BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021388
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 526 bits (1355), Expect = e-150, Method: Compositional matrix adjust.
Identities = 255/313 (81%), Positives = 281/313 (89%)
Query: 1 MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAE 60
ME+IGVLM CPM+TYLEQEL++RF LF++WT + FL Q +IRAVVGN+ AGADAE
Sbjct: 21 MEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAE 80
Query: 61 LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
LIDALPKLEIVSSFSVGLDKVD++KC+EKGVRVTNTPDVLTDDVADLAIGL+LAVLRR+C
Sbjct: 81 LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 140
Query: 121 ESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN 180
E D+YVR G WK GD+KLTTKF+GK VGIIGLGRIG+AVA+RAEAF CPI+Y+SR++KPN
Sbjct: 141 ECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 200
Query: 181 LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERE 240
Y YY SVVELASN ILVVACPLT ET HIINREVIDALGPKGVLINIGRGPHVDE E
Sbjct: 201 TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPE 260
Query: 241 LVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
LVSALVEGRLGGAGLDVFE EP VPE+LFGLENVVL+PHVGSGTVETRK MADLV+GNLE
Sbjct: 261 LVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLE 320
Query: 301 AHFLNKPLLTPVV 313
AHF KPLLTPVV
Sbjct: 321 AHFSGKPLLTPVV 333
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/299 (41%), Positives = 180/299 (60%), Gaps = 2/299 (0%)
Query: 6 VLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL 65
+L+ P ++ EL+R +++ + + +D+ L+A +IRAV AG E + L
Sbjct: 33 LLLVEPXXPFVXDELQRNYSVHRLYQAADRPA-LEAALPSIRAVATGGGAGLSNEWXEKL 91
Query: 66 PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRY 125
P L I++ VG DKVD+ + + + + VT TP VL DDVADL I L LAVLRR+ + DR
Sbjct: 92 PSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRL 151
Query: 126 VRSGKWKKGDY-KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK 184
VR G+W G+ L GK +G++GLG+IG A+A RAEAF + Y++R+ + +
Sbjct: 152 VREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVDWI 211
Query: 185 YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSA 244
+ S V+LA + +L V + T++I++ ++ ALGP+G+++N+ RG VDE L+ A
Sbjct: 212 AHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEA 271
Query: 245 LVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHF 303
L G + GAGLDVF NEP + E N VL PH GS TVETR LVL NL AHF
Sbjct: 272 LKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGSATVETRXAXGKLVLANLAAHF 330
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 125/274 (45%), Positives = 171/274 (62%), Gaps = 9/274 (3%)
Query: 37 QFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNT 96
+ L + + A+V + D E+ + PKL IV++++VG D +D+ + ++G+ VTNT
Sbjct: 37 EILLKKVKEVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNT 96
Query: 97 PDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKF------TGKTVGII 150
PDVLTD ADLA L+LA R + + DR+VRSG+WKK K+ GKT+GII
Sbjct: 97 PDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGII 156
Query: 151 GLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTE 207
GLGRIG A+AKRA+ F+ I YYSRT K ++ + + + +L +V+A PLT
Sbjct: 157 GLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTR 216
Query: 208 ETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE 267
ET H+IN E + + +LINI RG VD LV AL EG + GAGLDVFE EP+ EE
Sbjct: 217 ETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEE 276
Query: 268 LFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 301
LF L+NVVL PH+GS + R+ MA+LV NL A
Sbjct: 277 LFKLDNVVLTPHIGSASFGAREGMAELVAKNLIA 310
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 185 bits (469), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 123/272 (45%), Positives = 168/272 (61%), Gaps = 9/272 (3%)
Query: 37 QFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNT 96
+ L + + A+V + D E+ + PKL IV++++VG D +D+ + ++G+ VTNT
Sbjct: 37 EILLKKVKEVDALVTXLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNT 96
Query: 97 PDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKF------TGKTVGII 150
PDVLTD ADLA L+LA R + + DR+VRSG+WKK K+ GKT+GII
Sbjct: 97 PDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGII 156
Query: 151 GLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTE 207
GLGRIG A+AKRA+ F+ I YYSRT K ++ + + + +L +V+A PLT
Sbjct: 157 GLGRIGQAIAKRAKGFNXRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTR 216
Query: 208 ETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE 267
ET H+IN E + +LINI RG VD LV AL EG + GAGLDVFE EP+ EE
Sbjct: 217 ETYHLINEERLKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEE 276
Query: 268 LFGLENVVLMPHVGSGTVETRKTMADLVLGNL 299
LF L+NVVL PH+GS + R+ A+LV NL
Sbjct: 277 LFKLDNVVLTPHIGSASFGAREGXAELVAKNL 308
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/259 (38%), Positives = 145/259 (55%), Gaps = 8/259 (3%)
Query: 58 DAELIDAL-PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVL 116
D ++DA L+++S+ SVG+D + + + K++G+RV TPDVLTD A+LA+ L+L
Sbjct: 66 DKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 125
Query: 117 RRLCESDRYVRSGKWK--KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYY 173
RRL E+ V++G W K + T TVGIIGLGRIG A+A+R + F Y
Sbjct: 126 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 185
Query: 174 SRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINI 230
R +P ++ + S ELA+ +VVAC LT T + N++ + V INI
Sbjct: 186 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 245
Query: 231 GRGPHVDERELVSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRK 289
RG V++ +L AL G++ AGLDV EP L L+N V++PH+GS T TR
Sbjct: 246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 305
Query: 290 TMADLVLGNLEAHFLNKPL 308
TM+ L NL A +P+
Sbjct: 306 TMSLLAANNLLAGLRGEPM 324
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 155/293 (52%), Gaps = 7/293 (2%)
Query: 16 LEQELERRFNL-FKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL-PKLEIVSS 73
+E EL +RF+L + ++ + + AT AE+I L P L+ +++
Sbjct: 41 IEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIAT 100
Query: 74 FSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKK 133
SVG D +D + G++V +TPDVL+D A++A L+L RR E+DR VRSG W
Sbjct: 101 LSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXVRSGSWPG 160
Query: 134 -GDYKLT-TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK---YYPS 188
G +L TG+ +GI G GRIG A+A RA F I+Y++RT + + Y+ +
Sbjct: 161 WGPTQLLGXGLTGRRLGIFGXGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDT 220
Query: 189 VVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEG 248
+ L I ++A P E + ++ + I + V+INI RG +++ L+ AL
Sbjct: 221 LDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSK 280
Query: 249 RLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA 301
L AGLDVF NEP + L+N+ L PH+GS T ETR L++ +EA
Sbjct: 281 HLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAXGWLLIQGIEA 333
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 160 bits (404), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/258 (38%), Positives = 142/258 (55%), Gaps = 8/258 (3%)
Query: 58 DAELIDAL-PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVL 116
D ++DA L+++S+ SVG+D + + + K++G+RV TPDVLTD A+LA+ L+L
Sbjct: 64 DKRILDAAGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 123
Query: 117 RRLCESDRYVRSGKWK--KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYY 173
RRL E+ V++G W K + T TVGIIGLGRIG A+A+R + F Y
Sbjct: 124 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 183
Query: 174 SRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINI 230
R +P ++ + S ELA+ +VVAC LT T + N++ V INI
Sbjct: 184 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKXKETAVFINI 243
Query: 231 GRGPHVDERELVSALVEGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRK 289
RG V++ +L AL G++ AGLDV EP L L+N V++PH+GS T TR
Sbjct: 244 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 303
Query: 290 TMADLVLGNLEAHFLNKP 307
T + L NL A +P
Sbjct: 304 TXSLLAANNLLAGLRGEP 321
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 136/241 (56%), Gaps = 8/241 (3%)
Query: 60 ELIDALPK-LEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRR 118
E+ID +P+ ++ +S++S+G D +D+ CK +G++V N P +T A++A+ L+L RR
Sbjct: 59 EVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARR 118
Query: 119 LCESDRYVRSGKWKKGD--YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY--- 173
E ++ +R+ W + + K KT+GI G G IG A+AKRA+ F I+Y+
Sbjct: 119 AGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTH 178
Query: 174 --SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
S +++ + + ++ S+ L S + P T ETR+ N+ I +L +++N
Sbjct: 179 RASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTA 238
Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTM 291
RG VD +V+AL GRL AG DVF EP++ E + L N L PH+GS + R+ M
Sbjct: 239 RGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDM 298
Query: 292 A 292
A
Sbjct: 299 A 299
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 154 bits (388), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 88/270 (32%), Positives = 148/270 (54%), Gaps = 10/270 (3%)
Query: 39 LKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPD 98
LK ++ + T E+++ +L+++S S G D +D+ + ++G+ VT
Sbjct: 36 LKGVIGRFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSG 95
Query: 99 VLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG-----DYKLTTKFTGKTVGIIGLG 153
+L++ VA+ +GL++ ++R++ +D+++R G+W+ +K GK VGI+G+G
Sbjct: 96 LLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMG 155
Query: 154 RIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETR 210
IG A+A+R F + Y+SR K N++ + Y + EL I+++A PLT +T
Sbjct: 156 AIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTY 215
Query: 211 HIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFG 270
HIIN E + L K L+NIGRG VDE+ + A+ +G+L G DVFE EP ELF
Sbjct: 216 HIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFK 274
Query: 271 LE-NVVLMPHVGSGTVETRKTMADLVLGNL 299
E VL PH +E ++ + + NL
Sbjct: 275 YEWETVLTPHYAGLALEAQEDVGFRAVENL 304
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 111/259 (42%), Positives = 156/259 (60%), Gaps = 6/259 (2%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
DAE++D L++++ +SVG+D VD+ +E+G+RVT+TP VLT+ ADL + L+LAV R
Sbjct: 56 DAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVAR 115
Query: 118 RLCESDRYVRSGKWK--KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSR 175
R+ E Y R G WK + L G T+G++G+GRIG AVAKRA AF + Y++R
Sbjct: 116 RVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHAR 175
Query: 176 TEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH 235
T KP L Y + S+ EL ++ + PLT ET ++NRE + A+ +L+N RG
Sbjct: 176 TPKP-LPYPFL-SLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGAL 233
Query: 236 VDERELVSALVEGRLGGAGLDVFENEPHVP-EELFGLENVVLMPHVGSGTVETRKTMADL 294
VD LV AL G L GAGLDV + EP P L+ L N V+ PH+GS TR+ MA++
Sbjct: 234 VDTEALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEV 292
Query: 295 VLGNLEAHFLNKPLLTPVV 313
+ NL A + PVV
Sbjct: 293 AVENLLAVLEGREPPNPVV 311
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 150 bits (379), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 163/294 (55%), Gaps = 8/294 (2%)
Query: 1 MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAE 60
M+ + VL+A P++ Q L+ + D+ + ++ ++ + A++ +
Sbjct: 1 MKRMKVLVAAPLHEKAIQVLKDAGLEVIYEEYPDEDRLVELVKD-VEAIIVRSKPKVTRR 59
Query: 61 LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
+I++ PKL++++ VGLD +D+ KEKG+ V N P + VA+LA+GLM +V R++
Sbjct: 60 VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIA 119
Query: 121 ESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPI---NYYSRTE 177
+DR +R G W K + + + GKT+GIIG GRIG VAK A A I + Y E
Sbjct: 120 FADRKMREGVWAKKEA-MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEE 178
Query: 178 KPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVD 237
+ + + L ++ + PL E T H+IN E + + +LIN RGP VD
Sbjct: 179 RAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVD 238
Query: 238 ERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVGSGTVETRK 289
LV AL EG + GAGLDVFE EP +P++ L +NVVL PH+G+ TVE ++
Sbjct: 239 TNALVKALKEGWIAGAGLDVFEEEP-LPKDHPLTKFDNVVLTPHIGASTVEAQE 291
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 134/258 (51%), Gaps = 5/258 (1%)
Query: 34 DKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRV 93
D+ + L A +V +AT DAE++ A PKL+IV+ VGLD VD+ +GV V
Sbjct: 34 DRDKLLAAVPEADALLVRSATT-VDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLV 92
Query: 94 TNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLG 153
N P A+ A+ L+LA R++ +D +R WK+ + T F GKTVG++GLG
Sbjct: 93 VNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIF-GKTVGVVGLG 151
Query: 154 RIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETR 210
RIG VA+R AF + Y P + S+ +L + + V P T ET
Sbjct: 152 RIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETA 211
Query: 211 HIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFG 270
+I++E + P +++N RG VDE L A+ G + AGLDVF EP LF
Sbjct: 212 GLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFE 271
Query: 271 LENVVLMPHVGSGTVETR 288
L VV+ PH+G+ T E +
Sbjct: 272 LAQVVVTPHLGASTAEAQ 289
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 134/258 (51%), Gaps = 5/258 (1%)
Query: 34 DKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRV 93
D+ + L A +V +AT DAE++ A PKL+IV+ VGLD VD+ +GV V
Sbjct: 33 DRDKLLAAVPEADALLVRSATT-VDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLV 91
Query: 94 TNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLG 153
N P A+ A+ L+LA R++ +D +R WK+ + T F GKTVG++GLG
Sbjct: 92 VNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIF-GKTVGVVGLG 150
Query: 154 RIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETR 210
RIG VA+R AF + Y P + S+ +L + + V P T ET
Sbjct: 151 RIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETA 210
Query: 211 HIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFG 270
+I++E + P +++N RG VDE L A+ G + AGLDVF EP LF
Sbjct: 211 GLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFE 270
Query: 271 LENVVLMPHVGSGTVETR 288
L VV+ PH+G+ T E +
Sbjct: 271 LAQVVVTPHLGASTAEAQ 288
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 13/244 (5%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
DA+ + A P+L ++ G D D+ C +GV +T PD+LT A+LAIGL + + R
Sbjct: 58 DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 118 RLCESDRYVRSGKWKKGDYKLT-TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSR- 175
L +D +VRSG+++ + T TVG +G+G IG+A+A R + + + Y++R
Sbjct: 118 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARK 177
Query: 176 ---TEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232
T+ + EL ++ +++A PL +T H++N E++ + P +L+N R
Sbjct: 178 ALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCR 237
Query: 233 GPHVDERELVSALVEGRLGGAGLDVFENE--------PHVPEELFGLENVVLMPHVGSGT 284
G VDE +++AL G+LGG DVFE E + L N + PH+GS
Sbjct: 238 GSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAV 297
Query: 285 VETR 288
R
Sbjct: 298 RAVR 301
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 127/244 (52%), Gaps = 13/244 (5%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
DA+ + A P+L ++ G D D+ C +GV +T PD+LT A+LAIGL + + R
Sbjct: 58 DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 118 RLCESDRYVRSGKWKKGDYKLT-TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSR- 175
L +D +VRSG+++ + T TVG +G+G IG+A+A R + + + Y++R
Sbjct: 118 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHARK 177
Query: 176 ---TEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232
T+ + EL ++ +++A PL +T H++N E++ + P +L+N R
Sbjct: 178 ALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCR 237
Query: 233 GPHVDERELVSALVEGRLGGAGLDVFENE--------PHVPEELFGLENVVLMPHVGSGT 284
G VDE +++AL G+LGG DVFE E + L N + PH+GS
Sbjct: 238 GSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAV 297
Query: 285 VETR 288
R
Sbjct: 298 RAVR 301
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 130/246 (52%), Gaps = 17/246 (6%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
DA+ + A P+L ++ G D D+ C +GV +T PD+LT A+LAIGL + + R
Sbjct: 58 DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 118 RLCESDRYVRSGKWKKGDYKLT-TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY--- 173
L +D +VRSGK++ + T TVG +G+G IG+A+A R + + + Y+
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAK 177
Query: 174 ---SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINI 230
++TE+ L + + EL ++ +++A PL +T H++N E++ + P +L+N
Sbjct: 178 ALDTQTEQ-RLGLRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNP 235
Query: 231 GRGPHVDERELVSALVEGRLGGAGLDVFENE--------PHVPEELFGLENVVLMPHVGS 282
RG VDE +++AL G+LGG DVFE E + L N + PH+GS
Sbjct: 236 CRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGS 295
Query: 283 GTVETR 288
R
Sbjct: 296 AVRAVR 301
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 132 bits (331), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 130/246 (52%), Gaps = 17/246 (6%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
DA+ + A P+L ++ G D D+ C +GV +T PD+LT A+LAIGL + + R
Sbjct: 58 DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 117
Query: 118 RLCESDRYVRSGKWKKGDYKLT-TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY--- 173
L +D +VRSGK++ + T TVG +G+G IG+A+A R + + + Y+
Sbjct: 118 HLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAK 177
Query: 174 ---SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINI 230
++TE+ L + + EL ++ +++A PL +T H++N E++ + P +L+N
Sbjct: 178 ALDTQTEQ-RLGLRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNP 235
Query: 231 GRGPHVDERELVSALVEGRLGGAGLDVFENE--------PHVPEELFGLENVVLMPHVGS 282
RG VDE +++AL G+LGG DVFE E + L N + PH+GS
Sbjct: 236 CRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGS 295
Query: 283 GTVETR 288
R
Sbjct: 296 AVRAVR 301
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 128/246 (52%), Gaps = 17/246 (6%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
DA+ + A P+L ++ G D D+ C +GV +T PD+LT A+LAIGL + + R
Sbjct: 59 DADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGR 118
Query: 118 RLCESDRYVRSGKWKKGDYKLT-TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY--- 173
L +D +VRSG+++ + T TVG +G G IG+A A R + + + Y+
Sbjct: 119 HLRAADAFVRSGQFRGWQPRFYGTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYHAAK 178
Query: 174 ---SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINI 230
++TE+ L + + EL ++ +++A PL +T H++N E++ + P +L+N
Sbjct: 179 ALDTQTEQ-RLGLRQV-ACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNP 236
Query: 231 GRGPHVDERELVSALVEGRLGGAGLDVFENE--------PHVPEELFGLENVVLMPHVGS 282
RG VDE +++AL G+LGG DVFE E + L N + PH+GS
Sbjct: 237 CRGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGS 296
Query: 283 GTVETR 288
R
Sbjct: 297 AVRAVR 302
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 131/254 (51%), Gaps = 6/254 (2%)
Query: 39 LKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPD 98
L A+ + ++ + A++I+A KL++V G+D VD+ KG+ V NTP+
Sbjct: 61 LIAELQDCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN 120
Query: 99 VLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMA 158
+ A+L G+++ + R++ ++ ++ GKW++ + + T+ GKT+GI+GLGRIG
Sbjct: 121 GNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKF-MGTELNGKTLGILGLGRIGRE 179
Query: 159 VAKRAEAFSCPINYYSRTEKPNLKYKYYPSVV---ELASNCHILVVACPLTEETRHIINR 215
VA R ++F Y P + + + E+ C + V PL T ++N
Sbjct: 180 VATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLND 239
Query: 216 EVIDALGPKGV-LINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENV 274
A KGV ++N RG VDE L+ AL G+ GA LDVF EP L ENV
Sbjct: 240 NTF-AQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENV 298
Query: 275 VLMPHVGSGTVETR 288
+ PH+G+ T E +
Sbjct: 299 ISCPHLGASTKEAQ 312
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 121/238 (50%), Gaps = 11/238 (4%)
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
E+ A +L V FSVG ++V++ +++G+ V N P T VA+L IG ++ ++RR+
Sbjct: 73 EIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRI 132
Query: 120 CESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP 179
+G W+K + + GKT+GI+G G IG V AE+ + YY ++K
Sbjct: 133 FPRSVSAHAGGWEKTAIG-SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDK- 190
Query: 180 NLKY---KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV 236
L+Y K S+ EL ++ + P ++ T +I + + LIN RG V
Sbjct: 191 -LQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDV 249
Query: 237 DERELVSALVEGRLGGAGLDVFENEPHVPEELF-----GLENVVLMPHVGSGTVETRK 289
D L L EG L GA +DVF EP E F GLENV+L PH+G T E ++
Sbjct: 250 DLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQE 307
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 134/270 (49%), Gaps = 16/270 (5%)
Query: 58 DAELIDALPK-LEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVL 116
+A+LI LP L++ ++ G D +D+ E+GV N+ +DLA+ L+L+V
Sbjct: 70 NADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVF 129
Query: 117 RRLCESDRYVRSGKWKKGDY------KLTTKFTGKTVGIIGLGRIGMAVAKRA-EAFSCP 169
R S+R R+G + + K G +G +GLG I +A++A
Sbjct: 130 RLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 170 INYY------SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGP 223
+ YY + TEK L + S+ ELA + V+ P + T H+I+ A+ P
Sbjct: 190 LVYYDVAPADAETEKA-LGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKP 248
Query: 224 KGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSG 283
++N RGP + + L++AL G+L AGLDV E EP V +EL +++V L H+G
Sbjct: 249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGV 308
Query: 284 TVETRKTMADLVLGNLEAHFLN-KPLLTPV 312
+ET L + N++ L KPLLTP
Sbjct: 309 AIETFHEFERLTMTNIDRFLLQGKPLLTPA 338
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/270 (31%), Positives = 135/270 (50%), Gaps = 16/270 (5%)
Query: 58 DAELIDALPK-LEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVL 116
+A+LI LP L++ ++ G D +D+ E+GV N+ +DLA+ L+L+V
Sbjct: 70 NADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVF 129
Query: 117 RRLCESDRYVRSGKWKKGDY------KLTTKFTGKTVGIIGLGRIGMAVAKRA-EAFSCP 169
R S+R R+G + + K G +G +GLG I +A++A
Sbjct: 130 RLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 170 INYY------SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGP 223
+ YY + TEK L + S+ ELA + V+ P + T H+I+ A+ P
Sbjct: 190 LVYYDVAPADAETEKA-LGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKP 248
Query: 224 KGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSG 283
++N RGP + + L++AL G+L AGLDV E EP+V +EL +++V L H+G
Sbjct: 249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHIGGV 308
Query: 284 TVETRKTMADLVLGNLEAHFLN-KPLLTPV 312
+ET L + N++ L KPLLTP
Sbjct: 309 AIETFHEFERLTMTNIDRFLLQGKPLLTPA 338
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 134/270 (49%), Gaps = 16/270 (5%)
Query: 58 DAELIDALPK-LEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVL 116
+A++I LP L++ ++ G D +D+ E+GV N+ +DLA+ L+L+V
Sbjct: 70 NADIISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVF 129
Query: 117 RRLCESDRYVRSGKWKKGDY------KLTTKFTGKTVGIIGLGRIGMAVAKRA-EAFSCP 169
R S+R R+G + + K G +G +GLG I +A++A
Sbjct: 130 RLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMK 189
Query: 170 INYY------SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGP 223
+ YY + TEK L + S+ ELA + V+ P + T H+I+ A+ P
Sbjct: 190 LVYYDVAPADAETEKA-LGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKP 248
Query: 224 KGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSG 283
++N RGP + + L++AL G+L AGLDV E EP V +EL +++V L H+G
Sbjct: 249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGV 308
Query: 284 TVETRKTMADLVLGNLEAHFLN-KPLLTPV 312
+ET L + N++ L KPLLTP
Sbjct: 309 AIETFHEFERLTMTNIDRFLLQGKPLLTPA 338
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 88/268 (32%), Positives = 130/268 (48%), Gaps = 28/268 (10%)
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
EL+ P+L+++ + SVG D +D+ CK+KG+ VT+ P + VA+ +L +++RL
Sbjct: 57 ELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRL 116
Query: 120 CESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP 179
+ V+ + + L + T+G+IG GRIG VA AF + Y ++
Sbjct: 117 KRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYDVVKRE 176
Query: 180 NLKYK--YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGV-LINIGRGPHV 236
+LK K Y S+ EL ++ + P T+ET H IN E I +L GV LIN RG V
Sbjct: 177 DLKEKGCVYTSLDELLKESDVISLHVPYTKETHHXINEERI-SLXKDGVYLINTARGKVV 235
Query: 237 DERELVSALVEGRLGGAGLDVFENE-----PHVPE-----------ELFGLENVVLMPHV 280
D L A G+ G GLDVFE+E E EL +NV++ PH+
Sbjct: 236 DTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHI 295
Query: 281 GSGT--------VETRKTMADLVLGNLE 300
T ET K + V G+LE
Sbjct: 296 AYYTDKSLERIREETVKVVKAFVKGDLE 323
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 128/249 (51%), Gaps = 15/249 (6%)
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
++I+ KL+I++ +GLD +D + +++ ++V P TD +L IGLM+A R++
Sbjct: 61 DVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKM 120
Query: 120 CESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYS----- 174
S +SG +KK + + GKT+GI+G GRIG V A A + Y
Sbjct: 121 YTSMALAKSGIFKKIE---GLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIR 177
Query: 175 -RTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG 233
+ EK N K S+ EL N ++ + ++++ + II+ + + +++N R
Sbjct: 178 EKAEKINAK---AVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRA 234
Query: 234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPE---ELFGLENVVLMPHVGSGTVETRKT 290
V+ + L+ + +G++ DVF NEP E EL E V++ H+G+ T E +K
Sbjct: 235 VAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR 294
Query: 291 MADLVLGNL 299
+A++ NL
Sbjct: 295 VAEMTTQNL 303
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 127/262 (48%), Gaps = 13/262 (4%)
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
++I+A KL + +F++G ++VD+ ++G+ V N P T VA+L IG +L +LR +
Sbjct: 68 DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 127
Query: 120 CESDRYVRSGKWKK---GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
E++ G W K G ++ GK +GIIG G IG + AE+ + +Y
Sbjct: 128 PEANAKAHRGVWNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE 183
Query: 177 EK-PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH 235
K P + +L + ++ + P T++++ + I + P +LIN RG
Sbjct: 184 NKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTV 243
Query: 236 VDERELVSALVEGRLGGAGLDVFENEPHVPEELFG-----LENVVLMPHVGSGTVETRKT 290
VD L AL L GA +DVF EP + F +NV+L PH+G T E ++
Sbjct: 244 VDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQEN 303
Query: 291 MADLVLGNLEAHFLNKPLLTPV 312
+ V G L + N L+ V
Sbjct: 304 IGLEVAGKLIKYSDNGSTLSAV 325
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 105 bits (261), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 127/262 (48%), Gaps = 13/262 (4%)
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
++I+A KL + +F++G ++VD+ ++G+ V N P T VA+L IG +L +LR +
Sbjct: 68 DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 127
Query: 120 CESDRYVRSGKWKK---GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
E++ G W K G ++ GK +GIIG G IG + AE+ + +Y
Sbjct: 128 PEANAKAHRGVWNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE 183
Query: 177 EK-PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH 235
K P + +L + ++ + P T++++ + I + P +LIN RG
Sbjct: 184 NKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTV 243
Query: 236 VDERELVSALVEGRLGGAGLDVFENEPHVPEELFG-----LENVVLMPHVGSGTVETRKT 290
VD L AL L GA +DVF EP + F +NV+L PH+G T E ++
Sbjct: 244 VDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQEN 303
Query: 291 MADLVLGNLEAHFLNKPLLTPV 312
+ V G L + N L+ V
Sbjct: 304 IGLEVAGKLIKYSDNGSTLSAV 325
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 117/249 (46%), Gaps = 16/249 (6%)
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
E ++ L I+ G D +D+ + G+ V N P ++ AD + +L + RR
Sbjct: 78 EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRA 137
Query: 120 CESDRYVRSGKWKKGDYKL------TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY 173
+ +R G + ++ + G+T+GIIGLGR+G AVA RA+AF + +Y
Sbjct: 138 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 197
Query: 174 ----SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLIN 229
S + L + ++ +L + + + C L E H+IN + + L+N
Sbjct: 198 DPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 257
Query: 230 IGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVG----SG 283
RG VDE+ L AL EGR+ GA LDV E+EP + L N++ PH
Sbjct: 258 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQA 317
Query: 284 TVETRKTMA 292
++E R+ A
Sbjct: 318 SIEMREEAA 326
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 116/250 (46%), Gaps = 22/250 (8%)
Query: 75 SVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG 134
+VG D +DM K+ G+R++N P +A+ A+ L +LR + + +++G ++K
Sbjct: 76 NVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKA 135
Query: 135 DYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYS----RTEKPNLKYKYYPSVV 190
+ + +TVG++G G IG K + F + Y + + P+ Y S+
Sbjct: 136 GTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYV---SLE 192
Query: 191 ELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRL 250
+L ++ + P E+ HIIN + + P ++IN R +D + ++S L G+L
Sbjct: 193 DLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKL 252
Query: 251 GGAGLDVFENEPH--------------VPEELFGLENVVLMPHVGSGTVETRKTMADLVL 296
G G+D +E E + +EL G+ NVVL PH+ T M L
Sbjct: 253 AGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSL 312
Query: 297 GNLEAHFLNK 306
+L FL K
Sbjct: 313 QHL-VDFLTK 321
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 103 bits (258), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 117/249 (46%), Gaps = 16/249 (6%)
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
E ++ L I+ G D +D+ + G+ V N P ++ AD + +L + RR
Sbjct: 81 EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 120 CESDRYVRSGKWKKGDYKL------TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY 173
+ +R G + ++ + G+T+GIIGLGR+G AVA RA+AF + +Y
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 200
Query: 174 ----SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLIN 229
S + L + ++ +L + + + C L E H+IN + + L+N
Sbjct: 201 DPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 260
Query: 230 IGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVG----SG 283
RG VDE+ L AL EGR+ GA LDV E+EP + L N++ PH
Sbjct: 261 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQA 320
Query: 284 TVETRKTMA 292
++E R+ A
Sbjct: 321 SIEMREEAA 329
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 117/249 (46%), Gaps = 16/249 (6%)
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
E ++ L I+ G D +D+ + G+ V N P ++ AD + +L + RR
Sbjct: 81 EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 120 CESDRYVRSGKWKKGDYKL------TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY 173
+ +R G + ++ + G+T+GIIGLGR+G AVA RA+AF + +Y
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 200
Query: 174 ----SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLIN 229
S + L + ++ +L + + + C L E H+IN + + L+N
Sbjct: 201 DPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 260
Query: 230 IGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVG----SG 283
RG VDE+ L AL EGR+ GA LDV E+EP + L N++ PH
Sbjct: 261 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQA 320
Query: 284 TVETRKTMA 292
++E R+ A
Sbjct: 321 SIEMREEAA 329
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 125/262 (47%), Gaps = 13/262 (4%)
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
++I+A KL + F +G ++VD+ ++G+ V N P T VA+L IG +L +LR +
Sbjct: 67 DVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 126
Query: 120 CESDRYVRSGKWKK---GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
E++ G W K G ++ GK +GIIG G IG + AE+ + +Y
Sbjct: 127 PEANAKAHRGVWNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE 182
Query: 177 EK-PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH 235
K P + +L + ++ + P T++++ + I + P +LIN RG
Sbjct: 183 NKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTV 242
Query: 236 VDERELVSALVEGRLGGAGLDVFENEPHVPEELFG-----LENVVLMPHVGSGTVETRKT 290
VD L AL L GA +DVF EP + F +NV+L PH+G T E ++
Sbjct: 243 VDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQEN 302
Query: 291 MADLVLGNLEAHFLNKPLLTPV 312
+ V G L + N L+ V
Sbjct: 303 IGLEVAGKLIKYSDNGSTLSAV 324
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 116/249 (46%), Gaps = 16/249 (6%)
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
E ++ L I+ G D +D+ + G+ V N P ++ AD + +L + RR
Sbjct: 81 EDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRT 140
Query: 120 CESDRYVRSGKWKKGDYKL------TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY 173
+ +R G + ++ + G+T+GIIGL R+G AVA RA+AF + +Y
Sbjct: 141 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVLFY 200
Query: 174 ----SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLIN 229
S + L + ++ +L + + + C L E H+IN + + L+N
Sbjct: 201 DPYLSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 260
Query: 230 IGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVG----SG 283
RG VDE+ L AL EGR+ GA LDV E+EP + L N++ PH
Sbjct: 261 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQA 320
Query: 284 TVETRKTMA 292
++E R+ A
Sbjct: 321 SIEMREEAA 329
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 114/249 (45%), Gaps = 16/249 (6%)
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
E ++ L ++ G D VD+ E G+ V N P ++ AD I +L + RR
Sbjct: 62 EDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRN 121
Query: 120 CESDRYVRSGKWKKGDYKL------TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY 173
+ +R G + ++ + G+T+G+IG GR G AVA RA+AF + +Y
Sbjct: 122 TWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFY 181
Query: 174 SRTEKP----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLIN 229
+ +L + ++ +L + + C L E H+IN I + L+N
Sbjct: 182 DPYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVN 241
Query: 230 IGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVG----SG 283
RG VDE+ L AL EGR+ GA LDV E+EP + L N++ PH
Sbjct: 242 AARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQA 301
Query: 284 TVETRKTMA 292
++E R+ A
Sbjct: 302 SLEMREAAA 310
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 13/262 (4%)
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
++I+A KL + F +G ++VD+ ++G+ V N P T VA+L IG +L +LR +
Sbjct: 68 DVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 127
Query: 120 CESDRYVRSGKWKK---GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
E++ G W K G ++ GK +GIIG G IG + AE+ + +Y
Sbjct: 128 PEANAKAHRGVWNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIE 183
Query: 177 EK-PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH 235
K P + +L + ++ + P T++ + I P +LIN RG
Sbjct: 184 NKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTV 243
Query: 236 VDERELVSALVEGRLGGAGLDVFENEPHVPEELFG-----LENVVLMPHVGSGTVETRKT 290
VD L AL L GA +DVF EP + F +NV+L PH+G T E ++
Sbjct: 244 VDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQEN 303
Query: 291 MADLVLGNLEAHFLNKPLLTPV 312
+ V G L + N L+ V
Sbjct: 304 IGLEVAGKLIKYSDNGSTLSAV 325
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/290 (26%), Positives = 135/290 (46%), Gaps = 14/290 (4%)
Query: 18 QELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALP--KLEIVSSFS 75
++L++ + WT D A + I + GN + I A P +L+ V S
Sbjct: 13 EQLQQLQTTYPDWTFKDAAAVTAADYDQIEVMYGNHPL---LKTILARPTNQLKFVQVIS 69
Query: 76 VGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGK-WKKG 134
G+D + + + GV V NT + D +++ + ML+V+R + R + W
Sbjct: 70 AGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALP 129
Query: 135 DYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK---YYPSVVE 191
T+ TG+ + I G G+IG ++A +A A + + T P + + + +
Sbjct: 130 --MTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATAD 187
Query: 192 LASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG 251
+ + +V A PLT T H+ + E+ + +LINIGRGP VD L++AL +L
Sbjct: 188 ALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLS 247
Query: 252 GAGLDVFENEPHVPEE--LFGLENVVLMPHVGSGTVETRKTMADLVLGNL 299
A LDV E EP +P + L+ ++V++ PH+ R T+ + N
Sbjct: 248 MAALDVTEPEP-LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANF 296
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 111/240 (46%), Gaps = 19/240 (7%)
Query: 60 ELIDALPKLEIVSSFS-VGLD---KVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAV 115
+L+D LPKL+I+S V D +D+ C +KGV V A+L L++A
Sbjct: 64 QLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGSPVAP-AELTWALVMAA 122
Query: 116 LRRLCESDRYVRSGKWKKGDYKLTTK---------FTGKTVGIIGLGRIGMAVAKRAEAF 166
RR+ + ++ G W++ K TT G+T+GI G G+IG VA AF
Sbjct: 123 QRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAF 182
Query: 167 SCPINYYSRTEKPNLKYKYYPSVVE----LASNCHILVVACPLTEETRHIINREVIDALG 222
+ + R +V E L +L V L +ETR II + +
Sbjct: 183 GMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMK 242
Query: 223 PKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVP-EELFGLENVVLMPHVG 281
P + +N R V+E +V+AL GR G A +DVFE EP + L +EN + PH+G
Sbjct: 243 PTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIG 302
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 114/257 (44%), Gaps = 7/257 (2%)
Query: 59 AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRR 118
AE I PKL++ + +G D VD+ + + V ++ VA+ + ++L ++R
Sbjct: 106 AERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRN 165
Query: 119 LCESDRYVRSGKWKKGD-YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
S + R+G W D + G VG + GRIG+ V + F ++Y R
Sbjct: 166 YIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHR 225
Query: 178 KPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232
P L ++ + ++ C ++ + CPL ET H+IN E + L+N R
Sbjct: 226 LPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTAR 285
Query: 233 GPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELF-GLENVVLMPHVGSGTVETRKTM 291
G D +V AL GRL G DV+ +P + + + + + PH+ ++ +
Sbjct: 286 GKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISGTSLSAQTRY 345
Query: 292 ADLVLGNLEAHFLNKPL 308
A LE +F +P+
Sbjct: 346 AAGTREILECYFEGRPI 362
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 123/262 (46%), Gaps = 13/262 (4%)
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
++I+A KL + +F++G ++VD+ ++G+ V N P T VA+L IG +L +LR +
Sbjct: 62 DVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGV 121
Query: 120 CESDRYVRSG---KWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
E++ G K G ++ GK +GIIG G IG + AE+ + +Y
Sbjct: 122 PEANAKAHRGVGNKLAAGSFEA----RGKKLGIIGYGHIGTQLGILAESLGXYVYFYDIE 177
Query: 177 EK-PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH 235
K P + +L + ++ + P T++ + I P +LIN RG
Sbjct: 178 NKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRGTV 237
Query: 236 VDERELVSALVEGRLGGAGLDVFENEPHVPEELFG-----LENVVLMPHVGSGTVETRKT 290
VD L AL L GA +DVF EP + F +NV+L PH+G T E ++
Sbjct: 238 VDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQEN 297
Query: 291 MADLVLGNLEAHFLNKPLLTPV 312
+ V G L + N L+ V
Sbjct: 298 IGLEVAGKLIKYSDNGSTLSAV 319
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 114/257 (44%), Gaps = 7/257 (2%)
Query: 59 AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRR 118
AE I PKL++ + +G D VD+ + + V ++ VA+ + ++L ++R
Sbjct: 105 AERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRN 164
Query: 119 LCESDRYVRSGKWKKGD-YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
S + R+G W D + G VG + GRIG+ V + F ++Y R
Sbjct: 165 YIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDRHR 224
Query: 178 KPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232
P L ++ + ++ C ++ + CPL ET H+IN E + L+N R
Sbjct: 225 LPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTAR 284
Query: 233 GPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELF-GLENVVLMPHVGSGTVETRKTM 291
G D +V AL GRL G DV+ +P + + + + + PH+ ++ +
Sbjct: 285 GKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISGTSLSAQTRY 344
Query: 292 ADLVLGNLEAHFLNKPL 308
A LE +F +P+
Sbjct: 345 AAGTREILECYFEGRPI 361
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 111/218 (50%), Gaps = 10/218 (4%)
Query: 67 KLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYV 126
KL S G+D + +C+ + ++TN + +++ G +L+++R+L
Sbjct: 67 KLSWFQSTYAGVDVLLDARCR-RDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQ 125
Query: 127 RSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT--EKPNLKYK 184
+ W+ Y+ G+T+ I+G G IG +A + F + SR+ E+
Sbjct: 126 KQRLWQSHPYQ---GLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQV 182
Query: 185 YY-PSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVS 243
Y P++ ++ + ++V P T ET H+ + P +L N+GRG ++E +L++
Sbjct: 183 YQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLT 242
Query: 244 ALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPH 279
AL G+LG A LDVFE EP +P + L+G N+++ PH
Sbjct: 243 ALRTGKLGMAVLDVFEQEP-LPADSPLWGQPNLIITPH 279
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 121/253 (47%), Gaps = 9/253 (3%)
Query: 59 AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRR 118
AE I L+++ + +G D +D+ G+ V VA+ + +L ++R
Sbjct: 78 AERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRN 137
Query: 119 LCESDRYVRSGKWK-KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
V G+W G GKT+G +G GRIG + +R + F C + Y+ R +
Sbjct: 138 FVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQ 197
Query: 178 -KPNLK----YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI-NIG 231
P L+ K+ + E+ C ++V+ PLTE+TR + N+E+I L KGVLI N
Sbjct: 198 MAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKL-KKGVLIVNNA 256
Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFG-LENVVLMPHVGSGTVETRKT 290
RG ++ + +V A+ G +GG DV++ +P + + + N + PH T++ +
Sbjct: 257 RGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLR 316
Query: 291 MADLVLGNLEAHF 303
A LE +F
Sbjct: 317 YAAGTKDMLERYF 329
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 121/253 (47%), Gaps = 9/253 (3%)
Query: 59 AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRR 118
AE I L+++ + +G D +D+ G+ V VA+ + +L ++R
Sbjct: 84 AERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRN 143
Query: 119 LCESDRYVRSGKWK-KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
V G+W G GKT+G +G GRIG + +R + F C + Y+ R +
Sbjct: 144 FVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQ 203
Query: 178 -KPNLK----YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI-NIG 231
P L+ K+ + E+ C ++V+ PLTE+TR + N+E+I L KGVLI N
Sbjct: 204 MAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKL-KKGVLIVNNA 262
Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFG-LENVVLMPHVGSGTVETRKT 290
RG ++ + +V A+ G +GG DV++ +P + + + N + PH T++ +
Sbjct: 263 RGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLR 322
Query: 291 MADLVLGNLEAHF 303
A LE +F
Sbjct: 323 YAAGTKDMLERYF 335
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 7/256 (2%)
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
E I L++ + +G D VD+ ++ V V + VA+ + ++L+++R
Sbjct: 106 ERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY 165
Query: 120 CESDRYVRSGKWKKGD-YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK 178
S + R G W D VG + GRIG+AV +R F ++Y R
Sbjct: 166 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 225
Query: 179 PN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG 233
P L ++ + ++ C ++ + CPL ET H+IN E + ++N RG
Sbjct: 226 PESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARG 285
Query: 234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEELF-GLENVVLMPHVGSGTVETRKTMA 292
D + AL GRL G DV+ +P + + + + PH+ T+ + A
Sbjct: 286 KLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYA 345
Query: 293 DLVLGNLEAHFLNKPL 308
LE F +P+
Sbjct: 346 AGTREILECFFEGRPI 361
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 7/256 (2%)
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
E I L++ + +G D VD+ ++ V V + VA+ + ++L+++R
Sbjct: 107 ERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY 166
Query: 120 CESDRYVRSGKWKKGD-YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK 178
S + R G W D VG + GRIG+AV +R F ++Y R
Sbjct: 167 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 226
Query: 179 PN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG 233
P L ++ + ++ C ++ + CPL ET H+IN E + ++N RG
Sbjct: 227 PESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARG 286
Query: 234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEELF-GLENVVLMPHVGSGTVETRKTMA 292
D + AL GRL G DV+ +P + + + + PH+ T+ + A
Sbjct: 287 KLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYA 346
Query: 293 DLVLGNLEAHFLNKPL 308
LE F +P+
Sbjct: 347 AGTREILECFFEGRPI 362
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 108/256 (42%), Gaps = 7/256 (2%)
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
E I L++ + +G D VD+ ++ V V + VA+ + ++L+++R
Sbjct: 107 ERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNY 166
Query: 120 CESDRYVRSGKWKKGD-YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK 178
S + R G W D VG + GRIG+AV +R F ++Y R
Sbjct: 167 LPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL 226
Query: 179 PN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG 233
P L ++ + ++ C ++ + CPL ET H+IN E + ++N RG
Sbjct: 227 PESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARG 286
Query: 234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEELF-GLENVVLMPHVGSGTVETRKTMA 292
D + AL GRL G DV+ +P + + + + PH+ T+ + A
Sbjct: 287 KLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYA 346
Query: 293 DLVLGNLEAHFLNKPL 308
LE F +P+
Sbjct: 347 AGTREILEXFFEGRPI 362
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 109/253 (43%), Gaps = 23/253 (9%)
Query: 59 AELIDALPKLEI--VSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVL 116
AE + AL I +S +VG+D +DM K KE G ++TN P + +A+ A +L
Sbjct: 60 AETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARIL 119
Query: 117 RRLCESDRYV--RSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYS 174
R+ D V +W + + + VG++G G IG + E F + Y
Sbjct: 120 RQDKAMDEKVARHDLRWAP---TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYD 176
Query: 175 RTEKPNLKYK--YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232
P L+ K Y S+ +L ++ + P H+IN E I + V++N+ R
Sbjct: 177 IFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSR 236
Query: 233 GPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--------------LFGLENVVLMP 278
GP VD ++ L G++ G +DV+E E + E L NV++ P
Sbjct: 237 GPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTP 296
Query: 279 HVGSGTVETRKTM 291
H T + M
Sbjct: 297 HTAFYTTHAVRNM 309
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 91/184 (49%), Gaps = 9/184 (4%)
Query: 106 DLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEA 165
+ A+ +L RR + WK +F+ VGI G G +G VA+ +A
Sbjct: 104 EYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFS---VGIXGAGVLGAKVAESLQA 160
Query: 166 FSCPINYYSRTEKPNLKYKYYPSVVELAS---NCHILVVACPLTEETRHIINREVIDALG 222
+ P+ +SR+ K + Y EL + +L+ P T +T IIN E++D L
Sbjct: 161 WGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLP 220
Query: 223 PKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHV 280
++N+ RG HV E +L++AL G+L GA LDVF EP +P+E L+ V PH+
Sbjct: 221 DGAYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEP-LPQESPLWRHPRVAXTPHI 279
Query: 281 GSGT 284
+ T
Sbjct: 280 AAVT 283
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 9/209 (4%)
Query: 59 AELIDALPKLEI--VSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVL 116
AE + AL I +S +VG+D +DM K KE G ++TN P + +A+ A +L
Sbjct: 60 AETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARIL 119
Query: 117 RRLCESDRYV--RSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYS 174
R+ D V +W + + + VG++G G IG + E F + Y
Sbjct: 120 RQDKAMDEKVARHDLRWAP---TIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYD 176
Query: 175 RTEKPNLKYK--YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232
P L+ K Y S+ +L ++ + P H+IN E I + V++N+ R
Sbjct: 177 IFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSR 236
Query: 233 GPHVDERELVSALVEGRLGGAGLDVFENE 261
GP VD ++ L G++ G +DV+E E
Sbjct: 237 GPLVDTDAVIRGLDSGKIFGYAMDVYEGE 265
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 121/271 (44%), Gaps = 18/271 (6%)
Query: 48 AVVGNATAGADAELIDALPKLEI--VSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVA 105
AV+ A+ + +D KL + + + + G D +D KE G + P + +A
Sbjct: 48 AVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIA 107
Query: 106 DLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEA 165
+LA+ + +LR + +K + + + TVG++GLGRIG A+
Sbjct: 108 ELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHG 167
Query: 166 FSCPINYYSRTEKPNLK-YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPK 224
+ E ++ Y S+ E+ I+ + P +E ++ R+ + +
Sbjct: 168 MGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDG 227
Query: 225 GVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHV-PEELFG--LEN-------- 273
+L+N RG VD ++ A+ G+LGG G DV + E V ++L G LEN
Sbjct: 228 AILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVD 287
Query: 274 ----VVLMPHVGSGTVETRKTMADLVLGNLE 300
V++ PH+GS T E K M ++ NL+
Sbjct: 288 LYPRVLITPHLGSYTDEAVKNMVEVSYQNLK 318
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 103/235 (43%), Gaps = 21/235 (8%)
Query: 75 SVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYV--RSGKWK 132
+VG+D +DM K KE G ++TN P + +A+ A VLR+ D + R +W
Sbjct: 78 NVGVDNIDMDKAKELGFQITNVPVYSPNAIAEHAAIQAARVLRQDKRMDEKMAKRDLRWA 137
Query: 133 KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK--YYPSVV 190
+ + + VG++G G IG + E F + Y + P L+ K Y S+
Sbjct: 138 P---TIGREVRDQVVGVVGTGHIGQVFMRIMEGFGAKVIAYDIFKNPELEKKGYYVDSLD 194
Query: 191 ELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRL 250
+L ++ + P H+IN + I + V++N RG VD ++ L G++
Sbjct: 195 DLYKQADVISLHVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKI 254
Query: 251 GGAGLDVFENEPHV----------PE----ELFGLENVVLMPHVGSGTVETRKTM 291
G +D +E+E V P+ +L NV++ PH T + M
Sbjct: 255 FGFVMDTYEDEVGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTTHAVRNM 309
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 101/237 (42%), Gaps = 16/237 (6%)
Query: 76 VGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCE-SDRYVRSGKWKKG 134
VG + ++ K+ + VTN P +A++ + + +LR++ E R +
Sbjct: 79 VGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWP 138
Query: 135 DYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK-YKYYPSVVELA 193
++ + TVG+IG+G IG AVA+ A + Y P + + Y +
Sbjct: 139 SNLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEFEPFLTYTDFDTVL 198
Query: 194 SNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGA 253
I+ + PL T ++I + + + LIN RG VD L+ AL +G + GA
Sbjct: 199 KEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGA 258
Query: 254 GLDVFENE-----------PHVPEE---LFGLENVVLMPHVGSGTVETRKTMADLVL 296
GLD E +PE+ L + NVV+ PH T + + M + L
Sbjct: 259 GLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICL 315
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 118/265 (44%), Gaps = 21/265 (7%)
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVT----NTPDVLTDDVADLAIGLMLAV 115
E ID KL++V VG D +D+ + G +++ +V++ VA+ + ML +
Sbjct: 77 ERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVS--VAEHVVMTMLVL 134
Query: 116 LRRLCESDRYVRSGKWK-KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYY 173
+R + + + W+ K GKT+ IG GRIG V +R F+ + YY
Sbjct: 135 VRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYY 194
Query: 174 SRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI 228
P + + ++ EL + I+ V PL T+ +IN+E++ L+
Sbjct: 195 DYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLV 254
Query: 229 NIGRGPHVDERELVSALVEGRLGGAGLDVFENEP----HVPEEL---FGLENVVLMPHVG 281
N RG ++ +AL G+L G G DV+ +P H ++ +G N + PH
Sbjct: 255 NTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGN-AMTPHYS 313
Query: 282 SGTVETRKTMADLVLGNLEAHFLNK 306
T++ + A + LE+ F K
Sbjct: 314 GTTLDAQTRYAQGTVNILESFFTGK 338
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/265 (25%), Positives = 117/265 (44%), Gaps = 21/265 (7%)
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVT----NTPDVLTDDVADLAIGLMLAV 115
E ID KL++V VG D +D+ + G +++ +V++ VA+ + ML +
Sbjct: 78 ERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVS--VAEHVVMTMLVL 135
Query: 116 LRRLCESDRYVRSGKWK-KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYY 173
+R + + + W+ K GKT+ IG GRIG V +R F+ + YY
Sbjct: 136 VRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYY 195
Query: 174 SRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI 228
P + + ++ EL + I+ V PL T+ +IN+E++ L+
Sbjct: 196 DYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLV 255
Query: 229 NIGRGPHVDERELVSALVEGRLGGAGLDVFENEP----HVPEEL---FGLENVVLMPHVG 281
N RG ++ +AL G+L G G DV+ +P H ++ +G N + PH
Sbjct: 256 NTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGN-AMTPHYS 314
Query: 282 SGTVETRKTMADLVLGNLEAHFLNK 306
T++ + A LE+ F K
Sbjct: 315 GTTLDAQTRYAQGTKNILESFFTGK 339
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 98/230 (42%), Gaps = 12/230 (5%)
Query: 59 AELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRR 118
AE + P+L+ + + GLD + V V D VA+ A+ L+LA +R
Sbjct: 42 AEELAKXPRLKFIQVVTAGLDHLPWESIPPH-VTVAGNAGSNADAVAEFALALLLAPYKR 100
Query: 119 LCESDRYVRSGKWKKGDYKLTTKF---TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSR 175
+ + K K+GDY + G+ V ++GLG IG V K A + +SR
Sbjct: 101 IIQYGE-----KXKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSR 155
Query: 176 TEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH 235
T K +++ S+ E V A PL + TR ++ + + V +N+GR
Sbjct: 156 TPKEG-PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGRAEV 214
Query: 236 VDERELVSALVEGRLGGAGLDVF--ENEPHVPEELFGLENVVLMPHVGSG 283
+D ++ L E DV+ N+ E F L NVV P V G
Sbjct: 215 LDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGG 264
>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
pdb|3GVX|B Chain B, Crystal Structure Of Glycerate Dehydrogenase Related
Protein From Thermoplasma Acidophilum
Length = 290
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 103/217 (47%), Gaps = 6/217 (2%)
Query: 67 KLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYV 126
+ + + + S G+D +D+ E V +N + VA+ A L+LA + + E++
Sbjct: 49 RTKXIQAISAGVDHIDVNGIPENVVLCSNA-GAYSISVAEHAFALLLAHAKNILENNELX 107
Query: 127 RSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYY 186
++G +++ TT GK +GI+G G IG VA A+AF + Y+R+
Sbjct: 108 KAGIFRQSP---TTLLYGKALGILGYGGIGRRVAHLAKAFGXRVIAYTRSSVDQNVDVIS 164
Query: 187 PSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALV 246
S +L +++A PLT++TR +N ++ ++N+ R V + + + L
Sbjct: 165 ESPADLFRQSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVARADVVSKPDXIGFLK 224
Query: 247 EGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSG 283
E DV+ NEP + E L N +L PHV G
Sbjct: 225 ERSDVWYLSDVWWNEPEITET--NLRNAILSPHVAGG 259
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 42/250 (16%)
Query: 44 NNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDD 103
N+ A+ + + L+ P + V + + G D VD K+ G+ + P
Sbjct: 39 NHADALXVRSVTKVNESLLSGTP-INFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIA 97
Query: 104 VADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA 163
V + +L L E D + +T+GI+G+G +G + R
Sbjct: 98 VVEYVFSALLX----LAERDGF---------------SLRDRTIGIVGVGNVGSRLQTRL 138
Query: 164 EAFS-----CPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEE----TRHIIN 214
EA C +R ++ + + ++ EL +L PL ++ T H+ +
Sbjct: 139 EALGIRTLLCDPPRAARGDEGDFR-----TLDELVQEADVLTFHTPLYKDGPYKTLHLAD 193
Query: 215 REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENV 274
+I L P +LIN RGP VD L++ L G+ LDV+E EP + NV
Sbjct: 194 ETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDL--------NV 245
Query: 275 VLMPHVGSGT 284
L+ V GT
Sbjct: 246 ALLEAVDIGT 255
>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|B Chain B, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|C Chain C, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
pdb|4HY3|D Chain D, Crystal Structure Of A Phosphoglycerate Oxidoreductase
From Rhizobium Etli
Length = 365
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 16/185 (8%)
Query: 88 EKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGK--WKKGDYKLTTKFTGK 145
++G+ V T V + VA++ +G LA+ R + ++D + G W G
Sbjct: 118 QRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGS 177
Query: 146 TVGIIGLGRIGMAVAKRAEAFSCPINYY------SRTEKPNLKYKYYPSVVE--LASNCH 197
+GI+G G +G A+ + F I + S E+ ++ P+ +E L +
Sbjct: 178 EIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSXLEENGVE----PASLEDVLTKSDF 233
Query: 198 ILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV 257
I VVA +T E + + E + I + R VD L +A+ G + A DV
Sbjct: 234 IFVVAA-VTSENKRFLGAEAFSSXRRGAAFILLSRADVVDFDALXAAVSSGHIVAAS-DV 291
Query: 258 FENEP 262
+ EP
Sbjct: 292 YPEEP 296
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 102/265 (38%), Gaps = 39/265 (14%)
Query: 41 AQQNNIRAVVGNATAGADAELIDAL---------------PKLEIVSSFSVGLDKVDMVK 85
A Q +IR + G A A +D L + V + ++G D +D+
Sbjct: 17 ADQGSIRRLPGRAIDRAALAEVDVLLVRSVTEVSRAALAGSPVRFVGTCTIGTDHLDLDY 76
Query: 86 CKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGK 145
E G+ ++ P V D +G +LA+ VR + Y +
Sbjct: 77 FAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE--------VRGADLAERTYGVVGAGQVG 128
Query: 146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPL 205
+ L +G V C +R +P+ ++ S+ L + ++ + PL
Sbjct: 129 GRLVEVLRGLGWKV------LVCDPPRQAR--EPDGEFV---SLERLLAEADVISLHTPL 177
Query: 206 TEE----TRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENE 261
+ TRH+++ + AL P L+N RG VD + L L G LDV+E E
Sbjct: 178 NRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGE 237
Query: 262 PHVPEELFGLENVVLMPHVGSGTVE 286
P EL ++ PH+ ++E
Sbjct: 238 PQADPEL-AARCLIATPHIAGYSLE 261
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 238 ERELVSALVEGRLGGAGLDVFENEPHVP 265
+REL S LVE RL GA L +F N+ +P
Sbjct: 103 QRELQSLLVEERLAGATLLIFANKQDLP 130
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 238 ERELVSALVEGRLGGAGLDVFENEPHVPEEL 268
+REL S LVE RL GA L +F N+ +P L
Sbjct: 88 QRELQSLLVEERLAGATLLIFANKQDLPGAL 118
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 238 ERELVSALVEGRLGGAGLDVFENEPHVPEEL 268
+REL S LVE RL GA L +F N+ +P L
Sbjct: 105 QRELQSLLVEERLAGATLLIFANKQDLPGAL 135
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 238 ERELVSALVEGRLGGAGLDVFENEPHVP 265
+REL S LVE RL GA L +F N+ +P
Sbjct: 105 QRELQSLLVEERLAGATLLIFANKQDLP 132
>pdb|3B0J|A Chain A, M175e Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 39 LKAQQNNIRAVVGNATAGADA-ELIDALPKLEIVSSFSVG 77
L++ ++N+R VGN AG D E++D P ++S F G
Sbjct: 200 LQSGEDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITG 239
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 238 ERELVSALVEGRLGGAGLDVFENEPHVPEEL 268
+REL S LVE RL GA L +F N+ +P L
Sbjct: 105 QRELQSLLVEERLAGATLLIFANKQDLPGAL 135
>pdb|3B0M|A Chain A, M175k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 39 LKAQQNNIRAVVGNATAGADA-ELIDALPKLEIVSSFSVG 77
L++ ++N+R VGN AG D E++D P ++S F G
Sbjct: 200 LQSGKDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITG 239
>pdb|3B0N|A Chain A, Q448k Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 39 LKAQQNNIRAVVGNATAGADA-ELIDALPKLEIVSSFSVG 77
L++ +N+R VGN AG D E++D P ++S F G
Sbjct: 200 LQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITG 239
>pdb|3VLX|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Ligand Free Form From Tobacco Leaf
pdb|3VLY|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Partial Complex From Tobacco Leaf
pdb|3VLZ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3
Full Complex From Tobacco Leaf
pdb|3VM0|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - No2
Complex From Tobacco Leaf
pdb|3VM1|A Chain A, Assimilatory Nitrite Reductase (Nii3) - N226k Mutant -
Hco3 Complex From Tobacco Leaf
Length = 584
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 39 LKAQQNNIRAVVGNATAGADA-ELIDALPKLEIVSSFSVG 77
L++ +N+R VGN AG D E++D P ++S F G
Sbjct: 200 LQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITG 239
>pdb|3B0G|A Chain A, Assimilatory Nitrite Reductase (Nii3) From Tobbaco Leaf
pdb|3VKP|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Low X-Ray Dose
pdb|3VKQ|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With Middle X-Ray Dose
pdb|3VKR|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No2 Complex From
Tobbaco Leaf Analysed With High X-Ray Dose
pdb|3VKS|A Chain A, Assimilatory Nitrite Reductase (Nii3) - No Complex From
Tobbaco Leaf
pdb|3VKT|A Chain A, Assimilatory Nitrite Reductase (Nii3) - Nh2oh Complex From
Tobbaco Leaf
Length = 591
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 39 LKAQQNNIRAVVGNATAGADA-ELIDALPKLEIVSSFSVG 77
L++ +N+R VGN AG D E++D P ++S F G
Sbjct: 200 LQSGMDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITG 239
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 2/107 (1%)
Query: 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACP 204
+ G IGLG +G A+AK C + ++R+ P + E A+ +V +CP
Sbjct: 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRS--PEKAEELAALGAERAATPXEVVESCP 59
Query: 205 LTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG 251
+T G GVL IG G + V R+G
Sbjct: 60 VTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIG 106
>pdb|3B0L|A Chain A, M175g Mutant Of Assimilatory Nitrite Reductase (Nii3) From
Tobbaco Leaf
Length = 584
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 39 LKAQQNNIRAVVGNATAGADA-ELIDALPKLEIVSSFSVG 77
L++ +N+R VGN AG D E++D P ++S F G
Sbjct: 200 LQSGGDNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQFITG 239
>pdb|3D4O|A Chain A, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|B Chain B, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|C Chain C, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
pdb|3D4O|D Chain D, Crystal Structure Of Dipicolinate Synthase Subunit A
(Np_243269.1) From Bacillus Halodurans At 2.10 A
Resolution
Length = 293
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 140 TKFT--GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSR 175
T FT G V ++GLGR+G +VA++ A + +R
Sbjct: 149 TDFTIHGANVAVLGLGRVGXSVARKFAALGAKVKVGAR 186
>pdb|2AKJ|A Chain A, Structure Of Spinach Nitrite Reductase
Length = 608
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 39 LKAQQNNIRAVVGNATAGADA-ELIDALPKLEIVSSF 74
L++ +N+R VGN AG D E++D P ++S F
Sbjct: 217 LQSGMDNVRNPVGNPLAGIDPHEIVDTRPFTNLISQF 253
>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf
Whitefly
Length = 352
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 12/74 (16%)
Query: 144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNC--HILVV 201
G TV +IG G IG+ A+A+ + +R+ P +E+A NC + +V
Sbjct: 169 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARS----------PRRLEVAKNCGADVTLV 218
Query: 202 ACPLTEETRHIINR 215
P EE II R
Sbjct: 219 VDPAKEEESSIIER 232
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,053,267
Number of Sequences: 62578
Number of extensions: 376617
Number of successful extensions: 1282
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1105
Number of HSP's gapped (non-prelim): 90
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)