
T PRK12335 246 KDYYQ--DWEIVKY 257 (287)
T ss_pred HHHhC--CCEEEEE
Confidence 55554 5887654
No 36
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=90.24 E-value=6 Score=32.36 Aligned_cols=139 Identities=17% Similarity=0.132 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCCCCCCCCccceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccc
Q 021386 64 ALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA 143 (313)
Q Consensus 64 ~id~~v~~fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~ 143 (313)
.+.+.+.+++..... ...|+-+|||.=.....+... +..++=+|.-+.+-.+ .. .
T Consensus 8 ~~~~~~~~~~~~~~~-------~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~----~~-------~---- 62 (161)
T PF13489_consen 8 AYADLLERLLPRLKP-------GKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK----RN-------V---- 62 (161)
T ss_dssp CHHHHHHHHHTCTTT-------TSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH----TT-------S----
T ss_pred HHHHHHHHHhcccCC-------CCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh----hh-------h----
Confidence 344566666653322 578999999985544444433 3477788875554444 10 0
Q ss_pred cccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec
Q 021386 144 SISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ 222 (313)
Q Consensus 144 ~~~~~~~~l~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~ 222 (313)
.....+..+. . .....--++++-.|+.|++ ...++|+.+.+.. |+|.+++-++
T Consensus 63 --------------~~~~~~~~~~------~----~~~~~fD~i~~~~~l~~~~--d~~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 63 --------------VFDNFDAQDP------P----FPDGSFDLIICNDVLEHLP--DPEEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp --------------EEEEEECHTH------H----CHSSSEEEEEEESSGGGSS--HHHHHHHHHHHCEEEEEEEEEEEE
T ss_pred --------------hhhhhhhhhh------h----ccccchhhHhhHHHHhhcc--cHHHHHHHHHHhcCCCCEEEEEEc
Confidence 0011111110 0 1233556888889999998 4789999998877 5677666555
Q ss_pred ccC-----------Cccc--cccCCCCHHHHHHHHHHcCCceeE
Q 021386 223 SRG-----------CALL--GINATPTLLAKEKLFLDQGWQQAV 253 (313)
Q Consensus 223 ~rg-----------~~l~--~~~~~~t~~~q~~Rf~~~Gw~~~~ 253 (313)
.+. ..-. +...|-+.++..+.++++||+.++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 117 NRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp BTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred CCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 211 1111 233566888888889999998764
No 37
>PRK06202 hypothetical protein; Provisional
Probab=89.57 E-value=12 Score=33.50 Aligned_cols=134 Identities=12% Similarity=0.054 Sum_probs=72.9
Q ss_pred cceEEEeCCCCchhhhhhccc---CCCCCEEEEecch-hHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEe
Q 021386 86 KKQILSLGAGFDTTYFQLQAE---GKAPHLYVELDFI-EVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLP 161 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~---~~~~~~~~EvD~p-~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~ 161 (313)
...|+-||||.-.....|... ..++.+++=||.- ++++.=++.+.. .+..++.
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-----------------------~~~~~~~ 117 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-----------------------PGVTFRQ 117 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-----------------------CCCeEEE
Confidence 468999999998765555321 0135688899984 444332221111 1122222
Q ss_pred ccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEEEEeccc-----------------
Q 021386 162 VDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSR----------------- 224 (313)
Q Consensus 162 ~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~~r----------------- 224 (313)
.|..+.. ...+.--++++=.++.++++++..++++.+.+... +.+++-|..+
T Consensus 118 ~~~~~l~----------~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl~~~~~~~~~~~~~~~~~~~ 186 (232)
T PRK06202 118 AVSDELV----------AEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHNDLIRSRLAYALFWAGTRLLSR 186 (232)
T ss_pred Eeccccc----------ccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEeccccCHHHHHHHHHHHHHhcc
Confidence 2322211 01123346666667899988888888888887654 3333333311
Q ss_pred -----CCccccccCCCCHHHHHHHHHHcCCceeEE
Q 021386 225 -----GCALLGINATPTLLAKEKLFLDQGWQQAVA 254 (313)
Q Consensus 225 -----g~~l~~~~~~~t~~~q~~Rf~~~Gw~~~~~ 254 (313)
+-...++..++|.++..+-+.+ ||+....
T Consensus 187 ~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~ 220 (232)
T PRK06202 187 SSFVHTDGLLSVRRSYTPAELAALAPQ-GWRVERQ 220 (232)
T ss_pred CceeeccchHHHHhhcCHHHHHHHhhC-CCeEEec
Confidence 1122344556677777776666 7776543
No 38
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=89.02 E-value=15 Score=32.08 Aligned_cols=129 Identities=11% Similarity=0.084 Sum_probs=75.0
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
..|+-+|||.-.....|... +..++=+|. |..++.-++..... . -+.+...+|+.
T Consensus 32 ~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~-~--------------------~~v~~~~~d~~ 87 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARE-N--------------------LPLRTDAYDIN 87 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHh-C--------------------CCceeEeccch
Confidence 58999999998887777654 345566666 44444333333221 0 01334445553
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec------ccCCccccccCCCCHH
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ------SRGCALLGINATPTLL 238 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~------~rg~~l~~~~~~~t~~ 238 (313)
..+ ++ ..--++++-.++.+++++....+++.+.+.. |+|.+++.+. ..+.|. ..-.+.+
T Consensus 88 ~~~----------~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~~~---~~~~~~~ 153 (195)
T TIGR00477 88 AAA----------LN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHMPF---SFTFKED 153 (195)
T ss_pred hcc----------cc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCCCc---CccCCHH
Confidence 311 22 2345778888899999988899999988866 6676554432 111111 1123556
Q ss_pred HHHHHHHHcCCceeEEc
Q 021386 239 AKEKLFLDQGWQQAVAW 255 (313)
Q Consensus 239 ~q~~Rf~~~Gw~~~~~~ 255 (313)
...+.|. ||+.....
T Consensus 154 el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 154 ELRQYYA--DWELLKYN 168 (195)
T ss_pred HHHHHhC--CCeEEEee
Confidence 6666664 68876644
No 39
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=88.74 E-value=2.6 Score=32.54 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=65.0
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
..|+-||||.=.....+... .++.+++=||. |++++.=++.+.+. + ..++.+++..|+
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~-~~~~~v~gvD~s~~~~~~a~~~~~~~-------~------------~~~~i~~~~~d~- 61 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARL-FPGARVVGVDISPEMLEIARERAAEE-------G------------LSDRITFVQGDA- 61 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHH-HTTSEEEEEESSHHHHHHHHHHHHHT-------T------------TTTTEEEEESCC-
T ss_pred CEEEEEcCcCCHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHhc-------C------------CCCCeEEEECcc-
Confidence 56999999998887777662 13566676776 45554444444221 1 157899999998
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEec-ccc-cCChHHHHHHHHHHHhcC-CCcEEEE
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAEC-VLI-YLDPDSSRAIVGWASKTF-STAVFFL 219 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Eg-vl~-YL~~~~~~~ll~~la~~f-~~~~~i~ 219 (313)
... + -.....-++++-+ .+. |++.++..++++.+.+.. |++.+++
T Consensus 62 ~~~-~--------~~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 62 EFD-P--------DFLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp HGG-T--------TTSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccC-c--------ccCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 211 0 0122356777776 443 666688899999998876 5555543
No 40
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=88.24 E-value=24 Score=33.64 Aligned_cols=163 Identities=11% Similarity=0.017 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCccceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHH-HHhccccchhh
Q 021386 60 ARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAA-LIETHGELKDK 138 (313)
Q Consensus 60 ~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~-~i~~~~~l~~~ 138 (313)
.|...|+..+.+.+...... ........|+-+|||-=.....|... +..++=||.-.-+-...+ .....
T Consensus 107 ~R~~~i~~~l~~~~~~~~~~-~~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~------ 176 (322)
T PLN02396 107 TRLAFIRSTLCRHFSKDPSS-AKPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMD------ 176 (322)
T ss_pred HHHHHHHHHHHHHhccchhh-ccCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhc------
Confidence 46666666655554332100 00001347999999988776666543 456677776433222222 11110
Q ss_pred hcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEE
Q 021386 139 VGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVF 217 (313)
Q Consensus 139 ~g~~~~~~~~~~~l~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~ 217 (313)
+ ...+..++..|..+.. .....|| ++++=.|+..++.. ..+++.+.+.. |+|.+
T Consensus 177 -~------------~~~~i~~~~~dae~l~-----~~~~~FD-----~Vi~~~vLeHv~d~--~~~L~~l~r~LkPGG~l 231 (322)
T PLN02396 177 -P------------VTSTIEYLCTTAEKLA-----DEGRKFD-----AVLSLEVIEHVANP--AEFCKSLSALTIPNGAT 231 (322)
T ss_pred -C------------cccceeEEecCHHHhh-----hccCCCC-----EEEEhhHHHhcCCH--HHHHHHHHHHcCCCcEE
Confidence 0 0235666776654321 1111233 55555577777643 46788887766 67777
Q ss_pred EEEecccC-----------------Ccc--ccccCCCCHHHHHHHHHHcCCceeEEcCH
Q 021386 218 FLYEQSRG-----------------CAL--LGINATPTLLAKEKLFLDQGWQQAVAWDM 257 (313)
Q Consensus 218 i~ye~~rg-----------------~~l--~~~~~~~t~~~q~~Rf~~~Gw~~~~~~dm 257 (313)
++-...+. .|- .....|.++++..+.+.++||+.....-|
T Consensus 232 iist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~G~ 290 (322)
T PLN02396 232 VLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMAGF 290 (322)
T ss_pred EEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEeee
Confidence 65443111 111 01124678899999999999998775443
No 41
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=88.07 E-value=11 Score=33.44 Aligned_cols=110 Identities=17% Similarity=0.173 Sum_probs=65.4
Q ss_pred HHHHHHhcCCCCCCCCCccceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccc
Q 021386 68 LLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQ 147 (313)
Q Consensus 68 ~v~~fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~ 147 (313)
.+.+++...+. ...|+-+|||.=.....|... .++..++=||.-+.+-...+- +.
T Consensus 33 ~~~~~l~~~~~-------~~~VLDiGCG~G~~~~~L~~~-~~~~~v~giDiS~~~l~~A~~--~~--------------- 87 (204)
T TIGR03587 33 MFARALNRLPK-------IASILELGANIGMNLAALKRL-LPFKHIYGVEINEYAVEKAKA--YL--------------- 87 (204)
T ss_pred HHHHHHHhcCC-------CCcEEEEecCCCHHHHHHHHh-CCCCeEEEEECCHHHHHHHHh--hC---------------
Confidence 34555554433 457999999998776666443 135567777764433322221 00
Q ss_pred cCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEEEEe
Q 021386 148 AKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYE 221 (313)
Q Consensus 148 ~~~~l~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ye 221 (313)
.+..++..|+.+. +....=-++++-+|+.+++++...++++.+.+... ..+++.|
T Consensus 88 -------~~~~~~~~d~~~~-----------~~~~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~~-~~v~i~e 142 (204)
T TIGR03587 88 -------PNINIIQGSLFDP-----------FKDNFFDLVLTKGVLIHINPDNLPTAYRELYRCSN-RYILIAE 142 (204)
T ss_pred -------CCCcEEEeeccCC-----------CCCCCEEEEEECChhhhCCHHHHHHHHHHHHhhcC-cEEEEEE
Confidence 1123445565441 22233457889999999999999999999988653 3444434
No 42
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=88.02 E-value=21 Score=32.61 Aligned_cols=137 Identities=14% Similarity=0.149 Sum_probs=75.0
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL 164 (313)
...|+.+|||.-...+.+.....+..+++=||. |+.++.=++.+.. .| ..+..++..|+
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~-------~g-------------~~~v~~~~~d~ 137 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARK-------AG-------------YTNVEFRLGEI 137 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHH-------cC-------------CCCEEEEEcch
Confidence 357899999986544433322013456788887 4444333333322 11 13566777776
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEecccCCccc------------cc
Q 021386 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQSRGCALL------------GI 231 (313)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~~rg~~l~------------~~ 231 (313)
.+.+ +....--++++.+++...+. ..++++.+.+.. |++.+++.+.....+++ .+
T Consensus 138 ~~l~----------~~~~~fD~Vi~~~v~~~~~d--~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 205 (272)
T PRK11873 138 EALP----------VADNSVDVIISNCVINLSPD--KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYAGCV 205 (272)
T ss_pred hhCC----------CCCCceeEEEEcCcccCCCC--HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHhccc
Confidence 5431 21122237788888876643 235666666655 67777775541111111 11
Q ss_pred cCCCCHHHHHHHHHHcCCceeEE
Q 021386 232 NATPTLLAKEKLFLDQGWQQAVA 254 (313)
Q Consensus 232 ~~~~t~~~q~~Rf~~~Gw~~~~~ 254 (313)
....+.++..+.+.++||..+..
T Consensus 206 ~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 206 AGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred cCCCCHHHHHHHHHHCCCCceEE
Confidence 22346677778888899988764
No 43
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=87.85 E-value=18 Score=31.61 Aligned_cols=134 Identities=16% Similarity=0.210 Sum_probs=75.1
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
..|+-+|||.=.....|... +..+.=+|. |+.++.=++.+... + ..+.+.+..|+.
T Consensus 32 ~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~-------~-------------~~~v~~~~~d~~ 88 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAE-------N-------------LDNLHTAVVDLN 88 (197)
T ss_pred CcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHc-------C-------------CCcceEEecChh
Confidence 57999999987766666654 345666677 44443323333321 0 123556666765
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec--ccCCccc-cccCCCCHHHHH
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ--SRGCALL-GINATPTLLAKE 241 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~--~rg~~l~-~~~~~~t~~~q~ 241 (313)
+.+ ++.. =-++++-.++.|++++....+++.+.+.. |+|.+++.+. ..+.+.+ +.....+.++..
T Consensus 89 ~~~----------~~~~-fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~el~ 157 (197)
T PRK11207 89 NLT----------FDGE-YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELR 157 (197)
T ss_pred hCC----------cCCC-cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHHHH
Confidence 431 1111 22666667888999999999999998877 5666443221 1111111 111112444444
Q ss_pred HHHHHcCCceeEEcC
Q 021386 242 KLFLDQGWQQAVAWD 256 (313)
Q Consensus 242 ~Rf~~~Gw~~~~~~d 256 (313)
+.|. ||..+...+
T Consensus 158 ~~~~--~~~~~~~~~ 170 (197)
T PRK11207 158 RYYE--GWEMVKYNE 170 (197)
T ss_pred HHhC--CCeEEEeeC
Confidence 4444 999876543
No 44
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=86.18 E-value=22 Score=30.86 Aligned_cols=103 Identities=11% Similarity=0.103 Sum_probs=54.8
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL 164 (313)
...|+-+|||.-.....+.........++=+|. |..++.-++.+.. ..+.+++..|+
T Consensus 40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~----------------------~~~i~~~~~d~ 97 (223)
T TIGR01934 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL----------------------PLNIEFIQADA 97 (223)
T ss_pred CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc----------------------CCCceEEecch
Confidence 368999999987765555444211145666665 3333333322210 23455666776
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec
Q 021386 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ 222 (313)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~ 222 (313)
.+.. +.....-++++-.++..++ ....+++.+.... |++.+++.+.
T Consensus 98 ~~~~----------~~~~~~D~i~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 98 EALP----------FEDNSFDAVTIAFGLRNVT--DIQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred hcCC----------CCCCcEEEEEEeeeeCCcc--cHHHHHHHHHHHcCCCcEEEEEEe
Confidence 5532 1122344555555555443 3456777766655 5666666554
No 45
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=85.14 E-value=14 Score=30.46 Aligned_cols=107 Identities=20% Similarity=0.267 Sum_probs=68.7
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
...|+-||||.=...+.|.....++..++=||.-+.+-.+.+...+. .+ .++.+++..|+.
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~------~~-------------~~ni~~~~~d~~ 64 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKE------LG-------------LDNIEFIQGDIE 64 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHH------TT-------------STTEEEEESBTT
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccc------cc-------------ccccceEEeehh
Confidence 57899999998888777763212567788888855555555443221 11 348999999998
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ 222 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~ 222 (313)
+.+. . +. ..--++++-+++.++... ..+++.+.+.. +++.+++.+.
T Consensus 65 ~l~~-------~-~~-~~~D~I~~~~~l~~~~~~--~~~l~~~~~~lk~~G~~i~~~~ 111 (152)
T PF13847_consen 65 DLPQ-------E-LE-EKFDIIISNGVLHHFPDP--EKVLKNIIRLLKPGGILIISDP 111 (152)
T ss_dssp CGCG-------C-SS-TTEEEEEEESTGGGTSHH--HHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccc-------c-cC-CCeeEEEEcCchhhccCH--HHHHHHHHHHcCCCcEEEEEEC
Confidence 8432 1 11 344578888999888755 36677766655 4666666554
No 46
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=84.03 E-value=32 Score=31.08 Aligned_cols=126 Identities=12% Similarity=0.068 Sum_probs=72.2
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
...|+-+|||.-.....|... .++..++=+|.-+.+-.+.+- .+..++.+|+.
T Consensus 30 ~~~vLDlGcG~G~~~~~l~~~-~p~~~v~gvD~s~~~~~~a~~--------------------------~~~~~~~~d~~ 82 (255)
T PRK14103 30 ARRVVDLGCGPGNLTRYLARR-WPGAVIEALDSSPEMVAAARE--------------------------RGVDARTGDVR 82 (255)
T ss_pred CCEEEEEcCCCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHh--------------------------cCCcEEEcChh
Confidence 468999999999887777654 245678888884433322210 12334555654
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec--------------c----c--
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ--------------S----R-- 224 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~--------------~----r-- 224 (313)
+.. . ...=-++++-.++.+++. -.++++.+.+.. |+|.+++-.+ . .
T Consensus 83 ~~~------~-----~~~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~ 149 (255)
T PRK14103 83 DWK------P-----KPDTDVVVSNAALQWVPE--HADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAK 149 (255)
T ss_pred hCC------C-----CCCceEEEEehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhH
Confidence 310 0 112346677777788753 245666665544 6666654211 0 0
Q ss_pred ---CCccccccCCCCHHHHHHHHHHcCCce
Q 021386 225 ---GCALLGINATPTLLAKEKLFLDQGWQQ 251 (313)
Q Consensus 225 ---g~~l~~~~~~~t~~~q~~Rf~~~Gw~~ 251 (313)
+.+...-..+.+.+...+.+.++||+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v 179 (255)
T PRK14103 150 LLRDIPFRVGAVVQTPAGYAELLTDAGCKV 179 (255)
T ss_pred HhcccccccCcCCCCHHHHHHHHHhCCCeE
Confidence 011111123457888899999999974
No 47
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=83.38 E-value=15 Score=26.76 Aligned_cols=93 Identities=14% Similarity=0.128 Sum_probs=53.6
Q ss_pred EEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCCchh
Q 021386 90 LSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQM 169 (313)
Q Consensus 90 V~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~~~~ 169 (313)
+-+|||.=...-.|... ++..++=+|.-.-+-.+.+.... ..+..++..|..+..
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~----------------------~~~~~~~~~d~~~l~- 55 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLK----------------------NEGVSFRQGDAEDLP- 55 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTT----------------------TSTEEEEESBTTSSS-
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccc----------------------ccCchheeehHHhCc-
Confidence 35788755555455443 35556666664443333333221 233447778877742
Q ss_pred HHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEE
Q 021386 170 LNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFF 218 (313)
Q Consensus 170 l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i 218 (313)
+..+.=.++++-.++.|+ +...++++.+.+.. |+|.++
T Consensus 56 ---------~~~~sfD~v~~~~~~~~~--~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 56 ---------FPDNSFDVVFSNSVLHHL--EDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp ---------S-TT-EEEEEEESHGGGS--SHHHHHHHHHHHHEEEEEEEE
T ss_pred ---------cccccccccccccceeec--cCHHHHHHHHHHHcCcCeEEe
Confidence 333444578999999999 77788888888866 455544
No 48
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=81.10 E-value=37 Score=29.70 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=22.7
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHH
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVT 122 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi 122 (313)
..|+.+|||.=.....+......+..++=+|....+
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~ 88 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGM 88 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHH
Confidence 579999999865555554431124677777774433
No 49
>PLN02366 spermidine synthase
Probab=81.01 E-value=11 Score=35.76 Aligned_cols=121 Identities=15% Similarity=0.179 Sum_probs=66.2
Q ss_pred cceEEEeCCCCchhhhhhccc-CCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccc--cccCC--cc---cCCCe
Q 021386 86 KKQILSLGAGFDTTYFQLQAE-GKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASI--SQAKG--EV---LGDNY 157 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~-~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~--~~~~~--~l---~s~~y 157 (313)
...|+.+|+|-=.....+... +...+..+|+| |+|++.=++.+..... .+ .++.+ ...++ .+ ..++|
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD-~~Vi~~ar~~f~~~~~---~~-~dpRv~vi~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEID-KMVIDVSKKFFPDLAV---GF-DDPRVNLHIGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECC-HHHHHHHHHhhhhhcc---cc-CCCceEEEEChHHHHHhhccCCCC
Confidence 467999999976665444332 12467789999 5677765555543100 00 01111 11111 01 14579
Q ss_pred EEEeccCCCch---------hHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCC
Q 021386 158 KLLPVDLRDIQ---------MLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFST 214 (313)
Q Consensus 158 ~lv~~DL~~~~---------~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~ 214 (313)
.+|-+|+.++. .+-+.+.. -+.++- +++..+-..++.++....+++.+.+.|++
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~-~L~pgG--vlv~q~~s~~~~~~~~~~i~~tl~~~F~~ 229 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVAR-ALRPGG--VVCTQAESMWLHMDLIEDLIAICRETFKG 229 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHH-hcCCCc--EEEECcCCcccchHHHHHHHHHHHHHCCC
Confidence 99999988731 11111111 133332 23333334677888899999999999953
No 50
>PRK00811 spermidine synthase; Provisional
Probab=79.48 E-value=20 Score=33.37 Aligned_cols=125 Identities=14% Similarity=0.146 Sum_probs=68.1
Q ss_pred cceEEEeCCCCchhhhhhccc-CCCCCEEEEecchhHHHHHHHHHhc-------cccchhhhcccccccccCCcccCCCe
Q 021386 86 KKQILSLGAGFDTTYFQLQAE-GKAPHLYVELDFIEVTSKKAALIET-------HGELKDKVGVTASISQAKGEVLGDNY 157 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~-~~~~~~~~EvD~p~vi~~K~~~i~~-------~~~l~~~~g~~~~~~~~~~~l~s~~y 157 (313)
...|+.||||-=.....+... +...+..+|+|-.-+-..|+ .+.. .+.++-..+...... .-...+|
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~-~~~~~~~~~~~d~rv~v~~~Da~~~l----~~~~~~y 151 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRK-YLPEIAGGAYDDPRVELVIGDGIKFV----AETENSF 151 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHH-HhHHhccccccCCceEEEECchHHHH----hhCCCcc
Confidence 457899999876665444332 23568899999754444443 3432 111111111100000 0024689
Q ss_pred EEEeccCCCch---------hHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEE
Q 021386 158 KLLPVDLRDIQ---------MLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFF 218 (313)
Q Consensus 158 ~lv~~DL~~~~---------~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i 218 (313)
.+|-+|+.++. .+-+.+.. -+.++ -. ++..+-..++.++....+++.+.+.|+.....
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~-~L~~g-Gv-lv~~~~~~~~~~~~~~~i~~tl~~~F~~v~~~ 218 (283)
T PRK00811 152 DVIIVDSTDPVGPAEGLFTKEFYENCKR-ALKED-GI-FVAQSGSPFYQADEIKDMHRKLKEVFPIVRPY 218 (283)
T ss_pred cEEEECCCCCCCchhhhhHHHHHHHHHH-hcCCC-cE-EEEeCCCcccCHHHHHHHHHHHHHHCCCEEEE
Confidence 99999987641 11111111 23322 23 34445556677889999999999999886543
No 51
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=79.32 E-value=19 Score=34.70 Aligned_cols=98 Identities=12% Similarity=0.081 Sum_probs=72.4
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
..-.|-+|+|.=+..=++... ++.+.-++.|+|.+++.+..+- ....-+.+|.-
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-------------------------~gV~~v~gdmf 231 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-------------------------PGVEHVAGDMF 231 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-------------------------CCcceeccccc
Confidence 567899999997776665554 5889999999999998877652 01334666665
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCC-CcEEEEEec
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVFFLYEQ 222 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~-~~~~i~ye~ 222 (313)
+. . .+ .-+++..-||-=++.++..++|+.|.+.+| ++.+++-|.
T Consensus 232 q~--~----P~-------~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 232 QD--T----PK-------GDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred cc--C----CC-------cCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 42 1 11 118888899999999999999999999885 577776665
No 52
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=77.41 E-value=33 Score=31.54 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=38.9
Q ss_pred CCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEE
Q 021386 155 DNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFL 219 (313)
Q Consensus 155 ~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ 219 (313)
.+.++...|+.+.. .....--++++-.||+|++++...++++.+.+.. |+|.+++
T Consensus 185 ~~V~F~~~dl~~~~----------~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 185 ERVRFAKHNLLAES----------PPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred CcCEEeeccCCCCC----------CccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 45667777777642 1112335777888999999999999999998877 5555554
No 53
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=73.48 E-value=65 Score=28.47 Aligned_cols=101 Identities=11% Similarity=0.107 Sum_probs=59.3
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~ 166 (313)
..|+-||||.=.....+.....+...++-||.-++ .. ..+.+++-+|+.+
T Consensus 53 ~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~--------~~----------------------~~~v~~i~~D~~~ 102 (209)
T PRK11188 53 MTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM--------DP----------------------IVGVDFLQGDFRD 102 (209)
T ss_pred CEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc--------cC----------------------CCCcEEEecCCCC
Confidence 47999999987665444333113356778887551 11 1246788999998
Q ss_pred chhHHHHHHhCCCCCCCCEEEEEecccccCChHH---------HHHHHHHHHhcC-CCcEEEE
Q 021386 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDS---------SRAIVGWASKTF-STAVFFL 219 (313)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~---------~~~ll~~la~~f-~~~~~i~ 219 (313)
.+.+..++.. +.....-++++.....+..... ...+++.+.+.. |+|.+++
T Consensus 103 ~~~~~~i~~~--~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 103 ELVLKALLER--VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred hHHHHHHHHH--hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 7656655443 2234455677766554443211 134666666655 6777765
No 54
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=70.46 E-value=36 Score=24.31 Aligned_cols=97 Identities=18% Similarity=0.178 Sum_probs=56.5
Q ss_pred EEEeCCCCchhhhhhcccCCCCCEEEEecchh--HHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 021386 89 ILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE--VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (313)
Q Consensus 89 VV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~--vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~ 166 (313)
|+.+|||.-.....+... .+..++=+|... +...++ .... + ...+..++..|..+
T Consensus 2 ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~-~~~~--------~------------~~~~~~~~~~~~~~ 58 (107)
T cd02440 2 VLDLGCGTGALALALASG--PGARVTGVDISPVALELARK-AAAA--------L------------LADNVEVLKGDAEE 58 (107)
T ss_pred eEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHH-HHhc--------c------------cccceEEEEcChhh
Confidence 788999987766665542 344555555433 333332 1111 0 03456677777766
Q ss_pred chhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEE
Q 021386 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFF 218 (313)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i 218 (313)
... .....+-++++-.++.++ .+....+++.+.+.. +++.++
T Consensus 59 ~~~---------~~~~~~d~i~~~~~~~~~-~~~~~~~l~~~~~~l~~~g~~~ 101 (107)
T cd02440 59 LPP---------EADESFDVIISDPPLHHL-VEDLARFLEEARRLLKPGGVLV 101 (107)
T ss_pred hcc---------ccCCceEEEEEccceeeh-hhHHHHHHHHHHHHcCCCCEEE
Confidence 421 123456688887777766 677888888877766 455544
No 55
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=70.13 E-value=46 Score=29.67 Aligned_cols=99 Identities=15% Similarity=0.229 Sum_probs=59.9
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
-..++-+|||-=..--+|... ...+..+|+--.. +++=++.+.. ..+..++-.|+.
T Consensus 44 y~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~A-l~~Ar~Rl~~----------------------~~~V~~~~~dvp 99 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRA-LARARERLAG----------------------LPHVEWIQADVP 99 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHH-HHHHHHHTTT-----------------------SSEEEEES-TT
T ss_pred cceeEecCCCccHHHHHHHHh-hCceEEEeCCHHH-HHHHHHhcCC----------------------CCCeEEEECcCC
Confidence 578999999998888888654 2334444444344 4443434432 357888999986
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCCh-HHHHHHHHHHHhcC-CCcEEEE
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDP-DSSRAIVGWASKTF-STAVFFL 219 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~-~~~~~ll~~la~~f-~~~~~i~ 219 (313)
+. +. ...|| .++++| |++||++ ++..+++..+.... |+|.+|+
T Consensus 100 ~~--~P----~~~FD----LIV~SE-VlYYL~~~~~L~~~l~~l~~~L~pgG~LV~ 144 (201)
T PF05401_consen 100 EF--WP----EGRFD----LIVLSE-VLYYLDDAEDLRAALDRLVAALAPGGHLVF 144 (201)
T ss_dssp T---------SS-EE----EEEEES--GGGSSSHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred CC--CC----CCCee----EEEEeh-HhHcCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 62 11 11233 566666 8999985 78899999888755 6777775
No 56
>PHA03412 putative methyltransferase; Provisional
Probab=67.24 E-value=5.8 Score=36.38 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=28.1
Q ss_pred ceEEEeCCCCchhhhhhcccC-CCCCEEEEecchh
Q 021386 87 KQILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIE 120 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~-~~~~~~~EvD~p~ 120 (313)
.-+.+-|||.||-+||=.|.+ .+-+.+++|||-+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (241)
T PHA03412 194 GLEMNPGCGIDTGYYLEDWKGVKPLCEVVCMEFNE 228 (241)
T ss_pred CeeecCCCCccceeehhhccCCCccceEEEEeecC
Confidence 358899999999999988876 4567789999854
No 57
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=66.75 E-value=91 Score=27.47 Aligned_cols=135 Identities=10% Similarity=-0.012 Sum_probs=68.2
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHH-HHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVT-SKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi-~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL 164 (313)
...|+.+|||.-.....+... ...+.-+|....+ +.-++.+... ..+..++.+|.
T Consensus 49 ~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~---------------------~~~~~~~~~~~ 104 (233)
T PRK05134 49 GKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALES---------------------GLKIDYRQTTA 104 (233)
T ss_pred CCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHc---------------------CCceEEEecCH
Confidence 357999999987776666544 3445666664333 2222222210 11234444444
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEecccC-----------------C
Q 021386 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQSRG-----------------C 226 (313)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~~rg-----------------~ 226 (313)
.+. +...+ ..--++++-.++-+++. ...+++.+.+.. |+|.+++=...+. .
T Consensus 105 ~~~------~~~~~---~~fD~Ii~~~~l~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 173 (233)
T PRK05134 105 EEL------AAEHP---GQFDVVTCMEMLEHVPD--PASFVRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYVLRML 173 (233)
T ss_pred HHh------hhhcC---CCccEEEEhhHhhccCC--HHHHHHHHHHHcCCCcEEEEEecCCChHHHHHHHhhHHHHhhhc
Confidence 332 11101 22334444444445432 345677777655 5565543221000 0
Q ss_pred cc--ccccCCCCHHHHHHHHHHcCCceeEEc
Q 021386 227 AL--LGINATPTLLAKEKLFLDQGWQQAVAW 255 (313)
Q Consensus 227 ~l--~~~~~~~t~~~q~~Rf~~~Gw~~~~~~ 255 (313)
+. .....|.+.++..+.+.++||+.+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 174 PKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred CcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 00 112346678888889999999987653
No 58
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=66.43 E-value=40 Score=31.55 Aligned_cols=190 Identities=13% Similarity=0.223 Sum_probs=82.1
Q ss_pred CCCCchhHHhhhcCCCcCCccccchhHHHHHHHHHHHHHHHhcCCCCCCCCCccceEEEeCCCCchh-hhhhcccCCCCC
Q 021386 33 GYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTT-YFQLQAEGKAPH 111 (313)
Q Consensus 33 gy~~Dpfa~~fv~~~~rr~P~inrG~~~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGAGlDTr-~~RL~~~~~~~~ 111 (313)
+.++-.|++.+........-+-...||-+..-+-+.=-..+....+. ....|+-+|+|==|. ...|......+.
T Consensus 73 ~~LE~~~A~~l~~~~~p~~~L~~FpYy~nY~~L~~lE~~~l~~~~~~-----~p~rVaFIGSGPLPlT~i~la~~~~~~~ 147 (276)
T PF03059_consen 73 GLLESHWAKRLLASDNPLDHLESFPYYPNYEKLVRLEYAALRIHAGD-----PPSRVAFIGSGPLPLTSIVLAKQHGPGA 147 (276)
T ss_dssp HHHHHHHHHHHHH-SSHHHHHHTSTTHHHHHHHHHHHHH-HTT--TT--------EEEEE---SS-HHHHHHH--HTT--
T ss_pred HHHHHHHHHHHHhCCCHHHHHhcCCcHHHHHHHHHHHHHHHhhcCCc-----ccceEEEEcCCCcchHHHHHHHHhCCCC
Confidence 55677788777754321111333456655433333222223333221 146899999995444 666654312344
Q ss_pred EEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEEe
Q 021386 112 LYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAE 190 (313)
Q Consensus 112 ~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~E 190 (313)
.+..+|. |+-++.-++++.....| +.+..++.+|..+... + |. .+ -++|++
T Consensus 148 ~v~~iD~d~~A~~~a~~lv~~~~~L------------------~~~m~f~~~d~~~~~~--d-l~--~~----DvV~lA- 199 (276)
T PF03059_consen 148 RVHNIDIDPEANELARRLVASDLGL------------------SKRMSFITADVLDVTY--D-LK--EY----DVVFLA- 199 (276)
T ss_dssp EEEEEESSHHHHHHHHHHHH---HH-------------------SSEEEEES-GGGG-G--G-----------SEEEE--
T ss_pred eEEEEeCCHHHHHHHHHHHhhcccc------------------cCCeEEEecchhcccc--c-cc--cC----CEEEEh-
Confidence 5544444 34445555666643222 5678888888765320 1 11 12 355555
Q ss_pred cccccCChHHHHHHHHHHHhcCCCcEEEEEecccCCccccccCCCCHHHHHHHHHHcCCceeEEcC-HHHHHhc
Q 021386 191 CVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALLGINATPTLLAKEKLFLDQGWQQAVAWD-MLRVYST 263 (313)
Q Consensus 191 gvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~~rg~~l~~~~~~~t~~~q~~Rf~~~Gw~~~~~~d-m~~~y~~ 263 (313)
.|+.|+.+.-.++|..+.+..+.+..+++=. +-.++++- ||..+-..- .||+...... -.+++|+
T Consensus 200 -alVg~~~e~K~~Il~~l~~~m~~ga~l~~Rs--a~GlR~~L-Yp~vd~~~l----~gf~~~~~~hP~~~ViNS 265 (276)
T PF03059_consen 200 -ALVGMDAEPKEEILEHLAKHMAPGARLVVRS--AHGLRSFL-YPVVDPEDL----RGFEVLAVVHPTDEVINS 265 (276)
T ss_dssp -TT-S----SHHHHHHHHHHHS-TTSEEEEEE----GGGGGS-S----TGGG----TTEEEEEEE---TT---E
T ss_pred -hhcccccchHHHHHHHHHhhCCCCcEEEEec--chhhHHHc-CCCCChHHC----CCeEEEEEECCCCCceeE
Confidence 4678899999999999999887777776532 22334422 664332211 2998755433 2346654
No 59
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=66.32 E-value=47 Score=30.13 Aligned_cols=104 Identities=12% Similarity=0.113 Sum_probs=66.5
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHH-HHHHHhccccchhhhcccccccccCCcccCCCeE-EEecc
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSK-KAALIETHGELKDKVGVTASISQAKGEVLGDNYK-LLPVD 163 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~-K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~-lv~~D 163 (313)
+.-|+-+|||.-+-+=-.++. +..++.-+|-.+.++. =.+-+.+. ...++. +|-+|
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~--p~~svt~lDpn~~mee~~~ks~~E~--------------------k~~~~~~fvva~ 134 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWK--PINSVTCLDPNEKMEEIADKSAAEK--------------------KPLQVERFVVAD 134 (252)
T ss_pred ccceEEecccCCCCcccccCC--CCceEEEeCCcHHHHHHHHHHHhhc--------------------cCcceEEEEeec
Confidence 577899999999987666665 6778888887655542 11112211 134455 88888
Q ss_pred CCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec
Q 021386 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ 222 (313)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~ 222 (313)
.++..+|. +.-+|.-.-||+|+ +.+...+.|+.+.+.. |+|.++..|.
T Consensus 135 ge~l~~l~----d~s~DtVV~TlvLC-------Sve~~~k~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 135 GENLPQLA----DGSYDTVVCTLVLC-------SVEDPVKQLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred hhcCcccc----cCCeeeEEEEEEEe-------ccCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 88875542 22355444444443 4566777788887766 6788777675
No 60
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=65.95 E-value=19 Score=30.28 Aligned_cols=88 Identities=14% Similarity=0.066 Sum_probs=50.4
Q ss_pred CCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEeccc---------
Q 021386 155 DNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQSR--------- 224 (313)
Q Consensus 155 ~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~~r--------- 224 (313)
.+.+++..|..+.+ +..+.--++++-.++.+++ +-.+.++.+.+.. |+|.+++.|...
T Consensus 26 ~~i~~~~~d~~~lp----------~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~ 93 (160)
T PLN02232 26 KCIEWIEGDAIDLP----------FDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFM 93 (160)
T ss_pred CceEEEEechhhCC----------CCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHH
Confidence 35677777776532 2222223445556666664 3456666666655 677777766410
Q ss_pred --------CCcc--------------ccccCCCCHHHHHHHHHHcCCceeEE
Q 021386 225 --------GCAL--------------LGINATPTLLAKEKLFLDQGWQQAVA 254 (313)
Q Consensus 225 --------g~~l--------------~~~~~~~t~~~q~~Rf~~~Gw~~~~~ 254 (313)
+.|+ .++..|++.++..+.++++||+.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~ 145 (160)
T PLN02232 94 QGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACH 145 (160)
T ss_pred HHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceE
Confidence 0110 12346677788888888888876653
No 61
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=64.99 E-value=56 Score=32.73 Aligned_cols=93 Identities=19% Similarity=0.296 Sum_probs=55.2
Q ss_pred ceEEEeCCCCchhhhhhcccC---CCCCEEEEecc--hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEe
Q 021386 87 KQILSLGAGFDTTYFQLQAEG---KAPHLYVELDF--IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLP 161 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~---~~~~~~~EvD~--p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~ 161 (313)
+.|+.+|||-=++..+-...+ ...+++|=|.- ..++..|. ++..+. + .++.++|.
T Consensus 188 ~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~-~v~~n~-w------------------~~~V~vi~ 247 (448)
T PF05185_consen 188 KVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQK-RVNANG-W------------------GDKVTVIH 247 (448)
T ss_dssp -EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHH-HHHHTT-T------------------TTTEEEEE
T ss_pred eEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHH-HHHhcC-C------------------CCeEEEEe
Confidence 579999999999965532221 12355665554 33444443 333321 1 46799999
Q ss_pred ccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHh
Q 021386 162 VDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASK 210 (313)
Q Consensus 162 ~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~ 210 (313)
.|+++.+. +.+.=++|+|.+=.++..|-+-+.|....+
T Consensus 248 ~d~r~v~l-----------pekvDIIVSElLGsfg~nEl~pE~Lda~~r 285 (448)
T PF05185_consen 248 GDMREVEL-----------PEKVDIIVSELLGSFGDNELSPECLDAADR 285 (448)
T ss_dssp S-TTTSCH-----------SS-EEEEEE---BTTBTTTSHHHHHHHGGG
T ss_pred CcccCCCC-----------CCceeEEEEeccCCccccccCHHHHHHHHh
Confidence 99999631 236779999999888888888888765544
No 62
>PRK08317 hypothetical protein; Provisional
Probab=64.77 E-value=94 Score=26.91 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=58.3
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHH--HHHHHHHhccccchhhhcccccccccCCcccCCCeEEEecc
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVT--SKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi--~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~D 163 (313)
...|+-+|||.-.....+.....+...++=+|....+ ..|++ ... ...+.+++..|
T Consensus 20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~-~~~---------------------~~~~~~~~~~d 77 (241)
T PRK08317 20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER-AAG---------------------LGPNVEFVRGD 77 (241)
T ss_pred CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH-hhC---------------------CCCceEEEecc
Confidence 3579999999877666654431134566666664332 22221 111 13456677777
Q ss_pred CCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec
Q 021386 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ 222 (313)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~ 222 (313)
+.+.. +....--++++-.++.++.. ...+++.+.+.. |+|.+++.++
T Consensus 78 ~~~~~----------~~~~~~D~v~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 78 ADGLP----------FPDGSFDAVRSDRVLQHLED--PARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred cccCC----------CCCCCceEEEEechhhccCC--HHHHHHHHHHHhcCCcEEEEEec
Confidence 76532 22233456777777777754 455677776655 5676665554
No 63
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=63.75 E-value=33 Score=26.97 Aligned_cols=62 Identities=13% Similarity=0.245 Sum_probs=42.4
Q ss_pred ccccCChHHHHHHHHHHHhcCCCcEEEEEec---------ccCCccccccC----CCCHH-HHHHHHHHcCCceeE
Q 021386 192 VLIYLDPDSSRAIVGWASKTFSTAVFFLYEQ---------SRGCALLGINA----TPTLL-AKEKLFLDQGWQQAV 253 (313)
Q Consensus 192 vl~YL~~~~~~~ll~~la~~f~~~~~i~ye~---------~rg~~l~~~~~----~~t~~-~q~~Rf~~~Gw~~~~ 253 (313)
||+|=+++++.++|+.++++-.+..++.|-| .-|.-+|+-.. ||-.+ ...+.+.++||+...
T Consensus 4 vLIHYp~~d~~~~l~~La~~t~~~~ifTfAP~T~~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~~~l~~~g~~~~r 79 (97)
T PF07109_consen 4 VLIHYPAEDAAQMLAHLASRTRGSLIFTFAPRTPLLALMHAIGKLFPRPDRSPRIYPHREEDLRRALAAAGWRIGR 79 (97)
T ss_pred eEeccCHHHHHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHhccCCCCCCCCcEEEeCHHHHHHHHHhCCCeeee
Confidence 6788899999999999999877777777877 23333343332 33234 445556789998765
No 64
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=63.11 E-value=1e+02 Score=26.76 Aligned_cols=129 Identities=12% Similarity=0.110 Sum_probs=68.9
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~ 166 (313)
..|+-||||.-.....+...+ +...++=+|....+....+.-. ..+..++.+|+.+
T Consensus 36 ~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~-----------------------~~~~~~~~~d~~~ 91 (240)
T TIGR02072 36 ASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKL-----------------------SENVQFICGDAEK 91 (240)
T ss_pred CeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhc-----------------------CCCCeEEecchhh
Confidence 579999999987665555442 4555666665433322221100 1244556667654
Q ss_pred chhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEecccCC-c-----cc-cccCCCCHH
Q 021386 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQSRGC-A-----LL-GINATPTLL 238 (313)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~~rg~-~-----l~-~~~~~~t~~ 238 (313)
.. +.....-++++-.++.++.. ..++++.+.+.. |+|.+++-++..+. + +. ....|++.+
T Consensus 92 ~~----------~~~~~fD~vi~~~~l~~~~~--~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (240)
T TIGR02072 92 LP----------LEDSSFDLIVSNLALQWCDD--LSQALSELARVLKPGGLLAFSTFGPGTLHELRQSFGQHGLRYLSLD 159 (240)
T ss_pred CC----------CCCCceeEEEEhhhhhhccC--HHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHHHHHhccCCCCHH
Confidence 31 22234457777777777743 345677776655 56666543330000 0 00 112466777
Q ss_pred HHHHHHHHcCCcee
Q 021386 239 AKEKLFLDQGWQQA 252 (313)
Q Consensus 239 ~q~~Rf~~~Gw~~~ 252 (313)
...+.+.+. |...
T Consensus 160 ~~~~~l~~~-f~~~ 172 (240)
T TIGR02072 160 ELKALLKNS-FELL 172 (240)
T ss_pred HHHHHHHHh-cCCc
Confidence 767777665 6544
No 65
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=62.95 E-value=83 Score=28.36 Aligned_cols=108 Identities=13% Similarity=0.162 Sum_probs=53.4
Q ss_pred cceEEEeC--CCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEecc
Q 021386 86 KKQILSLG--AGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (313)
Q Consensus 86 ~~QVV~LG--AGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~D 163 (313)
...|+.+| +|+.+..+-....+...+.-+|+|-..+-..|. .+++. |- .++.+++-.|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~-n~~~~-------gl------------~~~i~~~~gd 128 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLE-FIKKA-------GV------------DHKINFIQSD 128 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH-HHHHc-------CC------------CCcEEEEEcc
Confidence 46799999 566666433222212456777777544433343 34432 11 3567888888
Q ss_pred CCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEEEEec
Q 021386 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQ 222 (313)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~ 222 (313)
..+ .+.. |...+-+ ...-+++..+ ....-..++..+......+.+++.|-
T Consensus 129 a~~--~L~~-l~~~~~~-~~fD~VfiDa-----~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 129 ALS--ALDQ-LLNNDPK-PEFDFAFVDA-----DKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HHH--HHHH-HHhCCCC-CCCCEEEECC-----CHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 765 2333 2211111 1122222222 12344566777666665555566664
No 66
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=61.85 E-value=1.1e+02 Score=26.65 Aligned_cols=136 Identities=10% Similarity=-0.026 Sum_probs=69.0
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchh-HHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~-vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL 164 (313)
...|+.+|||.-+....+... ...++-+|... +++.-++.+.... ..+.+++..|+
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~--------------------~~~~~~~~~d~ 102 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDP--------------------LLKIEYRCTSV 102 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcC--------------------CCceEEEeCCH
Confidence 357999999987776666544 23455666633 3333333333210 11234444443
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEeccc-----------------CC
Q 021386 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQSR-----------------GC 226 (313)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~~r-----------------g~ 226 (313)
.+. ... .+..--++++-.++.+... ...+++.+.+.. +++.+++....+ ..
T Consensus 103 ~~~------~~~---~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~ 171 (224)
T TIGR01983 103 EDL------AEK---GAKSFDVVTCMEVLEHVPD--PQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIV 171 (224)
T ss_pred HHh------hcC---CCCCccEEEehhHHHhCCC--HHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcC
Confidence 321 100 0123345555556666543 345667666654 455554433200 00
Q ss_pred ccc--cccCCCCHHHHHHHHHHcCCceeEEc
Q 021386 227 ALL--GINATPTLLAKEKLFLDQGWQQAVAW 255 (313)
Q Consensus 227 ~l~--~~~~~~t~~~q~~Rf~~~Gw~~~~~~ 255 (313)
+-. ....|.+.++..+-+.++||+.+...
T Consensus 172 ~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~ 202 (224)
T TIGR01983 172 PKGTHDWEKFIKPSELTSWLESAGLRVKDVK 202 (224)
T ss_pred CCCcCChhhcCCHHHHHHHHHHcCCeeeeee
Confidence 000 01235577778888889999987654
No 67
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=60.77 E-value=23 Score=32.31 Aligned_cols=95 Identities=21% Similarity=0.317 Sum_probs=60.0
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL 164 (313)
..+||-||||-=-.-=-|... .+.....-||. |++++.-++.+ .+..+.-+|+
T Consensus 31 ~~~v~DLGCGpGnsTelL~~R-wP~A~i~GiDsS~~Mla~Aa~rl-------------------------p~~~f~~aDl 84 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARR-WPDAVITGIDSSPAMLAKAAQRL-------------------------PDATFEEADL 84 (257)
T ss_pred cceeeecCCCCCHHHHHHHHh-CCCCeEeeccCCHHHHHHHHHhC-------------------------CCCceecccH
Confidence 579999999864322112222 35678889998 45554443332 2345566777
Q ss_pred CCchhHHHHHHhCCCCCCCC-EEEEEecccccCChHHHHHHHHHHHhcCCCcEEEE
Q 021386 165 RDIQMLNEVINLANMDPSLP-TFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFL 219 (313)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~P-Tl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ 219 (313)
++ +.+..| -|+.+-.||..| |+...-+-+++...-|+|.+..
T Consensus 85 ~~------------w~p~~~~dllfaNAvlqWl-pdH~~ll~rL~~~L~Pgg~LAV 127 (257)
T COG4106 85 RT------------WKPEQPTDLLFANAVLQWL-PDHPELLPRLVSQLAPGGVLAV 127 (257)
T ss_pred hh------------cCCCCccchhhhhhhhhhc-cccHHHHHHHHHhhCCCceEEE
Confidence 65 334444 467778889988 5566667777777778887665
No 68
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=57.81 E-value=1.2e+02 Score=25.89 Aligned_cols=102 Identities=14% Similarity=0.169 Sum_probs=53.4
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
..+|+-+|||.=....-+.....+..+++=+|.-+.. . ..+.+++..|+.
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~--------~----------------------~~~i~~~~~d~~ 82 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK--------P----------------------IENVDFIRGDFT 82 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc--------c----------------------CCCceEEEeeCC
Confidence 3689999999876544333221123345555554422 1 123456777887
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEeccccc-----CCh----HHHHHHHHHHHhcC-CCcEEEE
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIY-----LDP----DSSRAIVGWASKTF-STAVFFL 219 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~Y-----L~~----~~~~~ll~~la~~f-~~~~~i~ 219 (313)
+.+.+..++.. +..+..-++++.+...+ +.. +....+++.+.+.. |+|.+++
T Consensus 83 ~~~~~~~l~~~--~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 83 DEEVLNKIRER--VGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred ChhHHHHHHHH--hCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEE
Confidence 75434333222 23334556666554221 111 22356677766655 5677664
No 69
>PTZ00146 fibrillarin; Provisional
Probab=56.97 E-value=1.8e+02 Score=27.55 Aligned_cols=134 Identities=16% Similarity=0.142 Sum_probs=73.2
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~ 166 (313)
.-|+-||||.=+...-+...--+.-.+|=||+.+-+.. .++..... ..|...+-.|.++
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~--dLl~~ak~-------------------r~NI~~I~~Da~~ 192 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGR--DLTNMAKK-------------------RPNIVPIIEDARY 192 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHH--HHHHHhhh-------------------cCCCEEEECCccC
Confidence 46999999998876666543112336777777543221 22221100 1355667778776
Q ss_pred chhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEecccCCccccccCCCCHHHH----H
Q 021386 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQSRGCALLGINATPTLLAK----E 241 (313)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~~rg~~l~~~~~~~t~~~q----~ 241 (313)
...... +....-.+|+. . ..+++...++..+.... |++.+++- ++..+++.-|+++.. +
T Consensus 193 p~~y~~------~~~~vDvV~~D-v----a~pdq~~il~~na~r~LKpGG~~vI~-----ika~~id~g~~pe~~f~~ev 256 (293)
T PTZ00146 193 PQKYRM------LVPMVDVIFAD-V----AQPDQARIVALNAQYFLKNGGHFIIS-----IKANCIDSTAKPEVVFASEV 256 (293)
T ss_pred hhhhhc------ccCCCCEEEEe-C----CCcchHHHHHHHHHHhccCCCEEEEE-----EeccccccCCCHHHHHHHHH
Confidence 422211 11122222222 1 13666666766655544 67777762 223334555666654 6
Q ss_pred HHHHHcCCceeEEcCH
Q 021386 242 KLFLDQGWQQAVAWDM 257 (313)
Q Consensus 242 ~Rf~~~Gw~~~~~~dm 257 (313)
+.+.+.||+.....++
T Consensus 257 ~~L~~~GF~~~e~v~L 272 (293)
T PTZ00146 257 QKLKKEGLKPKEQLTL 272 (293)
T ss_pred HHHHHcCCceEEEEec
Confidence 7789999998777665
No 70
>PHA03411 putative methyltransferase; Provisional
Probab=55.89 E-value=7.1 Score=36.57 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=27.5
Q ss_pred ceEEEeCCCCchhhhhhcccC-CCCCEEEEecchh
Q 021386 87 KQILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIE 120 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~-~~~~~~~EvD~p~ 120 (313)
.=+.--|||-||.+||=.|.+ .+-+.+++|||-+
T Consensus 206 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (279)
T PHA03411 206 GLVTYAGCGIDTSIYRDEWHSTNVLTEVVEVRYYE 240 (279)
T ss_pred CcEecCCCCcccceehhhccCCCccceEEEEEecc
Confidence 347788999999999988876 4567789999854
No 71
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=55.40 E-value=1.7e+02 Score=27.47 Aligned_cols=123 Identities=16% Similarity=0.140 Sum_probs=73.0
Q ss_pred cceEEEeCCCCchhhhhhccc-CCCCCEEEEecchhHHHHHHHHHhccccchhhhcccc--cccccCC--cc--cCCCeE
Q 021386 86 KKQILSLGAGFDTTYFQLQAE-GKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA--SISQAKG--EV--LGDNYK 158 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~-~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~--~~~~~~~--~l--~s~~y~ 158 (313)
.+-|+.+|.|-=.....+... ....++.+|||- .|++.=++.+...... .. ++ .+..+++ .+ .+..|-
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~-~Vi~~ar~~l~~~~~~---~~-dpRv~i~i~Dg~~~v~~~~~~fD 151 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDP-AVIELARKYLPEPSGG---AD-DPRVEIIIDDGVEFLRDCEEKFD 151 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCH-HHHHHHHHhccCcccc---cC-CCceEEEeccHHHHHHhCCCcCC
Confidence 357888887766665544332 136788999995 6888877777653210 00 12 1222222 11 133689
Q ss_pred EEeccCCCch---------hHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcE
Q 021386 159 LLPVDLRDIQ---------MLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAV 216 (313)
Q Consensus 159 lv~~DL~~~~---------~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~ 216 (313)
+|-+|..|+. .+-+.... .+ +.+=++++.+-..++..+.....-+.+...|+...
T Consensus 152 vIi~D~tdp~gp~~~Lft~eFy~~~~~-~L--~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~ 215 (282)
T COG0421 152 VIIVDSTDPVGPAEALFTEEFYEGCRR-AL--KEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVP 215 (282)
T ss_pred EEEEcCCCCCCcccccCCHHHHHHHHH-hc--CCCcEEEEecCCcccchHHHHHHHHHHHhhccccc
Confidence 9999999871 11111111 11 24456777766688888888888888888886543
No 72
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=55.25 E-value=1.4e+02 Score=27.43 Aligned_cols=123 Identities=11% Similarity=0.161 Sum_probs=61.9
Q ss_pred cceEEEeCCCCchhhhhhcccC-CCCCEEEEecchhHHHHHHHHHhccccchhhhc-ccccccccCC--cc--cCCCeEE
Q 021386 86 KKQILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIEVTSKKAALIETHGELKDKVG-VTASISQAKG--EV--LGDNYKL 159 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~-~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g-~~~~~~~~~~--~l--~s~~y~l 159 (313)
..-|+.||||.=.....+.... ...+..+|+|- ++++.=++.+..... .+. +...+...++ .+ ....|.+
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~-~vi~~a~~~~~~~~~---~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDE-KVIELSKKFLPSLAG---SYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCH-HHHHHHHHHhHhhcc---cccCCceEEEECchHHHHHhCCCCccE
Confidence 3589999999866554443221 24688999984 555544444432110 000 0000111111 00 1356777
Q ss_pred EeccCCCch----------hHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcE
Q 021386 160 LPVDLRDIQ----------MLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAV 216 (313)
Q Consensus 160 v~~DL~~~~----------~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~ 216 (313)
|-+|..+.. -++. +.. -+.++- .+++ .....++..+....+.+.+++.|+...
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~-~~~-~L~pgG-~lv~-~~~~~~~~~~~~~~~~~tl~~~F~~v~ 211 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYEL-LKK-ALNEDG-IFVA-QSESPWIQLELITDLKRDVKEAFPITE 211 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHH-HHH-HhCCCc-EEEE-cCCCcccCHHHHHHHHHHHHHHCCCeE
Confidence 777765321 0111 111 122222 2332 244466778888888888998888754
No 73
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=55.13 E-value=2.1e+02 Score=27.80 Aligned_cols=207 Identities=18% Similarity=0.222 Sum_probs=117.9
Q ss_pred CCccccc---hhHHHHHHHHHHHHHHHhcCCCCCCCCCccceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHH-H
Q 021386 50 RSPIINR---GYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSK-K 125 (313)
Q Consensus 50 r~P~inr---G~~~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~-K 125 (313)
++|+|+. --|+.... |..|... ..|+..||||-=--..+.... .--.|+-+|..+|--. =
T Consensus 93 ~S~Ii~lRnfNNwIKs~L----I~~y~~~----------~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa 156 (389)
T KOG1975|consen 93 RSPIIFLRNFNNWIKSVL----INLYTKR----------GDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQA 156 (389)
T ss_pred cCceeehhhhhHHHHHHH----HHHHhcc----------ccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHH
Confidence 5888763 34555544 3444432 357888999864443333322 2335788888765221 1
Q ss_pred HHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCC--EEEEEeccccc--CChHHH
Q 021386 126 AALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLP--TFIIAECVLIY--LDPDSS 201 (313)
Q Consensus 126 ~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~P--Tl~i~Egvl~Y--L~~~~~ 201 (313)
++..+.......-. .=...++.+|=.. ..|.+++ .+..| -++-++-++.| -+.+++
T Consensus 157 ~~RYrdm~~r~~~~--------------~f~a~f~~~Dc~~-~~l~d~~-----e~~dp~fDivScQF~~HYaFetee~a 216 (389)
T KOG1975|consen 157 RKRYRDMKNRFKKF--------------IFTAVFIAADCFK-ERLMDLL-----EFKDPRFDIVSCQFAFHYAFETEESA 216 (389)
T ss_pred HHHHHHHHhhhhcc--------------cceeEEEEeccch-hHHHHhc-----cCCCCCcceeeeeeeEeeeeccHHHH
Confidence 11122111100000 1134678888655 3455543 23344 46667777766 578889
Q ss_pred HHHHHHHHhcC-CCcEEEEEec--------------------------------ccCCcccccc---------CCC----
Q 021386 202 RAIVGWASKTF-STAVFFLYEQ--------------------------------SRGCALLGIN---------ATP---- 235 (313)
Q Consensus 202 ~~ll~~la~~f-~~~~~i~ye~--------------------------------~rg~~l~~~~---------~~~---- 235 (313)
+-+++.++... |+|.||.--| .-..|+-|+. .+|
T Consensus 217 r~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~k~~~~p~fG~kY~F~LedaVdcPEylV 296 (389)
T KOG1975|consen 217 RIALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQKEFDVPPFGAKYRFHLEDAVDCPEYLV 296 (389)
T ss_pred HHHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeecccccCCCCccceEEEEcccccCCcceee
Confidence 99999998877 6778876444 1113554433 122
Q ss_pred CHHHHHHHHHHcCCceeEEcCHHHHHhcCCCHH-HHH---HHhhc--------cCCCcHHHHHHHhcCc
Q 021386 236 TLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQ-ERR---RIERL--------ELFDEFEEWHMMQEHY 292 (313)
Q Consensus 236 t~~~q~~Rf~~~Gw~~~~~~dm~~~y~~~l~~~-er~---ri~~l--------E~fDE~Ee~~l~~~HY 292 (313)
.-+..++-+.++|.+-+......++|+..+... +|. |.+-| |.=||+|.-...+.-+
T Consensus 297 ~F~~l~~lae~y~LeLv~~k~F~df~~e~~~~~~~~~Llkrm~gLe~~~~~~~~~~de~e~a~~~l~~~ 365 (389)
T KOG1975|consen 297 PFPTLVSLAEEYGLELVFVKPFADFYEEELKKNEERELLKRMEGLECYPNEEGESGDEYEAASFYLTFF 365 (389)
T ss_pred ehHHHHHHHHhcCcEEEEeccHHHHHHHhccccchhhHHHHHhcccCCCccccccchHHHHHHHHHhhh
Confidence 124455566778999999999999999877554 333 33333 4557888777655433
No 74
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=54.51 E-value=1.9e+02 Score=27.14 Aligned_cols=44 Identities=9% Similarity=0.136 Sum_probs=29.0
Q ss_pred cceEEEeCCCCchhhhhhccc-C------CCCCEEEEecchhHHHHHHHHH
Q 021386 86 KKQILSLGAGFDTTYFQLQAE-G------KAPHLYVELDFIEVTSKKAALI 129 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~-~------~~~~~~~EvD~p~vi~~K~~~i 129 (313)
..+|+-++||.=-.+||+... + ..++.+.|+.-+.+-.-|++..
T Consensus 101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~ 151 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAK 151 (296)
T ss_pred CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHh
Confidence 479999999999999998644 1 1345555665554444455443
No 75
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=52.78 E-value=1.4e+02 Score=26.07 Aligned_cols=128 Identities=12% Similarity=0.082 Sum_probs=65.4
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchh--HHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEecc
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE--VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~--vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~D 163 (313)
...|+-+|||.=+....+... .++..++-||.-. +-..+++. ... + ..+..++.+|
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~-~p~~~v~gVD~s~~~i~~a~~~~-~~~-------~-------------~~~v~~~~~d 98 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKA-NPDINFIGIEVHEPGVGKALKKI-EEE-------G-------------LTNLRLLCGD 98 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHH-CCCccEEEEEechHHHHHHHHHH-HHc-------C-------------CCCEEEEecC
Confidence 468999999999887776543 2445566666633 33333222 211 0 2456777777
Q ss_pred CCCchhHHHHHHhCCCCCCCCEEEEEecccccCCh------HHHHHHHHHHHhcC-CCcEEEEEecccCCccccccCCCC
Q 021386 164 LRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDP------DSSRAIVGWASKTF-STAVFFLYEQSRGCALLGINATPT 236 (313)
Q Consensus 164 L~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~------~~~~~ll~~la~~f-~~~~~i~ye~~rg~~l~~~~~~~t 236 (313)
..+ .+...+... +...+++. ....+... .....+++.+.+.. |+|.+++... ...-
T Consensus 99 ~~~--~l~~~~~~~----~~D~V~~~-~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~----------~~~~ 161 (202)
T PRK00121 99 AVE--VLLDMFPDG----SLDRIYLN-FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD----------WEGY 161 (202)
T ss_pred HHH--HHHHHcCcc----ccceEEEE-CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC----------CHHH
Confidence 621 222222111 12233322 11222211 11356777777756 5666665221 1112
Q ss_pred HHHHHHHHHHcCCcee
Q 021386 237 LLAKEKLFLDQGWQQA 252 (313)
Q Consensus 237 ~~~q~~Rf~~~Gw~~~ 252 (313)
.+...+.+.+.||.+.
T Consensus 162 ~~~~~~~~~~~g~~~~ 177 (202)
T PRK00121 162 AEYMLEVLSAEGGFLV 177 (202)
T ss_pred HHHHHHHHHhCccccc
Confidence 3456777888898764
No 76
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=52.31 E-value=1.4e+02 Score=25.01 Aligned_cols=58 Identities=17% Similarity=0.224 Sum_probs=36.4
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
...|+-+|||.=.....+... ...+.-+|+|- ..++.-++.+.. ..+.+++..|+.
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~-~~~~~~~~~~~~----------------------~~~v~ii~~D~~ 69 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER-AARVTAIEIDP-RLAPRLREKFAA----------------------ADNLTVIHGDAL 69 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc-CCeEEEEECCH-HHHHHHHHHhcc----------------------CCCEEEEECchh
Confidence 358999999987766666554 24667788883 333332322221 246778888887
Q ss_pred Cc
Q 021386 166 DI 167 (313)
Q Consensus 166 ~~ 167 (313)
+.
T Consensus 70 ~~ 71 (169)
T smart00650 70 KF 71 (169)
T ss_pred cC
Confidence 64
No 77
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=52.02 E-value=1.7e+02 Score=25.83 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=21.5
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecc
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF 118 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~ 118 (313)
..|+-+|||.=.....+... .++..++=+|.
T Consensus 89 ~~ilDig~G~G~~~~~l~~~-~~~~~v~~iD~ 119 (251)
T TIGR03534 89 LRVLDLGTGSGAIALALAKE-RPDARVTAVDI 119 (251)
T ss_pred CeEEEEeCcHhHHHHHHHHH-CCCCEEEEEEC
Confidence 47999999998877777654 23445665655
No 78
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=50.55 E-value=40 Score=33.08 Aligned_cols=117 Identities=15% Similarity=0.243 Sum_probs=57.7
Q ss_pred cceEEEeCCCCchhhhh-hccc-CCCCCEEEEecchhHHHHHH--HHHhccccchhhhccccccc--ccCC----cccCC
Q 021386 86 KKQILSLGAGFDTTYFQ-LQAE-GKAPHLYVELDFIEVTSKKA--ALIETHGELKDKVGVTASIS--QAKG----EVLGD 155 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~R-L~~~-~~~~~~~~EvD~p~vi~~K~--~~i~~~~~l~~~~g~~~~~~--~~~~----~l~s~ 155 (313)
..-|+.||+| |-.+-| |... +...++-+|+| |.+++.-+ ..+.+-.. ..+ .++.++ .++. .-..+
T Consensus 290 a~~vLvlGGG-DGLAlRellkyP~~~qI~lVdLD-P~miela~~~~vlr~~N~--~sf-~dpRv~Vv~dDAf~wlr~a~~ 364 (508)
T COG4262 290 ARSVLVLGGG-DGLALRELLKYPQVEQITLVDLD-PRMIELASHATVLRALNQ--GSF-SDPRVTVVNDDAFQWLRTAAD 364 (508)
T ss_pred cceEEEEcCC-chHHHHHHHhCCCcceEEEEecC-HHHHHHhhhhhHhhhhcc--CCc-cCCeeEEEeccHHHHHHhhcc
Confidence 4679999987 777777 3222 12345566666 67777654 44433110 000 011111 0100 01145
Q ss_pred CeEEEeccCCCchh----------HHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHh
Q 021386 156 NYKLLPVDLRDIQM----------LNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASK 210 (313)
Q Consensus 156 ~y~lv~~DL~~~~~----------l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~ 210 (313)
.|..+-+||.|++. +-..+.. .+ ..--+++.+.-..|.+|+.--.+++.+.+
T Consensus 365 ~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~-~l--~e~Gl~VvQags~y~tp~vfw~i~aTik~ 426 (508)
T COG4262 365 MFDVVIVDLPDPSTPSIGRLYSVEFYRLLSR-HL--AETGLMVVQAGSPYFTPRVFWRIDATIKS 426 (508)
T ss_pred cccEEEEeCCCCCCcchhhhhhHHHHHHHHH-hc--CcCceEEEecCCCccCCceeeeehhHHHh
Confidence 67777777777532 1111111 11 12235566666667777766666666655
No 79
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=50.15 E-value=2.5e+02 Score=27.33 Aligned_cols=138 Identities=11% Similarity=0.088 Sum_probs=78.2
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchh-HHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~-vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
..|+-+|||.=.....+... .+.+++=||.-+ .++.=++.+.. -+.+++..|.+
T Consensus 169 ~rVLDIGcG~G~~a~~la~~--~g~~V~giDlS~~~l~~A~~~~~~-----------------------l~v~~~~~D~~ 223 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEH--YGVSVVGVTISAEQQKLAQERCAG-----------------------LPVEIRLQDYR 223 (383)
T ss_pred CEEEEeCCCccHHHHHHHHH--CCCEEEEEeCCHHHHHHHHHHhcc-----------------------CeEEEEECchh
Confidence 57999999988887777654 356677777743 33221111111 11334445543
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEecc------cCCccccc-----cC
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQS------RGCALLGI-----NA 233 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~~------rg~~l~~~-----~~ 233 (313)
+. ...+| ++++-+++.++.......+++.+.+.. |+|.+++-+.. ...+...- ..
T Consensus 224 ~l--------~~~fD-----~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~~~i~~yifp~g~ 290 (383)
T PRK11705 224 DL--------NGQFD-----RIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGC 290 (383)
T ss_pred hc--------CCCCC-----EEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCCCCceeeecCCCc
Confidence 31 11233 456666777887777788888888866 66766654320 01111110 13
Q ss_pred CCCHHHHHHHHHHcCCceeEEcCHHHHHhc
Q 021386 234 TPTLLAKEKLFLDQGWQQAVAWDMLRVYST 263 (313)
Q Consensus 234 ~~t~~~q~~Rf~~~Gw~~~~~~dm~~~y~~ 263 (313)
.|+++...+ +.+.||......++..-|..
T Consensus 291 lps~~~i~~-~~~~~~~v~d~~~~~~hy~~ 319 (383)
T PRK11705 291 LPSVRQIAQ-ASEGLFVMEDWHNFGADYDR 319 (383)
T ss_pred CCCHHHHHH-HHHCCcEEEEEecChhhHHH
Confidence 567666444 45568988777666666553
No 80
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=47.94 E-value=64 Score=28.74 Aligned_cols=174 Identities=18% Similarity=0.251 Sum_probs=96.5
Q ss_pred cCCCCchhHHhhhcCCCc-CCccccchhHHHHHHHHHHHHHHHhcCCCCCCCCCccceEEEeCCCCchhhhhhcccCCCC
Q 021386 32 KGYMKDDYIHLFVRRPVR-RSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAP 110 (313)
Q Consensus 32 ~gy~~Dpfa~~fv~~~~r-r~P~inrG~~~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~ 110 (313)
+-||+--|...+-.=... ....+-.|.-+-.+.++.+++.--...-+++ ...|+-||||-=..-++|...+.+.
T Consensus 18 K~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~-----A~~VlDLGtGNG~~L~~L~~egf~~ 92 (227)
T KOG1271|consen 18 KSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQ-----ADRVLDLGTGNGHLLFQLAKEGFQS 92 (227)
T ss_pred HHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhccc-----ccceeeccCCchHHHHHHHHhcCCC
Confidence 347777787777642111 1334556655666666665554431111110 2379999999999999998875222
Q ss_pred CEEEEecchh-HHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCCchhHHHH---------HHhCCCC
Q 021386 111 HLYVELDFIE-VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEV---------INLANMD 180 (313)
Q Consensus 111 ~~~~EvD~p~-vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~~~~l~~~---------L~~~g~d 180 (313)
...-||+-+ .++. ++-|.++..+ ++..++--.|+.+++++... |.+.++.
T Consensus 93 -~L~GvDYs~~AV~L-A~niAe~~~~------------------~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs 152 (227)
T KOG1271|consen 93 -KLTGVDYSEKAVEL-AQNIAERDGF------------------SNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLS 152 (227)
T ss_pred -CccccccCHHHHHH-HHHHHHhcCC------------------CcceeEEEeeccCCcccccceeEEeecCceeeeecC
Confidence 256778744 3333 4444443322 33356666677765433221 1222333
Q ss_pred CCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEEEEecccCCccccccCCCCHHHHHHHHHHcCCceeE
Q 021386 181 PSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALLGINATPTLLAKEKLFLDQGWQQAV 253 (313)
Q Consensus 181 ~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~~rg~~l~~~~~~~t~~~q~~Rf~~~Gw~~~~ 253 (313)
++.|.== ..+|+. .++++|+ |++.|++. .|.. |.++..++|...||....
T Consensus 153 ~d~~~~r----~~~Y~d--~v~~ll~------~~gifvIt----SCN~-------T~dELv~~f~~~~f~~~~ 202 (227)
T KOG1271|consen 153 PDGPVGR----LVVYLD--SVEKLLS------PGGIFVIT----SCNF-------TKDELVEEFENFNFEYLS 202 (227)
T ss_pred CCCcccc----eeeehh--hHhhccC------CCcEEEEE----ecCc-------cHHHHHHHHhcCCeEEEE
Confidence 3333211 156663 3455543 78888763 3333 778899999988877543
No 81
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=47.29 E-value=2.1e+02 Score=25.58 Aligned_cols=128 Identities=13% Similarity=0.089 Sum_probs=71.2
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
...|+-+|||.-.....+... .++..++=||..+.+-.+.+.. ..+..++..|+.
T Consensus 32 ~~~vLDiGcG~G~~~~~la~~-~~~~~v~gvD~s~~~i~~a~~~------------------------~~~~~~~~~d~~ 86 (258)
T PRK01683 32 PRYVVDLGCGPGNSTELLVER-WPAARITGIDSSPAMLAEARSR------------------------LPDCQFVEADIA 86 (258)
T ss_pred CCEEEEEcccCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHh------------------------CCCCeEEECchh
Confidence 468999999998877666554 2456788888854433332210 123445666664
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec-ccC-------------Ccc--
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ-SRG-------------CAL-- 228 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~-~rg-------------~~l-- 228 (313)
+.. . ...--++++-.++.+++. ...+++.+.+.. |+|.+++--+ ... .++
T Consensus 87 ~~~------~-----~~~fD~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 153 (258)
T PRK01683 87 SWQ------P-----PQALDLIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLMREVAENGPWEQ 153 (258)
T ss_pred ccC------C-----CCCccEEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHHHHHHccCchHH
Confidence 321 0 112235556566777753 345677766655 5666554211 000 000
Q ss_pred ----cc--ccCCCCHHHHHHHHHHcCCce
Q 021386 229 ----LG--INATPTLLAKEKLFLDQGWQQ 251 (313)
Q Consensus 229 ----~~--~~~~~t~~~q~~Rf~~~Gw~~ 251 (313)
.+ ...+++.+...+.+.+.|+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~v 182 (258)
T PRK01683 154 NLPDRGARRAPLPPPHAYYDALAPAACRV 182 (258)
T ss_pred HhccccccCcCCCCHHHHHHHHHhCCCce
Confidence 01 124577888888888889764
No 82
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=46.56 E-value=18 Score=23.58 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=25.8
Q ss_pred CCCEEEEecchhHHHHHHHHHhccccchhhhccc
Q 021386 109 APHLYVELDFIEVTSKKAALIETHGELKDKVGVT 142 (313)
Q Consensus 109 ~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~ 142 (313)
.+..|..-|-|...+ ++.+|+++|+.+++.|.+
T Consensus 4 ~DF~W~~~~ePH~~R-Rk~IL~k~PeIk~L~G~d 36 (39)
T PF08557_consen 4 NDFEWVYTDEPHASR-RKEILKKHPEIKKLMGPD 36 (39)
T ss_pred cccEEeCCCCccHHH-HHHHHHhChHHHHHhCCC
Confidence 356788888887755 455889999999999865
No 83
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=44.86 E-value=56 Score=29.51 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=44.2
Q ss_pred EEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec--ccCCcccccc---CCCCHHHHHHHHHHcCCceeE
Q 021386 185 TFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ--SRGCALLGIN---ATPTLLAKEKLFLDQGWQQAV 253 (313)
Q Consensus 185 Tl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~--~rg~~l~~~~---~~~t~~~q~~Rf~~~Gw~~~~ 253 (313)
-+|-.+-|+.||+.++.-++|+.|.+.. |+|.+++=|- ..|....--. -..|.+...+-|+++|++.+.
T Consensus 124 DlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~~~~lF~~AGl~~v~ 198 (218)
T PF05891_consen 124 DLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEHFRELFKQAGLRLVK 198 (218)
T ss_dssp EEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHHHHHHHHHCT-EEEE
T ss_pred eEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHHHHHHHHHcCCEEEE
Confidence 4666699999999999999999998866 5665555333 1121110000 124667788899999999875
No 84
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=44.21 E-value=2.6e+02 Score=25.79 Aligned_cols=130 Identities=17% Similarity=0.179 Sum_probs=75.7
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDL 164 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL 164 (313)
...|+-+|||-=|-.|-...--..-..++=||. +.+++.=+.+++..+..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~----------------------------- 84 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNN----------------------------- 84 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccccc-----------------------------
Confidence 467999999998888876543111234555665 34444444444432110
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEEEEecccCCccccccCCCCHHHHHHHH
Q 021386 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALLGINATPTLLAKEKLF 244 (313)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~~rg~~l~~~~~~~t~~~q~~Rf 244 (313)
... .+...+.....+.....|+|+=-||.=|+.++-.++++.+-+...+ .+|+-|+ |.|. .|..+....+.+
T Consensus 85 ~~~-~~~~~~~~~~~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~-~LVlVEp--Gt~~----Gf~~i~~aR~~l 156 (274)
T PF09243_consen 85 RNA-EWRRVLYRDFLPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP-VLVLVEP--GTPA----GFRRIAEARDQL 156 (274)
T ss_pred ccc-hhhhhhhcccccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC-cEEEEcC--CChH----HHHHHHHHHHHH
Confidence 000 0111111101122223899999999999988888888888665444 5555576 6665 366667777777
Q ss_pred HHcCCcee
Q 021386 245 LDQGWQQA 252 (313)
Q Consensus 245 ~~~Gw~~~ 252 (313)
.+.|+..+
T Consensus 157 ~~~~~~v~ 164 (274)
T PF09243_consen 157 LEKGAHVV 164 (274)
T ss_pred hhCCCceE
Confidence 77777665
No 85
>COG3580 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.78 E-value=40 Score=32.18 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCCCCCCCCccceEEEeCCCCchhhhhhc----ccCCCCC-EEEEecchh
Q 021386 67 RLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQ----AEGKAPH-LYVELDFIE 120 (313)
Q Consensus 67 ~~v~~fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~----~~~~~~~-~~~EvD~p~ 120 (313)
....+|.++++.-. -+|++|.|||.|.--.-+- .. .+.+ ++.++|--.
T Consensus 262 y~AA~fvak~~nle-----gV~l~SFgCG~Davttd~i~eIl~~-~nk~ytvlkIDE~t 314 (351)
T COG3580 262 YAAAKFVAKHPNLE-----GVQLVSFGCGLDAVTTDLIEEILEG-HNKIYTVLKIDEGT 314 (351)
T ss_pred HHHHHHHhcCCCee-----eEEEeecccCcchhHHHHHHHHHHh-CCCeeEEEEecCCC
Confidence 34678888876421 5899999999998755432 22 2334 788888643
No 86
>PRK06922 hypothetical protein; Provisional
Probab=41.99 E-value=2.7e+02 Score=29.50 Aligned_cols=107 Identities=11% Similarity=0.180 Sum_probs=62.8
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~ 166 (313)
..|+-+|||.=.....+... .++..++=+|....+-.+.+.-... ...+++++.+|..+
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~-~P~~kVtGIDIS~~MLe~Ararl~~--------------------~g~~ie~I~gDa~d 478 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEE-TEDKRIYGIDISENVIDTLKKKKQN--------------------EGRSWNVIKGDAIN 478 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHhhh--------------------cCCCeEEEEcchHh
Confidence 57999999986665566544 3678899999987655444321110 02356777777654
Q ss_pred chhHHHHHHhCCCCCCCCEEEEEecc----cccCC-------hHHHHHHHHHHHhcC-CCcEEEEEec
Q 021386 167 IQMLNEVINLANMDPSLPTFIIAECV----LIYLD-------PDSSRAIVGWASKTF-STAVFFLYEQ 222 (313)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egv----l~YL~-------~~~~~~ll~~la~~f-~~~~~i~ye~ 222 (313)
.. . .+.+..--++++=.+ +.|++ .+...++++.+.+.. |+|.+++.|.
T Consensus 479 Lp---~-----~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 479 LS---S-----SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred Cc---c-----ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 21 1 122222333333222 23543 456778888777655 7788888774
No 87
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=38.98 E-value=2.7e+02 Score=27.94 Aligned_cols=127 Identities=16% Similarity=0.230 Sum_probs=95.7
Q ss_pred cCCCeEEEeccCCCc---------hhHHHHHHhCC-CCC----CCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEE
Q 021386 153 LGDNYKLLPVDLRDI---------QMLNEVINLAN-MDP----SLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFF 218 (313)
Q Consensus 153 ~s~~y~lv~~DL~~~---------~~l~~~L~~~g-~d~----~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i 218 (313)
..++|.++.-.+.-. +.+...|.+-| ||+ ..|.+-=.=||..=-+-.....++..++.+||...++
T Consensus 87 ~rG~YQi~~~~~~p~G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IGVITS~tgAairDIl~~~~rR~P~~~vi 166 (440)
T COG1570 87 PRGDYQIVAESMEPAGLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIGVITSPTGAALRDILHTLSRRFPSVEVI 166 (440)
T ss_pred CCCceEEEEecCCcCChhHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEEEEcCCchHHHHHHHHHHHhhCCCCeEE
Confidence 368899988777632 45667787777 454 4688877889999999999999999999999999999
Q ss_pred EEecccCCccccccCCCCHHHHHHHHHHcC-CceeE----EcCHHHHHhcCCCHHHHHHHhhccCCCcHHHHHHHhcCcE
Q 021386 219 LYEQSRGCALLGINATPTLLAKEKLFLDQG-WQQAV----AWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYC 293 (313)
Q Consensus 219 ~ye~~rg~~l~~~~~~~t~~~q~~Rf~~~G-w~~~~----~~dm~~~y~~~l~~~er~ri~~lE~fDE~Ee~~l~~~HY~ 293 (313)
+|. +.++|-.+-..+-..++++.+.+ .+... .-++.++|. ++.|.-.|- ...++-=
T Consensus 167 v~p----t~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGSiEDLW~--FNdE~vaRA-------------i~~s~iP 227 (440)
T COG1570 167 VYP----TLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGSIEDLWA--FNDEIVARA-------------IAASRIP 227 (440)
T ss_pred EEe----ccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcchHHHHhc--cChHHHHHH-------------HHhCCCC
Confidence 874 56777666667777888888888 44433 478889997 788888776 5555555
Q ss_pred EEEEe
Q 021386 294 VAHAI 298 (313)
Q Consensus 294 i~~a~ 298 (313)
|+-|.
T Consensus 228 vISAV 232 (440)
T COG1570 228 VISAV 232 (440)
T ss_pred eEeec
Confidence 55554
No 88
>PRK14968 putative methyltransferase; Provisional
Probab=38.37 E-value=2.3e+02 Score=23.53 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=22.7
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHH
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSK 124 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~ 124 (313)
..|+-+|||.-.....+... +..++=+|. |++++.
T Consensus 25 ~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~ 60 (188)
T PRK14968 25 DRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVEC 60 (188)
T ss_pred CEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHH
Confidence 57999999988887777654 234444555 444443
No 89
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=37.10 E-value=3.4e+02 Score=25.09 Aligned_cols=141 Identities=16% Similarity=0.169 Sum_probs=82.9
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHH-HHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKK-AALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K-~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
..|+-+|||-=....++... -++++.=|.+-+.+..- ++.+.+. |. .++..++-+|.+
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~--~g~~v~gitlS~~Q~~~a~~~~~~~-------gl------------~~~v~v~~~D~~ 122 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAER--YGCHVTGITLSEEQAEYARERIREA-------GL------------EDRVEVRLQDYR 122 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHH--H--EEEEEES-HHHHHHHHHHHHCS-------TS------------SSTEEEEES-GG
T ss_pred CEEEEeCCCccHHHHHHHHH--cCcEEEEEECCHHHHHHHHHHHHhc-------CC------------CCceEEEEeecc
Confidence 57999999999999998776 25666666664433322 2233321 21 456777778877
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEec---------ccCC--c------
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQ---------SRGC--A------ 227 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~---------~rg~--~------ 227 (313)
+.+. .+| -+++=+++-.+.++.-..+++.+.+.. |+|.+++-.- .+.. +
T Consensus 123 ~~~~--------~fD-----~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~~~~~~~~~~~~i~kyi 189 (273)
T PF02353_consen 123 DLPG--------KFD-----RIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPPYHAERRSSSDFIRKYI 189 (273)
T ss_dssp G-----------S-S-----EEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HHHHHCTTCCCHHHHHHT
T ss_pred ccCC--------CCC-----EEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecccccccchhhcCCCceEEEEee
Confidence 6421 344 245557788888888899999999977 6666554111 1221 1
Q ss_pred cccccCCCCHHHHHHHHHHcCCceeEEcCHHHHHh
Q 021386 228 LLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYS 262 (313)
Q Consensus 228 l~~~~~~~t~~~q~~Rf~~~Gw~~~~~~dm~~~y~ 262 (313)
+||- ..|+++.....+.+.||+.....++..=|.
T Consensus 190 FPgg-~lps~~~~~~~~~~~~l~v~~~~~~~~hY~ 223 (273)
T PF02353_consen 190 FPGG-YLPSLSEILRAAEDAGLEVEDVENLGRHYA 223 (273)
T ss_dssp STTS----BHHHHHHHHHHTT-EEEEEEE-HHHHH
T ss_pred CCCC-CCCCHHHHHHHHhcCCEEEEEEEEcCcCHH
Confidence 2322 356788888888899999988777766654
No 90
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=36.20 E-value=3.1e+02 Score=24.37 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=23.0
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHH
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTS 123 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~ 123 (313)
...|+-+|||.=.....|... +..++-+|. |++++
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~ 78 (251)
T PRK10258 43 FTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLA 78 (251)
T ss_pred CCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHH
Confidence 357999999986554445433 457788887 44443
No 91
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=34.38 E-value=4.5e+02 Score=27.85 Aligned_cols=83 Identities=19% Similarity=0.228 Sum_probs=53.2
Q ss_pred ccchhHHHHHHHHHHHHHHHhcCCCCCCCCCccceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccc
Q 021386 54 INRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHG 133 (313)
Q Consensus 54 inrG~~~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~ 133 (313)
.+.|+++-.+-.+.++.+... ...|++||||.=.....+...+...+.-+|++-..+-..|+.+-.+
T Consensus 518 ~~tG~flDqr~~R~~~~~~~~-----------g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~n-- 584 (702)
T PRK11783 518 LDTGLFLDHRPTRRMIGQMAK-----------GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALN-- 584 (702)
T ss_pred CcceECHHHHHHHHHHHHhcC-----------CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--
Confidence 345777655555555554431 2579999999988877776554334777777777776666655332
Q ss_pred cchhhhcccccccccCCcccCCCeEEEeccCCC
Q 021386 134 ELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (313)
Q Consensus 134 ~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~ 166 (313)
| +...+.+++.+|..+
T Consensus 585 ------g-----------~~~~~v~~i~~D~~~ 600 (702)
T PRK11783 585 ------G-----------LSGRQHRLIQADCLA 600 (702)
T ss_pred ------C-----------CCccceEEEEccHHH
Confidence 1 012467888888754
No 92
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=33.53 E-value=1.1e+02 Score=32.06 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=49.0
Q ss_pred CEEEEE-ecccccCChHHHHHHHHHHHhcCC-CcEEEEEecccCCccccccCCCCHHHHHHHHHHcCCceeEE---cCHH
Q 021386 184 PTFIIA-ECVLIYLDPDSSRAIVGWASKTFS-TAVFFLYEQSRGCALLGINATPTLLAKEKLFLDQGWQQAVA---WDML 258 (313)
Q Consensus 184 PTl~i~-Egvl~YL~~~~~~~ll~~la~~f~-~~~~i~ye~~rg~~l~~~~~~~t~~~q~~Rf~~~Gw~~~~~---~dm~ 258 (313)
-|.+|+ .|+|| +-.+.+..+ ++.... +--+++||- .++.+-|-..--..+++..||+..||++... .|+.
T Consensus 150 ~tYvl~GDGclm---EGvs~EA~s-lAG~l~L~kLIvlyD~-N~IsiDG~~~~~f~ed~~~RfeAyGW~vi~~~DG~D~e 224 (663)
T COG0021 150 YTYVLVGDGCLM---EGVSHEAAS-LAGHLKLGKLIVLYDS-NDISIDGDTSLSFTEDVAKRFEAYGWNVIRVIDGHDLE 224 (663)
T ss_pred eEEEEecCchHh---cccHHHHHH-HHhhcCCCcEEEEEeC-CCceeccCcccccchhHHHHHHhcCCeEEEecCCCCHH
Confidence 355544 67766 444444444 333343 234556885 6777777666666799999999999998854 4577
Q ss_pred HHHhc
Q 021386 259 RVYST 263 (313)
Q Consensus 259 ~~y~~ 263 (313)
+|...
T Consensus 225 ~I~~A 229 (663)
T COG0021 225 AIDKA 229 (663)
T ss_pred HHHHH
Confidence 88775
No 93
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=33.31 E-value=2.1e+02 Score=27.92 Aligned_cols=75 Identities=24% Similarity=0.379 Sum_probs=53.3
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
.+-||-.|||.--+.|--... ..-++|-|.-.++.+.-+++++.+ . -.++...|+.-+.
T Consensus 178 ~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS~MAqyA~~Lv~~N-~------------------~~~rItVI~GKiE 236 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQA--GAKKVYAVEASEMAQYARKLVASN-N------------------LADRITVIPGKIE 236 (517)
T ss_pred CcEEEEecCCccHHHHHHHHh--CcceEEEEehhHHHHHHHHHHhcC-C------------------ccceEEEccCccc
Confidence 367999999999884443333 345789999999999999998864 2 1677888888777
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecc
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECV 192 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egv 192 (313)
+.+ | |.+--++|+|-.
T Consensus 237 die-L----------PEk~DviISEPM 252 (517)
T KOG1500|consen 237 DIE-L----------PEKVDVIISEPM 252 (517)
T ss_pred ccc-C----------chhccEEEeccc
Confidence 753 2 334457778764
No 94
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=32.63 E-value=96 Score=27.58 Aligned_cols=116 Identities=21% Similarity=0.197 Sum_probs=70.8
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCCC
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRD 166 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~ 166 (313)
+-|+-||||.=-..+=...-+...+..+|+|-..+-..|+..-+- ..+..++.+|+++
T Consensus 47 ~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l----------------------~g~v~f~~~dv~~ 104 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEEL----------------------LGDVEFVVADVSD 104 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh----------------------CCceEEEEcchhh
Confidence 579999999988877765554567889999988887777655331 3467889999887
Q ss_pred chhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHH----HHHHHHhcCCCcEEEEEecccCCccccccCCCCHHHHHH
Q 021386 167 IQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRA----IVGWASKTFSTAVFFLYEQSRGCALLGINATPTLLAKEK 242 (313)
Q Consensus 167 ~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~----ll~~la~~f~~~~~i~ye~~rg~~l~~~~~~~t~~~q~~ 242 (313)
... .+| |.+ |.|.--.+ =..++.+.|.- +.-..+++..++.+-..+
T Consensus 105 ~~~--------~~d----tvi--------mNPPFG~~~rhaDr~Fl~~Ale~----------s~vVYsiH~a~~~~f~~~ 154 (198)
T COG2263 105 FRG--------KFD----TVI--------MNPPFGSQRRHADRPFLLKALEI----------SDVVYSIHKAGSRDFVEK 154 (198)
T ss_pred cCC--------ccc----eEE--------ECCCCccccccCCHHHHHHHHHh----------hheEEEeeccccHHHHHH
Confidence 521 122 111 11111000 00111111111 122456777778888888
Q ss_pred HHHHcCCceeEE
Q 021386 243 LFLDQGWQQAVA 254 (313)
Q Consensus 243 Rf~~~Gw~~~~~ 254 (313)
++..+|++....
T Consensus 155 ~~~~~G~~v~~~ 166 (198)
T COG2263 155 FAADLGGTVTHI 166 (198)
T ss_pred HHHhcCCeEEEE
Confidence 889999887654
No 95
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=32.54 E-value=3.8e+02 Score=24.28 Aligned_cols=124 Identities=18% Similarity=0.194 Sum_probs=63.1
Q ss_pred cceEEEeCCCCchhhhhhccc-CCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCC--cc--cCC-CeEE
Q 021386 86 KKQILSLGAGFDTTYFQLQAE-GKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKG--EV--LGD-NYKL 159 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~-~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~--~l--~s~-~y~l 159 (313)
...|+.||.|-=.....+... ....+..+|+|-. |++.=++.+.....- .-.+-..+...++ .+ ..+ .|.+
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~-Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPE-VVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HH-HHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChH-HHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHhccCCcccE
Confidence 467888777655544444332 1246889999964 555544554431110 0000001111111 01 133 7999
Q ss_pred EeccCCCch---------hHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCc
Q 021386 160 LPVDLRDIQ---------MLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTA 215 (313)
Q Consensus 160 v~~DL~~~~---------~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~ 215 (313)
|-.|+.++. .+-+.+.. -+. .-=+++..+-..++.++....+.+.+.+.|+..
T Consensus 154 Ii~D~~dp~~~~~~l~t~ef~~~~~~-~L~--~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~F~~v 215 (246)
T PF01564_consen 154 IIVDLTDPDGPAPNLFTREFYQLCKR-RLK--PDGVLVLQAGSPFLHPELFKSILKTLRSVFPQV 215 (246)
T ss_dssp EEEESSSTTSCGGGGSSHHHHHHHHH-HEE--EEEEEEEEEEETTTTHHHHHHHHHHHHTTSSEE
T ss_pred EEEeCCCCCCCcccccCHHHHHHHHh-hcC--CCcEEEEEccCcccchHHHHHHHHHHHHhCCce
Confidence 999999842 11111111 011 112344444556788999999999999999853
No 96
>PRK00536 speE spermidine synthase; Provisional
Probab=31.69 E-value=4.2e+02 Score=24.51 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=71.8
Q ss_pred cceEEEeCCCCchhhhhh-cccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCC--cccCCCeEEEec
Q 021386 86 KKQILSLGAGFDTTYFQL-QAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKG--EVLGDNYKLLPV 162 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL-~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~--~l~s~~y~lv~~ 162 (313)
++.|+++|+|=--....+ +.+ ..+..+|+|- +|++.=++.+.. ++..+ .++.+..-.. .-..+.|-.|=+
T Consensus 73 pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~-~Vv~~~k~~lP~---~~~~~-~DpRv~l~~~~~~~~~~~fDVIIv 145 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKYD--THVDFVQADE-KILDSFISFFPH---FHEVK-NNKNFTHAKQLLDLDIKKYDLIIC 145 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCcC--CeeEEEECCH-HHHHHHHHHCHH---HHHhh-cCCCEEEeehhhhccCCcCCEEEE
Confidence 688999998854444443 333 4789999997 566666655443 21112 1111111111 112367999999
Q ss_pred cCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCc
Q 021386 163 DLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTA 215 (313)
Q Consensus 163 DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~ 215 (313)
|......+-+.+..+ +. .--+++...-..|+.++....+.+.+++.|+..
T Consensus 146 Ds~~~~~fy~~~~~~-L~--~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~~F~~v 195 (262)
T PRK00536 146 LQEPDIHKIDGLKRM-LK--EDGVFISVAKHPLLEHVSMQNALKNMGDFFSIA 195 (262)
T ss_pred cCCCChHHHHHHHHh-cC--CCcEEEECCCCcccCHHHHHHHHHHHHhhCCce
Confidence 965544443333321 22 223567766678888999999999999999854
No 97
>PRK04266 fibrillarin; Provisional
Probab=30.24 E-value=4e+02 Score=23.84 Aligned_cols=153 Identities=12% Similarity=0.135 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHH--HhcCCCCCCCCCccceEEEeCCCCchhhhhhcccCCCCCEEEEecchh-HHH-HHHHHHhccccch
Q 021386 61 RWAALRRLLYQF--LDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTS-KKAALIETHGELK 136 (313)
Q Consensus 61 R~~~id~~v~~f--l~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~-vi~-~K~~~i~~~~~l~ 136 (313)
|......++..| +.-.+ ...|+-+|||.=.....+... .+.-.++=+|.-+ .++ .++. .++
T Consensus 54 r~~~~~~ll~~~~~l~i~~--------g~~VlD~G~G~G~~~~~la~~-v~~g~V~avD~~~~ml~~l~~~-a~~----- 118 (226)
T PRK04266 54 RSKLAAAILKGLKNFPIKK--------GSKVLYLGAASGTTVSHVSDI-VEEGVVYAVEFAPRPMRELLEV-AEE----- 118 (226)
T ss_pred ccchHHHHHhhHhhCCCCC--------CCEEEEEccCCCHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHH-hhh-----
Confidence 455555556656 22222 357999999976665555443 1233677777744 222 1111 111
Q ss_pred hhhcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCc
Q 021386 137 DKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STA 215 (313)
Q Consensus 137 ~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~ 215 (313)
..|...+-+|..++.... ++....-.+ +.+.. .+.+...+++.+.... |+|
T Consensus 119 -----------------~~nv~~i~~D~~~~~~~~------~l~~~~D~i-~~d~~----~p~~~~~~L~~~~r~LKpGG 170 (226)
T PRK04266 119 -----------------RKNIIPILADARKPERYA------HVVEKVDVI-YQDVA----QPNQAEIAIDNAEFFLKDGG 170 (226)
T ss_pred -----------------cCCcEEEECCCCCcchhh------hccccCCEE-EECCC----ChhHHHHHHHHHHHhcCCCc
Confidence 134566777776531101 122112222 22221 2445556677777655 677
Q ss_pred EEEEEecccCCccccccCCCCHHHHHHHHHHcCCceeEEcCH
Q 021386 216 VFFLYEQSRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDM 257 (313)
Q Consensus 216 ~~i~ye~~rg~~l~~~~~~~t~~~q~~Rf~~~Gw~~~~~~dm 257 (313)
.+++--+.+...... ......+...+.+.++||+.....++
T Consensus 171 ~lvI~v~~~~~d~~~-~~~~~~~~~~~~l~~aGF~~i~~~~l 211 (226)
T PRK04266 171 YLLLAIKARSIDVTK-DPKEIFKEEIRKLEEGGFEILEVVDL 211 (226)
T ss_pred EEEEEEecccccCcC-CHHHHHHHHHHHHHHcCCeEEEEEcC
Confidence 776511112111110 00011134567888899998877665
No 98
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=29.91 E-value=2.5e+02 Score=23.61 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=37.0
Q ss_pred HHHHHHhcCCCCCCCCCccceEEEeCCCCchhhhhhcccCCCC--CEEEEecchhHHHHHHHHHh
Q 021386 68 LLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAP--HLYVELDFIEVTSKKAALIE 130 (313)
Q Consensus 68 ~v~~fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~--~~~~EvD~p~vi~~K~~~i~ 130 (313)
++.+++.... ...|+-||||.=.....+.... +. +..+|++-..+-..|+.+-.
T Consensus 22 lL~~~l~~~~--------~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~ 77 (170)
T PF05175_consen 22 LLLDNLPKHK--------GGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAER 77 (170)
T ss_dssp HHHHHHHHHT--------TCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHH
T ss_pred HHHHHHhhcc--------CCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHh
Confidence 4555555543 3689999999998888776653 44 78888887666555555443
No 99
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=29.38 E-value=53 Score=30.86 Aligned_cols=34 Identities=21% Similarity=0.384 Sum_probs=28.5
Q ss_pred EEEEEecccccCChHHHHHHHHHHHhcC-CCcEEE
Q 021386 185 TFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFF 218 (313)
Q Consensus 185 Tl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i 218 (313)
=+|++..|++|++++.-.++++.+.+.. |+|.++
T Consensus 225 D~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~ 259 (287)
T PRK10611 225 DAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLF 259 (287)
T ss_pred ceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 4788888999999999999999999977 555443
No 100
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=28.35 E-value=3.8e+02 Score=22.88 Aligned_cols=23 Identities=13% Similarity=-0.151 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHHHHcCCceeEEc
Q 021386 233 ATPTLLAKEKLFLDQGWQQAVAW 255 (313)
Q Consensus 233 ~~~t~~~q~~Rf~~~Gw~~~~~~ 255 (313)
.|.+.++..+.+.++||+.+...
T Consensus 144 ~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 144 HFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred ccCcHHHHHHHHHHCCCEEEEEE
Confidence 47799999999999999987643
No 101
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=27.12 E-value=70 Score=29.54 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCccceEEEeCCCCchhhhhhcccCCCCCEEEEecch-hHHHHHHHHHh
Q 021386 61 RWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFI-EVTSKKAALIE 130 (313)
Q Consensus 61 R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p-~vi~~K~~~i~ 130 (313)
|.-.+|.+.+.-+...+. ..-|+-||||+=|.++=+... .++..|+=.|.. ..++.=.+.+.
T Consensus 88 Rl~~Ld~fY~~if~~~~~-------p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~ 150 (251)
T PF07091_consen 88 RLPNLDEFYDEIFGRIPP-------PDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLA 150 (251)
T ss_dssp CGGGHHHHHHHHCCCS----------SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhcCCC-------CchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHH
Confidence 444455555444433222 567999999999995543333 256788777763 34444444443
No 102
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=26.85 E-value=86 Score=27.34 Aligned_cols=34 Identities=18% Similarity=0.490 Sum_probs=28.8
Q ss_pred HHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhc
Q 021386 170 LNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKT 211 (313)
Q Consensus 170 l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~ 211 (313)
+.++|+..|+|.+.+|= |++|+++..++.|..-.
T Consensus 50 ~~dlL~~~Gid~~~lt~--------~~SP~~V~~~llw~~~a 83 (177)
T PF14965_consen 50 WTDLLDVLGIDGSNLTH--------YFSPGGVQTVLLWGAVA 83 (177)
T ss_pred HHHHHHHhCcccccccc--------ccCHHHHHHHHHHHHHH
Confidence 56678889999988875 99999999999987653
No 103
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=26.66 E-value=45 Score=25.01 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=17.8
Q ss_pred CCEEEEEecccccCChHHHHHHHHHHHhcC-CCcE
Q 021386 183 LPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAV 216 (313)
Q Consensus 183 ~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~ 216 (313)
.--++++=.|+.|+ +....+++.+.+.. |+|.
T Consensus 66 ~fD~V~~~~vl~~l--~~~~~~l~~~~~~L~pgG~ 98 (99)
T PF08242_consen 66 SFDLVVASNVLHHL--EDIEAVLRNIYRLLKPGGI 98 (99)
T ss_dssp --SEEEEE-TTS----S-HHHHHHHHTTT-TSS-E
T ss_pred ccceehhhhhHhhh--hhHHHHHHHHHHHcCCCCC
Confidence 34466677999999 66668999888866 4443
No 104
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=26.08 E-value=4.5e+02 Score=23.81 Aligned_cols=111 Identities=13% Similarity=0.096 Sum_probs=58.6
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
..-|.-+|||==..+-.+.. ...++-.|+- +.+-+.++||+.
T Consensus 73 ~~viaD~GCGdA~la~~~~~----~~~V~SfDLv----------------------------------a~n~~Vtacdia 114 (219)
T PF05148_consen 73 SLVIADFGCGDAKLAKAVPN----KHKVHSFDLV----------------------------------APNPRVTACDIA 114 (219)
T ss_dssp TS-EEEES-TT-HHHHH--S-------EEEEESS-----------------------------------SSTTEEES-TT
T ss_pred CEEEEECCCchHHHHHhccc----CceEEEeecc----------------------------------CCCCCEEEecCc
Confidence 56788999996555655532 3344555542 223346889998
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEEEEecccCCccccccCCCCHHHHHHHHH
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALLGINATPTLLAKEKLFL 245 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~~rg~~l~~~~~~~t~~~q~~Rf~ 245 (313)
+.+ | .. -++=++=++|.-|-.+-.+=|.+...-.=++|.+.++|-. + .|.+++.-.+.+.
T Consensus 115 ~vP-L----~~-------~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAEV~--S------Rf~~~~~F~~~~~ 174 (219)
T PF05148_consen 115 NVP-L----ED-------ESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAEVK--S------RFENVKQFIKALK 174 (219)
T ss_dssp S-S-------T-------T-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEEEG--G------G-S-HHHHHHHHH
T ss_pred cCc-C----CC-------CceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEEec--c------cCcCHHHHHHHHH
Confidence 864 2 21 2233455566666666665555554444478988888861 1 2446777788889
Q ss_pred HcCCceeEE
Q 021386 246 DQGWQQAVA 254 (313)
Q Consensus 246 ~~Gw~~~~~ 254 (313)
.+||+...-
T Consensus 175 ~~GF~~~~~ 183 (219)
T PF05148_consen 175 KLGFKLKSK 183 (219)
T ss_dssp CTTEEEEEE
T ss_pred HCCCeEEec
Confidence 999998763
No 105
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=25.93 E-value=5.1e+02 Score=23.64 Aligned_cols=103 Identities=15% Similarity=0.203 Sum_probs=56.6
Q ss_pred cceEEEeC--CCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEecc
Q 021386 86 KKQILSLG--AGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVD 163 (313)
Q Consensus 86 ~~QVV~LG--AGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~D 163 (313)
.+.|+-+| +|+-|..+-...+....+.-+|.| |+..+.-++.+++.+. .++.+++..|
T Consensus 80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~-~~~~~~Ar~~~~~ag~-------------------~~~I~~~~G~ 139 (247)
T PLN02589 80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDIN-RENYELGLPVIQKAGV-------------------AHKIDFREGP 139 (247)
T ss_pred CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCC-HHHHHHHHHHHHHCCC-------------------CCceEEEecc
Confidence 46799998 677777554332211356677777 5666666666765321 4567777777
Q ss_pred CCCchhHHHHHHh----CCCCCCCCEEEEEecccccCC--hHHHHHHHHHHHhcCCCcEEEEEec
Q 021386 164 LRDIQMLNEVINL----ANMDPSLPTFIIAECVLIYLD--PDSSRAIVGWASKTFSTAVFFLYEQ 222 (313)
Q Consensus 164 L~~~~~l~~~L~~----~g~d~~~PTl~i~Egvl~YL~--~~~~~~ll~~la~~f~~~~~i~ye~ 222 (313)
..+ .|.++... ..|| ++|++ .+.-...+..+-.....+.+++.|-
T Consensus 140 a~e--~L~~l~~~~~~~~~fD------------~iFiDadK~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 140 ALP--VLDQMIEDGKYHGTFD------------FIFVDADKDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred HHH--HHHHHHhccccCCccc------------EEEecCCHHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 544 24442221 1233 23333 3333445555556666666676674
No 106
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=25.89 E-value=5.1e+02 Score=23.62 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=28.6
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchh-HHHH
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE-VTSK 124 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~-vi~~ 124 (313)
..|+-+|||.=-.+.++... .+...++=+|+-+ +++.
T Consensus 53 ~~vLDva~GTGd~a~~~~k~-~g~g~v~~~D~s~~ML~~ 90 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKS-VGTGEVVGLDISESMLEV 90 (238)
T ss_pred CEEEEecCCccHHHHHHHHh-cCCceEEEEECCHHHHHH
Confidence 57999999998889998776 2467889999944 4443
No 107
>PLN02823 spermine synthase
Probab=25.70 E-value=6e+02 Score=24.36 Aligned_cols=130 Identities=12% Similarity=0.150 Sum_probs=67.9
Q ss_pred cceEEEeCCCCchhhhhhcc-cCCCCCEEEEecchhHHHHHHHHHhccccchhhhc-ccccccccCC--cc--cCCCeEE
Q 021386 86 KKQILSLGAGFDTTYFQLQA-EGKAPHLYVELDFIEVTSKKAALIETHGELKDKVG-VTASISQAKG--EV--LGDNYKL 159 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~-~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g-~~~~~~~~~~--~l--~s~~y~l 159 (313)
.+.|+.||+|-=.....+.. .+...+..+|+|-. +++.=++.+..... .+. +...+...++ .+ ..++|.+
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~-vv~lar~~~~~~~~---~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQE-VVDFCRKHLTVNRE---AFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHH-HHHHHHHhcccccc---cccCCceEEEEChhHHHHhhCCCCccE
Confidence 46789999886666544332 22356889999975 44443344432100 010 0001111111 01 2467999
Q ss_pred EeccCCCch-----------hHHH-HHHhCCCCCCCCEEEEEecccc--cCChHHHHHHHHHHHhcCCCcEEE-EEec
Q 021386 160 LPVDLRDIQ-----------MLNE-VINLANMDPSLPTFIIAECVLI--YLDPDSSRAIVGWASKTFSTAVFF-LYEQ 222 (313)
Q Consensus 160 v~~DL~~~~-----------~l~~-~L~~~g~d~~~PTl~i~Egvl~--YL~~~~~~~ll~~la~~f~~~~~i-~ye~ 222 (313)
|=+|+.|+. .+-+ .+.. -+.++- +++.++... ...++....+++.+.+.||..... .+.|
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~-~L~p~G--vlv~q~~s~~~~~~~~~~~~i~~tl~~vF~~v~~y~~~vP 254 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKP-KLNPGG--IFVTQAGPAGILTHKEVFSSIYNTLRQVFKYVVPYTAHVP 254 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHH-hcCCCc--EEEEeccCcchhccHHHHHHHHHHHHHhCCCEEEEEeecC
Confidence 999987731 1111 2221 233332 344454332 235777899999999999985433 3444
No 108
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=24.65 E-value=5.9e+02 Score=23.93 Aligned_cols=217 Identities=18% Similarity=0.223 Sum_probs=130.0
Q ss_pred hhhcCC-CCchhHHhhhcCCCc------CCccccchhHHHHHHHHHHHHHHHhcCCCCCCCCCccceEEEeCCCCchhhh
Q 021386 29 CVKKGY-MKDDYIHLFVRRPVR------RSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYF 101 (313)
Q Consensus 29 av~~gy-~~Dpfa~~fv~~~~r------r~P~inrG~~~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGAGlDTr~~ 101 (313)
+++..| ..++|.+.|+.+... ..|-+..+ -+-...++.+.+.+ .-.++ .-|+-+|||-=...-
T Consensus 19 ~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~tL~-eAQ~~k~~~~~~kl-~L~~G--------~~lLDiGCGWG~l~~ 88 (283)
T COG2230 19 NIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLE-EAQRAKLDLILEKL-GLKPG--------MTLLDIGCGWGGLAI 88 (283)
T ss_pred hhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCChH-HHHHHHHHHHHHhc-CCCCC--------CEEEEeCCChhHHHH
Confidence 344444 468888888865211 12222122 23344455555443 33333 579999999999888
Q ss_pred hhcccCCCCCEEEEecchhHHHHHHH-HHhccccchhhhcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCC
Q 021386 102 QLQAEGKAPHLYVELDFIEVTSKKAA-LIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMD 180 (313)
Q Consensus 102 RL~~~~~~~~~~~EvD~p~vi~~K~~-~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~~~~~l~~~L~~~g~d 180 (313)
+.... -+++++=|++-+.+..-.+ .+... |- ..+.+++..|.++.+.. ||
T Consensus 89 ~aA~~--y~v~V~GvTlS~~Q~~~~~~r~~~~-------gl------------~~~v~v~l~d~rd~~e~--------fD 139 (283)
T COG2230 89 YAAEE--YGVTVVGVTLSEEQLAYAEKRIAAR-------GL------------EDNVEVRLQDYRDFEEP--------FD 139 (283)
T ss_pred HHHHH--cCCEEEEeeCCHHHHHHHHHHHHHc-------CC------------CcccEEEeccccccccc--------cc
Confidence 87665 3789999999665544333 34432 21 35788889998885321 44
Q ss_pred CCCCEEEEEecccccCChHHHHHHHHHHHhcCC-CcEEEEEec----cc--C-Cc------cccccCCCCHHHHHHHHHH
Q 021386 181 PSLPTFIIAECVLIYLDPDSSRAIVGWASKTFS-TAVFFLYEQ----SR--G-CA------LLGINATPTLLAKEKLFLD 246 (313)
Q Consensus 181 ~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~-~~~~i~ye~----~r--g-~~------l~~~~~~~t~~~q~~Rf~~ 246 (313)
=++|=|.+-|+..+.-...++.+.+..+ +|.++...- .. + .+ .|| ...|++....+.+.+
T Consensus 140 -----rIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPg-G~lPs~~~i~~~~~~ 213 (283)
T COG2230 140 -----RIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPG-GELPSISEILELASE 213 (283)
T ss_pred -----eeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccccchHHHHHhCCCC-CcCCCHHHHHHHHHh
Confidence 2678889999999999999999999885 565554322 01 1 11 111 135677777777899
Q ss_pred cCCceeEEcCHHHHHhc-------CCCHHHHHHHhhccCCCcHHHHHHHhcCcEEE
Q 021386 247 QGWQQAVAWDMLRVYST-------FINPQERRRIERLELFDEFEEWHMMQEHYCVA 295 (313)
Q Consensus 247 ~Gw~~~~~~dm~~~y~~-------~l~~~er~ri~~lE~fDE~Ee~~l~~~HY~i~ 295 (313)
+||.+.....+..=|.. -+ .+.+.++..+ +|| ++..+-.||.-.
T Consensus 214 ~~~~v~~~~~~~~hYa~Tl~~W~~~f-~~~~~~a~~~--~~e--~~~r~w~~yl~~ 264 (283)
T COG2230 214 AGFVVLDVESLRPHYARTLRLWRERF-EANRDEAIAL--YDE--RFYRMWELYLAA 264 (283)
T ss_pred cCcEEehHhhhcHHHHHHHHHHHHHH-HHHHHHHHHH--hhH--HHHHHHHHHHHH
Confidence 99998765444433332 12 2333344333 554 566666666433
No 109
>PRK05785 hypothetical protein; Provisional
Probab=24.50 E-value=5e+02 Score=23.02 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=25.6
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecch-hHHH
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFI-EVTS 123 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p-~vi~ 123 (313)
..|+-||||.=.....|... .+..++=||+- ++++
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~--~~~~v~gvD~S~~Ml~ 88 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKV--FKYYVVALDYAENMLK 88 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHh--cCCEEEEECCCHHHHH
Confidence 58999999999877777654 14578888884 4444
No 110
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=23.61 E-value=3.4e+02 Score=20.71 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=40.8
Q ss_pred eEEEeccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEEEEecccCCccccccCCCC
Q 021386 157 YKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALLGINATPT 236 (313)
Q Consensus 157 y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~~rg~~l~~~~~~~t 236 (313)
+..+-+|..+.+. |+.+|+.. .-+++++=. +.+....+...+.+.+|...++..- .
T Consensus 42 ~~~i~gd~~~~~~----l~~a~i~~-a~~vv~~~~-----~d~~n~~~~~~~r~~~~~~~ii~~~--------------~ 97 (116)
T PF02254_consen 42 VEVIYGDATDPEV----LERAGIEK-ADAVVILTD-----DDEENLLIALLARELNPDIRIIARV--------------N 97 (116)
T ss_dssp SEEEES-TTSHHH----HHHTTGGC-ESEEEEESS-----SHHHHHHHHHHHHHHTTTSEEEEEE--------------S
T ss_pred cccccccchhhhH----HhhcCccc-cCEEEEccC-----CHHHHHHHHHHHHHHCCCCeEEEEE--------------C
Confidence 6688899999654 44457763 334444322 4555556666677778887766411 0
Q ss_pred HHHHHHHHHHcCCcee
Q 021386 237 LLAKEKLFLDQGWQQA 252 (313)
Q Consensus 237 ~~~q~~Rf~~~Gw~~~ 252 (313)
-+...+.|.++|-+.+
T Consensus 98 ~~~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 98 DPENAELLRQAGADHV 113 (116)
T ss_dssp SHHHHHHHHHTT-SEE
T ss_pred CHHHHHHHHHCCcCEE
Confidence 1244566777776654
No 111
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=23.16 E-value=4.5e+02 Score=22.00 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=23.7
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHH
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTS 123 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~ 123 (313)
..|+.||||.=.....+...+ + .++=+|. |+.++
T Consensus 21 ~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~ 55 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVK 55 (179)
T ss_pred CeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHH
Confidence 469999999998887777652 2 5666665 44443
No 112
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=22.99 E-value=4.6e+02 Score=22.10 Aligned_cols=120 Identities=12% Similarity=0.077 Sum_probs=61.4
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecc-hhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDF-IEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
..|+-+|||.=.....+... .++..++=+|. |+.++.=++.+... + ..+.+++..|..
T Consensus 33 ~~vLDiG~G~G~~~~~la~~-~~~~~v~~vD~s~~~~~~a~~n~~~~-------~-------------~~~i~~~~~d~~ 91 (187)
T PRK08287 33 KHLIDVGAGTGSVSIEAALQ-FPSLQVTAIERNPDALRLIKENRQRF-------G-------------CGNIDIIPGEAP 91 (187)
T ss_pred CEEEEECCcCCHHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHh-------C-------------CCCeEEEecCch
Confidence 57999999987666555433 13344544554 33333222222211 1 124555665542
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEEEecccCCccccccCCCCHHHHHHHH
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFLYEQSRGCALLGINATPTLLAKEKLF 244 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~ye~~rg~~l~~~~~~~t~~~q~~Rf 244 (313)
. . +... --++++-+...+ ...+++++.+.. |+|.++.... .+++.+...+.+
T Consensus 92 ~------~-----~~~~-~D~v~~~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~----------~~~~~~~~~~~l 144 (187)
T PRK08287 92 I------E-----LPGK-ADAIFIGGSGGN-----LTAIIDWSLAHLHPGGRLVLTFI----------LLENLHSALAHL 144 (187)
T ss_pred h------h-----cCcC-CCEEEECCCccC-----HHHHHHHHHHhcCCCeEEEEEEe----------cHhhHHHHHHHH
Confidence 1 0 1111 223444444333 345777776666 5666554221 134556667788
Q ss_pred HHcCCceeEE
Q 021386 245 LDQGWQQAVA 254 (313)
Q Consensus 245 ~~~Gw~~~~~ 254 (313)
.++||..+..
T Consensus 145 ~~~g~~~~~~ 154 (187)
T PRK08287 145 EKCGVSELDC 154 (187)
T ss_pred HHCCCCcceE
Confidence 8999976553
No 113
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=22.93 E-value=99 Score=27.25 Aligned_cols=56 Identities=16% Similarity=0.292 Sum_probs=34.8
Q ss_pred CCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEEE
Q 021386 154 GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFL 219 (313)
Q Consensus 154 s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ 219 (313)
..+..+...||.+... ....=-+|++=-||+|++++...++++.+.....++.+++
T Consensus 117 r~~V~F~~~NL~~~~~----------~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~ 172 (196)
T PF01739_consen 117 RKMVRFRRHNLLDPDP----------PFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLF 172 (196)
T ss_dssp HTTEEEEE--TT-S----------------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEE
T ss_pred cCceEEEecccCCCCc----------ccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEE
Confidence 3567777777776211 1123358899999999999999999999999775444443
No 114
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=22.23 E-value=3.7e+02 Score=25.29 Aligned_cols=87 Identities=9% Similarity=0.199 Sum_probs=60.6
Q ss_pred CCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEE-EEecccccCChHHHHHHHHHHHhcCCCcEEEEEecccCCcccccc
Q 021386 154 GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFI-IAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALLGIN 232 (313)
Q Consensus 154 s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~-i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~~rg~~l~~~~ 232 (313)
..+|-.-+.+..+.+.+...++++. ..+.|.++ ++++.+.|+..+....++..+++...--..+-+|
T Consensus 15 ~~~yAV~AfN~~n~e~~~avi~AAe-e~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLD----------- 82 (286)
T PRK12738 15 ANGYAVPAFNIHNAETIQAILEVCS-EMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLD----------- 82 (286)
T ss_pred HCCceEEEEEeCCHHHHHHHHHHHH-HHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCCEEEECC-----------
Confidence 5688899999999888888876644 23467666 6699999999999999999988865322223333
Q ss_pred CCCCHHHHHHHHHHcCCceeE
Q 021386 233 ATPTLLAKEKLFLDQGWQQAV 253 (313)
Q Consensus 233 ~~~t~~~q~~Rf~~~Gw~~~~ 253 (313)
+..+.+ ...+-.++||+.+-
T Consensus 83 Hg~~~e-~i~~ai~~GFtSVM 102 (286)
T PRK12738 83 HHESLD-DIRRKVHAGVRSAM 102 (286)
T ss_pred CCCCHH-HHHHHHHcCCCeEe
Confidence 444555 44455566887653
No 115
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=21.97 E-value=5.9e+02 Score=25.27 Aligned_cols=114 Identities=14% Similarity=0.216 Sum_probs=81.7
Q ss_pred CCCeEEEeccCCCc---------hhHHHHHHhCC-CCC----CCCEEEEEecccccCChHHHHHHHHHHHhcCCCcEEEE
Q 021386 154 GDNYKLLPVDLRDI---------QMLNEVINLAN-MDP----SLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFL 219 (313)
Q Consensus 154 s~~y~lv~~DL~~~---------~~l~~~L~~~g-~d~----~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ 219 (313)
..+|.++.-|+... +.+.+.|.+-| ||+ ..|.+.--=||..=-+-.....+++.+..++|...++.
T Consensus 82 ~G~~ql~v~~i~~~G~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~i~vits~~~aa~~D~~~~~~~r~p~~~~~~ 161 (432)
T TIGR00237 82 RGDYQIICFEMQPAGEGLLQLAYEQLKEKLAAEGLFDQEYKKPLPHFPKRVGVITSQTGAALADILHILKRRDPSLKVVI 161 (432)
T ss_pred CCcEEEEEEEeccCChHHHHHHHHHHHHHHHHCCCCCchhcCCCCCCCCEEEEEeCCccHHHHHHHHHHHhhCCCceEEE
Confidence 56699998888742 35666777778 554 36666666777888888999999999999999888887
Q ss_pred EecccCCccccccCCCCHHHHHHHHHHcC-CceeE----EcCHHHHHhcCCCHHHHHHH
Q 021386 220 YEQSRGCALLGINATPTLLAKEKLFLDQG-WQQAV----AWDMLRVYSTFINPQERRRI 273 (313)
Q Consensus 220 ye~~rg~~l~~~~~~~t~~~q~~Rf~~~G-w~~~~----~~dm~~~y~~~l~~~er~ri 273 (313)
| .++++|-.+-+++-..++++...+ ++++. .-++.++|- ++.++-.|.
T Consensus 162 ~----~~~vQG~~a~~~i~~al~~~~~~~~~dviii~RGGGs~eDL~~--Fn~e~~~ra 214 (432)
T TIGR00237 162 Y----PTLVQGEGAVQSIVESIELANTKNECDVLIVGRGGGSLEDLWS--FNDEKVARA 214 (432)
T ss_pred e----cccccCccHHHHHHHHHHHhhcCCCCCEEEEecCCCCHHHhhh--cCcHHHHHH
Confidence 6 467888777777777777776544 56544 356677775 555555443
No 116
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=21.51 E-value=5.7e+02 Score=25.05 Aligned_cols=87 Identities=17% Similarity=0.176 Sum_probs=58.9
Q ss_pred CchhHHHHHHhCCCCCC----CCEEEEEecccc---------cCChHHHHHHHHHHHhcCCCcEEEEEecccCCccc---
Q 021386 166 DIQMLNEVINLANMDPS----LPTFIIAECVLI---------YLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALL--- 229 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~----~PTl~i~Egvl~---------YL~~~~~~~ll~~la~~f~~~~~i~ye~~rg~~l~--- 229 (313)
|.+++.+.++..+|.++ .|||+|----|. --+|++.-.|+..+-+..|+=..+ |--+|.+||+
T Consensus 304 DieqF~E~FenP~FR~DGLKiYPTLVIrGTGLyELWKtgrYk~Y~p~~LvdlvArILalVPPWtRv-YRvQRDIPMpLVs 382 (554)
T KOG2535|consen 304 DIEQFKEYFENPAFRPDGLKIYPTLVIRGTGLYELWKTGRYKSYSPSALVDLVARILALVPPWTRV-YRVQRDIPMPLVS 382 (554)
T ss_pred hHHHHHHHhcCcCcCCCcceecceEEEecccHHHHHhcCCcccCCHHHHHHHHHHHHhhCCchhhe-eeeccCCCccccc
Confidence 44677777888888776 799998743333 235777777777777777764333 5446889987
Q ss_pred -cccCCCCHHHHHHHHHHcCCceeE
Q 021386 230 -GINATPTLLAKEKLFLDQGWQQAV 253 (313)
Q Consensus 230 -~~~~~~t~~~q~~Rf~~~Gw~~~~ 253 (313)
|+++-.--|-...|++++|-+...
T Consensus 383 SGVe~GNlRElAlarMkdlg~~CRD 407 (554)
T KOG2535|consen 383 SGVEHGNLRELALARMKDLGTKCRD 407 (554)
T ss_pred cccccCCHHHHHHHHHHHhCccchh
Confidence 444444446678899999987543
No 117
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=21.18 E-value=3.9e+02 Score=25.06 Aligned_cols=87 Identities=13% Similarity=0.200 Sum_probs=60.1
Q ss_pred CCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEE-EEecccccCChHHHHHHHHHHHhcCCCcEEEEEecccCCcccccc
Q 021386 154 GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFI-IAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALLGIN 232 (313)
Q Consensus 154 s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~-i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~~rg~~l~~~~ 232 (313)
..+|-.-+.+..+.+++...++++.- ...|.++ ++++.+-|+..+....++..+++...--..+-+|
T Consensus 13 ~~~yAV~AfN~~n~e~~~avi~AAee-~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLD----------- 80 (282)
T TIGR01858 13 AGGYAVPAFNIHNLETIQAVVETAAE-MRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLD----------- 80 (282)
T ss_pred HcCCeEEEEEeCCHHHHHHHHHHHHH-hCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECC-----------
Confidence 46888889999999888888776542 3467665 5699999999898888999888865322333333
Q ss_pred CCCCHHHHHHHHHHcCCceeE
Q 021386 233 ATPTLLAKEKLFLDQGWQQAV 253 (313)
Q Consensus 233 ~~~t~~~q~~Rf~~~Gw~~~~ 253 (313)
+..+. +...+-.++||+.+-
T Consensus 81 Hg~~~-e~i~~ai~~GFtSVM 100 (282)
T TIGR01858 81 HHESL-DDIRQKVHAGVRSAM 100 (282)
T ss_pred CCCCH-HHHHHHHHcCCCEEe
Confidence 33343 345566667887653
No 118
>PF09861 DUF2088: Domain of unknown function (DUF2088); InterPro: IPR018657 This domain, found in various hypothetical proteins, has no known function. ; PDB: 2YJG_B.
Probab=21.13 E-value=4.4e+02 Score=23.36 Aligned_cols=64 Identities=16% Similarity=0.074 Sum_probs=36.4
Q ss_pred CCeEEEeccCCCch-------hHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHH-HHHhcCCCcEEEEEe
Q 021386 155 DNYKLLPVDLRDIQ-------MLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVG-WASKTFSTAVFFLYE 221 (313)
Q Consensus 155 ~~y~lv~~DL~~~~-------~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~-~la~~f~~~~~i~ye 221 (313)
.+..++--|.+... .+-+.|.++|+.....|++++-|.=--+++++..+++- .+.+.+ .++..|
T Consensus 55 ~~V~Ivv~D~TRp~p~~~il~~ll~~L~~~Gv~~~~i~ii~A~G~Hr~~t~ee~~~~lG~~i~~~~---~v~~Hd 126 (204)
T PF09861_consen 55 KRVAIVVDDITRPTPSDLILPALLEELEEAGVKDEDITIIIALGTHRPMTEEELKQILGEEIYERV---RVVNHD 126 (204)
T ss_dssp SEEEEEEE-TTS---HHHHHHHHHHHHHT-T-TT-EEEEEEE-TTS----HHHHHHHH-HHHHHHS---EEEE--
T ss_pred CeEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCccCEEEEEeCCCCCCCCHHHHHHHhhhhhcCce---EEEecC
Confidence 55666666887642 34556788899999999999999999999999999887 444433 445443
No 119
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=21.02 E-value=3.5e+02 Score=25.41 Aligned_cols=87 Identities=14% Similarity=0.225 Sum_probs=60.7
Q ss_pred CCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEE-EEecccccCChHHHHHHHHHHHhcCCCcEEEEEecccCCcccccc
Q 021386 154 GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFI-IAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQSRGCALLGIN 232 (313)
Q Consensus 154 s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~-i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~ye~~rg~~l~~~~ 232 (313)
..+|-.-+.+..+.+++...++++. ..+.|.++ ++++.+-|...+....++..+++...--..+-+|
T Consensus 15 ~~~yaV~AfN~~n~e~~~avi~AAe-e~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VPV~lHLD----------- 82 (284)
T PRK09195 15 RGGYAVPAFNIHNLETMQVVVETAA-ELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHPLALHLD----------- 82 (284)
T ss_pred HcCceEEEEEeCCHHHHHHHHHHHH-HhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCCEEEECC-----------
Confidence 5688889999999988888887654 23477655 5688999999888888888888865322333333
Q ss_pred CCCCHHHHHHHHHHcCCceeE
Q 021386 233 ATPTLLAKEKLFLDQGWQQAV 253 (313)
Q Consensus 233 ~~~t~~~q~~Rf~~~Gw~~~~ 253 (313)
+..+. +...+..++||+.+-
T Consensus 83 Hg~~~-e~i~~Ai~~GftSVM 102 (284)
T PRK09195 83 HHEKF-DDIAQKVRSGVRSVM 102 (284)
T ss_pred CCCCH-HHHHHHHHcCCCEEE
Confidence 33343 445666677997754
No 120
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=20.84 E-value=6.3e+02 Score=22.86 Aligned_cols=89 Identities=17% Similarity=0.249 Sum_probs=54.7
Q ss_pred cceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccccccccCCcccCCCeEEEeccCC
Q 021386 86 KKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLR 165 (313)
Q Consensus 86 ~~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~~~~~~~~~l~s~~y~lv~~DL~ 165 (313)
...||-+|+|.=..-..|...+ .++..+|.|-. .++ .|++ .+. ..++++++..|..
T Consensus 31 ~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~-~~~----~L~~------~~~------------~~~~~~vi~~D~l 86 (262)
T PF00398_consen 31 GDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPD-LAK----HLKE------RFA------------SNPNVEVINGDFL 86 (262)
T ss_dssp TSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHH-HHH----HHHH------HCT------------TCSSEEEEES-TT
T ss_pred CCEEEEeCCCCccchhhHhccc-CcceeecCcHh-HHH----HHHH------Hhh------------hcccceeeecchh
Confidence 4789999999988877776653 67899999942 222 2221 111 1578999999998
Q ss_pred CchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHh
Q 021386 166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASK 210 (313)
Q Consensus 166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~ 210 (313)
+.+.-.. ..+.+.++++= +.| ..+..+|..+-.
T Consensus 87 ~~~~~~~-------~~~~~~~vv~N--lPy---~is~~il~~ll~ 119 (262)
T PF00398_consen 87 KWDLYDL-------LKNQPLLVVGN--LPY---NISSPILRKLLE 119 (262)
T ss_dssp TSCGGGH-------CSSSEEEEEEE--ETG---TGHHHHHHHHHH
T ss_pred ccccHHh-------hcCCceEEEEE--ecc---cchHHHHHHHhh
Confidence 8653221 14567777763 444 334455544443
No 121
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=20.65 E-value=2.2e+02 Score=26.34 Aligned_cols=79 Identities=10% Similarity=0.169 Sum_probs=51.4
Q ss_pred CCCCCCEEEEEecccccC----ChHHHHHHHHHHHhcCC---CcEEEEEec-------------------ccC---Cccc
Q 021386 179 MDPSLPTFIIAECVLIYL----DPDSSRAIVGWASKTFS---TAVFFLYEQ-------------------SRG---CALL 229 (313)
Q Consensus 179 ~d~~~PTl~i~Egvl~YL----~~~~~~~ll~~la~~f~---~~~~i~ye~-------------------~rg---~~l~ 229 (313)
+...-..+.+..=+|.+. .+++..++++.+.+.+| ...-++|-- +.+ .-+-
T Consensus 98 ~~~~F~~i~~g~PLL~~~g~~~~~~D~~~va~aL~~~~~~~~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~~v~vg 177 (262)
T PF06180_consen 98 YKHDFKKIVLGRPLLYTMGQENSPEDYEAVAEALAEEFPKKRKDEAVVLMGHGTPHPANAAYSALQAMLKKHGYPNVFVG 177 (262)
T ss_dssp HCCCSSEEEEE--SCSS-----SHHHHHHHHHHHHCCS-TT-TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-TTEEEE
T ss_pred hhccCCeEEecccccccccccCChHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCCeEEEE
Confidence 344456777777655541 57788888888888877 333333322 222 3466
Q ss_pred cccCCCCHHHHHHHHHHcCCceeEEcCH
Q 021386 230 GINATPTLLAKEKLFLDQGWQQAVAWDM 257 (313)
Q Consensus 230 ~~~~~~t~~~q~~Rf~~~Gw~~~~~~dm 257 (313)
+++.||++++.+.|+++.|.+.+....+
T Consensus 178 tvEG~P~~~~vi~~L~~~g~k~V~L~Pl 205 (262)
T PF06180_consen 178 TVEGYPSLEDVIARLKKKGIKKVHLIPL 205 (262)
T ss_dssp ETTSSSBHHHHHHHHHHHT-SEEEEEEE
T ss_pred EeCCCCCHHHHHHHHHhcCCCeEEEEec
Confidence 8889999999999999999998875433
No 122
>cd02756 MopB_Arsenite-Ox Arsenite oxidase (Arsenite-Ox) oxidizes arsenite to the less toxic arsenate; it transfers the electrons obtained from the oxidation of arsenite towards the soluble periplasmic electron carriers cytochrome c and/or amicyanin. Arsenite oxidase is a heterodimeric enzyme containing a large and a small subunit. The large catalytic subunit harbors the molybdopterin cofactor and the [3Fe-4S] cluster; and the small subunit belongs to the structural class of the Rieske proteins. The small subunit is not included in this alignment. Members of MopB_Arsenite-Ox CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=20.51 E-value=52 Score=34.77 Aligned_cols=37 Identities=14% Similarity=0.332 Sum_probs=30.2
Q ss_pred ccceEEEeCCCCchhhhhhcccC--CCCCEEEEecchhH
Q 021386 85 TKKQILSLGAGFDTTYFQLQAEG--KAPHLYVELDFIEV 121 (313)
Q Consensus 85 ~~~QVV~LGAGlDTr~~RL~~~~--~~~~~~~EvD~p~v 121 (313)
..||+++.||||+.--|-....+ .++-.-|.+||...
T Consensus 15 ~~c~~~~vgcgy~~y~w~~~~~gg~~~~~n~~~~d~~~~ 53 (676)
T cd02756 15 VTCHFCIVGCGYHVYVWPVGEEGGPSPGQNAIGYDLVDQ 53 (676)
T ss_pred eeeeEEeeccCceeeeCCCCCcCCCCcccCccccccccc
Confidence 47999999999999888876654 56667899999754
No 123
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=20.46 E-value=52 Score=31.19 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=16.4
Q ss_pred ceEEEeCCCCchhhhhhccc
Q 021386 87 KQILSLGAGFDTTYFQLQAE 106 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~ 106 (313)
.-.-|||.|||+...-|...
T Consensus 10 ASSANlGpGFD~lGlAl~~~ 29 (299)
T COG0083 10 ASSANLGPGFDVLGLALDLY 29 (299)
T ss_pred ecccccCCCccceeeecccc
Confidence 34679999999998888765
No 124
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=20.39 E-value=3.1e+02 Score=25.65 Aligned_cols=75 Identities=8% Similarity=-0.030 Sum_probs=50.5
Q ss_pred CCEEEEEecccccCChHHHHHHHHHHHhcC-CCcEEEE---EecccCCccccccCCCCHHHHHHHHHHcCCceeEEcCH
Q 021386 183 LPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAVFFL---YEQSRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDM 257 (313)
Q Consensus 183 ~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~~i~---ye~~rg~~l~~~~~~~t~~~q~~Rf~~~Gw~~~~~~dm 257 (313)
.|.--.+.-...|.+++++.++++.+.+.= |-..+++ |....|.=-..-..||++.+.++++.+.|++.+...+.
T Consensus 14 ~p~W~~W~~~~~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 14 SPIWSTWARYKADINQETVLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred CCccCChhhhccCcCHHHHHHHHHHHHHcCCCCCeEEeCCCccccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECC
Confidence 444445677788999999999999988743 4333332 21122221223347999999999999999998765443
No 125
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=20.32 E-value=6.1e+02 Score=22.46 Aligned_cols=146 Identities=12% Similarity=0.084 Sum_probs=82.6
Q ss_pred ceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchh--hhcccccccccCCcccCCCeEEEeccC
Q 021386 87 KQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKD--KVGVTASISQAKGEVLGDNYKLLPVDL 164 (313)
Q Consensus 87 ~QVV~LGAGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~--~~g~~~~~~~~~~~l~s~~y~lv~~DL 164 (313)
..|+.+|||.-.-+-.|... +..++=||+-++--.|.. .++..... ..|.. ......+.++.-+|+
T Consensus 39 ~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~--~~~~l~~~~~~~~~~-------~~~~~~~v~~~~~D~ 106 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFF--AENGLTPQTRQSGEF-------EHYQAGEITIYCGDF 106 (218)
T ss_pred CeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHH--HHcCCCccccccccc-------cccccCceEEEECcc
Confidence 57999999998888878664 677888898766444421 11110000 00000 001245677788888
Q ss_pred CCchhHHHHHHhCCCCCCCCEEEEEecccccCChHHHHHHHHHHHhcC-CCcE--EEEEecccCCccccccCCCCHHHHH
Q 021386 165 RDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTF-STAV--FFLYEQSRGCALLGINATPTLLAKE 241 (313)
Q Consensus 165 ~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f-~~~~--~i~ye~~rg~~l~~~~~~~t~~~q~ 241 (313)
.+... . +...-.+++-.++++-++++.=.+.++.+.+.. |+|. ++.+... ...+.|-...-|.+...
T Consensus 107 ~~l~~-------~--~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~-~~~~~gPp~~~~~~el~ 176 (218)
T PRK13255 107 FALTA-------A--DLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYP-QEELAGPPFSVSDEEVE 176 (218)
T ss_pred cCCCc-------c--cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeC-CccCCCCCCCCCHHHHH
Confidence 77421 0 111336777788899999999999999999977 5543 3233220 01111111123566666
Q ss_pred HHHHHcCCceeEEc
Q 021386 242 KLFLDQGWQQAVAW 255 (313)
Q Consensus 242 ~Rf~~~Gw~~~~~~ 255 (313)
+.|.. +|+.....
T Consensus 177 ~~~~~-~~~i~~~~ 189 (218)
T PRK13255 177 ALYAG-CFEIELLE 189 (218)
T ss_pred HHhcC-CceEEEee
Confidence 66643 37665433
No 126
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=20.15 E-value=8.1e+02 Score=23.80 Aligned_cols=100 Identities=17% Similarity=0.223 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCccceEEEeCCCCchh-hhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhh
Q 021386 60 ARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTT-YFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDK 138 (313)
Q Consensus 60 ~R~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGAGlDTr-~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~ 138 (313)
+||.+-+..+.+-=.-+. .+-|+..|||..=. -|-.+. ...+++=||.-++...+.+++..+..
T Consensus 43 VRt~aYr~~i~~n~~lf~--------dK~VlDVGcGtGILS~F~akA---GA~~V~aVe~S~ia~~a~~iv~~N~~---- 107 (346)
T KOG1499|consen 43 VRTLAYRNAILQNKHLFK--------DKTVLDVGCGTGILSMFAAKA---GARKVYAVEASSIADFARKIVKDNGL---- 107 (346)
T ss_pred hhHHHHHHHHhcchhhcC--------CCEEEEcCCCccHHHHHHHHh---CcceEEEEechHHHHHHHHHHHhcCc----
Confidence 688887776633211222 36899999997666 333333 36789999999999999999987532
Q ss_pred hcccccccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEEecccccCChH
Q 021386 139 VGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPD 199 (313)
Q Consensus 139 ~g~~~~~~~~~~~l~s~~y~lv~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~ 199 (313)
....+.+...+.+.. +....=-++|+|-.=.+|--+
T Consensus 108 ---------------~~ii~vi~gkvEdi~----------LP~eKVDiIvSEWMGy~Ll~E 143 (346)
T KOG1499|consen 108 ---------------EDVITVIKGKVEDIE----------LPVEKVDIIVSEWMGYFLLYE 143 (346)
T ss_pred ---------------cceEEEeecceEEEe----------cCccceeEEeehhhhHHHHHh
Confidence 233455555544431 222344678888776666533
Done!