Query 021388
Match_columns 313
No_of_seqs 235 out of 1729
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:33:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021388.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021388hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15409 bifunctional glyoxyla 100.0 2E-72 4.3E-77 526.1 36.4 309 3-313 2-319 (323)
2 COG0111 SerA Phosphoglycerate 100.0 2.4E-72 5.2E-77 524.0 33.8 307 1-309 1-312 (324)
3 COG1052 LdhA Lactate dehydroge 100.0 6.5E-71 1.4E-75 513.9 34.1 310 3-313 2-322 (324)
4 PRK13243 glyoxylate reductase; 100.0 2.5E-70 5.5E-75 514.7 36.0 311 3-313 2-322 (333)
5 PRK08410 2-hydroxyacid dehydro 100.0 4.3E-70 9.2E-75 508.7 35.1 299 5-307 2-311 (311)
6 PRK11790 D-3-phosphoglycerate 100.0 1.3E-69 2.9E-74 521.8 36.7 311 1-313 8-326 (409)
7 PRK06487 glycerate dehydrogena 100.0 2.9E-69 6.3E-74 504.3 35.7 303 6-313 3-317 (317)
8 PLN02306 hydroxypyruvate reduc 100.0 3E-68 6.5E-73 507.1 36.1 311 3-313 15-354 (386)
9 PRK06932 glycerate dehydrogena 100.0 3.9E-68 8.4E-73 495.9 33.2 270 36-307 35-314 (314)
10 PLN02928 oxidoreductase family 100.0 2.7E-67 5.8E-72 496.2 36.2 305 1-311 16-343 (347)
11 PRK07574 formate dehydrogenase 100.0 2.2E-67 4.7E-72 500.2 33.8 295 17-311 61-365 (385)
12 PLN03139 formate dehydrogenase 100.0 4.3E-67 9.3E-72 497.9 34.2 295 15-309 66-370 (386)
13 TIGR01327 PGDH D-3-phosphoglyc 100.0 9.9E-67 2.1E-71 516.8 35.5 306 5-313 1-311 (525)
14 PRK13581 D-3-phosphoglycerate 100.0 2.5E-66 5.3E-71 514.1 35.5 306 4-313 1-312 (526)
15 PRK08605 D-lactate dehydrogena 100.0 1E-64 2.3E-69 476.6 33.1 312 1-313 1-332 (332)
16 PRK12480 D-lactate dehydrogena 100.0 9.1E-65 2E-69 476.0 32.6 308 4-313 2-330 (330)
17 KOG0068 D-3-phosphoglycerate d 100.0 7.2E-65 1.6E-69 459.2 26.7 304 5-312 8-319 (406)
18 PRK15469 ghrA bifunctional gly 100.0 6.2E-61 1.3E-65 446.6 31.9 292 5-313 2-307 (312)
19 PRK06436 glycerate dehydrogena 100.0 3.3E-60 7.2E-65 439.5 33.0 285 5-313 2-289 (303)
20 PRK15438 erythronate-4-phospha 100.0 3.1E-60 6.8E-65 449.4 32.5 277 4-307 1-281 (378)
21 PRK00257 erythronate-4-phospha 100.0 1.3E-59 2.9E-64 446.3 33.0 278 4-307 1-282 (381)
22 KOG0069 Glyoxylate/hydroxypyru 100.0 1.9E-59 4.1E-64 432.8 27.3 272 42-313 57-335 (336)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 2.7E-47 5.8E-52 328.9 15.2 173 109-281 1-178 (178)
24 KOG0067 Transcription factor C 100.0 4.9E-33 1.1E-37 254.9 13.6 275 27-308 55-341 (435)
25 PF00389 2-Hacid_dh: D-isomer 99.9 3.1E-23 6.8E-28 170.4 15.3 101 6-108 1-101 (133)
26 PTZ00075 Adenosylhomocysteinas 99.9 3.4E-21 7.4E-26 186.3 15.2 166 73-265 197-368 (476)
27 TIGR02853 spore_dpaA dipicolin 99.8 3.4E-20 7.4E-25 171.2 10.8 177 41-251 50-257 (287)
28 PRK08306 dipicolinate synthase 99.7 4E-15 8.7E-20 138.1 17.7 165 40-233 50-243 (296)
29 PLN02494 adenosylhomocysteinas 99.6 2.4E-15 5.1E-20 145.5 8.8 116 141-262 251-374 (477)
30 COG2084 MmsB 3-hydroxyisobutyr 99.6 5.4E-15 1.2E-19 135.3 10.0 116 145-262 1-126 (286)
31 PF03446 NAD_binding_2: NAD bi 99.6 4.2E-15 9.2E-20 126.3 7.1 111 145-257 2-118 (163)
32 PRK13403 ketol-acid reductoiso 99.5 3.3E-14 7.1E-19 131.6 8.5 89 140-230 12-105 (335)
33 TIGR00936 ahcY adenosylhomocys 99.5 4.6E-14 1E-18 135.4 9.3 115 141-260 192-312 (406)
34 TIGR01505 tartro_sem_red 2-hyd 99.4 1.4E-12 3.1E-17 120.7 9.8 109 146-256 1-116 (291)
35 PRK15461 NADH-dependent gamma- 99.4 1.8E-12 3.9E-17 120.5 10.1 111 145-257 2-119 (296)
36 PRK12490 6-phosphogluconate de 99.4 2.6E-12 5.6E-17 119.6 11.0 110 145-257 1-118 (299)
37 PRK11559 garR tartronate semia 99.4 2.3E-12 4.9E-17 119.6 10.4 118 145-262 3-127 (296)
38 PLN02350 phosphogluconate dehy 99.4 2.5E-12 5.3E-17 126.6 9.9 116 146-262 8-138 (493)
39 PRK05476 S-adenosyl-L-homocyst 99.3 2.7E-12 6E-17 123.9 9.1 152 72-243 154-312 (425)
40 PRK09599 6-phosphogluconate de 99.3 8.1E-12 1.8E-16 116.3 10.8 110 145-257 1-118 (301)
41 KOG0409 Predicted dehydrogenas 99.3 6.1E-12 1.3E-16 114.1 8.2 114 142-257 33-154 (327)
42 PF00670 AdoHcyase_NAD: S-aden 99.3 4.9E-12 1.1E-16 106.3 6.9 100 140-244 19-124 (162)
43 PRK15059 tartronate semialdehy 99.3 1.7E-11 3.6E-16 113.8 10.0 110 146-257 2-117 (292)
44 PTZ00142 6-phosphogluconate de 99.2 5E-11 1.1E-15 117.1 10.3 117 145-262 2-132 (470)
45 PLN02858 fructose-bisphosphate 99.2 4.9E-11 1.1E-15 130.1 10.9 113 143-257 3-124 (1378)
46 TIGR00872 gnd_rel 6-phosphoglu 99.2 1.5E-10 3.2E-15 107.8 10.9 109 145-257 1-117 (298)
47 PLN02858 fructose-bisphosphate 99.1 1.5E-10 3.4E-15 126.2 10.5 112 144-257 324-444 (1378)
48 TIGR01692 HIBADH 3-hydroxyisob 99.1 1.4E-10 3.1E-15 107.3 8.7 107 149-257 1-114 (288)
49 PRK05479 ketol-acid reductoiso 99.1 1.1E-10 2.5E-15 109.2 8.0 91 140-233 13-109 (330)
50 PLN02256 arogenate dehydrogena 99.1 1.1E-09 2.5E-14 102.0 13.6 105 142-247 34-143 (304)
51 TIGR00873 gnd 6-phosphoglucona 99.1 1.9E-10 4.2E-15 112.9 8.6 109 146-257 1-122 (467)
52 PLN02712 arogenate dehydrogena 99.1 2.8E-10 6E-15 116.4 9.2 109 139-248 364-477 (667)
53 cd00401 AdoHcyase S-adenosyl-L 99.1 2.3E-10 5.1E-15 110.3 7.2 99 140-243 198-302 (413)
54 PRK15182 Vi polysaccharide bio 99.1 8E-10 1.7E-14 107.6 10.5 129 145-276 7-173 (425)
55 PRK08655 prephenate dehydrogen 99.0 3.2E-09 6.9E-14 103.8 13.2 137 145-290 1-146 (437)
56 PLN02545 3-hydroxybutyryl-CoA 99.0 3.3E-09 7.1E-14 98.5 12.4 99 145-246 5-132 (295)
57 PRK07417 arogenate dehydrogena 99.0 4.7E-09 1E-13 96.7 11.1 136 145-289 1-149 (279)
58 PRK14619 NAD(P)H-dependent gly 99.0 2.7E-09 5.9E-14 99.7 9.4 82 143-234 3-85 (308)
59 PRK09260 3-hydroxybutyryl-CoA 99.0 1E-08 2.2E-13 94.9 13.2 110 145-258 2-141 (288)
60 COG1023 Gnd Predicted 6-phosph 98.9 4.4E-09 9.6E-14 92.7 9.7 111 145-258 1-119 (300)
61 PRK11064 wecC UDP-N-acetyl-D-m 98.9 1.5E-08 3.2E-13 98.5 13.8 104 145-248 4-136 (415)
62 PLN02712 arogenate dehydrogena 98.9 1.1E-08 2.3E-13 104.8 12.5 104 142-246 50-158 (667)
63 COG0287 TyrA Prephenate dehydr 98.9 1.9E-08 4.1E-13 92.5 12.7 141 144-293 3-157 (279)
64 PF07991 IlvN: Acetohydroxy ac 98.9 2.7E-09 5.8E-14 89.4 6.4 86 142-229 2-93 (165)
65 TIGR00465 ilvC ketol-acid redu 98.9 4.5E-09 9.9E-14 98.3 8.5 90 142-234 1-96 (314)
66 PRK07502 cyclohexadienyl dehyd 98.9 1.1E-08 2.3E-13 95.6 10.8 141 144-290 6-162 (307)
67 PRK06545 prephenate dehydrogen 98.9 2.4E-08 5.1E-13 95.4 13.2 137 145-290 1-157 (359)
68 COG0499 SAM1 S-adenosylhomocys 98.9 3.9E-09 8.4E-14 98.0 7.2 98 141-243 206-309 (420)
69 PLN02688 pyrroline-5-carboxyla 98.9 3E-08 6.6E-13 90.5 13.0 99 145-247 1-109 (266)
70 TIGR03026 NDP-sugDHase nucleot 98.9 3.5E-08 7.5E-13 95.9 13.8 131 145-277 1-174 (411)
71 PRK14194 bifunctional 5,10-met 98.9 8.5E-09 1.8E-13 95.3 9.0 130 139-303 154-286 (301)
72 PF03807 F420_oxidored: NADP o 98.9 2.9E-09 6.3E-14 81.9 5.1 85 146-233 1-96 (96)
73 PRK07530 3-hydroxybutyryl-CoA 98.9 2.3E-08 4.9E-13 92.7 11.7 136 145-294 5-171 (292)
74 PRK07066 3-hydroxybutyryl-CoA 98.8 5.1E-08 1.1E-12 91.5 13.6 101 145-247 8-133 (321)
75 PRK08818 prephenate dehydrogen 98.8 1.1E-07 2.4E-12 90.7 16.0 121 142-279 2-130 (370)
76 PRK05225 ketol-acid reductoiso 98.8 3.2E-09 6.9E-14 102.2 5.4 96 130-228 21-128 (487)
77 PRK08293 3-hydroxybutyryl-CoA 98.8 4.5E-08 9.8E-13 90.5 12.9 138 145-294 4-172 (287)
78 PRK11199 tyrA bifunctional cho 98.8 8.4E-08 1.8E-12 92.1 15.0 121 101-244 67-188 (374)
79 PRK07531 bifunctional 3-hydrox 98.8 4.9E-08 1.1E-12 97.0 12.8 110 145-258 5-139 (495)
80 PRK07819 3-hydroxybutyryl-CoA 98.8 9.8E-08 2.1E-12 88.4 12.7 138 145-294 6-173 (286)
81 PRK08507 prephenate dehydrogen 98.8 1.3E-07 2.8E-12 87.0 12.8 127 145-280 1-142 (275)
82 TIGR01724 hmd_rel H2-forming N 98.7 1.1E-07 2.4E-12 87.9 12.2 89 155-247 31-129 (341)
83 PRK12491 pyrroline-5-carboxyla 98.7 4.3E-08 9.2E-13 90.1 8.8 98 145-246 3-110 (272)
84 PRK07679 pyrroline-5-carboxyla 98.7 7.9E-08 1.7E-12 88.6 10.6 101 143-247 2-113 (279)
85 PRK08268 3-hydroxy-acyl-CoA de 98.7 9.1E-08 2E-12 95.3 11.6 113 145-263 8-151 (507)
86 PRK05808 3-hydroxybutyryl-CoA 98.7 2.7E-07 5.9E-12 85.1 13.7 100 145-247 4-132 (282)
87 PRK15057 UDP-glucose 6-dehydro 98.7 8.9E-08 1.9E-12 92.3 10.8 123 145-276 1-160 (388)
88 PRK14188 bifunctional 5,10-met 98.7 6.3E-08 1.4E-12 89.6 9.2 79 140-235 154-234 (296)
89 cd01065 NAD_bind_Shikimate_DH 98.7 8.3E-08 1.8E-12 80.1 9.1 106 141-251 16-134 (155)
90 PRK06129 3-hydroxyacyl-CoA deh 98.7 1.8E-07 3.9E-12 87.5 12.2 136 145-291 3-167 (308)
91 PRK14618 NAD(P)H-dependent gly 98.7 6.1E-08 1.3E-12 91.3 9.1 98 144-247 4-123 (328)
92 PRK06035 3-hydroxyacyl-CoA deh 98.7 2.7E-07 5.7E-12 85.6 13.1 100 145-247 4-135 (291)
93 cd01075 NAD_bind_Leu_Phe_Val_D 98.7 3.3E-07 7.2E-12 80.5 12.4 105 139-251 23-134 (200)
94 TIGR00518 alaDH alanine dehydr 98.7 3.4E-08 7.3E-13 94.6 6.5 91 141-231 164-267 (370)
95 PRK06130 3-hydroxybutyryl-CoA 98.6 3.9E-07 8.5E-12 85.1 13.0 101 145-247 5-129 (311)
96 cd01080 NAD_bind_m-THF_DH_Cycl 98.6 1.5E-07 3.2E-12 80.4 9.0 90 140-252 40-130 (168)
97 PRK09287 6-phosphogluconate de 98.6 7.8E-08 1.7E-12 94.4 8.2 107 155-262 1-120 (459)
98 PRK14189 bifunctional 5,10-met 98.6 1.4E-07 3.1E-12 86.6 9.0 81 139-235 153-234 (285)
99 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.6 3.3E-07 7.3E-12 91.1 12.3 114 145-263 6-149 (503)
100 PRK14179 bifunctional 5,10-met 98.6 1.6E-07 3.6E-12 86.2 9.1 80 139-234 153-233 (284)
101 PRK13302 putative L-aspartate 98.6 1.2E-07 2.5E-12 87.2 7.5 104 143-251 5-118 (271)
102 PRK00094 gpsA NAD(P)H-dependen 98.6 1E-07 2.2E-12 89.2 7.3 89 145-235 2-109 (325)
103 COG0362 Gnd 6-phosphogluconate 98.6 1.1E-06 2.4E-11 82.8 13.0 152 145-308 4-169 (473)
104 PRK14806 bifunctional cyclohex 98.5 7.9E-07 1.7E-11 92.5 12.9 131 145-282 4-153 (735)
105 KOG1370 S-adenosylhomocysteine 98.5 1.4E-07 2.9E-12 86.1 6.0 90 141-235 211-305 (434)
106 PRK07680 late competence prote 98.5 3.9E-07 8.5E-12 83.7 8.5 98 145-246 1-109 (273)
107 TIGR00561 pntA NAD(P) transhyd 98.5 4.4E-06 9.6E-11 82.7 16.4 177 45-232 64-285 (511)
108 PF01210 NAD_Gly3P_dh_N: NAD-d 98.5 2.1E-07 4.6E-12 78.5 6.0 87 146-234 1-106 (157)
109 PRK06928 pyrroline-5-carboxyla 98.5 8.9E-07 1.9E-11 81.6 10.4 102 145-250 2-115 (277)
110 PRK06476 pyrroline-5-carboxyla 98.5 4.6E-07 1E-11 82.5 8.1 97 146-248 2-108 (258)
111 PRK14175 bifunctional 5,10-met 98.5 7.3E-07 1.6E-11 82.1 9.1 80 139-234 153-233 (286)
112 PF01488 Shikimate_DH: Shikima 98.5 3.1E-07 6.8E-12 75.5 5.8 93 141-236 9-114 (135)
113 PF10727 Rossmann-like: Rossma 98.4 1.9E-07 4.2E-12 75.9 4.1 87 143-231 9-104 (127)
114 PF03721 UDPG_MGDP_dh_N: UDP-g 98.4 6.8E-07 1.5E-11 77.5 7.1 132 145-276 1-171 (185)
115 COG2085 Predicted dinucleotide 98.4 1.3E-06 2.9E-11 76.3 8.1 86 145-233 2-95 (211)
116 PRK12557 H(2)-dependent methyl 98.4 1.8E-06 3.9E-11 81.8 9.2 91 155-246 31-132 (342)
117 PRK05472 redox-sensing transcr 98.3 3.6E-07 7.7E-12 81.0 4.0 129 100-247 59-201 (213)
118 COG0059 IlvC Ketol-acid reduct 98.3 1.1E-06 2.3E-11 80.4 7.0 85 141-227 15-105 (338)
119 cd05191 NAD_bind_amino_acid_DH 98.3 3.2E-06 6.9E-11 63.9 8.5 67 140-231 19-86 (86)
120 PRK14191 bifunctional 5,10-met 98.3 1E-05 2.2E-10 74.4 12.3 81 139-235 152-233 (285)
121 PTZ00431 pyrroline carboxylate 98.3 3.3E-06 7.3E-11 77.0 8.9 99 143-247 2-104 (260)
122 PRK11880 pyrroline-5-carboxyla 98.3 2.3E-06 4.9E-11 78.2 7.5 96 145-246 3-107 (267)
123 COG0677 WecC UDP-N-acetyl-D-ma 98.3 1E-05 2.2E-10 76.7 11.7 138 145-290 10-190 (436)
124 PRK10792 bifunctional 5,10-met 98.3 6.5E-06 1.4E-10 75.7 10.3 80 139-234 154-234 (285)
125 TIGR01915 npdG NADPH-dependent 98.3 2E-06 4.4E-11 76.4 6.8 89 145-236 1-106 (219)
126 cd01079 NAD_bind_m-THF_DH NAD 98.3 9.2E-06 2E-10 70.4 10.5 89 138-233 56-158 (197)
127 PF02882 THF_DHG_CYH_C: Tetrah 98.2 4.8E-06 1E-10 70.4 8.4 81 139-235 31-112 (160)
128 COG0345 ProC Pyrroline-5-carbo 98.2 6E-06 1.3E-10 75.3 9.4 99 145-251 2-113 (266)
129 PF02737 3HCDH_N: 3-hydroxyacy 98.2 4.8E-06 1E-10 71.9 8.3 98 146-246 1-127 (180)
130 PRK07634 pyrroline-5-carboxyla 98.2 8.9E-06 1.9E-10 73.2 10.1 101 143-248 3-114 (245)
131 PRK14178 bifunctional 5,10-met 98.2 5.5E-06 1.2E-10 76.0 8.1 80 139-234 147-227 (279)
132 cd05212 NAD_bind_m-THF_DH_Cycl 98.2 2E-05 4.4E-10 65.2 10.8 80 139-234 23-103 (140)
133 PLN02353 probable UDP-glucose 98.2 1.9E-05 4.2E-10 77.9 12.6 130 145-277 2-177 (473)
134 PRK14176 bifunctional 5,10-met 98.2 8.1E-06 1.8E-10 75.1 9.1 79 139-233 159-238 (287)
135 KOG2380 Prephenate dehydrogena 98.2 1.8E-05 3.8E-10 73.5 11.0 135 144-281 52-192 (480)
136 cd05311 NAD_bind_2_malic_enz N 98.2 3.3E-05 7.1E-10 69.1 12.5 149 140-304 21-196 (226)
137 PRK14192 bifunctional 5,10-met 98.2 1E-05 2.2E-10 74.8 9.3 80 139-234 154-234 (283)
138 PRK13304 L-aspartate dehydroge 98.1 7.4E-06 1.6E-10 75.0 8.0 102 145-251 2-115 (265)
139 PRK09424 pntA NAD(P) transhydr 98.1 1.8E-05 3.8E-10 78.6 11.1 178 45-232 65-286 (509)
140 PRK08229 2-dehydropantoate 2-r 98.1 9.8E-06 2.1E-10 76.6 9.1 103 145-251 3-126 (341)
141 PF01262 AlaDh_PNT_C: Alanine 98.1 2.7E-06 5.8E-11 72.6 4.6 91 141-231 17-139 (168)
142 PRK14173 bifunctional 5,10-met 98.1 6E-05 1.3E-09 69.4 13.4 134 139-305 150-284 (287)
143 PRK14190 bifunctional 5,10-met 98.1 2.2E-05 4.7E-10 72.3 10.0 114 139-288 153-267 (284)
144 COG0686 Ald Alanine dehydrogen 98.1 4.5E-06 9.8E-11 76.7 5.1 90 141-231 165-268 (371)
145 PRK14170 bifunctional 5,10-met 98.1 3E-05 6.4E-10 71.3 10.4 81 139-235 152-233 (284)
146 PRK14169 bifunctional 5,10-met 98.1 8.6E-05 1.9E-09 68.3 13.3 80 139-234 151-231 (282)
147 TIGR01035 hemA glutamyl-tRNA r 98.1 5.3E-06 1.2E-10 80.8 5.5 94 141-237 177-283 (417)
148 PRK06522 2-dehydropantoate 2-r 98.0 3.6E-05 7.8E-10 71.3 10.4 103 145-251 1-119 (304)
149 PRK14183 bifunctional 5,10-met 98.0 2.5E-05 5.3E-10 71.7 9.0 80 139-234 152-232 (281)
150 PRK14171 bifunctional 5,10-met 98.0 4.1E-05 9E-10 70.5 10.2 80 139-234 154-234 (288)
151 PRK14193 bifunctional 5,10-met 98.0 0.00011 2.4E-09 67.6 13.0 112 139-287 153-267 (284)
152 PRK12921 2-dehydropantoate 2-r 98.0 2.4E-05 5.2E-10 72.6 8.8 103 145-251 1-121 (305)
153 PRK14177 bifunctional 5,10-met 98.0 3.2E-05 6.9E-10 71.1 9.2 80 139-234 154-234 (284)
154 cd05213 NAD_bind_Glutamyl_tRNA 98.0 1.5E-05 3.3E-10 74.7 7.3 90 142-233 176-275 (311)
155 KOG2653 6-phosphogluconate deh 98.0 6.4E-05 1.4E-09 70.2 11.1 152 145-307 7-172 (487)
156 COG0240 GpsA Glycerol-3-phosph 98.0 2E-05 4.3E-10 73.6 7.8 94 145-240 2-114 (329)
157 PRK14172 bifunctional 5,10-met 98.0 5.1E-05 1.1E-09 69.6 10.3 80 139-234 153-233 (278)
158 PRK14186 bifunctional 5,10-met 98.0 3.6E-05 7.7E-10 71.3 9.2 118 139-288 153-271 (297)
159 PRK14166 bifunctional 5,10-met 98.0 3.7E-05 8E-10 70.7 9.1 80 139-234 152-232 (282)
160 TIGR03376 glycerol3P_DH glycer 98.0 3E-05 6.5E-10 73.5 8.5 89 146-236 1-121 (342)
161 PRK14187 bifunctional 5,10-met 98.0 4.1E-05 8.9E-10 70.7 9.1 80 139-234 155-235 (294)
162 PRK06141 ornithine cyclodeamin 97.9 3.7E-05 8.1E-10 72.1 8.9 94 143-243 124-230 (314)
163 PRK14180 bifunctional 5,10-met 97.9 4.2E-05 9.1E-10 70.3 8.9 80 139-234 153-233 (282)
164 PLN00203 glutamyl-tRNA reducta 97.9 1.5E-05 3.2E-10 79.5 6.5 90 141-233 263-371 (519)
165 PLN02516 methylenetetrahydrofo 97.9 4.3E-05 9.4E-10 70.7 9.1 134 139-303 162-297 (299)
166 PTZ00345 glycerol-3-phosphate 97.9 3.7E-05 8E-10 73.5 8.9 93 143-237 10-135 (365)
167 PLN02616 tetrahydrofolate dehy 97.9 4.7E-05 1E-09 71.9 9.0 80 139-234 226-306 (364)
168 PRK14182 bifunctional 5,10-met 97.9 5.5E-05 1.2E-09 69.5 9.2 81 139-235 152-233 (282)
169 PLN02897 tetrahydrofolate dehy 97.9 4.6E-05 9.9E-10 71.6 8.7 80 139-234 209-289 (345)
170 PRK00045 hemA glutamyl-tRNA re 97.9 2.2E-05 4.9E-10 76.6 6.7 89 141-232 179-281 (423)
171 PRK14181 bifunctional 5,10-met 97.9 6.5E-05 1.4E-09 69.2 9.1 81 139-235 148-233 (287)
172 PRK14184 bifunctional 5,10-met 97.9 5.5E-05 1.2E-09 69.7 8.5 80 139-234 152-236 (286)
173 TIGR00507 aroE shikimate 5-deh 97.8 0.00011 2.3E-09 67.5 9.4 109 142-257 115-236 (270)
174 PRK14174 bifunctional 5,10-met 97.8 8.2E-05 1.8E-09 68.9 8.6 80 139-234 154-238 (295)
175 COG0190 FolD 5,10-methylene-te 97.8 7.6E-05 1.6E-09 68.1 7.9 115 139-289 151-266 (283)
176 PRK14185 bifunctional 5,10-met 97.8 0.00011 2.5E-09 67.7 9.1 80 139-234 152-236 (293)
177 PRK00258 aroE shikimate 5-dehy 97.8 5.3E-05 1.1E-09 69.8 6.5 108 141-250 120-238 (278)
178 PRK14168 bifunctional 5,10-met 97.8 0.00013 2.9E-09 67.5 8.9 134 139-302 156-294 (297)
179 PF13380 CoA_binding_2: CoA bi 97.8 0.0002 4.2E-09 57.4 8.8 100 145-251 1-104 (116)
180 cd01078 NAD_bind_H4MPT_DH NADP 97.7 7.1E-05 1.5E-09 65.1 6.6 93 140-236 24-134 (194)
181 PRK14620 NAD(P)H-dependent gly 97.7 0.00012 2.5E-09 69.0 8.2 88 145-234 1-109 (326)
182 TIGR02371 ala_DH_arch alanine 97.7 8.9E-05 1.9E-09 69.9 7.2 84 144-233 128-224 (325)
183 PRK14167 bifunctional 5,10-met 97.7 0.00018 3.9E-09 66.7 9.0 80 139-234 152-236 (297)
184 PF02153 PDH: Prephenate dehyd 97.7 0.00039 8.4E-09 63.4 11.1 119 159-281 1-133 (258)
185 PRK06249 2-dehydropantoate 2-r 97.7 0.00052 1.1E-08 64.3 12.0 106 145-254 6-128 (313)
186 PRK11730 fadB multifunctional 97.7 0.00029 6.3E-09 73.2 11.2 110 145-258 314-452 (715)
187 PRK00676 hemA glutamyl-tRNA re 97.7 0.00018 3.8E-09 67.9 8.7 95 141-236 171-266 (338)
188 PRK12439 NAD(P)H-dependent gly 97.7 0.00022 4.7E-09 67.7 9.0 87 145-234 8-114 (341)
189 TIGR02354 thiF_fam2 thiamine b 97.6 0.00024 5.2E-09 62.4 8.4 92 140-232 17-146 (200)
190 COG1250 FadB 3-hydroxyacyl-CoA 97.6 0.0007 1.5E-08 63.1 11.2 114 144-262 3-146 (307)
191 TIGR02441 fa_ox_alpha_mit fatt 97.6 0.00038 8.2E-09 72.5 10.2 110 145-259 336-475 (737)
192 TIGR02440 FadJ fatty oxidation 97.6 0.00066 1.4E-08 70.4 11.6 111 145-259 305-445 (699)
193 COG1004 Ugd Predicted UDP-gluc 97.5 0.00085 1.8E-08 64.0 11.2 131 145-276 1-169 (414)
194 TIGR02437 FadB fatty oxidation 97.5 0.00068 1.5E-08 70.4 11.1 99 145-246 314-441 (714)
195 PRK11154 fadJ multifunctional 97.5 0.0013 2.8E-08 68.4 13.1 110 145-258 310-449 (708)
196 cd05313 NAD_bind_2_Glu_DH NAD( 97.5 0.0051 1.1E-07 55.9 15.3 150 140-303 34-221 (254)
197 PRK07340 ornithine cyclodeamin 97.5 0.0002 4.2E-09 67.0 6.4 84 143-233 124-219 (304)
198 cd01076 NAD_bind_1_Glu_DH NAD( 97.5 0.0033 7.2E-08 56.3 13.6 109 140-257 27-159 (227)
199 PRK13940 glutamyl-tRNA reducta 97.4 0.00037 8E-09 67.8 7.6 86 141-231 178-273 (414)
200 PF13241 NAD_binding_7: Putati 97.4 5.7E-05 1.2E-09 59.1 1.6 87 141-232 4-92 (103)
201 PTZ00117 malate dehydrogenase; 97.4 0.00098 2.1E-08 62.7 10.0 114 142-256 3-151 (319)
202 TIGR02992 ectoine_eutC ectoine 97.4 0.0007 1.5E-08 63.9 9.0 84 143-232 128-225 (326)
203 PRK09310 aroDE bifunctional 3- 97.4 0.00044 9.6E-09 68.6 7.9 101 139-251 327-434 (477)
204 PRK08618 ornithine cyclodeamin 97.4 0.00034 7.4E-09 66.0 6.8 84 143-233 126-223 (325)
205 PRK08306 dipicolinate synthase 97.4 0.0017 3.7E-08 60.5 11.0 110 143-259 1-122 (296)
206 PRK14982 acyl-ACP reductase; P 97.4 0.00065 1.4E-08 64.3 8.2 95 138-238 149-253 (340)
207 TIGR01546 GAPDH-II_archae glyc 97.4 0.00049 1.1E-08 64.9 7.3 83 147-232 1-109 (333)
208 TIGR01763 MalateDH_bact malate 97.4 0.00074 1.6E-08 63.2 8.5 111 145-256 2-147 (305)
209 PRK12549 shikimate 5-dehydroge 97.4 0.00058 1.3E-08 63.2 7.7 90 142-234 125-230 (284)
210 PRK06718 precorrin-2 dehydroge 97.4 0.00038 8.2E-09 61.2 6.0 41 137-177 3-43 (202)
211 PLN02477 glutamate dehydrogena 97.3 0.01 2.2E-07 57.7 16.2 146 139-303 201-378 (410)
212 COG0373 HemA Glutamyl-tRNA red 97.3 0.00051 1.1E-08 66.3 7.1 90 141-233 175-276 (414)
213 PRK06046 alanine dehydrogenase 97.3 0.00063 1.4E-08 64.2 7.5 82 144-232 129-224 (326)
214 PF01113 DapB_N: Dihydrodipico 97.3 0.0018 4E-08 52.3 9.1 97 146-247 2-114 (124)
215 PRK06444 prephenate dehydrogen 97.3 0.00079 1.7E-08 58.9 7.4 62 145-235 1-63 (197)
216 PRK08291 ectoine utilization p 97.3 0.00068 1.5E-08 64.1 7.5 83 143-231 131-227 (330)
217 COG1064 AdhP Zn-dependent alco 97.3 0.00073 1.6E-08 63.7 7.3 84 143-232 166-260 (339)
218 PRK14031 glutamate dehydrogena 97.3 0.02 4.3E-07 56.1 17.3 152 139-303 223-410 (444)
219 COG1748 LYS9 Saccharopine dehy 97.3 0.0008 1.7E-08 64.6 7.6 99 145-250 2-117 (389)
220 TIGR01921 DAP-DH diaminopimela 97.3 0.00075 1.6E-08 63.4 7.2 102 145-251 4-115 (324)
221 PRK13301 putative L-aspartate 97.3 0.0014 3E-08 59.7 8.5 100 145-249 3-114 (267)
222 PF02423 OCD_Mu_crystall: Orni 97.3 0.00085 1.8E-08 63.0 7.5 87 145-235 129-228 (313)
223 COG1712 Predicted dinucleotide 97.2 0.0011 2.3E-08 58.6 7.4 92 145-241 1-101 (255)
224 PRK13303 L-aspartate dehydroge 97.2 0.00098 2.1E-08 61.1 7.6 102 145-251 2-115 (265)
225 cd05211 NAD_bind_Glu_Leu_Phe_V 97.2 0.0054 1.2E-07 54.5 12.0 104 140-251 19-145 (217)
226 COG2423 Predicted ornithine cy 97.2 0.0014 3E-08 61.8 8.3 82 145-232 131-226 (330)
227 smart00859 Semialdhyde_dh Semi 97.2 0.00099 2.2E-08 53.4 6.1 85 146-232 1-100 (122)
228 PRK06823 ornithine cyclodeamin 97.2 0.0016 3.6E-08 61.1 8.4 83 144-232 128-223 (315)
229 PRK06199 ornithine cyclodeamin 97.1 0.0011 2.3E-08 64.0 6.8 87 144-233 155-261 (379)
230 PRK14030 glutamate dehydrogena 97.1 0.019 4.2E-07 56.1 15.2 151 139-303 223-411 (445)
231 cd00650 LDH_MDH_like NAD-depen 97.1 0.0013 2.8E-08 60.1 6.6 109 147-257 1-148 (263)
232 PF01408 GFO_IDH_MocA: Oxidore 97.0 0.00097 2.1E-08 52.9 4.9 101 146-251 2-115 (120)
233 PRK06407 ornithine cyclodeamin 97.0 0.0025 5.4E-08 59.5 8.3 83 144-232 117-213 (301)
234 PRK07589 ornithine cyclodeamin 97.0 0.0025 5.3E-08 60.6 7.8 85 144-232 129-226 (346)
235 KOG0023 Alcohol dehydrogenase, 97.0 0.0013 2.8E-08 61.0 5.5 36 143-178 181-216 (360)
236 PRK08269 3-hydroxybutyryl-CoA 96.9 0.011 2.3E-07 55.7 11.5 90 155-246 1-128 (314)
237 KOG2304 3-hydroxyacyl-CoA dehy 96.9 0.0004 8.6E-09 61.4 1.7 118 142-263 9-161 (298)
238 PRK09414 glutamate dehydrogena 96.9 0.009 1.9E-07 58.6 11.1 110 140-257 228-367 (445)
239 PRK00048 dihydrodipicolinate r 96.9 0.0079 1.7E-07 54.8 9.9 60 145-204 2-69 (257)
240 TIGR01470 cysG_Nterm siroheme 96.9 0.036 7.8E-07 48.8 13.7 41 138-178 3-43 (205)
241 PRK06223 malate dehydrogenase; 96.9 0.004 8.6E-08 58.1 8.1 58 145-203 3-78 (307)
242 PF00185 OTCace: Aspartate/orn 96.9 0.0087 1.9E-07 50.5 9.3 89 143-231 1-120 (158)
243 PRK12548 shikimate 5-dehydroge 96.8 0.0045 9.7E-08 57.4 8.2 37 141-177 123-160 (289)
244 COG0026 PurK Phosphoribosylami 96.8 0.0024 5.2E-08 60.4 6.0 58 144-201 1-68 (375)
245 PF02558 ApbA: Ketopantoate re 96.8 0.0018 4E-08 53.6 4.7 105 147-254 1-123 (151)
246 PTZ00082 L-lactate dehydrogena 96.8 0.0055 1.2E-07 57.7 8.3 111 142-254 4-153 (321)
247 TIGR02964 xanthine_xdhC xanthi 96.8 0.0093 2E-07 54.0 9.4 88 145-250 101-188 (246)
248 COG4007 Predicted dehydrogenas 96.8 0.0049 1.1E-07 55.5 7.2 80 156-236 33-122 (340)
249 PF01118 Semialdhyde_dh: Semia 96.7 0.0029 6.2E-08 50.8 5.2 83 146-233 1-99 (121)
250 TIGR01809 Shik-DH-AROM shikima 96.7 0.0019 4.1E-08 59.7 4.5 65 142-206 123-201 (282)
251 TIGR02356 adenyl_thiF thiazole 96.7 0.0042 9.2E-08 54.5 6.5 37 140-176 17-54 (202)
252 PF00208 ELFV_dehydrog: Glutam 96.7 0.014 3E-07 52.9 9.6 104 141-251 29-165 (244)
253 PRK06719 precorrin-2 dehydroge 96.7 0.0035 7.5E-08 52.9 5.4 41 136-176 5-45 (157)
254 cd05312 NAD_bind_1_malic_enz N 96.6 0.17 3.8E-06 46.5 16.6 177 104-304 4-222 (279)
255 TIGR02717 AcCoA-syn-alpha acet 96.6 0.022 4.8E-07 56.1 11.5 109 142-253 5-125 (447)
256 cd05291 HicDH_like L-2-hydroxy 96.6 0.0081 1.8E-07 56.1 8.1 86 145-231 1-117 (306)
257 PRK01710 murD UDP-N-acetylmura 96.6 0.013 2.9E-07 57.8 9.7 109 141-250 11-144 (458)
258 TIGR02853 spore_dpaA dipicolin 96.6 0.024 5.1E-07 52.6 10.7 109 144-259 1-121 (287)
259 PRK12475 thiamine/molybdopteri 96.6 0.0061 1.3E-07 57.8 6.9 38 140-177 20-58 (338)
260 cd00762 NAD_bind_malic_enz NAD 96.5 0.071 1.5E-06 48.4 13.4 178 104-304 4-223 (254)
261 PTZ00079 NADP-specific glutama 96.5 0.044 9.5E-07 53.7 12.8 151 139-303 232-420 (454)
262 PRK00683 murD UDP-N-acetylmura 96.5 0.0045 9.7E-08 60.3 6.1 106 144-249 3-128 (418)
263 COG0334 GdhA Glutamate dehydro 96.5 0.05 1.1E-06 52.4 12.8 146 139-304 202-380 (411)
264 cd01339 LDH-like_MDH L-lactate 96.5 0.0055 1.2E-07 57.0 6.3 57 147-204 1-75 (300)
265 COG0569 TrkA K+ transport syst 96.5 0.0035 7.6E-08 56.0 4.5 64 145-208 1-79 (225)
266 PF03720 UDPG_MGDP_dh_C: UDP-g 96.5 0.0056 1.2E-07 48.0 5.1 76 154-230 17-100 (106)
267 PRK12749 quinate/shikimate deh 96.4 0.022 4.8E-07 52.8 9.5 37 141-177 121-158 (288)
268 PRK00856 pyrB aspartate carbam 96.4 0.028 6.1E-07 52.6 10.2 62 142-203 154-221 (305)
269 cd05293 LDH_1 A subgroup of L- 96.4 0.014 3.1E-07 54.7 8.1 107 144-253 3-144 (312)
270 cd05297 GH4_alpha_glucosidase_ 96.3 0.0085 1.8E-07 58.6 6.7 107 145-252 1-165 (423)
271 COG1648 CysG Siroheme synthase 96.3 0.0061 1.3E-07 53.9 5.0 88 137-230 5-102 (210)
272 TIGR00036 dapB dihydrodipicoli 96.3 0.024 5.3E-07 51.9 9.1 101 145-250 2-119 (266)
273 TIGR01850 argC N-acetyl-gamma- 96.3 0.017 3.7E-07 55.0 8.2 83 145-233 1-101 (346)
274 PRK05708 2-dehydropantoate 2-r 96.3 0.029 6.2E-07 52.4 9.6 107 145-254 3-126 (305)
275 PRK00066 ldh L-lactate dehydro 96.2 0.0093 2E-07 56.0 6.1 89 143-231 5-122 (315)
276 TIGR03026 NDP-sugDHase nucleot 96.2 0.022 4.8E-07 55.4 9.0 86 142-230 311-409 (411)
277 PF13478 XdhC_C: XdhC Rossmann 96.2 0.011 2.3E-07 48.7 5.6 85 147-254 1-85 (136)
278 PRK11579 putative oxidoreducta 96.2 0.021 4.6E-07 54.1 8.5 64 145-208 5-77 (346)
279 cd05292 LDH_2 A subgroup of L- 96.2 0.0094 2E-07 55.8 5.8 61 145-206 1-78 (308)
280 KOG2711 Glycerol-3-phosphate d 96.2 0.021 4.5E-07 53.6 7.8 90 142-233 19-141 (372)
281 PRK09496 trkA potassium transp 96.1 0.015 3.2E-07 57.0 7.1 64 145-208 1-78 (453)
282 PRK14106 murD UDP-N-acetylmura 96.1 0.038 8.2E-07 54.2 10.0 108 141-248 2-133 (450)
283 PRK07232 bifunctional malic en 96.1 0.2 4.4E-06 52.3 15.5 157 90-282 153-326 (752)
284 cd00757 ThiF_MoeB_HesA_family 96.1 0.013 2.8E-07 52.4 6.0 147 140-307 17-206 (228)
285 PLN02968 Probable N-acetyl-gam 96.1 0.018 4E-07 55.5 7.4 94 142-241 36-144 (381)
286 PRK06270 homoserine dehydrogen 96.1 0.04 8.8E-07 52.3 9.6 107 145-251 3-146 (341)
287 COG0771 MurD UDP-N-acetylmuram 96.0 0.013 2.8E-07 57.5 6.0 119 142-261 5-156 (448)
288 PRK12862 malic enzyme; Reviewe 96.0 0.23 5E-06 52.1 15.5 158 90-283 161-335 (763)
289 TIGR00670 asp_carb_tr aspartat 96.0 0.059 1.3E-06 50.3 10.1 90 142-231 148-263 (301)
290 PRK06019 phosphoribosylaminoim 96.0 0.015 3.3E-07 55.7 6.4 58 144-201 2-69 (372)
291 PF02254 TrkA_N: TrkA-N domain 96.0 0.0084 1.8E-07 47.2 3.8 80 147-228 1-93 (116)
292 COG0169 AroE Shikimate 5-dehyd 95.9 0.027 6E-07 52.0 7.5 104 141-248 123-242 (283)
293 PRK04207 glyceraldehyde-3-phos 95.9 0.027 6E-07 53.5 7.8 62 145-206 2-89 (341)
294 PRK00436 argC N-acetyl-gamma-g 95.9 0.025 5.5E-07 53.7 7.5 87 145-236 3-104 (343)
295 PRK01713 ornithine carbamoyltr 95.9 0.15 3.2E-06 48.3 12.5 91 141-231 153-275 (334)
296 PF00056 Ldh_1_N: lactate/mala 95.8 0.006 1.3E-07 50.4 2.6 60 145-204 1-78 (141)
297 COG1893 ApbA Ketopantoate redu 95.8 0.16 3.4E-06 47.6 12.2 136 145-284 1-154 (307)
298 TIGR02355 moeB molybdopterin s 95.8 0.03 6.5E-07 50.5 7.0 37 140-176 20-57 (240)
299 COG5322 Predicted dehydrogenas 95.7 0.045 9.8E-07 49.8 7.7 97 138-239 161-269 (351)
300 PRK05690 molybdopterin biosynt 95.7 0.027 5.8E-07 51.0 6.4 36 140-175 28-64 (245)
301 PRK02472 murD UDP-N-acetylmura 95.7 0.074 1.6E-06 52.1 10.0 109 141-249 2-134 (447)
302 PLN02819 lysine-ketoglutarate 95.7 0.021 4.6E-07 61.4 6.5 64 143-206 568-659 (1042)
303 COG0281 SfcA Malic enzyme [Ene 95.7 0.3 6.5E-06 47.2 13.5 179 89-304 166-370 (432)
304 PLN02527 aspartate carbamoyltr 95.7 0.1 2.3E-06 48.8 10.4 89 142-230 149-265 (306)
305 PLN02353 probable UDP-glucose 95.7 0.055 1.2E-06 53.7 8.9 99 141-242 321-456 (473)
306 PRK01390 murD UDP-N-acetylmura 95.7 0.059 1.3E-06 53.1 9.1 109 141-249 6-140 (460)
307 PRK02006 murD UDP-N-acetylmura 95.6 0.029 6.2E-07 56.0 7.0 110 142-251 5-149 (498)
308 PRK12861 malic enzyme; Reviewe 95.6 0.43 9.3E-06 50.0 15.6 157 90-283 157-331 (764)
309 PRK08644 thiamine biosynthesis 95.6 0.059 1.3E-06 47.7 8.1 37 140-176 24-61 (212)
310 PRK05678 succinyl-CoA syntheta 95.6 0.12 2.6E-06 48.0 10.5 108 144-254 8-121 (291)
311 PRK14027 quinate/shikimate deh 95.6 0.037 8.1E-07 51.2 6.9 65 142-206 125-205 (283)
312 TIGR01761 thiaz-red thiazoliny 95.6 0.063 1.4E-06 51.0 8.6 106 145-253 4-119 (343)
313 PRK10637 cysG siroheme synthas 95.5 0.027 5.9E-07 55.6 6.3 90 137-231 5-103 (457)
314 PRK03369 murD UDP-N-acetylmura 95.5 0.02 4.3E-07 57.1 5.3 108 142-249 10-143 (488)
315 PRK00779 ornithine carbamoyltr 95.5 0.079 1.7E-06 49.5 9.0 90 142-231 150-265 (304)
316 TIGR00658 orni_carb_tr ornithi 95.5 0.25 5.4E-06 46.2 12.3 90 142-231 146-264 (304)
317 PF03435 Saccharop_dh: Sacchar 95.5 0.0079 1.7E-07 57.8 2.3 79 147-230 1-97 (386)
318 PRK03659 glutathione-regulated 95.5 0.022 4.8E-07 58.2 5.6 87 144-232 400-499 (601)
319 PRK06349 homoserine dehydrogen 95.5 0.076 1.6E-06 52.0 9.1 103 145-251 4-125 (426)
320 PF02629 CoA_binding: CoA bind 95.4 0.048 1E-06 41.8 6.1 61 145-205 4-72 (96)
321 cd01487 E1_ThiF_like E1_ThiF_l 95.4 0.072 1.6E-06 45.6 7.6 32 146-177 1-33 (174)
322 PLN02520 bifunctional 3-dehydr 95.4 0.027 5.8E-07 56.7 5.7 38 141-178 376-413 (529)
323 COG0673 MviM Predicted dehydro 95.4 0.071 1.5E-06 49.9 8.3 64 145-208 4-80 (342)
324 PRK08762 molybdopterin biosynt 95.4 0.058 1.3E-06 51.9 7.8 37 140-176 131-168 (376)
325 PF13460 NAD_binding_10: NADH( 95.4 0.022 4.8E-07 48.3 4.4 61 147-207 1-72 (183)
326 cd01483 E1_enzyme_family Super 95.3 0.11 2.5E-06 42.5 8.5 32 146-177 1-33 (143)
327 PRK07688 thiamine/molybdopteri 95.3 0.047 1E-06 51.9 6.9 37 140-176 20-57 (339)
328 PRK02255 putrescine carbamoylt 95.3 0.11 2.5E-06 49.2 9.4 91 141-231 151-272 (338)
329 PRK10669 putative cation:proto 95.3 0.028 6.1E-07 56.9 5.6 82 145-228 418-512 (558)
330 PF03949 Malic_M: Malic enzyme 95.2 0.24 5.2E-06 45.0 10.8 109 104-235 4-145 (255)
331 cd00300 LDH_like L-lactate deh 95.2 0.049 1.1E-06 50.8 6.5 85 147-232 1-116 (300)
332 PRK08223 hypothetical protein; 95.2 0.076 1.6E-06 49.2 7.6 36 140-175 23-59 (287)
333 PRK02102 ornithine carbamoyltr 95.2 0.13 2.8E-06 48.7 9.2 90 142-231 153-273 (331)
334 cd01338 MDH_choloroplast_like 95.2 0.16 3.5E-06 47.8 9.9 97 145-243 3-138 (322)
335 PRK05086 malate dehydrogenase; 95.1 0.1 2.2E-06 49.0 8.5 90 145-234 1-121 (312)
336 PF04016 DUF364: Domain of unk 95.1 0.039 8.4E-07 46.0 4.9 85 142-232 9-96 (147)
337 PRK04690 murD UDP-N-acetylmura 95.1 0.05 1.1E-06 53.9 6.5 108 142-249 6-141 (468)
338 PLN02602 lactate dehydrogenase 95.1 0.057 1.2E-06 51.5 6.6 86 145-231 38-154 (350)
339 COG2344 AT-rich DNA-binding pr 95.1 0.028 6E-07 48.5 3.9 60 146-205 86-156 (211)
340 cd05294 LDH-like_MDH_nadp A la 95.0 0.25 5.4E-06 46.3 10.7 59 145-204 1-81 (309)
341 COG1004 Ugd Predicted UDP-gluc 95.0 0.067 1.4E-06 51.3 6.8 84 142-229 308-406 (414)
342 PRK09496 trkA potassium transp 95.0 0.055 1.2E-06 53.0 6.5 87 142-230 229-330 (453)
343 PRK05562 precorrin-2 dehydroge 95.0 1.2 2.6E-05 39.7 14.4 42 137-178 18-59 (223)
344 PRK13814 pyrB aspartate carbam 95.0 0.16 3.4E-06 47.6 9.2 60 142-201 155-223 (310)
345 PRK00421 murC UDP-N-acetylmura 94.9 0.047 1E-06 53.9 5.9 108 142-249 5-133 (461)
346 PRK12550 shikimate 5-dehydroge 94.9 0.12 2.6E-06 47.6 8.1 62 144-205 122-188 (272)
347 PRK03562 glutathione-regulated 94.9 0.041 8.9E-07 56.5 5.5 84 144-229 400-496 (621)
348 PLN02948 phosphoribosylaminoim 94.9 0.095 2.1E-06 53.3 8.0 64 141-204 19-92 (577)
349 PRK04284 ornithine carbamoyltr 94.8 0.17 3.6E-06 48.0 9.0 90 142-231 153-274 (332)
350 PF03447 NAD_binding_3: Homose 94.8 0.041 8.8E-07 43.6 4.1 96 151-251 1-113 (117)
351 PLN02342 ornithine carbamoyltr 94.8 0.22 4.9E-06 47.4 9.7 91 141-231 191-307 (348)
352 PRK04308 murD UDP-N-acetylmura 94.7 0.27 5.9E-06 48.2 10.7 109 142-250 3-137 (445)
353 PRK04148 hypothetical protein; 94.7 0.062 1.3E-06 44.1 5.1 61 143-204 16-86 (134)
354 PRK11891 aspartate carbamoyltr 94.7 0.2 4.4E-06 48.9 9.5 146 61-231 178-355 (429)
355 PRK06392 homoserine dehydrogen 94.7 0.23 5.1E-06 46.9 9.6 105 146-251 2-137 (326)
356 cd05188 MDR Medium chain reduc 94.7 0.32 6.8E-06 43.2 10.2 88 142-234 133-235 (271)
357 PRK07877 hypothetical protein; 94.6 0.15 3.2E-06 53.1 8.8 94 140-237 103-235 (722)
358 PRK07411 hypothetical protein; 94.6 0.085 1.9E-06 51.1 6.7 83 140-223 34-155 (390)
359 cd01486 Apg7 Apg7 is an E1-lik 94.6 0.13 2.8E-06 47.9 7.5 29 146-174 1-30 (307)
360 PLN02819 lysine-ketoglutarate 94.6 0.096 2.1E-06 56.5 7.5 88 142-231 201-338 (1042)
361 PRK01368 murD UDP-N-acetylmura 94.6 0.061 1.3E-06 53.1 5.7 107 142-249 4-130 (454)
362 TIGR01759 MalateDH-SF1 malate 94.6 0.18 4E-06 47.5 8.6 93 146-240 5-136 (323)
363 cd00704 MDH Malate dehydrogena 94.6 0.32 6.9E-06 45.9 10.3 95 146-242 2-135 (323)
364 PRK08300 acetaldehyde dehydrog 94.6 0.096 2.1E-06 48.8 6.6 83 144-231 4-101 (302)
365 PRK15182 Vi polysaccharide bio 94.6 0.39 8.5E-06 47.0 11.2 94 139-235 309-416 (425)
366 PRK11863 N-acetyl-gamma-glutam 94.6 0.13 2.7E-06 48.4 7.4 76 145-231 3-81 (313)
367 TIGR01161 purK phosphoribosyla 94.5 0.069 1.5E-06 50.7 5.7 56 146-201 1-66 (352)
368 PF05222 AlaDh_PNT_N: Alanine 94.5 0.35 7.5E-06 39.7 9.1 93 158-260 18-119 (136)
369 PRK05600 thiamine biosynthesis 94.5 0.095 2.1E-06 50.4 6.6 37 140-176 37-74 (370)
370 PRK05597 molybdopterin biosynt 94.5 0.097 2.1E-06 50.0 6.6 37 140-176 24-61 (355)
371 COG3288 PntA NAD/NADP transhyd 94.5 0.064 1.4E-06 49.7 5.0 90 141-231 161-281 (356)
372 PRK11064 wecC UDP-N-acetyl-D-m 94.4 0.12 2.5E-06 50.5 7.1 67 140-206 316-397 (415)
373 PRK03515 ornithine carbamoyltr 94.4 0.14 3.1E-06 48.5 7.5 63 141-203 153-233 (336)
374 TIGR01202 bchC 2-desacetyl-2-h 94.4 0.11 2.4E-06 48.2 6.6 85 143-232 144-232 (308)
375 PRK07806 short chain dehydroge 94.3 0.17 3.7E-06 44.8 7.6 36 142-177 4-40 (248)
376 PRK07878 molybdopterin biosynt 94.3 0.12 2.6E-06 50.1 6.8 37 140-176 38-75 (392)
377 PRK13529 malate dehydrogenase; 94.3 6.8 0.00015 39.7 19.1 211 64-304 237-499 (563)
378 PRK09880 L-idonate 5-dehydroge 94.2 0.14 3.1E-06 48.1 7.2 85 143-232 169-267 (343)
379 CHL00194 ycf39 Ycf39; Provisio 94.2 0.089 1.9E-06 49.0 5.6 60 145-204 1-73 (317)
380 PLN00106 malate dehydrogenase 94.1 0.16 3.5E-06 47.9 7.1 92 143-234 17-138 (323)
381 PRK12562 ornithine carbamoyltr 94.1 0.34 7.4E-06 45.9 9.3 92 141-232 153-276 (334)
382 TIGR03649 ergot_EASG ergot alk 94.1 0.13 2.9E-06 46.8 6.4 61 146-206 1-78 (285)
383 PRK05442 malate dehydrogenase; 94.1 0.43 9.4E-06 45.1 9.9 94 145-240 5-137 (326)
384 PF00899 ThiF: ThiF family; I 94.0 0.057 1.2E-06 44.0 3.4 33 144-176 2-35 (135)
385 PF00070 Pyr_redox: Pyridine n 94.0 0.11 2.4E-06 38.1 4.7 35 146-180 1-35 (80)
386 TIGR03366 HpnZ_proposed putati 94.0 0.2 4.4E-06 45.7 7.5 36 143-178 120-156 (280)
387 PRK03803 murD UDP-N-acetylmura 93.9 0.32 7E-06 47.7 9.2 106 143-249 5-134 (448)
388 TIGR01019 sucCoAalpha succinyl 93.9 0.62 1.3E-05 43.2 10.4 107 144-253 6-118 (286)
389 KOG4230 C1-tetrahydrofolate sy 93.9 0.21 4.6E-06 49.9 7.6 137 139-305 157-294 (935)
390 cd08230 glucose_DH Glucose deh 93.9 0.15 3.3E-06 48.1 6.6 85 143-232 172-270 (355)
391 TIGR01087 murD UDP-N-acetylmur 93.9 0.27 5.8E-06 48.0 8.5 104 146-250 1-129 (433)
392 cd05290 LDH_3 A subgroup of L- 93.9 0.098 2.1E-06 49.0 5.2 59 146-204 1-77 (307)
393 TIGR03316 ygeW probable carbam 93.8 0.33 7.2E-06 46.4 8.8 63 141-203 167-253 (357)
394 PTZ00325 malate dehydrogenase; 93.8 0.17 3.6E-06 47.7 6.7 64 141-204 5-85 (321)
395 PRK00141 murD UDP-N-acetylmura 93.7 0.088 1.9E-06 52.2 4.9 110 141-250 12-148 (473)
396 TIGR01758 MDH_euk_cyt malate d 93.7 0.52 1.1E-05 44.5 9.9 93 146-240 1-132 (324)
397 PLN02586 probable cinnamyl alc 93.7 0.32 6.9E-06 46.3 8.5 85 143-232 183-279 (360)
398 PF05368 NmrA: NmrA-like famil 93.7 0.11 2.4E-06 46.0 4.9 60 147-206 1-75 (233)
399 cd08237 ribitol-5-phosphate_DH 93.6 0.31 6.8E-06 45.9 8.3 88 143-232 163-257 (341)
400 TIGR03215 ac_ald_DH_ac acetald 93.6 0.22 4.7E-06 46.2 6.9 64 145-208 2-77 (285)
401 PLN03129 NADP-dependent malic 93.6 6.7 0.00015 39.8 17.7 185 88-304 287-518 (581)
402 PLN02662 cinnamyl-alcohol dehy 93.6 0.24 5.1E-06 45.9 7.2 62 143-204 3-85 (322)
403 cd01337 MDH_glyoxysomal_mitoch 93.6 0.39 8.4E-06 45.1 8.6 89 145-233 1-119 (310)
404 PLN00112 malate dehydrogenase 93.5 0.42 9.1E-06 47.0 9.0 97 145-243 101-236 (444)
405 TIGR01772 MDH_euk_gproteo mala 93.5 0.31 6.8E-06 45.7 7.8 88 146-233 1-118 (312)
406 COG2910 Putative NADH-flavin r 93.3 0.51 1.1E-05 40.8 8.1 61 145-205 1-72 (211)
407 PRK08192 aspartate carbamoyltr 93.2 0.59 1.3E-05 44.4 9.2 62 141-202 156-233 (338)
408 PRK01438 murD UDP-N-acetylmura 93.1 0.15 3.3E-06 50.5 5.4 110 139-249 11-148 (480)
409 PLN03209 translocon at the inn 93.1 0.14 3.1E-06 51.7 5.2 37 142-178 78-115 (576)
410 PRK07200 aspartate/ornithine c 93.1 0.55 1.2E-05 45.5 9.0 63 141-203 184-270 (395)
411 KOG0399 Glutamate synthase [Am 93.1 0.35 7.5E-06 52.1 7.9 66 141-206 1782-1881(2142)
412 PRK10537 voltage-gated potassi 92.9 0.32 7E-06 47.1 7.1 83 143-227 239-332 (393)
413 COG1063 Tdh Threonine dehydrog 92.9 0.29 6.3E-06 46.5 6.8 85 145-234 170-272 (350)
414 KOG2305 3-hydroxyacyl-CoA dehy 92.8 0.36 7.8E-06 43.1 6.6 140 145-295 4-173 (313)
415 PRK10206 putative oxidoreducta 92.8 0.22 4.7E-06 47.3 5.8 63 146-208 3-77 (344)
416 PRK08265 short chain dehydroge 92.8 0.47 1E-05 42.7 7.8 38 141-178 3-41 (261)
417 PLN02214 cinnamoyl-CoA reducta 92.8 0.33 7.2E-06 45.8 7.1 64 141-204 7-90 (342)
418 PRK15057 UDP-glucose 6-dehydro 92.7 0.35 7.5E-06 46.8 7.1 63 142-204 294-368 (388)
419 PRK15181 Vi polysaccharide bio 92.6 0.26 5.7E-06 46.5 6.1 36 142-177 13-49 (348)
420 PRK08328 hypothetical protein; 92.6 0.16 3.5E-06 45.5 4.3 37 140-176 23-60 (231)
421 PRK14852 hypothetical protein; 92.6 1.1 2.4E-05 48.1 11.0 155 141-307 329-545 (989)
422 PRK08374 homoserine dehydrogen 92.6 0.97 2.1E-05 42.9 9.8 114 145-263 3-156 (336)
423 PLN02695 GDP-D-mannose-3',5'-e 92.5 0.28 6.1E-06 46.9 6.2 61 143-203 20-93 (370)
424 TIGR01851 argC_other N-acetyl- 92.5 0.59 1.3E-05 43.8 8.1 75 146-231 3-80 (310)
425 PRK12937 short chain dehydroge 92.5 0.51 1.1E-05 41.5 7.5 35 142-176 3-38 (245)
426 PRK08628 short chain dehydroge 92.5 0.32 7E-06 43.4 6.3 38 141-178 4-42 (258)
427 TIGR02822 adh_fam_2 zinc-bindi 92.5 0.46 9.9E-06 44.6 7.4 85 143-232 165-255 (329)
428 PRK07523 gluconate 5-dehydroge 92.4 0.34 7.4E-06 43.2 6.3 38 141-178 7-45 (255)
429 PRK06398 aldose dehydrogenase; 92.4 0.57 1.2E-05 42.1 7.8 38 141-178 3-41 (258)
430 PRK07370 enoyl-(acyl carrier p 92.4 0.3 6.5E-06 44.0 5.9 36 141-176 3-41 (258)
431 PLN02657 3,8-divinyl protochlo 92.4 0.29 6.2E-06 47.3 6.1 40 139-178 55-95 (390)
432 cd01491 Ube1_repeat1 Ubiquitin 92.4 0.79 1.7E-05 42.5 8.7 38 140-177 15-53 (286)
433 cd01336 MDH_cytoplasmic_cytoso 92.4 0.37 8E-06 45.5 6.7 59 146-204 4-87 (325)
434 KOG1207 Diacetyl reductase/L-x 92.4 1.2 2.6E-05 38.4 8.9 39 140-178 3-42 (245)
435 PLN02989 cinnamyl-alcohol dehy 92.3 0.47 1E-05 44.0 7.3 62 143-204 4-86 (325)
436 PRK06079 enoyl-(acyl carrier p 92.2 0.31 6.7E-06 43.7 5.8 36 141-176 4-42 (252)
437 PRK14804 ornithine carbamoyltr 92.2 0.43 9.2E-06 44.8 6.8 63 141-203 150-226 (311)
438 PRK08040 putative semialdehyde 92.1 0.48 1E-05 44.9 7.1 83 143-231 3-97 (336)
439 PRK14851 hypothetical protein; 92.1 0.37 8E-06 50.0 6.8 35 140-174 39-74 (679)
440 COG0039 Mdh Malate/lactate deh 92.1 0.38 8.2E-06 45.1 6.2 63 145-207 1-83 (313)
441 PRK06728 aspartate-semialdehyd 92.1 0.76 1.7E-05 43.8 8.4 82 143-231 4-99 (347)
442 PRK07231 fabG 3-ketoacyl-(acyl 92.1 0.37 8.1E-06 42.6 6.1 38 141-178 2-40 (251)
443 cd01492 Aos1_SUMO Ubiquitin ac 92.1 0.18 3.9E-06 44.1 3.9 37 140-176 17-54 (197)
444 PLN02178 cinnamyl-alcohol dehy 92.0 0.67 1.5E-05 44.4 8.1 35 143-177 178-212 (375)
445 cd01485 E1-1_like Ubiquitin ac 92.0 0.2 4.4E-06 43.8 4.1 37 140-176 15-52 (198)
446 KOG0022 Alcohol dehydrogenase, 92.0 0.18 4E-06 47.0 3.9 37 143-179 192-229 (375)
447 PRK08324 short chain dehydroge 91.9 0.3 6.5E-06 50.7 6.0 39 140-178 418-457 (681)
448 PRK03806 murD UDP-N-acetylmura 91.9 0.25 5.4E-06 48.3 5.1 107 142-249 4-131 (438)
449 PRK06523 short chain dehydroge 91.9 0.69 1.5E-05 41.3 7.6 39 140-178 5-44 (260)
450 PRK15076 alpha-galactosidase; 91.9 0.16 3.4E-06 49.9 3.6 109 145-254 2-169 (431)
451 TIGR03466 HpnA hopanoid-associ 91.8 0.32 6.9E-06 44.9 5.5 60 145-204 1-73 (328)
452 TIGR01296 asd_B aspartate-semi 91.8 0.51 1.1E-05 44.8 6.9 79 146-231 1-92 (339)
453 cd05283 CAD1 Cinnamyl alcohol 91.8 0.66 1.4E-05 43.3 7.6 85 143-232 169-264 (337)
454 TIGR01757 Malate-DH_plant mala 91.7 1 2.2E-05 43.5 9.0 96 145-242 45-179 (387)
455 COG0078 ArgF Ornithine carbamo 91.7 1.5 3.3E-05 40.7 9.6 130 77-231 107-270 (310)
456 PRK08664 aspartate-semialdehyd 91.6 0.74 1.6E-05 43.8 7.9 80 145-231 4-107 (349)
457 PRK13376 pyrB bifunctional asp 91.6 1 2.2E-05 45.2 9.0 91 141-231 171-293 (525)
458 PRK05865 hypothetical protein; 91.6 0.86 1.9E-05 48.5 8.9 90 145-234 1-105 (854)
459 TIGR01532 E4PD_g-proteo D-eryt 91.6 0.45 9.6E-06 45.0 6.2 29 146-174 1-33 (325)
460 PLN02896 cinnamyl-alcohol dehy 91.5 0.39 8.4E-06 45.4 5.8 39 139-177 5-44 (353)
461 cd08239 THR_DH_like L-threonin 91.5 0.77 1.7E-05 42.8 7.8 85 143-232 163-263 (339)
462 PRK06197 short chain dehydroge 91.4 0.48 1E-05 43.7 6.2 49 127-178 2-51 (306)
463 PRK07825 short chain dehydroge 91.4 0.52 1.1E-05 42.5 6.4 38 141-178 2-40 (273)
464 TIGR01214 rmlD dTDP-4-dehydror 91.4 0.36 7.9E-06 43.8 5.3 56 146-204 1-59 (287)
465 PLN02427 UDP-apiose/xylose syn 91.4 0.45 9.9E-06 45.5 6.2 65 139-203 9-94 (386)
466 PRK06196 oxidoreductase; Provi 91.3 0.59 1.3E-05 43.4 6.7 38 141-178 23-61 (315)
467 PRK04663 murD UDP-N-acetylmura 91.3 1.3 2.8E-05 43.4 9.4 107 142-249 4-134 (438)
468 PRK07889 enoyl-(acyl carrier p 91.3 0.4 8.7E-06 43.1 5.4 37 141-177 4-43 (256)
469 PRK07424 bifunctional sterol d 91.2 0.33 7.3E-06 47.2 5.1 63 141-203 175-253 (406)
470 PRK08264 short chain dehydroge 91.2 0.51 1.1E-05 41.5 6.0 39 141-179 3-43 (238)
471 PRK04523 N-acetylornithine car 91.2 1.6 3.5E-05 41.4 9.5 62 142-203 166-252 (335)
472 PRK08589 short chain dehydroge 91.1 0.45 9.7E-06 43.1 5.6 36 141-176 3-39 (272)
473 PRK12367 short chain dehydroge 91.1 0.39 8.5E-06 43.2 5.1 65 140-204 10-88 (245)
474 PRK07533 enoyl-(acyl carrier p 91.1 1 2.2E-05 40.5 7.8 37 141-177 7-46 (258)
475 cd08255 2-desacetyl-2-hydroxye 91.0 0.94 2E-05 40.8 7.6 87 143-234 97-193 (277)
476 PRK06153 hypothetical protein; 91.0 0.26 5.6E-06 47.5 4.0 35 141-175 173-208 (393)
477 TIGR01142 purT phosphoribosylg 91.0 0.4 8.7E-06 45.8 5.4 57 146-202 1-69 (380)
478 cd00755 YgdL_like Family of ac 90.9 0.32 7E-06 43.6 4.3 36 141-176 8-44 (231)
479 PRK05717 oxidoreductase; Valid 90.8 0.61 1.3E-05 41.6 6.2 37 141-177 7-44 (255)
480 cd08245 CAD Cinnamyl alcohol d 90.8 1 2.3E-05 41.6 7.9 85 143-232 162-257 (330)
481 TIGR03325 BphB_TodD cis-2,3-di 90.7 0.91 2E-05 40.7 7.2 37 142-178 3-40 (262)
482 TIGR01771 L-LDH-NAD L-lactate 90.5 0.35 7.6E-06 45.1 4.4 83 149-231 1-113 (299)
483 PRK08594 enoyl-(acyl carrier p 90.4 1.3 2.8E-05 39.8 8.0 36 141-176 4-42 (257)
484 PRK06171 sorbitol-6-phosphate 90.3 1.3 2.8E-05 39.7 7.9 39 141-179 6-45 (266)
485 PRK05866 short chain dehydroge 90.3 0.51 1.1E-05 43.5 5.3 40 139-178 35-75 (293)
486 PRK08862 short chain dehydroge 90.3 0.56 1.2E-05 41.6 5.3 38 141-178 2-40 (227)
487 PRK06128 oxidoreductase; Provi 90.3 0.44 9.6E-06 43.9 4.8 36 141-176 52-88 (300)
488 TIGR03589 PseB UDP-N-acetylglu 90.2 0.58 1.3E-05 43.8 5.7 62 142-203 2-82 (324)
489 PLN02514 cinnamyl-alcohol dehy 90.2 0.7 1.5E-05 43.8 6.3 85 143-232 180-276 (357)
490 PRK06200 2,3-dihydroxy-2,3-dih 90.2 0.77 1.7E-05 41.1 6.3 37 142-178 4-41 (263)
491 PRK08217 fabG 3-ketoacyl-(acyl 90.2 0.47 1E-05 41.9 4.8 38 141-178 2-40 (253)
492 PRK12828 short chain dehydroge 90.1 0.51 1.1E-05 41.2 4.9 38 141-178 4-42 (239)
493 PRK15116 sulfur acceptor prote 90.1 0.43 9.2E-06 43.8 4.5 37 140-176 26-63 (268)
494 PRK12771 putative glutamate sy 90.1 0.48 1E-05 48.1 5.3 36 141-176 134-169 (564)
495 PLN02206 UDP-glucuronate decar 90.1 0.88 1.9E-05 44.8 7.0 41 136-176 111-152 (442)
496 PRK07984 enoyl-(acyl carrier p 90.1 0.68 1.5E-05 42.0 5.8 35 142-176 4-41 (262)
497 PRK14573 bifunctional D-alanyl 90.0 1.4 3E-05 46.8 8.9 105 145-249 5-130 (809)
498 KOG2741 Dimeric dihydrodiol de 90.0 2.2 4.7E-05 40.4 9.1 110 145-260 7-132 (351)
499 KOG0089 Methylenetetrahydrofol 90.0 0.56 1.2E-05 42.8 5.0 95 138-239 160-256 (309)
500 PLN02383 aspartate semialdehyd 90.0 1.4 3.1E-05 41.9 8.1 83 143-231 6-100 (344)
No 1
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=2e-72 Score=526.08 Aligned_cols=309 Identities=34% Similarity=0.536 Sum_probs=277.0
Q ss_pred ceEEEEeCCCChhHHHHHHhcCcEEEeecC-CChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcC
Q 021388 3 SIGVLMACPMNTYLEQELERRFNLFKFWTV-SDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKV 81 (313)
Q Consensus 3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i 81 (313)
+++|++++++.+...+.|++.+++..+.+. +.+.+++.+.++++|+++++ ..++++++++++|+||||++.|+|+|+|
T Consensus 2 ~~~vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~-~~~~~~~~l~~~p~Lk~I~~~g~G~d~i 80 (323)
T PRK15409 2 KPSVILYKALPDDLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGS-GEKVDAALLEKMPKLRAASTISVGYDNF 80 (323)
T ss_pred CceEEEeCCCCHHHHHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEc-CCCCCHHHHhhCCCCeEEEECceecccc
Confidence 488999999888888888877765443221 22344556778899999875 4579999999999999999999999999
Q ss_pred ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCC--CcccccccCCCEEEEEcCChHHHHH
Q 021388 82 DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG--DYKLTTKFTGKTVGIIGLGRIGMAV 159 (313)
Q Consensus 82 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~--~~~~~~~l~g~~igiiG~G~iG~~i 159 (313)
|+++|.++||+|+|+||+++++||||++++||+++|++..+++.+++|.|... ....+.+|+|||+||||+|+||+.+
T Consensus 81 d~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~v 160 (323)
T PRK15409 81 DVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMAL 160 (323)
T ss_pred cHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999732 1124678999999999999999999
Q ss_pred HHHHH-hCCCCEEEecCCCCCcc----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCc
Q 021388 160 AKRAE-AFSCPINYYSRTEKPNL----KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGP 234 (313)
Q Consensus 160 A~~l~-~~G~~V~~~~~~~~~~~----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~ 234 (313)
|++++ +|||+|++||++..... +. ...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+
T Consensus 161 a~~l~~~fgm~V~~~~~~~~~~~~~~~~~-~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 239 (323)
T PRK15409 161 AQRAHFGFNMPILYNARRHHKEAEERFNA-RYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGP 239 (323)
T ss_pred HHHHHhcCCCEEEEECCCCchhhHHhcCc-EecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCcc
Confidence 99998 99999999998754321 22 24589999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388 235 HVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV 313 (313)
Q Consensus 235 ~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 313 (313)
+||++||++||++|++.||+||||++||++.+ |||++|||++|||+||.|.+++.++...+++||.+|++|+++.+.||
T Consensus 240 vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn 319 (323)
T PRK15409 240 VVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVEKNCVN 319 (323)
T ss_pred ccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence 99999999999999999999999999998754 89999999999999999999999999999999999999999988886
No 2
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-72 Score=523.96 Aligned_cols=307 Identities=34% Similarity=0.508 Sum_probs=276.4
Q ss_pred CCceEEEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCc
Q 021388 1 MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDK 80 (313)
Q Consensus 1 m~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~ 80 (313)
+.+++++.++++.+...+.+...............++++.+.++++|++++ +.+++++++++.+|+||||++.++|+||
T Consensus 1 ~~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~ 79 (324)
T COG0111 1 KMMIKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDN 79 (324)
T ss_pred CCcceeeccCccCHHHHHHHHhccccccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccc
Confidence 357889999999998888887662222222222344446677899999998 7889999999999999999999999999
Q ss_pred CChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHH
Q 021388 81 VDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVA 160 (313)
Q Consensus 81 id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA 160 (313)
+|++++.++||.|+|+|+.|+.+||||+++++|++.|+++.++..++.|.|.+..+ .+.+|+|||+||||+|+||+.+|
T Consensus 80 id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~-~g~el~gkTvGIiG~G~IG~~va 158 (324)
T COG0111 80 IDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAF-RGTELAGKTVGIIGLGRIGRAVA 158 (324)
T ss_pred cCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCcccccc-ccccccCCEEEEECCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987333 46799999999999999999999
Q ss_pred HHHHhCCCCEEEecCCCCCc-c---ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccc
Q 021388 161 KRAEAFSCPINYYSRTEKPN-L---KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV 236 (313)
Q Consensus 161 ~~l~~~G~~V~~~~~~~~~~-~---~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~v 236 (313)
+++++|||+|++||+..... . +.....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++|
T Consensus 159 ~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vV 238 (324)
T COG0111 159 KRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVV 238 (324)
T ss_pred HHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCccee
Confidence 99999999999999954432 2 2344578999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021388 237 DERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLL 309 (313)
Q Consensus 237 d~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~ 309 (313)
|++||++||++|+|+||+||||++||++++ |||++|||++|||+|+.|.++.+++...+++|+.+|++|+++.
T Consensus 239 de~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~ 312 (324)
T COG0111 239 DEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVV 312 (324)
T ss_pred cHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999886 9999999999999999999999999999999999999999853
No 3
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=6.5e-71 Score=513.91 Aligned_cols=310 Identities=41% Similarity=0.645 Sum_probs=280.2
Q ss_pred ceEEEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCC
Q 021388 3 SIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVD 82 (313)
Q Consensus 3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id 82 (313)
|+.++.+..+.+...+.+.+.|++..+.+....+.++.+..+++|++++....++++++++++|+||+|++.|+||||||
T Consensus 2 k~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vD 81 (324)
T COG1052 2 KIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVD 81 (324)
T ss_pred CcEEEecCcCCHHHHHHhhccEEEEEeccCCccchHHHHHhcCCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCccc
Confidence 67788888888888889998888766653312111556778999999998788999999999999999999999999999
Q ss_pred hhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC---cccccccCCCEEEEEcCChHHHHH
Q 021388 83 MVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD---YKLTTKFTGKTVGIIGLGRIGMAV 159 (313)
Q Consensus 83 ~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~---~~~~~~l~g~~igiiG~G~iG~~i 159 (313)
+++|+++||.|+|+|++++++||||++++||++.|++.++++.+++|.|.... ...+.+++|||+||||+|+||+++
T Consensus 82 l~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~av 161 (324)
T COG1052 82 LEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAV 161 (324)
T ss_pred HHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999998542 245778999999999999999999
Q ss_pred HHHHHhCCCCEEEecCCCCC----ccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcc
Q 021388 160 AKRAEAFSCPINYYSRTEKP----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH 235 (313)
Q Consensus 160 A~~l~~~G~~V~~~~~~~~~----~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~ 235 (313)
|+++++|||+|.+|||++.+ ..++.+. +++|++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++
T Consensus 162 A~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~-~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~ 240 (324)
T COG1052 162 ARRLKGFGMKVLYYDRSPNPEAEKELGARYV-DLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGL 240 (324)
T ss_pred HHHHhcCCCEEEEECCCCChHHHhhcCceec-cHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccc
Confidence 99999999999999998752 2223334 499999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhCCeeEEEecCCCCCCCC-CCcccCCCc---eEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 021388 236 VDERELVSALVEGRLGGAGLDVFENEPHV-PEELFGLEN---VVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTP 311 (313)
Q Consensus 236 vd~~al~~al~~~~l~ga~lDV~~~Ep~~-~~~L~~~pn---v~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~ 311 (313)
||++||++||++|++.||++|||+.||.+ +++|++++| |++|||+|+.|.+++.+|.+.+++|+.+|++|+.+.++
T Consensus 241 VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~~ 320 (324)
T COG1052 241 VDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPNE 320 (324)
T ss_pred cCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999986 457777666 99999999999999999999999999999999999998
Q ss_pred CC
Q 021388 312 VV 313 (313)
Q Consensus 312 v~ 313 (313)
||
T Consensus 321 v~ 322 (324)
T COG1052 321 VN 322 (324)
T ss_pred CC
Confidence 86
No 4
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=2.5e-70 Score=514.66 Aligned_cols=311 Identities=42% Similarity=0.628 Sum_probs=278.0
Q ss_pred ceEEEEeCCCChhHHHHHHhcCcEEEeec-CCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcC
Q 021388 3 SIGVLMACPMNTYLEQELERRFNLFKFWT-VSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKV 81 (313)
Q Consensus 3 ~~~vl~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i 81 (313)
|++|++++++.+...+.|++.+++..+.+ .+.+++++.+.++++|+++++...++++++++++|+||||++.|+|+|++
T Consensus 2 ~~kil~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~i 81 (333)
T PRK13243 2 KPKVFITREIPENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAAPRLRIVANYAVGYDNI 81 (333)
T ss_pred CceEEEECCCCHHHHHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhCCCCeEEEecCcccccc
Confidence 57889998888877788887765544322 12244555677889999998766689999999999999999999999999
Q ss_pred ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC------cccccccCCCEEEEEcCChH
Q 021388 82 DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD------YKLTTKFTGKTVGIIGLGRI 155 (313)
Q Consensus 82 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~------~~~~~~l~g~~igiiG~G~i 155 (313)
|++++.++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|.+.. ...+.+|.||+|||||+|.|
T Consensus 82 d~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~I 161 (333)
T PRK13243 82 DVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRI 161 (333)
T ss_pred CHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCHH
Confidence 999999999999999999999999999999999999999999999999997421 11467899999999999999
Q ss_pred HHHHHHHHHhCCCCEEEecCCCCCccc---cccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388 156 GMAVAKRAEAFSCPINYYSRTEKPNLK---YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 156 G~~iA~~l~~~G~~V~~~~~~~~~~~~---~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~r 232 (313)
|+.+|++|++|||+|++|||+...... .....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+||
T Consensus 162 G~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aR 241 (333)
T PRK13243 162 GQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTAR 241 (333)
T ss_pred HHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcC
Confidence 999999999999999999997653211 11245899999999999999999999999999999999999999999999
Q ss_pred CccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 021388 233 GPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312 (313)
Q Consensus 233 g~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v 312 (313)
|++||+++|+++|++|+|.||+||||+.||++.+|||++|||++|||+||+|.++..++.+.+++||.+|++|+++.+.|
T Consensus 242 g~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v 321 (333)
T PRK13243 242 GKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVPPTLV 321 (333)
T ss_pred chhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence 99999999999999999999999999999998679999999999999999999999999999999999999999998887
Q ss_pred C
Q 021388 313 V 313 (313)
Q Consensus 313 ~ 313 (313)
|
T Consensus 322 ~ 322 (333)
T PRK13243 322 N 322 (333)
T ss_pred C
Confidence 6
No 5
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=4.3e-70 Score=508.68 Aligned_cols=299 Identities=29% Similarity=0.462 Sum_probs=262.6
Q ss_pred EEEEeCC--CChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCC
Q 021388 5 GVLMACP--MNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVD 82 (313)
Q Consensus 5 ~vl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id 82 (313)
||++.++ +.+...+.|++.+++..+ ... +++++.+.++++|+++++ ..++++++++++|+||||++.|+|+|++|
T Consensus 2 ki~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id 78 (311)
T PRK08410 2 KIVILDAKTLGDKDLSVFEEFGDFQIY-PTT-SPEEVIERIKDANIIITN-KVVIDKEVLSQLPNLKLICITATGTNNVD 78 (311)
T ss_pred eEEEEecCCCChhhHHHHhhCceEEEe-CCC-CHHHHHHHhCCCCEEEEC-CCCCCHHHHhhCCCCeEEEEccccccccc
Confidence 4666665 555666777776654443 222 334456678899999885 56799999999999999999999999999
Q ss_pred hhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCc-----ccccccCCCEEEEEcCChHHH
Q 021388 83 MVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDY-----KLTTKFTGKTVGIIGLGRIGM 157 (313)
Q Consensus 83 ~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-----~~~~~l~g~~igiiG~G~iG~ 157 (313)
+++++++||.|+|+||+++.+||||++++||+++|++..+++.+++|.|..... ..+.+|+|||+||||+|+||+
T Consensus 79 ~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~ 158 (311)
T PRK08410 79 IEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGK 158 (311)
T ss_pred HHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHH
Confidence 999999999999999999999999999999999999999999999999974221 124689999999999999999
Q ss_pred HHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcccc
Q 021388 158 AVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVD 237 (313)
Q Consensus 158 ~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd 237 (313)
.+|+++++|||+|++|||+...........++++++++||+|++|+|+|++|+++|+++.|++||||++|||+|||++||
T Consensus 159 ~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVD 238 (311)
T PRK08410 159 RVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVN 238 (311)
T ss_pred HHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccC
Confidence 99999999999999999975432221234589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCC---CceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021388 238 ERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGL---ENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP 307 (313)
Q Consensus 238 ~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~---pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~ 307 (313)
++||++||++|+|+ |+||||++||++++ |||++ |||++|||+||+|.++..++...+++||.+|++|+.
T Consensus 239 e~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~~ 311 (311)
T PRK08410 239 EKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGGK 311 (311)
T ss_pred HHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999 99999999998765 89986 899999999999999999999999999999999864
No 6
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-69 Score=521.79 Aligned_cols=311 Identities=28% Similarity=0.422 Sum_probs=278.9
Q ss_pred CCceEEEEeCCCChhHHHHHHhc-C-cEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCC
Q 021388 1 MESIGVLMACPMNTYLEQELERR-F-NLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGL 78 (313)
Q Consensus 1 m~~~~vl~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~ 78 (313)
|++++|++++++.+...+.|.+. + ++..+ ....+++++.+.++++|++++++..++++++++++|+||||++.|+|+
T Consensus 8 ~~~~~ili~~~~~~~~~~~l~~~~~~~v~~~-~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~ 86 (409)
T PRK11790 8 KDKIKFLLLEGVHQSAVEVLRAAGYTNIEYH-KGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAAEKLVAIGCFCIGT 86 (409)
T ss_pred CCCeEEEEECCCCHHHHHHHHhcCCceEEEC-CCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhCCCCeEEEECceec
Confidence 45678999988888888888775 4 33333 222344555677889999887666789999999999999999999999
Q ss_pred CcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHH
Q 021388 79 DKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMA 158 (313)
Q Consensus 79 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~ 158 (313)
||+|+++|+++||.|+|+||+++.+||||++++||++.|++.++++.+++|.|.+.. ..+.+|.|||+||||+|+||+.
T Consensus 87 d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~L~gktvGIiG~G~IG~~ 165 (409)
T PRK11790 87 NQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA-AGSFEVRGKTLGIVGYGHIGTQ 165 (409)
T ss_pred ccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc-cCcccCCCCEEEEECCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999998533 2467899999999999999999
Q ss_pred HHHHHHhCCCCEEEecCCCCCcc-ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcccc
Q 021388 159 VAKRAEAFSCPINYYSRTEKPNL-KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVD 237 (313)
Q Consensus 159 iA~~l~~~G~~V~~~~~~~~~~~-~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd 237 (313)
+|+++++|||+|++||++..... +.....++++++++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||
T Consensus 166 vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vd 245 (409)
T PRK11790 166 LSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVD 245 (409)
T ss_pred HHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccC
Confidence 99999999999999998754332 23345689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeeEEEecCCCCCCCCC-----CcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 021388 238 ERELVSALVEGRLGGAGLDVFENEPHVP-----EELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312 (313)
Q Consensus 238 ~~al~~al~~~~l~ga~lDV~~~Ep~~~-----~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v 312 (313)
++||+++|++|++.||++|||++||++. +|||++|||++|||+||+|.++++++...+++|+.+|++|+++.+.|
T Consensus 246 e~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~v 325 (409)
T PRK11790 246 IDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTLSAV 325 (409)
T ss_pred HHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcCcce
Confidence 9999999999999999999999999875 48999999999999999999999999999999999999999998887
Q ss_pred C
Q 021388 313 V 313 (313)
Q Consensus 313 ~ 313 (313)
|
T Consensus 326 n 326 (409)
T PRK11790 326 N 326 (409)
T ss_pred e
Confidence 6
No 7
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.9e-69 Score=504.30 Aligned_cols=303 Identities=29% Similarity=0.481 Sum_probs=263.3
Q ss_pred EEEeCC--C--ChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcC
Q 021388 6 VLMACP--M--NTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKV 81 (313)
Q Consensus 6 vl~~~~--~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i 81 (313)
|++.+. + .+...+.+++.++.+.+... ..++++.+.+.++|+++++ ..++++++++++|+||||++.|+|+|++
T Consensus 3 i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~i 80 (317)
T PRK06487 3 AVFLDHDSLDLGDLDLSPLEQAFDELQLHDA-TTPEQVAERLRGAQVAISN-KVALDAAALAAAPQLKLILVAATGTNNV 80 (317)
T ss_pred EEEEccccCCccccchhHHHhhCCeEEEecC-CCHHHHHHHhCCCeEEEEe-CCCCCHHHHhhCCCCeEEEEcCcccccc
Confidence 666554 2 23445667666543333332 2344556778899998875 4679999999999999999999999999
Q ss_pred ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCc-----ccccccCCCEEEEEcCChHH
Q 021388 82 DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDY-----KLTTKFTGKTVGIIGLGRIG 156 (313)
Q Consensus 82 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-----~~~~~l~g~~igiiG~G~iG 156 (313)
|++++.++||.|+|+||+++.+||||++++||+++|++.++++.+++|.|.+... ..+.+|.||++||||+|+||
T Consensus 81 d~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG 160 (317)
T PRK06487 81 DLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELG 160 (317)
T ss_pred CHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHH
Confidence 9999999999999999999999999999999999999999999999999974321 12468999999999999999
Q ss_pred HHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccc
Q 021388 157 MAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV 236 (313)
Q Consensus 157 ~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~v 236 (313)
+.+|+++++|||+|++||++.... . ....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++|
T Consensus 161 ~~vA~~l~~fgm~V~~~~~~~~~~-~-~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vV 238 (317)
T PRK06487 161 GAVARLAEAFGMRVLIGQLPGRPA-R-PDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLV 238 (317)
T ss_pred HHHHHHHhhCCCEEEEECCCCCcc-c-ccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCcccc
Confidence 999999999999999999864322 1 22458999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccC--CCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388 237 DERELVSALVEGRLGGAGLDVFENEPHVPE-ELFG--LENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV 313 (313)
Q Consensus 237 d~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~--~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 313 (313)
|++||++||++|++.||+||||++||++.+ |||+ +|||++|||+||+|.++++++...+++||.+|++|+++ +.||
T Consensus 239 de~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~-~~v~ 317 (317)
T PRK06487 239 DEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL-RVVS 317 (317)
T ss_pred CHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC-cCCC
Confidence 999999999999999999999999998874 8995 89999999999999999999999999999999999865 5554
No 8
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=3e-68 Score=507.14 Aligned_cols=311 Identities=30% Similarity=0.421 Sum_probs=272.9
Q ss_pred ceEEEEeCCCChh-HHHHHHhc-CcEEEee--cCCChHHHHHhcc-CCceEEEEeCCCCCCHHHHhhCCC--ccEEEEcC
Q 021388 3 SIGVLMACPMNTY-LEQELERR-FNLFKFW--TVSDKTQFLKAQQ-NNIRAVVGNATAGADAELIDALPK--LEIVSSFS 75 (313)
Q Consensus 3 ~~~vl~~~~~~~~-~~~~l~~~-~~~~~~~--~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~ 75 (313)
|++|+++.++.+. ..+.|.+. +++..+. +...+++++.+.+ +++|+++++..+++++++++++|+ ||+|++.+
T Consensus 15 ~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I~~~~ 94 (386)
T PLN02306 15 KYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMA 94 (386)
T ss_pred CceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEEEECC
Confidence 6789999988764 56777765 4554322 1123445555665 579999987767899999999996 69999999
Q ss_pred cCCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCC--CcccccccCCCEEEEEcCC
Q 021388 76 VGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKG--DYKLTTKFTGKTVGIIGLG 153 (313)
Q Consensus 76 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~--~~~~~~~l~g~~igiiG~G 153 (313)
+|+||+|++++.++||.|+|+||+++.+||||++++||+++|++.++++.+++|.|... ....+.++.|+++||||+|
T Consensus 95 ~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G 174 (386)
T PLN02306 95 VGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAG 174 (386)
T ss_pred cccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999988521 1124678999999999999
Q ss_pred hHHHHHHHHHH-hCCCCEEEecCCCCCcc-------c------------cccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388 154 RIGMAVAKRAE-AFSCPINYYSRTEKPNL-------K------------YKYYPSVVELASNCHILVVACPLTEETRHII 213 (313)
Q Consensus 154 ~iG~~iA~~l~-~~G~~V~~~~~~~~~~~-------~------------~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li 213 (313)
.||+.+|++++ +|||+|++||++..... + .....++++++++||+|++|+|+|++|+++|
T Consensus 175 ~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~li 254 (386)
T PLN02306 175 RIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLI 254 (386)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhc
Confidence 99999999985 99999999998764210 0 1123589999999999999999999999999
Q ss_pred CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHH
Q 021388 214 NREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMAD 293 (313)
Q Consensus 214 ~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~ 293 (313)
+++.|++||+|++|||+|||++||++||++||++|++.||+||||++||+++++||++|||++|||+||.|.++++++.+
T Consensus 255 n~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPHiag~T~e~~~~~~~ 334 (386)
T PLN02306 255 NKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPHIASASKWTREGMAT 334 (386)
T ss_pred CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCccccCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998777899999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCC
Q 021388 294 LVLGNLEAHFLNKPLLTPVV 313 (313)
Q Consensus 294 ~~~~nl~~~~~g~~~~~~v~ 313 (313)
.+++||.+|++|+++.+.||
T Consensus 335 ~~~~ni~~~~~g~~~~~~~~ 354 (386)
T PLN02306 335 LAALNVLGKLKGYPVWGDPN 354 (386)
T ss_pred HHHHHHHHHHcCCCCccccc
Confidence 99999999999999998886
No 9
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-68 Score=495.91 Aligned_cols=270 Identities=28% Similarity=0.479 Sum_probs=245.7
Q ss_pred HHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHH
Q 021388 36 TQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAV 115 (313)
Q Consensus 36 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~ 115 (313)
++++.+.++++|+++++ ..++++++++++|+||||++.++|+|++|++++.++||.|+|+||+++.+||||++++||++
T Consensus 35 ~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~ 113 (314)
T PRK06932 35 AEQTIERAKDADIVITS-KVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFAL 113 (314)
T ss_pred hHHHHHHhCCCcEEEEe-CCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHH
Confidence 34456778899998874 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHhcCCCCCCC-c----ccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHH
Q 021388 116 LRRLCESDRYVRSGKWKKGD-Y----KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVV 190 (313)
Q Consensus 116 ~r~~~~~~~~~~~~~w~~~~-~----~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~ 190 (313)
+|++..+++.+++|.|.... + ..+.+|.||++||||+|.||+.+|+++++|||+|++||++...... ....+++
T Consensus 114 ~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~-~~~~~l~ 192 (314)
T PRK06932 114 KHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASVCR-EGYTPFE 192 (314)
T ss_pred HhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccccc-cccCCHH
Confidence 99999999999999997421 0 1246899999999999999999999999999999999986432211 1245899
Q ss_pred HHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC-ccc
Q 021388 191 ELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELF 269 (313)
Q Consensus 191 e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~ 269 (313)
+++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++.+ |||
T Consensus 193 ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~ 272 (314)
T PRK06932 193 EVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLI 272 (314)
T ss_pred HHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998764 888
Q ss_pred ----CCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021388 270 ----GLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP 307 (313)
Q Consensus 270 ----~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~ 307 (313)
++|||++|||+||+|.++.+++.+.+++||.+|++|+.
T Consensus 273 ~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 273 QAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred HhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 59999999999999999999999999999999998863
No 10
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=2.7e-67 Score=496.21 Aligned_cols=305 Identities=27% Similarity=0.405 Sum_probs=266.6
Q ss_pred CCceEEEEeCCCChhH---HHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcC
Q 021388 1 MESIGVLMACPMNTYL---EQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVG 77 (313)
Q Consensus 1 m~~~~vl~~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G 77 (313)
|.|++||++.+..+.. .+++.++++...+. .. +.+++.+.++++|+++++ ..++++++++.+|+||||++.++|
T Consensus 16 ~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G 92 (347)
T PLN02928 16 MRPTRVLFCGPEFPASYSYTREYLQKYPFIQVD-AV-AREDVPDVIANYDICVPK-MMRLDADIIARASQMKLIMQFGVG 92 (347)
T ss_pred CCCCEEEEECCCchhHHHHHHHHhhcCCeeEec-CC-CHHHHHHHhcCCcEEEEC-CCCCCHHHHhcCCCceEEEECCcc
Confidence 6789999998766642 22333444443332 22 233456678899998874 457999999999999999999999
Q ss_pred CCcCChhhhhhcCcEEEcCCCC---ChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCCh
Q 021388 78 LDKVDMVKCKEKGVRVTNTPDV---LTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGR 154 (313)
Q Consensus 78 ~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~ 154 (313)
+|++|++++.++||.|+|+|++ ++.+||||+++++|+++|++..+++.++++.|.. +.+.++.||++||||+|.
T Consensus 93 ~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~---~~~~~l~gktvGIiG~G~ 169 (347)
T PLN02928 93 LEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE---PIGDTLFGKTVFILGYGA 169 (347)
T ss_pred cCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc---ccccCCCCCEEEEECCCH
Confidence 9999999999999999999985 7899999999999999999999999999999964 246789999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEecCCCCCccc----------------cccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388 155 IGMAVAKRAEAFSCPINYYSRTEKPNLK----------------YKYYPSVVELASNCHILVVACPLTEETRHIINREVI 218 (313)
Q Consensus 155 iG~~iA~~l~~~G~~V~~~~~~~~~~~~----------------~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l 218 (313)
||+.+|++|++|||+|++|||+...... .....++++++++||+|++|+|+|++|+++|+++.|
T Consensus 170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l 249 (347)
T PLN02928 170 IGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFL 249 (347)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHH
Confidence 9999999999999999999987432110 013468999999999999999999999999999999
Q ss_pred hccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHH
Q 021388 219 DALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLG 297 (313)
Q Consensus 219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~ 297 (313)
+.||+|++|||+|||++||++||++||++|++.||+||||++||++++ |||++|||++|||+||+|.++++++.+.+++
T Consensus 250 ~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~~ 329 (347)
T PLN02928 250 SSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVGD 329 (347)
T ss_pred hcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998764 8999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCC
Q 021388 298 NLEAHFLNKPLLTP 311 (313)
Q Consensus 298 nl~~~~~g~~~~~~ 311 (313)
||.+|++|+++.+.
T Consensus 330 nl~~~~~g~~~~~~ 343 (347)
T PLN02928 330 AALQLHAGRPLTGI 343 (347)
T ss_pred HHHHHHCCCCCCce
Confidence 99999999988653
No 11
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=2.2e-67 Score=500.21 Aligned_cols=295 Identities=27% Similarity=0.438 Sum_probs=263.2
Q ss_pred HHHHHhc-CcEEEeecCCChHHHHHhccCCceEEEEeC--CCCCCHHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEE
Q 021388 17 EQELERR-FNLFKFWTVSDKTQFLKAQQNNIRAVVGNA--TAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRV 93 (313)
Q Consensus 17 ~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v 93 (313)
++.|++. ++++...+.+..++++.+.++++|+++++. ..++++++++++|+||||++.|+|+||+|++++.++||.|
T Consensus 61 ~~~l~~~g~e~~~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V 140 (385)
T PRK07574 61 RKFLEERGHELVVTSDKDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITV 140 (385)
T ss_pred HHHHHhcCcEEEEeCCCCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEE
Confidence 3456665 444443333334556677889999999853 3579999999999999999999999999999999999999
Q ss_pred EcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCc-ccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEE
Q 021388 94 TNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDY-KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINY 172 (313)
Q Consensus 94 ~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~-~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~ 172 (313)
+|++++++.+||||++++||+++|++..+++.+++|.|..... ..+.+|.|++|||||+|+||+.+|++|++|||+|++
T Consensus 141 ~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~ 220 (385)
T PRK07574 141 AEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY 220 (385)
T ss_pred EcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence 9999999999999999999999999999999999999984321 246789999999999999999999999999999999
Q ss_pred ecCCCCC-----ccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388 173 YSRTEKP-----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE 247 (313)
Q Consensus 173 ~~~~~~~-----~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~ 247 (313)
|||+... ..+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||++||++||++
T Consensus 221 ~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 221 TDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred ECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence 9998632 12333456899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 021388 248 GRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTP 311 (313)
Q Consensus 248 ~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~ 311 (313)
|+|+||++|||++||++.+ |||++|||++|||+||.|.++++++.+.+++||++|++|+++.++
T Consensus 301 G~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~ 365 (385)
T PRK07574 301 GHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDE 365 (385)
T ss_pred CCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999999998765 999999999999999999999999999999999999999998765
No 12
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=4.3e-67 Score=497.90 Aligned_cols=295 Identities=24% Similarity=0.364 Sum_probs=262.6
Q ss_pred hHHHHHHhc-CcEEEeecCCChHHHHHhccCCceEEEEeC--CCCCCHHHHhhCCCccEEEEcCcCCCcCChhhhhhcCc
Q 021388 15 YLEQELERR-FNLFKFWTVSDKTQFLKAQQNNIRAVVGNA--TAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGV 91 (313)
Q Consensus 15 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI 91 (313)
.+.+.|++. ++++...+.+..++++.+.+.++|++++.. ..+++++.++++|+||||++.|+|+||+|++++.++||
T Consensus 66 ~~~~~l~~~g~~~v~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI 145 (386)
T PLN03139 66 GIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGL 145 (386)
T ss_pred cHHHHHHhcCCeEEEeCCCCCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCe
Confidence 355667776 344444333334556677889999999854 24699999999999999999999999999999999999
Q ss_pred EEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC-cccccccCCCEEEEEcCChHHHHHHHHHHhCCCCE
Q 021388 92 RVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD-YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPI 170 (313)
Q Consensus 92 ~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~-~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V 170 (313)
.|+|++|+++.+||||++++||++.|++.++++.+++|.|.... ...+++|.|++|||||+|+||+.+|++|++|||+|
T Consensus 146 ~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V 225 (386)
T PLN03139 146 TVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNL 225 (386)
T ss_pred EEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEE
Confidence 99999999999999999999999999999999999999997422 12467899999999999999999999999999999
Q ss_pred EEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHH
Q 021388 171 NYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSAL 245 (313)
Q Consensus 171 ~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al 245 (313)
++||++.... .+.....++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||++||+++|++||
T Consensus 226 ~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL 305 (386)
T PLN03139 226 LYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADAC 305 (386)
T ss_pred EEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHH
Confidence 9999875322 22334568999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 021388 246 VEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLL 309 (313)
Q Consensus 246 ~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~ 309 (313)
++|+|.||++|||++||++.+ |||++|||++|||+||.|.+++.++.+.+++||.+|++|+++.
T Consensus 306 ~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~~ 370 (386)
T PLN03139 306 SSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFP 370 (386)
T ss_pred HcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999998765 8999999999999999999999999999999999999999754
No 13
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=100.00 E-value=9.9e-67 Score=516.80 Aligned_cols=306 Identities=32% Similarity=0.482 Sum_probs=275.2
Q ss_pred EEEEeCCCChhHHHHHHhc-CcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCCh
Q 021388 5 GVLMACPMNTYLEQELERR-FNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDM 83 (313)
Q Consensus 5 ~vl~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~ 83 (313)
+||+++++.+...+.|.+. +++.. .... +++++.+.++++|++++++.+++++++++++|+||||++.|+|+||+|+
T Consensus 1 ~vli~~~~~~~~~~~l~~~~~~~~~-~~~~-~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~ 78 (525)
T TIGR01327 1 KVLIADPISPDGIDILEDVGVEVDV-QTGL-SREELLEIIPDYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDI 78 (525)
T ss_pred CEEEeCCCCHHHHHHHHhcCcEEEe-CCCC-CHHHHHHHhcCCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcH
Confidence 4788888888887888765 34432 2222 3444567788999999877778999999999999999999999999999
Q ss_pred hhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHH
Q 021388 84 VKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA 163 (313)
Q Consensus 84 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l 163 (313)
++|.++||.|+|+||+++.+||||++++||+++|+++.+++.+++|.|.+..+ .+.+|.||++||||+|+||+.+|++|
T Consensus 79 ~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~-~g~~l~gktvgIiG~G~IG~~vA~~l 157 (525)
T TIGR01327 79 EAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAF-MGTELYGKTLGVIGLGRIGSIVAKRA 157 (525)
T ss_pred HHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccccc-CccccCCCEEEEECCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999985432 47789999999999999999999999
Q ss_pred HhCCCCEEEecCCCCCc----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHH
Q 021388 164 EAFSCPINYYSRTEKPN----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDER 239 (313)
Q Consensus 164 ~~~G~~V~~~~~~~~~~----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~ 239 (313)
++|||+|++||++.... .+.....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++||++
T Consensus 158 ~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~ 237 (525)
T TIGR01327 158 KAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEA 237 (525)
T ss_pred HhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHH
Confidence 99999999999864321 22333458999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388 240 ELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV 313 (313)
Q Consensus 240 al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 313 (313)
||++||++|+++||+||||++||++.+|||++|||++|||+|+.|.++++++...+++|+.+|++|+++.+.||
T Consensus 238 aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn 311 (525)
T TIGR01327 238 ALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVN 311 (525)
T ss_pred HHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceee
Confidence 99999999999999999999999777799999999999999999999999999999999999999999988876
No 14
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=2.5e-66 Score=514.08 Aligned_cols=306 Identities=32% Similarity=0.489 Sum_probs=275.1
Q ss_pred eEEEEeCCCChhHHHHHHhc--CcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcC
Q 021388 4 IGVLMACPMNTYLEQELERR--FNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKV 81 (313)
Q Consensus 4 ~~vl~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~i 81 (313)
++|++++++.+...+.|++. +++... .. .+.+++.+.+.++|++++++.+++++++++++|+||||++.|+|+||+
T Consensus 1 m~ili~~~~~~~~~~~l~~~~~~~v~~~-~~-~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~i 78 (526)
T PRK13581 1 MKVLVSDPISPAGLEILKDAPGVEVDVK-TG-LDKEELLEIIGDYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVDNV 78 (526)
T ss_pred CeEEEeCCCCHHHHHHHhccCCeEEEeC-CC-CCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccccc
Confidence 36889988888887888776 333322 22 233445677889999998777789999999999999999999999999
Q ss_pred ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHH
Q 021388 82 DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAK 161 (313)
Q Consensus 82 d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~ 161 (313)
|+++|.++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.+..+ .+.+|.||++||||+|+||+.+|+
T Consensus 79 d~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~-~g~~l~gktvgIiG~G~IG~~vA~ 157 (526)
T PRK13581 79 DVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKF-MGVELYGKTLGIIGLGRIGSEVAK 157 (526)
T ss_pred cHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCc-cccccCCCEEEEECCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999975332 467899999999999999999999
Q ss_pred HHHhCCCCEEEecCCCCCc----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcccc
Q 021388 162 RAEAFSCPINYYSRTEKPN----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVD 237 (313)
Q Consensus 162 ~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd 237 (313)
++++|||+|++|||+.... .+.... ++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++||
T Consensus 158 ~l~~fG~~V~~~d~~~~~~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vd 236 (526)
T PRK13581 158 RAKAFGMKVIAYDPYISPERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIID 236 (526)
T ss_pred HHHhCCCEEEEECCCCChhHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeC
Confidence 9999999999999865321 223333 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388 238 ERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV 313 (313)
Q Consensus 238 ~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 313 (313)
++||++||++|+++||+||||++||++.+|||++|||++|||+|+.|.++++++.+.+++|+.+|++|+++.+.||
T Consensus 237 e~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn 312 (526)
T PRK13581 237 EAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVN 312 (526)
T ss_pred HHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceee
Confidence 9999999999999999999999999887799999999999999999999999999999999999999999988876
No 15
>PRK08605 D-lactate dehydrogenase; Validated
Probab=100.00 E-value=1e-64 Score=476.62 Aligned_cols=312 Identities=19% Similarity=0.269 Sum_probs=274.4
Q ss_pred CCceEEEEeCCCChhHHHHHHhcCcEEE-eecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCC--ccEEEEcCcC
Q 021388 1 MESIGVLMACPMNTYLEQELERRFNLFK-FWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPK--LEIVSSFSVG 77 (313)
Q Consensus 1 m~~~~vl~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~--Lk~i~~~~~G 77 (313)
|.|++++.+.+......+.+.+.+++.. .+....+++. .+.+.++|+++++..+++++++++++|+ ||||++.|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G 79 (332)
T PRK08605 1 MTKIKIMSVRDEDAPYIKAWAEKHHVEVDLTKEALTDDN-VEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAG 79 (332)
T ss_pred CcEEEEEecCHHHHHHHHHHHHhcCeEEEEecCCCCHHH-HHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccc
Confidence 7899999998876677777777665432 2222234444 3667899999987778899999999997 9999999999
Q ss_pred CCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHH
Q 021388 78 LDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGM 157 (313)
Q Consensus 78 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~ 157 (313)
+|++|+++++++||.|+|+||+++.+||||+++++|+++|++..+++.+++|.|.......+++|+|++|||||+|.||+
T Consensus 80 ~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~ 159 (332)
T PRK08605 80 FDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGL 159 (332)
T ss_pred cchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHH
Confidence 99999999999999999999999999999999999999999999999999998752221246789999999999999999
Q ss_pred HHHHHH-HhCCCCEEEecCCCCCcc--ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCc
Q 021388 158 AVAKRA-EAFSCPINYYSRTEKPNL--KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGP 234 (313)
Q Consensus 158 ~iA~~l-~~~G~~V~~~~~~~~~~~--~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~ 234 (313)
.+|++| ++||++|++||++..... ......++++++++||+|++|+|.++.|+++++++.++.||+|++|||+|||.
T Consensus 160 ~vA~~L~~~~g~~V~~~d~~~~~~~~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~ 239 (332)
T PRK08605 160 AVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGS 239 (332)
T ss_pred HHHHHHHhcCCCEEEEECCCccHhHHhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCc
Confidence 999999 789999999998765321 22334589999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCeeEEEecCCCCCCC--CCC------------cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHH
Q 021388 235 HVDERELVSALVEGRLGGAGLDVFENEPH--VPE------------ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300 (313)
Q Consensus 235 ~vd~~al~~al~~~~l~ga~lDV~~~Ep~--~~~------------~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~ 300 (313)
++|+++|.++|++|+|.||+||||+.||. +.+ +||++|||++|||+|++|.++.+++...+++|+.
T Consensus 240 ~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~ 319 (332)
T PRK08605 240 LVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATL 319 (332)
T ss_pred ccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999982 322 4999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCC
Q 021388 301 AHFLNKPLLTPVV 313 (313)
Q Consensus 301 ~~~~g~~~~~~v~ 313 (313)
+|++|++..++||
T Consensus 320 ~~~~g~~~~~~~~ 332 (332)
T PRK08605 320 EVLQTGTTRLRVN 332 (332)
T ss_pred HHHcCCCCCCCcC
Confidence 9999999999887
No 16
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=9.1e-65 Score=475.98 Aligned_cols=308 Identities=20% Similarity=0.309 Sum_probs=265.7
Q ss_pred eEEEEeCCCC---hhHHHHHHhcCcEE-EeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCC--CccEEEEcCcC
Q 021388 4 IGVLMACPMN---TYLEQELERRFNLF-KFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALP--KLEIVSSFSVG 77 (313)
Q Consensus 4 ~~vl~~~~~~---~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~--~Lk~i~~~~~G 77 (313)
+||++-..-. +.+.+.+++. .+. ...+.+.+++. .+.++++|+++++..+++++++++++| +||+|++.++|
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G 79 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKN-NVEVTTSKELLSSAT-VDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAG 79 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhc-CeEEEEcCCCCCHHH-HHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEecccc
Confidence 5666644322 2333444444 322 22233345554 567889999998776789999999998 89999999999
Q ss_pred CCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHH
Q 021388 78 LDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGM 157 (313)
Q Consensus 78 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~ 157 (313)
+|++|++++.++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|.......+.+|+|++|||||+|.||+
T Consensus 80 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~ 159 (330)
T PRK12480 80 FDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGA 159 (330)
T ss_pred cchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHH
Confidence 99999999999999999999999999999999999999999999999999987642111246789999999999999999
Q ss_pred HHHHHHHhCCCCEEEecCCCCCccc-cccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccc
Q 021388 158 AVAKRAEAFSCPINYYSRTEKPNLK-YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV 236 (313)
Q Consensus 158 ~iA~~l~~~G~~V~~~~~~~~~~~~-~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~v 236 (313)
.+|++|++||++|++||+++..... .....++++++++||+|++|+|++++|+++++++.++.||+|++|||+|||.+|
T Consensus 160 ~vA~~L~~~G~~V~~~d~~~~~~~~~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~v 239 (330)
T PRK12480 160 ATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVI 239 (330)
T ss_pred HHHHHHHhCCCEEEEEeCChhHhhhhhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcccc
Confidence 9999999999999999998754332 223458999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHhCCeeEEEecCCCCCCCC----------C----CcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHH
Q 021388 237 DERELVSALVEGRLGGAGLDVFENEPHV----------P----EELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAH 302 (313)
Q Consensus 237 d~~al~~al~~~~l~ga~lDV~~~Ep~~----------~----~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~ 302 (313)
|+++|++||++|++.||+||||++||+. + +|||++|||++|||+|++|.++++++.+.+++|+.+|
T Consensus 240 d~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~ 319 (330)
T PRK12480 240 NTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSV 319 (330)
T ss_pred CHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999962 1 2699999999999999999999999999999999999
Q ss_pred HcCCCCCCCCC
Q 021388 303 FLNKPLLTPVV 313 (313)
Q Consensus 303 ~~g~~~~~~v~ 313 (313)
++|+...++||
T Consensus 320 ~~~~~~~~~~~ 330 (330)
T PRK12480 320 INTGTCETRLN 330 (330)
T ss_pred HhCCCCcccCC
Confidence 99999999987
No 17
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=100.00 E-value=7.2e-65 Score=459.24 Aligned_cols=304 Identities=29% Similarity=0.432 Sum_probs=275.2
Q ss_pred EEEEeCCCChhHHHHHHhcC-cEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHh-hCCCccEEEEcCcCCCcCC
Q 021388 5 GVLMACPMNTYLEQELERRF-NLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELID-ALPKLEIVSSFSVGLDKVD 82 (313)
Q Consensus 5 ~vl~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~-~~~~Lk~i~~~~~G~d~id 82 (313)
+||+++++...-.+.|++.+ ++..+.+. ..+ ++...++++|++++++.+++++++++ ...+||+|++.++|+||+|
T Consensus 8 ~il~~e~~~~~~~~~l~~~g~~v~~~~~~-~~e-el~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVD 85 (406)
T KOG0068|consen 8 KILVAESLDQACIEILKDNGYQVEFKKNL-SLE-ELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVD 85 (406)
T ss_pred eEEEecccchHHHHHHHhcCceEEEeccC-CHH-HHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccC
Confidence 69999999999999999987 44443333 233 56677899999999999999999999 4568999999999999999
Q ss_pred hhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHH
Q 021388 83 MVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKR 162 (313)
Q Consensus 83 ~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~ 162 (313)
++++.++||.|.|+|.+|..++||+++++++++.|++.+....+++|+|++..+ .|.++.|||+||+|+|.||+.+|++
T Consensus 86 L~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~-~G~el~GKTLgvlG~GrIGseVA~r 164 (406)
T KOG0068|consen 86 LKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKY-LGWELRGKTLGVLGLGRIGSEVAVR 164 (406)
T ss_pred hhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecce-eeeEEeccEEEEeecccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999997665 6899999999999999999999999
Q ss_pred HHhCCCCEEEecCCCCCccc-c--ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHH
Q 021388 163 AEAFSCPINYYSRTEKPNLK-Y--KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDER 239 (313)
Q Consensus 163 l~~~G~~V~~~~~~~~~~~~-~--~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~ 239 (313)
++++||+|++||+-...... . ....+++|++..||+|.+|+|++|+|++++|.+.|+.||+|..+||++||++||++
T Consensus 165 ~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ 244 (406)
T KOG0068|consen 165 AKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEP 244 (406)
T ss_pred HHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechH
Confidence 99999999999986543221 1 13568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeeEEEecCCCCCCCCC---CcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 021388 240 ELVSALVEGRLGGAGLDVFENEPHVP---EELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312 (313)
Q Consensus 240 al~~al~~~~l~ga~lDV~~~Ep~~~---~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v 312 (313)
||++|+++|++.||++|||+.||... ..|.+||||++|||+|++|.|++.++....++++..|.+| .....|
T Consensus 245 ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~-~~~g~V 319 (406)
T KOG0068|consen 245 ALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING-NSAGSV 319 (406)
T ss_pred HHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc-Ccccee
Confidence 99999999999999999999999774 4799999999999999999999999999999999999998 444333
No 18
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=6.2e-61 Score=446.59 Aligned_cols=292 Identities=23% Similarity=0.348 Sum_probs=247.7
Q ss_pred EEEEeCCC-Chh-HHHHHHhcCcEEEe--ecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCc
Q 021388 5 GVLMACPM-NTY-LEQELERRFNLFKF--WTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDK 80 (313)
Q Consensus 5 ~vl~~~~~-~~~-~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~ 80 (313)
.+++..+. ... +.+.|++.++...+ +..+ + ..++|+++++.. +.+.++ .|+||||++.|+|+|+
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~---~-----~~~a~~~~~~~~---~~~~l~-~~~Lk~I~~~~aG~d~ 69 (312)
T PRK15469 2 DIIFYHPTFDTQWWIEALRKALPQARVRAWKSG---D-----NDPADYALVWHP---PVEMLA-GRDLKAVFALGAGVDS 69 (312)
T ss_pred EEEEeCCccCHHHHHHHHHHHCCCCeEEecCCC---C-----CccCeEEEEeCC---ChHHhc-cCCceEEEEcccccch
Confidence 44544443 444 66777776553322 2221 1 368999998652 457776 5899999999999999
Q ss_pred CChhh-----hhhcCcEEEcCCC-CChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCCh
Q 021388 81 VDMVK-----CKEKGVRVTNTPD-VLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGR 154 (313)
Q Consensus 81 id~~~-----~~~~gI~v~n~~~-~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~ 154 (313)
+|... +.++||.|+|+++ .++.+||||+++++|++.|++..+...++++.|... ...++.|+||||||+|.
T Consensus 70 i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~---~~~~l~g~tvgIvG~G~ 146 (312)
T PRK15469 70 ILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL---PEYHREDFTIGILGAGV 146 (312)
T ss_pred hhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC---CCCCcCCCEEEEECCCH
Confidence 98322 4458999999864 689999999999999999999999999999999742 24579999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEecCCCCCccccc---cCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcC
Q 021388 155 IGMAVAKRAEAFSCPINYYSRTEKPNLKYK---YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231 (313)
Q Consensus 155 iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~---~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~ 231 (313)
||+.+|++|++|||+|.+||++.+...+.. ...++++++++||+|++|+|+|++|+++++++.|+.||+|++|||+|
T Consensus 147 IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 147 LGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 999999999999999999998765433222 24579999999999999999999999999999999999999999999
Q ss_pred CCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 021388 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLT 310 (313)
Q Consensus 232 rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~ 310 (313)
||++||+++|++||++|+++||++|||++||++.+ |||++|||++|||+||.|.+. ++...+.+|+++|++|+++.+
T Consensus 227 RG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~~~~ 304 (312)
T PRK15469 227 RGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA--EAVEYISRTIAQLEKGERVCG 304 (312)
T ss_pred CccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCCCcc
Confidence 99999999999999999999999999999998865 899999999999999999874 688999999999999999999
Q ss_pred CCC
Q 021388 311 PVV 313 (313)
Q Consensus 311 ~v~ 313 (313)
.|+
T Consensus 305 ~V~ 307 (312)
T PRK15469 305 QVD 307 (312)
T ss_pred cCC
Confidence 885
No 19
>PRK06436 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.3e-60 Score=439.53 Aligned_cols=285 Identities=27% Similarity=0.394 Sum_probs=244.3
Q ss_pred EEEEeCCCChhHHHHHHhcCcEE-EeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCCh
Q 021388 5 GVLMACPMNTYLEQELERRFNLF-KFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDM 83 (313)
Q Consensus 5 ~vl~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~ 83 (313)
++++..++.+.+.+.+.+.++.. ..+. + ...++|++++... +...++||||++.++|+|++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~a~~~~~~~~-------~~~~~~Lk~I~~~~aG~D~id~ 65 (303)
T PRK06436 2 NVYVNFPMSKKLLEICRDILDLDDVHWY-P--------DYYDAEAILIKGR-------YVPGKKTKMIQSLSAGVDHIDV 65 (303)
T ss_pred eEEEEccCCHHHHHHHHhhcccceeEec-c--------ccCCCCEEEecCC-------cCCCCCeEEEEECCcccCcccH
Confidence 35566788888887766544321 1111 1 1357888865332 2345799999999999999999
Q ss_pred hhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHH
Q 021388 84 VKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA 163 (313)
Q Consensus 84 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l 163 (313)
+++.++||.++|. |+++.+||||+++++|+++|+++++++.+++|.|.+. .+.+|+||++||||+|+||+.+|+++
T Consensus 66 ~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~---~~~~L~gktvgIiG~G~IG~~vA~~l 141 (303)
T PRK06436 66 SGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS---PTKLLYNKSLGILGYGGIGRRVALLA 141 (303)
T ss_pred HHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC---CCCCCCCCEEEEECcCHHHHHHHHHH
Confidence 9999888888775 7889999999999999999999999999999999853 35689999999999999999999999
Q ss_pred HhCCCCEEEecCCCCCccccc-cCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHH
Q 021388 164 EAFSCPINYYSRTEKPNLKYK-YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELV 242 (313)
Q Consensus 164 ~~~G~~V~~~~~~~~~~~~~~-~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~ 242 (313)
++|||+|++|||+.... +.. ...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|.
T Consensus 142 ~afG~~V~~~~r~~~~~-~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~ 220 (303)
T PRK06436 142 KAFGMNIYAYTRSYVND-GISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDML 220 (303)
T ss_pred HHCCCEEEEECCCCccc-CcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHH
Confidence 99999999999975432 222 2568999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388 243 SALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVG-SGTVETRKTMADLVLGNLEAHFLNKPLLTPVV 313 (313)
Q Consensus 243 ~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a-~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 313 (313)
++|++|++.||++|||++||++++. .+|||++|||++ +.|.++.+++...+++||.+|++|++ .+.|+
T Consensus 221 ~aL~~g~i~~a~lDV~~~EP~~~~~--~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~ 289 (303)
T PRK06436 221 NFLRNHNDKYYLSDVWWNEPIITET--NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP-KNIVR 289 (303)
T ss_pred HHHHcCCceEEEEccCCCCCCCccC--CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC-CceEc
Confidence 9999999999999999999987654 689999999986 58899999999999999999999987 57664
No 20
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=100.00 E-value=3.1e-60 Score=449.39 Aligned_cols=277 Identities=23% Similarity=0.326 Sum_probs=241.3
Q ss_pred eEEEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCCh
Q 021388 4 IGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDM 83 (313)
Q Consensus 4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~ 83 (313)
|||++.+.+ +...+.+.+.+++......+.+. +.+.++|++++++.+++++++++ .|+||||+++++|+||+|+
T Consensus 1 mkIl~d~~~-~~~~~~~~~~~ev~~~~~~~~~~----~~l~daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~ 74 (378)
T PRK15438 1 MKILVDENM-PYARELFSRLGEVKAVPGRPIPV----AQLADADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVDE 74 (378)
T ss_pred CEEEEeCCc-chHHHHHhhcCcEEEeCCCCCCH----HHhCCCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccCH
Confidence 478887655 55556666555655543222222 33678999999887889999996 6999999999999999999
Q ss_pred hhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHH
Q 021388 84 VKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA 163 (313)
Q Consensus 84 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l 163 (313)
+++.++||.|+|+||+++.+||||+++++|++.|+. +.++.|+||||||+|+||+.+|++|
T Consensus 75 ~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~-------------------g~~L~gktvGIIG~G~IG~~vA~~l 135 (378)
T PRK15438 75 AWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD-------------------GFSLHDRTVGIVGVGNVGRRLQARL 135 (378)
T ss_pred HHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC-------------------CCCcCCCEEEEECcCHHHHHHHHHH
Confidence 999999999999999999999999999999999852 3469999999999999999999999
Q ss_pred HhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChh----hhcccCHHHHhccCCCcEEEEcCCCccccHH
Q 021388 164 EAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEE----TRHIINREVIDALGPKGVLINIGRGPHVDER 239 (313)
Q Consensus 164 ~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~----t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~ 239 (313)
++|||+|++||+..........+.++++++++||+|++|+|+|++ |+++++++.|+.||+|++|||+|||++||++
T Consensus 136 ~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~ 215 (378)
T PRK15438 136 EALGIKTLLCDPPRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNT 215 (378)
T ss_pred HHCCCEEEEECCcccccccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHH
Confidence 999999999998643222112356899999999999999999996 9999999999999999999999999999999
Q ss_pred HHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021388 240 ELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP 307 (313)
Q Consensus 240 al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~ 307 (313)
||+++|++|++.||+||||++||.++.+||..++ ++|||+||+|.+...++..++.+|+.+|+ |.+
T Consensus 216 AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~-~~~ 281 (378)
T PRK15438 216 ALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFI-GHE 281 (378)
T ss_pred HHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHH-cCc
Confidence 9999999999999999999999987778988776 99999999999999999999999999999 444
No 21
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1.3e-59 Score=446.34 Aligned_cols=278 Identities=21% Similarity=0.351 Sum_probs=242.9
Q ss_pred eEEEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCCh
Q 021388 4 IGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDM 83 (313)
Q Consensus 4 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~ 83 (313)
|||++.+.+ |...+.+.+..++...... ++..+.++++|++++++.+++++++++. ++||||++.++|+||+|+
T Consensus 1 mkI~~d~~~-p~~~~~~~~~~~v~~~~~~----~~~~~~l~daD~liv~~~t~v~~~ll~~-~~Lk~I~~~~~G~D~iD~ 74 (381)
T PRK00257 1 MKIVADENI-PLLDAFFAGFGEIRRLPGR----AFDRAAVRDADVLLVRSVTRVDRALLEG-SRVRFVGTCTIGTDHLDL 74 (381)
T ss_pred CEEEEecCc-hhHHHHHhhCCcEEEcCCc----ccCHHHhCCceEEEEeCCCCCCHHHhcC-CCCeEEEECCccccccCH
Confidence 578886555 5555555554454433211 1123456899999998878899999985 899999999999999999
Q ss_pred hhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHH
Q 021388 84 VKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA 163 (313)
Q Consensus 84 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l 163 (313)
+++.++||.|+|+||+++.+||||+++++|++.|+. +.++.|++|||||+|+||+.+|+++
T Consensus 75 ~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~~-------------------g~~l~gktvGIIG~G~IG~~va~~l 135 (381)
T PRK00257 75 DYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAERE-------------------GVDLAERTYGVVGAGHVGGRLVRVL 135 (381)
T ss_pred HHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhccc-------------------CCCcCcCEEEEECCCHHHHHHHHHH
Confidence 999999999999999999999999999999998751 3579999999999999999999999
Q ss_pred HhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCCh----hhhcccCHHHHhccCCCcEEEEcCCCccccHH
Q 021388 164 EAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTE----ETRHIINREVIDALGPKGVLINIGRGPHVDER 239 (313)
Q Consensus 164 ~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~----~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~ 239 (313)
++|||+|++||+......+.....++++++++||+|++|+|+|+ .|+++|+++.|+.||+|++|||+|||++||++
T Consensus 136 ~a~G~~V~~~Dp~~~~~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~ 215 (381)
T PRK00257 136 RGLGWKVLVCDPPRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQ 215 (381)
T ss_pred HHCCCEEEEECCcccccccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHH
Confidence 99999999999865433332345689999999999999999999 59999999999999999999999999999999
Q ss_pred HHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021388 240 ELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP 307 (313)
Q Consensus 240 al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~ 307 (313)
||+++|++|++.||+||||++||.++.+||+. |+++|||+||+|.++..++..++++|+.+|+++.+
T Consensus 216 AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~ 282 (381)
T PRK00257 216 ALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPA 282 (381)
T ss_pred HHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999877789885 99999999999999999999999999999998775
No 22
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=100.00 E-value=1.9e-59 Score=432.76 Aligned_cols=272 Identities=50% Similarity=0.829 Sum_probs=246.2
Q ss_pred ccCCceEEE-EeCCCCCCHHHHhhC-CCccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhch
Q 021388 42 QQNNIRAVV-GNATAGADAELIDAL-PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119 (313)
Q Consensus 42 ~~~~~~~i~-~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~ 119 (313)
...+...++ +......+.+.+.+. |++|+|+++|+|+||+|+++|++|||+|+|+|+.+..+|||++++++|.++|++
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~ 136 (336)
T KOG0069|consen 57 RIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRF 136 (336)
T ss_pred hccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhh
Confidence 344444444 444556778888886 899999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCCCC-CCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcccc----ccCCCHHHHhh
Q 021388 120 CESDRYVRSGKWK-KGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY----KYYPSVVELAS 194 (313)
Q Consensus 120 ~~~~~~~~~~~w~-~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~----~~~~~l~e~~~ 194 (313)
..+++.+++|.|. ...++.+..+.||+|||+|+|+||+.+|++|++||+.+.|++|++...... ....+++++++
T Consensus 137 ~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~ 216 (336)
T KOG0069|consen 137 SEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLA 216 (336)
T ss_pred hhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHh
Confidence 9999999999994 333456788999999999999999999999999998888888877643321 12568999999
Q ss_pred cCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCce
Q 021388 195 NCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENV 274 (313)
Q Consensus 195 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv 274 (313)
+||+|++|||+|++|++++|++.+.+||+|+++||++||.++|++++.+||++|++.+|++|||++||.++++|+.++|+
T Consensus 217 ~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnv 296 (336)
T KOG0069|consen 217 NSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNV 296 (336)
T ss_pred hCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999666799999999
Q ss_pred EEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 021388 275 VLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV 313 (313)
Q Consensus 275 ~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~ 313 (313)
++|||+|+.|.+++.+|...++.|+.+|++|+++.++|+
T Consensus 297 v~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~~ 335 (336)
T KOG0069|consen 297 VILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTPVL 335 (336)
T ss_pred eEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCcCC
Confidence 999999999999999999999999999999999988874
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=100.00 E-value=2.7e-47 Score=328.85 Aligned_cols=173 Identities=45% Similarity=0.696 Sum_probs=151.8
Q ss_pred HHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc----cc
Q 021388 109 IGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK----YK 184 (313)
Q Consensus 109 l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~----~~ 184 (313)
+++||++.|++.++++.++++.|.......+.+++|++|||||+|+||+.+|+++++|||+|++|||+...... ..
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 68999999999999999999999211123577899999999999999999999999999999999999875431 12
Q ss_pred cCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCC
Q 021388 185 YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHV 264 (313)
Q Consensus 185 ~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~ 264 (313)
...+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||++|||+.||++
T Consensus 81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 160 (178)
T PF02826_consen 81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLP 160 (178)
T ss_dssp EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-cccCCCceEEccCCC
Q 021388 265 PE-ELFGLENVVLMPHVG 281 (313)
Q Consensus 265 ~~-~L~~~pnv~lTPH~a 281 (313)
.+ |||++|||++|||+|
T Consensus 161 ~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 161 ADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTHHHHTSTTEEEESS-T
T ss_pred CCChHHcCCCEEEeCccC
Confidence 76 999999999999987
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=100.00 E-value=4.9e-33 Score=254.91 Aligned_cols=275 Identities=23% Similarity=0.345 Sum_probs=243.5
Q ss_pred EEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCChHHHHH
Q 021388 27 FKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVAD 106 (313)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE 106 (313)
+-+.+...+.|..++.+.++-.-+.+.+..++++.+++++.||++...+.|+|++|+.++.+-||.|||.|+...+.+|+
T Consensus 55 vafcdaqstqeIhekvLneavgam~yh~i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~ 134 (435)
T KOG0067|consen 55 VAFCDAQSTQEIHEKVLNEAVGAMMYHTITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETAD 134 (435)
T ss_pred eeeecccchHHHHHHHHHHhhhcceeeecccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHH
Confidence 44556666777777777777666777778899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhchhHHHHHHhcCCCCCCCcc------cccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC--
Q 021388 107 LAIGLMLAVLRRLCESDRYVRSGKWKKGDYK------LTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK-- 178 (313)
Q Consensus 107 ~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~------~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~-- 178 (313)
-++..||.++|+.....+..++|.|.+.... -.....|.+.|++|+|..|++++.++++||+.|+.||+...
T Consensus 135 stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g 214 (435)
T KOG0067|consen 135 STLCHILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDG 214 (435)
T ss_pred HHHHHHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhh
Confidence 9999999999999999999999988632211 12357999999999999999999999999999999998764
Q ss_pred --CccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEec
Q 021388 179 --PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD 256 (313)
Q Consensus 179 --~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lD 256 (313)
+..+.++..++++++.++|.+++|+.+++++.++++.-.+++|++|++++|++||.++|+++|.++|++|++++++
T Consensus 215 ~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-- 292 (435)
T KOG0067|consen 215 IDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-- 292 (435)
T ss_pred hhhhcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc--
Confidence 3345666678999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCC--CCcccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 021388 257 VFENEPHV--PEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPL 308 (313)
Q Consensus 257 V~~~Ep~~--~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~~ 308 (313)
|.. ..||.+.||.++|||.+++++.+..++.+.+...+++-..|+-+
T Consensus 293 -----~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip 341 (435)
T KOG0067|consen 293 -----PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIP 341 (435)
T ss_pred -----CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCc
Confidence 322 24899999999999999999999999999999999888877643
No 25
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=99.91 E-value=3.1e-23 Score=170.37 Aligned_cols=101 Identities=27% Similarity=0.451 Sum_probs=85.6
Q ss_pred EEEeCCCChhHHHHHHhcCcEEEeecCCChHHHHHhccCCceEEEEeCCCCCCHHHHhhCCCccEEEEcCcCCCcCChhh
Q 021388 6 VLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVK 85 (313)
Q Consensus 6 vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~ 85 (313)
||+++++.+..++.|++.+++. +.+. .+++++.+.++++|+++++..+++++++++.+|+||||++.|+|+|++|+++
T Consensus 1 ili~~~~~~~~~~~l~~~~~v~-~~~~-~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~ 78 (133)
T PF00389_consen 1 ILITDPLPDEEIERLEEGFEVE-FCDS-PSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDLEA 78 (133)
T ss_dssp EEESSS-SHHHHHHHHHTSEEE-EESS-SSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-HHH
T ss_pred eEEeccCCHHHHHHHHCCceEE-EeCC-CCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccHHH
Confidence 7899999999999999966444 4443 3455667788999999998777799999999999999999999999999999
Q ss_pred hhhcCcEEEcCCCCChHHHHHHH
Q 021388 86 CKEKGVRVTNTPDVLTDDVADLA 108 (313)
Q Consensus 86 ~~~~gI~v~n~~~~~~~~vAE~a 108 (313)
++++||.|+|+||+++.+||||+
T Consensus 79 a~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 79 AKERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHHTTSEEEE-TTTTHHHHHHHH
T ss_pred HhhCeEEEEEeCCcCCcchhccc
Confidence 99999999999999999999999
No 26
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=99.86 E-value=3.4e-21 Score=186.26 Aligned_cols=166 Identities=22% Similarity=0.295 Sum_probs=135.9
Q ss_pred EcCcCCCcC-ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEc
Q 021388 73 SFSVGLDKV-DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIG 151 (313)
Q Consensus 73 ~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG 151 (313)
-+++|+..+ .+.....-||+|+|+|+.+..+++|+++++++++... .+|.+ +..+.|++++|+|
T Consensus 197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~------~~R~~---------~~~LaGKtVgVIG 261 (476)
T PTZ00075 197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDG------IFRAT---------DVMIAGKTVVVCG 261 (476)
T ss_pred cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHH------HHHhc---------CCCcCCCEEEEEC
Confidence 347777765 2333344689999999999999999999999999833 33433 3469999999999
Q ss_pred CChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcE
Q 021388 152 LGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGV 226 (313)
Q Consensus 152 ~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~ 226 (313)
+|.||+.+|+++++||++|+++++++... .++. ..+++++++.+|+|++|+. +.++|+.+.|+.||+|++
T Consensus 262 ~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~-~~~leell~~ADIVI~atG----t~~iI~~e~~~~MKpGAi 336 (476)
T PTZ00075 262 YGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQ-VVTLEDVVETADIFVTATG----NKDIITLEHMRRMKNNAI 336 (476)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCce-eccHHHHHhcCCEEEECCC----cccccCHHHHhccCCCcE
Confidence 99999999999999999999997765432 1222 3478999999999999853 788999999999999999
Q ss_pred EEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCC
Q 021388 227 LINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVP 265 (313)
Q Consensus 227 lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~ 265 (313)
+||+||+ |.+.++++|+.+. ++|+++.||...
T Consensus 337 LINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~ 368 (476)
T PTZ00075 337 VGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD 368 (476)
T ss_pred EEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence 9999999 7888889998754 789999999654
No 27
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.82 E-value=3.4e-20 Score=171.19 Aligned_cols=177 Identities=16% Similarity=0.225 Sum_probs=140.5
Q ss_pred hccCCceEEEEeC----------------CCCCCHHHHhhCCCccEEEEcCcCCCcCChh-hhhhcCcEEE------cCC
Q 021388 41 AQQNNIRAVVGNA----------------TAGADAELIDALPKLEIVSSFSVGLDKVDMV-KCKEKGVRVT------NTP 97 (313)
Q Consensus 41 ~~~~~~~~i~~~~----------------~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~-~~~~~gI~v~------n~~ 97 (313)
..++++|+++..- ..++++++++.+| .++...+|+++.|++ +|.++||+|+ |++
T Consensus 50 ~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~---~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va 126 (287)
T TIGR02853 50 LDLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK---GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVA 126 (287)
T ss_pred hhhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC---CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceE
Confidence 3467888888631 2235688899888 377788999999998 8999999999 999
Q ss_pred CCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388 98 DVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177 (313)
Q Consensus 98 ~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~ 177 (313)
.+++.++||+++++++.. .+.++.|++++|+|+|.||+.+|+.|+++|++|.+++|+.
T Consensus 127 ~~n~~~~Ae~ai~~al~~----------------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 127 IYNSIPTAEGAIMMAIEH----------------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred EEccHhHHHHHHHHHHHh----------------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 999999999999877743 1236889999999999999999999999999999999987
Q ss_pred CCcc-----ccc--cCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCc-cccHHHHHHHHHhCC
Q 021388 178 KPNL-----KYK--YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGP-HVDERELVSALVEGR 249 (313)
Q Consensus 178 ~~~~-----~~~--~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~-~vd~~al~~al~~~~ 249 (313)
+... +.. ...++.++++++|+|++|+|.+ +++++.++.||+++++||++..+ -+|. ++.++..
T Consensus 185 ~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~-----ii~~~~l~~~k~~aliIDlas~Pg~tdf----~~Ak~~G 255 (287)
T TIGR02853 185 ADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL-----VLTADVLSKLPKHAVIIDLASKPGGTDF----EYAKKRG 255 (287)
T ss_pred HHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH-----HhCHHHHhcCCCCeEEEEeCcCCCCCCH----HHHHHCC
Confidence 5321 221 1235778899999999999864 67888999999999999999854 2343 4455555
Q ss_pred ee
Q 021388 250 LG 251 (313)
Q Consensus 250 l~ 251 (313)
+.
T Consensus 256 ~~ 257 (287)
T TIGR02853 256 IK 257 (287)
T ss_pred CE
Confidence 55
No 28
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.66 E-value=4e-15 Score=138.13 Aligned_cols=165 Identities=15% Similarity=0.251 Sum_probs=129.1
Q ss_pred HhccCCceEEEEeCC----------------CCCCHHHHhhCCCccEEEEcCcCCCcCChhhhhhcCcEEEcCCCC----
Q 021388 40 KAQQNNIRAVVGNAT----------------AGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDV---- 99 (313)
Q Consensus 40 ~~~~~~~~~i~~~~~----------------~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~---- 99 (313)
.+.++++|+++..-. ..++++.++.+|+...+. .|.+.++++ +.+.++||++.+....
T Consensus 50 ~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~ 127 (296)
T PRK08306 50 EEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVA 127 (296)
T ss_pred HHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhh
Confidence 345678999996411 123688999999997555 488889987 7888999999987754
Q ss_pred --ChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388 100 --LTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177 (313)
Q Consensus 100 --~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~ 177 (313)
++.++||.++.+.+.. .+..+.|++++|+|+|.+|+.+++.|+++|++|.++||++
T Consensus 128 ~~ns~~~aegav~~a~~~----------------------~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 128 ILNSIPTAEGAIMMAIEH----------------------TPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred hhccHhHHHHHHHHHHHh----------------------CCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 8899999977754321 1235788999999999999999999999999999999986
Q ss_pred CCc-----cccc--cCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCC
Q 021388 178 KPN-----LKYK--YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG 233 (313)
Q Consensus 178 ~~~-----~~~~--~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg 233 (313)
... .+.. ...++.+.++++|+|+.++|. .+++++.++.|++++++||++..
T Consensus 186 ~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~ 243 (296)
T PRK08306 186 AHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLASK 243 (296)
T ss_pred HHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence 532 1222 123567889999999999883 35788999999999999999863
No 29
>PLN02494 adenosylhomocysteinase
Probab=99.59 E-value=2.4e-15 Score=145.52 Aligned_cols=116 Identities=17% Similarity=0.214 Sum_probs=100.5
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~ 215 (313)
.+.|++++|+|+|.||+.+|+++++||++|+++++++... .++. ..+++++++.+|+|+.+ ..++++++.
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~-vv~leEal~~ADVVI~t----TGt~~vI~~ 325 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQ-VLTLEDVVSEADIFVTT----TGNKDIIMV 325 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCe-eccHHHHHhhCCEEEEC----CCCccchHH
Confidence 3789999999999999999999999999999998876432 1232 24688999999999873 347789999
Q ss_pred HHHhccCCCcEEEEcCC-CccccHHHHHHH--HHhCCeeEEEecCCCCCC
Q 021388 216 EVIDALGPKGVLINIGR-GPHVDERELVSA--LVEGRLGGAGLDVFENEP 262 (313)
Q Consensus 216 ~~l~~mk~ga~lIn~~r-g~~vd~~al~~a--l~~~~l~ga~lDV~~~Ep 262 (313)
+.|+.||+|++++|+|| +..||.++|.++ ++.+.++ +.+|+|+.|-
T Consensus 326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 99999999999999999 689999999998 9999998 8999998764
No 30
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.59 E-value=5.4e-15 Score=135.32 Aligned_cols=116 Identities=23% Similarity=0.333 Sum_probs=103.4
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC------ccccccCCCHHHHhhcCCEEEEecCCChhhhcccC--HH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP------NLKYKYYPSVVELASNCHILVVACPLTEETRHIIN--RE 216 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~------~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~--~~ 216 (313)
++||+||+|.||.+||++|.+.|++|.+|||++++ ..+.....+..|+++++|+|++|+|..++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 47999999999999999999999999999999876 22556677889999999999999999999999884 67
Q ss_pred HHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEec--CCCCCC
Q 021388 217 VIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD--VFENEP 262 (313)
Q Consensus 217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lD--V~~~Ep 262 (313)
.++.+|+|+++||+++.+....+.+.++++++.+. .+| |....+
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDAPVsGg~~ 126 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDAPVSGGVP 126 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEecCccCCch
Confidence 99999999999999999999999999999999998 666 444444
No 31
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.57 E-value=4.2e-15 Score=126.26 Aligned_cols=111 Identities=20% Similarity=0.373 Sum_probs=91.0
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhccc-CHHHH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHII-NREVI 218 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li-~~~~l 218 (313)
++|||||+|.||+.||++|.+.|++|.+|||++++. .+.....++.|+++++|+|++++|..++++.++ ..+.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 589999999999999999999999999999987542 345567899999999999999999988888776 22278
Q ss_pred hccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388 219 DALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV 257 (313)
Q Consensus 219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV 257 (313)
+.+++|.++||+++.+.-+...+.+.+++..+. ++|+
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda 118 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVR--YVDA 118 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE--EEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccce--eeee
Confidence 899999999999999999999999999998877 7775
No 32
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.51 E-value=3.3e-14 Score=131.57 Aligned_cols=89 Identities=25% Similarity=0.288 Sum_probs=75.9
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIIN 214 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~ 214 (313)
..|+||+|||||+|+||+++|++|+++|++|++|++..... .++. ..++++++++||+|++|+|+ ++++++++
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~-v~sl~Eaak~ADVV~llLPd-~~t~~V~~ 89 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFE-VMSVSEAVRTAQVVQMLLPD-EQQAHVYK 89 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCE-ECCHHHHHhcCCEEEEeCCC-hHHHHHHH
Confidence 35999999999999999999999999999999997654321 1333 34899999999999999997 66789999
Q ss_pred HHHHhccCCCcEEEEc
Q 021388 215 REVIDALGPKGVLINI 230 (313)
Q Consensus 215 ~~~l~~mk~ga~lIn~ 230 (313)
++.++.||+|++|+-.
T Consensus 90 ~eil~~MK~GaiL~f~ 105 (335)
T PRK13403 90 AEVEENLREGQMLLFS 105 (335)
T ss_pred HHHHhcCCCCCEEEEC
Confidence 9999999999988653
No 33
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=99.51 E-value=4.6e-14 Score=135.40 Aligned_cols=115 Identities=22% Similarity=0.256 Sum_probs=98.9
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~ 215 (313)
.+.|++++|+|+|.||+.+|++++++|++|+++++++.+. .++. ..+++++++.+|+|+.+.. +.++++.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~-v~~leeal~~aDVVItaTG----~~~vI~~ 266 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFR-VMTMEEAAKIGDIFITATG----NKDVIRG 266 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCE-eCCHHHHHhcCCEEEECCC----CHHHHHH
Confidence 4799999999999999999999999999999998776432 1232 3467889999999987654 6778889
Q ss_pred HHHhccCCCcEEEEcCCCcc-ccHHHHHHHHHhCCeeEEEecCCCC
Q 021388 216 EVIDALGPKGVLINIGRGPH-VDERELVSALVEGRLGGAGLDVFEN 260 (313)
Q Consensus 216 ~~l~~mk~ga~lIn~~rg~~-vd~~al~~al~~~~l~ga~lDV~~~ 260 (313)
+.+..||+|++++|+||+.+ +|.++|.+++.+.+..+..+|+|.-
T Consensus 267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 99999999999999999998 9999999999887777789999864
No 34
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.39 E-value=1.4e-12 Score=120.68 Aligned_cols=109 Identities=14% Similarity=0.260 Sum_probs=92.0
Q ss_pred EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhccc-C-HHHH
Q 021388 146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHII-N-REVI 218 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li-~-~~~l 218 (313)
+|||||+|.||+.+|+.|...|++|.+|||+++.. .+.....+..+++++||+|++|+|.++.++.++ . ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 48999999999999999999999999999987532 233345678899999999999999888877765 3 3467
Q ss_pred hccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEec
Q 021388 219 DALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD 256 (313)
Q Consensus 219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lD 256 (313)
..+++|+++||+++..+.+.+++.+.++++.+. .+|
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~--~~~ 116 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID--YLD 116 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEe
Confidence 889999999999999999999999999988766 444
No 35
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.38 E-value=1.8e-12 Score=120.46 Aligned_cols=111 Identities=14% Similarity=0.251 Sum_probs=95.3
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccC--HHH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIIN--REV 217 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~--~~~ 217 (313)
++|||||+|.||.++|+.|...|++|.+||++++.. .+.....+..++++++|+|++|+|.....+.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 479999999999999999999999999999987642 2334566888999999999999998877777763 356
Q ss_pred HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388 218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV 257 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV 257 (313)
++.+++|.++||++++.+...+.+.+.+.++.+. .+|.
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda 119 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV 119 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 7789999999999999999999999999999887 5664
No 36
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.38 E-value=2.6e-12 Score=119.60 Aligned_cols=110 Identities=24% Similarity=0.337 Sum_probs=94.2
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhc---CCEEEEecCCChhhhcccCHH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASN---CHILVVACPLTEETRHIINRE 216 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~---aDvV~~~lp~~~~t~~li~~~ 216 (313)
++|||||+|.||..+|++|...|++|.+|||+++.. .+.....+.++++++ +|+|++|+|..+.++.++ .+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~ 79 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KD 79 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HH
Confidence 379999999999999999999999999999986532 234456688888876 699999999887888887 56
Q ss_pred HHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388 217 VIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV 257 (313)
Q Consensus 217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV 257 (313)
.++.+++|.++||+++....+..++.+.+.+..+. .+|.
T Consensus 80 i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vda 118 (299)
T PRK12490 80 LYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVDC 118 (299)
T ss_pred HhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEeC
Confidence 78889999999999999999999999999988876 5773
No 37
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.38 E-value=2.3e-12 Score=119.59 Aligned_cols=118 Identities=20% Similarity=0.336 Sum_probs=96.5
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccC--HHH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIIN--REV 217 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~--~~~ 217 (313)
++|||||+|.||+.+|+.+...|++|.+||+++.... +.....+++++++++|+|++|+|.+.+++.++. .+.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 5799999999999999999999999999999875321 233456788999999999999998888787763 347
Q ss_pred HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCC
Q 021388 218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEP 262 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep 262 (313)
++.+++|.++||+++..+...+++.+.+.+.++...-..|+..+|
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 788999999999999999999999999998877633334554444
No 38
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.36 E-value=2.5e-12 Score=126.59 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=99.9
Q ss_pred EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc---------ccc---cCCCHHHHhhc---CCEEEEecCCChhhh
Q 021388 146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL---------KYK---YYPSVVELASN---CHILVVACPLTEETR 210 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~---------~~~---~~~~l~e~~~~---aDvV~~~lp~~~~t~ 210 (313)
+|||||+|.||+.||++|...|++|.+|||++++.. +.. ...+++++++. +|+|++++|..+.++
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 699999999999999999999999999999876321 222 45688888876 999999999999999
Q ss_pred cccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCC
Q 021388 211 HIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEP 262 (313)
Q Consensus 211 ~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep 262 (313)
.++ ...++.+++|.++||+|+...-+...+.+.+++..+.....-|...++
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~ 138 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE 138 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence 988 678899999999999999999999999999999999855555665555
No 39
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=99.34 E-value=2.7e-12 Score=123.91 Aligned_cols=152 Identities=22% Similarity=0.277 Sum_probs=111.6
Q ss_pred EEcCcCCCcC-ChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEE
Q 021388 72 SSFSVGLDKV-DMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGII 150 (313)
Q Consensus 72 ~~~~~G~d~i-d~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igii 150 (313)
=-+++|+..+ .+....+.+++|.|++..+.++.-|...+.-.+....+. +. ....+.|++++|+
T Consensus 154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~------ra---------t~~~l~Gk~VlVi 218 (425)
T PRK05476 154 EETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIK------RA---------TNVLIAGKVVVVA 218 (425)
T ss_pred ecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHH------Hh---------ccCCCCCCEEEEE
Confidence 3457887766 344444578999999998887755533222222211110 00 1234799999999
Q ss_pred cCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCc
Q 021388 151 GLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKG 225 (313)
Q Consensus 151 G~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga 225 (313)
|+|.||+.+|++++++|++|+++|+++.... ++. ..+++++++.+|+|+.+.. +.++++.+.+..||+|+
T Consensus 219 G~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~-v~~l~eal~~aDVVI~aTG----~~~vI~~~~~~~mK~Ga 293 (425)
T PRK05476 219 GYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFR-VMTMEEAAELGDIFVTATG----NKDVITAEHMEAMKDGA 293 (425)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCE-ecCHHHHHhCCCEEEECCC----CHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999998775422 222 3468899999999988753 56688889999999999
Q ss_pred EEEEcCCCcc-ccHHHHHH
Q 021388 226 VLINIGRGPH-VDERELVS 243 (313)
Q Consensus 226 ~lIn~~rg~~-vd~~al~~ 243 (313)
+++|+|+... +|.++|.+
T Consensus 294 iliNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 294 ILANIGHFDNEIDVAALEE 312 (425)
T ss_pred EEEEcCCCCCccChHHHhh
Confidence 9999999876 77777754
No 40
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.32 E-value=8.1e-12 Score=116.33 Aligned_cols=110 Identities=25% Similarity=0.290 Sum_probs=94.2
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhc---CCEEEEecCCChhhhcccCHH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASN---CHILVVACPLTEETRHIINRE 216 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~---aDvV~~~lp~~~~t~~li~~~ 216 (313)
++|||||+|.||+.+|++|...|++|.+||++++.. .+.....+.+++++. +|+|++++|..+.+..++ ..
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~ 79 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE 79 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence 379999999999999999999999999999987532 234455678888875 699999999877777777 56
Q ss_pred HHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388 217 VIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV 257 (313)
Q Consensus 217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV 257 (313)
.+..+++|.++||++++......++.+.+++.++. .+|+
T Consensus 80 l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301)
T PRK09599 80 LAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301)
T ss_pred HHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence 77889999999999999999999999999999887 5674
No 41
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=99.30 E-value=6.1e-12 Score=114.11 Aligned_cols=114 Identities=17% Similarity=0.279 Sum_probs=100.9
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhccc--C
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHII--N 214 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li--~ 214 (313)
.+.++||+||+|+||..|+..|.+.|++|++|||+.++. .|+....+..|+.++||+|+.++|...+.+.++ .
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 457899999999999999999999999999999988753 356677899999999999999999999999887 4
Q ss_pred HHHHhccCCCcEE-EEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388 215 REVIDALGPKGVL-INIGRGPHVDERELVSALVEGRLGGAGLDV 257 (313)
Q Consensus 215 ~~~l~~mk~ga~l-In~~rg~~vd~~al~~al~~~~l~ga~lDV 257 (313)
...|+.+++|... ||.++.+..-...+.++++....+ .+|.
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vDA 154 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVDA 154 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEec
Confidence 5578888898887 999999999999999999999887 6664
No 42
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=99.30 E-value=4.9e-12 Score=106.29 Aligned_cols=100 Identities=19% Similarity=0.295 Sum_probs=72.8
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIIN 214 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~ 214 (313)
..+.||++.|+|||.+|+.+|+.|+++|++|.+++..+-.. .+++ ..+++++++++|+++.+.. .+.++.
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~-v~~~~~a~~~adi~vtaTG----~~~vi~ 93 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFE-VMTLEEALRDADIFVTATG----NKDVIT 93 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-E-EE-HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcE-ecCHHHHHhhCCEEEECCC----CccccC
Confidence 35899999999999999999999999999999999877532 2333 3479999999999988875 467889
Q ss_pred HHHHhccCCCcEEEEcCCCcc-ccHHHHHHH
Q 021388 215 REVIDALGPKGVLINIGRGPH-VDERELVSA 244 (313)
Q Consensus 215 ~~~l~~mk~ga~lIn~~rg~~-vd~~al~~a 244 (313)
.+.|.+||+|+++.|++.... +|-+.|.+.
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~~ 124 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDVEIDVDALEAN 124 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTTSBTHHHHHTC
T ss_pred HHHHHHhcCCeEEeccCcCceeEeecccccc
Confidence 999999999999999998655 666555443
No 43
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.28 E-value=1.7e-11 Score=113.80 Aligned_cols=110 Identities=14% Similarity=0.184 Sum_probs=93.3
Q ss_pred EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----cccccCCCHHHHhhcCCEEEEecCCChhhhcccC--HHHHh
Q 021388 146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----LKYKYYPSVVELASNCHILVVACPLTEETRHIIN--REVID 219 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~--~~~l~ 219 (313)
+|||||+|+||..+|++|...|++|.+||+++... .+.....+..++++++|+|++|+|..++.+.++. ...++
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence 79999999999999999999999999999876421 2334456888999999999999998888887763 24677
Q ss_pred ccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388 220 ALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV 257 (313)
Q Consensus 220 ~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV 257 (313)
.+++|.++||+++...-+.+.+.+.+.+.... .+|.
T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vda 117 (292)
T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLDA 117 (292)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEEe
Confidence 78999999999999999999999999998876 6664
No 44
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.22 E-value=5e-11 Score=117.12 Aligned_cols=117 Identities=20% Similarity=0.253 Sum_probs=97.8
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc---------c--cccCCCHHHHhh---cCCEEEEecCCChhhh
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL---------K--YKYYPSVVELAS---NCHILVVACPLTEETR 210 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~---------~--~~~~~~l~e~~~---~aDvV~~~lp~~~~t~ 210 (313)
.+|||||+|.||.++|++|...|++|.+|||+++... + .....+++++++ ++|+|++++|....++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 4799999999999999999999999999999876411 2 224568888886 5899999999888888
Q ss_pred cccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCC
Q 021388 211 HIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEP 262 (313)
Q Consensus 211 ~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep 262 (313)
.++ +++++.+++|.++||++.+...|...+.+.+.+..+.....-|...++
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 888 668889999999999999999999999999999999833333454443
No 45
>PLN02858 fructose-bisphosphate aldolase
Probab=99.21 E-value=4.9e-11 Score=130.06 Aligned_cols=113 Identities=16% Similarity=0.179 Sum_probs=99.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhccc--CH
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHII--NR 215 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li--~~ 215 (313)
..++||+||+|.||..||++|...|++|.+|||++... .+...+.+..|+.++||+|++|+|..++++.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 35789999999999999999999999999999987642 245567899999999999999999999988887 45
Q ss_pred HHHhccCCCcEEEEcCCCccccHHHHHHHHHhCC--eeEEEecC
Q 021388 216 EVIDALGPKGVLINIGRGPHVDERELVSALVEGR--LGGAGLDV 257 (313)
Q Consensus 216 ~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~--l~ga~lDV 257 (313)
..++.+++|.++||+|+..+-..+.+.+.+.+.. +. .+|.
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~--~lDa 124 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIF--LVDA 124 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceE--EEEc
Confidence 6888899999999999999999999999999887 65 6675
No 46
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.18 E-value=1.5e-10 Score=107.77 Aligned_cols=109 Identities=21% Similarity=0.258 Sum_probs=89.9
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHH---hhcCCEEEEecCCChhhhcccCHH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVEL---ASNCHILVVACPLTEETRHIINRE 216 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~---~~~aDvV~~~lp~~~~t~~li~~~ 216 (313)
++|||||+|.||..+|+.|...|++|.+|||+++... +.....+++++ +.++|+|++++|.. .++.++ ++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 4799999999999999999999999999999876321 22233456554 45689999999977 777777 56
Q ss_pred HHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388 217 VIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV 257 (313)
Q Consensus 217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV 257 (313)
..+.+++|.++||++.+...+...+.+.+++..+. .+|.
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~--~vda 117 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH--LLDC 117 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe--EEec
Confidence 78889999999999999999999999999988877 5664
No 47
>PLN02858 fructose-bisphosphate aldolase
Probab=99.14 E-value=1.5e-10 Score=126.19 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=96.7
Q ss_pred CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhccc--CHH
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHII--NRE 216 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li--~~~ 216 (313)
.++|||||+|.||.+||++|...|++|.+||+++... .+.....+..+++++||+|++|+|..++++.++ ...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 4789999999999999999999999999999987542 233346788999999999999999988888887 456
Q ss_pred HHhccCCCcEEEEcCCCccccHHHHHHHHHh--CCeeEEEecC
Q 021388 217 VIDALGPKGVLINIGRGPHVDERELVSALVE--GRLGGAGLDV 257 (313)
Q Consensus 217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~~--~~l~ga~lDV 257 (313)
.++.+++|.++||+++.++-..+.+.+.+.+ ..+. .+|.
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~--~lDA 444 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIK--LVDA 444 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcE--EEEc
Confidence 7888999999999999999999999999998 6665 5664
No 48
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.14 E-value=1.4e-10 Score=107.29 Aligned_cols=107 Identities=15% Similarity=0.168 Sum_probs=90.0
Q ss_pred EEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccC--HHHHhcc
Q 021388 149 IIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIIN--REVIDAL 221 (313)
Q Consensus 149 iiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~--~~~l~~m 221 (313)
|||+|.||.++|+.|...|++|.+|||+++.. .+.....+..++++++|+|++|+|...+.+.++. .+.++.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999987632 2334456889999999999999998777777762 5677789
Q ss_pred CCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388 222 GPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV 257 (313)
Q Consensus 222 k~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV 257 (313)
++|.++||++..++-..+.+.+.+++..+. .+|.
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vda 114 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMDA 114 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEC
Confidence 999999999999988889999999887776 5663
No 49
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.13 E-value=1.1e-10 Score=109.24 Aligned_cols=91 Identities=21% Similarity=0.260 Sum_probs=73.9
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------cccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------LKYKYYPSVVELASNCHILVVACPLTEETRHII 213 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li 213 (313)
..+.|++|||||+|+||+++|+.|+.+|++|.++++..... .++. ..+.++++++||+|++++|.+.. ..++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~-~~s~~eaa~~ADVVvLaVPd~~~-~~V~ 90 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFE-VLTVAEAAKWADVIMILLPDEVQ-AEVY 90 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCe-eCCHHHHHhcCCEEEEcCCHHHH-HHHH
Confidence 35899999999999999999999999999999887654321 2333 34789999999999999997655 6677
Q ss_pred CHHHHhccCCCcEEEEcCCC
Q 021388 214 NREVIDALGPKGVLINIGRG 233 (313)
Q Consensus 214 ~~~~l~~mk~ga~lIn~~rg 233 (313)
+++.++.|++|+++ -.+.|
T Consensus 91 ~~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 91 EEEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHHhcCCCCCEE-EECCC
Confidence 77888999999988 54555
No 50
>PLN02256 arogenate dehydrogenase
Probab=99.11 E-value=1.1e-09 Score=102.01 Aligned_cols=105 Identities=14% Similarity=0.252 Sum_probs=79.9
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----cccccCCCHHHHh-hcCCEEEEecCCChhhhcccCHH
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----LKYKYYPSVVELA-SNCHILVVACPLTEETRHIINRE 216 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~e~~-~~aDvV~~~lp~~~~t~~li~~~ 216 (313)
-.+++|||||+|.||+.+|+.++..|++|.+|+++.... .+.....+.++++ .++|+|++|+|. ..+..++.+-
T Consensus 34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~l 112 (304)
T PLN02256 34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRSL 112 (304)
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHhh
Confidence 466799999999999999999999999999999875321 1233345777776 479999999994 3566666332
Q ss_pred HHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388 217 VIDALGPKGVLINIGRGPHVDERELVSALVE 247 (313)
Q Consensus 217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~~ 247 (313)
....++++++++|++..+-+..+++.+.+..
T Consensus 113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~ 143 (304)
T PLN02256 113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE 143 (304)
T ss_pred hhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence 2567899999999999776666667666644
No 51
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.11 E-value=1.9e-10 Score=112.94 Aligned_cols=109 Identities=16% Similarity=0.193 Sum_probs=91.5
Q ss_pred EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc--------c--cccCCCHHHHh---hcCCEEEEecCCChhhhcc
Q 021388 146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL--------K--YKYYPSVVELA---SNCHILVVACPLTEETRHI 212 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------~--~~~~~~l~e~~---~~aDvV~~~lp~~~~t~~l 212 (313)
.|||||+|.||+.||++|...|++|.+|||+++... + .....++++++ +++|+|++++|..+.+..+
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 389999999999999999999999999999876321 1 22345677766 4689999999988888888
Q ss_pred cCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388 213 INREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV 257 (313)
Q Consensus 213 i~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV 257 (313)
+ .++++.+++|.++||++.....|...+.+.+.+..+. .+|+
T Consensus 81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~--fvda 122 (467)
T TIGR00873 81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGIL--FVGS 122 (467)
T ss_pred H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCE--EEcC
Confidence 7 5688889999999999999999999999999999887 5554
No 52
>PLN02712 arogenate dehydrogenase
Probab=99.09 E-value=2.8e-10 Score=116.38 Aligned_cols=109 Identities=14% Similarity=0.271 Sum_probs=84.2
Q ss_pred ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----cccccCCCHHHHhh-cCCEEEEecCCChhhhccc
Q 021388 139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----LKYKYYPSVVELAS-NCHILVVACPLTEETRHII 213 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~e~~~-~aDvV~~~lp~~~~t~~li 213 (313)
+.++.+++|||||+|.||+.+|+.++.+|++|.+||++.... .+.....++++++. .+|+|++|+|. ..+..++
T Consensus 364 ~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi 442 (667)
T PLN02712 364 VNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL 442 (667)
T ss_pred cCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH
Confidence 456788999999999999999999999999999999875421 23333567888776 59999999994 5677777
Q ss_pred CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388 214 NREVIDALGPKGVLINIGRGPHVDERELVSALVEG 248 (313)
Q Consensus 214 ~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~ 248 (313)
.+-....||+|++++|++.++-...+.+.+.+..+
T Consensus 443 ~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~ 477 (667)
T PLN02712 443 KSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQD 477 (667)
T ss_pred HHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCC
Confidence 55444479999999999999855556666555443
No 53
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.07 E-value=2.3e-10 Score=110.31 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=81.3
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIIN 214 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~ 214 (313)
..+.|++++|+|+|.||+.+++.++++|++|+++|+++.+. .++. ..++++.++.+|+|+.+.. +.++++
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~-~~~~~e~v~~aDVVI~atG----~~~~i~ 272 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYE-VMTMEEAVKEGDIFVTTTG----NKDIIT 272 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCE-EccHHHHHcCCCEEEECCC----CHHHHH
Confidence 35799999999999999999999999999999998876532 2332 2356788899999988754 456788
Q ss_pred HHHHhccCCCcEEEEcCCCcc-ccHHHHHH
Q 021388 215 REVIDALGPKGVLINIGRGPH-VDERELVS 243 (313)
Q Consensus 215 ~~~l~~mk~ga~lIn~~rg~~-vd~~al~~ 243 (313)
.+.+..||+|++++|+|++.+ +|..+|..
T Consensus 273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 888999999999999999876 77777664
No 54
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.06 E-value=8e-10 Score=107.60 Aligned_cols=129 Identities=16% Similarity=0.223 Sum_probs=93.2
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----ccc----------------cCCCHHHHhhcCCEEEEecC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----KYK----------------YYPSVVELASNCHILVVACP 204 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----~~~----------------~~~~l~e~~~~aDvV~~~lp 204 (313)
++|||||+|.||..+|..+.. |++|++||+++.+.. +.. .+++..+.+++||++++|+|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 689999999999999999877 799999999876321 110 12333456889999999999
Q ss_pred CCh------hhhccc--CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC--CeeEEEec----CCCCCCCCCC----
Q 021388 205 LTE------ETRHII--NREVIDALGPKGVLINIGRGPHVDERELVSALVEG--RLGGAGLD----VFENEPHVPE---- 266 (313)
Q Consensus 205 ~~~------~t~~li--~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~--~l~ga~lD----V~~~Ep~~~~---- 266 (313)
... +...+. .+...+.+++|.++|+.|+..+-..+.+++.+.+. ++. ..| +|.+||..+.
T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~--~~~~~~~~~~PE~v~~G~a~~ 163 (425)
T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMT--FNQDFYVGYSPERINPGDKKH 163 (425)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCC--cCCCeeEeeCCCcCCCCcccc
Confidence 662 334444 34677889999999999999998888765554432 332 233 4678987653
Q ss_pred cccCCCceEE
Q 021388 267 ELFGLENVVL 276 (313)
Q Consensus 267 ~L~~~pnv~l 276 (313)
.+...|+++.
T Consensus 164 ~~~~~~riv~ 173 (425)
T PRK15182 164 RLTNIKKITS 173 (425)
T ss_pred cccCCCeEEE
Confidence 4677777754
No 55
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.02 E-value=3.2e-09 Score=103.83 Aligned_cols=137 Identities=18% Similarity=0.239 Sum_probs=97.4
Q ss_pred CEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCc------cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 145 KTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPN------LKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
++|+||| +|.||+.+|+.|+..|++|.+|++++... .+.....+..+.+.++|+|++|+|.. .+..++ ++.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~-~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPIN-VTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHH-HHHHHH-HHH
Confidence 4799997 99999999999999999999999876532 12333457788899999999999953 445555 667
Q ss_pred HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCC--CCCcccCCCceEEccCCCCCcHHHHHH
Q 021388 218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPH--VPEELFGLENVVLMPHVGSGTVETRKT 290 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~--~~~~L~~~pnv~lTPH~a~~t~~~~~~ 290 (313)
.+.++++++++|++.......+++.+.+..+ .. .+.. -|. +..+++.-..++++|+-. .+.+...+
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~-~~--~V~~---HPmaGp~~~~~~g~~~il~p~~~-~~~~~~~~ 146 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEG-VE--ILPT---HPMFGPRTPSLKGQVVILTPTEK-RSNPWFDK 146 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCC-CE--EEEc---CCCCCCCCcccCCCEEEEecCCC-CCHHHHHH
Confidence 7789999999999987666666666665432 22 2222 333 223577778899999652 33444333
No 56
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.02 E-value=3.3e-09 Score=98.48 Aligned_cols=99 Identities=19% Similarity=0.210 Sum_probs=76.4
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c------------cccCCCHHHHhhcC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K------------YKYYPSVVELASNC 196 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~------------~~~~~~l~e~~~~a 196 (313)
++|||||+|.||.++|+.+...|++|.+||++++... + .....+..+.+++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 6899999999999999999999999999998765321 0 01122223568999
Q ss_pred CEEEEecCCChhhhcccCHHHHhccCCCcEEE-EcCCCccccHHHHHHHHH
Q 021388 197 HILVVACPLTEETRHIINREVIDALGPKGVLI-NIGRGPHVDERELVSALV 246 (313)
Q Consensus 197 DvV~~~lp~~~~t~~li~~~~l~~mk~ga~lI-n~~rg~~vd~~al~~al~ 246 (313)
|+|+.|+|..++.+..+-++..+.++++++|+ |+|..+ ...+.+.+.
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~ 132 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ 132 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence 99999999999988887777778899999886 777664 344555554
No 57
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=98.96 E-value=4.7e-09 Score=96.72 Aligned_cols=136 Identities=19% Similarity=0.252 Sum_probs=87.1
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cc-ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KY-KYYPSVVELASNCHILVVACPLTEETRHIINREVI 218 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~-~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l 218 (313)
++|||||+|.||+++|+.|+..|++|.+||++++... +. ....+..+.++++|+|++|+|... ...++ ++..
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~ 78 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLI 78 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHH
Confidence 3799999999999999999999999999998765321 11 112222356789999999999433 33333 6677
Q ss_pred hccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEec---CCCCCCCCC----CcccCCCceEEccCCCCCcHHHHH
Q 021388 219 DALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD---VFENEPHVP----EELFGLENVVLMPHVGSGTVETRK 289 (313)
Q Consensus 219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lD---V~~~Ep~~~----~~L~~~pnv~lTPH~a~~t~~~~~ 289 (313)
+.++++++++|++.-..- ..+++...... .+. ++..|.-.. ..|+.-.++++||+-.+ +.+..+
T Consensus 79 ~~l~~~~ii~d~~Svk~~----~~~~~~~~~~~--~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~-~~~~~~ 149 (279)
T PRK07417 79 PALPPEAIVTDVGSVKAP----IVEAWEKLHPR--FVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENT-DLNALA 149 (279)
T ss_pred HhCCCCcEEEeCcchHHH----HHHHHHHhhCC--ceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCC-CHHHHH
Confidence 788999999999876532 33333332212 222 222221110 12677788999997553 344333
No 58
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.96 E-value=2.7e-09 Score=99.71 Aligned_cols=82 Identities=23% Similarity=0.398 Sum_probs=68.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHh-cc
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVID-AL 221 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~-~m 221 (313)
.+++|||||+|.||+++|++|...|++|.+|+|+.. .+++++++++|+|++++|. +..+.++ ++... .+
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------~~~~~~~~~advvi~~vp~-~~~~~v~-~~l~~~~~ 72 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------LSLAAVLADADVIVSAVSM-KGVRPVA-EQVQALNL 72 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------CCHHHHHhcCCEEEEECCh-HHHHHHH-HHHHHhcC
Confidence 457899999999999999999999999999999753 4688899999999999997 4666666 33333 47
Q ss_pred CCCcEEEEcCCCc
Q 021388 222 GPKGVLINIGRGP 234 (313)
Q Consensus 222 k~ga~lIn~~rg~ 234 (313)
++++++|++++|-
T Consensus 73 ~~~~ivi~~s~gi 85 (308)
T PRK14619 73 PPETIIVTATKGL 85 (308)
T ss_pred CCCcEEEEeCCcc
Confidence 8899999998853
No 59
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.96 E-value=1e-08 Score=94.86 Aligned_cols=110 Identities=11% Similarity=0.106 Sum_probs=81.2
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc-----------------------------cccCCCHHHHhhc
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK-----------------------------YKYYPSVVELASN 195 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~-----------------------------~~~~~~l~e~~~~ 195 (313)
++|+|||+|.||..+|..+...|++|.+||++++.... .....++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 57999999999999999999999999999987653110 1124567788999
Q ss_pred CCEEEEecCCChhhhcccCHHHHhccCCCcEE-EEcCCCccccHHHHHHHHHhCCeeEEEecCC
Q 021388 196 CHILVVACPLTEETRHIINREVIDALGPKGVL-INIGRGPHVDERELVSALVEGRLGGAGLDVF 258 (313)
Q Consensus 196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~l-In~~rg~~vd~~al~~al~~~~l~ga~lDV~ 258 (313)
||+|+.|+|...+.+..+-.+..+.+++++++ +|+|..++ ..+.+.++. .-+..++..+
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~ 141 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF 141 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence 99999999988777666556677788999876 78888554 445555543 2222355555
No 60
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=4.4e-09 Score=92.75 Aligned_cols=111 Identities=23% Similarity=0.263 Sum_probs=96.2
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC-----ccccccCCCHHHH---hhcCCEEEEecCCChhhhcccCHH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP-----NLKYKYYPSVVEL---ASNCHILVVACPLTEETRHIINRE 216 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~-----~~~~~~~~~l~e~---~~~aDvV~~~lp~~~~t~~li~~~ 216 (313)
++||.||+|+||..++++++..|++|.+||+++.. ..++....+++++ +....+|.+++|...-|..++ ++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence 47999999999999999999999999999998763 2344456677775 456789999999887777776 77
Q ss_pred HHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCC
Q 021388 217 VIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVF 258 (313)
Q Consensus 217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~ 258 (313)
+.+.|.+|-++||-+...--|.....+.|.++.+. .+||=
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~G 119 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVG 119 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEecc
Confidence 88999999999999999999999999999999998 89984
No 61
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.93 E-value=1.5e-08 Score=98.54 Aligned_cols=104 Identities=15% Similarity=0.195 Sum_probs=78.4
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc----c--ccCCCHHHH---------------hhcCCEEEEec
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK----Y--KYYPSVVEL---------------ASNCHILVVAC 203 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~----~--~~~~~l~e~---------------~~~aDvV~~~l 203 (313)
++|+|||+|.||..+|..|+..|++|++||++++.... . .....++++ +++||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 68999999999999999999999999999998763221 0 011234443 23799999999
Q ss_pred CCC------hhhhccc--CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388 204 PLT------EETRHII--NREVIDALGPKGVLINIGRGPHVDERELVSALVEG 248 (313)
Q Consensus 204 p~~------~~t~~li--~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~ 248 (313)
|.. ++...+. -++..+.+++|+++|+.|+..+-..+.+...+.+.
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEA 136 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHh
Confidence 964 1112221 25677889999999999999998899988878764
No 62
>PLN02712 arogenate dehydrogenase
Probab=98.91 E-value=1.1e-08 Score=104.80 Aligned_cols=104 Identities=15% Similarity=0.254 Sum_probs=76.3
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC----ccccccCCCHHHHh-hcCCEEEEecCCChhhhcccCHH
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP----NLKYKYYPSVVELA-SNCHILVVACPLTEETRHIINRE 216 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~----~~~~~~~~~l~e~~-~~aDvV~~~lp~~~~t~~li~~~ 216 (313)
-+.++|||||+|.||+.+|+.++.+|++|.+||++... ..+.....++++++ .++|+|++|+|. ..+..++.+-
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~l 128 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKSL 128 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHhh
Confidence 45578999999999999999999999999999987432 12333455777865 569999999994 4567777553
Q ss_pred HHhccCCCcEEEEcCCCccccHHHHHHHHH
Q 021388 217 VIDALGPKGVLINIGRGPHVDERELVSALV 246 (313)
Q Consensus 217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~ 246 (313)
.+..+++|++|+|++.-+..-.+++.+.+.
T Consensus 129 ~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~ 158 (667)
T PLN02712 129 PLQRLKRNTLFVDVLSVKEFAKNLLLDYLP 158 (667)
T ss_pred hhhcCCCCeEEEECCCCcHHHHHHHHHhcC
Confidence 346789999999998665333334444443
No 63
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=98.90 E-value=1.9e-08 Score=92.53 Aligned_cols=141 Identities=21% Similarity=0.296 Sum_probs=94.5
Q ss_pred CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC--c-----ccc--ccCCCH-HHHhhcCCEEEEecCCChhhhccc
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP--N-----LKY--KYYPSV-VELASNCHILVVACPLTEETRHII 213 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~--~-----~~~--~~~~~l-~e~~~~aDvV~~~lp~~~~t~~li 213 (313)
.++|+|+|+|.||+.+|+.++..|+.|.+++++... . .+. ....+. .+....+|+|++++|-. .+..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~-~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIE-ATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHH-HHHHHH
Confidence 468999999999999999999999987555544332 1 121 111233 56778899999999954 344454
Q ss_pred CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCC----CCcccCCCceEEccCCCCCcHHHHH
Q 021388 214 NREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHV----PEELFGLENVVLMPHVGSGTVETRK 289 (313)
Q Consensus 214 ~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~----~~~L~~~pnv~lTPH~a~~t~~~~~ 289 (313)
+++...+|+|++++|++.-.---.+++.+.+.++. . +...-|+- ..+++..-.+++||.-... .+...
T Consensus 82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~-----~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~-~~~~~ 153 (279)
T COG0287 82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-R-----FVGGHPMFGPEADAGLFENAVVVLTPSEGTE-KEWVE 153 (279)
T ss_pred -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-e-----eEecCCCCCCcccccccCCCEEEEcCCCCCC-HHHHH
Confidence 66777899999999999887555555555554432 2 22334432 2368888899999964433 44444
Q ss_pred HHHH
Q 021388 290 TMAD 293 (313)
Q Consensus 290 ~~~~ 293 (313)
++.+
T Consensus 154 ~~~~ 157 (279)
T COG0287 154 EVKR 157 (279)
T ss_pred HHHH
Confidence 4433
No 64
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.90 E-value=2.7e-09 Score=89.45 Aligned_cols=86 Identities=21% Similarity=0.281 Sum_probs=62.5
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC------ccccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP------NLKYKYYPSVVELASNCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~------~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~ 215 (313)
|++|+|+|||||+.|++.|.+|+..|.+|++-.|...+ ..|+. ..+..|.+++||+|++.+|+.. ...++.+
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~-v~~~~eAv~~aDvV~~L~PD~~-q~~vy~~ 79 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFE-VMSVAEAVKKADVVMLLLPDEV-QPEVYEE 79 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-E-CCEHHHHHHC-SEEEE-S-HHH-HHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCe-eccHHHHHhhCCEEEEeCChHH-HHHHHHH
Confidence 67999999999999999999999999999988776542 22343 4579999999999999999543 3446678
Q ss_pred HHHhccCCCcEEEE
Q 021388 216 EVIDALGPKGVLIN 229 (313)
Q Consensus 216 ~~l~~mk~ga~lIn 229 (313)
+....||+|+.++=
T Consensus 80 ~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 80 EIAPNLKPGATLVF 93 (165)
T ss_dssp HHHHHS-TT-EEEE
T ss_pred HHHhhCCCCCEEEe
Confidence 88899999998754
No 65
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=98.90 E-value=4.5e-09 Score=98.33 Aligned_cols=90 Identities=21% Similarity=0.231 Sum_probs=68.3
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC-C-----ccccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK-P-----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~-~-----~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~ 215 (313)
|+|++|||||+|+||+++|+.|+.+|++|+++++... . ..++. ..+..+++++||+|++++|...+ ...+.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~-~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~ 78 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFK-VGTVEEAIPQADLIMNLLPDEVQ-HEVYEA 78 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCE-ECCHHHHHhcCCEEEEeCCcHhH-HHHHHH
Confidence 5789999999999999999999999999876654332 1 12333 34688889999999999994433 344556
Q ss_pred HHHhccCCCcEEEEcCCCc
Q 021388 216 EVIDALGPKGVLINIGRGP 234 (313)
Q Consensus 216 ~~l~~mk~ga~lIn~~rg~ 234 (313)
+....++++. +|.++-|=
T Consensus 79 ei~~~l~~g~-iVs~aaG~ 96 (314)
T TIGR00465 79 EIQPLLKEGK-TLGFSHGF 96 (314)
T ss_pred HHHhhCCCCc-EEEEeCCc
Confidence 6778888886 78887774
No 66
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=98.89 E-value=1.1e-08 Score=95.61 Aligned_cols=141 Identities=18% Similarity=0.247 Sum_probs=90.8
Q ss_pred CCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCcc-----cc--ccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNL-----KY--KYYPSVVELASNCHILVVACPLTEETRHIIN 214 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~-----~~--~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~ 214 (313)
.++|+|||+|.||..+|+.++..|. +|.+||++++... +. ....+.++.++++|+|++|+|... ...++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~-~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGA-SGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHH-HHHHH-
Confidence 4689999999999999999998885 7999999865311 21 123467788899999999999532 33333
Q ss_pred HHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC---CCCCCC---CC-CcccCCCceEEccCCCCCcHHH
Q 021388 215 REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV---FENEPH---VP-EELFGLENVVLMPHVGSGTVET 287 (313)
Q Consensus 215 ~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV---~~~Ep~---~~-~~L~~~pnv~lTPH~a~~t~~~ 287 (313)
++....++++.++++++..+.-..+++.+.+.. .+. .++. +..|-. .. .+|++-.+++++|+-++ +.+.
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~--~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~-~~~~ 159 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVH--FIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT-DPAA 159 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCe--EEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC-CHHH
Confidence 556677899999999977653223333333322 222 3332 222211 11 25667778899996543 4444
Q ss_pred HHH
Q 021388 288 RKT 290 (313)
Q Consensus 288 ~~~ 290 (313)
.+.
T Consensus 160 ~~~ 162 (307)
T PRK07502 160 VAR 162 (307)
T ss_pred HHH
Confidence 443
No 67
>PRK06545 prephenate dehydrogenase; Validated
Probab=98.89 E-value=2.4e-08 Score=95.39 Aligned_cols=137 Identities=20% Similarity=0.242 Sum_probs=91.8
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc----cCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK----YYPSVVELASNCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~----~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~ 215 (313)
++|+|||+|.||+++|+.++..|++|.+|++++.... +.. ...++++++++||+|++|+|.. .+..++ +
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~-~~~~vl-~ 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVD-ATAALL-A 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHH-HHHHHH-H
Confidence 4799999999999999999999999888887655321 111 2346788899999999999953 455555 4
Q ss_pred HHHh-ccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCC----------CcccCCCceEEccCCCCCc
Q 021388 216 EVID-ALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVP----------EELFGLENVVLMPHVGSGT 284 (313)
Q Consensus 216 ~~l~-~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~----------~~L~~~pnv~lTPH~a~~t 284 (313)
+... .++++++++|++.-+.-..+++.+.+. .... .++.+ |.+. ..|+.....++||+-.. +
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~-~~~~--~ig~H---PMaG~e~sG~~aa~~~lf~g~~~il~~~~~~-~ 151 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLG-DLIR--FVGGH---PMAGSHKSGVAAARADLFENAPWVLTPDDHT-D 151 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcC-CCCe--EEeeC---CcCcCchhhHHHhcHHHHCCCcEEEecCCCC-C
Confidence 4544 488999999999877544444444322 2222 33432 4322 14677777899997543 3
Q ss_pred HHHHHH
Q 021388 285 VETRKT 290 (313)
Q Consensus 285 ~~~~~~ 290 (313)
.+..+.
T Consensus 152 ~~~~~~ 157 (359)
T PRK06545 152 PDAVAE 157 (359)
T ss_pred HHHHHH
Confidence 344433
No 68
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=98.88 E-value=3.9e-09 Score=98.02 Aligned_cols=98 Identities=21% Similarity=0.312 Sum_probs=83.2
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~ 215 (313)
-+.||++.|.|||.+|+.+|++++++|++|++.+..+-... |+. ...+++....+|+++.+.. ++++|..
T Consensus 206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~-V~~m~~Aa~~gDifiT~TG----nkdVi~~ 280 (420)
T COG0499 206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFR-VMTMEEAAKTGDIFVTATG----NKDVIRK 280 (420)
T ss_pred eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcE-EEEhHHhhhcCCEEEEccC----CcCccCH
Confidence 37999999999999999999999999999999987664322 333 3468999999999998876 7889999
Q ss_pred HHHhccCCCcEEEEcCCCcc-ccHHHHHH
Q 021388 216 EVIDALGPKGVLINIGRGPH-VDERELVS 243 (313)
Q Consensus 216 ~~l~~mk~ga~lIn~~rg~~-vd~~al~~ 243 (313)
+.+..||+|+++-|.|.-.+ +|...|.+
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L~~ 309 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGLEE 309 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHHHH
Confidence 99999999999999998766 67766654
No 69
>PLN02688 pyrroline-5-carboxylate reductase
Probab=98.87 E-value=3e-08 Score=90.49 Aligned_cols=99 Identities=19% Similarity=0.279 Sum_probs=76.2
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCC----CEEEe-cCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSC----PINYY-SRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIIN 214 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~----~V~~~-~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~ 214 (313)
++|||||+|+||.++++.|...|+ +|++| +|+++.. .+.....+..++++++|+|++|+| ......++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 479999999999999999998888 88888 8876532 234445678888999999999997 45566666
Q ss_pred HHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388 215 REVIDALGPKGVLINIGRGPHVDERELVSALVE 247 (313)
Q Consensus 215 ~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~ 247 (313)
.+....++++.++|++.-| +..+.+.+.+..
T Consensus 79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~ 109 (266)
T PLN02688 79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG 109 (266)
T ss_pred HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence 4566678899999988665 466677766543
No 70
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.87 E-value=3.5e-08 Score=95.90 Aligned_cols=131 Identities=13% Similarity=0.201 Sum_probs=90.7
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------------------------c-cccCCCHHHHhhcCCEE
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------------------------K-YKYYPSVVELASNCHIL 199 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~e~~~~aDvV 199 (313)
++|||||+|.||..+|..|...|++|++||++++... + .....+++++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 3799999999999999999999999999998765211 1 22335678888999999
Q ss_pred EEecCCChh---------hhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHH-HhC-CeeEEEecC---CCCCCCCC
Q 021388 200 VVACPLTEE---------TRHIINREVIDALGPKGVLINIGRGPHVDERELVSAL-VEG-RLGGAGLDV---FENEPHVP 265 (313)
Q Consensus 200 ~~~lp~~~~---------t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al-~~~-~l~ga~lDV---~~~Ep~~~ 265 (313)
++|+|.... .... .++..+.+++|.++|+.|+-.+-..+.+.+.+ ++. .+. .+.|. +.+|...+
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~-~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~-~~~d~~v~~~Pe~~~~ 158 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESA-AETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLK-LGEDFYLAYNPEFLRE 158 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHH-HHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCC-CCCCceEEECCCcCCC
Confidence 999996542 2222 24566778999999999988777777886544 431 121 13342 34444333
Q ss_pred C----cccCCCceEEc
Q 021388 266 E----ELFGLENVVLM 277 (313)
Q Consensus 266 ~----~L~~~pnv~lT 277 (313)
. .++..+.+++.
T Consensus 159 G~~~~~~~~~~~iv~G 174 (411)
T TIGR03026 159 GNAVHDLLNPDRIVGG 174 (411)
T ss_pred CChhhhhcCCCEEEEe
Confidence 2 35666777766
No 71
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.87 E-value=8.5e-09 Score=95.25 Aligned_cols=130 Identities=21% Similarity=0.245 Sum_probs=89.5
Q ss_pred ccccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||+|+|||.| .||++||.+|...|++|.+|++... ++.+++++||+|+++++..+ .+....
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~---------~l~e~~~~ADIVIsavg~~~----~v~~~~ 220 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST---------DAKALCRQADIVVAAVGRPR----LIDADW 220 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC---------CHHHHHhcCCEEEEecCChh----cccHhh
Confidence 457999999999996 9999999999999999999987542 68899999999999998543 454444
Q ss_pred HhccCCCcEEEEcCCCccccHHHHHHHHHhC--CeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHH
Q 021388 218 IDALGPKGVLINIGRGPHVDERELVSALVEG--RLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLV 295 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~--~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~ 295 (313)
+|+|+++||+|.-.+.+ +| ++ .=||-..+ . .+. --.+||--||--.-+..-+.+..
T Consensus 221 ---ik~GaiVIDvgin~~~~---------~g~~kl---~GDvdf~~-~-----~~~-a~~iTPVPGGVGp~Tva~L~~N~ 278 (301)
T PRK14194 221 ---LKPGAVVIDVGINRIDD---------DGRSRL---VGDVDFDS-A-----LPV-VSAITPVPGGVGPMTIAFLMKNT 278 (301)
T ss_pred ---ccCCcEEEEecccccCC---------CCCcce---ecccchHH-H-----Hhh-cceecCCCCchhHHHHHHHHHHH
Confidence 89999999999654321 13 33 44663111 1 111 12688877776554444444444
Q ss_pred HHHHHHHH
Q 021388 296 LGNLEAHF 303 (313)
Q Consensus 296 ~~nl~~~~ 303 (313)
++.-+++.
T Consensus 279 ~~a~~~~~ 286 (301)
T PRK14194 279 VTAARLQA 286 (301)
T ss_pred HHHHHHHH
Confidence 44444444
No 72
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.87 E-value=2.9e-09 Score=81.93 Aligned_cols=85 Identities=22% Similarity=0.280 Sum_probs=62.9
Q ss_pred EEEEEcCChHHHHHHHHHHhCC---CCEE-EecCCCCCcc------ccccCC-CHHHHhhcCCEEEEecCCChhhhcccC
Q 021388 146 TVGIIGLGRIGMAVAKRAEAFS---CPIN-YYSRTEKPNL------KYKYYP-SVVELASNCHILVVACPLTEETRHIIN 214 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~G---~~V~-~~~~~~~~~~------~~~~~~-~l~e~~~~aDvV~~~lp~~~~t~~li~ 214 (313)
||||||+|+||.++++.+...| .+|. +++|++++.. +..... +..++++++|+|++++| |+...-+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~--p~~~~~v~ 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK--PQQLPEVL 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S---GGGHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC--HHHHHHHH
Confidence 6999999999999999999999 8898 5588876432 222233 78899999999999998 43333333
Q ss_pred HHHHhccCCCcEEEEcCCC
Q 021388 215 REVIDALGPKGVLINIGRG 233 (313)
Q Consensus 215 ~~~l~~mk~ga~lIn~~rg 233 (313)
.+. ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 444 667789999998654
No 73
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.86 E-value=2.3e-08 Score=92.71 Aligned_cols=136 Identities=18% Similarity=0.235 Sum_probs=89.7
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhc
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASN 195 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~ 195 (313)
++|+|||.|.||..+|..+...|++|.+||++++... + .....+++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 6899999999999999999999999999998764211 1 11234554 4789
Q ss_pred CCEEEEecCCChhhhcccCHHHHhccCCCcEEE-EcCCCccccHHHHHHHHHh-CCeeEEEecCCCCCCCCCCcccCCCc
Q 021388 196 CHILVVACPLTEETRHIINREVIDALGPKGVLI-NIGRGPHVDERELVSALVE-GRLGGAGLDVFENEPHVPEELFGLEN 273 (313)
Q Consensus 196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lI-n~~rg~~vd~~al~~al~~-~~l~ga~lDV~~~Ep~~~~~L~~~pn 273 (313)
||+|+.++|...+.+..+-+++.+.++++++++ |++.-.+ ..+.+.+.. .++. ++-.+. |.+-. +-
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~~~r~~--g~h~~~--p~~~~-----~~ 151 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDRPERFI--GIHFMN--PVPVM-----KL 151 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCCcccEE--EeeccC--CcccC-----ce
Confidence 999999999887766555467778899999997 6665543 356666642 2332 444443 32222 22
Q ss_pred eEEccCCCCCcHHHHHHHHHH
Q 021388 274 VVLMPHVGSGTVETRKTMADL 294 (313)
Q Consensus 274 v~lTPH~a~~t~~~~~~~~~~ 294 (313)
+-+.|+.+ .+++..+++...
T Consensus 152 vei~~g~~-t~~~~~~~~~~~ 171 (292)
T PRK07530 152 VELIRGIA-TDEATFEAAKEF 171 (292)
T ss_pred EEEeCCCC-CCHHHHHHHHHH
Confidence 34666643 344444444433
No 74
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.84 E-value=5.1e-08 Score=91.46 Aligned_cols=101 Identities=15% Similarity=0.228 Sum_probs=80.9
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc--------------------c-----cccCCCHHHHhhcCCEE
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL--------------------K-----YKYYPSVVELASNCHIL 199 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------------------~-----~~~~~~l~e~~~~aDvV 199 (313)
++|||||.|.||..+|..+...|++|.+||++++... + .....++++.+++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 6899999999999999999999999999999764210 0 12345788999999999
Q ss_pred EEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388 200 VVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE 247 (313)
Q Consensus 200 ~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~ 247 (313)
+-++|...+.+..+-++.-+.+++++ ++.+++.+ ....++.+.++.
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~-l~~s~la~~~~~ 133 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDA-IIASSTSG-LLPTDFYARATH 133 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCc-cCHHHHHHhcCC
Confidence 99999999988887788888999998 45555553 466777777744
No 75
>PRK08818 prephenate dehydrogenase; Provisional
Probab=98.84 E-value=1.1e-07 Score=90.70 Aligned_cols=121 Identities=15% Similarity=0.213 Sum_probs=84.4
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHHh-CCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHh
Q 021388 142 FTGKTVGIIGL-GRIGMAVAKRAEA-FSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVID 219 (313)
Q Consensus 142 l~g~~igiiG~-G~iG~~iA~~l~~-~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~ 219 (313)
+...+|+|||+ |.||+.+|+.++. +|.+|++||+..+ ...++++.+++||+|++|+|.. .+..++ +++..
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------~~~~~~~~v~~aDlVilavPv~-~~~~~l-~~l~~ 73 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------GSLDPATLLQRADVLIFSAPIR-HTAALI-EEYVA 73 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------ccCCHHHHhcCCCEEEEeCCHH-HHHHHH-HHHhh
Confidence 35679999999 9999999999995 5899999998521 1336778899999999999943 344444 44443
Q ss_pred ---ccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCC---CcccCCCceEEccC
Q 021388 220 ---ALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVP---EELFGLENVVLMPH 279 (313)
Q Consensus 220 ---~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~---~~L~~~pnv~lTPH 279 (313)
.++++++++|++.-+. ...+++..... ++...-|..- ..+++.-++++||.
T Consensus 74 ~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~~-----~fVG~HPMaG~E~s~lf~g~~~iltp~ 130 (370)
T PRK08818 74 LAGGRAAGQLWLDVTSIKQ----APVAAMLASQA-----EVVGLHPMTAPPKSPTLKGRVMVVCEA 130 (370)
T ss_pred hhcCCCCCeEEEECCCCcH----HHHHHHHhcCC-----CEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence 3899999999998763 22233322211 2334445432 25777778999996
No 76
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.84 E-value=3.2e-09 Score=102.21 Aligned_cols=96 Identities=17% Similarity=0.226 Sum_probs=73.2
Q ss_pred CCCCCCcccc-cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCC------CCC-----ccccccCCCHHHHhhcCC
Q 021388 130 KWKKGDYKLT-TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT------EKP-----NLKYKYYPSVVELASNCH 197 (313)
Q Consensus 130 ~w~~~~~~~~-~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~------~~~-----~~~~~~~~~l~e~~~~aD 197 (313)
.|.+..++.. ..|.||+|+|||+|++|+.-|..|+..|.+|.+--|. .+. ..++. ..+++|++++||
T Consensus 21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~-v~~~~Ea~~~AD 99 (487)
T PRK05225 21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFK-VGTYEELIPQAD 99 (487)
T ss_pred ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCc-cCCHHHHHHhCC
Confidence 4776555433 4599999999999999998888888888887733322 111 12343 467999999999
Q ss_pred EEEEecCCChhhhcccCHHHHhccCCCcEEE
Q 021388 198 ILVVACPLTEETRHIINREVIDALGPKGVLI 228 (313)
Q Consensus 198 vV~~~lp~~~~t~~li~~~~l~~mk~ga~lI 228 (313)
+|++.+|++. .+.+.++.++.||+|+.|.
T Consensus 100 vVviLlPDt~--q~~v~~~i~p~LK~Ga~L~ 128 (487)
T PRK05225 100 LVINLTPDKQ--HSDVVRAVQPLMKQGAALG 128 (487)
T ss_pred EEEEcCChHH--HHHHHHHHHhhCCCCCEEE
Confidence 9999999883 5566699999999999875
No 77
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.84 E-value=4.5e-08 Score=90.54 Aligned_cols=138 Identities=16% Similarity=0.219 Sum_probs=93.2
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------------------------------ccccCCCHHHHhh
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------------------------------KYKYYPSVVELAS 194 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------------------------------~~~~~~~l~e~~~ 194 (313)
++|+|||.|.||.++|..+...|++|..||++++... ......++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 5899999999999999999999999999998764210 0112457888899
Q ss_pred cCCEEEEecCCChhhhcccCHHHHhccCCCcEEE-EcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCc
Q 021388 195 NCHILVVACPLTEETRHIINREVIDALGPKGVLI-NIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLEN 273 (313)
Q Consensus 195 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lI-n~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pn 273 (313)
.||+|+.++|...+.+..+-++..+.++++++++ |+|. .....+.+.+.... +..++-. ..|.+..|.
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt---~~~~~~~~~~~~~~-r~vg~Hf-------~~p~~~~~l 152 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST---LLPSQFAEATGRPE-KFLALHF-------ANEIWKNNT 152 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc---CCHHHHHhhcCCcc-cEEEEcC-------CCCCCcCCe
Confidence 9999999999776655555466777788999885 4443 24456666654322 2223322 234556788
Q ss_pred eEEccCCCCCcHHHHHHHHHH
Q 021388 274 VVLMPHVGSGTVETRKTMADL 294 (313)
Q Consensus 274 v~lTPH~a~~t~~~~~~~~~~ 294 (313)
+.+.|+-. .+++..+++.+.
T Consensus 153 vevv~~~~-t~~~~~~~~~~~ 172 (287)
T PRK08293 153 AEIMGHPG-TDPEVFDTVVAF 172 (287)
T ss_pred EEEeCCCC-CCHHHHHHHHHH
Confidence 88888644 344555544333
No 78
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=98.83 E-value=8.4e-08 Score=92.09 Aligned_cols=121 Identities=13% Similarity=0.205 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388 101 TDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKP 179 (313)
Q Consensus 101 ~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~ 179 (313)
.+...+..+-.++...|+.. ....... .....++|+||| +|.||+.+|+.|+..|++|.+||++..
T Consensus 67 ~~~~~~~i~~~i~~~s~~~q------~~~~~~~------~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~- 133 (374)
T PRK11199 67 PPDLIEDVLRRVMRESYSSE------NDKGFKT------LNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW- 133 (374)
T ss_pred CHHHHHHHHHHHHHHHHHHh------HHhcccc------cCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-
Confidence 34455666666776666442 1111211 112457999998 999999999999999999999998531
Q ss_pred ccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHH
Q 021388 180 NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSA 244 (313)
Q Consensus 180 ~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~a 244 (313)
.+.++++++||+|++|+|... +..++ +++.. +++|++++|++..+..-.+++.+.
T Consensus 134 -------~~~~~~~~~aDlVilavP~~~-~~~~~-~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~ 188 (374)
T PRK11199 134 -------DRAEDILADAGMVIVSVPIHL-TEEVI-ARLPP-LPEDCILVDLTSVKNAPLQAMLAA 188 (374)
T ss_pred -------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HHHhC-CCCCcEEEECCCccHHHHHHHHHh
Confidence 356788999999999999654 34455 44555 899999999987654334444443
No 79
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.81 E-value=4.9e-08 Score=97.03 Aligned_cols=110 Identities=14% Similarity=0.131 Sum_probs=80.3
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------------------------c-cccCCCHHHHhhcCCEE
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------------------------K-YKYYPSVVELASNCHIL 199 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~e~~~~aDvV 199 (313)
++|||||+|.||.++|..+...|++|.+||++++... + .....++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 5899999999999999999999999999999765321 1 23356788899999999
Q ss_pred EEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCC
Q 021388 200 VVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVF 258 (313)
Q Consensus 200 ~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~ 258 (313)
+.++|...+.+..+-+++-+.++++++ |.+++.++- ...+.+.+..... ...+-+
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~i-I~SsTsgi~-~s~l~~~~~~~~r--~~~~hP 139 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDAL-IGSSTSGFL-PSDLQEGMTHPER--LFVAHP 139 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcE-EEEcCCCCC-HHHHHhhcCCcce--EEEEec
Confidence 999998877676554555566777765 555555543 5577777754432 255544
No 80
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.77 E-value=9.8e-08 Score=88.38 Aligned_cols=138 Identities=19% Similarity=0.260 Sum_probs=90.9
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------cc-------------ccCCCHHHHhhc
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------KY-------------KYYPSVVELASN 195 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~~-------------~~~~~l~e~~~~ 195 (313)
++|||||.|.||..+|..+...|++|..||++++... +. ....++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 4899999999999999999999999999998876311 10 023456 45799
Q ss_pred CCEEEEecCCChhhhcccCHHHHhcc-CCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCce
Q 021388 196 CHILVVACPLTEETRHIINREVIDAL-GPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENV 274 (313)
Q Consensus 196 aDvV~~~lp~~~~t~~li~~~~l~~m-k~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv 274 (313)
||+|+-++|.+.+.+..+-.+.-+.+ ++++++++.+.+-.+ .++..+++... +..++..|.+-|. .|-|
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~--~~la~~~~~~~-r~~g~hf~~P~~~-------~~lv 154 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPI--MKLAAATKRPG-RVLGLHFFNPVPV-------LPLV 154 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCCCc-cEEEEecCCCccc-------CceE
Confidence 99999999999998887755554555 899999887766444 44444443221 1235555543332 3334
Q ss_pred EEccCCCCCcHHHHHHHHHH
Q 021388 275 VLMPHVGSGTVETRKTMADL 294 (313)
Q Consensus 275 ~lTPH~a~~t~~~~~~~~~~ 294 (313)
=++|+.+ .+.+..+++...
T Consensus 155 Elv~~~~-T~~~~~~~~~~~ 173 (286)
T PRK07819 155 ELVPTLV-TSEATVARAEEF 173 (286)
T ss_pred EEeCCCC-CCHHHHHHHHHH
Confidence 5555433 334444444443
No 81
>PRK08507 prephenate dehydrogenase; Validated
Probab=98.75 E-value=1.3e-07 Score=86.96 Aligned_cols=127 Identities=20% Similarity=0.315 Sum_probs=81.0
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCc-----cccc-cCCCHHHHhhcCCEEEEecCCChhhhcccCHH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPN-----LKYK-YYPSVVELASNCHILVVACPLTEETRHIINRE 216 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~-----~~~~-~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~ 216 (313)
++|+|||+|.||+++|+.|+..|+ +|++||++++.. .+.. ...+.+++. ++|+|++|+|... ...++ .+
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~-~~~~~-~~ 77 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDA-IIEIL-PK 77 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHH-HHHHH-HH
Confidence 379999999999999999998885 789999876532 1221 234666765 5999999999543 33344 45
Q ss_pred HHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCC---C---CCCCC-cccCCCceEEccCC
Q 021388 217 VIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFEN---E---PHVPE-ELFGLENVVLMPHV 280 (313)
Q Consensus 217 ~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~---E---p~~~~-~L~~~pnv~lTPH~ 280 (313)
..+ +++++++++++.- ...+.+.+.+.. .+..++.... | |.... .+++-..++++|.-
T Consensus 78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~~~-~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~ 142 (275)
T PRK08507 78 LLD-IKENTTIIDLGST----KAKIIESVPKHI-RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVE 142 (275)
T ss_pred Hhc-cCCCCEEEECccc----hHHHHHHHHHhc-CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCC
Confidence 666 8999999997653 344555554431 1113333321 1 11111 25555567888854
No 82
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=98.75 E-value=1.1e-07 Score=87.92 Aligned_cols=89 Identities=18% Similarity=0.087 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhCCCCEEEecCCCCCc----------cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCC
Q 021388 155 IGMAVAKRAEAFSCPINYYSRTEKPN----------LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPK 224 (313)
Q Consensus 155 iG~~iA~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~g 224 (313)
-|++||++|...|++|++||+++... .|.....+..++++++|+|++|+|..++++.++ ...++.+++|
T Consensus 31 gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~G 109 (341)
T TIGR01724 31 GGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPEN 109 (341)
T ss_pred CHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCC
Confidence 48899999999999999999875421 245566789999999999999999888888887 5689999999
Q ss_pred cEEEEcCCCccccHHHHHHHHHh
Q 021388 225 GVLINIGRGPHVDERELVSALVE 247 (313)
Q Consensus 225 a~lIn~~rg~~vd~~al~~al~~ 247 (313)
+++||+++.+ .+.+...|+.
T Consensus 110 aIVID~STIs---P~t~~~~~e~ 129 (341)
T TIGR01724 110 AVICNTCTVS---PVVLYYSLEK 129 (341)
T ss_pred CEEEECCCCC---HHHHHHHHHH
Confidence 9999998765 4555555544
No 83
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.73 E-value=4.3e-08 Score=90.14 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=77.3
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCC----CEEEecCCCCCc------cccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSC----PINYYSRTEKPN------LKYKYYPSVVELASNCHILVVACPLTEETRHIIN 214 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~----~V~~~~~~~~~~------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~ 214 (313)
++|||||+|+||.++++.|...|+ +|+++||+++.. .+.....+..+++++||+|++|+| +.....++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH-
Confidence 589999999999999999998774 599999876532 233344577788999999999999 35555555
Q ss_pred HHHHhccCCCcEEEEcCCCccccHHHHHHHHH
Q 021388 215 REVIDALGPKGVLINIGRGPHVDERELVSALV 246 (313)
Q Consensus 215 ~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~ 246 (313)
+++...++++.++|++.-| ++.+.|.+.+.
T Consensus 81 ~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 5565667889999999988 67788888774
No 84
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.72 E-value=7.9e-08 Score=88.58 Aligned_cols=101 Identities=16% Similarity=0.200 Sum_probs=74.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCC----CCEEEecCCCCCc-------cccccCCCHHHHhhcCCEEEEecCCChhhhc
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFS----CPINYYSRTEKPN-------LKYKYYPSVVELASNCHILVVACPLTEETRH 211 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G----~~V~~~~~~~~~~-------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~ 211 (313)
.+++|||||+|+||.++++.|...| .+|.+++|+.... .+.....+..++++++|+|++++|.. ....
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~-~~~~ 80 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPK-DVAE 80 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHH-HHHH
Confidence 3579999999999999999999887 6799999865311 13334567788899999999999933 3444
Q ss_pred ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388 212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVE 247 (313)
Q Consensus 212 li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~ 247 (313)
++ .++...++++.++|++.-| +..+.+.+.+..
T Consensus 81 vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~ 113 (279)
T PRK07679 81 AL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK 113 (279)
T ss_pred HH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence 44 5566667889999998655 356666666543
No 85
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.72 E-value=9.1e-08 Score=95.26 Aligned_cols=113 Identities=20% Similarity=0.340 Sum_probs=84.6
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhc
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASN 195 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~ 195 (313)
++|||||+|.||+.||..+...|++|.+||++++... + .....++++ +++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 6799999999999999999999999999999876311 1 122356655 569
Q ss_pred CCEEEEecCCChhhhcccCHHHHhccCCCcEE-EEcCCCccccHHHHHHHHHh-CCeeEEEecCCCCCCC
Q 021388 196 CHILVVACPLTEETRHIINREVIDALGPKGVL-INIGRGPHVDERELVSALVE-GRLGGAGLDVFENEPH 263 (313)
Q Consensus 196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~l-In~~rg~~vd~~al~~al~~-~~l~ga~lDV~~~Ep~ 263 (313)
||+|+-++|...+.+..+-.++-..+++++++ +|+|.-++- .+.+++.. .++ .++..|.+-|.
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~--~G~hff~Pa~v 151 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERV--AGLHFFNPVPL 151 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccE--EEEeecCCccc
Confidence 99999999999998887766665667899999 599887763 56666643 233 36666654443
No 86
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.71 E-value=2.7e-07 Score=85.09 Aligned_cols=100 Identities=13% Similarity=0.178 Sum_probs=74.3
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhc
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASN 195 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~ 195 (313)
++|+|||.|.||..+|..+...|++|.+||++++... + .....+.+ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5799999999999999999999999999998765321 1 01123444 4789
Q ss_pred CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388 196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE 247 (313)
Q Consensus 196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~ 247 (313)
||+|+.++|.....+.-+-+++.+.++++++++....| +....+.+.+..
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~ 132 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR 132 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence 99999999977776655556677788999988444333 556688887743
No 87
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.71 E-value=8.9e-08 Score=92.27 Aligned_cols=123 Identities=13% Similarity=0.166 Sum_probs=87.8
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc---------------------cccc--CCCHHHHhhcCCEEEE
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL---------------------KYKY--YPSVVELASNCHILVV 201 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~---------------------~~~~--~~~l~e~~~~aDvV~~ 201 (313)
++|+|||+|.||..+|..+. .|++|++||+++++.. .... ..+..+.+++||+|++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 37999999999999997766 4999999998765311 0111 1235677899999999
Q ss_pred ecCCChh----------hhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC----c
Q 021388 202 ACPLTEE----------TRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE----E 267 (313)
Q Consensus 202 ~lp~~~~----------t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~----~ 267 (313)
|+|...+ .+..+ ++... +++|.++|+.|+-.+-..+.+.+.+.+..+. |.+|.+.+. .
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G~a~~d 151 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREGKALYD 151 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCCccccc
Confidence 9996521 12222 33444 7999999999999999999999888765543 477766543 4
Q ss_pred ccCCCceEE
Q 021388 268 LFGLENVVL 276 (313)
Q Consensus 268 L~~~pnv~l 276 (313)
+...|+|++
T Consensus 152 ~~~p~rvv~ 160 (388)
T PRK15057 152 NLHPSRIVI 160 (388)
T ss_pred ccCCCEEEE
Confidence 566666654
No 88
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.71 E-value=6.3e-08 Score=89.58 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=66.8
Q ss_pred cccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEec-CCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 140 TKFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYS-RTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 140 ~~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~-~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
.++.||+|+||| .|.||++||.+|...|+.|.+|+ ++. ++++++++||+|+++++... .+.+..
T Consensus 154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------~l~e~~~~ADIVIsavg~~~----~v~~~~ 219 (296)
T PRK14188 154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------DLPAVCRRADILVAAVGRPE----MVKGDW 219 (296)
T ss_pred CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------CHHHHHhcCCEEEEecCChh----hcchhe
Confidence 469999999999 99999999999999999999995 543 47899999999999998654 444433
Q ss_pred HhccCCCcEEEEcCCCcc
Q 021388 218 IDALGPKGVLINIGRGPH 235 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~~ 235 (313)
+|+|+++||+|--.+
T Consensus 220 ---lk~GavVIDvGin~~ 234 (296)
T PRK14188 220 ---IKPGATVIDVGINRI 234 (296)
T ss_pred ---ecCCCEEEEcCCccc
Confidence 899999999986553
No 89
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.70 E-value=8.3e-08 Score=80.13 Aligned_cols=106 Identities=21% Similarity=0.239 Sum_probs=79.0
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCC-CCEEEecCCCCCcc------cc----ccCCCHHHHhhcCCEEEEecCCChh-
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFS-CPINYYSRTEKPNL------KY----KYYPSVVELASNCHILVVACPLTEE- 208 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~------~~----~~~~~l~e~~~~aDvV~~~lp~~~~- 208 (313)
.+.+++++|+|.|.||+.+++.+...| .+|.+++++.+... +. ....+..++++++|+|++++|....
T Consensus 16 ~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~ 95 (155)
T cd01065 16 ELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKP 95 (155)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCC
Confidence 366789999999999999999999886 67999998865321 11 1234677778999999999997654
Q ss_pred hhc-ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388 209 TRH-IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG 251 (313)
Q Consensus 209 t~~-li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ 251 (313)
... .+.. ..++++.+++|++..+... .+.+++++.++.
T Consensus 96 ~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~ 134 (155)
T cd01065 96 GDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGAK 134 (155)
T ss_pred CCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCc
Confidence 222 2222 2368999999998875443 888888887664
No 90
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.70 E-value=1.8e-07 Score=87.46 Aligned_cols=136 Identities=17% Similarity=0.181 Sum_probs=86.7
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------cc-------------ccCCCHHHHhhc
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------KY-------------KYYPSVVELASN 195 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~~-------------~~~~~l~e~~~~ 195 (313)
++|+|||.|.||.++|..+...|++|.+||++++... +. ....++.+++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 4799999999999999999999999999999864211 11 234578888999
Q ss_pred CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceE
Q 021388 196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVV 275 (313)
Q Consensus 196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~ 275 (313)
+|+|+.++|...+.+..+-++. ..+.++..++.++... .....+.+.+..... ...|-+-+-| +-.|=+.
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~l-~~~~~~~~ii~ssts~-~~~~~la~~~~~~~~--~~~~hp~~p~------~~~~lve 152 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAEL-DALAPPHAILASSTSA-LLASAFTEHLAGRER--CLVAHPINPP------YLIPVVE 152 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHHH-HHhCCCcceEEEeCCC-CCHHHHHHhcCCccc--EEEEecCCCc------ccCceEE
Confidence 9999999997765554443433 3333444444444443 456678887755443 2445443211 1113356
Q ss_pred EccCCCCCcHHHHHHH
Q 021388 276 LMPHVGSGTVETRKTM 291 (313)
Q Consensus 276 lTPH~a~~t~~~~~~~ 291 (313)
++|+-+ .+++..+++
T Consensus 153 iv~~~~-t~~~~~~~~ 167 (308)
T PRK06129 153 VVPAPW-TAPATLARA 167 (308)
T ss_pred EeCCCC-CCHHHHHHH
Confidence 888744 334444443
No 91
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.69 E-value=6.1e-08 Score=91.32 Aligned_cols=98 Identities=22% Similarity=0.247 Sum_probs=75.7
Q ss_pred CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-------------c------cccCCCHHHHhhcCCEEEEecC
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-------------K------YKYYPSVVELASNCHILVVACP 204 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------------~------~~~~~~l~e~~~~aDvV~~~lp 204 (313)
.++|+|||+|.||..+|.+|...|++|.+|+|+++... + .....++++.++.+|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 45899999999999999999999999999999754210 1 1234578888899999999999
Q ss_pred CChhhhcccCHHHHhccCCCcEEEEcCCC-cccc--HHHHHHHHHh
Q 021388 205 LTEETRHIINREVIDALGPKGVLINIGRG-PHVD--ERELVSALVE 247 (313)
Q Consensus 205 ~~~~t~~li~~~~l~~mk~ga~lIn~~rg-~~vd--~~al~~al~~ 247 (313)
... + ++.++.++++.++|+++.| ..-+ .+.+.+.+.+
T Consensus 84 ~~~-~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~ 123 (328)
T PRK14618 84 SKA-L-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF 123 (328)
T ss_pred hHH-H-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence 552 2 5566889999999999997 4333 5566666655
No 92
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.69 E-value=2.7e-07 Score=85.56 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=74.8
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-------------------cc-------------ccCCCHHHH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-------------------KY-------------KYYPSVVEL 192 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------------------~~-------------~~~~~l~e~ 192 (313)
++|+|||.|.||..+|..+...|++|++||++++... +. ....++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 5899999999999999999999999999998764311 00 012234 56
Q ss_pred hhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388 193 ASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE 247 (313)
Q Consensus 193 ~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~ 247 (313)
+++||+|+.++|...+.+..+-+++-+.+++++++++...| +....+.+.+..
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~ 135 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER 135 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC
Confidence 78999999999977655554445566678899999877666 466777777753
No 93
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.67 E-value=3.3e-07 Score=80.47 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=81.6
Q ss_pred ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------ccccCCCHHHHhh-cCCEEEEecCCChhhhc
Q 021388 139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYKYYPSVVELAS-NCHILVVACPLTEETRH 211 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~~~~~l~e~~~-~aDvV~~~lp~~~~t~~ 211 (313)
+.++.|++++|+|+|+||+.+|+.|..+|++|+++|++.+... +.... +.++++. ++|+++.|.. .+
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v-~~~~l~~~~~Dv~vp~A~-----~~ 96 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVV-APEEIYSVDADVFAPCAL-----GG 96 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-cchhhccccCCEEEeccc-----cc
Confidence 3468999999999999999999999999999999998765311 22222 3355554 7999986654 35
Q ss_pred ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388 212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG 251 (313)
Q Consensus 212 li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ 251 (313)
+++++.++.|+ ..+++..+-+...| ..-.+.|++..+.
T Consensus 97 ~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~ 134 (200)
T cd01075 97 VINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL 134 (200)
T ss_pred ccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence 78999999997 56888888888876 6677888888887
No 94
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.67 E-value=3.4e-08 Score=94.65 Aligned_cols=91 Identities=14% Similarity=0.249 Sum_probs=72.4
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------ccc---c---CCCHHHHhhcCCEEEEecCCC-h
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYK---Y---YPSVVELASNCHILVVACPLT-E 207 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~---~---~~~l~e~~~~aDvV~~~lp~~-~ 207 (313)
.+.+.++.|+|.|.+|+.+++.++++|++|.++|+++.... +.. . ..++.+.++++|+|+.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 36778899999999999999999999999999998754211 110 1 134667789999999998643 2
Q ss_pred hhhcccCHHHHhccCCCcEEEEcC
Q 021388 208 ETRHIINREVIDALGPKGVLINIG 231 (313)
Q Consensus 208 ~t~~li~~~~l~~mk~ga~lIn~~ 231 (313)
.+..+++++.++.||+++++||++
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe
Confidence 345678999999999999999987
No 95
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.65 E-value=3.9e-07 Score=85.11 Aligned_cols=101 Identities=14% Similarity=0.178 Sum_probs=71.0
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------c--------------cccCCCHHHHhhcCCEEE
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------K--------------YKYYPSVVELASNCHILV 200 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------~--------------~~~~~~l~e~~~~aDvV~ 200 (313)
++|+|||.|.||..+|..+...|++|.+||++.+... + .....+.++.+++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 5899999999999999999999999999998764211 1 112356778889999999
Q ss_pred EecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388 201 VACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE 247 (313)
Q Consensus 201 ~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~ 247 (313)
+++|...+.+..+-+++-..++++++++....| +....+.+.+..
T Consensus 85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~ 129 (311)
T PRK06130 85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVTR 129 (311)
T ss_pred EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcCC
Confidence 999976544433334444556777766533333 345677777643
No 96
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.64 E-value=1.5e-07 Score=80.38 Aligned_cols=90 Identities=21% Similarity=0.350 Sum_probs=74.7
Q ss_pred cccCCCEEEEEcCChH-HHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388 140 TKFTGKTVGIIGLGRI-GMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVI 218 (313)
Q Consensus 140 ~~l~g~~igiiG~G~i-G~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l 218 (313)
..+.|+++.|||.|.| |..+|+.|...|++|.+.+|+. .++.+.++++|+|+.+++.. +++..+.
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~---------~~l~~~l~~aDiVIsat~~~----~ii~~~~- 105 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT---------KNLKEHTKQADIVIVAVGKP----GLVKGDM- 105 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc---------hhHHHHHhhCCEEEEcCCCC----ceecHHH-
Confidence 3589999999999996 8889999999999999999863 36788999999999999843 3677764
Q ss_pred hccCCCcEEEEcCCCccccHHHHHHHHHhCCeeE
Q 021388 219 DALGPKGVLINIGRGPHVDERELVSALVEGRLGG 252 (313)
Q Consensus 219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~g 252 (313)
++++.++||++...-+| ..++++.|
T Consensus 106 --~~~~~viIDla~prdvd-------~~~~~~~G 130 (168)
T cd01080 106 --VKPGAVVIDVGINRVPD-------KSGGKLVG 130 (168)
T ss_pred --ccCCeEEEEccCCCccc-------ccCCCeeC
Confidence 57899999999988887 55556543
No 97
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.64 E-value=7.8e-08 Score=94.37 Aligned_cols=107 Identities=16% Similarity=0.183 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhCCCCEEEecCCCCCcc----------ccccCCCHHHHhhc---CCEEEEecCCChhhhcccCHHHHhcc
Q 021388 155 IGMAVAKRAEAFSCPINYYSRTEKPNL----------KYKYYPSVVELASN---CHILVVACPLTEETRHIINREVIDAL 221 (313)
Q Consensus 155 iG~~iA~~l~~~G~~V~~~~~~~~~~~----------~~~~~~~l~e~~~~---aDvV~~~lp~~~~t~~li~~~~l~~m 221 (313)
||+.||++|...|++|.+|||++++.. +...+.+++++++. +|+|++++|..+.++.++ .++++.|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 799999999999999999999876321 24456789998874 899999999999999988 5689999
Q ss_pred CCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCC
Q 021388 222 GPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEP 262 (313)
Q Consensus 222 k~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep 262 (313)
.+|.++||+|+...-|...+.+.+++..+.....-|...++
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 99999999999999999999999999999844444454443
No 98
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.63 E-value=1.4e-07 Score=86.62 Aligned_cols=81 Identities=17% Similarity=0.290 Sum_probs=69.1
Q ss_pred ccccCCCEEEEEcCChH-HHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGRI-GMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~i-G~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||.|.+ |+++|..|...|++|+++... ..++.+.+++||+|+.+++ +.++++.
T Consensus 153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------t~~l~~~~~~ADIVV~avG----~~~~i~~-- 217 (285)
T PRK14189 153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------TRDLAAHTRQADIVVAAVG----KRNVLTA-- 217 (285)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------CCCHHHHhhhCCEEEEcCC----CcCccCH--
Confidence 35799999999999999 999999999999999987643 2368899999999999998 4567877
Q ss_pred HhccCCCcEEEEcCCCcc
Q 021388 218 IDALGPKGVLINIGRGPH 235 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~~ 235 (313)
..+|+|+++||+|.-.+
T Consensus 218 -~~ik~gavVIDVGin~~ 234 (285)
T PRK14189 218 -DMVKPGATVIDVGMNRD 234 (285)
T ss_pred -HHcCCCCEEEEcccccc
Confidence 55789999999997654
No 99
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.62 E-value=3.3e-07 Score=91.10 Aligned_cols=114 Identities=16% Similarity=0.201 Sum_probs=83.5
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhc
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASN 195 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~ 195 (313)
++|||||.|.||+.||..+...|++|.+||++++... + .....++++ +++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 5799999999999999999999999999999865321 1 112456655 569
Q ss_pred CCEEEEecCCChhhhcccCHHHHhccCCCcEEE-EcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCC
Q 021388 196 CHILVVACPLTEETRHIINREVIDALGPKGVLI-NIGRGPHVDERELVSALVEGRLGGAGLDVFENEPH 263 (313)
Q Consensus 196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lI-n~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~ 263 (313)
||+|+.++|...+.+..+-.++-+.+++++++. |+|.-++ ..+.+++.. ..+..++.-|.+-|.
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Papv 149 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAPV 149 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcccc
Confidence 999999999988888776566666788888876 7766554 456666643 233456776755554
No 100
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.62 E-value=1.6e-07 Score=86.17 Aligned_cols=80 Identities=23% Similarity=0.344 Sum_probs=66.8
Q ss_pred ccccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||+++|||. |.||+++|.+|...|++|.+|... ..++.+.+++||+|+.+++.. +++....
T Consensus 153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------t~~l~~~~~~ADIVI~avg~~----~~v~~~~ 219 (284)
T PRK14179 153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------TRNLAEVARKADILVVAIGRG----HFVTKEF 219 (284)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------CCCHHHHHhhCCEEEEecCcc----ccCCHHH
Confidence 45799999999999 999999999999999999998422 126889999999999999844 3455544
Q ss_pred HhccCCCcEEEEcCCCc
Q 021388 218 IDALGPKGVLINIGRGP 234 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~ 234 (313)
+|+|+++||+|--.
T Consensus 220 ---ik~GavVIDvgin~ 233 (284)
T PRK14179 220 ---VKEGAVVIDVGMNR 233 (284)
T ss_pred ---ccCCcEEEEeccee
Confidence 89999999998655
No 101
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.59 E-value=1.2e-07 Score=87.18 Aligned_cols=104 Identities=20% Similarity=0.213 Sum_probs=78.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHh--CCCCEE-EecCCCCCcc------c-cccCCCHHHHhhcCCEEEEecCCChhhhcc
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEA--FSCPIN-YYSRTEKPNL------K-YKYYPSVVELASNCHILVVACPLTEETRHI 212 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~--~G~~V~-~~~~~~~~~~------~-~~~~~~l~e~~~~aDvV~~~lp~~~~t~~l 212 (313)
...+|||||+|.||+.+++.+.. .++++. ++|++++... + ...+.++++++.++|+|++|+|.... .
T Consensus 5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h--~- 81 (271)
T PRK13302 5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL--R- 81 (271)
T ss_pred CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH--H-
Confidence 34789999999999999999986 478875 7788765321 1 13457899999999999999995432 1
Q ss_pred cCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388 213 INREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG 251 (313)
Q Consensus 213 i~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ 251 (313)
+-....++.|.-++..+++.+.+.++|.++.++++..
T Consensus 82 --e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~ 118 (271)
T PRK13302 82 --AIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ 118 (271)
T ss_pred --HHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence 2223445677777778899888999999999887754
No 102
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.59 E-value=1e-07 Score=89.23 Aligned_cols=89 Identities=16% Similarity=0.335 Sum_probs=69.5
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-------------------ccccCCCHHHHhhcCCEEEEecCC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-------------------KYKYYPSVVELASNCHILVVACPL 205 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------------------~~~~~~~l~e~~~~aDvV~~~lp~ 205 (313)
++|+|||+|.||..+|..|...|++|.+|+|+++... +.....+.++.++++|+|++++|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 4799999999999999999999999999998753210 122345777888999999999995
Q ss_pred ChhhhcccCHHHHhccCCCcEEEEcCCCcc
Q 021388 206 TEETRHIINREVIDALGPKGVLINIGRGPH 235 (313)
Q Consensus 206 ~~~t~~li~~~~l~~mk~ga~lIn~~rg~~ 235 (313)
..+..++ ++..+.+++++++|+++.|--
T Consensus 82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 82 -QALREVL-KQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred -HHHHHHH-HHHHhhcCCCCEEEEEeeccc
Confidence 4555555 456677789999999975543
No 103
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.56 E-value=1.1e-06 Score=82.78 Aligned_cols=152 Identities=19% Similarity=0.254 Sum_probs=118.0
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc----------cccCCCHHHH---hhcCCEEEEecCCChhhhc
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK----------YKYYPSVVEL---ASNCHILVVACPLTEETRH 211 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~----------~~~~~~l~e~---~~~aDvV~~~lp~~~~t~~ 211 (313)
..||+||+|.||+.+|......|++|.+|+|+.++... ...+.+++|+ +++-.-|++++-.-.....
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 57999999999999999999999999999998864221 2234567765 5678888888864332344
Q ss_pred ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHH
Q 021388 212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKT 290 (313)
Q Consensus 212 li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~ 290 (313)
+| ++++..|.+|-++||-|...--|+....++|.+..|...+.-|...|--.-. | -+.| |.+.++++.
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GP-------SiMp---GG~~eay~~ 152 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGP-------SIMP---GGQKEAYEL 152 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCC-------CcCC---CCCHHHHHH
Confidence 55 7799999999999999999999999999999999999999999888864321 2 2334 677888888
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 021388 291 MADLVLGNLEAHFLNKPL 308 (313)
Q Consensus 291 ~~~~~~~nl~~~~~g~~~ 308 (313)
+..+ +..|.+-..|+|-
T Consensus 153 v~pi-l~~IaAk~~g~pC 169 (473)
T COG0362 153 VAPI-LTKIAAKVDGEPC 169 (473)
T ss_pred HHHH-HHHHHhhcCCCCc
Confidence 7776 4556666666653
No 104
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.54 E-value=7.9e-07 Score=92.54 Aligned_cols=131 Identities=21% Similarity=0.264 Sum_probs=91.2
Q ss_pred CEEEEEcCChHHHHHHHHHHhCC--CCEEEecCCCCCc-----cccc--cCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFS--CPINYYSRTEKPN-----LKYK--YYPSVVELASNCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G--~~V~~~~~~~~~~-----~~~~--~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~ 215 (313)
++|||||+|.||.++++.++..| .+|++||++.+.. .+.. ...+++++++++|+|++++|.. ....++ +
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 68999999999999999999888 4799999986532 1221 2346778899999999999943 344444 4
Q ss_pred HHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCC----------CCcccCCCceEEccCCCC
Q 021388 216 EVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHV----------PEELFGLENVVLMPHVGS 282 (313)
Q Consensus 216 ~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~----------~~~L~~~pnv~lTPH~a~ 282 (313)
+..+.++++.+++|++..+....+.+.+.+....++ +...-|.. ...|++-.+++++|+-..
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r-----~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~ 153 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAG-----FVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET 153 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCe-----EEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence 555667889999999986644455666665442222 22223321 125788888999997543
No 105
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=98.53 E-value=1.4e-07 Score=86.05 Aligned_cols=90 Identities=20% Similarity=0.291 Sum_probs=76.4
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~ 215 (313)
.+.||.+.|.|||.+|+..|+.|++||.+|++-...+-.. ++++ ...++|++++.|+++.+.. .+++|..
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~-V~tm~ea~~e~difVTtTG----c~dii~~ 285 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYE-VTTLEEAIREVDIFVTTTG----CKDIITG 285 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccE-eeeHHHhhhcCCEEEEccC----CcchhhH
Confidence 3789999999999999999999999999999987665322 2333 4579999999999998765 7789999
Q ss_pred HHHhccCCCcEEEEcCCCcc
Q 021388 216 EVIDALGPKGVLINIGRGPH 235 (313)
Q Consensus 216 ~~l~~mk~ga~lIn~~rg~~ 235 (313)
+.|.+||.++++-|+|.-.+
T Consensus 286 ~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 286 EHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHHhCcCCcEEeccccccc
Confidence 99999999999999987654
No 106
>PRK07680 late competence protein ComER; Validated
Probab=98.50 E-value=3.9e-07 Score=83.65 Aligned_cols=98 Identities=13% Similarity=0.243 Sum_probs=73.9
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCC----CEEEecCCCCCcc-------ccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSC----PINYYSRTEKPNL-------KYKYYPSVVELASNCHILVVACPLTEETRHII 213 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~----~V~~~~~~~~~~~-------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li 213 (313)
++|||||+|+||+.+++.|...|. +|.+|+|+++... +.....+..+++.++|+|++++| ......++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence 369999999999999999998883 6899999864321 23334577888899999999997 23344444
Q ss_pred CHHHHhccCCCcEEEEcCCCccccHHHHHHHHH
Q 021388 214 NREVIDALGPKGVLINIGRGPHVDERELVSALV 246 (313)
Q Consensus 214 ~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~ 246 (313)
+++.+.++++.++|+++-| +..+.|.+.+.
T Consensus 80 -~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~ 109 (273)
T PRK07680 80 -QKLAPHLTDEHCLVSITSP--ISVEQLETLVP 109 (273)
T ss_pred -HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 4566678889999999855 47777777665
No 107
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.50 E-value=4.4e-06 Score=82.70 Aligned_cols=177 Identities=19% Similarity=0.276 Sum_probs=106.8
Q ss_pred CceEEEEeCCCCCCHHHHhhCC-CccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCC----------hHHHHHHHHHHHH
Q 021388 45 NIRAVVGNATAGADAELIDALP-KLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVL----------TDDVADLAIGLML 113 (313)
Q Consensus 45 ~~~~i~~~~~~~~~~~~l~~~~-~Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~----------~~~vAE~al~~~L 113 (313)
++|+|+.- .. .+.+.++.+. +--+|+...-..|.=-++++.++||++..--... =.++|+.+
T Consensus 64 ~adiIlkV-~~-P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iA----- 136 (511)
T TIGR00561 64 QSDIILKV-NA-PSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIA----- 136 (511)
T ss_pred cCCEEEEe-CC-CCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHH-----
Confidence 56877742 22 3455577765 4456666555554334677888999887632111 12344433
Q ss_pred HHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----ccccc---
Q 021388 114 AVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKY--- 185 (313)
Q Consensus 114 ~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~--- 185 (313)
-+|-+.+..+.. |++..+..-......+.++.|+|.|.+|...++.++.+|++|.++|++.... .+...
T Consensus 137 -Gy~Avi~Aa~~l--gr~~~g~~taag~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v 213 (511)
T TIGR00561 137 -GYRAIIEAAHEF--GRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLEL 213 (511)
T ss_pred -HHHHHHHHHHHh--hhhcCCceecCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEec
Confidence 222221111111 1111100001114567899999999999999999999999999999876421 11110
Q ss_pred --------------CCC----------HHHHhhcCCEEEEec--CCChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388 186 --------------YPS----------VVELASNCHILVVAC--PLTEETRHIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 186 --------------~~~----------l~e~~~~aDvV~~~l--p~~~~t~~li~~~~l~~mk~ga~lIn~~r 232 (313)
..+ +.+.++++|+|+.++ |..+ ...++.++.++.||+|+++||++-
T Consensus 214 ~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 214 DFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred cccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence 001 345578899998887 3322 335788999999999999999974
No 108
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.50 E-value=2.1e-07 Score=78.47 Aligned_cols=87 Identities=20% Similarity=0.317 Sum_probs=64.1
Q ss_pred EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-------------c------ccccCCCHHHHhhcCCEEEEecCCC
Q 021388 146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-------------L------KYKYYPSVVELASNCHILVVACPLT 206 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-------------~------~~~~~~~l~e~~~~aDvV~~~lp~~ 206 (313)
+|+|+|.|++|.++|..|...|.+|..|.|+++.. . ......+++++++++|+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 68999999999999999999999999999875410 0 0123468999999999999999944
Q ss_pred hhhhcccCHHHHhccCCCcEEEEcCCCc
Q 021388 207 EETRHIINREVIDALGPKGVLINIGRGP 234 (313)
Q Consensus 207 ~~t~~li~~~~l~~mk~ga~lIn~~rg~ 234 (313)
. .+.+ -++....++++..+|++..|=
T Consensus 81 ~-~~~~-~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 81 A-HREV-LEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp G-HHHH-HHHHTTTSHTT-EEEETS-SE
T ss_pred H-HHHH-HHHHhhccCCCCEEEEecCCc
Confidence 3 2333 366777788999999998763
No 109
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.48 E-value=8.9e-07 Score=81.57 Aligned_cols=102 Identities=17% Similarity=0.306 Sum_probs=74.7
Q ss_pred CEEEEEcCChHHHHHHHHHHhCC----CCEEEecCCCCCc-------c-ccccCCCHHHHhhcCCEEEEecCCChhhhcc
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFS----CPINYYSRTEKPN-------L-KYKYYPSVVELASNCHILVVACPLTEETRHI 212 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G----~~V~~~~~~~~~~-------~-~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~l 212 (313)
.+|+|||+|+||..+++.+...| .+|.+|+++.... . ......+..+++.++|+|++++|. .....+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence 47999999999999999999887 6899998864321 1 112245777889999999999992 334433
Q ss_pred cCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCe
Q 021388 213 INREVIDALGPKGVLINIGRGPHVDERELVSALVEGRL 250 (313)
Q Consensus 213 i~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l 250 (313)
+ .+....++++..+|.+.-| +..+.|.+.+...++
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~~~~v 115 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITPGLQV 115 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCCCCE
Confidence 3 4455567788899999888 677788887754333
No 110
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.47 E-value=4.6e-07 Score=82.47 Aligned_cols=97 Identities=14% Similarity=0.215 Sum_probs=72.4
Q ss_pred EEEEEcCChHHHHHHHHHHhCCCC---EEEecCCCCCcc-------ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388 146 TVGIIGLGRIGMAVAKRAEAFSCP---INYYSRTEKPNL-------KYKYYPSVVELASNCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~G~~---V~~~~~~~~~~~-------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~ 215 (313)
+|||||+|+||+++++.|...|.. +.+++|+.+... +.....+.+++++++|+|++++| ......++.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~- 79 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLR- 79 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHH-
Confidence 799999999999999999987754 578888765321 23345678888999999999999 344444442
Q ss_pred HHHhccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388 216 EVIDALGPKGVLINIGRGPHVDERELVSALVEG 248 (313)
Q Consensus 216 ~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~ 248 (313)
+ + .++++.++|.+. .-+..+.|.+.+..+
T Consensus 80 ~-l-~~~~~~~vis~~--ag~~~~~l~~~~~~~ 108 (258)
T PRK06476 80 A-L-RFRPGQTVISVI--AATDRAALLEWIGHD 108 (258)
T ss_pred H-h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence 2 2 257889999977 347888888888654
No 111
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.46 E-value=7.3e-07 Score=82.07 Aligned_cols=80 Identities=18% Similarity=0.355 Sum_probs=67.9
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+..+.|+++.|||.|. +|+.+|..|...|++|++++++. .++.+.+++||+|+.+++. .+++..+.
T Consensus 153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t---------~~l~~~~~~ADIVIsAvg~----p~~i~~~~ 219 (286)
T PRK14175 153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS---------KDMASYLKDADVIVSAVGK----PGLVTKDV 219 (286)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------hhHHHHHhhCCEEEECCCC----CcccCHHH
Confidence 3469999999999999 99999999999999999887642 2688999999999999984 34677754
Q ss_pred HhccCCCcEEEEcCCCc
Q 021388 218 IDALGPKGVLINIGRGP 234 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~ 234 (313)
+|+|+++||+|--.
T Consensus 220 ---vk~gavVIDvGi~~ 233 (286)
T PRK14175 220 ---VKEGAVIIDVGNTP 233 (286)
T ss_pred ---cCCCcEEEEcCCCc
Confidence 68999999999754
No 112
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.45 E-value=3.1e-07 Score=75.51 Aligned_cols=93 Identities=24% Similarity=0.280 Sum_probs=69.3
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCCCccc-----------cccCCCHHHHhhcCCEEEEecCCChh
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEKPNLK-----------YKYYPSVVELASNCHILVVACPLTEE 208 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~~~~~-----------~~~~~~l~e~~~~aDvV~~~lp~~~~ 208 (313)
++.|+++.|||.|.+|+.++..|...|++ |++++|+.++... .....++.+.+.++|+|+.+.|....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 68999999999999999999999999998 9999998753211 11244566788999999999986533
Q ss_pred hhcccCHHHHhccCCCc-EEEEcCCCccc
Q 021388 209 TRHIINREVIDALGPKG-VLINIGRGPHV 236 (313)
Q Consensus 209 t~~li~~~~l~~mk~ga-~lIn~~rg~~v 236 (313)
.+.++.++..++.. +++|.+...-+
T Consensus 89 ---~i~~~~~~~~~~~~~~v~Dla~Pr~i 114 (135)
T PF01488_consen 89 ---IITEEMLKKASKKLRLVIDLAVPRDI 114 (135)
T ss_dssp ---SSTHHHHTTTCHHCSEEEES-SS-SB
T ss_pred ---ccCHHHHHHHHhhhhceeccccCCCC
Confidence 67788877665543 88888654333
No 113
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.44 E-value=1.9e-07 Score=75.93 Aligned_cols=87 Identities=18% Similarity=0.320 Sum_probs=55.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCCEEE-ecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINY-YSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~-~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~ 215 (313)
...+|||||.|++|..+++.|...|+.|.. |+|+..... +.....+++++++++|++++++|++. ... +-+
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDda-I~~-va~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDA-IAE-VAE 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCH-HHH-HHH
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHH-HHH-HHH
Confidence 456999999999999999999999999865 567653211 12234567889999999999999763 222 234
Q ss_pred HHHhc--cCCCcEEEEcC
Q 021388 216 EVIDA--LGPKGVLINIG 231 (313)
Q Consensus 216 ~~l~~--mk~ga~lIn~~ 231 (313)
++... .++|.+++-+|
T Consensus 87 ~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HHHCC--S-TT-EEEES-
T ss_pred HHHHhccCCCCcEEEECC
Confidence 44444 68999999885
No 114
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.41 E-value=6.8e-07 Score=77.53 Aligned_cols=132 Identities=14% Similarity=0.167 Sum_probs=79.8
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------------cc-------------cccCCCHHHHhhcCCEE
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------------LK-------------YKYYPSVVELASNCHIL 199 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------------~~-------------~~~~~~l~e~~~~aDvV 199 (313)
++|+|||+|.+|..+|..+...|++|+++|.+++.. .+ .....+.++.++++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 589999999999999999999999999999876420 01 11235677889999999
Q ss_pred EEecCCChhhhccc--------CHHHHhccCCCcEEEEcCCCccccHHHHH-HHHHhCCeeEEEec-CCCCCCCCCC---
Q 021388 200 VVACPLTEETRHII--------NREVIDALGPKGVLINIGRGPHVDERELV-SALVEGRLGGAGLD-VFENEPHVPE--- 266 (313)
Q Consensus 200 ~~~lp~~~~t~~li--------~~~~l~~mk~ga~lIn~~rg~~vd~~al~-~al~~~~l~ga~lD-V~~~Ep~~~~--- 266 (313)
++|+|......+.. -+...+.++++.++|.-|+-.+=..+.+. ..|++....+.-++ +|.+|-+.+.
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~ 160 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI 160 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence 99998443332221 24567788999999999999987777444 44444332110111 2566665542
Q ss_pred -cccCCCceEE
Q 021388 267 -ELFGLENVVL 276 (313)
Q Consensus 267 -~L~~~pnv~l 276 (313)
.+...|+|++
T Consensus 161 ~d~~~~~rvV~ 171 (185)
T PF03721_consen 161 EDFRNPPRVVG 171 (185)
T ss_dssp HHHHSSSEEEE
T ss_pred hhccCCCEEEE
Confidence 4778888874
No 115
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.38 E-value=1.3e-06 Score=76.31 Aligned_cols=86 Identities=26% Similarity=0.272 Sum_probs=64.9
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc--------cccCCCHHHHhhcCCEEEEecCCChhhhcccCHH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK--------YKYYPSVVELASNCHILVVACPLTEETRHIINRE 216 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~--------~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~ 216 (313)
++++|+|.|+||..+|+++...|++|.+-+++...... .....+.++..+.+|+|++++|.... .. +.++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~-~~-v~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAI-PD-VLAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHH-Hh-HHHH
Confidence 58999999999999999999999999988665543211 11234678889999999999996543 22 2366
Q ss_pred HHhccCCCcEEEEcCCC
Q 021388 217 VIDALGPKGVLINIGRG 233 (313)
Q Consensus 217 ~l~~mk~ga~lIn~~rg 233 (313)
+...+. |.++||+.-.
T Consensus 80 l~~~~~-~KIvID~tnp 95 (211)
T COG2085 80 LRDALG-GKIVIDATNP 95 (211)
T ss_pred HHHHhC-CeEEEecCCC
Confidence 666665 8999998764
No 116
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=98.35 E-value=1.8e-06 Score=81.81 Aligned_cols=91 Identities=16% Similarity=0.105 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhCCCCEEEecCCCCC----------ccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCC
Q 021388 155 IGMAVAKRAEAFSCPINYYSRTEKP----------NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPK 224 (313)
Q Consensus 155 iG~~iA~~l~~~G~~V~~~~~~~~~----------~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~g 224 (313)
-|..+|.+|...|++|++||++... ..+.....+..++++++|+|++++|....++.++ .+....+++|
T Consensus 31 gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g 109 (342)
T PRK12557 31 GGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPEN 109 (342)
T ss_pred CHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCC
Confidence 3789999999999999999997641 1233445678888999999999999665567776 5788889999
Q ss_pred cEEEEcCCCccccH-HHHHHHHH
Q 021388 225 GVLINIGRGPHVDE-RELVSALV 246 (313)
Q Consensus 225 a~lIn~~rg~~vd~-~al~~al~ 246 (313)
+++||++.++.... +.+.+.+.
T Consensus 110 ~IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 110 AVICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred CEEEEecCCCHHHHHHHHHHHhc
Confidence 99999999987766 56666664
No 117
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=98.35 E-value=3.6e-07 Score=81.00 Aligned_cols=129 Identities=12% Similarity=0.158 Sum_probs=91.2
Q ss_pred ChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHH--HhCCCCEE-EecCC
Q 021388 100 LTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA--EAFSCPIN-YYSRT 176 (313)
Q Consensus 100 ~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l--~~~G~~V~-~~~~~ 176 (313)
.+...++|.+..++...|++. .|. ..++++|||+|.+|+.+++.+ ...|+++. ++|++
T Consensus 59 ~G~~~~gy~v~~l~~~~~~~l---------~~~----------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d 119 (213)
T PRK05472 59 FGKRGVGYNVEELLEFIEKIL---------GLD----------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD 119 (213)
T ss_pred cCCCCCCeeHHHHHHHHHHHh---------CCC----------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence 334556799999999988875 111 235899999999999999863 36788876 46765
Q ss_pred CCCcc----cc--ccCCCHHHHhhc--CCEEEEecCCChh---hhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHH
Q 021388 177 EKPNL----KY--KYYPSVVELASN--CHILVVACPLTEE---TRHIINREVIDALGPKGVLINIGRGPHVDERELVSAL 245 (313)
Q Consensus 177 ~~~~~----~~--~~~~~l~e~~~~--aDvV~~~lp~~~~---t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al 245 (313)
+.... +. ....++.+++++ .|.+++++|.... ...+.......-|...++.+|+.+|.+|+.++|..+|
T Consensus 120 ~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l 199 (213)
T PRK05472 120 PEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVEL 199 (213)
T ss_pred hhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHH
Confidence 43221 11 123457777754 9999999997765 2223333344556778899999999999999999998
Q ss_pred Hh
Q 021388 246 VE 247 (313)
Q Consensus 246 ~~ 247 (313)
..
T Consensus 200 ~~ 201 (213)
T PRK05472 200 QT 201 (213)
T ss_pred HH
Confidence 74
No 118
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.34 E-value=1.1e-06 Score=80.37 Aligned_cols=85 Identities=22% Similarity=0.294 Sum_probs=68.3
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC------ccccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP------NLKYKYYPSVVELASNCHILVVACPLTEETRHIIN 214 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~------~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~ 214 (313)
-|.||+|+|||||+-|++=|.+|+..|.+|++--|.... ..|+. ..+.+|++++||+|++.+|+..+ ..++.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~-V~~v~ea~k~ADvim~L~PDe~q-~~vy~ 92 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFK-VYTVEEAAKRADVVMILLPDEQQ-KEVYE 92 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCE-eecHHHHhhcCCEEEEeCchhhH-HHHHH
Confidence 489999999999999999999999999998876554432 22333 45799999999999999996544 44666
Q ss_pred HHHHhccCCCcEE
Q 021388 215 REVIDALGPKGVL 227 (313)
Q Consensus 215 ~~~l~~mk~ga~l 227 (313)
++.-..||+|+.+
T Consensus 93 ~~I~p~Lk~G~aL 105 (338)
T COG0059 93 KEIAPNLKEGAAL 105 (338)
T ss_pred HHhhhhhcCCceE
Confidence 7888899998854
No 119
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.34 E-value=3.2e-06 Score=63.93 Aligned_cols=67 Identities=27% Similarity=0.398 Sum_probs=56.2
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhC-CCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAF-SCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVI 218 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~-G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l 218 (313)
..+.+++++|+|.|.+|+.++..+... +.+|.+||| |+++.+.+. .+.+.++..
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r---------------------di~i~~~~~----~~~~~~~~~ 73 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR---------------------DILVTATPA----GVPVLEEAT 73 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC---------------------CEEEEcCCC----CCCchHHHH
Confidence 347889999999999999999999988 567889988 999998874 344556568
Q ss_pred hccCCCcEEEEcC
Q 021388 219 DALGPKGVLINIG 231 (313)
Q Consensus 219 ~~mk~ga~lIn~~ 231 (313)
..+++++++++++
T Consensus 74 ~~~~~~~~v~~~a 86 (86)
T cd05191 74 AKINEGAVVIDLA 86 (86)
T ss_pred HhcCCCCEEEecC
Confidence 8899999999874
No 120
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.29 E-value=1e-05 Score=74.40 Aligned_cols=81 Identities=19% Similarity=0.254 Sum_probs=67.4
Q ss_pred ccccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||-| .+|+++|..|...|+.|.++.... .++.+.+++||+|+.+++ ..+++..+.
T Consensus 152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t---------~~l~~~~~~ADIvV~AvG----~p~~i~~~~ 218 (285)
T PRK14191 152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT---------KDLSFYTQNADIVCVGVG----KPDLIKASM 218 (285)
T ss_pred CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc---------HHHHHHHHhCCEEEEecC----CCCcCCHHH
Confidence 457999999999999 899999999999999999875422 257889999999999997 345677766
Q ss_pred HhccCCCcEEEEcCCCcc
Q 021388 218 IDALGPKGVLINIGRGPH 235 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~~ 235 (313)
+ |+|+++||+|...+
T Consensus 219 v---k~GavVIDvGi~~~ 233 (285)
T PRK14191 219 V---KKGAVVVDIGINRL 233 (285)
T ss_pred c---CCCcEEEEeecccc
Confidence 5 89999999996553
No 121
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=98.28 E-value=3.3e-06 Score=77.03 Aligned_cols=99 Identities=31% Similarity=0.479 Sum_probs=67.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCC----CEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSC----PINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVI 218 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~----~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l 218 (313)
+.++|||||+|+||+++++.+...|. ++++++++.+.. +.....+..+++.++|+|++++| ..+...++ .+..
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl-~~i~ 78 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVL-LEIK 78 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHH-HHHH
Confidence 34689999999999999999987662 488999876542 22334567788889999999998 23444444 4444
Q ss_pred hccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388 219 DALGPKGVLINIGRGPHVDERELVSALVE 247 (313)
Q Consensus 219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~ 247 (313)
..++++ .+|.+.-| +..+.+.+.+..
T Consensus 79 ~~l~~~-~iIS~~aG--i~~~~l~~~~~~ 104 (260)
T PTZ00431 79 PYLGSK-LLISICGG--LNLKTLEEMVGV 104 (260)
T ss_pred hhccCC-EEEEEeCC--ccHHHHHHHcCC
Confidence 555554 45555555 446666665543
No 122
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.27 E-value=2.3e-06 Score=78.17 Aligned_cols=96 Identities=19% Similarity=0.200 Sum_probs=68.3
Q ss_pred CEEEEEcCChHHHHHHHHHHhCC---CCEEEecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFS---CPINYYSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G---~~V~~~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~ 215 (313)
++|+|||+|.||+.+++.+...| .+|.+++|+++... +.....+.++++.++|+|++++|.. ....++ +
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~-~ 80 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVL-S 80 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHH-H
Confidence 57999999999999999999888 68999999865321 2334457788889999999999832 233333 3
Q ss_pred HHHhccCCCcEEEEcCCCccccHHHHHHHHH
Q 021388 216 EVIDALGPKGVLINIGRGPHVDERELVSALV 246 (313)
Q Consensus 216 ~~l~~mk~ga~lIn~~rg~~vd~~al~~al~ 246 (313)
+....+ +.++|.+.-|- ..+.+.+.+.
T Consensus 81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 81 ELKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 333333 46777776653 5666776664
No 123
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.26 E-value=1e-05 Score=76.73 Aligned_cols=138 Identities=21% Similarity=0.314 Sum_probs=97.7
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------------------------c-cccCCCHHHHhhcCCEE
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------------------------K-YKYYPSVVELASNCHIL 199 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------------------------~-~~~~~~l~e~~~~aDvV 199 (313)
.+|||||||-||.++|..+...|++|+++|.++.... + .....+.+ .++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~-~l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPE-ELKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChh-hcccCCEE
Confidence 7999999999999999999999999999998765210 0 11123333 35599999
Q ss_pred EEecCCChhhh-c------cc--CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC--CeeEEEecC---CCCCCCCC
Q 021388 200 VVACPLTEETR-H------II--NREVIDALGPKGVLINIGRGPHVDERELVSALVEG--RLGGAGLDV---FENEPHVP 265 (313)
Q Consensus 200 ~~~lp~~~~t~-~------li--~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~--~l~ga~lDV---~~~Ep~~~ 265 (313)
++|+|. |-+. + +. .+...+.||+|.++|==|+-.+=.++.++..+.+. .+. ..-|. |.+|-..+
T Consensus 89 iI~VPT-Pl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~P 166 (436)
T COG0677 89 IICVPT-PLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEecC-CcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCC
Confidence 999983 3222 1 11 13466789999999999999999999999988774 343 34565 56665433
Q ss_pred -C---cccCCCceEEccCCCCCcHHHHHH
Q 021388 266 -E---ELFGLENVVLMPHVGSGTVETRKT 290 (313)
Q Consensus 266 -~---~L~~~pnv~lTPH~a~~t~~~~~~ 290 (313)
+ .+.+.|+| +||.|+.+.+.
T Consensus 167 G~~~~el~~~~kV-----IgG~tp~~~e~ 190 (436)
T COG0677 167 GNVLKELVNNPKV-----IGGVTPKCAEL 190 (436)
T ss_pred CchhhhhhcCCce-----eecCCHHHHHH
Confidence 2 46677887 47777654443
No 124
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.26 E-value=6.5e-06 Score=75.67 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=66.3
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||.|. +|+++|..|...|++|+++.+.. .++.+.+++||+|+.+++-. +++..
T Consensus 154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---------~~l~~~~~~ADIvi~avG~p----~~v~~-- 218 (285)
T PRK10792 154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---------KNLRHHVRNADLLVVAVGKP----GFIPG-- 218 (285)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---------CCHHHHHhhCCEEEEcCCCc----ccccH--
Confidence 3469999999999999 99999999999999999887542 36889999999999999522 35655
Q ss_pred HhccCCCcEEEEcCCCc
Q 021388 218 IDALGPKGVLINIGRGP 234 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~ 234 (313)
..+|+|+++||+|--.
T Consensus 219 -~~vk~gavVIDvGin~ 234 (285)
T PRK10792 219 -EWIKPGAIVIDVGINR 234 (285)
T ss_pred -HHcCCCcEEEEccccc
Confidence 4568999999999544
No 125
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.26 E-value=2e-06 Score=76.41 Aligned_cols=89 Identities=17% Similarity=0.147 Sum_probs=63.1
Q ss_pred CEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcc-------------cc---ccCCCHHHHhhcCCEEEEecCCCh
Q 021388 145 KTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNL-------------KY---KYYPSVVELASNCHILVVACPLTE 207 (313)
Q Consensus 145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------------~~---~~~~~l~e~~~~aDvV~~~lp~~~ 207 (313)
++|+||| .|+||+.+++.|...|++|.+++|+++... +. ....+..+.++++|+|++++|...
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~ 80 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH 80 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence 4799997 999999999999999999999998764321 11 012356778899999999999432
Q ss_pred hhhcccCHHHHhccCCCcEEEEcCCCccc
Q 021388 208 ETRHIINREVIDALGPKGVLINIGRGPHV 236 (313)
Q Consensus 208 ~t~~li~~~~l~~mk~ga~lIn~~rg~~v 236 (313)
...++ +++...++ +.++|++.-|--.
T Consensus 81 -~~~~l-~~l~~~l~-~~vvI~~~ngi~~ 106 (219)
T TIGR01915 81 -VLKTL-ESLRDELS-GKLVISPVVPLAS 106 (219)
T ss_pred -HHHHH-HHHHHhcc-CCEEEEeccCcee
Confidence 33333 33333444 5899999877433
No 126
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=98.26 E-value=9.2e-06 Score=70.43 Aligned_cols=89 Identities=15% Similarity=0.205 Sum_probs=67.0
Q ss_pred cccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCc------cccccC--CC----HHHHhhcCCEEEEecC
Q 021388 138 LTTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPN------LKYKYY--PS----VVELASNCHILVVACP 204 (313)
Q Consensus 138 ~~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~------~~~~~~--~~----l~e~~~~aDvV~~~lp 204 (313)
.+.++.||++.|||-+. +|+++|..|...|++|+.+|.+.-.. ..-... .+ +.+.+++||+|+.+++
T Consensus 56 ~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG 135 (197)
T cd01079 56 YGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVP 135 (197)
T ss_pred cCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccC
Confidence 46789999999999986 69999999999999999996432110 000011 12 7789999999999998
Q ss_pred CChhhhcc-cCHHHHhccCCCcEEEEcCCC
Q 021388 205 LTEETRHI-INREVIDALGPKGVLINIGRG 233 (313)
Q Consensus 205 ~~~~t~~l-i~~~~l~~mk~ga~lIn~~rg 233 (313)
- .++ +..+. .|+|+++||+|--
T Consensus 136 ~----~~~~i~~d~---ik~GavVIDVGi~ 158 (197)
T cd01079 136 S----PNYKVPTEL---LKDGAICINFASI 158 (197)
T ss_pred C----CCCccCHHH---cCCCcEEEEcCCC
Confidence 3 345 66655 5799999999843
No 127
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=98.25 E-value=4.8e-06 Score=70.41 Aligned_cols=81 Identities=19% Similarity=0.304 Sum_probs=59.0
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||-+. +|++++..|...|+.|..++... .++++.+++||+|+.+++ ..++|..+
T Consensus 31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------~~l~~~~~~ADIVVsa~G----~~~~i~~~- 96 (160)
T PF02882_consen 31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------KNLQEITRRADIVVSAVG----KPNLIKAD- 96 (160)
T ss_dssp T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------SSHHHHHTTSSEEEE-SS----STT-B-GG-
T ss_pred CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------CcccceeeeccEEeeeec----cccccccc-
Confidence 4469999999999995 99999999999999999887543 368899999999999997 34556554
Q ss_pred HhccCCCcEEEEcCCCcc
Q 021388 218 IDALGPKGVLINIGRGPH 235 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~~ 235 (313)
.+|+|+++||+|.-..
T Consensus 97 --~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 97 --WIKPGAVVIDVGINYV 112 (160)
T ss_dssp --GS-TTEEEEE--CEEE
T ss_pred --cccCCcEEEecCCccc
Confidence 4689999999998765
No 128
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.24 E-value=6e-06 Score=75.30 Aligned_cols=99 Identities=21% Similarity=0.230 Sum_probs=76.7
Q ss_pred CEEEEEcCChHHHHHHHHHHhCC----CCEEEecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCChhhhcccC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFS----CPINYYSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTEETRHIIN 214 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G----~~V~~~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~ 214 (313)
++|||||+|+||++|+..|...| .+|++.+|+.+... +.....+.+++..++|+|++++. |+.-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq~~---- 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQDL---- 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hHhH----
Confidence 58999999999999999999888 47999999876432 22235667789999999999996 4322
Q ss_pred HHHHhccC---CCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388 215 REVIDALG---PKGVLINIGRGPHVDERELVSALVEGRLG 251 (313)
Q Consensus 215 ~~~l~~mk---~ga~lIn~~rg~~vd~~al~~al~~~~l~ 251 (313)
.+.++.++ ++.++|.+.-| +..+.|.+++.+.++.
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~vv 113 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRVV 113 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCceE
Confidence 45555565 78999999988 7888888888744443
No 129
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.23 E-value=4.8e-06 Score=71.88 Aligned_cols=98 Identities=19% Similarity=0.291 Sum_probs=69.0
Q ss_pred EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhcC
Q 021388 146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASNC 196 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~a 196 (313)
+|+|||.|.||+.+|..+...|++|..||++++... + .....+++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 689999999999999999999999999999775210 0 11246788877 99
Q ss_pred CEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHH
Q 021388 197 HILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALV 246 (313)
Q Consensus 197 DvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~ 246 (313)
|+|+=++|...+.+.-+-+++-+.++++++|...+.+ .....|.+.+.
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~ 127 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALS 127 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSS
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccC
Confidence 9999999988887776667777788899988554433 44556666653
No 130
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=98.22 E-value=8.9e-06 Score=73.19 Aligned_cols=101 Identities=17% Similarity=0.228 Sum_probs=69.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCC---CC-EEEecCC-CCCc------cccccCCCHHHHhhcCCEEEEecCCChhhhc
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFS---CP-INYYSRT-EKPN------LKYKYYPSVVELASNCHILVVACPLTEETRH 211 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G---~~-V~~~~~~-~~~~------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~ 211 (313)
..++|||||.|+||+.+++.+...| .+ +++++++ ++.. .+.....+.+++++++|+|++++|.. ..+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence 3578999999999999999998765 33 6677764 3221 12334567888999999999999933 2233
Q ss_pred ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388 212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEG 248 (313)
Q Consensus 212 li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~ 248 (313)
++ ++....++ +.++|.++-| ++.+.|.+.+..+
T Consensus 82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 33 33333344 6788998877 5666777776544
No 131
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.19 E-value=5.5e-06 Score=75.95 Aligned_cols=80 Identities=16% Similarity=0.271 Sum_probs=67.9
Q ss_pred ccccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.|+++.|+|.+ ..|+++|..|...|++|..+.+.. .++.+.+++||+|+.+++-. +++.++.
T Consensus 147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t---------~~L~~~~~~ADIvI~Avgk~----~lv~~~~ 213 (279)
T PRK14178 147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT---------ENLKAELRQADILVSAAGKA----GFITPDM 213 (279)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh---------hHHHHHHhhCCEEEECCCcc----cccCHHH
Confidence 346999999999999 899999999999999998877542 36889999999999999632 5787777
Q ss_pred HhccCCCcEEEEcCCCc
Q 021388 218 IDALGPKGVLINIGRGP 234 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~ 234 (313)
+ |+|+++||+|-..
T Consensus 214 v---k~GavVIDVgi~~ 227 (279)
T PRK14178 214 V---KPGATVIDVGINQ 227 (279)
T ss_pred c---CCCcEEEEeeccc
Confidence 4 9999999998654
No 132
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=98.19 E-value=2e-05 Score=65.21 Aligned_cols=80 Identities=15% Similarity=0.236 Sum_probs=67.0
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|+|-+. .|+.++..|...|++|...++.. .++++.+++||+|+.+++.. +++..+.
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------~~l~~~v~~ADIVvsAtg~~----~~i~~~~ 89 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------IQLQSKVHDADVVVVGSPKP----EKVPTEW 89 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecCCC----CccCHHH
Confidence 4579999999999875 78999999999999999887543 26889999999999999844 4676655
Q ss_pred HhccCCCcEEEEcCCCc
Q 021388 218 IDALGPKGVLINIGRGP 234 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~ 234 (313)
+|||++++|++...
T Consensus 90 ---ikpGa~Vidvg~~~ 103 (140)
T cd05212 90 ---IKPGATVINCSPTK 103 (140)
T ss_pred ---cCCCCEEEEcCCCc
Confidence 68999999998765
No 133
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.19 E-value=1.9e-05 Score=77.94 Aligned_cols=130 Identities=14% Similarity=0.138 Sum_probs=91.1
Q ss_pred CEEEEEcCChHHHHHHHHHHhC--CCCEEEecCCCCCcc------------c------------cccCCCHHHHhhcCCE
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAF--SCPINYYSRTEKPNL------------K------------YKYYPSVVELASNCHI 198 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~--G~~V~~~~~~~~~~~------------~------------~~~~~~l~e~~~~aDv 198 (313)
++|+|||+|.+|..+|..|... |++|+++|.+++... + .....+..+.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5899999999999999999966 588999997664210 0 1122456778899999
Q ss_pred EEEecCCChhh-----------hccc--CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEec---CCCCCC
Q 021388 199 LVVACPLTEET-----------RHII--NREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD---VFENEP 262 (313)
Q Consensus 199 V~~~lp~~~~t-----------~~li--~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lD---V~~~Ep 262 (313)
+++|+|..... ..+. -++..+.+++|.++|.-|+..+=..+.+...+.+.. .| .| +|.+|-
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g--~~f~v~~~PEr 158 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KG--INFQILSNPEF 158 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CC--CCeEEEECCCc
Confidence 99999733211 1111 245666789999999999988888888888887631 11 22 256776
Q ss_pred CCC----CcccCCCceEEc
Q 021388 263 HVP----EELFGLENVVLM 277 (313)
Q Consensus 263 ~~~----~~L~~~pnv~lT 277 (313)
+.+ ..+...|+|++-
T Consensus 159 l~~G~a~~d~~~p~riViG 177 (473)
T PLN02353 159 LAEGTAIEDLFKPDRVLIG 177 (473)
T ss_pred cCCCCcccccCCCCEEEEc
Confidence 654 257778888753
No 134
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.18 E-value=8.1e-06 Score=75.09 Aligned_cols=79 Identities=19% Similarity=0.317 Sum_probs=66.0
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||.|. +|+++|..|...|++|.++.... .++.+..++||+|+.++.- .+++..+
T Consensus 159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T---------~~l~~~~~~ADIvv~AvG~----p~~i~~~- 224 (287)
T PRK14176 159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT---------DDLKKYTLDADILVVATGV----KHLIKAD- 224 (287)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC---------CCHHHHHhhCCEEEEccCC----ccccCHH-
Confidence 4479999999999999 99999999999999999887432 2688999999999998763 2456665
Q ss_pred HhccCCCcEEEEcCCC
Q 021388 218 IDALGPKGVLINIGRG 233 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg 233 (313)
.+|+|+++||+|--
T Consensus 225 --~vk~gavVIDvGin 238 (287)
T PRK14176 225 --MVKEGAVIFDVGIT 238 (287)
T ss_pred --HcCCCcEEEEeccc
Confidence 57899999999864
No 135
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.17 E-value=1.8e-05 Score=73.50 Aligned_cols=135 Identities=14% Similarity=0.187 Sum_probs=92.0
Q ss_pred CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----cccccCCCHHHHh-hcCCEEEEecCCChhhhcccCHHHH
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----LKYKYYPSVVELA-SNCHILVVACPLTEETRHIINREVI 218 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----~~~~~~~~l~e~~-~~aDvV~~~lp~~~~t~~li~~~~l 218 (313)
-.+|||||+|+||+-.|+.+...|+.|.+.||+.-.. .|...++.+.+++ ++.|+|++|+.. ..+..++.---+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilatypf 130 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILATYPF 130 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHhcCc
Confidence 3689999999999999999999999999999976432 2344566777766 569999999863 234444433345
Q ss_pred hccCCCcEEEEcCCCccccHHHHHHHHHhC-CeeEEEecCCCCCCCCCCcccCCCceEEccCCC
Q 021388 219 DALGPKGVLINIGRGPHVDERELVSALVEG-RLGGAGLDVFENEPHVPEELFGLENVVLMPHVG 281 (313)
Q Consensus 219 ~~mk~ga~lIn~~rg~~vd~~al~~al~~~-~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a 281 (313)
+.+|.|++++++-.-..-..+++.+-|-+. .|. ..=-.|.++. .++....+|=|+.--.++
T Consensus 131 qrlrrgtlfvdvlSvKefek~lfekYLPkdfDIl-ctHpmfGPks-vnh~wqglpfVydkvRig 192 (480)
T KOG2380|consen 131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDIL-CTHPMFGPKS-VNHEWQGLPFVYDKVRIG 192 (480)
T ss_pred hhhccceeEeeeeecchhHHHHHHHhCccccceE-eecCCcCCCc-CCCccccCceEEEEeecc
Confidence 668999999999888777777777766432 232 2222333331 233456677766655444
No 136
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.17 E-value=3.3e-05 Score=69.14 Aligned_cols=149 Identities=14% Similarity=0.112 Sum_probs=98.9
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCCC---EEEecCCC----CCcc-----------cc--ccC-CCHHHHhhcCCE
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCP---INYYSRTE----KPNL-----------KY--KYY-PSVVELASNCHI 198 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~---V~~~~~~~----~~~~-----------~~--~~~-~~l~e~~~~aDv 198 (313)
.++.++++.|+|.|.+|+.+|..|...|++ ++.+||+. +... .. ... .++.+.++++|+
T Consensus 21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dv 100 (226)
T cd05311 21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADV 100 (226)
T ss_pred CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCE
Confidence 358889999999999999999999999985 99999983 2210 00 011 257778889999
Q ss_pred EEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCC-eeEEEecCCCCCCCCCCcccCCCceEEc
Q 021388 199 LVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGR-LGGAGLDVFENEPHVPEELFGLENVVLM 277 (313)
Q Consensus 199 V~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~-l~ga~lDV~~~Ep~~~~~L~~~pnv~lT 277 (313)
|+.+.| .++++.+.++.|+++.++.+.+. ...+.-+.++.+.|- +. .|-. +. -..|..|+++-
T Consensus 101 lIgaT~-----~G~~~~~~l~~m~~~~ivf~lsn--P~~e~~~~~A~~~ga~i~---a~G~--~~----~~~Q~nn~~~f 164 (226)
T cd05311 101 FIGVSR-----PGVVKKEMIKKMAKDPIVFALAN--PVPEIWPEEAKEAGADIV---ATGR--SD----FPNQVNNVLGF 164 (226)
T ss_pred EEeCCC-----CCCCCHHHHHhhCCCCEEEEeCC--CCCcCCHHHHHHcCCcEE---EeCC--CC----Cccccceeeec
Confidence 999886 35678889999999999998883 334444444444433 22 2221 11 23478899999
Q ss_pred cCCCCCcHH-----HHHHHHHHHHHHHHHHHc
Q 021388 278 PHVGSGTVE-----TRKTMADLVLGNLEAHFL 304 (313)
Q Consensus 278 PH~a~~t~~-----~~~~~~~~~~~nl~~~~~ 304 (313)
|=++-..-. .-+.|...+++-|.++..
T Consensus 165 Pg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~ 196 (226)
T cd05311 165 PGIFRGALDVRATKITEEMKLAAAEAIADLAE 196 (226)
T ss_pred chhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence 977643221 124555555555555543
No 137
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.16 E-value=1e-05 Score=74.75 Aligned_cols=80 Identities=18% Similarity=0.296 Sum_probs=66.1
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||.|. .|++++..|...|++|.++++. ..++.+.++++|+|+.+++. + +.+..+.
T Consensus 154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~---------t~~L~~~~~~aDIvI~AtG~-~---~~v~~~~ 220 (283)
T PRK14192 154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR---------TQNLPELVKQADIIVGAVGK-P---ELIKKDW 220 (283)
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC---------chhHHHHhccCCEEEEccCC-C---CcCCHHH
Confidence 4468999999999998 9999999999999999998873 23577888999999999962 2 2566544
Q ss_pred HhccCCCcEEEEcCCCc
Q 021388 218 IDALGPKGVLINIGRGP 234 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~ 234 (313)
+|+|++++|++-..
T Consensus 221 ---lk~gavViDvg~n~ 234 (283)
T PRK14192 221 ---IKQGAVVVDAGFHP 234 (283)
T ss_pred ---cCCCCEEEEEEEee
Confidence 78999999998654
No 138
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.14 E-value=7.4e-06 Score=75.05 Aligned_cols=102 Identities=20% Similarity=0.227 Sum_probs=71.2
Q ss_pred CEEEEEcCChHHHHHHHHHHhC--CCC-EEEecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAF--SCP-INYYSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~--G~~-V~~~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~ 215 (313)
++|||||+|.||+.+++.+... +++ +.++|++++... +...+.++++++.++|+|+.|.|.. ... +
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~--~~~---~ 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN--AVE---E 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH--HHH---H
Confidence 4799999999999999998865 466 457888764321 2234578999889999999998732 221 1
Q ss_pred HHHhccCCCcEEEEcCCCccccH---HHHHHHHHhCCee
Q 021388 216 EVIDALGPKGVLINIGRGPHVDE---RELVSALVEGRLG 251 (313)
Q Consensus 216 ~~l~~mk~ga~lIn~~rg~~vd~---~al~~al~~~~l~ 251 (313)
-....++.|.-++..+.|.+.|. +.|.++.++++..
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~ 115 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK 115 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence 22334556766777888877764 4677777776644
No 139
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.14 E-value=1.8e-05 Score=78.64 Aligned_cols=178 Identities=17% Similarity=0.270 Sum_probs=105.3
Q ss_pred CceEEEEeCCCCCCHHHHhhCCC-ccEEEEcCcCCCcCChhhhhhcCcEEEcCCCCC----------hHHHHHHHHHHHH
Q 021388 45 NIRAVVGNATAGADAELIDALPK-LEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVL----------TDDVADLAIGLML 113 (313)
Q Consensus 45 ~~~~i~~~~~~~~~~~~l~~~~~-Lk~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~----------~~~vAE~al~~~L 113 (313)
++|+|+.-. . .+.+.++.++. --+|+......|.=-++++.++||.+..---.. =.++|+.+
T Consensus 65 ~~diilkV~-~-P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IA----- 137 (509)
T PRK09424 65 QSDIILKVN-A-PSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIA----- 137 (509)
T ss_pred cCCEEEEeC-C-CCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhh-----
Confidence 578887522 2 34555777654 456666666555444677888998877632111 12333332
Q ss_pred HHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccC--
Q 021388 114 AVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYY-- 186 (313)
Q Consensus 114 ~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~-- 186 (313)
-+|-+.+..+. -++.............+.++.|+|.|.+|...++.++.+|++|.++|++++.. .|....
T Consensus 138 -Gy~Av~~aa~~--~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i 214 (509)
T PRK09424 138 -GYRAVIEAAHE--FGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLEL 214 (509)
T ss_pred -HHHHHHHHHHH--hcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEe
Confidence 12222211111 11111110001113579999999999999999999999999999999876531 122100
Q ss_pred -----------------CCH--------HHHhhcCCEEEEecCCChh-hhcccCHHHHhccCCCcEEEEcCC
Q 021388 187 -----------------PSV--------VELASNCHILVVACPLTEE-TRHIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 187 -----------------~~l--------~e~~~~aDvV~~~lp~~~~-t~~li~~~~l~~mk~ga~lIn~~r 232 (313)
.+. .+.++.+|+|+.+...... ...++.++.++.||+|+++|++|-
T Consensus 215 ~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 215 DFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred ccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 010 1112569999998854221 234556889999999999999974
No 140
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.14 E-value=9.8e-06 Score=76.57 Aligned_cols=103 Identities=15% Similarity=0.221 Sum_probs=73.9
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----cccc-----------------cCCCHHHHhhcCCEEEEec
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----LKYK-----------------YYPSVVELASNCHILVVAC 203 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----~~~~-----------------~~~~l~e~~~~aDvV~~~l 203 (313)
++|+|||.|.||..+|..|...|++|.+++|++... .+.. ...+. +.+..+|+|++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence 579999999999999999999999999999864210 1110 12233 5678999999999
Q ss_pred CCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388 204 PLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG 251 (313)
Q Consensus 204 p~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ 251 (313)
+.. +...++ ++..+.++++.+++.+.-| +...+.+.+.+.+.++.
T Consensus 82 k~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~ 126 (341)
T PRK08229 82 KSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVL 126 (341)
T ss_pred cCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEE
Confidence 854 344444 5566778899999888654 44556677777665543
No 141
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.13 E-value=2.7e-06 Score=72.55 Aligned_cols=91 Identities=15% Similarity=0.291 Sum_probs=66.0
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----c---cc-----------------------cCCCH
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----K---YK-----------------------YYPSV 189 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~---~~-----------------------~~~~l 189 (313)
.+...++.|+|.|+.|+..++.++++|++|..+|....... . .. ....+
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 46778999999999999999999999999999987653110 0 00 01236
Q ss_pred HHHhhcCCEEEEec-CCChhhhcccCHHHHhccCCCcEEEEcC
Q 021388 190 VELASNCHILVVAC-PLTEETRHIINREVIDALGPKGVLINIG 231 (313)
Q Consensus 190 ~e~~~~aDvV~~~l-p~~~~t~~li~~~~l~~mk~ga~lIn~~ 231 (313)
.+.++.+|+|+.++ -.......++.++.++.||+|.+++|++
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 67889999988644 4455677799999999999999999986
No 142
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.12 E-value=6e-05 Score=69.42 Aligned_cols=134 Identities=19% Similarity=0.179 Sum_probs=88.8
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||-+. +|+++|..|...|+.|+.+.... .++++.+++||+|+.++. ..+++..+.
T Consensus 150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------~~l~~~~~~ADIvIsAvG----kp~~i~~~~ 216 (287)
T PRK14173 150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------QDLPAVTRRADVLVVAVG----RPHLITPEM 216 (287)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecC----CcCccCHHH
Confidence 4579999999999875 79999999999999998876432 268899999999999997 335777765
Q ss_pred HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHH
Q 021388 218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLG 297 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~ 297 (313)
.|+|+++||+|.-.+.+ ++|+. ...=||- .+- .+... .+||--||--.-+..-+.+..++
T Consensus 217 ---vk~GavVIDVGin~~~~--------~~gk~-~l~GDVd-~~v------~~~a~-~iTPVPGGVGp~T~a~L~~N~~~ 276 (287)
T PRK14173 217 ---VRPGAVVVDVGINRVGG--------NGGRD-ILTGDVH-PEV------AEVAG-ALTPVPGGVGPMTVAMLMANTVI 276 (287)
T ss_pred ---cCCCCEEEEccCccccC--------CCCce-eeecccc-HhH------HhhCc-EEecCCCChhHHHHHHHHHHHHH
Confidence 48999999999766432 13441 0244553 111 11111 68897777554433333333333
Q ss_pred HHHHHHcC
Q 021388 298 NLEAHFLN 305 (313)
Q Consensus 298 nl~~~~~g 305 (313)
-.++...|
T Consensus 277 a~~~~~~~ 284 (287)
T PRK14173 277 AALRRRGG 284 (287)
T ss_pred HHHHHccC
Confidence 33444444
No 143
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.09 E-value=2.2e-05 Score=72.26 Aligned_cols=114 Identities=21% Similarity=0.297 Sum_probs=82.7
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||-+. +|+++|..|...|+.|+.+... ..++.+.+++||+|+.+++ ..+++..+.
T Consensus 153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~---------t~~l~~~~~~ADIvI~AvG----~p~~i~~~~ 219 (284)
T PRK14190 153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK---------TKNLAELTKQADILIVAVG----KPKLITADM 219 (284)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC---------chhHHHHHHhCCEEEEecC----CCCcCCHHH
Confidence 4479999999999886 7999999999999999987642 2368899999999999996 345788776
Q ss_pred HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHH
Q 021388 218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETR 288 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~ 288 (313)
+ |+|+++||+|.-.+. +|++. =||-. | ...+.. -.+||.-||--.-+.
T Consensus 220 i---k~gavVIDvGi~~~~----------~gkl~---GDvd~-e-----~v~~~a-~~iTPVPGGVGpvT~ 267 (284)
T PRK14190 220 V---KEGAVVIDVGVNRLE----------NGKLC---GDVDF-D-----NVKEKA-SYITPVPGGVGPMTI 267 (284)
T ss_pred c---CCCCEEEEeeccccC----------CCCee---ccCcH-H-----HHhhhc-eEecCCCCCChHHHH
Confidence 5 899999999976532 34443 35521 1 111111 268998787665433
No 144
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.08 E-value=4.5e-06 Score=76.66 Aligned_cols=90 Identities=16% Similarity=0.264 Sum_probs=72.1
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------ccc------cCCCHHHHhhcCCEEEEec--CCC
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYK------YYPSVVELASNCHILVVAC--PLT 206 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~------~~~~l~e~~~~aDvV~~~l--p~~ 206 (313)
.+...++.|||.|.+|...|+.+.++|.+|...|++.++.. +.+ ....+++.+.++|+|+-++ |.
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg- 243 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG- 243 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecC-
Confidence 36677999999999999999999999999999998854321 111 1235788999999999876 43
Q ss_pred hhhhcccCHHHHhccCCCcEEEEcC
Q 021388 207 EETRHIINREVIDALGPKGVLINIG 231 (313)
Q Consensus 207 ~~t~~li~~~~l~~mk~ga~lIn~~ 231 (313)
...-.++.++.+++||||+++||++
T Consensus 244 akaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 244 AKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCceehhHHHHHhcCCCcEEEEEE
Confidence 2455678899999999999999984
No 145
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.07 E-value=3e-05 Score=71.30 Aligned_cols=81 Identities=22% Similarity=0.383 Sum_probs=66.8
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||-+. +|+++|..|...|+.|+.+.... .++.+.+++||+|+.+++- .+++..+.
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG~----~~~i~~~~ 218 (284)
T PRK14170 152 GTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT---------KDLPQVAKEADILVVATGL----AKFVKKDY 218 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence 4579999999999986 69999999999999999876432 2588999999999999973 34676655
Q ss_pred HhccCCCcEEEEcCCCcc
Q 021388 218 IDALGPKGVLINIGRGPH 235 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~~ 235 (313)
.|+|+++||+|.-.+
T Consensus 219 ---vk~GavVIDvGin~~ 233 (284)
T PRK14170 219 ---IKPGAIVIDVGMDRD 233 (284)
T ss_pred ---cCCCCEEEEccCccc
Confidence 579999999997653
No 146
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.06 E-value=8.6e-05 Score=68.25 Aligned_cols=80 Identities=24% Similarity=0.387 Sum_probs=66.2
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||-+. +|+++|..|...|+.|+.+.... .++.+.+++||+|+.+++ -.+++..+.
T Consensus 151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T---------~~l~~~~~~ADIvI~AvG----~p~~i~~~~ 217 (282)
T PRK14169 151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT---------RNLKQLTKEADILVVAVG----VPHFIGADA 217 (282)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence 4579999999999986 79999999999999998875432 258899999999999997 345677765
Q ss_pred HhccCCCcEEEEcCCCc
Q 021388 218 IDALGPKGVLINIGRGP 234 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~ 234 (313)
+|+|+++||+|--.
T Consensus 218 ---vk~GavVIDvGin~ 231 (282)
T PRK14169 218 ---VKPGAVVIDVGISR 231 (282)
T ss_pred ---cCCCcEEEEeeccc
Confidence 57999999999654
No 147
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.05 E-value=5.3e-06 Score=80.81 Aligned_cols=94 Identities=21% Similarity=0.234 Sum_probs=69.0
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCC-CCEEEecCCCCCcc------ccc--cCCCHHHHhhcCCEEEEecCCChhhhc
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFS-CPINYYSRTEKPNL------KYK--YYPSVVELASNCHILVVACPLTEETRH 211 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~------~~~--~~~~l~e~~~~aDvV~~~lp~~~~t~~ 211 (313)
.+.|++++|+|.|.||+.+++.|+..| .+|.+++|+.+... +.. ...++.+.+..+|+|+.+++. +..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence 478899999999999999999999999 57999999865321 111 123566788899999999764 345
Q ss_pred ccCHHHHhccC----CCcEEEEcCCCcccc
Q 021388 212 IINREVIDALG----PKGVLINIGRGPHVD 237 (313)
Q Consensus 212 li~~~~l~~mk----~ga~lIn~~rg~~vd 237 (313)
+++.+.++.+. ...+++|.+...=+|
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid 283 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVD 283 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 67777776652 235888887544344
No 148
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.03 E-value=3.6e-05 Score=71.25 Aligned_cols=103 Identities=16% Similarity=0.161 Sum_probs=72.2
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----ccc-----------ccCCCHHHHhhcCCEEEEecCCChh
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKY-----------KYYPSVVELASNCHILVVACPLTEE 208 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~-----------~~~~~l~e~~~~aDvV~~~lp~~~~ 208 (313)
++|+|||.|.||..+|..|...|++|..++|+.+.. .+. ....+..++ +.+|+|++++|.. +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~-~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAY-Q 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccc-c
Confidence 479999999999999999999999999999854321 121 112345555 8899999999944 3
Q ss_pred hhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388 209 TRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG 251 (313)
Q Consensus 209 t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ 251 (313)
+..++ +.+.+.+.+++.+|....| +-..+.+.+.+....+.
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~ 119 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL 119 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence 44443 4555667778888887776 33355666666655554
No 149
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.03 E-value=2.5e-05 Score=71.71 Aligned_cols=80 Identities=15% Similarity=0.282 Sum_probs=66.1
Q ss_pred ccccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||-| .+|+++|..|...|+.|..+.... .++.+.+++||+|+.++. ..+++..+.
T Consensus 152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T---------~~l~~~~~~ADIvV~AvG----kp~~i~~~~ 218 (281)
T PRK14183 152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT---------KDLKAHTKKADIVIVGVG----KPNLITEDM 218 (281)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------cCHHHHHhhCCEEEEecC----cccccCHHH
Confidence 347999999999999 799999999999999998775422 258899999999999997 345676655
Q ss_pred HhccCCCcEEEEcCCCc
Q 021388 218 IDALGPKGVLINIGRGP 234 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~ 234 (313)
.|+|+++||+|--.
T Consensus 219 ---vk~gavvIDvGin~ 232 (281)
T PRK14183 219 ---VKEGAIVIDIGINR 232 (281)
T ss_pred ---cCCCcEEEEeeccc
Confidence 57999999999544
No 150
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.01 E-value=4.1e-05 Score=70.48 Aligned_cols=80 Identities=21% Similarity=0.372 Sum_probs=65.8
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||-+. +|++++..|...|+.|+.+.... .++.+.+++||+|+.++.- .+++..+.
T Consensus 154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T---------~~L~~~~~~ADIvV~AvGk----p~~i~~~~ 220 (288)
T PRK14171 154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT---------HNLSSITSKADIVVAAIGS----PLKLTAEY 220 (288)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCC----CCccCHHH
Confidence 3469999999999986 79999999999999999876432 3688999999999999973 35777665
Q ss_pred HhccCCCcEEEEcCCCc
Q 021388 218 IDALGPKGVLINIGRGP 234 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~ 234 (313)
.|+|+++||+|--.
T Consensus 221 ---vk~GavVIDvGin~ 234 (288)
T PRK14171 221 ---FNPESIVIDVGINR 234 (288)
T ss_pred ---cCCCCEEEEeeccc
Confidence 57999999999543
No 151
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.01 E-value=0.00011 Score=67.55 Aligned_cols=112 Identities=17% Similarity=0.330 Sum_probs=81.8
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHh--CCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEA--FSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~--~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~ 215 (313)
+.++.||++.|||-+. +|+++|..|.. .|+.|+.+... ..++.+.+++||+|+.+++- .+++..
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------T~~l~~~~k~ADIvV~AvGk----p~~i~~ 219 (284)
T PRK14193 153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------TRDLAAHTRRADIIVAAAGV----AHLVTA 219 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------CCCHHHHHHhCCEEEEecCC----cCccCH
Confidence 4579999999999875 79999999987 78999887643 23688999999999999973 356777
Q ss_pred HHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHH
Q 021388 216 EVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVET 287 (313)
Q Consensus 216 ~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~ 287 (313)
+. +|+|+++||+|.-.+ .+|++. =||- .+ ..+... .+||--||--.-+
T Consensus 220 ~~---ik~GavVIDvGin~~----------~~gkl~---GDvd-~~------v~~~a~-~iTPVPGGVGp~T 267 (284)
T PRK14193 220 DM---VKPGAAVLDVGVSRA----------GDGKLV---GDVH-PD------VWEVAG-AVSPNPGGVGPMT 267 (284)
T ss_pred HH---cCCCCEEEEcccccc----------CCCcEE---eecC-Hh------HHhhCC-EEeCCCCChhHHH
Confidence 65 579999999997653 245544 3654 11 111122 6899877766543
No 152
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.01 E-value=2.4e-05 Score=72.57 Aligned_cols=103 Identities=16% Similarity=0.217 Sum_probs=72.5
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC-----cccc-------------ccCCCHHHHhhcCCEEEEecCCC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP-----NLKY-------------KYYPSVVELASNCHILVVACPLT 206 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~-----~~~~-------------~~~~~l~e~~~~aDvV~~~lp~~ 206 (313)
++|+|||.|.||..+|..|...|++|..++| .+. ..+. ....+.++....+|+|++++|..
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence 4799999999999999999999999999998 321 1110 01234556668999999999954
Q ss_pred hhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388 207 EETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG 251 (313)
Q Consensus 207 ~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ 251 (313)
++..++ +...+.++++.++|.+.-| +-..+.+.+.+.+.++.
T Consensus 80 -~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 80 -QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred -CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 333333 4455567788888877665 44466777777665544
No 153
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.00 E-value=3.2e-05 Score=71.09 Aligned_cols=80 Identities=18% Similarity=0.319 Sum_probs=66.4
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||-+. +|+++|..|...|+.|+.++... .++.+..++||+|+.+++ ..+++..+.
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T---------~~l~~~~~~ADIvIsAvG----k~~~i~~~~ 220 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT---------QNLPSIVRQADIIVGAVG----KPEFIKADW 220 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEeCC----CcCccCHHH
Confidence 4579999999999986 79999999999999999887432 268899999999999997 345677655
Q ss_pred HhccCCCcEEEEcCCCc
Q 021388 218 IDALGPKGVLINIGRGP 234 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~ 234 (313)
.|+|+++||+|--.
T Consensus 221 ---ik~gavVIDvGin~ 234 (284)
T PRK14177 221 ---ISEGAVLLDAGYNP 234 (284)
T ss_pred ---cCCCCEEEEecCcc
Confidence 57999999999644
No 154
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.00 E-value=1.5e-05 Score=74.67 Aligned_cols=90 Identities=20% Similarity=0.286 Sum_probs=62.6
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcc------cccc--CCCHHHHhhcCCEEEEecCCChhhhcc
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNL------KYKY--YPSVVELASNCHILVVACPLTEETRHI 212 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~------~~~~--~~~l~e~~~~aDvV~~~lp~~~~t~~l 212 (313)
+.|++|+|||.|.||+.+++.++..|. +|.+++|+++... +... ..++.+.+.++|+|+.++|.... ..+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHH
Confidence 689999999999999999999998764 6889999865321 1111 23466778899999999985543 222
Q ss_pred cCHHHHhcc-CCCcEEEEcCCC
Q 021388 213 INREVIDAL-GPKGVLINIGRG 233 (313)
Q Consensus 213 i~~~~l~~m-k~ga~lIn~~rg 233 (313)
+ +..++.. +++.++||.+..
T Consensus 255 ~-~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCCC
Confidence 2 3233322 356788888753
No 155
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.00 E-value=6.4e-05 Score=70.18 Aligned_cols=152 Identities=17% Similarity=0.194 Sum_probs=117.1
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc----------cccCCCHHHH---hhcCCEEEEecCCChhhhc
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK----------YKYYPSVVEL---ASNCHILVVACPLTEETRH 211 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~----------~~~~~~l~e~---~~~aDvV~~~lp~~~~t~~ 211 (313)
..||+||++.||+.++-.....|+.|.+|+|+..+... .....|++++ +++-.+|++.+-.......
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 46899999999999999999999999999998764221 1234577776 5678888888865555555
Q ss_pred ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHH
Q 021388 212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKT 290 (313)
Q Consensus 212 li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~ 290 (313)
+| +++...|.+|-++||-+...--|+..-.+.|.+..+...+.-|...|--... | -+.| |.+.+++++
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-------SlMp---Gg~~~Awp~ 155 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-------SLMP---GGSKEAWPH 155 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-------ccCC---CCChHHHHH
Confidence 55 7788999999999999999999999999999999999999999888864321 3 2334 567788888
Q ss_pred HHHHHHHHHHHHHcCCC
Q 021388 291 MADLVLGNLEAHFLNKP 307 (313)
Q Consensus 291 ~~~~~~~nl~~~~~g~~ 307 (313)
+..++.+--...-.|+|
T Consensus 156 ik~ifq~iaakv~~~ep 172 (487)
T KOG2653|consen 156 IKDIFQKIAAKVSDGEP 172 (487)
T ss_pred HHHHHHHHHHHhcCCCC
Confidence 87776554333334555
No 156
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.99 E-value=2e-05 Score=73.57 Aligned_cols=94 Identities=20% Similarity=0.337 Sum_probs=70.4
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC-------------------ccccccCCCHHHHhhcCCEEEEecCC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP-------------------NLKYKYYPSVVELASNCHILVVACPL 205 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~-------------------~~~~~~~~~l~e~~~~aDvV~~~lp~ 205 (313)
++|+|||.|+.|.++|+.|...|++|..|.|+++. +.......++.++++.||+|++.+|.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 58999999999999999999999999999875431 01123457899999999999999993
Q ss_pred ChhhhcccCHHHHhccCCCcEEEEcCCCccccHHH
Q 021388 206 TEETRHIINREVIDALGPKGVLINIGRGPHVDERE 240 (313)
Q Consensus 206 ~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~a 240 (313)
. ..+.++ +++-..++++..+|+++.|=-.+.-.
T Consensus 82 ~-~~r~v~-~~l~~~l~~~~~iv~~sKGie~~t~~ 114 (329)
T COG0240 82 Q-ALREVL-RQLKPLLLKDAIIVSATKGLEPETGR 114 (329)
T ss_pred H-HHHHHH-HHHhhhccCCCeEEEEeccccCCCcc
Confidence 2 233333 33345678999999999875544333
No 157
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.99 E-value=5.1e-05 Score=69.59 Aligned_cols=80 Identities=23% Similarity=0.358 Sum_probs=66.4
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||-+. +|++++..|...|+.|+.+.... .++.+..++||+|+.+++ -.+++..+.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T---------~~l~~~~~~ADIvIsAvG----kp~~i~~~~ 219 (278)
T PRK14172 153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT---------KNLKEVCKKADILVVAIG----RPKFIDEEY 219 (278)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCC----CcCccCHHH
Confidence 3479999999999886 79999999999999999887432 268899999999999997 335677765
Q ss_pred HhccCCCcEEEEcCCCc
Q 021388 218 IDALGPKGVLINIGRGP 234 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~ 234 (313)
.|+|+++||+|--.
T Consensus 220 ---ik~gavVIDvGin~ 233 (278)
T PRK14172 220 ---VKEGAIVIDVGTSS 233 (278)
T ss_pred ---cCCCcEEEEeeccc
Confidence 58999999998654
No 158
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.98 E-value=3.6e-05 Score=71.27 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=83.5
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||-+. +|+++|..|...|++|+.+.... .++++.+++||+|+.+++- .+++..+.
T Consensus 153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T---------~~l~~~~~~ADIvIsAvGk----p~~i~~~~ 219 (297)
T PRK14186 153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT---------QDLASITREADILVAAAGR----PNLIGAEM 219 (297)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence 4579999999999986 79999999999999998875432 2688999999999999983 35677655
Q ss_pred HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHH
Q 021388 218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETR 288 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~ 288 (313)
.|+|+++||+|--.+.|.. ++|++ .=||-.. ...+.. -.+||--||--.-+.
T Consensus 220 ---ik~gavVIDvGin~~~~~~------~~gkl---~GDvd~~------~v~~~a-~~iTPVPGGVGp~T~ 271 (297)
T PRK14186 220 ---VKPGAVVVDVGIHRLPSSD------GKTRL---CGDVDFE------EVEPVA-AAITPVPGGVGPMTV 271 (297)
T ss_pred ---cCCCCEEEEeccccccccc------cCCce---eCCccHH------HHHhhc-eEecCCCCCchHHHH
Confidence 5799999999976543221 13544 3355311 111111 268999787665433
No 159
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.97 E-value=3.7e-05 Score=70.67 Aligned_cols=80 Identities=13% Similarity=0.260 Sum_probs=66.4
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||-+. +|+++|..|...|+.|+.+.... .++.+..++||+|+.++. -.+++..+.
T Consensus 152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------~nl~~~~~~ADIvIsAvG----kp~~i~~~~ 218 (282)
T PRK14166 152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------KDLSLYTRQADLIIVAAG----CVNLLRSDM 218 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCC----CcCccCHHH
Confidence 4579999999999986 79999999999999999876532 358899999999999997 345677765
Q ss_pred HhccCCCcEEEEcCCCc
Q 021388 218 IDALGPKGVLINIGRGP 234 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~ 234 (313)
.|+|+++||+|--.
T Consensus 219 ---vk~GavVIDvGin~ 232 (282)
T PRK14166 219 ---VKEGVIVVDVGINR 232 (282)
T ss_pred ---cCCCCEEEEecccc
Confidence 57999999999544
No 160
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.96 E-value=3e-05 Score=73.54 Aligned_cols=89 Identities=24% Similarity=0.291 Sum_probs=65.4
Q ss_pred EEEEEcCChHHHHHHHHHHhCC--------CCEEEecCCC-----C----------Cc---cc------cccCCCHHHHh
Q 021388 146 TVGIIGLGRIGMAVAKRAEAFS--------CPINYYSRTE-----K----------PN---LK------YKYYPSVVELA 193 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~G--------~~V~~~~~~~-----~----------~~---~~------~~~~~~l~e~~ 193 (313)
+|+|||.|++|.++|..|...| .+|..|.|.+ . .. .+ .....++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 4899999999999999998767 8999997732 1 00 01 11346789999
Q ss_pred hcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccc
Q 021388 194 SNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV 236 (313)
Q Consensus 194 ~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~v 236 (313)
+.||+|++++|.. ..+.+ -+++-..++++..+|+++.|=-.
T Consensus 81 ~~ADiIIlAVPs~-~i~~v-l~~l~~~l~~~~~iVs~tKGie~ 121 (342)
T TIGR03376 81 KGADILVFVIPHQ-FLEGI-CKQLKGHVKPNARAISCIKGLEV 121 (342)
T ss_pred hcCCEEEEECChH-HHHHH-HHHHHhhcCCCCEEEEEeCCccc
Confidence 9999999999932 23333 35556678889999999987433
No 161
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.95 E-value=4.1e-05 Score=70.70 Aligned_cols=80 Identities=18% Similarity=0.321 Sum_probs=66.6
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||-+. +|+++|..|...|+.|+.+.... .++.+.+++||+|+.+++ ..+++..+.
T Consensus 155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------~~l~~~~~~ADIvVsAvG----kp~~i~~~~ 221 (294)
T PRK14187 155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------RDLADYCSKADILVAAVG----IPNFVKYSW 221 (294)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence 4579999999999986 79999999999999999877532 368899999999999997 335677765
Q ss_pred HhccCCCcEEEEcCCCc
Q 021388 218 IDALGPKGVLINIGRGP 234 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~ 234 (313)
.|+|+++||+|--.
T Consensus 222 ---ik~gaiVIDVGin~ 235 (294)
T PRK14187 222 ---IKKGAIVIDVGINS 235 (294)
T ss_pred ---cCCCCEEEEecccc
Confidence 47999999998654
No 162
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.95 E-value=3.7e-05 Score=72.14 Aligned_cols=94 Identities=14% Similarity=0.149 Sum_probs=64.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHh-CC-CCEEEecCCCCCcc---------c--cccCCCHHHHhhcCCEEEEecCCChhh
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEA-FS-CPINYYSRTEKPNL---------K--YKYYPSVVELASNCHILVVACPLTEET 209 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~-~G-~~V~~~~~~~~~~~---------~--~~~~~~l~e~~~~aDvV~~~lp~~~~t 209 (313)
..++++|||.|.+|+.+++.+.. ++ .+|.+|+|++++.. + .....+.++.+++||+|+++.|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 46789999999999999986653 55 46999999876421 1 223467888999999998888754
Q ss_pred hcccCHHHHhccCCCcEEEEcCCCccccHHHHHH
Q 021388 210 RHIINREVIDALGPKGVLINIGRGPHVDERELVS 243 (313)
Q Consensus 210 ~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~ 243 (313)
..++.. +.+++|+. ||+.-........+-.
T Consensus 201 ~pvl~~---~~l~~g~~-i~~ig~~~~~~~El~~ 230 (314)
T PRK06141 201 EPLVRG---EWLKPGTH-LDLVGNFTPDMRECDD 230 (314)
T ss_pred CCEecH---HHcCCCCE-EEeeCCCCcccccCCH
Confidence 455655 34689995 5543333333333333
No 163
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.95 E-value=4.2e-05 Score=70.29 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=65.9
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||-+. +|+++|..|...|++|+.+.... .++.+..++||+|+.+++ ..+++..+.
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------~dl~~~~k~ADIvIsAvG----kp~~i~~~~ 219 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------TDLKSHTTKADILIVAVG----KPNFITADM 219 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------CCHHHHhhhcCEEEEccC----CcCcCCHHH
Confidence 4579999999999886 79999999999999999886432 268889999999999997 335677655
Q ss_pred HhccCCCcEEEEcCCCc
Q 021388 218 IDALGPKGVLINIGRGP 234 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~ 234 (313)
.|+|+++||+|--.
T Consensus 220 ---vk~gavVIDvGin~ 233 (282)
T PRK14180 220 ---VKEGAVVIDVGINH 233 (282)
T ss_pred ---cCCCcEEEEecccc
Confidence 57999999998543
No 164
>PLN00203 glutamyl-tRNA reductase
Probab=97.94 E-value=1.5e-05 Score=79.48 Aligned_cols=90 Identities=18% Similarity=0.318 Sum_probs=66.9
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcc-------cc----ccCCCHHHHhhcCCEEEEecCCChh
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNL-------KY----KYYPSVVELASNCHILVVACPLTEE 208 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~-------~~----~~~~~l~e~~~~aDvV~~~lp~~~~ 208 (313)
++.+++|+|||.|.||+.+++.|...|+ +|++++|+.+... +. ....++.+.+.++|+|+.++|.
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s--- 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS--- 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC---
Confidence 3778999999999999999999999998 5999999865321 11 1124566788999999998763
Q ss_pred hhcccCHHHHhccCCC-------cEEEEcCCC
Q 021388 209 TRHIINREVIDALGPK-------GVLINIGRG 233 (313)
Q Consensus 209 t~~li~~~~l~~mk~g-------a~lIn~~rg 233 (313)
...++..+.++.++++ .+|||.+-.
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvP 371 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVP 371 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence 3457778888776432 367777644
No 165
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.94 E-value=4.3e-05 Score=70.72 Aligned_cols=134 Identities=16% Similarity=0.197 Sum_probs=88.6
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||-+. +|+++|..|...|++|+.+.... .++++.+++||+|+.++.- .+++..+.
T Consensus 162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T---------~nl~~~~~~ADIvv~AvGk----~~~i~~~~ 228 (299)
T PLN02516 162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT---------PDPESIVREADIVIAAAGQ----AMMIKGDW 228 (299)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEcCCC----cCccCHHH
Confidence 4579999999999986 69999999999999999886432 3688999999999999863 36777665
Q ss_pred HhccCCCcEEEEcCCCccccHHHHHHHHHhC-CeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHH
Q 021388 218 IDALGPKGVLINIGRGPHVDERELVSALVEG-RLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVL 296 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~-~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~ 296 (313)
.|+|+++||+|--.+-+. ...+| + ..=||-..+- .+. --.+||--||--.-+..-+.+..+
T Consensus 229 ---vk~gavVIDvGin~~~~~-----~~~~g~k---l~GDvd~e~v------~~~-a~~iTPVPGGVGp~T~a~L~~N~v 290 (299)
T PLN02516 229 ---IKPGAAVIDVGTNAVSDP-----SKKSGYR---LVGDVDFAEV------SKV-AGWITPVPGGVGPMTVAMLLKNTV 290 (299)
T ss_pred ---cCCCCEEEEeeccccCcc-----cccCCCc---eEcCcChHHh------hhh-ceEecCCCCCchHHHHHHHHHHHH
Confidence 579999999996542221 11123 3 3446631111 011 125899777766544444444444
Q ss_pred HHHHHHH
Q 021388 297 GNLEAHF 303 (313)
Q Consensus 297 ~nl~~~~ 303 (313)
+--++++
T Consensus 291 ~a~~~~~ 297 (299)
T PLN02516 291 DGAKRVF 297 (299)
T ss_pred HHHHHHh
Confidence 3334443
No 166
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.94 E-value=3.7e-05 Score=73.52 Aligned_cols=93 Identities=16% Similarity=0.219 Sum_probs=65.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCC-------CCEEEecCCCCC------------------ccc------cccCCCHHH
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFS-------CPINYYSRTEKP------------------NLK------YKYYPSVVE 191 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G-------~~V~~~~~~~~~------------------~~~------~~~~~~l~e 191 (313)
..++|+|||.|++|.++|..|...| .+|..|.|++.. ..+ .....++++
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e 89 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE 89 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH
Confidence 3468999999999999999998765 789888776631 001 122467888
Q ss_pred HhhcCCEEEEecCCChhhhcccCHHHHh--ccCCCcEEEEcCCCcccc
Q 021388 192 LASNCHILVVACPLTEETRHIINREVID--ALGPKGVLINIGRGPHVD 237 (313)
Q Consensus 192 ~~~~aDvV~~~lp~~~~t~~li~~~~l~--~mk~ga~lIn~~rg~~vd 237 (313)
+++.+|+|++++|.. ..+.++ +++-. .+++++++|+++-|=-.+
T Consensus 90 av~~aDiIvlAVPsq-~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~ 135 (365)
T PTZ00345 90 AVEDADLLIFVIPHQ-FLESVL-SQIKENNNLKKHARAISLTKGIIVE 135 (365)
T ss_pred HHhcCCEEEEEcChH-HHHHHH-HHhccccccCCCCEEEEEeCCcccC
Confidence 999999999999922 233332 33334 466678999998874433
No 167
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.92 E-value=4.7e-05 Score=71.90 Aligned_cols=80 Identities=19% Similarity=0.358 Sum_probs=66.4
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||-+. +|+++|..|...|+.|+.+.... .++.+.+++||+|+.+++ ..+++..+.
T Consensus 226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T---------~nl~~~~r~ADIVIsAvG----kp~~i~~d~ 292 (364)
T PLN02616 226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT---------KNPEEITREADIIISAVG----QPNMVRGSW 292 (364)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC---------CCHHHHHhhCCEEEEcCC----CcCcCCHHH
Confidence 4469999999999986 79999999999999999876432 368899999999999997 345677765
Q ss_pred HhccCCCcEEEEcCCCc
Q 021388 218 IDALGPKGVLINIGRGP 234 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~ 234 (313)
.|+|+++||+|--.
T Consensus 293 ---vK~GAvVIDVGIn~ 306 (364)
T PLN02616 293 ---IKPGAVVIDVGINP 306 (364)
T ss_pred ---cCCCCEEEeccccc
Confidence 57999999999654
No 168
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.92 E-value=5.5e-05 Score=69.47 Aligned_cols=81 Identities=15% Similarity=0.188 Sum_probs=66.7
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||-+. +|+++|..|...|+.|+.+.... .++.+..++||+|+.+++- .+++..+.
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T---------~nl~~~~~~ADIvI~AvGk----~~~i~~~~ 218 (282)
T PRK14182 152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT---------ADLAGEVGRADILVAAIGK----AELVKGAW 218 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------CCHHHHHhhCCEEEEecCC----cCccCHHH
Confidence 3468999999999986 79999999999999999876432 2688999999999999973 45777765
Q ss_pred HhccCCCcEEEEcCCCcc
Q 021388 218 IDALGPKGVLINIGRGPH 235 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~~ 235 (313)
.|+|+++||+|--..
T Consensus 219 ---ik~gaiVIDvGin~~ 233 (282)
T PRK14182 219 ---VKEGAVVIDVGMNRL 233 (282)
T ss_pred ---cCCCCEEEEeeceec
Confidence 579999999996553
No 169
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=97.91 E-value=4.6e-05 Score=71.61 Aligned_cols=80 Identities=16% Similarity=0.351 Sum_probs=66.2
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.++.||++.|||-+. +|+++|..|...|+.|..+.... .++.+..++||+|+.+++ -.+++..+.
T Consensus 209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------~nl~~~~~~ADIvIsAvG----kp~~v~~d~ 275 (345)
T PLN02897 209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------KDPEQITRKADIVIAAAG----IPNLVRGSW 275 (345)
T ss_pred CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------CCHHHHHhhCCEEEEccC----CcCccCHHH
Confidence 4579999999999986 69999999999999998876432 258899999999999997 335677665
Q ss_pred HhccCCCcEEEEcCCCc
Q 021388 218 IDALGPKGVLINIGRGP 234 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~ 234 (313)
.|+|+++||+|--.
T Consensus 276 ---vk~GavVIDVGin~ 289 (345)
T PLN02897 276 ---LKPGAVVIDVGTTP 289 (345)
T ss_pred ---cCCCCEEEEccccc
Confidence 57999999999654
No 170
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.90 E-value=2.2e-05 Score=76.61 Aligned_cols=89 Identities=20% Similarity=0.263 Sum_probs=64.1
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcc------ccc--cCCCHHHHhhcCCEEEEecCCChhhhc
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNL------KYK--YYPSVVELASNCHILVVACPLTEETRH 211 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~------~~~--~~~~l~e~~~~aDvV~~~lp~~~~t~~ 211 (313)
.+.|++++|+|.|.||+.+++.|+..|+ +|++++|+.+... +.. ...++.+.+.++|+|+.++|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 3789999999999999999999999998 6999999865321 111 1234556778899999988643 33
Q ss_pred ccCHHHHhcc-----CCCcEEEEcCC
Q 021388 212 IINREVIDAL-----GPKGVLINIGR 232 (313)
Q Consensus 212 li~~~~l~~m-----k~ga~lIn~~r 232 (313)
++..+.++.+ +.+.++||.+-
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 4566666543 24567777764
No 171
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=6.5e-05 Score=69.15 Aligned_cols=81 Identities=17% Similarity=0.363 Sum_probs=65.7
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhC----CCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAF----SCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHII 213 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li 213 (313)
+.++.||++.|||-+. +|+++|..|... ++.|+.+.... .++.+.+++||+|+.+++- .+++
T Consensus 148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T---------~~l~~~~~~ADIvV~AvG~----p~~i 214 (287)
T PRK14181 148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS---------ENLTEILKTADIIIAAIGV----PLFI 214 (287)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 4479999999999986 799999999887 78888876422 2688999999999999973 3567
Q ss_pred CHHHHhccCCCcEEEEcCCCcc
Q 021388 214 NREVIDALGPKGVLINIGRGPH 235 (313)
Q Consensus 214 ~~~~l~~mk~ga~lIn~~rg~~ 235 (313)
..+. .|+|+++||+|--.+
T Consensus 215 ~~~~---ik~GavVIDvGin~~ 233 (287)
T PRK14181 215 KEEM---IAEKAVIVDVGTSRV 233 (287)
T ss_pred CHHH---cCCCCEEEEeccccc
Confidence 7765 579999999996553
No 172
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=5.5e-05 Score=69.68 Aligned_cols=80 Identities=18% Similarity=0.325 Sum_probs=65.8
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHh----CCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEA----FSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHII 213 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~----~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li 213 (313)
+.++.||++.|||-+. +|+++|..|.. .|++|..+.... .++.+.+++||+|+.+++ ..+++
T Consensus 152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t---------~~l~~~~~~ADIVI~AvG----~p~li 218 (286)
T PRK14184 152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT---------PDLAEECREADFLFVAIG----RPRFV 218 (286)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecC----CCCcC
Confidence 4568999999999986 79999999988 788988776432 268899999999999996 44568
Q ss_pred CHHHHhccCCCcEEEEcCCCc
Q 021388 214 NREVIDALGPKGVLINIGRGP 234 (313)
Q Consensus 214 ~~~~l~~mk~ga~lIn~~rg~ 234 (313)
..+.+ |+|+++||+|--.
T Consensus 219 ~~~~v---k~GavVIDVGi~~ 236 (286)
T PRK14184 219 TADMV---KPGAVVVDVGINR 236 (286)
T ss_pred CHHHc---CCCCEEEEeeeec
Confidence 77766 8999999998543
No 173
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.82 E-value=0.00011 Score=67.53 Aligned_cols=109 Identities=17% Similarity=0.076 Sum_probs=75.7
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc---------cccCCCHHH-HhhcCCEEEEecCCCh--hh
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK---------YKYYPSVVE-LASNCHILVVACPLTE--ET 209 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~---------~~~~~~l~e-~~~~aDvV~~~lp~~~--~t 209 (313)
..+++++|+|.|.+|++++..+...|++|.+++|+.++... .....++++ ...++|+|+.++|..- ..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 46789999999999999999999999999999988653211 111123333 2357999999999642 11
Q ss_pred hc-ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388 210 RH-IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV 257 (313)
Q Consensus 210 ~~-li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV 257 (313)
.. .+. ...++++.+++|+.-.+... .|.++.++.++. .+|-
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~--~vdG 236 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTK--TIDG 236 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCe--eeCC
Confidence 11 122 34578999999998876533 577777777665 4454
No 174
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.82 E-value=8.2e-05 Score=68.90 Aligned_cols=80 Identities=18% Similarity=0.360 Sum_probs=65.1
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHh----CCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEA----FSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHII 213 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~----~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li 213 (313)
+.++.||++.|||-+. +|+++|..|.. .|++|....... .++.+.+++||+|+.+++.. +++
T Consensus 154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t---------~~l~~~~~~ADIvI~Avg~~----~li 220 (295)
T PRK14174 154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT---------KDIPSYTRQADILIAAIGKA----RFI 220 (295)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc---------hhHHHHHHhCCEEEEecCcc----Ccc
Confidence 3469999999999986 79999999986 578888766432 25889999999999999632 678
Q ss_pred CHHHHhccCCCcEEEEcCCCc
Q 021388 214 NREVIDALGPKGVLINIGRGP 234 (313)
Q Consensus 214 ~~~~l~~mk~ga~lIn~~rg~ 234 (313)
..+.+ |+|+++||+|-..
T Consensus 221 ~~~~v---k~GavVIDVgi~~ 238 (295)
T PRK14174 221 TADMV---KPGAVVIDVGINR 238 (295)
T ss_pred CHHHc---CCCCEEEEeeccc
Confidence 88776 8999999998554
No 175
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=97.80 E-value=7.6e-05 Score=68.13 Aligned_cols=115 Identities=22% Similarity=0.281 Sum_probs=84.3
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.+++|+++.|||-|+ +|++++..|...++.|.++.... .++.+..++||+|+.++- -.+++..+
T Consensus 151 ~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------~~l~~~~k~ADIvv~AvG----~p~~i~~d- 216 (283)
T COG0190 151 GIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------KDLASITKNADIVVVAVG----KPHFIKAD- 216 (283)
T ss_pred CCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------CCHHHHhhhCCEEEEecC----Cccccccc-
Confidence 4479999999999998 58999999999999999887543 368899999999999986 33566544
Q ss_pred HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHH
Q 021388 218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRK 289 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~ 289 (313)
..|+|+++||+|--.+-+ +++ .=||-..+. ..-.-.+||--||--.-+..
T Consensus 217 --~vk~gavVIDVGinrv~~----------~kl---~GDVdf~~v-------~~~a~~iTPVPGGVGPmTva 266 (283)
T COG0190 217 --MVKPGAVVIDVGINRVND----------GKL---VGDVDFDSV-------KEKASAITPVPGGVGPMTVA 266 (283)
T ss_pred --cccCCCEEEecCCccccC----------Cce---EeeccHHHH-------HHhhcccCCCCCccCHHHHH
Confidence 468999999999766544 555 446632221 11222688888887764443
No 176
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.79 E-value=0.00011 Score=67.75 Aligned_cols=80 Identities=14% Similarity=0.293 Sum_probs=64.4
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhC----CCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAF----SCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHII 213 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li 213 (313)
+.++.||++.|||-+. +|+++|..|... ++.|.++.... .++.+.+++||+|+.+++- .+++
T Consensus 152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------~nl~~~~~~ADIvIsAvGk----p~~i 218 (293)
T PRK14185 152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---------KNLKKECLEADIIIAALGQ----PEFV 218 (293)
T ss_pred CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 3469999999999986 799999999876 68888775322 2688999999999999973 3467
Q ss_pred CHHHHhccCCCcEEEEcCCCc
Q 021388 214 NREVIDALGPKGVLINIGRGP 234 (313)
Q Consensus 214 ~~~~l~~mk~ga~lIn~~rg~ 234 (313)
..+. .|+|+++||+|--.
T Consensus 219 ~~~~---vk~gavVIDvGin~ 236 (293)
T PRK14185 219 KADM---VKEGAVVIDVGTTR 236 (293)
T ss_pred CHHH---cCCCCEEEEecCcc
Confidence 6654 58999999999654
No 177
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.77 E-value=5.3e-05 Score=69.85 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=69.3
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCC-CCEEEecCCCCCcccc----------ccCCCHHHHhhcCCEEEEecCCChhh
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFS-CPINYYSRTEKPNLKY----------KYYPSVVELASNCHILVVACPLTEET 209 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~~~----------~~~~~l~e~~~~aDvV~~~lp~~~~t 209 (313)
.+.++++.|+|.|.+|++++..|...| .+|.+++|+.++.... ....++.+.+.++|+|+.++|.....
T Consensus 120 ~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~ 199 (278)
T PRK00258 120 DLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG 199 (278)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC
Confidence 478899999999999999999999999 5899999986532110 00013346678899999999865321
Q ss_pred hcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCe
Q 021388 210 RHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRL 250 (313)
Q Consensus 210 ~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l 250 (313)
..-...-....++++.+++|+.=.+ ..+ .|+++.++.++
T Consensus 200 ~~~~~~~~~~~l~~~~~v~DivY~P-~~T-~ll~~A~~~G~ 238 (278)
T PRK00258 200 ELPLPPLPLSLLRPGTIVYDMIYGP-LPT-PFLAWAKAQGA 238 (278)
T ss_pred CCCCCCCCHHHcCCCCEEEEeecCC-CCC-HHHHHHHHCcC
Confidence 1101111224557778888876533 233 34444444433
No 178
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.75 E-value=0.00013 Score=67.47 Aligned_cols=134 Identities=16% Similarity=0.192 Sum_probs=86.1
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhC----CCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAF----SCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHII 213 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li 213 (313)
+.++.||++.|||-+. +|+++|..|... ++.|+.+.... .++.+.+++||+|+.++. -.+++
T Consensus 156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T---------~~l~~~~~~ADIvVsAvG----kp~~i 222 (297)
T PRK14168 156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS---------KNLARHCQRADILIVAAG----VPNLV 222 (297)
T ss_pred CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC---------cCHHHHHhhCCEEEEecC----CcCcc
Confidence 4579999999999886 799999999876 78898775332 268899999999999986 33467
Q ss_pred CHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHH
Q 021388 214 NREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMAD 293 (313)
Q Consensus 214 ~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~ 293 (313)
..+. .|+|+++||+|.-.+.+. .++|+.. ..=||-. | ...+.. -.+||--||--.-+..-+.+
T Consensus 223 ~~~~---ik~gavVIDvGin~~~~~------~~~g~~~-~~GDVdf-e-----~v~~~a-~~iTPVPGGVGp~T~a~L~~ 285 (297)
T PRK14168 223 KPEW---IKPGATVIDVGVNRVGTN------ESTGKAI-LSGDVDF-D-----AVKEIA-GKITPVPGGVGPMTIAMLMR 285 (297)
T ss_pred CHHH---cCCCCEEEecCCCccCcc------ccCCCcc-eeccccH-H-----HHHhhc-cEecCCCCCchHHHHHHHHH
Confidence 6655 579999999996553211 1234310 2445531 1 111111 26889877766544444444
Q ss_pred HHHHHHHHH
Q 021388 294 LVLGNLEAH 302 (313)
Q Consensus 294 ~~~~nl~~~ 302 (313)
..++.-+++
T Consensus 286 N~~~a~~~~ 294 (297)
T PRK14168 286 NTLKSAKFH 294 (297)
T ss_pred HHHHHHHHH
Confidence 334333443
No 179
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.75 E-value=0.0002 Score=57.37 Aligned_cols=100 Identities=27% Similarity=0.441 Sum_probs=71.4
Q ss_pred CEEEEEc----CChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhc
Q 021388 145 KTVGIIG----LGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDA 220 (313)
Q Consensus 145 ~~igiiG----~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~ 220 (313)
|+|+||| -|..|..+.+.|+..|++|+..++......+...+.+++|.-...|++++++|. +.+..++ ++ +..
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v-~~-~~~ 77 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIV-DE-AAA 77 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHH-HH-HHH
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCH-HHHHHHH-HH-HHH
Confidence 5899999 789999999999999999999999887777777788898855889999999982 2333343 32 344
Q ss_pred cCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388 221 LGPKGVLINIGRGPHVDERELVSALVEGRLG 251 (313)
Q Consensus 221 mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ 251 (313)
+..+.+++..+ ..++++.+.+++..+.
T Consensus 78 ~g~~~v~~~~g----~~~~~~~~~a~~~gi~ 104 (116)
T PF13380_consen 78 LGVKAVWLQPG----AESEELIEAAREAGIR 104 (116)
T ss_dssp HT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred cCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence 46778888888 6778888999888877
No 180
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.74 E-value=7.1e-05 Score=65.09 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=59.1
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCccc----------c--c--cC---CCHHHHhhcCCEEEE
Q 021388 140 TKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNLK----------Y--K--YY---PSVVELASNCHILVV 201 (313)
Q Consensus 140 ~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~----------~--~--~~---~~l~e~~~~aDvV~~ 201 (313)
..+.++++.|+|. |.+|+.+++.+...|++|..++|+.++... . . .. .++.+.++++|+|+.
T Consensus 24 ~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 24 KDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence 4578899999995 999999999999999999999987542110 0 0 01 123456777888877
Q ss_pred ecCCChhhhcccCHHHHhccCCCcEEEEcCCCccc
Q 021388 202 ACPLTEETRHIINREVIDALGPKGVLINIGRGPHV 236 (313)
Q Consensus 202 ~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~v 236 (313)
+.|....+ .+ ..-...+++.+++|+.+...+
T Consensus 104 at~~g~~~--~~--~~~~~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 104 AGAAGVEL--LE--KLAWAPKPLAVAADVNAVPPV 134 (194)
T ss_pred CCCCCcee--ch--hhhcccCceeEEEEccCCCCC
Confidence 77754321 11 111123445666666655543
No 181
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.72 E-value=0.00012 Score=68.96 Aligned_cols=88 Identities=20% Similarity=0.355 Sum_probs=62.3
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC----------c--c-cc------ccCCCHHHHh-hcCCEEEEecC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP----------N--L-KY------KYYPSVVELA-SNCHILVVACP 204 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~----------~--~-~~------~~~~~l~e~~-~~aDvV~~~lp 204 (313)
++|+|||.|.||..+|..|...|.+|..|+|+++. . . +. ....++++.+ ..+|+|++++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 36999999999999999999999999999986531 0 0 11 1234566665 58999999999
Q ss_pred CChhhhcccCHHHHh-ccCCCcEEEEcCCCc
Q 021388 205 LTEETRHIINREVID-ALGPKGVLINIGRGP 234 (313)
Q Consensus 205 ~~~~t~~li~~~~l~-~mk~ga~lIn~~rg~ 234 (313)
.. ++..++ +++.+ .+++++.+|....|-
T Consensus 81 s~-~~~~~l-~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 81 TQ-QLRTIC-QQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred HH-HHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence 43 344443 44444 667777777776664
No 182
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.71 E-value=8.9e-05 Score=69.92 Aligned_cols=84 Identities=21% Similarity=0.353 Sum_probs=62.9
Q ss_pred CCEEEEEcCChHHHHHHHHHHh-CC-CCEEEecCCCCCcc---------c--cccCCCHHHHhhcCCEEEEecCCChhhh
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEA-FS-CPINYYSRTEKPNL---------K--YKYYPSVVELASNCHILVVACPLTEETR 210 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~-~G-~~V~~~~~~~~~~~---------~--~~~~~~l~e~~~~aDvV~~~lp~~~~t~ 210 (313)
-+++||||.|.+|+..++.+.. +. -+|.+|||+.++.. + .....+.++++++||+|++|+|.. .
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence 4689999999999997776653 22 46999999876421 1 223578999999999999999853 3
Q ss_pred cccCHHHHhccCCCcEEEEcCCC
Q 021388 211 HIINREVIDALGPKGVLINIGRG 233 (313)
Q Consensus 211 ~li~~~~l~~mk~ga~lIn~~rg 233 (313)
.++..+ .+|||+.+..+|..
T Consensus 205 P~~~~~---~l~~g~~v~~vGs~ 224 (325)
T TIGR02371 205 PVVKAD---WVSEGTHINAIGAD 224 (325)
T ss_pred cEecHH---HcCCCCEEEecCCC
Confidence 455544 45999999999853
No 183
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.71 E-value=0.00018 Score=66.65 Aligned_cols=80 Identities=15% Similarity=0.259 Sum_probs=64.1
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhC----CCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhccc
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAF----SCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHII 213 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~----G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li 213 (313)
+.++.||++.|||-+. +|+++|..|... ++.|..+.... .++.+..++||+|+.++.- .+++
T Consensus 152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------~~l~~~~~~ADIvIsAvGk----p~~i 218 (297)
T PRK14167 152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT---------DDLAAKTRRADIVVAAAGV----PELI 218 (297)
T ss_pred CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC---------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 4469999999999986 799999999865 78898775322 2688999999999998863 3467
Q ss_pred CHHHHhccCCCcEEEEcCCCc
Q 021388 214 NREVIDALGPKGVLINIGRGP 234 (313)
Q Consensus 214 ~~~~l~~mk~ga~lIn~~rg~ 234 (313)
..+. .|+|+++||+|--.
T Consensus 219 ~~~~---ik~gaiVIDvGin~ 236 (297)
T PRK14167 219 DGSM---LSEGATVIDVGINR 236 (297)
T ss_pred CHHH---cCCCCEEEEccccc
Confidence 6655 57999999999654
No 184
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=97.70 E-value=0.00039 Score=63.42 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=73.9
Q ss_pred HHHHHHhCC--CCEEEecCCCCCcc-----ccc--cCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEE
Q 021388 159 VAKRAEAFS--CPINYYSRTEKPNL-----KYK--YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLIN 229 (313)
Q Consensus 159 iA~~l~~~G--~~V~~~~~~~~~~~-----~~~--~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn 229 (313)
+|+.|+..| .+|++||+++.... +.. ...+ .+.++++|+|++|+|.. .+..++ +++...+++|++++|
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~D 77 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTD 77 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEE
Confidence 577888777 68999999876322 221 1223 57889999999999943 344444 667788999999999
Q ss_pred cCCCccccHHHHHHHHHhCCeeEE-EecCCCCCCCC----CCcccCCCceEEccCCC
Q 021388 230 IGRGPHVDERELVSALVEGRLGGA-GLDVFENEPHV----PEELFGLENVVLMPHVG 281 (313)
Q Consensus 230 ~~rg~~vd~~al~~al~~~~l~ga-~lDV~~~Ep~~----~~~L~~~pnv~lTPH~a 281 (313)
++.-..--.+++.+.+..+ .... +=-.|.+|--. ...|++--+++++|+-.
T Consensus 78 v~SvK~~~~~~~~~~~~~~-~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~ 133 (258)
T PF02153_consen 78 VGSVKAPIVEAMERLLPEG-VRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED 133 (258)
T ss_dssp --S-CHHHHHHHHHHHTSS-GEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred eCCCCHHHHHHHHHhcCcc-cceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence 9988766666666666622 2211 22345555321 12588888999999865
No 185
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.69 E-value=0.00052 Score=64.28 Aligned_cols=106 Identities=20% Similarity=0.239 Sum_probs=73.7
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc---cccc--------------cCCCHHHHhhcCCEEEEecCCCh
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN---LKYK--------------YYPSVVELASNCHILVVACPLTE 207 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~---~~~~--------------~~~~l~e~~~~aDvV~~~lp~~~ 207 (313)
++|+|||.|.||..+|..|...|++|.++.|+.... .+.. ...+. +....+|+|+++++...
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK~~~ 84 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLKTTA 84 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEecCCC
Confidence 689999999999999999999999999998865211 0100 01122 24578999999998543
Q ss_pred hhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEE
Q 021388 208 ETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAG 254 (313)
Q Consensus 208 ~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~ 254 (313)
+...+ +...+.+++++.++...-| +-.++.+.+.+...++.++.
T Consensus 85 -~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~ 128 (313)
T PRK06249 85 -NALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL 128 (313)
T ss_pred -hHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence 33332 4455567788888887666 44667777777777766543
No 186
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.68 E-value=0.00029 Score=73.23 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=79.4
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhc
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASN 195 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~ 195 (313)
++|+|||.|.||..||..+...|++|..||++++... + .....++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999999999999998865210 0 0112345 44789
Q ss_pred CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCC
Q 021388 196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVF 258 (313)
Q Consensus 196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~ 258 (313)
||+|+=++|...+.+.-+-+++-+.++++++|...+.+ +....|.+.+... -+.+++--|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p-~r~~g~Hff 452 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKRP-ENFCGMHFF 452 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCC-ccEEEEecC
Confidence 99999999988888877767777889999988443332 4456666666432 223455555
No 187
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.68 E-value=0.00018 Score=67.91 Aligned_cols=95 Identities=11% Similarity=0.088 Sum_probs=62.6
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHh
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVID 219 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~ 219 (313)
.+.|+++.|||.|.||+.+++.|...|. +|++.+|+..............+...++|+|+.+...|.....++..+.++
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~ 250 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLA 250 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHh
Confidence 5899999999999999999999999996 599999987531111100011144679999998743333334455566555
Q ss_pred ccCCCcEEEEcCCCccc
Q 021388 220 ALGPKGVLINIGRGPHV 236 (313)
Q Consensus 220 ~mk~ga~lIn~~rg~~v 236 (313)
..++ .++||.+=..=|
T Consensus 251 ~~~~-r~~iDLAvPRdI 266 (338)
T PRK00676 251 DIPD-RIVFDFNVPRTF 266 (338)
T ss_pred hccC-cEEEEecCCCCC
Confidence 4332 377776644333
No 188
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.65 E-value=0.00022 Score=67.74 Aligned_cols=87 Identities=21% Similarity=0.313 Sum_probs=64.1
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------------c--cc------ccCCCHHHHhhcCCEEEEecC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------------L--KY------KYYPSVVELASNCHILVVACP 204 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------------~--~~------~~~~~l~e~~~~aDvV~~~lp 204 (313)
++|+|||.|.+|..+|..|...| .|..|.++++.. . +. ....++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 68999999999999999999988 677777653210 0 11 123567788899999999999
Q ss_pred CChhhhcccCHHHHhccCCCcEEEEcCCCc
Q 021388 205 LTEETRHIINREVIDALGPKGVLINIGRGP 234 (313)
Q Consensus 205 ~~~~t~~li~~~~l~~mk~ga~lIn~~rg~ 234 (313)
. ..++.++ ++....++++..+|++..|=
T Consensus 87 s-~~~~~vl-~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 87 S-HGFRGVL-TELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred H-HHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence 3 3344444 55566778888899988864
No 189
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.64 E-value=0.00024 Score=62.40 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=68.2
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC---CCC---------ccc-------------------ccc--
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT---EKP---------NLK-------------------YKY-- 185 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~---~~~---------~~~-------------------~~~-- 185 (313)
..|..++|+|+|+|.+|..+|+.|...|. ++..+|++ ... ..+ ...
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 45899999999999999999999999999 58898876 210 000 000
Q ss_pred ----CCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388 186 ----YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 186 ----~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~r 232 (313)
..++.++++++|+|+-+ ..++.++..+.++....++...++...+-
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~ 146 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASGL 146 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEecc
Confidence 12345678889999888 57888998888888888877666664433
No 190
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=97.60 E-value=0.0007 Score=63.08 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=80.7
Q ss_pred CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------cc-------------ccCCCHHHHhh
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------KY-------------KYYPSVVELAS 194 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~~-------------~~~~~l~e~~~ 194 (313)
-+++||||.|.||+.+|..+...|+.|..+|++++... +. ....++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 37899999999999999999997799999999854210 00 0112222 678
Q ss_pred cCCEEEEecCCChhhhcccCHHHHhccCCCcEE-EEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCC
Q 021388 195 NCHILVVACPLTEETRHIINREVIDALGPKGVL-INIGRGPHVDERELVSALVEGRLGGAGLDVFENEP 262 (313)
Q Consensus 195 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~l-In~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep 262 (313)
+||+|+=++|-+.+.++-+-++.=...+|+++| -|+|+-+ -.++.+++ +.+-+..++=-|.+-|
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~---it~ia~~~-~rper~iG~HFfNP~~ 146 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLS---ITELAEAL-KRPERFIGLHFFNPVP 146 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCC---HHHHHHHh-CCchhEEEEeccCCCC
Confidence 999999999988888776667677778999998 5665544 45666676 3333345555554433
No 191
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.58 E-value=0.00038 Score=72.53 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=80.6
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhc
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASN 195 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~ 195 (313)
++|+|||.|.||..||..+...|++|..+|++++... + .....+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5799999999999999999999999999998765210 0 01123454 5789
Q ss_pred CCEEEEecCCChhhhcccCHHHHhccCCCcEEE-EcCCCccccHHHHHHHHHhCCeeEEEecCCC
Q 021388 196 CHILVVACPLTEETRHIINREVIDALGPKGVLI-NIGRGPHVDERELVSALVEGRLGGAGLDVFE 259 (313)
Q Consensus 196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lI-n~~rg~~vd~~al~~al~~~~l~ga~lDV~~ 259 (313)
||+|+=++|.+.+.+.-+-+++=+.++++++|. |+|. ++...|.+.+... -+..++.-|.
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs---l~i~~la~~~~~p-~r~ig~Hff~ 475 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA---LPIKDIAAVSSRP-EKVIGMHYFS 475 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHhhcCCc-cceEEEeccC
Confidence 999999999888888777677778899999885 4443 4556666766442 2334666663
No 192
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=97.55 E-value=0.00066 Score=70.41 Aligned_cols=111 Identities=14% Similarity=0.157 Sum_probs=77.9
Q ss_pred CEEEEEcCChHHHHHHHHHH-hCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhh
Q 021388 145 KTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELAS 194 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~-~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~ 194 (313)
++|+|||.|.||+.+|..+. ..|++|..||++++... + .....++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 57999999999999999987 58999999998764210 0 0112345 4578
Q ss_pred cCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCC
Q 021388 195 NCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFE 259 (313)
Q Consensus 195 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~ 259 (313)
+||+|+=++|...+.+.-+-+++-+.++++++|.....+ +....|.+.++.. -+.+++--|.
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~p-~r~~g~Hffn 445 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASRP-ENVIGLHYFS 445 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCCc-ccEEEEecCC
Confidence 999999999988888877767777788999888543332 3445566666432 2234555553
No 193
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.55 E-value=0.00085 Score=63.98 Aligned_cols=131 Identities=13% Similarity=0.202 Sum_probs=93.0
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------------cc-------------cccCCCHHHHhhcCCEE
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------------LK-------------YKYYPSVVELASNCHIL 199 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------------~~-------------~~~~~~l~e~~~~aDvV 199 (313)
++|.|+|.|-+|...+..+..+|++|+++|..+.+. .+ ..+..+.++.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 579999999999999999999999999999776421 11 12345788899999999
Q ss_pred EEecCCChhhhcccC--------HHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC-CCCCCCCCC----
Q 021388 200 VVACPLTEETRHIIN--------REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV-FENEPHVPE---- 266 (313)
Q Consensus 200 ~~~lp~~~~t~~li~--------~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV-~~~Ep~~~~---- 266 (313)
++++|.++...+-++ ++..+.++..+++|+=|+-.+=..+.+.+-+....-.. -++| +.+|=|-..
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~-~f~v~~NPEFLREG~Av~ 159 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGK-DFEVASNPEFLREGSAVY 159 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccC-CceEecChHHhcCcchhh
Confidence 999986554344333 45667787779999999999988888888777665332 2222 455544322
Q ss_pred cccCCCceEE
Q 021388 267 ELFGLENVVL 276 (313)
Q Consensus 267 ~L~~~pnv~l 276 (313)
..+.-+++++
T Consensus 160 D~~~PdRIVi 169 (414)
T COG1004 160 DFLYPDRIVI 169 (414)
T ss_pred hccCCCeEEE
Confidence 2334455554
No 194
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=97.52 E-value=0.00068 Score=70.44 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=74.1
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhhc
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELASN 195 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~~ 195 (313)
++|+|||.|.||..||..+...|++|..+|++++... + .....++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5799999999999999999999999999998765211 0 0112344 34789
Q ss_pred CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHH
Q 021388 196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALV 246 (313)
Q Consensus 196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~ 246 (313)
||+|+=++|...+.+.-+-+++=+.++++++|-..+.+ .+..+|.+.++
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~ 441 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALK 441 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence 99999999988888876667777889999998443332 45566666664
No 195
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.51 E-value=0.0013 Score=68.42 Aligned_cols=110 Identities=14% Similarity=0.135 Sum_probs=79.6
Q ss_pred CEEEEEcCChHHHHHHHHHH-hCCCCEEEecCCCCCcc----------------c-------------cccCCCHHHHhh
Q 021388 145 KTVGIIGLGRIGMAVAKRAE-AFSCPINYYSRTEKPNL----------------K-------------YKYYPSVVELAS 194 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~-~~G~~V~~~~~~~~~~~----------------~-------------~~~~~~l~e~~~ 194 (313)
++|+|||.|.||..+|..+. ..|++|..+|++++... + .....++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999988 88999999998764210 0 0112344 4578
Q ss_pred cCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCC
Q 021388 195 NCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVF 258 (313)
Q Consensus 195 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~ 258 (313)
+||+|+=++|.+.+.+.-+-+++=+.++|+++|...+.+ +....|.+.+... -+.+++--|
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~p-~r~ig~Hff 449 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAARP-EQVIGLHYF 449 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCcc-cceEEEecC
Confidence 999999999988888877767777889999998644333 4556666666432 223455555
No 196
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.51 E-value=0.0051 Score=55.89 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=91.8
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEe-cCCCC----------------------Cc--c-------ccccCC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY-SRTEK----------------------PN--L-------KYKYYP 187 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~-~~~~~----------------------~~--~-------~~~~~~ 187 (313)
.++.|+++.|-|+|++|+.+|+.|...|++|++. |.+.. .. . +... .
T Consensus 34 ~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~-~ 112 (254)
T cd05313 34 ETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKY-F 112 (254)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEE-e
Confidence 4689999999999999999999999999998844 42110 00 0 0011 1
Q ss_pred CHHH-HhhcCCEEEEecCCChhhhcccCHHHHhccC--CCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCC
Q 021388 188 SVVE-LASNCHILVVACPLTEETRHIINREVIDALG--PKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHV 264 (313)
Q Consensus 188 ~l~e-~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk--~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~ 264 (313)
+.++ +..+||+++-|. +.+.|+.+..+.++ +-.+++-.+.+++.+ +-.+.|.++.+. ..=|+.-+-=-.
T Consensus 113 ~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~-vvPD~laNaGGV 184 (254)
T cd05313 113 EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL-FAPGKAANAGGV 184 (254)
T ss_pred CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE-EECchhhcCCCe
Confidence 2223 335799887664 66789999888885 345677777777644 455788888776 344543221100
Q ss_pred -CC--cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 021388 265 -PE--ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHF 303 (313)
Q Consensus 265 -~~--~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~ 303 (313)
-+ ++.+. .-|..|.-++..+++.+.+.+...+.+
T Consensus 185 ivs~~E~~qn-----~~~~~w~~e~V~~~l~~~m~~~~~~v~ 221 (254)
T cd05313 185 AVSGLEMSQN-----SQRLSWTAEEVDAKLKDIMKNIHDACA 221 (254)
T ss_pred eeeHHHhhcc-----cccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 01 11111 123344456666777766666655544
No 197
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.51 E-value=0.0002 Score=66.99 Aligned_cols=84 Identities=13% Similarity=0.068 Sum_probs=64.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHh-CCC-CEEEecCCCCCcc---------cccc-CCCHHHHhhcCCEEEEecCCChhhh
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEA-FSC-PINYYSRTEKPNL---------KYKY-YPSVVELASNCHILVVACPLTEETR 210 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~-~G~-~V~~~~~~~~~~~---------~~~~-~~~l~e~~~~aDvV~~~lp~~~~t~ 210 (313)
..++++|||.|.+|+..++.+.. ++. +|.+|+|++++.. +... ..+.++++.++|+|+.++|.+.
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~--- 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT--- 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---
Confidence 46799999999999999999864 675 5999999875321 1111 3578889999999999998553
Q ss_pred cccCHHHHhccCCCcEEEEcCCC
Q 021388 211 HIINREVIDALGPKGVLINIGRG 233 (313)
Q Consensus 211 ~li~~~~l~~mk~ga~lIn~~rg 233 (313)
.++.. .+|||+.+..+|.-
T Consensus 201 Pl~~~----~~~~g~hi~~iGs~ 219 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGAF 219 (304)
T ss_pred ceeCc----cCCCCCEEEecCCC
Confidence 45543 36999999999854
No 198
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.47 E-value=0.0033 Score=56.26 Aligned_cols=109 Identities=19% Similarity=0.254 Sum_probs=71.7
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEe-cCCCC--Cccc------------------c--ccCCCHHHH-hhc
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY-SRTEK--PNLK------------------Y--KYYPSVVEL-ASN 195 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~-~~~~~--~~~~------------------~--~~~~~l~e~-~~~ 195 (313)
.++.|++++|.|+|++|+.+|+.|..+|++|++. |.... .+.| + ....+.+++ -.+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~ 106 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD 106 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence 3589999999999999999999999999999854 43110 0000 0 000112222 247
Q ss_pred CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388 196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV 257 (313)
Q Consensus 196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV 257 (313)
||+++-|.+ .+.++.+....++ -.+++-.+-+.+ . ....+.|+++.+. ++=|.
T Consensus 107 ~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~-~~PD~ 159 (227)
T cd01076 107 CDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVL-VVPDI 159 (227)
T ss_pred ccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCE-EEChH
Confidence 899887765 3467888888886 445566666665 4 5566888888887 34443
No 199
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.44 E-value=0.00037 Score=67.82 Aligned_cols=86 Identities=22% Similarity=0.344 Sum_probs=60.4
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcc------c-c--ccCCCHHHHhhcCCEEEEecCCChhhh
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNL------K-Y--KYYPSVVELASNCHILVVACPLTEETR 210 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~------~-~--~~~~~l~e~~~~aDvV~~~lp~~~~t~ 210 (313)
.+.|+++.|||.|.||+.+++.|...|. ++++++|+..... + . ....++.+.+.++|+|+.|++.. .
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 4789999999999999999999999997 5999999865321 1 1 11245567789999999998743 3
Q ss_pred cccCHHHHhccCCCcEEEEcC
Q 021388 211 HIINREVIDALGPKGVLINIG 231 (313)
Q Consensus 211 ~li~~~~l~~mk~ga~lIn~~ 231 (313)
.+|..+... .+..++||.+
T Consensus 255 ~vi~~~~~~--~~~~~~iDLa 273 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDIS 273 (414)
T ss_pred eeECHHHhC--CCCeEEEEeC
Confidence 345544432 1224555554
No 200
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.44 E-value=5.7e-05 Score=59.08 Aligned_cols=87 Identities=17% Similarity=0.205 Sum_probs=57.4
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC--CccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK--PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVI 218 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~--~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l 218 (313)
.++|+++.|||.|.+|..=++.|...|++|+++++... +..-......+++.+..+|+|+.+.+... +++...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~-----~n~~i~ 78 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSEGLIQLIRREFEEDLDGADLVFAATDDPE-----LNEAIY 78 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHHTSCEEEESS-GGGCTTESEEEE-SS-HH-----HHHHHH
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhhhHHHHHhhhHHHHHhhheEEEecCCCHH-----HHHHHH
Confidence 58999999999999999999999999999999998741 11000112234566788999887775322 345555
Q ss_pred hccCCCcEEEEcCC
Q 021388 219 DALGPKGVLINIGR 232 (313)
Q Consensus 219 ~~mk~ga~lIn~~r 232 (313)
...+.-.+++|++-
T Consensus 79 ~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 79 ADARARGILVNVVD 92 (103)
T ss_dssp HHHHHTTSEEEETT
T ss_pred HHHhhCCEEEEECC
Confidence 55565667777753
No 201
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.43 E-value=0.00098 Score=62.73 Aligned_cols=114 Identities=18% Similarity=0.217 Sum_probs=71.0
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCC-CCEEEecCCCCCccc-----------------cccCCCHHHHhhcCCEEEEec
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFS-CPINYYSRTEKPNLK-----------------YKYYPSVVELASNCHILVVAC 203 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~~-----------------~~~~~~l~e~~~~aDvV~~~l 203 (313)
+..++|+|||.|.+|..+|..+...| .++..+|++.+...+ .....+.+ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45679999999999999999998878 689999987643211 01123555 679999999998
Q ss_pred --CCChh-hh--------cccC--HHHHhccCCCcEEEEcCCCccccHHHHHHHHH--hCCeeEEE--ec
Q 021388 204 --PLTEE-TR--------HIIN--REVIDALGPKGVLINIGRGPHVDERELVSALV--EGRLGGAG--LD 256 (313)
Q Consensus 204 --p~~~~-t~--------~li~--~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~--~~~l~ga~--lD 256 (313)
|..+. ++ .++. .+.+....|.+++|+++...-+-...+.+.-. ..++.|.+ +|
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld 151 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD 151 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence 43331 11 1110 12333446888999986544333334444321 35566555 55
No 202
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.42 E-value=0.0007 Score=63.89 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=63.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHH-hCCC-CEEEecCCCCCcc----------cc--ccCCCHHHHhhcCCEEEEecCCChh
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAE-AFSC-PINYYSRTEKPNL----------KY--KYYPSVVELASNCHILVVACPLTEE 208 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~-~~G~-~V~~~~~~~~~~~----------~~--~~~~~l~e~~~~aDvV~~~lp~~~~ 208 (313)
..++++|||.|.+|+..++.+. ..+. +|.+|+|+.++.. +. ....++++.+++||+|++++|..
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~-- 205 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE-- 205 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence 3578999999999999999997 4775 5999999875321 11 22467889999999999999854
Q ss_pred hhcccCHHHHhccCCCcEEEEcCC
Q 021388 209 TRHIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 209 t~~li~~~~l~~mk~ga~lIn~~r 232 (313)
..++..+. +|+|+.+..++.
T Consensus 206 -~p~i~~~~---l~~g~~i~~vg~ 225 (326)
T TIGR02992 206 -TPILHAEW---LEPGQHVTAMGS 225 (326)
T ss_pred -CcEecHHH---cCCCcEEEeeCC
Confidence 34565544 689998887763
No 203
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.42 E-value=0.00044 Score=68.57 Aligned_cols=101 Identities=14% Similarity=0.165 Sum_probs=65.7
Q ss_pred ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcccc-----ccCCCHHHH--hhcCCEEEEecCCChhhhc
Q 021388 139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY-----KYYPSVVEL--ASNCHILVVACPLTEETRH 211 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~-----~~~~~l~e~--~~~aDvV~~~lp~~~~t~~ 211 (313)
+..+.+++++|+|.|.+|++++..+...|++|.+++|+.++.... ....+++++ +.++|+|++|+|....
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g~~--- 403 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPSVT--- 403 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCCCc---
Confidence 345789999999999999999999999999999999875432110 011122222 5689999999996532
Q ss_pred ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388 212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG 251 (313)
Q Consensus 212 li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ 251 (313)
+.. .+ . .+++|+.-.+.... +.++.++.++.
T Consensus 404 -~~~-~l---~--~~v~D~~Y~P~~T~--ll~~A~~~G~~ 434 (477)
T PRK09310 404 -IPK-AF---P--PCVVDINTLPKHSP--YTQYARSQGSS 434 (477)
T ss_pred -chh-HH---h--hhEEeccCCCCCCH--HHHHHHHCcCE
Confidence 211 12 1 26777766554322 55555555443
No 204
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.41 E-value=0.00034 Score=65.95 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=63.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHH-hCCC-CEEEecCCCCCcc----------cc--ccCCCHHHHhhcCCEEEEecCCChh
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAE-AFSC-PINYYSRTEKPNL----------KY--KYYPSVVELASNCHILVVACPLTEE 208 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~-~~G~-~V~~~~~~~~~~~----------~~--~~~~~l~e~~~~aDvV~~~lp~~~~ 208 (313)
..++++|||.|.+|+..+..+. ..+. +|.+|+|++++.. +. ..+.+++++++++|+|++++|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4578999999999999887764 4566 5889999875321 11 23567889999999999999855
Q ss_pred hhcccCHHHHhccCCCcEEEEcCCC
Q 021388 209 TRHIINREVIDALGPKGVLINIGRG 233 (313)
Q Consensus 209 t~~li~~~~l~~mk~ga~lIn~~rg 233 (313)
..++. ..+|+|+.++.+|.-
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGSF 223 (325)
T ss_pred -CcchH----HhcCCCcEEEecCCC
Confidence 33443 556999999888753
No 205
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.39 E-value=0.0017 Score=60.48 Aligned_cols=110 Identities=15% Similarity=0.231 Sum_probs=77.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCCEEEec--CCCCCccccccCCCHHHHhhcCCEEEEecCCChhhh---c------
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYS--RTEKPNLKYKYYPSVVELASNCHILVVACPLTEETR---H------ 211 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~--~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~---~------ 211 (313)
.|++++|||--.--..+++.|.+.|++|.++. .......++....+.+++++++|+|++-+|.+.+.. .
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~ 80 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK 80 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence 37899999999999999999999999988643 222234455556677889999999998888653321 1
Q ss_pred -ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCC
Q 021388 212 -IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFE 259 (313)
Q Consensus 212 -li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~ 259 (313)
-++.+.++.|++|..++ +|.+.. . +-+.+.+.++. .+|..+
T Consensus 81 ~~~~~~~l~~l~~~~~v~-~G~~~~---~-~~~~~~~~gi~--~~~~~~ 122 (296)
T PRK08306 81 LVLTEELLELTPEHCTIF-SGIANP---Y-LKELAKETNRK--LVELFE 122 (296)
T ss_pred CcchHHHHHhcCCCCEEE-EecCCH---H-HHHHHHHCCCe--EEEEec
Confidence 13578999999998544 444432 2 44667788887 445443
No 206
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.38 E-value=0.00065 Score=64.28 Aligned_cols=95 Identities=22% Similarity=0.282 Sum_probs=69.7
Q ss_pred cccccCCCEEEEEcC-ChHHHHHHHHHHh-CCC-CEEEecCCCCCccc------cccCCCHHHHhhcCCEEEEecCCChh
Q 021388 138 LTTKFTGKTVGIIGL-GRIGMAVAKRAEA-FSC-PINYYSRTEKPNLK------YKYYPSVVELASNCHILVVACPLTEE 208 (313)
Q Consensus 138 ~~~~l~g~~igiiG~-G~iG~~iA~~l~~-~G~-~V~~~~~~~~~~~~------~~~~~~l~e~~~~aDvV~~~lp~~~~ 208 (313)
++..+.|+++.|+|. |.||+.+++.|.. .|. +++.++|+...... .....++++.+.++|+|+.+....
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~-- 226 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP-- 226 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC--
Confidence 345699999999998 8999999999974 564 78889987543211 111235778899999988766432
Q ss_pred hhc-ccCHHHHhccCCCcEEEEcCCCccccH
Q 021388 209 TRH-IINREVIDALGPKGVLINIGRGPHVDE 238 (313)
Q Consensus 209 t~~-li~~~~l~~mk~ga~lIn~~rg~~vd~ 238 (313)
.. +++.+. ++++.++||.++..=||.
T Consensus 227 -~~~~I~~~~---l~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 227 -KGVEIDPET---LKKPCLMIDGGYPKNLDT 253 (340)
T ss_pred -cCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence 23 366654 479999999999887775
No 207
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.38 E-value=0.00049 Score=64.89 Aligned_cols=83 Identities=20% Similarity=0.232 Sum_probs=59.6
Q ss_pred EEEEcCChHHHHHHHHHHh-CCCCEEEe-cCCCCCc------cc------------------cccCCCHHHHhhcCCEEE
Q 021388 147 VGIIGLGRIGMAVAKRAEA-FSCPINYY-SRTEKPN------LK------------------YKYYPSVVELASNCHILV 200 (313)
Q Consensus 147 igiiG~G~iG~~iA~~l~~-~G~~V~~~-~~~~~~~------~~------------------~~~~~~l~e~~~~aDvV~ 200 (313)
|||+|+|.||+.+++.+.. -+++|.+. |..++.. .+ .....++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999999764 46777654 4333210 00 111346889999999999
Q ss_pred EecCCChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388 201 VACPLTEETRHIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 201 ~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~r 232 (313)
.|.| .+.+..+.+.+..|+.+++|+-.--
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p~ 109 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGEK 109 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCCC
Confidence 8875 4556778899999999998887543
No 208
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.38 E-value=0.00074 Score=63.16 Aligned_cols=111 Identities=17% Similarity=0.206 Sum_probs=71.4
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc-----------------cccCCCHHHHhhcCCEEEEecCCC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK-----------------YKYYPSVVELASNCHILVVACPLT 206 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~-----------------~~~~~~l~e~~~~aDvV~~~lp~~ 206 (313)
++|+|||.|.||..+|..+...|. +|..+|...+...+ .....+.++ +++||+|+++.+..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 589999999999999999988776 89999985542110 011245666 78999999998732
Q ss_pred hh---h--------hcccC--HHHHhccCCCcEEEEcCCCccccHHHHHHH--HHhCCeeEEE--ec
Q 021388 207 EE---T--------RHIIN--REVIDALGPKGVLINIGRGPHVDERELVSA--LVEGRLGGAG--LD 256 (313)
Q Consensus 207 ~~---t--------~~li~--~~~l~~mk~ga~lIn~~rg~~vd~~al~~a--l~~~~l~ga~--lD 256 (313)
.. + ..++. .+.+....+++++|+++...=+-...+.+. +...++.|.+ ||
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 21 1 11111 112333457899999877554444455555 4455666664 66
No 209
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.37 E-value=0.00058 Score=63.20 Aligned_cols=90 Identities=17% Similarity=0.106 Sum_probs=60.6
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcccc-------------ccCCCHHHHhhcCCEEEEecCCCh
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLKY-------------KYYPSVVELASNCHILVVACPLTE 207 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~~-------------~~~~~l~e~~~~aDvV~~~lp~~~ 207 (313)
+.++++.|+|.|.+|++++..|...|+ +|.++||+..+.... ....++.+.++++|+|+.++|..-
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm 204 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGM 204 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCC
Confidence 567899999999999999999999998 699999986532210 012344556788999999988542
Q ss_pred hh--hcccCHHHHhccCCCcEEEEcCCCc
Q 021388 208 ET--RHIINREVIDALGPKGVLINIGRGP 234 (313)
Q Consensus 208 ~t--~~li~~~~l~~mk~ga~lIn~~rg~ 234 (313)
.. ...++. ..++++.+++|+.=.+
T Consensus 205 ~~~~~~~~~~---~~l~~~~~v~DivY~P 230 (284)
T PRK12549 205 AKHPGLPLPA---ELLRPGLWVADIVYFP 230 (284)
T ss_pred CCCCCCCCCH---HHcCCCcEEEEeeeCC
Confidence 11 011222 2355666666665443
No 210
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.36 E-value=0.00038 Score=61.22 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=36.7
Q ss_pred ccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388 137 KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177 (313)
Q Consensus 137 ~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~ 177 (313)
|...++.|+++.|||.|.+|...++.|...|++|.++++..
T Consensus 3 Pl~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 3 PLMIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 34567999999999999999999999999999999998754
No 211
>PLN02477 glutamate dehydrogenase
Probab=97.35 E-value=0.01 Score=57.67 Aligned_cols=146 Identities=16% Similarity=0.169 Sum_probs=90.4
Q ss_pred ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEE-EecCCCC--Cccc------------------cc--cCCCHHH-Hhh
Q 021388 139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPIN-YYSRTEK--PNLK------------------YK--YYPSVVE-LAS 194 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~-~~~~~~~--~~~~------------------~~--~~~~l~e-~~~ 194 (313)
+.++.|++|+|.|+|++|+.+|+.|...|++|+ +.|.+.. .+.| +. ...+.++ +..
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~ 280 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE 280 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence 346899999999999999999999999999988 4454311 0000 00 0012222 245
Q ss_pred cCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCce
Q 021388 195 NCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENV 274 (313)
Q Consensus 195 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv 274 (313)
+||+++-|. ..+.|+++....++ -.+++-.+.+.+ .. +-.+.|+++.+. ++=|+.-+ .-.|
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~-ea~~~L~~rGI~-~~PD~~aN----------aGGV 341 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DP-EADEILRKKGVV-VLPDIYAN----------SGGV 341 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CH-HHHHHHHHCCcE-EEChHHhC----------CCCe
Confidence 799887654 45678888888874 567778888887 43 345888888886 34444322 2222
Q ss_pred EEc--------cCCCCCcHHHHHHHHHHHHHHHHHHH
Q 021388 275 VLM--------PHVGSGTVETRKTMADLVLGNLEAHF 303 (313)
Q Consensus 275 ~lT--------PH~a~~t~~~~~~~~~~~~~nl~~~~ 303 (313)
+.+ .|.-|..++..+++.+.+.+.+.+.+
T Consensus 342 ivs~~E~~qn~~~~~w~~~~v~~~l~~~m~~~~~~v~ 378 (410)
T PLN02477 342 TVSYFEWVQNIQGFMWEEEKVNRELDRYMTDAFKALK 378 (410)
T ss_pred eeeHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 221 12334445556666656666665554
No 212
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.34 E-value=0.00051 Score=66.31 Aligned_cols=90 Identities=20% Similarity=0.281 Sum_probs=63.9
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcc------c--cccCCCHHHHhhcCCEEEEecCCChhhhc
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNL------K--YKYYPSVVELASNCHILVVACPLTEETRH 211 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~------~--~~~~~~l~e~~~~aDvV~~~lp~~~~t~~ 211 (313)
+|.++++.|||.|.||.-+|+.|...|. +|++.+|+..+.. + +....++.+.+.++|+|+.++.. ...
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa---~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSA---PHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCC---Ccc
Confidence 4899999999999999999999999996 6889999876432 2 12235667789999999998753 234
Q ss_pred ccCHHHHhcc-C--CCcEEEEcCCC
Q 021388 212 IINREVIDAL-G--PKGVLINIGRG 233 (313)
Q Consensus 212 li~~~~l~~m-k--~ga~lIn~~rg 233 (313)
++..+.+... + +.-++||.+=.
T Consensus 252 ii~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEecCC
Confidence 5555444332 1 11466776533
No 213
>PRK06046 alanine dehydrogenase; Validated
Probab=97.33 E-value=0.00063 Score=64.18 Aligned_cols=82 Identities=24% Similarity=0.369 Sum_probs=61.0
Q ss_pred CCEEEEEcCChHHHHHHHHHHh-CCC-CEEEecCCCCCcc----------c--cccCCCHHHHhhcCCEEEEecCCChhh
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEA-FSC-PINYYSRTEKPNL----------K--YKYYPSVVELASNCHILVVACPLTEET 209 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~-~G~-~V~~~~~~~~~~~----------~--~~~~~~l~e~~~~aDvV~~~lp~~~~t 209 (313)
-+++||||.|.+|+..++.+.. .+. +|.+|||+++... + ...+.+++++++ +|+|++++|..
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 3689999999999999998873 455 4778999875311 1 123567889887 99999999854
Q ss_pred hcccCHHHHhccCCCcEEEEcCC
Q 021388 210 RHIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 210 ~~li~~~~l~~mk~ga~lIn~~r 232 (313)
.-++..+. +|+|+.+..+|.
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred CcEecHHH---cCCCCEEEecCC
Confidence 35665544 589999888873
No 214
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.32 E-value=0.0018 Score=52.30 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=58.2
Q ss_pred EEEEEcC-ChHHHHHHHHHHh-CCCCE-EEecCCCCC-------------ccccccCCCHHHHhhcCCEEEEecCCChhh
Q 021388 146 TVGIIGL-GRIGMAVAKRAEA-FSCPI-NYYSRTEKP-------------NLKYKYYPSVVELASNCHILVVACPLTEET 209 (313)
Q Consensus 146 ~igiiG~-G~iG~~iA~~l~~-~G~~V-~~~~~~~~~-------------~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t 209 (313)
+|+|+|+ |+||+.+++.+.. -|+++ .++++.... ..+.....++++++.++|+++-.. ..+.+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~ 80 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDAV 80 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHHh
Confidence 7999999 9999999999987 77885 567776621 112334578999999999988766 22233
Q ss_pred hcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHh
Q 021388 210 RHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE 247 (313)
Q Consensus 210 ~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~ 247 (313)
...+ +.. ++.|.-+|-..+|---++.+.++.+.+
T Consensus 81 ~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 81 YDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp HHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred HHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 3222 222 334666666666654333344444433
No 215
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.31 E-value=0.00079 Score=58.95 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=47.3
Q ss_pred CEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCC
Q 021388 145 KTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGP 223 (313)
Q Consensus 145 ~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ 223 (313)
++++|||- |.||+-++..++..|+.|. +++||+|++|+|-. .+.. .++.+.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~---------------------~~~~DlVilavPv~-~~~~-----~i~~~~- 52 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY---------------------IKKADHAFLSVPID-AALN-----YIESYD- 52 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE---------------------ECCCCEEEEeCCHH-HHHH-----HHHHhC-
Confidence 37999988 9999999999999999985 36899999999943 2232 333333
Q ss_pred CcEEEEcCCCcc
Q 021388 224 KGVLINIGRGPH 235 (313)
Q Consensus 224 ga~lIn~~rg~~ 235 (313)
.+++|++.-+-
T Consensus 53 -~~v~Dv~SvK~ 63 (197)
T PRK06444 53 -NNFVEISSVKW 63 (197)
T ss_pred -CeEEeccccCH
Confidence 37899987553
No 216
>PRK08291 ectoine utilization protein EutC; Validated
Probab=97.31 E-value=0.00068 Score=64.07 Aligned_cols=83 Identities=17% Similarity=0.210 Sum_probs=60.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHh-CCC-CEEEecCCCCCcc----------cc--ccCCCHHHHhhcCCEEEEecCCChh
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEA-FSC-PINYYSRTEKPNL----------KY--KYYPSVVELASNCHILVVACPLTEE 208 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~-~G~-~V~~~~~~~~~~~----------~~--~~~~~l~e~~~~aDvV~~~lp~~~~ 208 (313)
..++++|||.|.+|+..+..+.. .+. +|.+|+|+.++.. +. ....++++++.++|+|++++|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 34789999999999998888874 565 6999999865321 11 22467889999999999998854
Q ss_pred hhcccCHHHHhccCCCcEEEEcC
Q 021388 209 TRHIINREVIDALGPKGVLINIG 231 (313)
Q Consensus 209 t~~li~~~~l~~mk~ga~lIn~~ 231 (313)
..++..+. +++|+.+..++
T Consensus 209 -~p~i~~~~---l~~g~~v~~vg 227 (330)
T PRK08291 209 -EPILKAEW---LHPGLHVTAMG 227 (330)
T ss_pred -CcEecHHH---cCCCceEEeeC
Confidence 34555543 57887766643
No 217
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.29 E-value=0.00073 Score=63.68 Aligned_cols=84 Identities=19% Similarity=0.259 Sum_probs=58.2
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc------CCCHHHHhhcCCEEEEecCCChhhhc
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY------YPSVVELASNCHILVVACPLTEETRH 211 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~------~~~l~e~~~~aDvV~~~lp~~~~t~~ 211 (313)
.|++|+|+|+|..|....+.++++|++|+++|+++++.. ++.. ....+++-+.+|+++.++| . .+-
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-~~~- 242 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-ATL- 242 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h-hhH-
Confidence 589999999999999999999999999999999987532 2211 1112333334888877777 3 222
Q ss_pred ccCHHHHhccCCCcEEEEcCC
Q 021388 212 IINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 212 li~~~~l~~mk~ga~lIn~~r 232 (313)
...+..|+++..++-+|-
T Consensus 243 ---~~~l~~l~~~G~~v~vG~ 260 (339)
T COG1064 243 ---EPSLKALRRGGTLVLVGL 260 (339)
T ss_pred ---HHHHHHHhcCCEEEEECC
Confidence 445666777766666543
No 218
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.28 E-value=0.02 Score=56.13 Aligned_cols=152 Identities=13% Similarity=0.081 Sum_probs=88.0
Q ss_pred ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC---cccc----------------------c-----cCCC
Q 021388 139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP---NLKY----------------------K-----YYPS 188 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~---~~~~----------------------~-----~~~~ 188 (313)
+.+|.|++|.|.|+|++|...|+.|..+|++|++.+.+... +.|. . ...+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 34699999999999999999999999999999874331110 0000 0 0012
Q ss_pred HHHH-hhcCCEEEEecCCChhhhcccCHHHHhccCC-CcE-EEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCC-
Q 021388 189 VVEL-ASNCHILVVACPLTEETRHIINREVIDALGP-KGV-LINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHV- 264 (313)
Q Consensus 189 l~e~-~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~-ga~-lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~- 264 (313)
.+++ -..||+++-|. +.+.|+.+....++. |.. ++-.+.+ ++..++. +.|.++.+. .+=|+.-+-=-.
T Consensus 303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI~-~~PD~~aNAGGVi 374 (444)
T PRK14031 303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKIL-YAPGKAANAGGVS 374 (444)
T ss_pred CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCcE-EeChhhccCCCee
Confidence 2232 24688876544 567899998888865 444 4444555 6776665 455555554 244443111100
Q ss_pred CC--cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 021388 265 PE--ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHF 303 (313)
Q Consensus 265 ~~--~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~ 303 (313)
-+ ++.+ | .-+..|..++..+++.+.+.+...+.+
T Consensus 375 vs~~E~~q--n---~~~~~W~~eeV~~~L~~~m~~~~~~v~ 410 (444)
T PRK14031 375 VSGLEMTQ--N---SIKLSWSSEEVDEKLKSIMKNIHEACV 410 (444)
T ss_pred eehhhhhc--c---ccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00 1111 1 123455556666776666666555544
No 219
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.28 E-value=0.0008 Score=64.60 Aligned_cols=99 Identities=12% Similarity=0.165 Sum_probs=64.6
Q ss_pred CEEEEEcCChHHHHHHHHHHhCC-CCEEEecCCCCCccc---------------cccCCCHHHHhhcCCEEEEecCCChh
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFS-CPINYYSRTEKPNLK---------------YKYYPSVVELASNCHILVVACPLTEE 208 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~~---------------~~~~~~l~e~~~~aDvV~~~lp~~~~ 208 (313)
++|.|||.|.+|+.+|..|...| .+|++.||+.++... +.....+.+++++.|+|+.++|..-.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD 81 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence 68999999999999999999888 899999998653211 11123567888999999999984422
Q ss_pred hhcccCHHHH-hccCCCcEEEEcCCCccccHHHHHHHHHhCCe
Q 021388 209 TRHIINREVI-DALGPKGVLINIGRGPHVDERELVSALVEGRL 250 (313)
Q Consensus 209 t~~li~~~~l-~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l 250 (313)
...+ +.++-|.-.+|++-...-- -++.+..++.++
T Consensus 82 ------~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agi 117 (389)
T COG1748 82 ------LTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGI 117 (389)
T ss_pred ------HHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcCe
Confidence 2222 3345566666665444332 334444444433
No 220
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.27 E-value=0.00075 Score=63.36 Aligned_cols=102 Identities=12% Similarity=0.110 Sum_probs=67.5
Q ss_pred CEEEEEcCChHHHHHHHHHHhC-CCCEE-EecCCC-CCc---cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAF-SCPIN-YYSRTE-KPN---LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVI 218 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~-G~~V~-~~~~~~-~~~---~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l 218 (313)
.+|||||+|+||+.+++.+... ++++. +++++. ... .+.....+.++++.+.|+|++|+|...+ -....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHHH
Confidence 5899999999999999999765 78876 578875 211 1222234677778899999999985433 14445
Q ss_pred hccCCCcEEEEcCCCc--ccc-HHHHHHHHHh-CCee
Q 021388 219 DALGPKGVLINIGRGP--HVD-ERELVSALVE-GRLG 251 (313)
Q Consensus 219 ~~mk~ga~lIn~~rg~--~vd-~~al~~al~~-~~l~ 251 (313)
..|+.|.-+|+..--. +-+ .+.+-++.++ |++.
T Consensus 79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs 115 (324)
T TIGR01921 79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS 115 (324)
T ss_pred HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 5577787788875321 112 3445555554 5655
No 221
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.26 E-value=0.0014 Score=59.72 Aligned_cols=100 Identities=21% Similarity=0.235 Sum_probs=66.6
Q ss_pred CEEEEEcCChHHHHHHHHHHhC---CCCE-EEecCCCCCcc----ccccCCCHHHH-hhcCCEEEEecCCChhhhcccCH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAF---SCPI-NYYSRTEKPNL----KYKYYPSVVEL-ASNCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~---G~~V-~~~~~~~~~~~----~~~~~~~l~e~-~~~aDvV~~~lp~~~~t~~li~~ 215 (313)
++|||||+|.||+.+++.+..- ++++ .++++..+... ....+.+++++ ..+.|+|+=|.. ++. +-+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~--~~a---v~e 77 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAG--QQA---IAE 77 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCC--HHH---HHH
Confidence 5899999999999999998753 2554 45666643211 13346789996 688999988876 221 112
Q ss_pred HHHhccCCCcEEEEcCCCcccc---HHHHHHHHHhCC
Q 021388 216 EVIDALGPKGVLINIGRGPHVD---ERELVSALVEGR 249 (313)
Q Consensus 216 ~~l~~mk~ga~lIn~~rg~~vd---~~al~~al~~~~ 249 (313)
--.+.|+.|.-++=.|-|.+.| .+.|.++.++++
T Consensus 78 ~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g 114 (267)
T PRK13301 78 HAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGG 114 (267)
T ss_pred HHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCC
Confidence 2233456677788888888887 455666655543
No 222
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.26 E-value=0.00085 Score=62.98 Aligned_cols=87 Identities=23% Similarity=0.250 Sum_probs=54.2
Q ss_pred CEEEEEcCChHHHHHHHHHH-hCCC-CEEEecCCCCCcc---------c--cccCCCHHHHhhcCCEEEEecCCChhhhc
Q 021388 145 KTVGIIGLGRIGMAVAKRAE-AFSC-PINYYSRTEKPNL---------K--YKYYPSVVELASNCHILVVACPLTEETRH 211 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~-~~G~-~V~~~~~~~~~~~---------~--~~~~~~l~e~~~~aDvV~~~lp~~~~t~~ 211 (313)
+++||||.|..|+.-++.+. -++. +|.+|+|+++... + ...+.+.++++++||+|+.++|.+..+ -
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 58999999999999888876 4666 5999999875321 1 223578999999999999998865432 5
Q ss_pred ccCHHHHhccCCCcEEEEcCCCcc
Q 021388 212 IINREVIDALGPKGVLINIGRGPH 235 (313)
Q Consensus 212 li~~~~l~~mk~ga~lIn~~rg~~ 235 (313)
++..+ .++||+.++.+|....
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~~~ 228 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSYTP 228 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-SST
T ss_pred cccHH---HcCCCcEEEEecCCCC
Confidence 66554 5789999999997543
No 223
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.25 E-value=0.0011 Score=58.63 Aligned_cols=92 Identities=24% Similarity=0.272 Sum_probs=64.9
Q ss_pred CEEEEEcCChHHHHHHHHHHhC--CCC-EEEecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAF--SCP-INYYSRTEKPNL------KYKYYPSVVELASNCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~--G~~-V~~~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~ 215 (313)
.+||+||+|.||+.+.+.++.- +++ +.+||++.++.. +.....+++|++++.|+++=|.. .+..+ +
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~----e 75 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVR----E 75 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHH----H
Confidence 4799999999999999999843 454 789999876433 12234679999999999987764 22222 2
Q ss_pred HHHhccCCCcEEEEcCCCccccHHHH
Q 021388 216 EVIDALGPKGVLINIGRGPHVDEREL 241 (313)
Q Consensus 216 ~~l~~mk~ga~lIn~~rg~~vd~~al 241 (313)
-..+.|+.|-=+|=+|-|.+.|+.-+
T Consensus 76 ~~~~~L~~g~d~iV~SVGALad~~l~ 101 (255)
T COG1712 76 YVPKILKAGIDVIVMSVGALADEGLR 101 (255)
T ss_pred HhHHHHhcCCCEEEEechhccChHHH
Confidence 23445667766777778888876543
No 224
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.25 E-value=0.00098 Score=61.05 Aligned_cols=102 Identities=23% Similarity=0.211 Sum_probs=64.5
Q ss_pred CEEEEEcCChHHHHHHHHHHhC-CCCEE-EecCCCCCc-----c--ccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAF-SCPIN-YYSRTEKPN-----L--KYKYYPSVVELASNCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~-G~~V~-~~~~~~~~~-----~--~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~ 215 (313)
.+|||||+|.||+.+++.+... ++++. ++++..... . +.....+++++..+.|+|+.|.|.... . +
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~----e 76 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-K----E 76 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-H----H
Confidence 4899999999999999999865 56643 344332211 1 223456788875569999999984322 1 2
Q ss_pred HHHhccCCCcEEEEcCCCccccH---HHHHHHHHhCCee
Q 021388 216 EVIDALGPKGVLINIGRGPHVDE---RELVSALVEGRLG 251 (313)
Q Consensus 216 ~~l~~mk~ga~lIn~~rg~~vd~---~al~~al~~~~l~ 251 (313)
-....++.|.-++-.+-+.+.|. +.|.++.++++..
T Consensus 77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~ 115 (265)
T PRK13303 77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR 115 (265)
T ss_pred HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence 23344556666665666655554 4567777666554
No 225
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.24 E-value=0.0054 Score=54.54 Aligned_cols=104 Identities=19% Similarity=0.195 Sum_probs=69.4
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCCCEE-EecCCC----------CC-----cc-ccccC-----CCHHHH-hhcC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPIN-YYSRTE----------KP-----NL-KYKYY-----PSVVEL-ASNC 196 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~-~~~~~~----------~~-----~~-~~~~~-----~~l~e~-~~~a 196 (313)
.++.|+++.|.|+|++|+.+|+.|...|.+|. +.|.+. +. .. ..... .+-+++ -.+|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 35899999999999999999999999999755 456554 10 00 00001 011232 2479
Q ss_pred CEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388 197 HILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLG 251 (313)
Q Consensus 197 DvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ 251 (313)
|+++-|.+. ++++.+....++ -.+++-.+.+++.+ .-.+.|++..+.
T Consensus 99 DVlipaA~~-----~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~ 145 (217)
T cd05211 99 DIFAPCALG-----NVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV 145 (217)
T ss_pred cEEeecccc-----CccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence 999887763 367888888886 45566666777655 456677777665
No 226
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.21 E-value=0.0014 Score=61.80 Aligned_cols=82 Identities=27% Similarity=0.294 Sum_probs=65.6
Q ss_pred CEEEEEcCChHHHHHHHHHH-hCCC-CEEEecCCCCCcc----------c--cccCCCHHHHhhcCCEEEEecCCChhhh
Q 021388 145 KTVGIIGLGRIGMAVAKRAE-AFSC-PINYYSRTEKPNL----------K--YKYYPSVVELASNCHILVVACPLTEETR 210 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~-~~G~-~V~~~~~~~~~~~----------~--~~~~~~l~e~~~~aDvV~~~lp~~~~t~ 210 (313)
+++||||.|..++..++.++ -++. +|.+|+|+++... + .....+.+++++.||+|+.++|.++
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~--- 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE--- 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---
Confidence 58999999999999999887 4566 5999999886422 1 2346789999999999999998665
Q ss_pred cccCHHHHhccCCCcEEEEcCC
Q 021388 211 HIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 211 ~li~~~~l~~mk~ga~lIn~~r 232 (313)
.++..+. +|||+.+..+|.
T Consensus 208 Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred CeecHhh---cCCCcEEEecCC
Confidence 5676655 569999999994
No 227
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.18 E-value=0.00099 Score=53.37 Aligned_cols=85 Identities=14% Similarity=0.193 Sum_probs=53.8
Q ss_pred EEEEEc-CChHHHHHHHHHHhC-CCCEEEe-cCCCCC--ccc-----cc-c-CCCH--HHH-hhcCCEEEEecCCChhhh
Q 021388 146 TVGIIG-LGRIGMAVAKRAEAF-SCPINYY-SRTEKP--NLK-----YK-Y-YPSV--VEL-ASNCHILVVACPLTEETR 210 (313)
Q Consensus 146 ~igiiG-~G~iG~~iA~~l~~~-G~~V~~~-~~~~~~--~~~-----~~-~-~~~l--~e~-~~~aDvV~~~lp~~~~t~ 210 (313)
++||+| .|.+|+.+++.+... ++++.+. +++... ... .. . .... +++ ..++|+|++|+|......
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 489999 599999999999874 7887655 433211 110 00 0 0111 111 258999999999664433
Q ss_pred cccCHHHHhccCCCcEEEEcCC
Q 021388 211 HIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 211 ~li~~~~l~~mk~ga~lIn~~r 232 (313)
.+ ......+++|.++|+++.
T Consensus 81 -~~-~~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 81 -IA-PLLPKAAEAGVKVIDLSS 100 (122)
T ss_pred -HH-HHHHhhhcCCCEEEECCc
Confidence 22 133556789999999983
No 228
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.17 E-value=0.0016 Score=61.10 Aligned_cols=83 Identities=17% Similarity=0.313 Sum_probs=63.1
Q ss_pred CCEEEEEcCChHHHHHHHHHHh-CCC-CEEEecCCCCCcc---------cc--ccCCCHHHHhhcCCEEEEecCCChhhh
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEA-FSC-PINYYSRTEKPNL---------KY--KYYPSVVELASNCHILVVACPLTEETR 210 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~-~G~-~V~~~~~~~~~~~---------~~--~~~~~l~e~~~~aDvV~~~lp~~~~t~ 210 (313)
-++++|||.|..++..++.+.. +.. +|.+|+|++++.. +. ....+.++++++||+|+.+++.+ .
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---E 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---C
Confidence 4699999999999998887764 344 5999999876422 11 22467899999999999998744 4
Q ss_pred cccCHHHHhccCCCcEEEEcCC
Q 021388 211 HIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 211 ~li~~~~l~~mk~ga~lIn~~r 232 (313)
-++..+ .+|||+.++.+|.
T Consensus 205 P~~~~~---~l~~G~hi~~iGs 223 (315)
T PRK06823 205 PLLQAE---DIQPGTHITAVGA 223 (315)
T ss_pred ceeCHH---HcCCCcEEEecCC
Confidence 566555 4689999999983
No 229
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.12 E-value=0.0011 Score=63.97 Aligned_cols=87 Identities=21% Similarity=0.236 Sum_probs=64.6
Q ss_pred CCEEEEEcCChHHHHHHHHHHh-CC-C-CEEEecCCCCCcc-----------c---cccCCCHHHHhhcCCEEEEecCCC
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEA-FS-C-PINYYSRTEKPNL-----------K---YKYYPSVVELASNCHILVVACPLT 206 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~-~G-~-~V~~~~~~~~~~~-----------~---~~~~~~l~e~~~~aDvV~~~lp~~ 206 (313)
-+++||||.|..++..++.+.. +. . +|.+|+|++++.. + +..+.+.++++++||+|+.+++.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 3689999999999999988875 42 4 6999999875311 1 223578999999999999999754
Q ss_pred h---hhhcccCHHHHhccCCCcEEEEcCCC
Q 021388 207 E---ETRHIINREVIDALGPKGVLINIGRG 233 (313)
Q Consensus 207 ~---~t~~li~~~~l~~mk~ga~lIn~~rg 233 (313)
. .+.-++..+ .+|||+.++.++.-
T Consensus 235 ~~~~s~~Pv~~~~---~lkpG~hv~~ig~~ 261 (379)
T PRK06199 235 TGDPSTYPYVKRE---WVKPGAFLLMPAAC 261 (379)
T ss_pred CCCCCcCcEecHH---HcCCCcEEecCCcc
Confidence 3 334566554 45799988877653
No 230
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.09 E-value=0.019 Score=56.14 Aligned_cols=151 Identities=16% Similarity=0.183 Sum_probs=92.7
Q ss_pred ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEE--------ecCCCCCcc------------------------ccccC
Q 021388 139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINY--------YSRTEKPNL------------------------KYKYY 186 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~--------~~~~~~~~~------------------------~~~~~ 186 (313)
+.++.|++|.|=|+|++|+..|+.|..+|++|++ ||+..-... +....
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 3468999999999999999999999999999998 563321100 11111
Q ss_pred CCHHHH-hhcCCEEEEecCCChhhhcccCHHHHhccC--CCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCC
Q 021388 187 PSVVEL-ASNCHILVVACPLTEETRHIINREVIDALG--PKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPH 263 (313)
Q Consensus 187 ~~l~e~-~~~aDvV~~~lp~~~~t~~li~~~~l~~mk--~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~ 263 (313)
+-+++ ...||+++-|. +.+.|+.+....+. .-.+++-.+.+ ++..++- +.|+++.+. ++=|+.-+-=-
T Consensus 303 -~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~-~vPD~~aNAGG 373 (445)
T PRK14030 303 -AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL-FAPGKAVNAGG 373 (445)
T ss_pred -CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE-EeCcceecCCC
Confidence 12232 34688876554 67789888888883 24556666677 5666544 777777776 34454322110
Q ss_pred C-CC--cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 021388 264 V-PE--ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHF 303 (313)
Q Consensus 264 ~-~~--~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~ 303 (313)
. -+ ++.+ | .-|..|..++..+++.+.+.+.+.+.+
T Consensus 374 Vivs~~E~~q--n---~~~~~w~~eeV~~~L~~~m~~~~~~v~ 411 (445)
T PRK14030 374 VATSGLEMSQ--N---AMHLSWSAEEVDEKLHQIMSGIHEQCV 411 (445)
T ss_pred eeeehhhhhc--c---ccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 0 01 1111 1 135566667777777777666666554
No 231
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.08 E-value=0.0013 Score=60.05 Aligned_cols=109 Identities=19% Similarity=0.253 Sum_probs=70.8
Q ss_pred EEEEcC-ChHHHHHHHHHHhCC----CCEEEecCCCCCccc----------------cccCCCHHHHhhcCCEEEEecCC
Q 021388 147 VGIIGL-GRIGMAVAKRAEAFS----CPINYYSRTEKPNLK----------------YKYYPSVVELASNCHILVVACPL 205 (313)
Q Consensus 147 igiiG~-G~iG~~iA~~l~~~G----~~V~~~~~~~~~~~~----------------~~~~~~l~e~~~~aDvV~~~lp~ 205 (313)
|+|||. |.+|..+|..+...| .++..+|..++...+ .....++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999998777 689999987653211 11134567889999999996521
Q ss_pred --Ch---------hhhcccC--HHHHhccCCCcEEEEcCCCccccHH--HHHHH--HHhCCeeEEE-ecC
Q 021388 206 --TE---------ETRHIIN--REVIDALGPKGVLINIGRGPHVDER--ELVSA--LVEGRLGGAG-LDV 257 (313)
Q Consensus 206 --~~---------~t~~li~--~~~l~~mk~ga~lIn~~rg~~vd~~--al~~a--l~~~~l~ga~-lDV 257 (313)
.+ .+..++. .+.+....|.++++|.+ +.+|.- .+.+. +...++.|.+ +|.
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~ 148 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDP 148 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence 11 0111110 12333445899999996 444443 34444 4567788888 775
No 232
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.05 E-value=0.00097 Score=52.86 Aligned_cols=101 Identities=21% Similarity=0.272 Sum_probs=66.1
Q ss_pred EEEEEcCChHHHHHHHHHHhC--CCCEE-EecCCCCCc------cccccCCCHHHHhh--cCCEEEEecCCChhhhcccC
Q 021388 146 TVGIIGLGRIGMAVAKRAEAF--SCPIN-YYSRTEKPN------LKYKYYPSVVELAS--NCHILVVACPLTEETRHIIN 214 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~--G~~V~-~~~~~~~~~------~~~~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~ 214 (313)
++||||+|.+|+.....+... ++++. ++|++++.. .+...+.+++++++ +.|+|++++|...+.. +-
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~--~~ 79 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE--IA 79 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH--HH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH--HH
Confidence 699999999999999888766 45654 678876532 23446788999988 7999999999543322 21
Q ss_pred HHHHhccCCC-cEEEEcC-CCccccHHHHHHHHHhCCee
Q 021388 215 REVIDALGPK-GVLINIG-RGPHVDERELVSALVEGRLG 251 (313)
Q Consensus 215 ~~~l~~mk~g-a~lIn~~-rg~~vd~~al~~al~~~~l~ 251 (313)
...+ +.| .+++.-- --++-+.+.|.++.++.+..
T Consensus 80 ~~~l---~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~ 115 (120)
T PF01408_consen 80 KKAL---EAGKHVLVEKPLALTLEEAEELVEAAKEKGVK 115 (120)
T ss_dssp HHHH---HTTSEEEEESSSSSSHHHHHHHHHHHHHHTSC
T ss_pred HHHH---HcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCE
Confidence 2233 333 4555521 22445666677777665543
No 233
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.05 E-value=0.0025 Score=59.50 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=62.4
Q ss_pred CCEEEEEcCChHHHHHHHHHHh-CCC-CEEEecCCCCCcc----------c--cccCCCHHHHhhcCCEEEEecCCChhh
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEA-FSC-PINYYSRTEKPNL----------K--YKYYPSVVELASNCHILVVACPLTEET 209 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~-~G~-~V~~~~~~~~~~~----------~--~~~~~~l~e~~~~aDvV~~~lp~~~~t 209 (313)
-+++||||.|..|+..++.+.. +.. +|.+|+|++++.. + .....+.++++.+||+|+.++|.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--- 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--- 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---
Confidence 4689999999999988887764 455 5999999876422 1 223568999999999999998854
Q ss_pred hcccCHHHHhccCCCcEEEEcCC
Q 021388 210 RHIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 210 ~~li~~~~l~~mk~ga~lIn~~r 232 (313)
.-++..+ .+|||+.+.-+|.
T Consensus 194 ~P~~~~~---~l~pg~hV~aiGs 213 (301)
T PRK06407 194 TPIFNRK---YLGDEYHVNLAGS 213 (301)
T ss_pred CcEecHH---HcCCCceEEecCC
Confidence 3566555 4578988777764
No 234
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.98 E-value=0.0025 Score=60.64 Aligned_cols=85 Identities=16% Similarity=0.191 Sum_probs=61.7
Q ss_pred CCEEEEEcCChHHHHHHHHHH-hCCC-CEEEecCCCCCcc---------c--cccCCCHHHHhhcCCEEEEecCCChhhh
Q 021388 144 GKTVGIIGLGRIGMAVAKRAE-AFSC-PINYYSRTEKPNL---------K--YKYYPSVVELASNCHILVVACPLTEETR 210 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~-~~G~-~V~~~~~~~~~~~---------~--~~~~~~l~e~~~~aDvV~~~lp~~~~t~ 210 (313)
-++++|||.|..++..++.+. -+.. +|.+|+|+++... + +....++++++++||+|+.++|.+. ..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CC
Confidence 368999999999988877665 4455 5999999876422 1 2235789999999999999997432 12
Q ss_pred cccCHHHHhccCCCcEEEEcCC
Q 021388 211 HIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 211 ~li~~~~l~~mk~ga~lIn~~r 232 (313)
-++..+ .+|||+.+.-+|.
T Consensus 208 Pvl~~~---~lkpG~hV~aIGs 226 (346)
T PRK07589 208 TILTDD---MVEPGMHINAVGG 226 (346)
T ss_pred ceecHH---HcCCCcEEEecCC
Confidence 456554 4589998887663
No 235
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.97 E-value=0.0013 Score=61.04 Aligned_cols=36 Identities=36% Similarity=0.574 Sum_probs=34.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
.|+.+||+|+|.+|+--.+.+++||++|+++|++..
T Consensus 181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~ 216 (360)
T KOG0023|consen 181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSK 216 (360)
T ss_pred CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCch
Confidence 899999999999999999999999999999998863
No 236
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.93 E-value=0.011 Score=55.65 Aligned_cols=90 Identities=8% Similarity=0.077 Sum_probs=69.3
Q ss_pred HHHHHHHHHHhCCCCEEEecCCCCCc-----------------------cc-------------cccCCC--HHHHhhcC
Q 021388 155 IGMAVAKRAEAFSCPINYYSRTEKPN-----------------------LK-------------YKYYPS--VVELASNC 196 (313)
Q Consensus 155 iG~~iA~~l~~~G~~V~~~~~~~~~~-----------------------~~-------------~~~~~~--l~e~~~~a 196 (313)
||..||..+...|++|..||++++.. .+ .....+ ..+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 78999999999999999999987310 00 001112 55788999
Q ss_pred CEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHH
Q 021388 197 HILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALV 246 (313)
Q Consensus 197 DvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~ 246 (313)
|+|+-++|...+.+..+-+++.+.+++++++ ++.-+......|.+.++
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~ 128 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVA 128 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcC
Confidence 9999999999999888878888889999999 44555567778887774
No 237
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.93 E-value=0.0004 Score=61.38 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=79.3
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----------------------c-----------cccCC
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----------------------K-----------YKYYP 187 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----------------------~-----------~~~~~ 187 (313)
..-+.|+|||.|.||..||+.....|+.|+.+|++++... + .....
T Consensus 9 ~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~t 88 (298)
T KOG2304|consen 9 AEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTST 88 (298)
T ss_pred ccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcC
Confidence 3446899999999999999999999999999998775210 0 00124
Q ss_pred CHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEE-EEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCC
Q 021388 188 SVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVL-INIGRGPHVDERELVSALVEGRLGGAGLDVFENEPH 263 (313)
Q Consensus 188 ~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~l-In~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~ 263 (313)
++.++++++|+|+=++-.+.+.+.-+-+++=...|+.+++ -|+|.- ...++..+++..... ++|-.|.+-|.
T Consensus 89 nv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl---~lt~ia~~~~~~srf-~GlHFfNPvPv 161 (298)
T KOG2304|consen 89 NVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSL---SLTDIASATQRPSRF-AGLHFFNPVPV 161 (298)
T ss_pred CHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccce---eHHHHHhhccChhhh-ceeeccCCchh
Confidence 5667778888887665544333322223333446777776 455543 456677788776654 68888877774
No 238
>PRK09414 glutamate dehydrogenase; Provisional
Probab=96.92 E-value=0.009 Score=58.57 Aligned_cols=110 Identities=15% Similarity=0.170 Sum_probs=73.0
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEe-cCCCC--Cccc-------------------cc-----cCCCHHHH
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY-SRTEK--PNLK-------------------YK-----YYPSVVEL 192 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~-~~~~~--~~~~-------------------~~-----~~~~l~e~ 192 (313)
.++.|++|+|.|+|++|+.+|+.|..+|++|++. |.+.. .+.| +. ...+.+++
T Consensus 228 ~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~i 307 (445)
T PRK09414 228 DSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGSP 307 (445)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCccc
Confidence 4689999999999999999999999999999877 52211 0000 00 00122333
Q ss_pred h-hcCCEEEEecCCChhhhcccCHHHHhccC--CCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecC
Q 021388 193 A-SNCHILVVACPLTEETRHIINREVIDALG--PKGVLINIGRGPHVDERELVSALVEGRLGGAGLDV 257 (313)
Q Consensus 193 ~-~~aDvV~~~lp~~~~t~~li~~~~l~~mk--~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV 257 (313)
+ .+||+++-|.. .+.|+.+....++ .-.+++-.+.+.+ +.+-.+.|.++.+. ++=|+
T Consensus 308 ~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~-~vPD~ 367 (445)
T PRK09414 308 WSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVL-FAPGK 367 (445)
T ss_pred cccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcE-EECch
Confidence 3 36999887664 4567787777774 3456677777777 34455778888776 34454
No 239
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.88 E-value=0.0079 Score=54.83 Aligned_cols=60 Identities=17% Similarity=0.239 Sum_probs=45.4
Q ss_pred CEEEEEcC-ChHHHHHHHHHHh-CCCCEE-EecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecC
Q 021388 145 KTVGIIGL-GRIGMAVAKRAEA-FSCPIN-YYSRTEKPNL-----KYKYYPSVVELASNCHILVVACP 204 (313)
Q Consensus 145 ~~igiiG~-G~iG~~iA~~l~~-~G~~V~-~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp 204 (313)
.+|+|+|+ |.||+.+++.+.. -++++. ++|+..+... +.....+++++++.+|+|+.++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 48999998 9999999999886 468865 5777654321 22345789998889999997775
No 240
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.88 E-value=0.036 Score=48.81 Aligned_cols=41 Identities=12% Similarity=0.234 Sum_probs=36.9
Q ss_pred cccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 138 LTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 138 ~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
...++.|+++.|||.|.+|..-++.|..+|++|.++++...
T Consensus 3 ~~l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 3 VFANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred eEEEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 44579999999999999999999999999999999998654
No 241
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.88 E-value=0.004 Score=58.08 Aligned_cols=58 Identities=17% Similarity=0.254 Sum_probs=43.6
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc-------------c----ccCCCHHHHhhcCCEEEEec
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK-------------Y----KYYPSVVELASNCHILVVAC 203 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~-------------~----~~~~~l~e~~~~aDvV~~~l 203 (313)
++|+|||.|.||..+|..+...|. +|..+|+.++...+ . ....+. +.+++||+|+++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence 689999999999999999987665 89999986643211 0 012345 4578999999986
No 242
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.86 E-value=0.0087 Score=50.51 Aligned_cols=89 Identities=11% Similarity=0.180 Sum_probs=65.9
Q ss_pred CCCEEEEEc--CChHHHHHHHHHHhCCCCEEEecCCCC--Cc----------------cccccCCCHHHHhhcCCEEEEe
Q 021388 143 TGKTVGIIG--LGRIGMAVAKRAEAFSCPINYYSRTEK--PN----------------LKYKYYPSVVELASNCHILVVA 202 (313)
Q Consensus 143 ~g~~igiiG--~G~iG~~iA~~l~~~G~~V~~~~~~~~--~~----------------~~~~~~~~l~e~~~~aDvV~~~ 202 (313)
.|++|++|| .+++.++++..+..||+.+.+..+..- +. .......++++.++++|+|..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 478999999 389999999999999999988887652 11 0123457899999999999876
Q ss_pred cCC----Chh-------hhcccCHHHHhccCCCcEEEEcC
Q 021388 203 CPL----TEE-------TRHIINREVIDALGPKGVLINIG 231 (313)
Q Consensus 203 lp~----~~~-------t~~li~~~~l~~mk~ga~lIn~~ 231 (313)
.-. .+. ....++++.++.+|++++|.-+.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 654 111 11456888999999999988876
No 243
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.85 E-value=0.0045 Score=57.41 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=33.9
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCC
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTE 177 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~ 177 (313)
.+.++++.|+|.|.+|++++..|...|++ |.+++|+.
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 36789999999999999999999999997 99999975
No 244
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.81 E-value=0.0024 Score=60.37 Aligned_cols=58 Identities=26% Similarity=0.402 Sum_probs=47.2
Q ss_pred CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcccc-------ccC---CCHHHHhhcCCEEEE
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY-------KYY---PSVVELASNCHILVV 201 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~-------~~~---~~l~e~~~~aDvV~~ 201 (313)
+++|||||-|..|+-|+...+.+|++|++.|+.++..+.- ..+ ..+.++++.||+|..
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 4799999999999999999999999999999988754321 112 247789999999865
No 245
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.79 E-value=0.0018 Score=53.55 Aligned_cols=105 Identities=19% Similarity=0.243 Sum_probs=70.8
Q ss_pred EEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC----ccccc--------------cCCCHHHHhhcCCEEEEecCCChh
Q 021388 147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP----NLKYK--------------YYPSVVELASNCHILVVACPLTEE 208 (313)
Q Consensus 147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~----~~~~~--------------~~~~l~e~~~~aDvV~~~lp~~~~ 208 (313)
|.|+|.|.||.-+|.+|+..|++|..+.|.... ..+.. ...+..+....+|+|++++....
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~- 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ- 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG-
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc-
Confidence 689999999999999999999999999887610 00100 01112346788999999997443
Q ss_pred hhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEE
Q 021388 209 TRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAG 254 (313)
Q Consensus 209 t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~ 254 (313)
+...+ +.....+++++.++-.--| +-..+.+.+.+...++.++.
T Consensus 80 ~~~~l-~~l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~ 123 (151)
T PF02558_consen 80 LEQAL-QSLKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV 123 (151)
T ss_dssp HHHHH-HHHCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred hHHHH-HHHhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence 44444 4466677788777776666 45566777777566665443
No 246
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.78 E-value=0.0055 Score=57.72 Aligned_cols=111 Identities=17% Similarity=0.165 Sum_probs=68.2
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc-----------------cccCCCHHHHhhcCCEEEEec
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK-----------------YKYYPSVVELASNCHILVVAC 203 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~-----------------~~~~~~l~e~~~~aDvV~~~l 203 (313)
+..++|+|||.|.||..+|..+...|. +|..+|++++...+ .....+. +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 455799999999999999999988785 89999987763210 0112455 5679999999976
Q ss_pred CCC--h--------------hhhcccCHH---HHhccCCCcEEEEcCCCccccHHHHHHHHH--hCCeeEEE
Q 021388 204 PLT--E--------------ETRHIINRE---VIDALGPKGVLINIGRGPHVDERELVSALV--EGRLGGAG 254 (313)
Q Consensus 204 p~~--~--------------~t~~li~~~---~l~~mk~ga~lIn~~rg~~vd~~al~~al~--~~~l~ga~ 254 (313)
-.. + .+..++ .+ .+....|.+++++++.-.-+-...+.+... ..++.|.+
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~-~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIM-DEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 221 1 111111 12 233345777999988543333334433322 24566655
No 247
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.77 E-value=0.0093 Score=54.05 Aligned_cols=88 Identities=18% Similarity=0.323 Sum_probs=59.9
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPK 224 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~g 224 (313)
-++-|+|.|.+++++++.++.+|++|.++|.+++.... .....++.+....| .+.+..+.++
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~--------~~~~~~~~~~~~~~----------~~~~~~~~~~ 162 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPE--------DLPDGVATLVTDEP----------EAEVAEAPPG 162 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccc--------cCCCCceEEecCCH----------HHHHhcCCCC
Confidence 47899999999999999999999999999977541111 01123333222111 2233335567
Q ss_pred cEEEEcCCCccccHHHHHHHHHhCCe
Q 021388 225 GVLINIGRGPHVDERELVSALVEGRL 250 (313)
Q Consensus 225 a~lIn~~rg~~vd~~al~~al~~~~l 250 (313)
+.+|=+.++.-.|.+.|..+|++...
T Consensus 163 t~vvi~th~h~~D~~~L~~aL~~~~~ 188 (246)
T TIGR02964 163 SYFLVLTHDHALDLELCHAALRRGDF 188 (246)
T ss_pred cEEEEEeCChHHHHHHHHHHHhCCCC
Confidence 77777778888888888888855444
No 248
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=96.76 E-value=0.0049 Score=55.54 Aligned_cols=80 Identities=18% Similarity=0.128 Sum_probs=66.2
Q ss_pred HHHHHHHHHhCCCCEEEecCCCCCc----------cccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCc
Q 021388 156 GMAVAKRAEAFSCPINYYSRTEKPN----------LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKG 225 (313)
Q Consensus 156 G~~iA~~l~~~G~~V~~~~~~~~~~----------~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga 225 (313)
|..||-.+...|+.|...+++.+-. .|....++-.+..+.+.+.++..|....|.++. ++.+..++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 6788999999999999999877532 234445566788999999999999998888775 88999999999
Q ss_pred EEEEcCCCccc
Q 021388 226 VLINIGRGPHV 236 (313)
Q Consensus 226 ~lIn~~rg~~v 236 (313)
++.|+.+-+.+
T Consensus 112 VicnTCT~sp~ 122 (340)
T COG4007 112 VICNTCTVSPV 122 (340)
T ss_pred EecccccCchh
Confidence 99999987654
No 249
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.73 E-value=0.0029 Score=50.79 Aligned_cols=83 Identities=16% Similarity=0.250 Sum_probs=50.3
Q ss_pred EEEEEc-CChHHHHHHHHHHh-CCCCE-EEecCCCCCc--cc--------c---ccCCCHHHHhhcCCEEEEecCCChhh
Q 021388 146 TVGIIG-LGRIGMAVAKRAEA-FSCPI-NYYSRTEKPN--LK--------Y---KYYPSVVELASNCHILVVACPLTEET 209 (313)
Q Consensus 146 ~igiiG-~G~iG~~iA~~l~~-~G~~V-~~~~~~~~~~--~~--------~---~~~~~l~e~~~~aDvV~~~lp~~~~t 209 (313)
+|+||| .|.+|+.+.++|.. ..+++ .++.++.... .. . .......+.+.++|+|++|+|....
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~- 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGAS- 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHH-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHH-
Confidence 689999 99999999999986 33453 4455544111 00 0 0111122445999999999984322
Q ss_pred hcccCHHHHhccCCCcEEEEcCCC
Q 021388 210 RHIINREVIDALGPKGVLINIGRG 233 (313)
Q Consensus 210 ~~li~~~~l~~mk~ga~lIn~~rg 233 (313)
.... ... +++|..+||.+..
T Consensus 80 ~~~~-~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 80 KELA-PKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp HHHH-HHH---HHTTSEEEESSST
T ss_pred HHHH-HHH---hhCCcEEEeCCHH
Confidence 2221 222 5789999998853
No 250
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.71 E-value=0.0019 Score=59.69 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=47.6
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcccc----------ccC---CCHHHHhhcCCEEEEecCCC
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLKY----------KYY---PSVVELASNCHILVVACPLT 206 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~~----------~~~---~~l~e~~~~aDvV~~~lp~~ 206 (313)
+.|+++.|||.|.+|++++..|...|+ +|.+++|+.++.... ... .++.+.+.++|+|+.++|..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 678899999999999999999999998 599999986532210 001 12234456788888888754
No 251
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.70 E-value=0.0042 Score=54.52 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=33.7
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT 176 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~ 176 (313)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 45899999999999999999999999998 68888865
No 252
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.66 E-value=0.014 Score=52.90 Aligned_cols=104 Identities=18% Similarity=0.252 Sum_probs=69.6
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEe--------cCCCCC---------cccc--ccC----------CCHH-
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY--------SRTEKP---------NLKY--KYY----------PSVV- 190 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~--------~~~~~~---------~~~~--~~~----------~~l~- 190 (313)
++.|+++.|-|+|++|+.+|+.|...|++|.+. |+..-. ..+. ..+ .+-+
T Consensus 29 ~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 108 (244)
T PF00208_consen 29 SLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDD 108 (244)
T ss_dssp SSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccc
Confidence 589999999999999999999999999998765 322110 0001 101 1121
Q ss_pred HHh-hcCCEEEEecCCChhhhcccCHHHHh-ccCCCcEE-EEcCCCccccHHHHHHHHHhCCee
Q 021388 191 ELA-SNCHILVVACPLTEETRHIINREVID-ALGPKGVL-INIGRGPHVDERELVSALVEGRLG 251 (313)
Q Consensus 191 e~~-~~aDvV~~~lp~~~~t~~li~~~~l~-~mk~ga~l-In~~rg~~vd~~al~~al~~~~l~ 251 (313)
+++ .+||+++.|. ..+.|+.+... .++.++.+ +-.+.+.+ ..++.. .|+++.+.
T Consensus 109 ~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~-t~~a~~-~L~~rGI~ 165 (244)
T PF00208_consen 109 EILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPL-TPEADE-ILRERGIL 165 (244)
T ss_dssp HGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSB-SHHHHH-HHHHTT-E
T ss_pred ccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhc-cHHHHH-HHHHCCCE
Confidence 444 5899999884 45578888888 88777655 45555555 555555 88888886
No 253
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.66 E-value=0.0035 Score=52.90 Aligned_cols=41 Identities=27% Similarity=0.284 Sum_probs=36.8
Q ss_pred cccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCC
Q 021388 136 YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176 (313)
Q Consensus 136 ~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~ 176 (313)
+|...++.|++|.|||.|.+|...++.|...|++|.++++.
T Consensus 5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 34567899999999999999999999999999999999754
No 254
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=96.62 E-value=0.17 Score=46.52 Aligned_cols=177 Identities=16% Similarity=0.178 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhC----CC-------CEEE
Q 021388 104 VADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAF----SC-------PINY 172 (313)
Q Consensus 104 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~----G~-------~V~~ 172 (313)
+|=-+++-+|+.+|-. +..|...+|.|+|.|.-|-.+|+.+... |. +++.
T Consensus 4 Ta~V~lAgllnAlk~~-------------------g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~ 64 (279)
T cd05312 4 TAAVALAGLLAALRIT-------------------GKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWL 64 (279)
T ss_pred HHHHHHHHHHHHHHHh-------------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEE
Confidence 4556777788887733 3568889999999999999999999876 87 6888
Q ss_pred ecCCCC----C-cc-c-----cc-----cCCCHHHHhh--cCCEEEEecCCChhhhcccCHHHHhccC---CCcEEEEcC
Q 021388 173 YSRTEK----P-NL-K-----YK-----YYPSVVELAS--NCHILVVACPLTEETRHIINREVIDALG---PKGVLINIG 231 (313)
Q Consensus 173 ~~~~~~----~-~~-~-----~~-----~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~~~~l~~mk---~ga~lIn~~ 231 (313)
+|+..- . .. . .. ...+|.|+++ ++|+++-+-- .-++++++.++.|. +.+++.=.|
T Consensus 65 vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLS 140 (279)
T cd05312 65 VDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFALS 140 (279)
T ss_pred EcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEECC
Confidence 887531 0 00 0 11 2347999999 8898875431 23689999999998 899999999
Q ss_pred CCccc---cHHHHHHHHHhCC-eeEEEecCCCCCCCCC-CcccCCCceEEccCCCCCcHHH-----HHHHHHHHHHHHHH
Q 021388 232 RGPHV---DERELVSALVEGR-LGGAGLDVFENEPHVP-EELFGLENVVLMPHVGSGTVET-----RKTMADLVLGNLEA 301 (313)
Q Consensus 232 rg~~v---d~~al~~al~~~~-l~ga~lDV~~~Ep~~~-~~L~~~pnv~lTPH~a~~t~~~-----~~~~~~~~~~nl~~ 301 (313)
.-..- ..++.++ ..+|+ |.+.+...-..+.... ...=+..|+++=|=++-..-.+ -+.|...+++-|.+
T Consensus 141 NPt~~~E~~pe~a~~-~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~ 219 (279)
T cd05312 141 NPTSKAECTAEDAYK-WTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALAS 219 (279)
T ss_pred CcCCccccCHHHHHH-hhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHH
Confidence 87652 2233333 23455 5433322111111000 1345688999999876443222 25566666666666
Q ss_pred HHc
Q 021388 302 HFL 304 (313)
Q Consensus 302 ~~~ 304 (313)
+..
T Consensus 220 ~~~ 222 (279)
T cd05312 220 LVT 222 (279)
T ss_pred hCC
Confidence 654
No 255
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=96.62 E-value=0.022 Score=56.13 Aligned_cols=109 Identities=27% Similarity=0.339 Sum_probs=78.3
Q ss_pred cCCCEEEEEcC----ChHHHHHHHHHHhCCC--CEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388 142 FTGKTVGIIGL----GRIGMAVAKRAEAFSC--PINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 142 l~g~~igiiG~----G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~ 215 (313)
+.-++|+|||. |++|..+.+.++..|+ +|+..++......+...+.+++++-...|++++++|. +.+..++ +
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~~l-~ 82 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEILGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQVV-E 82 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCccCCccccCCHHHCCCCCCEEEEecCH-HHHHHHH-H
Confidence 55689999999 8899999999999888 6888888776666777788999998889999999993 2334443 3
Q ss_pred HHHhccCCCcEE-EEcCCCc-----cccHHHHHHHHHhCCeeEE
Q 021388 216 EVIDALGPKGVL-INIGRGP-----HVDERELVSALVEGRLGGA 253 (313)
Q Consensus 216 ~~l~~mk~ga~l-In~~rg~-----~vd~~al~~al~~~~l~ga 253 (313)
+..+ .+-.+++ +..+-++ ...++++.+..+++.++-.
T Consensus 83 e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl 125 (447)
T TIGR02717 83 ECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL 125 (447)
T ss_pred HHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence 3333 3444444 4333222 2346788888888877743
No 256
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.61 E-value=0.0081 Score=56.12 Aligned_cols=86 Identities=21% Similarity=0.247 Sum_probs=57.4
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc-------------c--c-cCCCHHHHhhcCCEEEEecCCC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK-------------Y--K-YYPSVVELASNCHILVVACPLT 206 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~-------------~--~-~~~~l~e~~~~aDvV~~~lp~~ 206 (313)
++|+|||.|.+|+.+|..|...|. +|..+|+..+...+ . . ...+. +.+++||+|+++....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~ 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAP 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCC
Confidence 489999999999999999998884 69999987664221 0 0 11233 4578999999998642
Q ss_pred hh---hhc-cc--C-------HHHHhccCCCcEEEEcC
Q 021388 207 EE---TRH-II--N-------REVIDALGPKGVLINIG 231 (313)
Q Consensus 207 ~~---t~~-li--~-------~~~l~~mk~ga~lIn~~ 231 (313)
.. ++. ++ | ...+....|.+++++++
T Consensus 80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 11 111 11 1 12234456788999987
No 257
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.57 E-value=0.013 Score=57.76 Aligned_cols=109 Identities=13% Similarity=0.167 Sum_probs=70.7
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----------cccccC--CCHHHHhhcCCEEEEecCCChh
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----------LKYKYY--PSVVELASNCHILVVACPLTEE 208 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----------~~~~~~--~~l~e~~~~aDvV~~~lp~~~~ 208 (313)
-+.+++|+|+|+|..|.++|+.|+..|++|.++|+..... .+.... ....+.+.++|+|+.. |.-+.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~ 89 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI 89 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence 3678999999999999999999999999999999764311 121111 1223445789998887 54332
Q ss_pred hhc-----------ccCH-HHHhcc-CCCcEEEEcCCCccccHHHHHHHHHhCCe
Q 021388 209 TRH-----------IINR-EVIDAL-GPKGVLINIGRGPHVDERELVSALVEGRL 250 (313)
Q Consensus 209 t~~-----------li~~-~~l~~m-k~ga~lIn~~rg~~vd~~al~~al~~~~l 250 (313)
+.. ++++ +.+... +...+-|--+.|.....+-+...|+....
T Consensus 90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~ 144 (458)
T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGY 144 (458)
T ss_pred CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 221 1221 222222 32345566667988888888888876544
No 258
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.56 E-value=0.024 Score=52.61 Aligned_cols=109 Identities=13% Similarity=0.207 Sum_probs=78.4
Q ss_pred CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCC--CCCccccccCCCHHHHhhcCCEEEEecCCChhhhc----------
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT--EKPNLKYKYYPSVVELASNCHILVVACPLTEETRH---------- 211 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~--~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~---------- 211 (313)
|++++|||--.--..+++.|...|++|..|--. ...-.+.....+.++.++++|+|++=+|.+.....
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~ 80 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKV 80 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCc
Confidence 689999999999999999999999998766533 12222444455566679999999999997655321
Q ss_pred ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCC
Q 021388 212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFE 259 (313)
Q Consensus 212 li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~ 259 (313)
.++++.++.++++++ +-+| ++..++.++.++..+. ..|.++
T Consensus 81 ~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~--v~~~~~ 121 (287)
T TIGR02853 81 VLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK--LIELFE 121 (287)
T ss_pred cccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe--EEEEEe
Confidence 246889999997665 4444 3446676788888887 665443
No 259
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.56 E-value=0.0061 Score=57.84 Aligned_cols=38 Identities=26% Similarity=0.273 Sum_probs=33.8
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTE 177 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~ 177 (313)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|+..
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 45999999999999999999999999998 688888753
No 260
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.55 E-value=0.071 Score=48.37 Aligned_cols=178 Identities=15% Similarity=0.138 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCC-----------CEEE
Q 021388 104 VADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC-----------PINY 172 (313)
Q Consensus 104 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~-----------~V~~ 172 (313)
+|=-+++-+|+.+|-. +..|...+|.|+|.|..|-.+|+.+...+. +++.
T Consensus 4 TaaV~lAgllnAlk~~-------------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~ 64 (254)
T cd00762 4 TASVAVAGLLAALKVT-------------------KKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWX 64 (254)
T ss_pred hHHHHHHHHHHHHHHh-------------------CCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEE
Confidence 4555777788887732 346888999999999999999999987765 5788
Q ss_pred ecCCCC----C--cc----c---c----ccCCCHHHHhh--cCCEEEEecCCChhhhcccCHHHHhccC---CCcEEEEc
Q 021388 173 YSRTEK----P--NL----K---Y----KYYPSVVELAS--NCHILVVACPLTEETRHIINREVIDALG---PKGVLINI 230 (313)
Q Consensus 173 ~~~~~~----~--~~----~---~----~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~~~~l~~mk---~ga~lIn~ 230 (313)
+|+..- . .. . + ....+|.|+++ +.|+++-.-- ..+++.++.++.|. +.+++.=.
T Consensus 65 vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaL 140 (254)
T cd00762 65 VDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSR----VGGAFTPEVIRAXAEINERPVIFAL 140 (254)
T ss_pred ECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCC----CCCCCCHHHHHHHhhcCCCCEEEEC
Confidence 886431 0 00 0 1 11348999999 9998875431 24689999999999 89999999
Q ss_pred CCCccc---cHHHHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHH-----HHHHHHHHHHHHH
Q 021388 231 GRGPHV---DERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETR-----KTMADLVLGNLEA 301 (313)
Q Consensus 231 ~rg~~v---d~~al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~-----~~~~~~~~~nl~~ 301 (313)
|+-..- ..++.+++=+.+.|.+.+.-.+..+-.... ..-+..|+++-|=++-..-.+. +.|.-.+++-|.+
T Consensus 141 SNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~ 220 (254)
T cd00762 141 SNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIAS 220 (254)
T ss_pred CCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHh
Confidence 887762 333333332222344333222111110000 2447889999997764433222 4455555555555
Q ss_pred HHc
Q 021388 302 HFL 304 (313)
Q Consensus 302 ~~~ 304 (313)
+..
T Consensus 221 ~v~ 223 (254)
T cd00762 221 SVT 223 (254)
T ss_pred hCC
Confidence 543
No 261
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.54 E-value=0.044 Score=53.74 Aligned_cols=151 Identities=16% Similarity=0.114 Sum_probs=87.2
Q ss_pred ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEE-EecCCCC--Cccc-----------------------------cccC
Q 021388 139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPIN-YYSRTEK--PNLK-----------------------------YKYY 186 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~-~~~~~~~--~~~~-----------------------------~~~~ 186 (313)
+.++.|+++.|=|+|++|+..|+.|..+|++|+ +.|.+.. .+.| ....
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 346899999999999999999999999999988 4454410 0000 0001
Q ss_pred CCHHH-HhhcCCEEEEecCCChhhhcccCHHHHhcc-CCCcEEEE-cCCCccccHHHHHHHHHhCCeeEEEecCCCCCCC
Q 021388 187 PSVVE-LASNCHILVVACPLTEETRHIINREVIDAL-GPKGVLIN-IGRGPHVDERELVSALVEGRLGGAGLDVFENEPH 263 (313)
Q Consensus 187 ~~l~e-~~~~aDvV~~~lp~~~~t~~li~~~~l~~m-k~ga~lIn-~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~ 263 (313)
+-++ +--.||+.+-|. +.+.|+.+..+.+ +.++.+|- .+.+.+ ..+ -.+.|+++.+. ++=|..-+-=-
T Consensus 312 -~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~-t~e-A~~~L~~~GI~-~~PD~~aNAGG 382 (454)
T PTZ00079 312 -PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPT-TIE-ATHLFKKNGVI-FCPGKAANAGG 382 (454)
T ss_pred -CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCC-CHH-HHHHHHHCCcE-EEChhhhcCCC
Confidence 1112 224688876554 6778888887766 55655554 445554 444 45677777776 34443321110
Q ss_pred C-CC--cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 021388 264 V-PE--ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHF 303 (313)
Q Consensus 264 ~-~~--~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~ 303 (313)
. -+ ++.+ |. -+..|..++..+++.+++.+...+.+
T Consensus 383 V~vS~~E~~Q--n~---~~~~W~~eeV~~~L~~~M~~~~~~~~ 420 (454)
T PTZ00079 383 VAISGLEMSQ--NA---ARLQWTAEEVDEKLREIMKSIFEACV 420 (454)
T ss_pred eeeehHHhhh--hh---cccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 01 1222 11 14555556666666666555554443
No 262
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.54 E-value=0.0045 Score=60.33 Aligned_cols=106 Identities=13% Similarity=0.118 Sum_probs=67.4
Q ss_pred CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcccc-----ccCCCHHHHhhcCCEEEEecCCChhhhc-------
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY-----KYYPSVVELASNCHILVVACPLTEETRH------- 211 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~-----~~~~~l~e~~~~aDvV~~~lp~~~~t~~------- 211 (313)
.++|.|||+|.+|.++|+.|+..|++|.++|++....... ......+.+..++|+|+.+.+..+....
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~ 82 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS 82 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence 4689999999999999999999999999999765422110 0112233445779988877654432111
Q ss_pred ---ccCHHHH--hc--cCCC-cEEEEcCCCccccHHHHHHHHHhCC
Q 021388 212 ---IINREVI--DA--LGPK-GVLINIGRGPHVDERELVSALVEGR 249 (313)
Q Consensus 212 ---li~~~~l--~~--mk~g-a~lIn~~rg~~vd~~al~~al~~~~ 249 (313)
++.+..+ .. +.+. .+=|--+-|.....+-+.+.|+...
T Consensus 83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g 128 (418)
T PRK00683 83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLG 128 (418)
T ss_pred CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcC
Confidence 2222222 11 2122 3456666788888888888887644
No 263
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.53 E-value=0.05 Score=52.42 Aligned_cols=146 Identities=18% Similarity=0.284 Sum_probs=91.4
Q ss_pred ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC---Cccc---------------------cccCCCHHHH-h
Q 021388 139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK---PNLK---------------------YKYYPSVVEL-A 193 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~---~~~~---------------------~~~~~~l~e~-~ 193 (313)
+.++.|++|+|=|+|++|+..|+.|...|.+|++.|.+.. ...| ..... -+++ -
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~-~~e~~~ 280 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYIT-NEELLE 280 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEcc-cccccc
Confidence 3358999999999999999999999999999998876554 1111 11111 2343 3
Q ss_pred hcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCc
Q 021388 194 SNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLEN 273 (313)
Q Consensus 194 ~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pn 273 (313)
-.||+.+-| .+.+.|+.+...+++-. +++-.+.+++- .++--..+ +..+. ++=|. |.+.-.
T Consensus 281 ~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~-erGIl-~~PD~----------laNAGG 341 (411)
T COG0334 281 VDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILL-ERGIL-VVPDI----------LANAGG 341 (411)
T ss_pred ccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHH-HCCCE-EcChh----------hccCcC
Confidence 468877543 36778999988988866 77788888765 44433333 44454 23333 222222
Q ss_pred eEEcc--------CCCCCcHHHHHHHHHHHHHHHHHHHc
Q 021388 274 VVLMP--------HVGSGTVETRKTMADLVLGNLEAHFL 304 (313)
Q Consensus 274 v~lTP--------H~a~~t~~~~~~~~~~~~~nl~~~~~ 304 (313)
|+.+= -..|..++..+++..++.+..+.+.+
T Consensus 342 V~vS~~E~~qn~~~~~wt~eev~~kl~~im~~~~~~~~~ 380 (411)
T COG0334 342 VIVSYLEWVQNAQGLYWTEEEVDEKLERIMVNAFEAVYQ 380 (411)
T ss_pred eeeehHHHHhhcccCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 11244556677777777777666654
No 264
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.51 E-value=0.0055 Score=57.03 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=42.0
Q ss_pred EEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCccc-------------c----ccCCCHHHHhhcCCEEEEecC
Q 021388 147 VGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLK-------------Y----KYYPSVVELASNCHILVVACP 204 (313)
Q Consensus 147 igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~-------------~----~~~~~l~e~~~~aDvV~~~lp 204 (313)
|+|||.|.||..+|..+...|. +|..+|++++...+ . ....+. +.+++||+|+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999999986665 99999987653110 0 012344 45899999999873
No 265
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.47 E-value=0.0035 Score=56.01 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=48.4
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc-------ccc-------CCCHHHH-hhcCCEEEEecCCChh
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK-------YKY-------YPSVVEL-ASNCHILVVACPLTEE 208 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~-------~~~-------~~~l~e~-~~~aDvV~~~lp~~~~ 208 (313)
+++.|+|+|.+|..+|+.|...|+.|...|+.++.... ... ...|.++ +.++|+++.++..+..
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~ 79 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEV 79 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHH
Confidence 57999999999999999999999999999987653211 110 1224554 7889999998886544
No 266
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=96.47 E-value=0.0056 Score=48.01 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHhCCCCEEEecCCCCCcc--------ccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCc
Q 021388 154 RIGMAVAKRAEAFSCPINYYSRTEKPNL--------KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKG 225 (313)
Q Consensus 154 ~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga 225 (313)
+-+..+++.|+..|++|.+||+...... +.....++++.++.+|+|+++++..+ -+.+--++....|+++.
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~-f~~l~~~~~~~~~~~~~ 95 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDE-FRELDWEEIAKLMRKPP 95 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GG-GGCCGHHHHHHHSCSSE
T ss_pred CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHH-HhccCHHHHHHhcCCCC
Confidence 4567899999999999999999875322 23345689999999999999987443 22232345667788999
Q ss_pred EEEEc
Q 021388 226 VLINI 230 (313)
Q Consensus 226 ~lIn~ 230 (313)
+++|+
T Consensus 96 ~iiD~ 100 (106)
T PF03720_consen 96 VIIDG 100 (106)
T ss_dssp EEEES
T ss_pred EEEEC
Confidence 99997
No 267
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=96.39 E-value=0.022 Score=52.81 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=33.3
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCC
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTE 177 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~ 177 (313)
.+.|+++.|+|.|..+++++..|...|. +|.+++|+.
T Consensus 121 ~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~ 158 (288)
T PRK12749 121 DIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD 158 (288)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4678999999999999999999998897 699999985
No 268
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=96.39 E-value=0.028 Score=52.56 Aligned_cols=62 Identities=11% Similarity=0.194 Sum_probs=49.6
Q ss_pred cCCCEEEEEcC---ChHHHHHHHHHHhCCCCEEEecCCCCCccc---cccCCCHHHHhhcCCEEEEec
Q 021388 142 FTGKTVGIIGL---GRIGMAVAKRAEAFSCPINYYSRTEKPNLK---YKYYPSVVELASNCHILVVAC 203 (313)
Q Consensus 142 l~g~~igiiG~---G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~---~~~~~~l~e~~~~aDvV~~~l 203 (313)
+.|++|+++|= |++.++++..+..+|+++.+..|..-.... .....++++.++.+|+|....
T Consensus 154 l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~d~~ea~~~aDvvyt~~ 221 (305)
T PRK00856 154 LEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGMPEYGVHTDLDEVIEDADVVMMLR 221 (305)
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccccceEEECCHHHHhCCCCEEEECC
Confidence 78899999988 589999999999999999988875432211 234678999999999987743
No 269
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.37 E-value=0.014 Score=54.71 Aligned_cols=107 Identities=21% Similarity=0.266 Sum_probs=65.4
Q ss_pred CCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc----------------cccCCCHHHHhhcCCEEEEecCC
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK----------------YKYYPSVVELASNCHILVVACPL 205 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~----------------~~~~~~l~e~~~~aDvV~~~lp~ 205 (313)
..+|+|||.|.+|..+|-.|...|. ++..+|+..+...+ .....+.++ +++||+|+++.-.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~ 81 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGA 81 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCC
Confidence 3599999999999999999987665 58899987653211 011234554 8999999997632
Q ss_pred --Ch-hhhc-cc--CH-------HHHhccCCCcEEEEcCCCccccHHH--HHHH--HHhCCeeEE
Q 021388 206 --TE-ETRH-II--NR-------EVIDALGPKGVLINIGRGPHVDERE--LVSA--LVEGRLGGA 253 (313)
Q Consensus 206 --~~-~t~~-li--~~-------~~l~~mk~ga~lIn~~rg~~vd~~a--l~~a--l~~~~l~ga 253 (313)
.+ .++. ++ |. +.+....|.+++++++- .+|.-+ +.+. +...++.|.
T Consensus 82 ~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN--P~d~~t~~~~k~sg~p~~~viG~ 144 (312)
T cd05293 82 RQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN--PVDIMTYVAWKLSGLPKHRVIGS 144 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC--hHHHHHHHHHHHhCCCHHHEEec
Confidence 21 1221 11 11 23334468899999983 344322 3332 334555555
No 270
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.35 E-value=0.0085 Score=58.60 Aligned_cols=107 Identities=12% Similarity=0.058 Sum_probs=67.4
Q ss_pred CEEEEEcCChHHHHHHH---HH---HhCCCCEEEecCCCCCcc-----------------ccccCCCHHHHhhcCCEEEE
Q 021388 145 KTVGIIGLGRIGMAVAK---RA---EAFSCPINYYSRTEKPNL-----------------KYKYYPSVVELASNCHILVV 201 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~---~l---~~~G~~V~~~~~~~~~~~-----------------~~~~~~~l~e~~~~aDvV~~ 201 (313)
.+|+|||.|.+|.+.+- .+ ...|.+|..||++++... ......++++.++.||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 37999999999998555 22 334678999999875211 11234578899999999999
Q ss_pred ecCCChh---hh--------cc---------------------cCHHHHhccC---CCcEEEEcCCCccccHHHHHHHHH
Q 021388 202 ACPLTEE---TR--------HI---------------------INREVIDALG---PKGVLINIGRGPHVDERELVSALV 246 (313)
Q Consensus 202 ~lp~~~~---t~--------~l---------------------i~~~~l~~mk---~ga~lIn~~rg~~vd~~al~~al~ 246 (313)
++|.... .+ ++ +-.+..+.++ |.++++|.+...-+-..++.+...
T Consensus 81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~ 160 (423)
T cd05297 81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP 160 (423)
T ss_pred eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence 9983110 00 00 0123333333 688888888776666666665554
Q ss_pred hCCeeE
Q 021388 247 EGRLGG 252 (313)
Q Consensus 247 ~~~l~g 252 (313)
.++.|
T Consensus 161 -~rviG 165 (423)
T cd05297 161 -IKTVG 165 (423)
T ss_pred -CCEEE
Confidence 34443
No 271
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.31 E-value=0.0061 Score=53.93 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=58.8
Q ss_pred ccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc----------cccCCCHHHHhhcCCEEEEecCCC
Q 021388 137 KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK----------YKYYPSVVELASNCHILVVACPLT 206 (313)
Q Consensus 137 ~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~----------~~~~~~l~e~~~~aDvV~~~lp~~ 206 (313)
+...++.|+++.|||-|.+|..=++.+...|++|+++++...+... .....+.+ .+..+++|+.+++..
T Consensus 5 Pl~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~-~~~~~~lviaAt~d~ 83 (210)
T COG1648 5 PLFLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAE-DLDDAFLVIAATDDE 83 (210)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChh-hhcCceEEEEeCCCH
Confidence 4556799999999999999999999999999999999987632110 00111222 233477777776533
Q ss_pred hhhhcccCHHHHhccCCCcEEEEc
Q 021388 207 EETRHIINREVIDALGPKGVLINI 230 (313)
Q Consensus 207 ~~t~~li~~~~l~~mk~ga~lIn~ 230 (313)
+ +|++.+...++-.++||+
T Consensus 84 ~-----ln~~i~~~a~~~~i~vNv 102 (210)
T COG1648 84 E-----LNERIAKAARERRILVNV 102 (210)
T ss_pred H-----HHHHHHHHHHHhCCceec
Confidence 2 345555555555566665
No 272
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=96.31 E-value=0.024 Score=51.90 Aligned_cols=101 Identities=18% Similarity=0.145 Sum_probs=60.0
Q ss_pred CEEEEEc-CChHHHHHHHHHHh-CCCCEE-EecCCCCCc-------------cccccCCCHHHHhhcCCEEEEecCCChh
Q 021388 145 KTVGIIG-LGRIGMAVAKRAEA-FSCPIN-YYSRTEKPN-------------LKYKYYPSVVELASNCHILVVACPLTEE 208 (313)
Q Consensus 145 ~~igiiG-~G~iG~~iA~~l~~-~G~~V~-~~~~~~~~~-------------~~~~~~~~l~e~~~~aDvV~~~lp~~~~ 208 (313)
.+|+|+| +|.||+.+++.+.. -++++. ++|+..... .+.....+++++...+|+|+.+.| |.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~--p~ 79 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT--PE 79 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC--hH
Confidence 3799999 69999999999875 578865 567432111 122334678888667999999886 32
Q ss_pred hhcccCHHHHhccCCCcEEEEcCCCcc-ccHHHHHHHHHhCCe
Q 021388 209 TRHIINREVIDALGPKGVLINIGRGPH-VDERELVSALVEGRL 250 (313)
Q Consensus 209 t~~li~~~~l~~mk~ga~lIn~~rg~~-vd~~al~~al~~~~l 250 (313)
... +-....++.|.-+|-...|-- -+.+.|.++.++..+
T Consensus 80 ~~~---~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~ 119 (266)
T TIGR00036 80 GVL---NHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGI 119 (266)
T ss_pred HHH---HHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCc
Confidence 221 223334455544444334432 234445666566443
No 273
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.29 E-value=0.017 Score=54.99 Aligned_cols=83 Identities=18% Similarity=0.222 Sum_probs=54.3
Q ss_pred CEEEEEcC-ChHHHHHHHHHHhC-CCCEE-EecCCCC--Ccc--------cc-c-cC--CCHHHHhhcCCEEEEecCCCh
Q 021388 145 KTVGIIGL-GRIGMAVAKRAEAF-SCPIN-YYSRTEK--PNL--------KY-K-YY--PSVVELASNCHILVVACPLTE 207 (313)
Q Consensus 145 ~~igiiG~-G~iG~~iA~~l~~~-G~~V~-~~~~~~~--~~~--------~~-~-~~--~~l~e~~~~aDvV~~~lp~~~ 207 (313)
++|+|+|. |.+|+.+++.|... +.++. .++++.. +.. +. . .. .+.++++.++|+|++|+|...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 47999998 99999999999977 56777 4454331 111 10 0 11 144566668999999999542
Q ss_pred hhhcccCHHHHhc-cCCCcEEEEcCCC
Q 021388 208 ETRHIINREVIDA-LGPKGVLINIGRG 233 (313)
Q Consensus 208 ~t~~li~~~~l~~-mk~ga~lIn~~rg 233 (313)
. .+.... .+.|..+||.|-.
T Consensus 81 s------~~~~~~~~~~G~~VIDlS~~ 101 (346)
T TIGR01850 81 S------AELAPELLAAGVKVIDLSAD 101 (346)
T ss_pred H------HHHHHHHHhCCCEEEeCChh
Confidence 2 333333 2578999999843
No 274
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.27 E-value=0.029 Score=52.39 Aligned_cols=107 Identities=19% Similarity=0.224 Sum_probs=71.5
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC------ccccc-----------cCCCHHHHhhcCCEEEEecCCCh
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP------NLKYK-----------YYPSVVELASNCHILVVACPLTE 207 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~------~~~~~-----------~~~~l~e~~~~aDvV~~~lp~~~ 207 (313)
++|+|+|.|.||.-+|-.|...|.+|..++|..+. ..|.. ......+.....|+|++++-..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 57999999999999999999999999999986421 11110 0011112245789999998644
Q ss_pred hhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEE
Q 021388 208 ETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAG 254 (313)
Q Consensus 208 ~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~ 254 (313)
++...+ +...+.+.+++.++-.--| +-.++.+.+.+.+.++.++.
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~ 126 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFAS 126 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEE
Confidence 344333 5566778888887777555 34456677777666666543
No 275
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.25 E-value=0.0093 Score=56.05 Aligned_cols=89 Identities=17% Similarity=0.281 Sum_probs=57.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc----------c----ccCCCHHHHhhcCCEEEEecCC-
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK----------Y----KYYPSVVELASNCHILVVACPL- 205 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~----------~----~~~~~l~e~~~~aDvV~~~lp~- 205 (313)
.+++|+|||.|.+|..+|-.+...|. ++..+|++.+...+ + ....+..+.+++||+|+++.-.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~ 84 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP 84 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence 56799999999999999999998887 69999987653221 0 0011223558999999997643
Q ss_pred -Ch-hhhc-cc--C----HHHHh---ccCCCcEEEEcC
Q 021388 206 -TE-ETRH-II--N----REVID---ALGPKGVLINIG 231 (313)
Q Consensus 206 -~~-~t~~-li--~----~~~l~---~mk~ga~lIn~~ 231 (313)
.+ .++. ++ | ++... .-.+.+++++++
T Consensus 85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 21 1221 11 1 22222 234688999987
No 276
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.24 E-value=0.022 Score=55.39 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=62.0
Q ss_pred cCCCEEEEEcC----------ChHHHHHHHHHHhCCCCEEEecCCCCCcc--ccccCCCHHHHhhcCCEEEEecCCChhh
Q 021388 142 FTGKTVGIIGL----------GRIGMAVAKRAEAFSCPINYYSRTEKPNL--KYKYYPSVVELASNCHILVVACPLTEET 209 (313)
Q Consensus 142 l~g~~igiiG~----------G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~e~~~~aDvV~~~lp~~~~t 209 (313)
+.|++|+|+|+ .+-...+++.|...|++|.+||+...... ......++++.++.+|+|+++....+ -
T Consensus 311 ~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~ad~~v~~t~~~~-~ 389 (411)
T TIGR03026 311 LKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPLIDDLEEALKGADALVILTDHDE-F 389 (411)
T ss_pred ccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcccCCCHHHHHhCCCEEEEecCCHH-H
Confidence 68899999998 45778899999999999999999754322 11124688899999999999987543 1
Q ss_pred hcccCHHHHh-ccCCCcEEEEc
Q 021388 210 RHIINREVID-ALGPKGVLINI 230 (313)
Q Consensus 210 ~~li~~~~l~-~mk~ga~lIn~ 230 (313)
+. ++-+.+. .|+ ..+++|+
T Consensus 390 ~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 390 KD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred hc-cCHHHHHHhcC-CCEEEeC
Confidence 22 3433343 454 5578874
No 277
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=96.21 E-value=0.011 Score=48.74 Aligned_cols=85 Identities=18% Similarity=0.324 Sum_probs=50.5
Q ss_pred EEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcE
Q 021388 147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGV 226 (313)
Q Consensus 147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~ 226 (313)
+-|+|.|.+|+++++.++.+|++|.++|++++. +..++-+ .+.+. ++ +. +.+ .+.+++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e~-------------~~~~~~~-~~~~~-~~---~~--~~~-~~~~~t~ 59 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPER-------------FPEADEV-ICIPP-DD---IL--EDL-EIDPNTA 59 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CCC--------------TTSSEE-ECSHH-HH---HH--HHC--S-TT-E
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCccc-------------cCCCCcc-EecCh-HH---HH--hcc-CCCCCeE
Confidence 468999999999999999999999999987531 1234442 22221 11 10 111 4566666
Q ss_pred EEEcCCCccccHHHHHHHHHhCCeeEEE
Q 021388 227 LINIGRGPHVDERELVSALVEGRLGGAG 254 (313)
Q Consensus 227 lIn~~rg~~vd~~al~~al~~~~l~ga~ 254 (313)
+| +.++.-.|.+.|.++|+. ...+.+
T Consensus 60 Vv-~th~h~~D~~~L~~~l~~-~~~YiG 85 (136)
T PF13478_consen 60 VV-MTHDHELDAEALEAALAS-PARYIG 85 (136)
T ss_dssp EE---S-CCCHHHHHHHHTTS-S-SEEE
T ss_pred EE-EcCCchhHHHHHHHHHcC-CCCEEE
Confidence 66 788888898888888877 444333
No 278
>PRK11579 putative oxidoreductase; Provisional
Probab=96.21 E-value=0.021 Score=54.11 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=45.4
Q ss_pred CEEEEEcCChHHHH-HHHHHHh-CCCCEE-EecCCCCCcc----ccccCCCHHHHhh--cCCEEEEecCCChh
Q 021388 145 KTVGIIGLGRIGMA-VAKRAEA-FSCPIN-YYSRTEKPNL----KYKYYPSVVELAS--NCHILVVACPLTEE 208 (313)
Q Consensus 145 ~~igiiG~G~iG~~-iA~~l~~-~G~~V~-~~~~~~~~~~----~~~~~~~l~e~~~--~aDvV~~~lp~~~~ 208 (313)
.++||||+|.||+. .+..++. -++++. ++|++++... +...+.+++++++ +.|+|++++|...+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H 77 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTH 77 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHH
Confidence 48999999999985 5666654 367765 5777654321 2234678999986 57999999995443
No 279
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.18 E-value=0.0094 Score=55.78 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=45.9
Q ss_pred CEEEEEcCChHHHHHHHHHHhCC--CCEEEecCCCCCccc-------cc--------cCCCHHHHhhcCCEEEEecCCC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFS--CPINYYSRTEKPNLK-------YK--------YYPSVVELASNCHILVVACPLT 206 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G--~~V~~~~~~~~~~~~-------~~--------~~~~l~e~~~~aDvV~~~lp~~ 206 (313)
++|+|||.|.+|..+|..|...| .+|..+|++.+...+ .. ...+. +.+++||+|+++.+..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 47999999999999999999888 479999987653221 00 01233 5589999999998753
No 280
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=96.17 E-value=0.021 Score=53.56 Aligned_cols=90 Identities=24% Similarity=0.292 Sum_probs=63.6
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHh-------CCCCEEEecCCCC--C------------------------ccccccCCC
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEA-------FSCPINYYSRTEK--P------------------------NLKYKYYPS 188 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~-------~G~~V~~~~~~~~--~------------------------~~~~~~~~~ 188 (313)
-.-++|+|||.|+.|+.+|+.+.. |..+|..|-+... . +....+.++
T Consensus 19 ~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 19 RDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred cCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 344789999999999999998863 3334554432111 1 001123568
Q ss_pred HHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCC
Q 021388 189 VVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG 233 (313)
Q Consensus 189 l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg 233 (313)
+.+.+.+||+++..+|-+.- .. +-+++....|+++..|....|
T Consensus 99 l~ea~~dADilvf~vPhQf~-~~-ic~~l~g~vk~~~~aISL~KG 141 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVPHQFI-PR-ICEQLKGYVKPGATAISLIKG 141 (372)
T ss_pred HHHHhccCCEEEEeCChhhH-HH-HHHHHhcccCCCCeEEEeecc
Confidence 99999999999999995432 22 347788899999999998877
No 281
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.12 E-value=0.015 Score=56.97 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=47.8
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------cccc-------cCCCHHHH-hhcCCEEEEecCCChh
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------LKYK-------YYPSVVEL-ASNCHILVVACPLTEE 208 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------~~~~-------~~~~l~e~-~~~aDvV~~~lp~~~~ 208 (313)
+++.|+|+|.+|+.+++.|...|++|.+++++++.. .+.. ....++++ +.++|.|+++++....
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 478999999999999999999999999999866421 1111 11234455 7889999999986544
No 282
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.11 E-value=0.038 Score=54.18 Aligned_cols=108 Identities=18% Similarity=0.187 Sum_probs=70.2
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc----------ccc--cCCCHHHHhhcCCEEEEecCCChh
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL----------KYK--YYPSVVELASNCHILVVACPLTEE 208 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~----------~~~--~~~~l~e~~~~aDvV~~~lp~~~~ 208 (313)
.+.++++.|+|.|.+|.++|+.|...|++|.++|+...... +.. .....++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 36789999999999999999999999999999998752211 111 112233556789999887643333
Q ss_pred hhccc----------C-HHHHhc-cCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388 209 TRHII----------N-REVIDA-LGPKGVLINIGRGPHVDERELVSALVEG 248 (313)
Q Consensus 209 t~~li----------~-~~~l~~-mk~ga~lIn~~rg~~vd~~al~~al~~~ 248 (313)
...+. . .+.+.. .+...+-|--+.|.....+-+.+.|+..
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~ 133 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNA 133 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHc
Confidence 22111 1 112222 2322344556678888888888888764
No 283
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=96.11 E-value=0.2 Score=52.29 Aligned_cols=157 Identities=11% Similarity=0.117 Sum_probs=108.1
Q ss_pred CcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCC-
Q 021388 90 GVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC- 168 (313)
Q Consensus 90 gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~- 168 (313)
+|++.|.. .++ +|=-+++-+++.+|-. +..+...+|.|.|.|.-|-.+++.|...|.
T Consensus 153 ~ip~f~DD-~~G--Ta~v~lA~l~na~~~~-------------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 210 (752)
T PRK07232 153 DIPVFHDD-QHG--TAIISAAALLNALELV-------------------GKKIEDVKIVVSGAGAAAIACLNLLVALGAK 210 (752)
T ss_pred CCCeeccc-cch--HHHHHHHHHHHHHHHh-------------------CCChhhcEEEEECccHHHHHHHHHHHHcCCC
Confidence 68999984 443 5556777888887733 456888999999999999999999999998
Q ss_pred --CEEEecCCCC----C-c--cc-----c--ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388 169 --PINYYSRTEK----P-N--LK-----Y--KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 169 --~V~~~~~~~~----~-~--~~-----~--~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~r 232 (313)
+++.+|+..- . . .. + ....+|.|+++.+|+++- +. +.++++++.++.|.+.+++.=.+.
T Consensus 211 ~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG-~s----~~g~~~~~~v~~M~~~piifalsN 285 (752)
T PRK07232 211 KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLG-LS----AAGVLTPEMVKSMADNPIIFALAN 285 (752)
T ss_pred cccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEE-cC----CCCCCCHHHHHHhccCCEEEecCC
Confidence 6888886431 1 0 00 1 123589999999998764 33 247899999999999999999998
Q ss_pred CccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCC
Q 021388 233 GPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGS 282 (313)
Q Consensus 233 g~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~ 282 (313)
...--..+.+.....+.+.+.+ ..- .-=|..|+++-|-++-
T Consensus 286 P~~E~~p~~a~~~~~~~i~atG-----rs~----~pnQ~NN~~~FPgi~~ 326 (752)
T PRK07232 286 PDPEITPEEAKAVRPDAIIATG-----RSD----YPNQVNNVLCFPYIFR 326 (752)
T ss_pred CCccCCHHHHHHhcCCEEEEEC-----CcC----CCCcccceeecchhhH
Confidence 7753222222333334455333 111 1235778888886653
No 284
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.09 E-value=0.013 Score=52.37 Aligned_cols=147 Identities=16% Similarity=0.083 Sum_probs=82.7
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCC-------------ccc-------------------ccc-
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKP-------------NLK-------------------YKY- 185 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~-------------~~~-------------------~~~- 185 (313)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|...-. ..+ ...
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46899999999999999999999999998 57777643210 011 000
Q ss_pred -----CCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCC
Q 021388 186 -----YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFEN 260 (313)
Q Consensus 186 -----~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~ 260 (313)
..++.++++++|+|+.|+. +..++..+++...+ .+.-+|+++-.+ ..|.. -++.+
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g~~g---------------~~g~v-~~~~p 156 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGAVLG---------------FEGQV-TVFIP 156 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEEecc---------------CEEEE-EEECC
Confidence 1224467788998887765 55666666554433 344556654221 12211 11211
Q ss_pred C--CCCCCcccCC-Cce-EEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021388 261 E--PHVPEELFGL-ENV-VLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP 307 (313)
Q Consensus 261 E--p~~~~~L~~~-pnv-~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~ 307 (313)
. |- ..-++.. +.. .-++..++.......-+..+++..+.+++.|.+
T Consensus 157 ~~~~c-~~c~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~a~e~i~~l~g~~ 206 (228)
T cd00757 157 GEGPC-YRCLFPEPPPPGVPSCAEAGVLGPLVGVIGSLQALEALKILLGIG 206 (228)
T ss_pred CCCCC-ccccCCCCCCCCCCccccCCcchhHHHHHHHHHHHHHHHHHhCCC
Confidence 1 10 0001100 000 112233444445566677888888889998774
No 285
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.08 E-value=0.018 Score=55.49 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=61.8
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHHhC-CCCEEEecCCCCCcc--c--c--------ccCCCHHH-HhhcCCEEEEecCCC
Q 021388 142 FTGKTVGIIGL-GRIGMAVAKRAEAF-SCPINYYSRTEKPNL--K--Y--------KYYPSVVE-LASNCHILVVACPLT 206 (313)
Q Consensus 142 l~g~~igiiG~-G~iG~~iA~~l~~~-G~~V~~~~~~~~~~~--~--~--------~~~~~l~e-~~~~aDvV~~~lp~~ 206 (313)
-..++|+|+|. |.+|+.+.+.|... +++|..+.+...... . . ....+++. .++++|+|++++|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 45568999997 89999999999877 678877654332110 0 0 00112222 247899999999853
Q ss_pred hhhhcccCHHHHhccCCCcEEEEcCCCccccHHHH
Q 021388 207 EETRHIINREVIDALGPKGVLINIGRGPHVDEREL 241 (313)
Q Consensus 207 ~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al 241 (313)
...++...|+.|..+||.|..-..+.++.
T Consensus 116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~ 144 (381)
T PLN02968 116 ------TTQEIIKALPKDLKIVDLSADFRLRDIAE 144 (381)
T ss_pred ------HHHHHHHHHhCCCEEEEcCchhccCCccc
Confidence 23445555667899999996655555443
No 286
>PRK06270 homoserine dehydrogenase; Provisional
Probab=96.07 E-value=0.04 Score=52.31 Aligned_cols=107 Identities=18% Similarity=0.177 Sum_probs=66.7
Q ss_pred CEEEEEcCChHHHHHHHHHHhC----------CCCEE-EecCCCC--Ccc--------------c-cc------cCCCHH
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAF----------SCPIN-YYSRTEK--PNL--------------K-YK------YYPSVV 190 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~----------G~~V~-~~~~~~~--~~~--------------~-~~------~~~~l~ 190 (313)
.+|||+|+|.||+.+++.+... +++|. +.|++.. ... + .. ...+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 3799999999999999998754 45654 4464321 000 0 00 123778
Q ss_pred HHhh--cCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcc-ccHHHHHHHHHhCCee
Q 021388 191 ELAS--NCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH-VDERELVSALVEGRLG 251 (313)
Q Consensus 191 e~~~--~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~-vd~~al~~al~~~~l~ 251 (313)
+++. +.|+|+.++|...++...--.-....|+.|.-+|-...+.+ ...++|.++.++....
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~ 146 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVR 146 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCE
Confidence 8874 68999999986544322211223566777877776544443 3457788888777664
No 287
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=96.00 E-value=0.013 Score=57.48 Aligned_cols=119 Identities=22% Similarity=0.307 Sum_probs=76.7
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc---------cccccC--CCHHHHhhcCCEEEEecCCChhhh
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN---------LKYKYY--PSVVELASNCHILVVACPLTEETR 210 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~---------~~~~~~--~~l~e~~~~aDvV~~~lp~~~~t~ 210 (313)
+.+++|.|+|+|.-|.++|+.|+..|++|.++|.++... .+.... .-..+....+|+|+.. |.-+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence 459999999999999999999999999999999766541 111111 1112567889999876 2222111
Q ss_pred c-----------ccC-HHHHhcc-CCCcEE-EEcCCCccccHHHHHHHHHhCC--------eeEEEecCCCCC
Q 021388 211 H-----------IIN-REVIDAL-GPKGVL-INIGRGPHVDERELVSALVEGR--------LGGAGLDVFENE 261 (313)
Q Consensus 211 ~-----------li~-~~~l~~m-k~ga~l-In~~rg~~vd~~al~~al~~~~--------l~ga~lDV~~~E 261 (313)
. ++. -+++... ++..++ |--+.|....+.-+...|++.. |...++|+.+.+
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~ 156 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA 156 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc
Confidence 1 222 2334443 234455 5555688777777777776644 566678888763
No 288
>PRK12862 malic enzyme; Reviewed
Probab=96.00 E-value=0.23 Score=52.06 Aligned_cols=158 Identities=11% Similarity=0.108 Sum_probs=108.3
Q ss_pred CcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCC-
Q 021388 90 GVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC- 168 (313)
Q Consensus 90 gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~- 168 (313)
+|++.|.. .++ +|=.+++-+++.+|-. +..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 161 ~ip~f~DD-~~G--Ta~v~la~l~~a~~~~-------------------~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 218 (763)
T PRK12862 161 KIPVFHDD-QHG--TAIIVAAALLNGLKLV-------------------GKDIEDVKLVASGAGAAALACLDLLVSLGVK 218 (763)
T ss_pred CCceEecC-ccc--HHHHHHHHHHHHHHHh-------------------CCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence 69999984 433 5556777888887733 456888999999999999999999999998
Q ss_pred --CEEEecCCCC----Cc---cc-----c--ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388 169 --PINYYSRTEK----PN---LK-----Y--KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 169 --~V~~~~~~~~----~~---~~-----~--~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~r 232 (313)
+++.+|+..- .. .. + ....+|.|+++.+|+++-. . +.++++++.++.|.+.+++.=.|.
T Consensus 219 ~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~~~~~l~e~~~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifalsN 293 (763)
T PRK12862 219 RENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGL-S----AAGVLKPEMVKKMAPRPLIFALAN 293 (763)
T ss_pred cccEEEEcCCCeeeCCCCccccHHHHHHhhhcccCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEeCCC
Confidence 6888885421 10 10 1 1235799999999988653 2 247899999999999999999988
Q ss_pred CccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCC
Q 021388 233 GPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSG 283 (313)
Q Consensus 233 g~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~ 283 (313)
...--..+.+.....+.+.+.+ .... -=|..|+++-|=++-.
T Consensus 294 P~~E~~p~~a~~~~~~~i~atG-----rs~~----p~Q~NN~~~FPgi~~g 335 (763)
T PRK12862 294 PTPEILPEEARAVRPDAIIATG-----RSDY----PNQVNNVLCFPYIFRG 335 (763)
T ss_pred CcccCCHHHHHHhcCCEEEEEC-----CcCC----CCcccceeeccchhhh
Confidence 7752222222333334455333 1111 2357788888876543
No 289
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.98 E-value=0.059 Score=50.32 Aligned_cols=90 Identities=18% Similarity=0.142 Sum_probs=62.0
Q ss_pred cCCCEEEEEcCC---hHHHHHHHHHHhCCCCEEEecCCCC-Cc---------ccc--ccCCCHHHHhhcCCEEEEecCCC
Q 021388 142 FTGKTVGIIGLG---RIGMAVAKRAEAFSCPINYYSRTEK-PN---------LKY--KYYPSVVELASNCHILVVACPLT 206 (313)
Q Consensus 142 l~g~~igiiG~G---~iG~~iA~~l~~~G~~V~~~~~~~~-~~---------~~~--~~~~~l~e~~~~aDvV~~~lp~~ 206 (313)
+.|.+|+++|-| ++.++++..+..+|++|.+..|..- .. .|. ....++++.++.+|+|..---..
T Consensus 148 l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~~ 227 (301)
T TIGR00670 148 LDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQK 227 (301)
T ss_pred CCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCccc
Confidence 789999999995 9999999999999999998877543 11 121 23578999999999987732110
Q ss_pred h------h-----hhcccCHHHHhccCCCcEEEEcC
Q 021388 207 E------E-----TRHIINREVIDALGPKGVLINIG 231 (313)
Q Consensus 207 ~------~-----t~~li~~~~l~~mk~ga~lIn~~ 231 (313)
+ + ...-++++.++.++++++|.-+.
T Consensus 228 er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHcl 263 (301)
T TIGR00670 228 ERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPL 263 (301)
T ss_pred cccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCC
Confidence 0 0 01234566666677776666443
No 290
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=95.98 E-value=0.015 Score=55.74 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=44.3
Q ss_pred CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc--c-----ccCC---CHHHHhhcCCEEEE
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK--Y-----KYYP---SVVELASNCHILVV 201 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~--~-----~~~~---~l~e~~~~aDvV~~ 201 (313)
.++|||||-|..|+.++..++.+|++|.++|+.+..... + .... .+.++++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 378999999999999999999999999999987654221 0 0112 36667888998754
No 291
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.96 E-value=0.0084 Score=47.19 Aligned_cols=80 Identities=20% Similarity=0.192 Sum_probs=52.1
Q ss_pred EEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----ccccc----CCC---HHH-HhhcCCEEEEecCCChhhhccc
Q 021388 147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKY----YPS---VVE-LASNCHILVVACPLTEETRHII 213 (313)
Q Consensus 147 igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~~---l~e-~~~~aDvV~~~lp~~~~t~~li 213 (313)
|.|+|+|.+|+.+++.|+..+.+|.+.+++++.. .+... ..+ +++ -+.++|.|+++.+....+. .
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~--~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENL--L 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHH--H
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHH--H
Confidence 5699999999999999999777899999876531 12111 122 232 2678999999988554433 2
Q ss_pred CHHHHhccCCCcEEE
Q 021388 214 NREVIDALGPKGVLI 228 (313)
Q Consensus 214 ~~~~l~~mk~ga~lI 228 (313)
-...+..+.+...++
T Consensus 79 ~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 79 IALLARELNPDIRII 93 (116)
T ss_dssp HHHHHHHHTTTSEEE
T ss_pred HHHHHHHHCCCCeEE
Confidence 244555555555544
No 292
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=95.93 E-value=0.027 Score=52.01 Aligned_cols=104 Identities=21% Similarity=0.253 Sum_probs=68.0
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcccc----c------cCCCHHHH--hhcCCEEEEecCCCh
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLKY----K------YYPSVVEL--ASNCHILVVACPLTE 207 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~~----~------~~~~l~e~--~~~aDvV~~~lp~~~ 207 (313)
...|+++.|+|.|..+++++..|+..|+ +|.+++|+.++.... . ......++ ..++|+|+.++|..-
T Consensus 123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm 202 (283)
T COG0169 123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGM 202 (283)
T ss_pred ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCC
Confidence 4678999999999999999999999996 699999987642210 0 01112221 226999999998654
Q ss_pred hhh--c-ccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhC
Q 021388 208 ETR--H-IINREVIDALGPKGVLINIGRGPHVDERELVSALVEG 248 (313)
Q Consensus 208 ~t~--~-li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~ 248 (313)
.-. . .++ ...++++.++.|+-=.+. ++.-|..|=+.|
T Consensus 203 ~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G 242 (283)
T COG0169 203 AGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG 242 (283)
T ss_pred CCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence 332 1 233 456778888888765543 333343333334
No 293
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=95.93 E-value=0.027 Score=53.47 Aligned_cols=62 Identities=23% Similarity=0.203 Sum_probs=42.4
Q ss_pred CEEEEEcCChHHHHHHHHHHh-CCCCEEE-ecCCCCCc------------------------cccccCCCHHHHhhcCCE
Q 021388 145 KTVGIIGLGRIGMAVAKRAEA-FSCPINY-YSRTEKPN------------------------LKYKYYPSVVELASNCHI 198 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~-~G~~V~~-~~~~~~~~------------------------~~~~~~~~l~e~~~~aDv 198 (313)
.+|||+|+|.||+.+++.+.. -++++.+ .|+.++.. .+.....++++++..+|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 379999999999999998875 4677654 44332100 011123457788888999
Q ss_pred EEEecCCC
Q 021388 199 LVVACPLT 206 (313)
Q Consensus 199 V~~~lp~~ 206 (313)
|+.|.|..
T Consensus 82 VIdaT~~~ 89 (341)
T PRK04207 82 VVDATPGG 89 (341)
T ss_pred EEECCCch
Confidence 99998743
No 294
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=95.91 E-value=0.025 Score=53.73 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=54.0
Q ss_pred CEEEEEcC-ChHHHHHHHHHHhC-CCCEEE-ecCCCCCc-cc-----cc-----cCCCHHH-HhhcCCEEEEecCCChhh
Q 021388 145 KTVGIIGL-GRIGMAVAKRAEAF-SCPINY-YSRTEKPN-LK-----YK-----YYPSVVE-LASNCHILVVACPLTEET 209 (313)
Q Consensus 145 ~~igiiG~-G~iG~~iA~~l~~~-G~~V~~-~~~~~~~~-~~-----~~-----~~~~l~e-~~~~aDvV~~~lp~~~~t 209 (313)
++|+|+|. |.+|+.+++.|... ++++.. .++..... .. .. .+.++++ ...++|+|++|+|...+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~- 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS- 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-
Confidence 68999996 99999999999876 667654 55432211 00 10 1222322 45789999999995432
Q ss_pred hcccCHHHHhccCCCcEEEEcCCCccc
Q 021388 210 RHIINREVIDALGPKGVLINIGRGPHV 236 (313)
Q Consensus 210 ~~li~~~~l~~mk~ga~lIn~~rg~~v 236 (313)
..+ ....++.|..+||.|-.=-.
T Consensus 82 ~~~----v~~a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 82 MDL----APQLLEAGVKVIDLSADFRL 104 (343)
T ss_pred HHH----HHHHHhCCCEEEECCcccCC
Confidence 212 11223578999999844333
No 295
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=95.90 E-value=0.15 Score=48.34 Aligned_cols=91 Identities=8% Similarity=0.038 Sum_probs=63.6
Q ss_pred ccCCCEEEEEcCC--hHHHHHHHHHHhCCCCEEEecCCCCCc--------------cc--cccCCCHHHHhhcCCEEEEe
Q 021388 141 KFTGKTVGIIGLG--RIGMAVAKRAEAFSCPINYYSRTEKPN--------------LK--YKYYPSVVELASNCHILVVA 202 (313)
Q Consensus 141 ~l~g~~igiiG~G--~iG~~iA~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~e~~~~aDvV~~~ 202 (313)
.+.|++|++||=+ ++.++++..+..+|++|.+..|..-.. .+ +....++++.++++|+|..-
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 3788999999986 688999999999999999887653211 12 22357899999999999874
Q ss_pred c----CCC-h--hh------hcccCHHHHhcc-CCCcEEEEcC
Q 021388 203 C----PLT-E--ET------RHIINREVIDAL-GPKGVLINIG 231 (313)
Q Consensus 203 l----p~~-~--~t------~~li~~~~l~~m-k~ga~lIn~~ 231 (313)
. ... + .. ...++++.++.. |++++|.-+.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 3 100 0 01 123567777775 6778777665
No 296
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.85 E-value=0.006 Score=50.45 Aligned_cols=60 Identities=20% Similarity=0.208 Sum_probs=44.7
Q ss_pred CEEEEEcC-ChHHHHHHHHHHhCCC--CEEEecCCCCCccc---------------cccCCCHHHHhhcCCEEEEecC
Q 021388 145 KTVGIIGL-GRIGMAVAKRAEAFSC--PINYYSRTEKPNLK---------------YKYYPSVVELASNCHILVVACP 204 (313)
Q Consensus 145 ~~igiiG~-G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~---------------~~~~~~l~e~~~~aDvV~~~lp 204 (313)
.+|+|||. |.+|..+|-.|...+. ++..+|+..+...+ .....+..+.+++||+|+++.-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 48999999 9999999999986554 69999988543221 0112245677899999999873
No 297
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.80 E-value=0.16 Score=47.59 Aligned_cols=136 Identities=18% Similarity=0.228 Sum_probs=84.6
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC------------ccc----cccCCCHHHHhhcCCEEEEecCCChh
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP------------NLK----YKYYPSVVELASNCHILVVACPLTEE 208 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~------------~~~----~~~~~~l~e~~~~aDvV~~~lp~~~~ 208 (313)
++|.|+|.|.||.-++.+|...|..|..+.|.+.. ..+ ......-.+.+..+|+|++++-.. +
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~-q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY-Q 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEeccc-c
Confidence 58999999999999999999999778888776630 011 011122335566899999998643 3
Q ss_pred hhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCC--cccCCCceEEccCCCCCc
Q 021388 209 TRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE--ELFGLENVVLMPHVGSGT 284 (313)
Q Consensus 209 t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~--~L~~~pnv~lTPH~a~~t 284 (313)
+...+ +.+.+.+++.+.++-.--| +=..+.+.+.....++.+ ++..+...-..+. .......+.+.+..++..
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il~-G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVLG-GVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEEE-EEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 44444 6677888888877755444 233445666666554542 4444322221221 244466777777766555
No 298
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.77 E-value=0.03 Score=50.53 Aligned_cols=37 Identities=22% Similarity=0.318 Sum_probs=32.2
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT 176 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~ 176 (313)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|..
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 35899999999999999999999999998 47777753
No 299
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.72 E-value=0.045 Score=49.82 Aligned_cols=97 Identities=22% Similarity=0.198 Sum_probs=63.6
Q ss_pred cccccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC-----------CccccccCCCHHHHhhcCCEEEEecCC
Q 021388 138 LTTKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK-----------PNLKYKYYPSVVELASNCHILVVACPL 205 (313)
Q Consensus 138 ~~~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~-----------~~~~~~~~~~l~e~~~~aDvV~~~lp~ 205 (313)
.|.+++..+++|+|+ |.||..+|+.|.+.+.+....-|... ...+.....+++....+.|+++-....
T Consensus 161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs~ 240 (351)
T COG5322 161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVASM 240 (351)
T ss_pred hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEeec
Confidence 578899999999997 89999999999998886554433221 111223334555545555554443322
Q ss_pred ChhhhcccCHHHHhccCCCcEEEEcCCCccccHH
Q 021388 206 TEETRHIINREVIDALGPKGVLINIGRGPHVDER 239 (313)
Q Consensus 206 ~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~ 239 (313)
. +-.+|+.+ .+|||+++||-++..=+|+.
T Consensus 241 ~--~g~~I~pq---~lkpg~~ivD~g~P~dvd~~ 269 (351)
T COG5322 241 P--KGVEIFPQ---HLKPGCLIVDGGYPKDVDTS 269 (351)
T ss_pred C--CCceechh---hccCCeEEEcCCcCcccccc
Confidence 2 23345554 46899999999998766654
No 300
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.70 E-value=0.027 Score=51.01 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=32.0
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSR 175 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~ 175 (313)
..|.+++|.|||+|.+|..+++.|...|. ++.++|.
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~ 64 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDF 64 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 46999999999999999999999999998 5777764
No 301
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.70 E-value=0.074 Score=52.06 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=68.7
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc---------ccccC--CCHHHHhhc-CCEEEEecCCChh
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL---------KYKYY--PSVVELASN-CHILVVACPLTEE 208 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~---------~~~~~--~~l~e~~~~-aDvV~~~lp~~~~ 208 (313)
++.|+++.|+|.|.+|.++|+.|+..|++|.++|+...... +.... ....+++.. .|+|+..-...+.
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence 36789999999999999999999999999999997542211 11111 122334444 8988775421111
Q ss_pred h----------hcccCH-HHHhccCC-CcEEEEcCCCccccHHHHHHHHHhCC
Q 021388 209 T----------RHIINR-EVIDALGP-KGVLINIGRGPHVDERELVSALVEGR 249 (313)
Q Consensus 209 t----------~~li~~-~~l~~mk~-ga~lIn~~rg~~vd~~al~~al~~~~ 249 (313)
. ..++.+ +++..+.+ ..+-|--+.|......-+...|+...
T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g 134 (447)
T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGG 134 (447)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence 1 112333 23333333 34556666788888888888887644
No 302
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.68 E-value=0.021 Score=61.40 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=45.4
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhC-CCC-------------EEEecCCCCCcc-------c---ccc-CCCHHHH---hh
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAF-SCP-------------INYYSRTEKPNL-------K---YKY-YPSVVEL---AS 194 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~-G~~-------------V~~~~~~~~~~~-------~---~~~-~~~l~e~---~~ 194 (313)
..++|+|||.|.||+..|+.|... +.+ |.+.|++.+... + ... ..+.+++ ++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 467999999999999999999754 334 788887764211 1 111 3344444 46
Q ss_pred cCCEEEEecCCC
Q 021388 195 NCHILVVACPLT 206 (313)
Q Consensus 195 ~aDvV~~~lp~~ 206 (313)
++|+|++++|..
T Consensus 648 ~~DaVIsalP~~ 659 (1042)
T PLN02819 648 QVDVVISLLPAS 659 (1042)
T ss_pred CCCEEEECCCch
Confidence 899999999964
No 303
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.68 E-value=0.3 Score=47.22 Aligned_cols=179 Identities=14% Similarity=0.158 Sum_probs=117.2
Q ss_pred cCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCC
Q 021388 89 KGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC 168 (313)
Q Consensus 89 ~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~ 168 (313)
..|+|.|..= + -+|=.+++-+++.+|-. +..|...+|.+.|.|.-|-++++.+++.|+
T Consensus 166 ~~IPvFhDDq-q--GTaiv~lA~llnalk~~-------------------gk~l~d~kiv~~GAGAAgiaia~~l~~~g~ 223 (432)
T COG0281 166 MNIPVFHDDQ-Q--GTAIVTLAALLNALKLT-------------------GKKLKDQKIVINGAGAAGIAIADLLVAAGV 223 (432)
T ss_pred CCCCcccccc-c--HHHHHHHHHHHHHHHHh-------------------CCCccceEEEEeCCcHHHHHHHHHHHHhCC
Confidence 4688888753 2 35556777788887633 567999999999999999999999999998
Q ss_pred ---CEEEecCCCC----Ccc--cccc-----------CCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEE
Q 021388 169 ---PINYYSRTEK----PNL--KYKY-----------YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI 228 (313)
Q Consensus 169 ---~V~~~~~~~~----~~~--~~~~-----------~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lI 228 (313)
+|+.+|+..- ... ..++ ... ++.+..+|+++-+- ..+++.++.++.|.+.+++.
T Consensus 224 ~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~~Ma~~PiIf 297 (432)
T COG0281 224 KEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVS-----GVGAFTEEMVKEMAKHPIIF 297 (432)
T ss_pred CcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcC-----CCCCcCHHHHHHhccCCEEe
Confidence 4888887532 110 0000 011 44678899876542 22889999999999999998
Q ss_pred EcCCCccccHHHHHHHHHhC-CeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHH-----HHHHHHHHHHHHHH
Q 021388 229 NIGRGPHVDERELVSALVEG-RLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETR-----KTMADLVLGNLEAH 302 (313)
Q Consensus 229 n~~rg~~vd~~al~~al~~~-~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~-----~~~~~~~~~nl~~~ 302 (313)
=.+.-..--....+....+| .+-+ + .-|..+. |..|+++-|-+.-..-+++ +.|.--+++-|.++
T Consensus 298 alaNP~pEi~Pe~a~~~~~~aaiva-----T-Grsd~Pn---QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~ 368 (432)
T COG0281 298 ALANPTPEITPEDAKEWGDGAAIVA-----T-GRSDYPN---QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADL 368 (432)
T ss_pred ecCCCCccCCHHHHhhcCCCCEEEE-----e-CCCCCcc---cccceeEcchhhhhhHhhccccCCHHHHHHHHHHHHhh
Confidence 88876642222233333333 3432 2 2222111 8999999999876544333 44555566666666
Q ss_pred Hc
Q 021388 303 FL 304 (313)
Q Consensus 303 ~~ 304 (313)
..
T Consensus 369 ~~ 370 (432)
T COG0281 369 AR 370 (432)
T ss_pred cc
Confidence 43
No 304
>PLN02527 aspartate carbamoyltransferase
Probab=95.67 E-value=0.1 Score=48.80 Aligned_cols=89 Identities=20% Similarity=0.316 Sum_probs=58.9
Q ss_pred cCCCEEEEEcCC---hHHHHHHHHHHhC-CCCEEEecCCCCCc----------cc--cccCCCHHHHhhcCCEEEEecCC
Q 021388 142 FTGKTVGIIGLG---RIGMAVAKRAEAF-SCPINYYSRTEKPN----------LK--YKYYPSVVELASNCHILVVACPL 205 (313)
Q Consensus 142 l~g~~igiiG~G---~iG~~iA~~l~~~-G~~V~~~~~~~~~~----------~~--~~~~~~l~e~~~~aDvV~~~lp~ 205 (313)
+.|.+|+++|-+ ++.++++..+..+ |++|.+..|..-.. .+ .....++++.++.+|+|....-.
T Consensus 149 l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~q 228 (306)
T PLN02527 149 LDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRIQ 228 (306)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCcc
Confidence 788999999976 6889999998887 99998887644211 01 12357899999999999884321
Q ss_pred Chh------------hhcccCHHHHhccCCCcEEEEc
Q 021388 206 TEE------------TRHIINREVIDALGPKGVLINI 230 (313)
Q Consensus 206 ~~~------------t~~li~~~~l~~mk~ga~lIn~ 230 (313)
.+. ....++++.++.++++++|.-+
T Consensus 229 ~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHc 265 (306)
T PLN02527 229 RERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHP 265 (306)
T ss_pred hhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECC
Confidence 000 0123455556666666655544
No 305
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.66 E-value=0.055 Score=53.69 Aligned_cols=99 Identities=13% Similarity=0.198 Sum_probs=68.7
Q ss_pred ccCCCEEEEEcC----------ChHHHHHHHHHHhCCCCEEEecCCCCCccc---------------------------c
Q 021388 141 KFTGKTVGIIGL----------GRIGMAVAKRAEAFSCPINYYSRTEKPNLK---------------------------Y 183 (313)
Q Consensus 141 ~l~g~~igiiG~----------G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~---------------------------~ 183 (313)
.+.|++|+|+|+ .+-...+++.|...|.+|.+||+....... .
T Consensus 321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (473)
T PLN02353 321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV 400 (473)
T ss_pred ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence 478999999998 557889999999999999999997432100 1
Q ss_pred ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHH
Q 021388 184 KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELV 242 (313)
Q Consensus 184 ~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~ 242 (313)
....++.+.++.+|+|+++....+ -+.+--+.....|++..+++|. |+ +.|.+.+.
T Consensus 401 ~~~~~~~~a~~~aD~vvi~t~~~e-f~~l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~ 456 (473)
T PLN02353 401 SVVWDAYEATKGAHGICILTEWDE-FKTLDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR 456 (473)
T ss_pred eeeCCHHHHhcCCCEEEECCCChH-hcccCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence 123456788999999999987543 2222223445668766689994 44 34655543
No 306
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.65 E-value=0.059 Score=53.12 Aligned_cols=109 Identities=23% Similarity=0.219 Sum_probs=68.2
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCHHHHhhcCCEEEEec--CCC-h----h
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVVAC--PLT-E----E 208 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l~e~~~~aDvV~~~l--p~~-~----~ 208 (313)
++.|++|.|+|+|..|.++|+.|+..|++|.++|...... .+......-.+-+.++|+|+..= |.+ + .
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~ 85 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV 85 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence 3678999999999999999999999999999999654311 12221110112346799887532 211 1 1
Q ss_pred h---hc----ccCH-HHHhc-c-----CCCcEEEEcCCCccccHHHHHHHHHhCC
Q 021388 209 T---RH----IINR-EVIDA-L-----GPKGVLINIGRGPHVDERELVSALVEGR 249 (313)
Q Consensus 209 t---~~----li~~-~~l~~-m-----k~ga~lIn~~rg~~vd~~al~~al~~~~ 249 (313)
. +. ++.+ +.+.. + +...+-|.-+.|.....+-+...|+...
T Consensus 86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g 140 (460)
T PRK01390 86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAG 140 (460)
T ss_pred HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence 1 11 1322 22222 2 2334557777899988888888887644
No 307
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.65 E-value=0.029 Score=55.96 Aligned_cols=110 Identities=17% Similarity=0.197 Sum_probs=69.4
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc---------ccccC--CCHHHHhhcCCEEEEe--cCCC--
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL---------KYKYY--PSVVELASNCHILVVA--CPLT-- 206 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~---------~~~~~--~~l~e~~~~aDvV~~~--lp~~-- 206 (313)
+.+++|.|+|+|..|.++|+.|+..|++|.++|....... +.... ....+.+..+|+|+.. +|.+
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~ 84 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEA 84 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCccc
Confidence 5688999999999999999999999999999997543211 11111 1123455689998886 3432
Q ss_pred ---hh-------hhcccCH-HHHh-cc--------CCCcEEEEcCCCccccHHHHHHHHHhCCee
Q 021388 207 ---EE-------TRHIINR-EVID-AL--------GPKGVLINIGRGPHVDERELVSALVEGRLG 251 (313)
Q Consensus 207 ---~~-------t~~li~~-~~l~-~m--------k~ga~lIn~~rg~~vd~~al~~al~~~~l~ 251 (313)
|. ...++.+ +.+. .+ ++..+-|--+-|......-+.+.|++....
T Consensus 85 ~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~ 149 (498)
T PRK02006 85 ALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKK 149 (498)
T ss_pred ccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 21 1112221 2221 12 123455666678888888888888765544
No 308
>PRK12861 malic enzyme; Reviewed
Probab=95.65 E-value=0.43 Score=49.95 Aligned_cols=157 Identities=11% Similarity=0.084 Sum_probs=107.7
Q ss_pred CcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhCCC-
Q 021388 90 GVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC- 168 (313)
Q Consensus 90 gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~- 168 (313)
.|++.|.. .++ +|=.+++-+++.+|-. +..+...+|.|.|.|.-|-.+++.+...|.
T Consensus 157 ~ipvf~DD-~qG--Ta~v~lA~llnal~~~-------------------gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~ 214 (764)
T PRK12861 157 KIPVFHDD-QHG--TAITVSAAFINGLKVV-------------------GKSIKEVKVVTSGAGAAALACLDLLVDLGLP 214 (764)
T ss_pred CCCeeccc-cch--HHHHHHHHHHHHHHHh-------------------CCChhHcEEEEECHhHHHHHHHHHHHHcCCC
Confidence 79999984 444 5556778888887733 456888999999999999999999999998
Q ss_pred --CEEEecCCCC----C-c--cc-----c--ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCC
Q 021388 169 --PINYYSRTEK----P-N--LK-----Y--KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 169 --~V~~~~~~~~----~-~--~~-----~--~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~r 232 (313)
+++.+|+..- . . .. + ....+|.|+++.+|+++- +. ..++++++.+..|.+.+++.=.|.
T Consensus 215 ~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~~~~~L~eai~~advliG-~S----~~g~ft~e~v~~Ma~~PIIFaLsN 289 (764)
T PRK12861 215 VENIWVTDIEGVVYRGRTTLMDPDKERFAQETDARTLAEVIGGADVFLG-LS----AGGVLKAEMLKAMAARPLILALAN 289 (764)
T ss_pred hhhEEEEcCCCeeeCCCcccCCHHHHHHHhhcCCCCHHHHHhcCCEEEE-cC----CCCCCCHHHHHHhccCCEEEECCC
Confidence 6888885431 1 0 10 1 123589999999998754 33 247899999999999999999888
Q ss_pred CccccHHHHHHHHHhCC-eeEEEecCCCCCCCCCCcccCCCceEEccCCCCC
Q 021388 233 GPHVDERELVSALVEGR-LGGAGLDVFENEPHVPEELFGLENVVLMPHVGSG 283 (313)
Q Consensus 233 g~~vd~~al~~al~~~~-l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~ 283 (313)
...--..+.+.+ ..|+ +. +. ... +.-=|..|+++-|=++-.
T Consensus 290 PtpE~~pe~a~~-~~g~aiv--aT----Grs---~~pnQ~NN~l~FPgi~~G 331 (764)
T PRK12861 290 PTPEIFPELAHA-TRDDVVI--AT----GRS---DYPNQVNNVLCFPYIFRG 331 (764)
T ss_pred CCccCCHHHHHh-cCCCEEE--Ee----CCc---CCCCccceeeecchhhHH
Confidence 764211122222 3344 33 22 111 112367889999977543
No 309
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.62 E-value=0.059 Score=47.69 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=33.2
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRT 176 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~ 176 (313)
..|.+++|.|||+|.+|..+|+.|...|.. +..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 458999999999999999999999999985 8888765
No 310
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=95.60 E-value=0.12 Score=47.97 Aligned_cols=108 Identities=21% Similarity=0.185 Sum_probs=73.1
Q ss_pred CCEEEEEcC-ChHHHHHHHHHHhCCCC-EEEecCC--CCCccccccCCCHHHHhhc--CCEEEEecCCChhhhcccCHHH
Q 021388 144 GKTVGIIGL-GRIGMAVAKRAEAFSCP-INYYSRT--EKPNLKYKYYPSVVELASN--CHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 144 g~~igiiG~-G~iG~~iA~~l~~~G~~-V~~~~~~--~~~~~~~~~~~~l~e~~~~--aDvV~~~lp~~~~t~~li~~~~ 217 (313)
..+|-|.|. |.+|+.+.+.|..+|++ ++..++. .....+...+.++.++-.. .|+.++++|.. .+...+ ++.
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~~~DlAvi~vp~~-~v~~~l-~e~ 85 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEATGANASVIYVPPP-FAADAI-LEA 85 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhccCCCEEEEEcCHH-HHHHHH-HHH
Confidence 457888887 78999999999999987 3345766 4455566778899999887 89999999932 333333 333
Q ss_pred HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEE
Q 021388 218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAG 254 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~ 254 (313)
.+.=-+.++++..+- +..++++|.+..+++.++-.+
T Consensus 86 ~~~gvk~avI~s~Gf-~~~~~~~l~~~a~~~girvlG 121 (291)
T PRK05678 86 IDAGIDLIVCITEGI-PVLDMLEVKAYLERKKTRLIG 121 (291)
T ss_pred HHCCCCEEEEECCCC-CHHHHHHHHHHHHHcCCEEEC
Confidence 332122344444443 345556899999998877443
No 311
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.57 E-value=0.037 Score=51.18 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=45.9
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcccc------------ccCCC---HHHHhhcCCEEEEecCC
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNLKY------------KYYPS---VVELASNCHILVVACPL 205 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~~------------~~~~~---l~e~~~~aDvV~~~lp~ 205 (313)
+.++++.|+|.|..|++++..|...|+ +|.+++|+.++.... ....+ +.+.+..+|+|+.++|.
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~ 204 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPM 204 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCC
Confidence 557899999999999999999999998 588999986532110 00011 23345667888877774
Q ss_pred C
Q 021388 206 T 206 (313)
Q Consensus 206 ~ 206 (313)
.
T Consensus 205 G 205 (283)
T PRK14027 205 G 205 (283)
T ss_pred C
Confidence 3
No 312
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=95.56 E-value=0.063 Score=51.03 Aligned_cols=106 Identities=13% Similarity=0.018 Sum_probs=69.6
Q ss_pred CEEEEEcCChHHHHHHHHHHhC--CCCEE-EecCCCCCcc------ccccCCCHHHHhhcCCEEEEecCCC-hhhhcccC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAF--SCPIN-YYSRTEKPNL------KYKYYPSVVELASNCHILVVACPLT-EETRHIIN 214 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~--G~~V~-~~~~~~~~~~------~~~~~~~l~e~~~~aDvV~~~lp~~-~~t~~li~ 214 (313)
.+|||||. .+|+..++.++.. ++++. ++|++.++.. +...+.++++++.+.|++++++|.+ +...|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~-- 80 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS-- 80 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH--
Confidence 58999999 6799999888765 46754 6787765322 3345789999999999999999843 222221
Q ss_pred HHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEE
Q 021388 215 REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGA 253 (313)
Q Consensus 215 ~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga 253 (313)
+-..+.|+.|.-++-=-=-..-+.++|+++.++.++...
T Consensus 81 e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 81 ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 223344555543333222224677888988888877633
No 313
>PRK10637 cysG siroheme synthase; Provisional
Probab=95.54 E-value=0.027 Score=55.63 Aligned_cols=90 Identities=12% Similarity=0.172 Sum_probs=58.7
Q ss_pred ccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------c-ccc-CCC-HHHHhhcCCEEEEecCCCh
Q 021388 137 KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------K-YKY-YPS-VVELASNCHILVVACPLTE 207 (313)
Q Consensus 137 ~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~-~~~-~~~-l~e~~~~aDvV~~~lp~~~ 207 (313)
|...++.|++|.|||-|.++..=++.|..+|++|.++.+.-.+.. + ... ..+ ..+.+..+++|+.++...+
T Consensus 5 P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~ 84 (457)
T PRK10637 5 PIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA 84 (457)
T ss_pred ceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH
Confidence 455689999999999999999988999999999999987543221 0 000 001 1345678888877765443
Q ss_pred hhhcccCHHHHhccCCCcEEEEcC
Q 021388 208 ETRHIINREVIDALGPKGVLINIG 231 (313)
Q Consensus 208 ~t~~li~~~~l~~mk~ga~lIn~~ 231 (313)
+|++.....+...+++|++
T Consensus 85 -----~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 85 -----VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred -----HhHHHHHHHHHcCcEEEEC
Confidence 3444444444444555543
No 314
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.53 E-value=0.02 Score=57.07 Aligned_cols=108 Identities=15% Similarity=0.162 Sum_probs=68.3
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccC--CCHHHHhhcCCEEEEecCCChhhh----
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYY--PSVVELASNCHILVVACPLTEETR---- 210 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~--~~l~e~~~~aDvV~~~lp~~~~t~---- 210 (313)
+.|+++.|+|+|.+|.+.++.|+..|++|.++|..+... .+.... ....+.+.++|+|+.+-...+...
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~ 89 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA 89 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence 578999999999999999999999999999999654311 122111 123355678998877643222211
Q ss_pred ------cccCHHHHh-cc-------CC-CcEEEEcCCCccccHHHHHHHHHhCC
Q 021388 211 ------HIINREVID-AL-------GP-KGVLINIGRGPHVDERELVSALVEGR 249 (313)
Q Consensus 211 ------~li~~~~l~-~m-------k~-ga~lIn~~rg~~vd~~al~~al~~~~ 249 (313)
.++++-.+. .+ ++ ..+-|--+-|+.....-+.+.|+...
T Consensus 90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g 143 (488)
T PRK03369 90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAG 143 (488)
T ss_pred HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence 122222221 11 12 23446666788888888888887644
No 315
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=95.52 E-value=0.079 Score=49.53 Aligned_cols=90 Identities=10% Similarity=0.119 Sum_probs=61.3
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc-----------cc--cccCCCHHHHhhcCCEEEEec----
Q 021388 142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN-----------LK--YKYYPSVVELASNCHILVVAC---- 203 (313)
Q Consensus 142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----------~~--~~~~~~l~e~~~~aDvV~~~l---- 203 (313)
+.|.+|+++|- +++.++++..+..+|++|....|..-.. .| .....++++.++++|+|..-.
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~ 229 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSM 229 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccc
Confidence 77899999998 7899999999999999999887654221 11 223578999999999998742
Q ss_pred CCCh---h-----hhcccCHHHHhccCCCcEEEEcC
Q 021388 204 PLTE---E-----TRHIINREVIDALGPKGVLINIG 231 (313)
Q Consensus 204 p~~~---~-----t~~li~~~~l~~mk~ga~lIn~~ 231 (313)
.... + ...-++++.++.+|++++|.-+.
T Consensus 230 ~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHpl 265 (304)
T PRK00779 230 GQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCL 265 (304)
T ss_pred ccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCC
Confidence 1100 0 11234556666666666655543
No 316
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=95.50 E-value=0.25 Score=46.19 Aligned_cols=90 Identities=11% Similarity=0.115 Sum_probs=61.3
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc--------------cc--cccCCCHHHHhhcCCEEEEecC
Q 021388 142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN--------------LK--YKYYPSVVELASNCHILVVACP 204 (313)
Q Consensus 142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~e~~~~aDvV~~~lp 204 (313)
+.|.+|+++|- +++-++++..+..+|++|.+..|..-.. .+ .....++++.++++|+|..-.-
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 78899999997 7888999999999999998887644211 11 1235789999999999987431
Q ss_pred C--C-h----h-----hhcccCHHHHhccCCCcEEEEcC
Q 021388 205 L--T-E----E-----TRHIINREVIDALGPKGVLINIG 231 (313)
Q Consensus 205 ~--~-~----~-----t~~li~~~~l~~mk~ga~lIn~~ 231 (313)
. . + + ....++++.++.+|++++|.-+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl 264 (304)
T TIGR00658 226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL 264 (304)
T ss_pred ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence 1 0 0 0 11234666666666666665544
No 317
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.49 E-value=0.0079 Score=57.85 Aligned_cols=79 Identities=14% Similarity=0.216 Sum_probs=49.4
Q ss_pred EEEEcCChHHHHHHHHHHhCC-C-CEEEecCCCCCcc---------ccc-------cCCCHHHHhhcCCEEEEecCCChh
Q 021388 147 VGIIGLGRIGMAVAKRAEAFS-C-PINYYSRTEKPNL---------KYK-------YYPSVVELASNCHILVVACPLTEE 208 (313)
Q Consensus 147 igiiG~G~iG~~iA~~l~~~G-~-~V~~~~~~~~~~~---------~~~-------~~~~l~e~~~~aDvV~~~lp~~~~ 208 (313)
|+|+|.|.+|+.+++.|...+ . +|.+.||+.++.. ... ...++.++++++|+|+.|+|.. .
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence 689999999999999998765 4 8999998876411 110 1124678899999999999733 1
Q ss_pred hhcccCHHHHhccCCCcEEEEc
Q 021388 209 TRHIINREVIDALGPKGVLINI 230 (313)
Q Consensus 209 t~~li~~~~l~~mk~ga~lIn~ 230 (313)
...+ .-..++.|.-.||+
T Consensus 80 ~~~v----~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 80 GEPV----ARACIEAGVHYVDT 97 (386)
T ss_dssp HHHH----HHHHHHHT-EEEES
T ss_pred hHHH----HHHHHHhCCCeecc
Confidence 1111 12223456667773
No 318
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.48 E-value=0.022 Score=58.19 Aligned_cols=87 Identities=23% Similarity=0.311 Sum_probs=60.0
Q ss_pred CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccc----cCCC---HHHH-hhcCCEEEEecCCChhhh
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYK----YYPS---VVEL-ASNCHILVVACPLTEETR 210 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~----~~~~---l~e~-~~~aDvV~~~lp~~~~t~ 210 (313)
..++.|+|+|++|+.+++.|...|.++.+.|.+++.. .+.. ..++ ++++ +++||.++.+++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 4579999999999999999999999999999887632 1211 1122 2222 678999999999776665
Q ss_pred cccCHHHHhccCCCcEEEEcCC
Q 021388 211 HIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 211 ~li~~~~l~~mk~ga~lIn~~r 232 (313)
.++ .....+.|...++--+|
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeC
Confidence 443 33445556655554433
No 319
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.46 E-value=0.076 Score=52.01 Aligned_cols=103 Identities=22% Similarity=0.248 Sum_probs=64.6
Q ss_pred CEEEEEcCChHHHHHHHHHHhC----------CCCE-EEecCCCCCccc-----cccCCCHHHHhh--cCCEEEEecCCC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAF----------SCPI-NYYSRTEKPNLK-----YKYYPSVVELAS--NCHILVVACPLT 206 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~----------G~~V-~~~~~~~~~~~~-----~~~~~~l~e~~~--~aDvV~~~lp~~ 206 (313)
.+|||+|+|.+|+.+++.+... +.+| .+++++.....+ .....++++++. +.|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 4799999999999999887532 3444 356766543221 234568889885 479999988653
Q ss_pred hhhhcccCHHHHhccCCCcEEEEcCCCcc-ccHHHHHHHHHhCCee
Q 021388 207 EETRHIINREVIDALGPKGVLINIGRGPH-VDERELVSALVEGRLG 251 (313)
Q Consensus 207 ~~t~~li~~~~l~~mk~ga~lIn~~rg~~-vd~~al~~al~~~~l~ 251 (313)
.... .-....|+.|.-+|-.--+.. ...+.|.++.++.+..
T Consensus 84 ~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~ 125 (426)
T PRK06349 84 EPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVD 125 (426)
T ss_pred hHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCc
Confidence 2222 223355667766664433222 2346788888777664
No 320
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=95.45 E-value=0.048 Score=41.85 Aligned_cols=61 Identities=21% Similarity=0.227 Sum_probs=42.8
Q ss_pred CEEEEEcCChHHHHHHHHHH-hCCCCE-EEecCCCCCc----cccccCCCHHHHhhc--CCEEEEecCC
Q 021388 145 KTVGIIGLGRIGMAVAKRAE-AFSCPI-NYYSRTEKPN----LKYKYYPSVVELASN--CHILVVACPL 205 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~-~~G~~V-~~~~~~~~~~----~~~~~~~~l~e~~~~--aDvV~~~lp~ 205 (313)
.++.|+|.|+.|++++.... ..|+++ .++|.++... .+...+.+++++.+. .|+.++++|.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~ 72 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPA 72 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-H
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCH
Confidence 57999999999999886553 667764 5667665532 233345577777766 9999999983
No 321
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.39 E-value=0.072 Score=45.62 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=28.0
Q ss_pred EEEEEcCChHHHHHHHHHHhCCCC-EEEecCCC
Q 021388 146 TVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTE 177 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~ 177 (313)
+|+|||+|.+|..+++.|...|.. +..+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999999999995 88887653
No 322
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=95.38 E-value=0.027 Score=56.72 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=34.7
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
.+.++++.|+|.|.+|++++..|...|++|.+++|+.+
T Consensus 376 ~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e 413 (529)
T PLN02520 376 PLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYE 413 (529)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 47789999999999999999999999999999998754
No 323
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=95.38 E-value=0.071 Score=49.91 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=47.0
Q ss_pred CEEEEEcCChHH-HHHHHHHHhCC--CC-EEEecCCCCCcc------cc-ccCCCHHHHhhc--CCEEEEecCCChh
Q 021388 145 KTVGIIGLGRIG-MAVAKRAEAFS--CP-INYYSRTEKPNL------KY-KYYPSVVELASN--CHILVVACPLTEE 208 (313)
Q Consensus 145 ~~igiiG~G~iG-~~iA~~l~~~G--~~-V~~~~~~~~~~~------~~-~~~~~l~e~~~~--aDvV~~~lp~~~~ 208 (313)
.++||||+|.++ +..+..++..+ ++ |.++|++++... +. ..+.+++++++. .|+|++++|..-+
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H 80 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH 80 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence 589999999776 45888888776 34 556788876422 22 357789999876 5899999996544
No 324
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.37 E-value=0.058 Score=51.91 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=33.2
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT 176 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~ 176 (313)
..+.+++|.|+|+|.+|..+++.|...|. ++..+|+.
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35899999999999999999999999998 58888865
No 325
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=95.37 E-value=0.022 Score=48.26 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=46.9
Q ss_pred EEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc---ccc-------cCCCHHHHhhcCCEEEEecCCCh
Q 021388 147 VGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL---KYK-------YYPSVVELASNCHILVVACPLTE 207 (313)
Q Consensus 147 igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~---~~~-------~~~~l~e~~~~aDvV~~~lp~~~ 207 (313)
|.|+|. |.+|+.+++.|...|++|.++.|++.+.. +.. ...++.+.++.+|+|+.+++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAEDSPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHHCTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcccccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 578884 99999999999999999999999876422 111 12245677889999999997543
No 326
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.34 E-value=0.11 Score=42.49 Aligned_cols=32 Identities=22% Similarity=0.302 Sum_probs=28.3
Q ss_pred EEEEEcCChHHHHHHHHHHhCCC-CEEEecCCC
Q 021388 146 TVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTE 177 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~ 177 (313)
+|.|+|+|.+|..+++.|...|. ++..+|...
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 47899999999999999999998 588888653
No 327
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=95.33 E-value=0.047 Score=51.87 Aligned_cols=37 Identities=30% Similarity=0.336 Sum_probs=33.5
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT 176 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~ 176 (313)
..|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45899999999999999999999999998 78888864
No 328
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=95.32 E-value=0.11 Score=49.18 Aligned_cols=91 Identities=12% Similarity=0.106 Sum_probs=62.6
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc--------------cc--cccCCCHHHHhhcCCEEEEec
Q 021388 141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN--------------LK--YKYYPSVVELASNCHILVVAC 203 (313)
Q Consensus 141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~e~~~~aDvV~~~l 203 (313)
.+.|.+|+++|= .++.++++..+..+|++|.+..|..-.. .+ +....++++.++.+|+|..-.
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~ 230 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDV 230 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcc
Confidence 488999999997 6788999999999999999887753211 01 223578999999999998833
Q ss_pred CC----Ch----h------hhcccCHHHHhccCCCcEEEEcC
Q 021388 204 PL----TE----E------TRHIINREVIDALGPKGVLINIG 231 (313)
Q Consensus 204 p~----~~----~------t~~li~~~~l~~mk~ga~lIn~~ 231 (313)
-. .+ + ...-++++.++.+|++++|.-+.
T Consensus 231 w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpL 272 (338)
T PRK02255 231 WYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCL 272 (338)
T ss_pred cHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCC
Confidence 11 00 0 01345666666666666666554
No 329
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.28 E-value=0.028 Score=56.89 Aligned_cols=82 Identities=15% Similarity=0.181 Sum_probs=55.5
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc----cCCC---HHH-HhhcCCEEEEecCCChhhhc
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK----YYPS---VVE-LASNCHILVVACPLTEETRH 211 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~----~~~~---l~e-~~~~aDvV~~~lp~~~~t~~ 211 (313)
.++-|+|+|++|+.+++.|+..|.+|.+.|.+++... +.. ...+ +++ -++++|.++++++.+.++..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 5789999999999999999999999999998765321 111 1122 222 25689999999987766655
Q ss_pred ccCHHHHhccCCCcEEE
Q 021388 212 IINREVIDALGPKGVLI 228 (313)
Q Consensus 212 li~~~~l~~mk~ga~lI 228 (313)
++.. . ..+.+...+|
T Consensus 498 iv~~-~-~~~~~~~~ii 512 (558)
T PRK10669 498 IVAS-A-REKRPDIEII 512 (558)
T ss_pred HHHH-H-HHHCCCCeEE
Confidence 5422 2 2234454444
No 330
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=95.25 E-value=0.24 Score=45.03 Aligned_cols=109 Identities=17% Similarity=0.231 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHhC----CC-------CEEE
Q 021388 104 VADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAF----SC-------PINY 172 (313)
Q Consensus 104 vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~~----G~-------~V~~ 172 (313)
+|=-+++-+|+.+|-. +..|...+|.|+|.|.-|-.+|+.+... |. +++.
T Consensus 4 TaaV~lAgll~Al~~~-------------------g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~l 64 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVT-------------------GKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWL 64 (255)
T ss_dssp HHHHHHHHHHHHHHHH-------------------TS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEE
T ss_pred hHHHHHHHHHHHHHHh-------------------CCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEE
Confidence 4556778888887744 4458899999999999999999999887 87 4888
Q ss_pred ecCCCC----C-c-cc-----------cccCCCHHHHhhcC--CEEEEecCCChhhhcccCHHHHhccCC---CcEEEEc
Q 021388 173 YSRTEK----P-N-LK-----------YKYYPSVVELASNC--HILVVACPLTEETRHIINREVIDALGP---KGVLINI 230 (313)
Q Consensus 173 ~~~~~~----~-~-~~-----------~~~~~~l~e~~~~a--DvV~~~lp~~~~t~~li~~~~l~~mk~---ga~lIn~ 230 (313)
+|+..- . . .. .....+|.|+++.+ |+++-+-- ..++++++.++.|.+ .+++.=.
T Consensus 65 vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~----~~g~ft~evv~~Ma~~~erPIIF~L 140 (255)
T PF03949_consen 65 VDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSG----QGGAFTEEVVRAMAKHNERPIIFPL 140 (255)
T ss_dssp EETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSS----STTSS-HHHHHHCHHHSSSEEEEE-
T ss_pred EeccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecC----CCCcCCHHHHHHHhccCCCCEEEEC
Confidence 886421 1 0 00 01124899999998 99875432 456899999999987 8999999
Q ss_pred CCCcc
Q 021388 231 GRGPH 235 (313)
Q Consensus 231 ~rg~~ 235 (313)
|.-..
T Consensus 141 SNPt~ 145 (255)
T PF03949_consen 141 SNPTP 145 (255)
T ss_dssp SSSCG
T ss_pred CCCCC
Confidence 98776
No 331
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.21 E-value=0.049 Score=50.79 Aligned_cols=85 Identities=21% Similarity=0.312 Sum_probs=55.7
Q ss_pred EEEEcCChHHHHHHHHHHhCC--CCEEEecCCCCCccc----------c----cc--CCCHHHHhhcCCEEEEecCCChh
Q 021388 147 VGIIGLGRIGMAVAKRAEAFS--CPINYYSRTEKPNLK----------Y----KY--YPSVVELASNCHILVVACPLTEE 208 (313)
Q Consensus 147 igiiG~G~iG~~iA~~l~~~G--~~V~~~~~~~~~~~~----------~----~~--~~~l~e~~~~aDvV~~~lp~~~~ 208 (313)
|+|||.|.+|..+|-.+...| .++..+|+..+...+ . .. ..+ .+.+++||+|+++......
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 589999999999999998888 469999987653221 0 00 123 4678999999999853221
Q ss_pred ---hhc--------ccC--HHHHhccCCCcEEEEcCC
Q 021388 209 ---TRH--------IIN--REVIDALGPKGVLINIGR 232 (313)
Q Consensus 209 ---t~~--------li~--~~~l~~mk~ga~lIn~~r 232 (313)
++. ++. ...+....|.+++|+++-
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 111 110 122333458899999883
No 332
>PRK08223 hypothetical protein; Validated
Probab=95.21 E-value=0.076 Score=49.16 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=31.7
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSR 175 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~ 175 (313)
..|.+++|.|||+|.+|..+++.|...|. ++..+|.
T Consensus 23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~ 59 (287)
T PRK08223 23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADF 59 (287)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeC
Confidence 45999999999999999999999999998 4667764
No 333
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=95.16 E-value=0.13 Score=48.70 Aligned_cols=90 Identities=10% Similarity=0.140 Sum_probs=60.8
Q ss_pred cCCCEEEEEcCC--hHHHHHHHHHHhCCCCEEEecCCCCCc--------------cc--cccCCCHHHHhhcCCEEEEec
Q 021388 142 FTGKTVGIIGLG--RIGMAVAKRAEAFSCPINYYSRTEKPN--------------LK--YKYYPSVVELASNCHILVVAC 203 (313)
Q Consensus 142 l~g~~igiiG~G--~iG~~iA~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~e~~~~aDvV~~~l 203 (313)
+.|++|++||-+ ++.++++..+..+|++|.+..|..-.. .+ .....+++++++++|+|..-+
T Consensus 153 l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~ 232 (331)
T PRK02102 153 LKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDV 232 (331)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 789999999997 789999999999999998887644211 11 123468899999999998853
Q ss_pred CCC-------hh-----hhcccCHHHHh-ccCCCcEEEEcC
Q 021388 204 PLT-------EE-----TRHIINREVID-ALGPKGVLINIG 231 (313)
Q Consensus 204 p~~-------~~-----t~~li~~~~l~-~mk~ga~lIn~~ 231 (313)
-.. ++ ...-++++.++ .+|++++|.-+.
T Consensus 233 w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l 273 (331)
T PRK02102 233 WVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL 273 (331)
T ss_pred cccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence 210 00 11234556666 356666665543
No 334
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.15 E-value=0.16 Score=47.83 Aligned_cols=97 Identities=10% Similarity=0.121 Sum_probs=59.7
Q ss_pred CEEEEEcC-ChHHHHHHHHHHhCCC-------CEEEecCCCCC--ccc-------c--------ccCCCHHHHhhcCCEE
Q 021388 145 KTVGIIGL-GRIGMAVAKRAEAFSC-------PINYYSRTEKP--NLK-------Y--------KYYPSVVELASNCHIL 199 (313)
Q Consensus 145 ~~igiiG~-G~iG~~iA~~l~~~G~-------~V~~~~~~~~~--~~~-------~--------~~~~~l~e~~~~aDvV 199 (313)
++|+|||. |.+|..+|-.|...|. ++..+|..... ..+ . ....+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 48999999 9999999999986665 68888984432 111 0 0113445778999999
Q ss_pred EEecCC--Ch-hhhc-cc--C----HH---HHhccC-CCcEEEEcCCCccccHHHHHH
Q 021388 200 VVACPL--TE-ETRH-II--N----RE---VIDALG-PKGVLINIGRGPHVDERELVS 243 (313)
Q Consensus 200 ~~~lp~--~~-~t~~-li--~----~~---~l~~mk-~ga~lIn~~rg~~vd~~al~~ 243 (313)
+++.-. .+ .++. ++ | ++ .+.... |.+++|.++ +.+|.-.-+-
T Consensus 83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~ 138 (322)
T cd01338 83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIA 138 (322)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHH
Confidence 998743 12 1221 11 1 11 122234 588899886 5555555333
No 335
>PRK05086 malate dehydrogenase; Provisional
Probab=95.14 E-value=0.1 Score=48.99 Aligned_cols=90 Identities=13% Similarity=0.242 Sum_probs=56.2
Q ss_pred CEEEEEcC-ChHHHHHHHHHHh---CCCCEEEecCCCCCc---ccc---c--c------CCCHHHHhhcCCEEEEecCCC
Q 021388 145 KTVGIIGL-GRIGMAVAKRAEA---FSCPINYYSRTEKPN---LKY---K--Y------YPSVVELASNCHILVVACPLT 206 (313)
Q Consensus 145 ~~igiiG~-G~iG~~iA~~l~~---~G~~V~~~~~~~~~~---~~~---~--~------~~~l~e~~~~aDvV~~~lp~~ 206 (313)
++|+|||. |.+|+.++..+.. .+..+..+|+.+... ... . . ..++.+.++++|+|+++.-..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 58999999 9999999988743 445788888764321 000 1 0 235567789999999997532
Q ss_pred hh---hh-ccc------CHHHHhc---cCCCcEEEEcCCCc
Q 021388 207 EE---TR-HII------NREVIDA---LGPKGVLINIGRGP 234 (313)
Q Consensus 207 ~~---t~-~li------~~~~l~~---mk~ga~lIn~~rg~ 234 (313)
.. ++ .++ -.+..+. ..+.+++++++-..
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 11 11 111 1233333 35778999987653
No 336
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=95.10 E-value=0.039 Score=46.01 Aligned_cols=85 Identities=9% Similarity=0.128 Sum_probs=54.1
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcccc---ccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHH
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY---KYYPSVVELASNCHILVVACPLTEETRHIINREVI 218 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~---~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l 218 (313)
..|++|++||+= +++++.++..+.++.++|+++...... ......++++++||+|++.-. .-..+-+ .+++
T Consensus 9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs--TlvN~Ti-~~iL 82 (147)
T PF04016_consen 9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS--TLVNGTI-DDIL 82 (147)
T ss_dssp TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH--HCCTTTH-HHHH
T ss_pred cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee--eeecCCH-HHHH
Confidence 578999999972 247888888889999999988532211 123456789999999887642 1011112 5577
Q ss_pred hccCCCcEEEEcCC
Q 021388 219 DALGPKGVLINIGR 232 (313)
Q Consensus 219 ~~mk~ga~lIn~~r 232 (313)
+..++++.++=.|-
T Consensus 83 ~~~~~~~~vil~Gp 96 (147)
T PF04016_consen 83 ELARNAREVILYGP 96 (147)
T ss_dssp HHTTTSSEEEEESC
T ss_pred HhCccCCeEEEEec
Confidence 77776766666553
No 337
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.06 E-value=0.05 Score=53.91 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=68.4
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc--------cccc--CCCHHHHhhcCCEEEEec--C-CChh
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL--------KYKY--YPSVVELASNCHILVVAC--P-LTEE 208 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------~~~~--~~~l~e~~~~aDvV~~~l--p-~~~~ 208 (313)
+.|++++|+|+|.-|.+.|+.|...|++|.++|....... +... .....+.+.++|+|+..- | ..|.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~ 85 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPE 85 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHH
Confidence 5689999999999999999999999999999995432111 0000 111234567899887764 2 1221
Q ss_pred h-------hcccCHHHH--hc-cC-----CCcEEEEcCCCccccHHHHHHHHHhCC
Q 021388 209 T-------RHIINREVI--DA-LG-----PKGVLINIGRGPHVDERELVSALVEGR 249 (313)
Q Consensus 209 t-------~~li~~~~l--~~-mk-----~ga~lIn~~rg~~vd~~al~~al~~~~ 249 (313)
. ..++.+-.+ .. ++ ...+-|--+.|......-+.+.|+...
T Consensus 86 ~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g 141 (468)
T PRK04690 86 ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAG 141 (468)
T ss_pred HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcC
Confidence 1 113443332 33 32 134556666788888888888887644
No 338
>PLN02602 lactate dehydrogenase
Probab=95.06 E-value=0.057 Score=51.48 Aligned_cols=86 Identities=16% Similarity=0.295 Sum_probs=56.4
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc--------------ccc--CCCHHHHhhcCCEEEEecCCC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK--------------YKY--YPSVVELASNCHILVVACPLT 206 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~--------------~~~--~~~l~e~~~~aDvV~~~lp~~ 206 (313)
++|+|||.|.+|..+|-.+...|. ++..+|...+...+ ... ..+. +.+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 699999999999999999987665 58899987653221 011 1233 4489999999986432
Q ss_pred --h-hhhc-cc--C-------HHHHhccCCCcEEEEcC
Q 021388 207 --E-ETRH-II--N-------REVIDALGPKGVLINIG 231 (313)
Q Consensus 207 --~-~t~~-li--~-------~~~l~~mk~ga~lIn~~ 231 (313)
+ .++. ++ | .+.+....|.+++|+++
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 1 1221 11 1 12233456788999987
No 339
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=95.05 E-value=0.028 Score=48.49 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=43.4
Q ss_pred EEEEEcCChHHHHHHHH--HHhCCCCE-EEecCCCCCc----cc--cccCCCHHHHhh--cCCEEEEecCC
Q 021388 146 TVGIIGLGRIGMAVAKR--AEAFSCPI-NYYSRTEKPN----LK--YKYYPSVVELAS--NCHILVVACPL 205 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~--l~~~G~~V-~~~~~~~~~~----~~--~~~~~~l~e~~~--~aDvV~~~lp~ 205 (313)
++.|||.|++|++++.. .+..||++ .+||..++.. .+ ....+++++.++ +.|+.++|+|.
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 68999999999999874 35788985 5788776521 11 122356777776 67899999994
No 340
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=95.03 E-value=0.25 Score=46.27 Aligned_cols=59 Identities=24% Similarity=0.272 Sum_probs=43.2
Q ss_pred CEEEEEcC-ChHHHHHHHHHHhCCCC--EEEecCCC--CCccc---------------cc--cCCCHHHHhhcCCEEEEe
Q 021388 145 KTVGIIGL-GRIGMAVAKRAEAFSCP--INYYSRTE--KPNLK---------------YK--YYPSVVELASNCHILVVA 202 (313)
Q Consensus 145 ~~igiiG~-G~iG~~iA~~l~~~G~~--V~~~~~~~--~~~~~---------------~~--~~~~l~e~~~~aDvV~~~ 202 (313)
++|+|+|. |.+|..++..+...|.. |..+|+.. +...+ .. ...+. +.+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 58999998 99999999999988864 89999854 21110 00 11243 458999999999
Q ss_pred cC
Q 021388 203 CP 204 (313)
Q Consensus 203 lp 204 (313)
..
T Consensus 80 ag 81 (309)
T cd05294 80 AG 81 (309)
T ss_pred cC
Confidence 85
No 341
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.02 E-value=0.067 Score=51.33 Aligned_cols=84 Identities=19% Similarity=0.314 Sum_probs=60.5
Q ss_pred cCCCEEEEEcCC----------hHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEEecCCC
Q 021388 142 FTGKTVGIIGLG----------RIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKYYPSVVELASNCHILVVACPLT 206 (313)
Q Consensus 142 l~g~~igiiG~G----------~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~~lp~~ 206 (313)
+.||+|||+|+- .-...++++|+..|.+|.+|||-..... +.....+++++++.||+++++....
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew~ 387 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEWD 387 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccHH
Confidence 889999999985 3567899999999999999998664322 2345678999999999999987643
Q ss_pred hhhhcccCHHHHhccCCCcEEEE
Q 021388 207 EETRHIINREVIDALGPKGVLIN 229 (313)
Q Consensus 207 ~~t~~li~~~~l~~mk~ga~lIn 229 (313)
+ -+. ++-+.+ .|| +.++++
T Consensus 388 e-f~~-~d~~~~-~m~-~~~v~D 406 (414)
T COG1004 388 E-FRD-LDFEKL-LMK-TPVVID 406 (414)
T ss_pred H-Hhc-cChhhh-hcc-CCEEEe
Confidence 2 222 232333 454 556665
No 342
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.00 E-value=0.055 Score=52.97 Aligned_cols=87 Identities=21% Similarity=0.167 Sum_probs=57.5
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-------ccc----cCCCHH---H-HhhcCCEEEEecCCC
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-------KYK----YYPSVV---E-LASNCHILVVACPLT 206 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------~~~----~~~~l~---e-~~~~aDvV~~~lp~~ 206 (313)
+..+++.|+|+|.+|+.+++.|...|.+|+++|.+++... +.. ...+.+ + -+.++|.|+++.+..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 4468899999999999999999999999999988765210 111 012222 2 357899998888865
Q ss_pred hhhhcccCHHHHhccCCCcEEEEc
Q 021388 207 EETRHIINREVIDALGPKGVLINI 230 (313)
Q Consensus 207 ~~t~~li~~~~l~~mk~ga~lIn~ 230 (313)
..+ ++-......+.+..+++-+
T Consensus 309 ~~n--~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 309 EAN--ILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred HHH--HHHHHHHHHhCCCeEEEEE
Confidence 433 3323344555555555543
No 343
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=94.99 E-value=1.2 Score=39.71 Aligned_cols=42 Identities=19% Similarity=0.123 Sum_probs=36.7
Q ss_pred ccccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 137 KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 137 ~~~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
+..-.+.|++|.|||.|.++..=++.|..+|++|.++++...
T Consensus 18 pi~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 18 FISLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred eeEEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 455678899999999999999988999999999999987654
No 344
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=94.98 E-value=0.16 Score=47.64 Aligned_cols=60 Identities=15% Similarity=0.165 Sum_probs=48.1
Q ss_pred cCCCEEEEEcC---ChHHHHHHHHHHhCCC-CEEEecCCCCCcc-----ccccCCCHHHHhhcCCEEEE
Q 021388 142 FTGKTVGIIGL---GRIGMAVAKRAEAFSC-PINYYSRTEKPNL-----KYKYYPSVVELASNCHILVV 201 (313)
Q Consensus 142 l~g~~igiiG~---G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~-----~~~~~~~l~e~~~~aDvV~~ 201 (313)
+.|.+|+++|= +++.++++..+..+|+ +|.+..|..-... ......++++.++.+|+|..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 67899999998 5999999999999999 8988876542211 12335789999999999976
No 345
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.93 E-value=0.047 Score=53.88 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=69.8
Q ss_pred cCCCEEEEEcCChHHHH-HHHHHHhCCCCEEEecCCCCCc------cccccC-CCHHHHhhcCCEEEEec--CC-Chhhh
Q 021388 142 FTGKTVGIIGLGRIGMA-VAKRAEAFSCPINYYSRTEKPN------LKYKYY-PSVVELASNCHILVVAC--PL-TEETR 210 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~-iA~~l~~~G~~V~~~~~~~~~~------~~~~~~-~~l~e~~~~aDvV~~~l--p~-~~~t~ 210 (313)
.+++++.|+|+|..|.+ +|+.|+..|++|.++|...... .+.... ..-.+.+..+|+|+..- |. .|..+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 56789999999999999 7999999999999999764321 121111 11234456799887764 22 22211
Q ss_pred -------cccCH-HHHhcc-CC-CcEEEEcCCCccccHHHHHHHHHhCC
Q 021388 211 -------HIINR-EVIDAL-GP-KGVLINIGRGPHVDERELVSALVEGR 249 (313)
Q Consensus 211 -------~li~~-~~l~~m-k~-ga~lIn~~rg~~vd~~al~~al~~~~ 249 (313)
.++++ +++..+ ++ ..+-|--+.|......-+.+.|+...
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g 133 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG 133 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence 23333 333333 33 34556666799888888888887665
No 346
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=94.91 E-value=0.12 Score=47.56 Aligned_cols=62 Identities=24% Similarity=0.244 Sum_probs=43.4
Q ss_pred CCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCCCccccc--cCCCHH-HH-hhcCCEEEEecCC
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEKPNLKYK--YYPSVV-EL-ASNCHILVVACPL 205 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~~~~~~~--~~~~l~-e~-~~~aDvV~~~lp~ 205 (313)
++++.|+|.|..+++++..|+..|++ |.+++|+.++..... ...+.. ++ ...+|+|+.++|.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~~~~~~dlvINaTp~ 188 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDLGGIEADILVNVTPI 188 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhcccccCCEEEECCcc
Confidence 46899999999999999999999985 999999875432110 001111 11 2457888888874
No 347
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=94.91 E-value=0.041 Score=56.49 Aligned_cols=84 Identities=17% Similarity=0.193 Sum_probs=57.5
Q ss_pred CCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----ccccc----CCCH---HH-HhhcCCEEEEecCCChhhh
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKY----YPSV---VE-LASNCHILVVACPLTEETR 210 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~----~~~l---~e-~~~~aDvV~~~lp~~~~t~ 210 (313)
..++-|+|+|++|+.+++.|.+.|.++.+.|.+++.. .+... .++. ++ -++++|.++++++.++.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 4689999999999999999999999999999877632 12111 1222 22 2568999999998766655
Q ss_pred cccCHHHHhccCCCcEEEE
Q 021388 211 HIINREVIDALGPKGVLIN 229 (313)
Q Consensus 211 ~li~~~~l~~mk~ga~lIn 229 (313)
.++ ...+.+.|...++-
T Consensus 480 ~i~--~~ar~~~p~~~iia 496 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIA 496 (621)
T ss_pred HHH--HHHHHhCCCCeEEE
Confidence 442 34444455544443
No 348
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=94.88 E-value=0.095 Score=53.33 Aligned_cols=64 Identities=20% Similarity=0.368 Sum_probs=48.8
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc-c------ccCCC---HHHHhhcCCEEEEecC
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK-Y------KYYPS---VVELASNCHILVVACP 204 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~-~------~~~~~---l~e~~~~aDvV~~~lp 204 (313)
....|+|||||-|..|+.+++.++.+|++|.++|+.++.... . ....+ +.++++++|+|.....
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e 92 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE 92 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence 478899999999999999999999999999999987652221 0 01233 5566788999876544
No 349
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=94.81 E-value=0.17 Score=47.96 Aligned_cols=90 Identities=12% Similarity=0.171 Sum_probs=62.0
Q ss_pred cCCCEEEEEcCC--hHHHHHHHHHHhCCCCEEEecCCCCCc--------------cc--cccCCCHHHHhhcCCEEEEec
Q 021388 142 FTGKTVGIIGLG--RIGMAVAKRAEAFSCPINYYSRTEKPN--------------LK--YKYYPSVVELASNCHILVVAC 203 (313)
Q Consensus 142 l~g~~igiiG~G--~iG~~iA~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~e~~~~aDvV~~~l 203 (313)
+.|++|+++|-+ ++.++++..+..+|++|....|..-.. .+ .....++++.++++|+|..-.
T Consensus 153 l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~ 232 (332)
T PRK04284 153 YKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDV 232 (332)
T ss_pred cCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence 788999999975 889999999999999999887653211 11 223578999999999998743
Q ss_pred CCCh--------h-----hhcccCHHHHhccC-CCcEEEEcC
Q 021388 204 PLTE--------E-----TRHIINREVIDALG-PKGVLINIG 231 (313)
Q Consensus 204 p~~~--------~-----t~~li~~~~l~~mk-~ga~lIn~~ 231 (313)
-... + ...-++++.++.++ |+++|.-+.
T Consensus 233 w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 233 WVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred cccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence 1110 0 12234666777765 466666654
No 350
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=94.78 E-value=0.041 Score=43.61 Aligned_cols=96 Identities=15% Similarity=0.174 Sum_probs=60.9
Q ss_pred cCChHHHHHHHHHHhC----CCCEE-EecCC--CCCc-----cccccCCCHHHHhh--cCCEEEEecCCChhhhcccCHH
Q 021388 151 GLGRIGMAVAKRAEAF----SCPIN-YYSRT--EKPN-----LKYKYYPSVVELAS--NCHILVVACPLTEETRHIINRE 216 (313)
Q Consensus 151 G~G~iG~~iA~~l~~~----G~~V~-~~~~~--~~~~-----~~~~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~~~ 216 (313)
|+|.||+.+++.+... +++|. +++++ .... .......++++++. ..|+|+=|.+. +... +-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~~----~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAVA----EY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHHH----HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHHH----HH
Confidence 8999999999999865 67764 56666 1111 11234568999988 89999988553 2222 33
Q ss_pred HHhccCCCcEEEEcCCCccc---cHHHHHHHHHhCCee
Q 021388 217 VIDALGPKGVLINIGRGPHV---DERELVSALVEGRLG 251 (313)
Q Consensus 217 ~l~~mk~ga~lIn~~rg~~v---d~~al~~al~~~~l~ 251 (313)
....|+.|.-+|-.+.+.+. ..+.|.++.++++..
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~ 113 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARKNGVR 113 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-E
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCE
Confidence 55667889999999988888 444566666665543
No 351
>PLN02342 ornithine carbamoyltransferase
Probab=94.77 E-value=0.22 Score=47.36 Aligned_cols=91 Identities=13% Similarity=0.126 Sum_probs=62.0
Q ss_pred ccCCCEEEEEcCC-hHHHHHHHHHHhCCCCEEEecCCCCCc----------cc---cccCCCHHHHhhcCCEEEEecCC-
Q 021388 141 KFTGKTVGIIGLG-RIGMAVAKRAEAFSCPINYYSRTEKPN----------LK---YKYYPSVVELASNCHILVVACPL- 205 (313)
Q Consensus 141 ~l~g~~igiiG~G-~iG~~iA~~l~~~G~~V~~~~~~~~~~----------~~---~~~~~~l~e~~~~aDvV~~~lp~- 205 (313)
.+.|++|+++|=+ ++.++++..+..+|++|.+..|..-.. .+ +....++++.++.+|+|..-.-.
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s 270 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWAS 270 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccc
Confidence 3789999999973 588888899999999998887654211 01 22357889999999999876311
Q ss_pred --C-hh--------hhcccCHHHHhccCCCcEEEEcC
Q 021388 206 --T-EE--------TRHIINREVIDALGPKGVLINIG 231 (313)
Q Consensus 206 --~-~~--------t~~li~~~~l~~mk~ga~lIn~~ 231 (313)
. +. ....++++.++.+|++++|.-+.
T Consensus 271 ~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL 307 (348)
T PLN02342 271 MGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL 307 (348)
T ss_pred cccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence 1 11 11345666666677766666554
No 352
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.75 E-value=0.27 Score=48.19 Aligned_cols=109 Identities=17% Similarity=0.255 Sum_probs=69.9
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc---------cccccC--CCHHHHhhcCCEEEEecCCCh---
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN---------LKYKYY--PSVVELASNCHILVVACPLTE--- 207 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~---------~~~~~~--~~l~e~~~~aDvV~~~lp~~~--- 207 (313)
+.++++.|+|.|.+|.++|+.|...|++|.++|...... .+.... ...++....+|+|+..---.+
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p 82 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQP 82 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCH
Confidence 568999999999999999999999999999998755421 121111 112334568999887643322
Q ss_pred hhhc-------ccC-HHHHhc-cC---CCcEEEEcCCCccccHHHHHHHHHhCCe
Q 021388 208 ETRH-------IIN-REVIDA-LG---PKGVLINIGRGPHVDERELVSALVEGRL 250 (313)
Q Consensus 208 ~t~~-------li~-~~~l~~-mk---~ga~lIn~~rg~~vd~~al~~al~~~~l 250 (313)
..+. ++. .+++.. ++ ...+-|--+.|......-+...|+....
T Consensus 83 ~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~ 137 (445)
T PRK04308 83 DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGL 137 (445)
T ss_pred HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCC
Confidence 2111 222 233333 32 2345566667988888888888876444
No 353
>PRK04148 hypothetical protein; Provisional
Probab=94.75 E-value=0.062 Score=44.07 Aligned_cols=61 Identities=18% Similarity=0.254 Sum_probs=43.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc-----cCCCHHHHhhcCCEEEEecC
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK-----YYPSVVELASNCHILVVACP 204 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~-----~~~~l~e~~~~aDvV~~~lp 204 (313)
.++++..||+| -|..+|..|+..|++|++.|.++.... +.. .+..-.++-+.+|+|-..-|
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56789999999 999999999999999999998876321 111 11222355667777766655
No 354
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=94.74 E-value=0.2 Score=48.93 Aligned_cols=146 Identities=12% Similarity=0.134 Sum_probs=88.5
Q ss_pred HHhhCCCccEEEEcCcCCCcCChh-hhhhcCcEEEcCC-CCC---hHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCC
Q 021388 61 LIDALPKLEIVSSFSVGLDKVDMV-KCKEKGVRVTNTP-DVL---TDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGD 135 (313)
Q Consensus 61 ~l~~~~~Lk~i~~~~~G~d~id~~-~~~~~gI~v~n~~-~~~---~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~ 135 (313)
++..+. -+|.....+-. .+. .+...+|+|.|.- |.. ..+.++. +.+..++ |.
T Consensus 178 vLs~y~--D~IviR~~~~~--~~~e~A~~s~vPVINAgdg~~~HPtQaLaDl-----~Ti~E~~---------g~----- 234 (429)
T PRK11891 178 VMSGYV--DALVIRHPEQG--SVAEFARATNLPVINGGDGPGEHPSQALLDL-----YTIQREF---------SR----- 234 (429)
T ss_pred HHHHhC--CEEEEeCCchh--HHHHHHHhCCCCEEECCCCCCCCcHHHHHHH-----HHHHHHh---------Cc-----
Confidence 555553 34544433222 332 3344689999986 433 4566663 2222211 11
Q ss_pred cccccccCCCEEEEEcCC---hHHHHHHHHHHhC-CCCEEEecCCCCC-cc---------c--cccCCCHHHHhhcCCEE
Q 021388 136 YKLTTKFTGKTVGIIGLG---RIGMAVAKRAEAF-SCPINYYSRTEKP-NL---------K--YKYYPSVVELASNCHIL 199 (313)
Q Consensus 136 ~~~~~~l~g~~igiiG~G---~iG~~iA~~l~~~-G~~V~~~~~~~~~-~~---------~--~~~~~~l~e~~~~aDvV 199 (313)
.+..+.|++|+++|-+ ++.++++..+..+ |++|.+..+..-. .. + +....++++.++.+|+|
T Consensus 235 --~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVV 312 (429)
T PRK11891 235 --LGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVV 312 (429)
T ss_pred --cCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEE
Confidence 1223789999999994 8999999998876 9999888765431 11 1 22357899999999999
Q ss_pred EEecCCChh----------hhcccCHHHHhc-cCCCcEEEEcC
Q 021388 200 VVACPLTEE----------TRHIINREVIDA-LGPKGVLINIG 231 (313)
Q Consensus 200 ~~~lp~~~~----------t~~li~~~~l~~-mk~ga~lIn~~ 231 (313)
....-..+. ...-++++.++. .|++++|.-+.
T Consensus 313 Yt~~~q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcL 355 (429)
T PRK11891 313 YATRIQKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPL 355 (429)
T ss_pred EEcCchhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCC
Confidence 884421111 112356777777 77777776554
No 355
>PRK06392 homoserine dehydrogenase; Provisional
Probab=94.71 E-value=0.23 Score=46.87 Aligned_cols=105 Identities=13% Similarity=0.181 Sum_probs=65.5
Q ss_pred EEEEEcCChHHHHHHHHHHh--------CCCCEE-EecCCCC--Cccc--------------c-cc-CC--CHHHHh-hc
Q 021388 146 TVGIIGLGRIGMAVAKRAEA--------FSCPIN-YYSRTEK--PNLK--------------Y-KY-YP--SVVELA-SN 195 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~--------~G~~V~-~~~~~~~--~~~~--------------~-~~-~~--~l~e~~-~~ 195 (313)
+|+|+|+|++|+.+++.|.. ++.+|. +.|++.. ...+ . .. .. ++++++ .+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 79999999999999999875 455654 4454431 1111 0 00 12 455553 46
Q ss_pred CCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccc-cHHHHHHHHHhCCee
Q 021388 196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV-DERELVSALVEGRLG 251 (313)
Q Consensus 196 aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~v-d~~al~~al~~~~l~ 251 (313)
+|+|+=|.|...+-... -.-+.+.|+.|.-+|-...|.+. ..+.|.++.++++..
T Consensus 82 ~DVvVE~t~~~~~g~~~-~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~ 137 (326)
T PRK06392 82 PDVIVDVTPASKDGIRE-KNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRI 137 (326)
T ss_pred CCEEEECCCCCCcCchH-HHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCe
Confidence 89999888743211111 12345667889888888887774 456677777766554
No 356
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.70 E-value=0.32 Score=43.15 Aligned_cols=88 Identities=20% Similarity=0.288 Sum_probs=55.2
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc----c-CCCHHHH-----hhcCCEEEEecCCC
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK----Y-YPSVVEL-----ASNCHILVVACPLT 206 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~----~-~~~l~e~-----~~~aDvV~~~lp~~ 206 (313)
..|+++.|.|.|.+|+.+++.++..|.+|++.+++++... +.. . ..+..+. -...|+++.+++..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~ 212 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP 212 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence 3578999999999999999999999999999887653211 100 0 0111111 13467777665531
Q ss_pred hhhhcccCHHHHhccCCCcEEEEcCCCc
Q 021388 207 EETRHIINREVIDALGPKGVLINIGRGP 234 (313)
Q Consensus 207 ~~t~~li~~~~l~~mk~ga~lIn~~rg~ 234 (313)
. .....+..|+++..+++.+...
T Consensus 213 ~-----~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 213 E-----TLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred H-----HHHHHHHhcccCCEEEEEccCC
Confidence 1 1244556677777777766543
No 357
>PRK07877 hypothetical protein; Provisional
Probab=94.65 E-value=0.15 Score=53.13 Aligned_cols=94 Identities=15% Similarity=0.219 Sum_probs=61.8
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCC------------Cccc-------------------cc--
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEK------------PNLK-------------------YK-- 184 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~------------~~~~-------------------~~-- 184 (313)
..|.+++|+|+|+| +|..+|..|...|. ++...|...- ...| ..
T Consensus 103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 35999999999999 99999999998884 6777663210 0001 00
Q ss_pred ----cCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcccc
Q 021388 185 ----YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVD 237 (313)
Q Consensus 185 ----~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd 237 (313)
...++++++.++|+|+-|+- +-+++.++++...+.- -.++.-.+.++.+|
T Consensus 182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~--iP~i~~~~~~g~~~ 235 (722)
T PRK07877 182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARR--IPVLMATSDRGLLD 235 (722)
T ss_pred eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcC--CCEEEEcCCCCCcC
Confidence 01357788999999988775 5678888877655542 23444444334343
No 358
>PRK07411 hypothetical protein; Validated
Probab=94.63 E-value=0.085 Score=51.06 Aligned_cols=83 Identities=14% Similarity=0.125 Sum_probs=56.0
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCC-------------ccc-----------------c--c--
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKP-------------NLK-----------------Y--K-- 184 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~-------------~~~-----------------~--~-- 184 (313)
..|...+|.|||+|.+|..+|+.|...|. ++..+|...-. ..| . .
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~ 113 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY 113 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence 45899999999999999999999999998 47777643210 000 0 0
Q ss_pred --c--CCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCC
Q 021388 185 --Y--YPSVVELASNCHILVVACPLTEETRHIINREVIDALGP 223 (313)
Q Consensus 185 --~--~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ 223 (313)
. ..+..+++.++|+|+.|+ ++.+++.++++.....-+|
T Consensus 114 ~~~~~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~p 155 (390)
T PRK07411 114 ETRLSSENALDILAPYDVVVDGT-DNFPTRYLVNDACVLLNKP 155 (390)
T ss_pred ecccCHHhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCC
Confidence 0 013456788899887765 4556777777655544333
No 359
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=94.61 E-value=0.13 Score=47.93 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=25.7
Q ss_pred EEEEEcCChHHHHHHHHHHhCCCC-EEEec
Q 021388 146 TVGIIGLGRIGMAVAKRAEAFSCP-INYYS 174 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~G~~-V~~~~ 174 (313)
+|.|+|.|.+|..+|+.|...|.. +..+|
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD 30 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVD 30 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 589999999999999999999984 66666
No 360
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=94.61 E-value=0.096 Score=56.49 Aligned_cols=88 Identities=10% Similarity=0.150 Sum_probs=62.2
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCC--------------------------------Cccc--c----
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK--------------------------------PNLK--Y---- 183 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~--------------------------------~~~~--~---- 183 (313)
+.-.++.|+|.|++|+..++.+..+|++ . .++..- ...+ +
T Consensus 201 v~P~~vVi~G~G~Vg~gA~~i~~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~ 278 (1042)
T PLN02819 201 ICPLVFVFTGSGNVSQGAQEIFKLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKAD 278 (1042)
T ss_pred CCCeEEEEeCCchHHHHHHHHHhhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhh
Confidence 3457899999999999999999988665 1 111000 0000 0
Q ss_pred ------ccCCC-HHHHhhcCCEEEEecCCChhhhcccCHH-HHhccCCCc----EEEEcC
Q 021388 184 ------KYYPS-VVELASNCHILVVACPLTEETRHIINRE-VIDALGPKG----VLINIG 231 (313)
Q Consensus 184 ------~~~~~-l~e~~~~aDvV~~~lp~~~~t~~li~~~-~l~~mk~ga----~lIn~~ 231 (313)
.+.+. +++.+..+|+++.++-..+....++.++ ..+.||+|. +++|++
T Consensus 279 y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs 338 (1042)
T PLN02819 279 YYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT 338 (1042)
T ss_pred hccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence 00111 3468889999999998777788889888 778899998 888876
No 361
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.61 E-value=0.061 Score=53.10 Aligned_cols=107 Identities=15% Similarity=0.198 Sum_probs=65.7
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcccc------ccC-CCHHHHhhcCCEEEEec--C-CChhhh-
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY------KYY-PSVVELASNCHILVVAC--P-LTEETR- 210 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~------~~~-~~l~e~~~~aDvV~~~l--p-~~~~t~- 210 (313)
-.|++|+|+|+|.-|.+.++.|+. |++|.++|......... ... ....+.+.++|+|+..= | .+|...
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~ 82 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKI 82 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHH
Confidence 457899999999999999999995 99999999543321100 000 11124567899887753 2 122111
Q ss_pred ------cccCH-HHH-hccCCC-cEEEEcCCCccccHHHHHHHHHhCC
Q 021388 211 ------HIINR-EVI-DALGPK-GVLINIGRGPHVDERELVSALVEGR 249 (313)
Q Consensus 211 ------~li~~-~~l-~~mk~g-a~lIn~~rg~~vd~~al~~al~~~~ 249 (313)
.++.+ +++ ..++.. .+=|--+.|+.....-+...|+...
T Consensus 83 a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g 130 (454)
T PRK01368 83 AKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNG 130 (454)
T ss_pred HHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence 13333 232 233332 3445556788888888888888644
No 362
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=94.60 E-value=0.18 Score=47.53 Aligned_cols=93 Identities=11% Similarity=0.113 Sum_probs=57.8
Q ss_pred EEEEEcC-ChHHHHHHHHHHhCCC-------CEEEecCCCCC--ccc---------------cccCCCHHHHhhcCCEEE
Q 021388 146 TVGIIGL-GRIGMAVAKRAEAFSC-------PINYYSRTEKP--NLK---------------YKYYPSVVELASNCHILV 200 (313)
Q Consensus 146 ~igiiG~-G~iG~~iA~~l~~~G~-------~V~~~~~~~~~--~~~---------------~~~~~~l~e~~~~aDvV~ 200 (313)
+|+|||. |.+|..+|-.|...|. ++..+|..... ..+ .....+..+.+++||+|+
T Consensus 5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvVV 84 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAAL 84 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEEE
Confidence 8999998 9999999999987664 68889985421 111 001134457899999999
Q ss_pred EecCCC--h-hhhcc-c--CHH-------HHhccC-CCcEEEEcCCCccccHHH
Q 021388 201 VACPLT--E-ETRHI-I--NRE-------VIDALG-PKGVLINIGRGPHVDERE 240 (313)
Q Consensus 201 ~~lp~~--~-~t~~l-i--~~~-------~l~~mk-~ga~lIn~~rg~~vd~~a 240 (313)
++.-.. + .++.- + |.+ .+.... |.++++.++ +.+|.-.
T Consensus 85 itAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 136 (323)
T TIGR01759 85 LVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA 136 (323)
T ss_pred EeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 986432 1 12221 1 111 122233 488888886 5454444
No 363
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.60 E-value=0.32 Score=45.90 Aligned_cols=95 Identities=15% Similarity=0.178 Sum_probs=59.4
Q ss_pred EEEEEcC-ChHHHHHHHHHHhCCC-------CEEEecCCC--CCcccc---------------ccCCCHHHHhhcCCEEE
Q 021388 146 TVGIIGL-GRIGMAVAKRAEAFSC-------PINYYSRTE--KPNLKY---------------KYYPSVVELASNCHILV 200 (313)
Q Consensus 146 ~igiiG~-G~iG~~iA~~l~~~G~-------~V~~~~~~~--~~~~~~---------------~~~~~l~e~~~~aDvV~ 200 (313)
+|+|+|. |.+|..+|..|...|. ++..+|+.. +...+. ....+..+.+++||+|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 7999999 9999999999886553 388889876 322210 01135668899999998
Q ss_pred EecCC--Ch-hhhcc-c--C----HH---HHhcc-CCCcEEEEcCCCccccHHHHH
Q 021388 201 VACPL--TE-ETRHI-I--N----RE---VIDAL-GPKGVLINIGRGPHVDERELV 242 (313)
Q Consensus 201 ~~lp~--~~-~t~~l-i--~----~~---~l~~m-k~ga~lIn~~rg~~vd~~al~ 242 (313)
++.-. .+ +++.- + | ++ .+... +|.+++|.++ +.+|.-.-+
T Consensus 82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~ 135 (323)
T cd00704 82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNALI 135 (323)
T ss_pred EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHHH
Confidence 87632 22 12211 1 1 12 23334 5788888875 556655533
No 364
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=94.59 E-value=0.096 Score=48.84 Aligned_cols=83 Identities=16% Similarity=0.101 Sum_probs=54.0
Q ss_pred CCEEEEEcCChHHHHHHHHHHh-CCCCEE-EecCCCCCc-------ccccc-CCCHHHHhh-----cCCEEEEecCCChh
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEA-FSCPIN-YYSRTEKPN-------LKYKY-YPSVVELAS-----NCHILVVACPLTEE 208 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~-~G~~V~-~~~~~~~~~-------~~~~~-~~~l~e~~~-----~aDvV~~~lp~~~~ 208 (313)
..++||||.|+||+..+..+.. -++++. ++|++++.. .+... +.+.+++++ +.|+|+.++|...+
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H 83 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH 83 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence 4689999999999997776664 356654 566655421 12322 467888884 58899999984322
Q ss_pred hhcccCHHHHhccCCCcEEEEcC
Q 021388 209 TRHIINREVIDALGPKGVLINIG 231 (313)
Q Consensus 209 t~~li~~~~l~~mk~ga~lIn~~ 231 (313)
-+ -.....+.|..+|+-+
T Consensus 84 ~e-----~a~~a~eaGk~VID~s 101 (302)
T PRK08300 84 VR-----HAAKLREAGIRAIDLT 101 (302)
T ss_pred HH-----HHHHHHHcCCeEEECC
Confidence 11 1223356778887776
No 365
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.58 E-value=0.39 Score=47.05 Aligned_cols=94 Identities=19% Similarity=0.200 Sum_probs=61.5
Q ss_pred ccccCCCEEEEEcC----------ChHHHHHHHHHHhCCCCEEEecCCCCCcccccc--CCCHHH-HhhcCCEEEEecCC
Q 021388 139 TTKFTGKTVGIIGL----------GRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY--YPSVVE-LASNCHILVVACPL 205 (313)
Q Consensus 139 ~~~l~g~~igiiG~----------G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~--~~~l~e-~~~~aDvV~~~lp~ 205 (313)
+..+.|++|+|+|+ .+-+..+++.|...|.+|.+||+.-........ ...+++ .+..+|+|++++..
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~h 388 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVSEVKSSHYDAIIVAVGH 388 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccchhhhhcCCCEEEEccCC
Confidence 34589999999999 457889999999999999999997332111000 111222 36789999999875
Q ss_pred ChhhhcccCHHHH-hccCCCcEEEEcCCCcc
Q 021388 206 TEETRHIINREVI-DALGPKGVLINIGRGPH 235 (313)
Q Consensus 206 ~~~t~~li~~~~l-~~mk~ga~lIn~~rg~~ 235 (313)
.+ -+. ++-+.+ ..||...+++| +|+-+
T Consensus 389 ~~-f~~-~~~~~~~~~~~~~~~iiD-~r~~~ 416 (425)
T PRK15182 389 QQ-FKQ-MGSEDIRGFGKDKHVLYD-LKYVL 416 (425)
T ss_pred HH-hhc-CCHHHHHHhcCCCCEEEE-CCCCC
Confidence 43 222 333333 34554568888 46554
No 366
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.58 E-value=0.13 Score=48.37 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=50.9
Q ss_pred CEEEEEc-CChHHHHHHHHHHhCCC-CEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhcc-
Q 021388 145 KTVGIIG-LGRIGMAVAKRAEAFSC-PINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDAL- 221 (313)
Q Consensus 145 ~~igiiG-~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~m- 221 (313)
.+|+|+| .|-.|+.+.+.|..... ++.....+..... .+.++.++++|+|++++|.... .++...+
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~~-----~~~~~~~~~~DvvFlalp~~~s------~~~~~~~~ 71 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDA-----AARRELLNAADVAILCLPDDAA------REAVALID 71 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCcc-----cCchhhhcCCCEEEECCCHHHH------HHHHHHHH
Confidence 4799998 79999999999987653 4444433322211 2334566789999999994422 2233322
Q ss_pred CCCcEEEEcC
Q 021388 222 GPKGVLINIG 231 (313)
Q Consensus 222 k~ga~lIn~~ 231 (313)
+.|..+||.|
T Consensus 72 ~~g~~VIDlS 81 (313)
T PRK11863 72 NPATRVIDAS 81 (313)
T ss_pred hCCCEEEECC
Confidence 5688999998
No 367
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=94.51 E-value=0.069 Score=50.72 Aligned_cols=56 Identities=23% Similarity=0.408 Sum_probs=42.6
Q ss_pred EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc--c-----ccCCC---HHHHhhcCCEEEE
Q 021388 146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK--Y-----KYYPS---VVELASNCHILVV 201 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~--~-----~~~~~---l~e~~~~aDvV~~ 201 (313)
+|||||-|..|+.+++.++.+|++|.++|.++..... + ....+ +.++++.+|+|..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence 5899999999999999999999999999987653221 0 11223 6667888998754
No 368
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=94.51 E-value=0.35 Score=39.71 Aligned_cols=93 Identities=17% Similarity=0.204 Sum_probs=64.8
Q ss_pred HHHHHHHhCCCCEEEecCCCCC---------ccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhccCCCcEEE
Q 021388 158 AVAKRAEAFSCPINYYSRTEKP---------NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI 228 (313)
Q Consensus 158 ~iA~~l~~~G~~V~~~~~~~~~---------~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lI 228 (313)
..+++|...|++|++=.-.... ..|+....+.++++++||+|+-.-|.+ .+.++.|++|.++|
T Consensus 18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li 89 (136)
T PF05222_consen 18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI 89 (136)
T ss_dssp HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence 5677888889999875543221 123444556678999999987665532 56778899999999
Q ss_pred EcCCCccccHHHHHHHHHhCCeeEEEecCCCC
Q 021388 229 NIGRGPHVDERELVSALVEGRLGGAGLDVFEN 260 (313)
Q Consensus 229 n~~rg~~vd~~al~~al~~~~l~ga~lDV~~~ 260 (313)
-...-. ....+++.|.++++...++|....
T Consensus 90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 90 GFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 876655 588899999999999878777533
No 369
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=94.48 E-value=0.095 Score=50.38 Aligned_cols=37 Identities=16% Similarity=0.297 Sum_probs=33.0
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT 176 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~ 176 (313)
..|.+++|.|||+|.+|..+++.|...|. ++..+|..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 46999999999999999999999999998 68888754
No 370
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.47 E-value=0.097 Score=50.02 Aligned_cols=37 Identities=16% Similarity=0.223 Sum_probs=32.6
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT 176 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~ 176 (313)
..|.+++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45899999999999999999999999998 47777754
No 371
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=94.47 E-value=0.064 Score=49.72 Aligned_cols=90 Identities=19% Similarity=0.295 Sum_probs=67.0
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cc--------------cccCC----------CHHH
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LK--------------YKYYP----------SVVE 191 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~--------------~~~~~----------~l~e 191 (313)
...+.++-++|+|..|-..+...+..|+-|..+|.++... .+ +.... -+.+
T Consensus 161 tv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a~ 240 (356)
T COG3288 161 TVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVAE 240 (356)
T ss_pred cccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHHH
Confidence 4666788899999999999999999999999988654310 11 11111 1345
Q ss_pred HhhcCCEEEEec--CCChhhhcccCHHHHhccCCCcEEEEcC
Q 021388 192 LASNCHILVVAC--PLTEETRHIINREVIDALGPKGVLINIG 231 (313)
Q Consensus 192 ~~~~aDvV~~~l--p~~~~t~~li~~~~l~~mk~ga~lIn~~ 231 (313)
.+++.|+|+... |.-|. ..++.++..+.||||+++||.+
T Consensus 241 ~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 241 QAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence 678999998763 66554 4478899999999999999975
No 372
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.41 E-value=0.12 Score=50.53 Aligned_cols=67 Identities=12% Similarity=0.071 Sum_probs=52.3
Q ss_pred cccCCCEEEEEcC----------ChHHHHHHHHHHhCC-CCEEEecCCCCCcc----ccccCCCHHHHhhcCCEEEEecC
Q 021388 140 TKFTGKTVGIIGL----------GRIGMAVAKRAEAFS-CPINYYSRTEKPNL----KYKYYPSVVELASNCHILVVACP 204 (313)
Q Consensus 140 ~~l~g~~igiiG~----------G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~----~~~~~~~l~e~~~~aDvV~~~lp 204 (313)
.++.|++|+|+|+ .+-...+++.|+..| .+|.+||+...... +.....++++.++.||+|+++.+
T Consensus 316 ~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~ 395 (415)
T PRK11064 316 KRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLVD 395 (415)
T ss_pred cCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECCC
Confidence 4578999999998 457788999999996 99999999744211 11124678899999999999987
Q ss_pred CC
Q 021388 205 LT 206 (313)
Q Consensus 205 ~~ 206 (313)
..
T Consensus 396 ~~ 397 (415)
T PRK11064 396 HS 397 (415)
T ss_pred CH
Confidence 54
No 373
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=94.39 E-value=0.14 Score=48.46 Aligned_cols=63 Identities=10% Similarity=0.062 Sum_probs=49.1
Q ss_pred ccCCCEEEEEcCC--hHHHHHHHHHHhCCCCEEEecCCCCCc--------------cc--cccCCCHHHHhhcCCEEEEe
Q 021388 141 KFTGKTVGIIGLG--RIGMAVAKRAEAFSCPINYYSRTEKPN--------------LK--YKYYPSVVELASNCHILVVA 202 (313)
Q Consensus 141 ~l~g~~igiiG~G--~iG~~iA~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~e~~~~aDvV~~~ 202 (313)
.+.|.+|+++|-+ ++.++++..+..+|+++.+..|..-.. .+ .....++++.++++|+|..-
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 4788999999976 689999999999999999887644211 11 22357899999999999875
Q ss_pred c
Q 021388 203 C 203 (313)
Q Consensus 203 l 203 (313)
.
T Consensus 233 ~ 233 (336)
T PRK03515 233 V 233 (336)
T ss_pred C
Confidence 3
No 374
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.35 E-value=0.11 Score=48.24 Aligned_cols=85 Identities=13% Similarity=0.074 Sum_probs=53.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCCCccccc--cCCCHHH-HhhcCCEEEEecCCChhhhcccCHHHH
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEKPNLKYK--YYPSVVE-LASNCHILVVACPLTEETRHIINREVI 218 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~~~~~~~--~~~~l~e-~~~~aDvV~~~lp~~~~t~~li~~~~l 218 (313)
.|+++.|+|.|.+|...++.++.+|++ |.+.++..+...... ...+..+ .-...|+|+-++.... + + ...+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~i~~~~~~~~g~Dvvid~~G~~~-~---~-~~~~ 218 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEVLDPEKDPRRDYRAIYDASGDPS-L---I-DTLV 218 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccccChhhccCCCCCEEEECCCCHH-H---H-HHHH
Confidence 467899999999999999999999998 555665543221111 0111111 1134688877665321 1 1 4456
Q ss_pred hccCCCcEEEEcCC
Q 021388 219 DALGPKGVLINIGR 232 (313)
Q Consensus 219 ~~mk~ga~lIn~~r 232 (313)
+.++++..++.+|-
T Consensus 219 ~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 219 RRLAKGGEIVLAGF 232 (308)
T ss_pred HhhhcCcEEEEEee
Confidence 77888888887763
No 375
>PRK07806 short chain dehydrogenase; Provisional
Probab=94.35 E-value=0.17 Score=44.82 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=32.1
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCC
Q 021388 142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTE 177 (313)
Q Consensus 142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~ 177 (313)
+.|+++.|.|. |.||+.+++.|...|++|.+.+|+.
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQK 40 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCc
Confidence 67899999996 8999999999999999998887754
No 376
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.30 E-value=0.12 Score=50.12 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=32.4
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT 176 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~ 176 (313)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 45899999999999999999999999998 57777743
No 377
>PRK13529 malate dehydrogenase; Provisional
Probab=94.29 E-value=6.8 Score=39.65 Aligned_cols=211 Identities=13% Similarity=0.176 Sum_probs=130.8
Q ss_pred hCCCccEEEEcCcCCCc-CChhhhhhcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCccccccc
Q 021388 64 ALPKLEIVSSFSVGLDK-VDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKF 142 (313)
Q Consensus 64 ~~~~Lk~i~~~~~G~d~-id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l 142 (313)
..|+. +|+.-=-+..+ +.+..--+..|++.|..=- -+|--+++.+|+.+|-. +..+
T Consensus 237 ~~P~~-~I~~EDf~~~~af~iL~ryr~~i~~FnDDiQ---GTaaV~LAgll~A~r~~-------------------g~~l 293 (563)
T PRK13529 237 RFPNA-LLQFEDFAQKNARRILERYRDEICTFNDDIQ---GTGAVTLAGLLAALKIT-------------------GEPL 293 (563)
T ss_pred hCCCe-EEehhhcCCchHHHHHHHhccCCCeeccccc---hHHHHHHHHHHHHHHHh-------------------CCCh
Confidence 35664 56655444433 3443334557999998532 45667888889888733 3568
Q ss_pred CCCEEEEEcCChHHHHHHHHHHh----CCC-------CEEEecCCCC----C-cc-c-----cc------------cCCC
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEA----FSC-------PINYYSRTEK----P-NL-K-----YK------------YYPS 188 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~----~G~-------~V~~~~~~~~----~-~~-~-----~~------------~~~~ 188 (313)
...+|.|.|.|..|-.+|+.+.. .|. +++.+|+..- . .. . +. ...+
T Consensus 294 ~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~ 373 (563)
T PRK13529 294 SDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVIS 373 (563)
T ss_pred hhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCC
Confidence 88999999999999999999986 587 6888886431 0 00 0 00 1147
Q ss_pred HHHHhhcC--CEEEEecCCChhhhcccCHHHHhccCC---CcEEEEcCCCccccHHHHHHHH--HhCCee-EEEecCCCC
Q 021388 189 VVELASNC--HILVVACPLTEETRHIINREVIDALGP---KGVLINIGRGPHVDERELVSAL--VEGRLG-GAGLDVFEN 260 (313)
Q Consensus 189 l~e~~~~a--DvV~~~lp~~~~t~~li~~~~l~~mk~---ga~lIn~~rg~~vd~~al~~al--~~~~l~-ga~lDV~~~ 260 (313)
|.|+++.+ |+++-+- ..-+.++++.++.|.+ .+++.=.|+-..-.|-.-.+|. .+|+.. +.+. ..
T Consensus 374 L~e~v~~~kPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGs---pf 446 (563)
T PRK13529 374 LLEVVRNVKPTVLIGVS----GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGS---PF 446 (563)
T ss_pred HHHHHhccCCCEEEEec----CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECC---CC
Confidence 89999887 9886532 1236899999999987 8999999887763333333333 346543 2222 11
Q ss_pred CCCCC----CcccCCCceEEccCCCCCcHHH-----HHHHHHHHHHHHHHHHc
Q 021388 261 EPHVP----EELFGLENVVLMPHVGSGTVET-----RKTMADLVLGNLEAHFL 304 (313)
Q Consensus 261 Ep~~~----~~L~~~pnv~lTPH~a~~t~~~-----~~~~~~~~~~nl~~~~~ 304 (313)
+|..- ...=+..|+++=|=++-....+ -+.|.-.+++-|.++..
T Consensus 447 ~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~ 499 (563)
T PRK13529 447 APVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAAHALADCVP 499 (563)
T ss_pred CCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCc
Confidence 22111 1234678899999776433222 24555555555555554
No 378
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.25 E-value=0.14 Score=48.09 Aligned_cols=85 Identities=15% Similarity=0.255 Sum_probs=58.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCc-----ccccc-----CCCHHHHhh---cCCEEEEecCCChh
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPN-----LKYKY-----YPSVVELAS---NCHILVVACPLTEE 208 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~-----~~~~~-----~~~l~e~~~---~aDvV~~~lp~~~~ 208 (313)
.|+++.|+|.|.+|...++.++..|+ +|++.++++++. .++.. ..++.++.. ..|+|+-++... .
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-~ 247 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-S 247 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-H
Confidence 58899999999999999999999999 588888765431 12211 113334332 268888776532 1
Q ss_pred hhcccCHHHHhccCCCcEEEEcCC
Q 021388 209 TRHIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 209 t~~li~~~~l~~mk~ga~lIn~~r 232 (313)
+ + ...++.++++..++.+|.
T Consensus 248 ~---~-~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 248 S---I-NTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred H---H-HHHHHHhhcCCEEEEEcc
Confidence 1 1 456778889998888875
No 379
>CHL00194 ycf39 Ycf39; Provisional
Probab=94.17 E-value=0.089 Score=49.02 Aligned_cols=60 Identities=12% Similarity=0.155 Sum_probs=44.6
Q ss_pred CEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccc-------cCCCHHHHhhcCCEEEEecC
Q 021388 145 KTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYK-------YYPSVVELASNCHILVVACP 204 (313)
Q Consensus 145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~-------~~~~l~e~~~~aDvV~~~lp 204 (313)
++|.|.| .|.+|+.+++.|...|++|.+.+|+..+. .+.. ...++.+.++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4788998 69999999999999999999998875321 1111 12346677899999887654
No 380
>PLN00106 malate dehydrogenase
Probab=94.09 E-value=0.16 Score=47.92 Aligned_cols=92 Identities=14% Similarity=0.277 Sum_probs=59.1
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHhCCC--CEEEecCCCCCcc--c-------cc-----cCCCHHHHhhcCCEEEEecCC
Q 021388 143 TGKTVGIIGL-GRIGMAVAKRAEAFSC--PINYYSRTEKPNL--K-------YK-----YYPSVVELASNCHILVVACPL 205 (313)
Q Consensus 143 ~g~~igiiG~-G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~--~-------~~-----~~~~l~e~~~~aDvV~~~lp~ 205 (313)
..++|+|||. |++|..+|..|...+. ++..+|+.+.... . .. ...++.+.++++|+|+++.-.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~ 96 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV 96 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence 4469999999 9999999999985554 7889997662110 0 00 123457889999999988642
Q ss_pred --Ch-hhhc-cc--C----HH---HHhccCCCcEEEEcCCCc
Q 021388 206 --TE-ETRH-II--N----RE---VIDALGPKGVLINIGRGP 234 (313)
Q Consensus 206 --~~-~t~~-li--~----~~---~l~~mk~ga~lIn~~rg~ 234 (313)
.+ .++. ++ | .+ .+....|.+++++++---
T Consensus 97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 21 1221 11 1 12 233345889999987654
No 381
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=94.09 E-value=0.34 Score=45.89 Aligned_cols=92 Identities=10% Similarity=0.068 Sum_probs=63.0
Q ss_pred ccCCCEEEEEcCC--hHHHHHHHHHHhCCCCEEEecCCCCCc--------------cc--cccCCCHHHHhhcCCEEEEe
Q 021388 141 KFTGKTVGIIGLG--RIGMAVAKRAEAFSCPINYYSRTEKPN--------------LK--YKYYPSVVELASNCHILVVA 202 (313)
Q Consensus 141 ~l~g~~igiiG~G--~iG~~iA~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~e~~~~aDvV~~~ 202 (313)
.+.|.+|+++|-+ ++.++++..+..+|++|.+..|..-.. .+ +....++++.++.+|+|..-
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 232 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD 232 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 3789999999976 789999999999999998887653111 01 22347899999999999875
Q ss_pred cCCC-----h---h-----hhcccCHHHHhcc-CCCcEEEEcCC
Q 021388 203 CPLT-----E---E-----TRHIINREVIDAL-GPKGVLINIGR 232 (313)
Q Consensus 203 lp~~-----~---~-----t~~li~~~~l~~m-k~ga~lIn~~r 232 (313)
.-.. + + ...-++++.++.. |++++|.-+.-
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcLP 276 (334)
T PRK12562 233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLP 276 (334)
T ss_pred CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCCC
Confidence 4210 0 0 1123466677664 67777766653
No 382
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=94.06 E-value=0.13 Score=46.83 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=43.9
Q ss_pred EEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc--cc-------ccCCCHHHHh------hc-CCEEEEecCCC
Q 021388 146 TVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL--KY-------KYYPSVVELA------SN-CHILVVACPLT 206 (313)
Q Consensus 146 ~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--~~-------~~~~~l~e~~------~~-aDvV~~~lp~~ 206 (313)
+|.|.|. |.+|+.+++.|...|++|.+..|+++... +. ...+++.+.+ .. +|.|+++.|..
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~~ 78 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPI 78 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCCC
Confidence 3667776 99999999999999999999998775321 11 1123455666 44 89998887754
No 383
>PRK05442 malate dehydrogenase; Provisional
Probab=94.06 E-value=0.43 Score=45.06 Aligned_cols=94 Identities=10% Similarity=0.077 Sum_probs=57.4
Q ss_pred CEEEEEcC-ChHHHHHHHHHHhCCC-------CEEEecCCCCC--ccc-------c--------ccCCCHHHHhhcCCEE
Q 021388 145 KTVGIIGL-GRIGMAVAKRAEAFSC-------PINYYSRTEKP--NLK-------Y--------KYYPSVVELASNCHIL 199 (313)
Q Consensus 145 ~~igiiG~-G~iG~~iA~~l~~~G~-------~V~~~~~~~~~--~~~-------~--------~~~~~l~e~~~~aDvV 199 (313)
.+|+|||. |.+|..+|-.|...|. ++..+|..+.. ..+ . ....+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999998875443 68888875431 111 0 0122445788999999
Q ss_pred EEecCC--Ch-hhhc-cc--C----HHH----HhccCCCcEEEEcCCCccccHHH
Q 021388 200 VVACPL--TE-ETRH-II--N----REV----IDALGPKGVLINIGRGPHVDERE 240 (313)
Q Consensus 200 ~~~lp~--~~-~t~~-li--~----~~~----l~~mk~ga~lIn~~rg~~vd~~a 240 (313)
+++.-. .+ +++. ++ | +++ -+..++.+++|.++ +.+|.-.
T Consensus 85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t 137 (326)
T PRK05442 85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNA 137 (326)
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHH
Confidence 988642 22 1221 11 1 122 22244688999987 5555544
No 384
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.01 E-value=0.057 Score=43.96 Aligned_cols=33 Identities=33% Similarity=0.383 Sum_probs=28.5
Q ss_pred CCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388 144 GKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT 176 (313)
Q Consensus 144 g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~ 176 (313)
.++|.|+|+|.+|..+|+.|...|+ ++..+|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 5799999999999999999999999 47888754
No 385
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=94.01 E-value=0.11 Score=38.12 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=31.6
Q ss_pred EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc
Q 021388 146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN 180 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~ 180 (313)
++.|||-|.+|-.+|..++.+|.+|..+.+.+...
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 58899999999999999999999999998877644
No 386
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.01 E-value=0.2 Score=45.67 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=31.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCC
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEK 178 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~ 178 (313)
.|+++.|+|.|.+|..+++.++.+|.+ |++.+++++
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~ 156 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPD 156 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 678999999999999999999999997 888776554
No 387
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.93 E-value=0.32 Score=47.72 Aligned_cols=106 Identities=16% Similarity=0.201 Sum_probs=67.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc---------cccccC---CCHHHHhhcCCEEEEec--CC-Ch
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN---------LKYKYY---PSVVELASNCHILVVAC--PL-TE 207 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~---------~~~~~~---~~l~e~~~~aDvV~~~l--p~-~~ 207 (313)
.+-+++|+|+|.+|.++|+.|+..|++|.++|...... .+.... .+ .+.+.++|+|+..- |. .|
T Consensus 5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~-~~~~~~~d~vV~sp~i~~~~p 83 (448)
T PRK03803 5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFD-CELLVQASEIIISPGLALDTP 83 (448)
T ss_pred cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCC-hHHhcCCCEEEECCCCCCCCH
Confidence 34589999999999999999999999999999754321 021111 12 24456889887653 21 22
Q ss_pred hhh-------cccCH-HHHhc-cCCCcEEEEcCCCccccHHHHHHHHHhCC
Q 021388 208 ETR-------HIINR-EVIDA-LGPKGVLINIGRGPHVDERELVSALVEGR 249 (313)
Q Consensus 208 ~t~-------~li~~-~~l~~-mk~ga~lIn~~rg~~vd~~al~~al~~~~ 249 (313)
... .++.+ +++.. ++...+-|--+.|......-+...|+...
T Consensus 84 ~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g 134 (448)
T PRK03803 84 ALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAG 134 (448)
T ss_pred HHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence 111 12322 33333 34334556666799888888888887644
No 388
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=93.90 E-value=0.62 Score=43.20 Aligned_cols=107 Identities=21% Similarity=0.094 Sum_probs=71.0
Q ss_pred CCEEEEEc-CChHHHHHHHHHHhCCCCE-EEecCC--CCCccccccCCCHHHHhhc--CCEEEEecCCChhhhcccCHHH
Q 021388 144 GKTVGIIG-LGRIGMAVAKRAEAFSCPI-NYYSRT--EKPNLKYKYYPSVVELASN--CHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 144 g~~igiiG-~G~iG~~iA~~l~~~G~~V-~~~~~~--~~~~~~~~~~~~l~e~~~~--aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+.+|.|.| .|.+|+.+-+.+.+.|.++ ...++. .....+...+.+++++-.. .|++++++|.. .+...+ ++.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~~~v~G~~~y~sv~dlp~~~~~Dlavi~vpa~-~v~~~l-~e~ 83 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFDSVKEAVEETGANASVIFVPAP-FAADAI-FEA 83 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCcceecCeeccCCHHHHhhccCCCEEEEecCHH-HHHHHH-HHH
Confidence 45677777 4899999999999999883 345665 3344566677899998886 79999999933 333333 333
Q ss_pred HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEE
Q 021388 218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGA 253 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga 253 (313)
.+.=-+.++++..+-+. -++++|.+..++..++-.
T Consensus 84 ~~~Gvk~avIis~Gf~e-~~~~~l~~~a~~~giril 118 (286)
T TIGR01019 84 IDAGIELIVCITEGIPV-HDMLKVKRYMEESGTRLI 118 (286)
T ss_pred HHCCCCEEEEECCCCCH-HHHHHHHHHHHHcCCEEE
Confidence 33212234444444333 467889999998887643
No 389
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=93.90 E-value=0.21 Score=49.93 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=94.3
Q ss_pred ccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHH
Q 021388 139 TTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~ 217 (313)
+..+.|++..|+|-.. +|.+++..|+.....|..+-.. ..++.|.+.++|+|+.++.-. +++-.+
T Consensus 157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK---------T~~lae~v~~ADIvIvAiG~P----efVKgd- 222 (935)
T KOG4230|consen 157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK---------TRNLAEKVSRADIVIVAIGQP----EFVKGD- 222 (935)
T ss_pred CCccccceeEEEecccccCChHHHHHHhcCceEEEecCC---------CccHHHHhccCCEEEEEcCCc----ceeecc-
Confidence 3458999999999886 5899999999999999876432 236889999999999998633 344343
Q ss_pred HhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCceEEccCCCCCcHHHHHHHHHHHHH
Q 021388 218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLG 297 (313)
Q Consensus 218 l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~ 297 (313)
.+|||+++||+|--.+-|... ++|.- ..=||...+----. =.+||--||.-.....-+.+..++
T Consensus 223 --WiKpGavVIDvGINyvpD~~K-----ksg~k--lvGDVdfe~Akeva-------s~ITPVPGGVGPMTVAMLmqNtve 286 (935)
T KOG4230|consen 223 --WIKPGAVVIDVGINYVPDPSK-----KSGFK--LVGDVDFESAKEVA-------SFITPVPGGVGPMTVAMLMQNTVE 286 (935)
T ss_pred --cccCCcEEEEccccccCCCCC-----cccce--EeeecchHhhhhhh-------hccccCCCCcchHHHHHHHHHHHH
Confidence 368999999999776655421 23322 35577433321000 168888888777666666666666
Q ss_pred HHHHHHcC
Q 021388 298 NLEAHFLN 305 (313)
Q Consensus 298 nl~~~~~g 305 (313)
.-.+++.+
T Consensus 287 aAKR~r~e 294 (935)
T KOG4230|consen 287 AAKRQREE 294 (935)
T ss_pred HHHHHHHh
Confidence 66666643
No 390
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.87 E-value=0.15 Score=48.10 Aligned_cols=85 Identities=24% Similarity=0.369 Sum_probs=55.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCC---CCC-----ccccccC----CCHHH--HhhcCCEEEEecCCChh
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT---EKP-----NLKYKYY----PSVVE--LASNCHILVVACPLTEE 208 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~---~~~-----~~~~~~~----~~l~e--~~~~aDvV~~~lp~~~~ 208 (313)
.|.++.|+|.|.+|...++.++..|++|++.+++ +++ ..++... .+..+ .....|+|+-++....
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~- 250 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP- 250 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence 5789999999999999999999999999999874 221 1121111 11111 1234688877765221
Q ss_pred hhcccCHHHHhccCCCcEEEEcCC
Q 021388 209 TRHIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 209 t~~li~~~~l~~mk~ga~lIn~~r 232 (313)
.+ .+.++.++++..++.+|.
T Consensus 251 ---~~-~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 251 ---LA-FEALPALAPNGVVILFGV 270 (355)
T ss_pred ---HH-HHHHHHccCCcEEEEEec
Confidence 12 456677888888777764
No 391
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=93.87 E-value=0.27 Score=47.99 Aligned_cols=104 Identities=18% Similarity=0.146 Sum_probs=67.2
Q ss_pred EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----------cccccC--CCHHHHhhcCCEEEEec--C-CChhh
Q 021388 146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----------LKYKYY--PSVVELASNCHILVVAC--P-LTEET 209 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----------~~~~~~--~~l~e~~~~aDvV~~~l--p-~~~~t 209 (313)
++.|||+|.+|.++|+.|+..|++|.++|...... .+.... .+ .+.+.++|+|+..- | .+|..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 37899999999999999999999999999654311 122111 22 34567899887654 2 22221
Q ss_pred h-------cccCH-HHHhc-cCCCcEEEEcCCCccccHHHHHHHHHhCCe
Q 021388 210 R-------HIINR-EVIDA-LGPKGVLINIGRGPHVDERELVSALVEGRL 250 (313)
Q Consensus 210 ~-------~li~~-~~l~~-mk~ga~lIn~~rg~~vd~~al~~al~~~~l 250 (313)
. .++.+ +++.. ++...+-|.-+.|......-+...|+....
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~ 129 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGL 129 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 1 12322 33333 343455677778999888888888887553
No 392
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.86 E-value=0.098 Score=48.98 Aligned_cols=59 Identities=22% Similarity=0.243 Sum_probs=42.6
Q ss_pred EEEEEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc----------c------ccCCCHHHHhhcCCEEEEecC
Q 021388 146 TVGIIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK----------Y------KYYPSVVELASNCHILVVACP 204 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~----------~------~~~~~l~e~~~~aDvV~~~lp 204 (313)
+|+|||.|.+|..+|-.|...|. ++..+|...+...+ + ....+-.+.+++||+|+++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 58999999999999998876665 58899987653221 0 001122467899999999864
No 393
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=93.84 E-value=0.33 Score=46.37 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=46.7
Q ss_pred ccCCCEEEEEcCC--------hHHHHHHHHHHhCCCCEEEecCCCCCc--------------cc--cccCCCHHHHhhcC
Q 021388 141 KFTGKTVGIIGLG--------RIGMAVAKRAEAFSCPINYYSRTEKPN--------------LK--YKYYPSVVELASNC 196 (313)
Q Consensus 141 ~l~g~~igiiG~G--------~iG~~iA~~l~~~G~~V~~~~~~~~~~--------------~~--~~~~~~l~e~~~~a 196 (313)
.+.|++|+++|.| ++.++++..+..+|++|.+..|..-.. .+ .....++++.++++
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999998743 455788889999999999888753210 11 12357899999999
Q ss_pred CEEEEec
Q 021388 197 HILVVAC 203 (313)
Q Consensus 197 DvV~~~l 203 (313)
|+|..-.
T Consensus 247 Dvvyt~~ 253 (357)
T TIGR03316 247 DIVYPKS 253 (357)
T ss_pred CEEEECC
Confidence 9998763
No 394
>PTZ00325 malate dehydrogenase; Provisional
Probab=93.81 E-value=0.17 Score=47.72 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=44.9
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHHhCC--CCEEEecCCCCCcc--c-------ccc--C---CCHHHHhhcCCEEEEec
Q 021388 141 KFTGKTVGIIGL-GRIGMAVAKRAEAFS--CPINYYSRTEKPNL--K-------YKY--Y---PSVVELASNCHILVVAC 203 (313)
Q Consensus 141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G--~~V~~~~~~~~~~~--~-------~~~--~---~~l~e~~~~aDvV~~~l 203 (313)
-+..++|+|||. |.+|..+|..|...+ .++..+|+...... . ... . .+..+.++.+|+|++++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 367789999999 999999999998444 57889998321110 0 111 1 12257899999999887
Q ss_pred C
Q 021388 204 P 204 (313)
Q Consensus 204 p 204 (313)
-
T Consensus 85 G 85 (321)
T PTZ00325 85 G 85 (321)
T ss_pred C
Confidence 4
No 395
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.75 E-value=0.088 Score=52.21 Aligned_cols=110 Identities=13% Similarity=0.140 Sum_probs=69.3
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------ccccCC--CHHHHhhcCCEEEEec--C-CChhh
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYKYYP--SVVELASNCHILVVAC--P-LTEET 209 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~~~~--~l~e~~~~aDvV~~~l--p-~~~~t 209 (313)
.+.++++.|+|+|..|+++|+.|...|++|.++|+...... +..... ...+.+.++|+|+..- | ..|..
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~ 91 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLL 91 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHH
Confidence 47889999999999999999999999999999997543211 221111 1234456789887663 2 22221
Q ss_pred h-------cccCHHHHhc-------c-CCC-cEEEEcCCCccccHHHHHHHHHhCCe
Q 021388 210 R-------HIINREVIDA-------L-GPK-GVLINIGRGPHVDERELVSALVEGRL 250 (313)
Q Consensus 210 ~-------~li~~~~l~~-------m-k~g-a~lIn~~rg~~vd~~al~~al~~~~l 250 (313)
. .++.+-.+.. + ++. .+-|--+-|+.....-+.+.|+....
T Consensus 92 ~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~ 148 (473)
T PRK00141 92 VDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGF 148 (473)
T ss_pred HHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCC
Confidence 1 1222222321 1 132 34466667888888888888876543
No 396
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=93.75 E-value=0.52 Score=44.46 Aligned_cols=93 Identities=13% Similarity=0.162 Sum_probs=56.6
Q ss_pred EEEEEcC-ChHHHHHHHHHHhCCC-------CEEEecCCCCC--ccc-------cc--------cCCCHHHHhhcCCEEE
Q 021388 146 TVGIIGL-GRIGMAVAKRAEAFSC-------PINYYSRTEKP--NLK-------YK--------YYPSVVELASNCHILV 200 (313)
Q Consensus 146 ~igiiG~-G~iG~~iA~~l~~~G~-------~V~~~~~~~~~--~~~-------~~--------~~~~l~e~~~~aDvV~ 200 (313)
+|+|||. |.+|..+|..|...|. ++..+|+.+.. ..+ .. ...+..+.+++||+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 5899999 9999999999987554 48889985442 111 00 0114467899999999
Q ss_pred EecCCC--h-hhhc-cc--C----H---HHHhcc-CCCcEEEEcCCCccccHHH
Q 021388 201 VACPLT--E-ETRH-II--N----R---EVIDAL-GPKGVLINIGRGPHVDERE 240 (313)
Q Consensus 201 ~~lp~~--~-~t~~-li--~----~---~~l~~m-k~ga~lIn~~rg~~vd~~a 240 (313)
++.-.. + +|+. ++ | + ..+... ++.+++|.++ +.+|.-.
T Consensus 81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t 132 (324)
T TIGR01758 81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA 132 (324)
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence 876332 1 1111 11 1 1 123334 4778888876 4455444
No 397
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=93.74 E-value=0.32 Score=46.28 Aligned_cols=85 Identities=20% Similarity=0.344 Sum_probs=54.7
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCC------cccccc---CC---CHHHHhhcCCEEEEecCCChhhh
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP------NLKYKY---YP---SVVELASNCHILVVACPLTEETR 210 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~------~~~~~~---~~---~l~e~~~~aDvV~~~lp~~~~t~ 210 (313)
.|++|.|.|.|.+|..+++.++.+|.+|++.+.+.++ ..++.. .. .+.++....|+|+-++... .+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~-~~- 260 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAV-HA- 260 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCH-HH-
Confidence 5789999999999999999999999998877654432 112211 11 1222333467777665421 11
Q ss_pred cccCHHHHhccCCCcEEEEcCC
Q 021388 211 HIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 211 ~li~~~~l~~mk~ga~lIn~~r 232 (313)
+ .+.+..++++..++.++.
T Consensus 261 --~-~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 261 --L-GPLLGLLKVNGKLITLGL 279 (360)
T ss_pred --H-HHHHHHhcCCcEEEEeCC
Confidence 1 345677788888777764
No 398
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=93.69 E-value=0.11 Score=45.99 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=46.2
Q ss_pred EEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc-------cccc-------cCCCHHHHhhcCCEEEEecCCC
Q 021388 147 VGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN-------LKYK-------YYPSVVELASNCHILVVACPLT 206 (313)
Q Consensus 147 igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~-------~~~~-------~~~~l~e~~~~aDvV~~~lp~~ 206 (313)
|.|+|. |.+|+.+++.|...|++|.+..|..... .+.. ..+++.+.++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 678885 9999999999999999999998876421 1211 1235677899999999999843
No 399
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.65 E-value=0.31 Score=45.86 Aligned_cols=88 Identities=13% Similarity=0.229 Sum_probs=56.3
Q ss_pred CCCEEEEEcCChHHHHHHHHHHh-CC-CCEEEecCCCCCcccc---ccCCCHHHHhh--cCCEEEEecCCChhhhcccCH
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEA-FS-CPINYYSRTEKPNLKY---KYYPSVVELAS--NCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~-~G-~~V~~~~~~~~~~~~~---~~~~~l~e~~~--~aDvV~~~lp~~~~t~~li~~ 215 (313)
.|.++.|+|.|.+|...++.++. +| .+|++.++++++...+ ......+++.. ..|+|+-++... .+...+ .
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~~~~~~~~~g~d~viD~~G~~-~~~~~~-~ 240 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYLIDDIPEDLAVDHAFECVGGR-GSQSAI-N 240 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceeehhhhhhccCCcEEEECCCCC-ccHHHH-H
Confidence 47899999999999999998885 54 5799998876532211 11111222222 368888777631 011112 4
Q ss_pred HHHhccCCCcEEEEcCC
Q 021388 216 EVIDALGPKGVLINIGR 232 (313)
Q Consensus 216 ~~l~~mk~ga~lIn~~r 232 (313)
..+..++++..++.+|-
T Consensus 241 ~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 241 QIIDYIRPQGTIGLMGV 257 (341)
T ss_pred HHHHhCcCCcEEEEEee
Confidence 56778899988887764
No 400
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=93.63 E-value=0.22 Score=46.17 Aligned_cols=64 Identities=20% Similarity=0.175 Sum_probs=43.5
Q ss_pred CEEEEEcCChHHHHHHHHHHh-CCCCEE-EecCCCCCc-------cccc-cCCCHHHHhh--cCCEEEEecCCChh
Q 021388 145 KTVGIIGLGRIGMAVAKRAEA-FSCPIN-YYSRTEKPN-------LKYK-YYPSVVELAS--NCHILVVACPLTEE 208 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~-~G~~V~-~~~~~~~~~-------~~~~-~~~~l~e~~~--~aDvV~~~lp~~~~ 208 (313)
.++||||.|+||+..+..+.. -++++. ++|++++.. .+.. .+.+.++++. +.|+|+.++|...+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H 77 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAH 77 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHH
Confidence 479999999999988766654 456754 566655421 1222 2457888875 57889999985433
No 401
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=93.61 E-value=6.7 Score=39.82 Aligned_cols=185 Identities=17% Similarity=0.175 Sum_probs=117.7
Q ss_pred hcCcEEEcCCCCChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcCChHHHHHHHHHHh--
Q 021388 88 EKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEA-- 165 (313)
Q Consensus 88 ~~gI~v~n~~~~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~G~iG~~iA~~l~~-- 165 (313)
+..|++.|..= .-+|=-+++-+|+.+|-. +..|...+|.|+|.|..|-.+|+.+..
T Consensus 287 r~~i~~FnDDi---QGTaaV~lAgll~A~r~~-------------------g~~l~d~riv~~GAGsAgigia~ll~~~~ 344 (581)
T PLN03129 287 RTTHLCFNDDI---QGTAAVALAGLLAALRAT-------------------GGDLADQRILFAGAGEAGTGIAELIALAM 344 (581)
T ss_pred ccCCCEecccc---chHHHHHHHHHHHHHHHh-------------------CCchhhceEEEECCCHHHHHHHHHHHHHH
Confidence 34778888743 245666788888887733 346888999999999999999999886
Q ss_pred ---CCC-------CEEEecCCCC----Cc--c-c--------cccCCCHHHHhhc--CCEEEEecCCChhhhcccCHHHH
Q 021388 166 ---FSC-------PINYYSRTEK----PN--L-K--------YKYYPSVVELASN--CHILVVACPLTEETRHIINREVI 218 (313)
Q Consensus 166 ---~G~-------~V~~~~~~~~----~~--~-~--------~~~~~~l~e~~~~--aDvV~~~lp~~~~t~~li~~~~l 218 (313)
.|. +++.+|+..- .. . . .....+|.|+++. .|+++-+-- .-++++++.+
T Consensus 345 ~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~----~~g~Ft~evi 420 (581)
T PLN03129 345 SRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSG----VGGTFTKEVL 420 (581)
T ss_pred HhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecC----CCCCCCHHHH
Confidence 476 6888886431 11 1 0 1123589999998 898875431 2367999999
Q ss_pred hccC---CCcEEEEcCCCccc---cHHHHHHHHHhCCeeEEEecCCCCCCCCC-------CcccCCCceEEccCCCCCcH
Q 021388 219 DALG---PKGVLINIGRGPHV---DERELVSALVEGRLGGAGLDVFENEPHVP-------EELFGLENVVLMPHVGSGTV 285 (313)
Q Consensus 219 ~~mk---~ga~lIn~~rg~~v---d~~al~~al~~~~l~ga~lDV~~~Ep~~~-------~~L~~~pnv~lTPH~a~~t~ 285 (313)
+.|. +.+++.=.|.-..- ..++.. ...+|+...|. .-|.++ ...=+..|+++-|=++-..-
T Consensus 421 ~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~-~~T~G~ai~At-----GSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal 494 (581)
T PLN03129 421 EAMASLNERPIIFALSNPTSKAECTAEEAY-TWTGGRAIFAS-----GSPFDPVEYNGKTFHPGQANNAYIFPGIGLGAL 494 (581)
T ss_pred HHHHhcCCCCEEEECCCCCCCcCcCHHHHH-HhhcCCEEEEe-----CCCCCCeeeCCeeecCccccceeeccchhhHHH
Confidence 9995 88999888876522 223333 33446643221 122221 12346788999998764432
Q ss_pred HH-----HHHHHHHHHHHHHHHHc
Q 021388 286 ET-----RKTMADLVLGNLEAHFL 304 (313)
Q Consensus 286 ~~-----~~~~~~~~~~nl~~~~~ 304 (313)
.+ -+.|.-.+++-|.++..
T Consensus 495 ~~~a~~Itd~m~~aAA~aLA~~v~ 518 (581)
T PLN03129 495 LSGAIRVTDDMLLAAAEALAAQVT 518 (581)
T ss_pred hcCCcCCCHHHHHHHHHHHHHhCC
Confidence 22 25555666666666554
No 402
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=93.57 E-value=0.24 Score=45.85 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=44.7
Q ss_pred CCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcc-------------cc-------ccCCCHHHHhhcCCEEEE
Q 021388 143 TGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNL-------------KY-------KYYPSVVELASNCHILVV 201 (313)
Q Consensus 143 ~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-------------~~-------~~~~~l~e~~~~aDvV~~ 201 (313)
.|++|.|.| .|-||+.+++.|...|++|.+.+|+..... .. .....++++++.+|+|+.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih 82 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH 82 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence 468999999 699999999999999999988776543210 00 012346677888998876
Q ss_pred ecC
Q 021388 202 ACP 204 (313)
Q Consensus 202 ~lp 204 (313)
+..
T Consensus 83 ~A~ 85 (322)
T PLN02662 83 TAS 85 (322)
T ss_pred eCC
Confidence 653
No 403
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.56 E-value=0.39 Score=45.06 Aligned_cols=89 Identities=18% Similarity=0.336 Sum_probs=56.9
Q ss_pred CEEEEEcC-ChHHHHHHHHHHhCCC--CEEEecCCCCCcc------c---ccc--C---CCHHHHhhcCCEEEEecCC--
Q 021388 145 KTVGIIGL-GRIGMAVAKRAEAFSC--PINYYSRTEKPNL------K---YKY--Y---PSVVELASNCHILVVACPL-- 205 (313)
Q Consensus 145 ~~igiiG~-G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~------~---~~~--~---~~l~e~~~~aDvV~~~lp~-- 205 (313)
++|+|||. |.+|..+|-.|...|. ++..+|....... . ... . +++.+.+++||+|+++...
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 48999999 9999999999987775 6888887621100 0 011 1 2235779999999998743
Q ss_pred Ch-hhhc-cc--CH-------HHHhccCCCcEEEEcCCC
Q 021388 206 TE-ETRH-II--NR-------EVIDALGPKGVLINIGRG 233 (313)
Q Consensus 206 ~~-~t~~-li--~~-------~~l~~mk~ga~lIn~~rg 233 (313)
.| +++. ++ |. +.+..-.|.+++|+++..
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP 119 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP 119 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence 22 2222 11 11 223334689999998764
No 404
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=93.49 E-value=0.42 Score=47.01 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=61.1
Q ss_pred CEEEEEcC-ChHHHHHHHHHHhC-------CC--CEEEecCCCCCccc---------------cccCCCHHHHhhcCCEE
Q 021388 145 KTVGIIGL-GRIGMAVAKRAEAF-------SC--PINYYSRTEKPNLK---------------YKYYPSVVELASNCHIL 199 (313)
Q Consensus 145 ~~igiiG~-G~iG~~iA~~l~~~-------G~--~V~~~~~~~~~~~~---------------~~~~~~l~e~~~~aDvV 199 (313)
.+|+|||. |.+|..+|-.|... |. ++..+|+..+...+ .....+-.+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 48999999 99999999998765 44 67888887764322 01012345788999999
Q ss_pred EEecCC--Chh-hhc-cc--C----H---HHHhc-cCCCcEEEEcCCCccccHHHHHH
Q 021388 200 VVACPL--TEE-TRH-II--N----R---EVIDA-LGPKGVLINIGRGPHVDERELVS 243 (313)
Q Consensus 200 ~~~lp~--~~~-t~~-li--~----~---~~l~~-mk~ga~lIn~~rg~~vd~~al~~ 243 (313)
++.... .+. ++. ++ | + ..+.. ..+.+++|.++ +.+|.-..+-
T Consensus 181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~ 236 (444)
T PLN00112 181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALIC 236 (444)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHH
Confidence 998643 221 111 11 1 1 12333 46788998887 5555555444
No 405
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.46 E-value=0.31 Score=45.73 Aligned_cols=88 Identities=15% Similarity=0.267 Sum_probs=56.1
Q ss_pred EEEEEcC-ChHHHHHHHHHHhCCC--CEEEecCCCCCcc------c---cccC-----CCHHHHhhcCCEEEEecCCC--
Q 021388 146 TVGIIGL-GRIGMAVAKRAEAFSC--PINYYSRTEKPNL------K---YKYY-----PSVVELASNCHILVVACPLT-- 206 (313)
Q Consensus 146 ~igiiG~-G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~------~---~~~~-----~~l~e~~~~aDvV~~~lp~~-- 206 (313)
+|+|||. |.+|..+|-.|...|. ++..+|+.+.... . .... +++.+.+++||+|+++....
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 5899999 9999999999886665 6888997662110 0 0001 12467899999999987432
Q ss_pred h-hhhc-cc--CH-------HHHhccCCCcEEEEcCCC
Q 021388 207 E-ETRH-II--NR-------EVIDALGPKGVLINIGRG 233 (313)
Q Consensus 207 ~-~t~~-li--~~-------~~l~~mk~ga~lIn~~rg 233 (313)
+ .++. ++ |. ..+..-.|.+++|+++..
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP 118 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP 118 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 1 1111 11 11 123334689999998654
No 406
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=93.32 E-value=0.51 Score=40.83 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=47.2
Q ss_pred CEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCccc---cc-------cCCCHHHHhhcCCEEEEecCC
Q 021388 145 KTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNLK---YK-------YYPSVVELASNCHILVVACPL 205 (313)
Q Consensus 145 ~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~---~~-------~~~~l~e~~~~aDvV~~~lp~ 205 (313)
++|+|||. |.+|+.+++-++..|++|+++-|++.+... .. ..+++.+.+..-|+|+.+...
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 58999985 999999999999999999999888765422 11 123445678899999998743
No 407
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=93.17 E-value=0.59 Score=44.36 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=46.3
Q ss_pred ccCCCEEEEEcC---ChHHHHHHHHHH-hCCCCEEEecCCCCC-c---------cc--cccCCCHHHHhhcCCEEEEe
Q 021388 141 KFTGKTVGIIGL---GRIGMAVAKRAE-AFSCPINYYSRTEKP-N---------LK--YKYYPSVVELASNCHILVVA 202 (313)
Q Consensus 141 ~l~g~~igiiG~---G~iG~~iA~~l~-~~G~~V~~~~~~~~~-~---------~~--~~~~~~l~e~~~~aDvV~~~ 202 (313)
.+.|++|+++|= +++..+++..+. .+|++|.+..|..-. . .+ .....++++.++++|+|..-
T Consensus 156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 488999999998 588888888766 459999888765421 1 01 22347899999999999873
No 408
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.10 E-value=0.15 Score=50.47 Aligned_cols=110 Identities=16% Similarity=0.212 Sum_probs=69.6
Q ss_pred ccccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----------cccccC--CCHHHHhhcCCEEEEecCCC
Q 021388 139 TTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----------LKYKYY--PSVVELASNCHILVVACPLT 206 (313)
Q Consensus 139 ~~~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----------~~~~~~--~~l~e~~~~aDvV~~~lp~~ 206 (313)
+..+.++++.|||.|.+|.++|+.|+..|++|.++|+..... .+.... ... +....+|+|+.+....
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~-~~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGP-TLPEDTDLVVTSPGWR 89 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc-cccCCCCEEEECCCcC
Confidence 345788999999999999999999999999999998654211 111111 111 1345689998876332
Q ss_pred hhhhc----------ccCH-HHH-hccCC----CcEEEEcCCCccccHHHHHHHHHhCC
Q 021388 207 EETRH----------IINR-EVI-DALGP----KGVLINIGRGPHVDERELVSALVEGR 249 (313)
Q Consensus 207 ~~t~~----------li~~-~~l-~~mk~----ga~lIn~~rg~~vd~~al~~al~~~~ 249 (313)
+.+.. ++++ +++ ..+.+ ..+-|--+.|......-+...|+...
T Consensus 90 ~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g 148 (480)
T PRK01438 90 PDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG 148 (480)
T ss_pred CCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence 22221 2322 333 23422 23556666788888888888887643
No 409
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=93.10 E-value=0.14 Score=51.70 Aligned_cols=37 Identities=11% Similarity=0.165 Sum_probs=32.5
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
-.|+++.|.|. |.||+.+++.|...|++|.+++|+.+
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~e 115 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQ 115 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 56789999986 99999999999999999999888654
No 410
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=93.07 E-value=0.55 Score=45.50 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=48.2
Q ss_pred ccCCCEEEEEcC-----C---hHHHHHHHHHHhCCCCEEEecCCCCC---c-----------cc--cccCCCHHHHhhcC
Q 021388 141 KFTGKTVGIIGL-----G---RIGMAVAKRAEAFSCPINYYSRTEKP---N-----------LK--YKYYPSVVELASNC 196 (313)
Q Consensus 141 ~l~g~~igiiG~-----G---~iG~~iA~~l~~~G~~V~~~~~~~~~---~-----------~~--~~~~~~l~e~~~~a 196 (313)
.+.|++|+|+|- | ++.++++..+..+|++|.+..|..-. . .+ .....++++.++.+
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 478999999985 5 57799999999999999988875321 1 01 22357899999999
Q ss_pred CEEEEec
Q 021388 197 HILVVAC 203 (313)
Q Consensus 197 DvV~~~l 203 (313)
|+|..-.
T Consensus 264 DvVYtd~ 270 (395)
T PRK07200 264 DIVYPKS 270 (395)
T ss_pred CEEEEcC
Confidence 9998764
No 411
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=93.06 E-value=0.35 Score=52.12 Aligned_cols=66 Identities=29% Similarity=0.344 Sum_probs=53.3
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc--------------------------cccc--------cC
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN--------------------------LKYK--------YY 186 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~--------------------------~~~~--------~~ 186 (313)
.-.|++|+|||-|..|-+.|..|...|+.|.+|.|+.... +|.. ..
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~ 1861 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH 1861 (2142)
T ss_pred cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc
Confidence 4589999999999999999999999999999998865420 1111 13
Q ss_pred CCHHHHhhcCCEEEEecCCC
Q 021388 187 PSVVELASNCHILVVACPLT 206 (313)
Q Consensus 187 ~~l~e~~~~aDvV~~~lp~~ 206 (313)
.+++++.+.-|.|+++...|
T Consensus 1862 vs~d~l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1862 VSLDELKKENDAIVLATGST 1881 (2142)
T ss_pred ccHHHHhhccCeEEEEeCCC
Confidence 57999999999999998654
No 412
>PRK10537 voltage-gated potassium channel; Provisional
Probab=92.89 E-value=0.32 Score=47.13 Aligned_cols=83 Identities=4% Similarity=-0.076 Sum_probs=52.0
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc---cccc----cCCC---HHH-HhhcCCEEEEecCCChhhhc
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN---LKYK----YYPS---VVE-LASNCHILVVACPLTEETRH 211 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~---~~~~----~~~~---l~e-~~~~aDvV~~~lp~~~~t~~ 211 (313)
...++-|+|+|.+|+.+++.|+..|.++.+.+.+.... .+.. ...+ +++ -+++|+.|+.+.+.++++..
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ 318 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGLEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAF 318 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCCCEEEEECchhhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHH
Confidence 35689999999999999999999999988877542211 1111 1122 222 25688888888876655443
Q ss_pred ccCHHHHhccCCCcEE
Q 021388 212 IINREVIDALGPKGVL 227 (313)
Q Consensus 212 li~~~~l~~mk~ga~l 227 (313)
+ ....+.+.|+..+
T Consensus 319 i--vL~ar~l~p~~kI 332 (393)
T PRK10537 319 V--VLAAKEMSSDVKT 332 (393)
T ss_pred H--HHHHHHhCCCCcE
Confidence 3 2334455554333
No 413
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=92.86 E-value=0.29 Score=46.55 Aligned_cols=85 Identities=19% Similarity=0.307 Sum_probs=58.9
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCCcc------ccccC----C-CH----HHHhh--cCCEEEEecCCC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKPNL------KYKYY----P-SV----VELAS--NCHILVVACPLT 206 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~~~------~~~~~----~-~l----~e~~~--~aDvV~~~lp~~ 206 (313)
.++.|+|.|.||.-.+..++.+|. +|++.|+++.+.. +.... . +. .++.. .+|+++-|.. .
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-~ 248 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-S 248 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-C
Confidence 399999999999999999999997 5778888765322 11111 1 11 12222 4899999887 3
Q ss_pred hhhhcccCHHHHhccCCCcEEEEcCCCc
Q 021388 207 EETRHIINREVIDALGPKGVLINIGRGP 234 (313)
Q Consensus 207 ~~t~~li~~~~l~~mk~ga~lIn~~rg~ 234 (313)
+.+ + .+.+...+++..++.+|-..
T Consensus 249 ~~~---~-~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 249 PPA---L-DQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred HHH---H-HHHHHHhcCCCEEEEEeccC
Confidence 322 2 56778889999988888653
No 414
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=92.85 E-value=0.36 Score=43.12 Aligned_cols=140 Identities=14% Similarity=0.130 Sum_probs=81.6
Q ss_pred CEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc----------------cc--------------cccCCCHHHHhh
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----------------LK--------------YKYYPSVVELAS 194 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~----------------~~--------------~~~~~~l~e~~~ 194 (313)
.+|||+|-|.+|++.|....+.|++|..||..++.. .+ .....+++|+.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk 83 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVK 83 (313)
T ss_pred cceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHh
Confidence 589999999999999999999999999999876521 01 112467888888
Q ss_pred cCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCccccHHHHHHHHHhCCeeEEEecCCCCCCCCCCcccCCCce
Q 021388 195 NCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENV 274 (313)
Q Consensus 195 ~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~vd~~al~~al~~~~l~ga~lDV~~~Ep~~~~~L~~~pnv 274 (313)
.|=.|-=|+|..-+-+.-+ -..+..+-....++..|+.......--.......+.. =++ |. .|-+-.|=|
T Consensus 84 ~Ai~iQEcvpE~L~lkk~l-y~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~l----vaH---Pv--NPPyfiPLv 153 (313)
T KOG2305|consen 84 GAIHIQECVPEDLNLKKQL-YKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCL----VAH---PV--NPPYFIPLV 153 (313)
T ss_pred hhhhHHhhchHhhHHHHHH-HHHHHHhcCCceEEeccccccChHHHhhhhhhhhhee----Eec---CC--CCCcccchh
Confidence 8877777777443333222 1223334445555665665544443333333333332 112 21 122224445
Q ss_pred EEccCCCCCcHHHHHHHHHHH
Q 021388 275 VLMPHVGSGTVETRKTMADLV 295 (313)
Q Consensus 275 ~lTPH~a~~t~~~~~~~~~~~ 295 (313)
=+-|| -|.+.++.++....+
T Consensus 154 ElVPa-PwTsp~tVdrt~~lM 173 (313)
T KOG2305|consen 154 ELVPA-PWTSPDTVDRTRALM 173 (313)
T ss_pred eeccC-CCCChhHHHHHHHHH
Confidence 56665 345556666655543
No 415
>PRK10206 putative oxidoreductase; Provisional
Probab=92.84 E-value=0.22 Score=47.34 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=42.4
Q ss_pred EEEEEcCChHHHH-HHHHHHh--CCCCEE-EecCCCCCcc-----c-cccCCCHHHHhh--cCCEEEEecCCChh
Q 021388 146 TVGIIGLGRIGMA-VAKRAEA--FSCPIN-YYSRTEKPNL-----K-YKYYPSVVELAS--NCHILVVACPLTEE 208 (313)
Q Consensus 146 ~igiiG~G~iG~~-iA~~l~~--~G~~V~-~~~~~~~~~~-----~-~~~~~~l~e~~~--~aDvV~~~lp~~~~ 208 (313)
++||||+|.+++. .+..+.. -++++. ++|++++... + ...+.+++++++ +.|+|++++|...+
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H 77 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH 77 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHH
Confidence 7999999998753 3454432 357765 6787653221 1 234578999995 57999999995543
No 416
>PRK08265 short chain dehydrogenase; Provisional
Probab=92.82 E-value=0.47 Score=42.68 Aligned_cols=38 Identities=24% Similarity=0.222 Sum_probs=33.7
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
.+.++++.|.|. |.||+.+|+.|...|++|++.+|+.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDAD 41 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 467899999986 89999999999999999999988754
No 417
>PLN02214 cinnamoyl-CoA reductase
Probab=92.81 E-value=0.33 Score=45.78 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=46.7
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc------------cccc-------cCCCHHHHhhcCCEEE
Q 021388 141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN------------LKYK-------YYPSVVELASNCHILV 200 (313)
Q Consensus 141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~------------~~~~-------~~~~l~e~~~~aDvV~ 200 (313)
.+.+++|.|.|. |.||+.+++.|...|++|.+..|+.+.. .... ...+++++++.+|+|+
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi 86 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF 86 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence 367899999997 9999999999999999999888754321 0010 1224566778899887
Q ss_pred EecC
Q 021388 201 VACP 204 (313)
Q Consensus 201 ~~lp 204 (313)
-+..
T Consensus 87 h~A~ 90 (342)
T PLN02214 87 HTAS 90 (342)
T ss_pred EecC
Confidence 6653
No 418
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=92.69 E-value=0.35 Score=46.84 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=50.9
Q ss_pred cCCCEEEEEcCC----------hHHHHHHHHHHhCCCCEEEecCCCCCcc--ccccCCCHHHHhhcCCEEEEecC
Q 021388 142 FTGKTVGIIGLG----------RIGMAVAKRAEAFSCPINYYSRTEKPNL--KYKYYPSVVELASNCHILVVACP 204 (313)
Q Consensus 142 l~g~~igiiG~G----------~iG~~iA~~l~~~G~~V~~~~~~~~~~~--~~~~~~~l~e~~~~aDvV~~~lp 204 (313)
..|++|+|+|+. +-+..+++.|...|.+|.+|||...... +.....++.++++.||+|++..-
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSFFNSRLERDLATFKQQADVIISNRM 368 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhhcCCeeeCCHHHHHHhCCEEEEcCC
Confidence 368999999994 3677899999999999999999754322 34456789999999999988764
No 419
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=92.61 E-value=0.26 Score=46.51 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=32.2
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCC
Q 021388 142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTE 177 (313)
Q Consensus 142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~ 177 (313)
+++++|.|.|. |-||+.+++.|...|.+|+++|+..
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 67789999985 9999999999999999999998743
No 420
>PRK08328 hypothetical protein; Provisional
Probab=92.59 E-value=0.16 Score=45.49 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=32.6
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRT 176 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~ 176 (313)
..|.+++|.|+|+|.+|..+++.|...|.. +..+|..
T Consensus 23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 458999999999999999999999999984 7777754
No 421
>PRK14852 hypothetical protein; Provisional
Probab=92.58 E-value=1.1 Score=48.09 Aligned_cols=155 Identities=13% Similarity=0.088 Sum_probs=90.9
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCC-------------Cccc-------------------cc---
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEK-------------PNLK-------------------YK--- 184 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~-------------~~~~-------------------~~--- 184 (313)
.|..++|+|+|+|.+|..+++.|...|. ++...|...- ...| ..
T Consensus 329 kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~ 408 (989)
T PRK14852 329 RLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP 408 (989)
T ss_pred HHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence 5899999999999999999999999998 4666653210 0000 00
Q ss_pred ---cCCCHHHHhhcCCEEEEecCCCh-hhhcccCHHHHhccCCCcEEEEcCCCc------------cccH---------H
Q 021388 185 ---YYPSVVELASNCHILVVACPLTE-ETRHIINREVIDALGPKGVLINIGRGP------------HVDE---------R 239 (313)
Q Consensus 185 ---~~~~l~e~~~~aDvV~~~lp~~~-~t~~li~~~~l~~mk~ga~lIn~~rg~------------~vd~---------~ 239 (313)
...+.+++++.+|+|+-++-... +.+..++.... +.+--+|..+-.+ .... .
T Consensus 409 ~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~---~~~IP~I~ag~~G~~g~v~v~~p~~~~~~~~f~~~~~~p 485 (989)
T PRK14852 409 EGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRAL---ELGIPVITAGPLGYSCALLVFMPGGMNFDSYFGIDDDTP 485 (989)
T ss_pred cCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHHH---HcCCCEEEeeccccCeeEEEEcCCCCCHHHhCCCCCCCc
Confidence 11356778888999888775321 23333333322 2333344443211 1100 0
Q ss_pred HHHHHHHhCCeeEEEecCCCCCCCCCC-cccCCCceEEccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 021388 240 ELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP 307 (313)
Q Consensus 240 al~~al~~~~l~ga~lDV~~~Ep~~~~-~L~~~pnv~lTPH~a~~t~~~~~~~~~~~~~nl~~~~~g~~ 307 (313)
.+...++ ..+ ...|.+-. ..++..+|-+.=+.+-.+.-+..-....+.....+++-|+.
T Consensus 486 ~~~~~~~------~~l---~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~ 545 (989)
T PRK14852 486 PMEGYLR------FGM---GLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRR 545 (989)
T ss_pred hHhhhhh------hhc---cCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCC
Confidence 1111111 011 11222111 23466677777788888888899999999999999998883
No 422
>PRK08374 homoserine dehydrogenase; Provisional
Probab=92.57 E-value=0.97 Score=42.86 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=66.2
Q ss_pred CEEEEEcCChHHHHHHHHHHh--------CC--CCEEE-ecCCCCC--cccc---------------c-c-------CCC
Q 021388 145 KTVGIIGLGRIGMAVAKRAEA--------FS--CPINY-YSRTEKP--NLKY---------------K-Y-------YPS 188 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~--------~G--~~V~~-~~~~~~~--~~~~---------------~-~-------~~~ 188 (313)
.+|+|+|+|++|+.+++.+.. +| .+|.+ .|++... +.+. . . ..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 479999999999999998876 67 45443 3433210 1110 0 0 115
Q ss_pred HHHHh--hcCCEEEEecCCChhhhcccCHHHHhccCCCcEEEEcCCCcc-ccHHHHHHHHHhCCee-EEEecCCCCCCC
Q 021388 189 VVELA--SNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPH-VDERELVSALVEGRLG-GAGLDVFENEPH 263 (313)
Q Consensus 189 l~e~~--~~aDvV~~~lp~~~~t~~li~~~~l~~mk~ga~lIn~~rg~~-vd~~al~~al~~~~l~-ga~lDV~~~Ep~ 263 (313)
.++++ ..+|+|+-+.+.. ... .-....++.|.-+|-...|.+ ...++|.+..++++.. .+.--|...-|.
T Consensus 83 ~~ell~~~~~DVvVd~t~~~-~a~----~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiPi 156 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDK-NAH----EWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTPI 156 (336)
T ss_pred HHHHHhcCCCCEEEECCCcH-HHH----HHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCCc
Confidence 67776 4799998777522 222 223445667777776666544 3556666666555443 233445555564
No 423
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.54 E-value=0.28 Score=46.90 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=43.3
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc----cC---CCHHHHhhcCCEEEEec
Q 021388 143 TGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK----YY---PSVVELASNCHILVVAC 203 (313)
Q Consensus 143 ~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~----~~---~~l~e~~~~aDvV~~~l 203 (313)
.+|+|.|.|. |.||+.+++.|...|++|.+.+|...... ... .. .++.+++.++|+|+-+.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 5689999987 99999999999999999999987543110 011 01 12344567899887654
No 424
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=92.54 E-value=0.59 Score=43.79 Aligned_cols=75 Identities=16% Similarity=0.252 Sum_probs=49.6
Q ss_pred EEEEEc-CChHHHHHHHHHHhCC-CCEEEecCCCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCHHHHhc-cC
Q 021388 146 TVGIIG-LGRIGMAVAKRAEAFS-CPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDA-LG 222 (313)
Q Consensus 146 ~igiiG-~G~iG~~iA~~l~~~G-~~V~~~~~~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~~~l~~-mk 222 (313)
+|+|+| -|-.|..+.++|.... +++.....+.. .. ..+.+++++++|++++++|... +. ++... .+
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----~~-~~~~~~~~~~~D~vFlalp~~~-s~-----~~~~~~~~ 71 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----KD-AAERAKLLNAADVAILCLPDDA-AR-----EAVSLVDN 71 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----cC-cCCHhHhhcCCCEEEECCCHHH-HH-----HHHHHHHh
Confidence 789997 5889999999998763 35544432221 11 1245677789999999999542 22 22222 24
Q ss_pred CCcEEEEcC
Q 021388 223 PKGVLINIG 231 (313)
Q Consensus 223 ~ga~lIn~~ 231 (313)
.|..+||.|
T Consensus 72 ~g~~VIDlS 80 (310)
T TIGR01851 72 PNTCIIDAS 80 (310)
T ss_pred CCCEEEECC
Confidence 688899988
No 425
>PRK12937 short chain dehydrogenase; Provisional
Probab=92.53 E-value=0.51 Score=41.53 Aligned_cols=35 Identities=23% Similarity=0.251 Sum_probs=30.2
Q ss_pred cCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCC
Q 021388 142 FTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRT 176 (313)
Q Consensus 142 l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~ 176 (313)
+.++++.|.| .|.+|+.+|+.|...|++|+...++
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~ 38 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAG 38 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCC
Confidence 6789999998 4999999999999999998776553
No 426
>PRK08628 short chain dehydrogenase; Provisional
Probab=92.52 E-value=0.32 Score=43.38 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=33.5
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 141 KFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 141 ~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
++.|+++.|.| .|.||+.+|+.|...|++|.+.++++.
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~ 42 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAP 42 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChh
Confidence 58899999998 578999999999999999998887654
No 427
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.46 E-value=0.46 Score=44.56 Aligned_cols=85 Identities=19% Similarity=0.236 Sum_probs=56.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc-----cccccCCCH-HHHhhcCCEEEEecCCChhhhcccCHH
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSV-VELASNCHILVVACPLTEETRHIINRE 216 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~-----~~~~~~~~l-~e~~~~aDvV~~~lp~~~~t~~li~~~ 216 (313)
.|.++.|.|.|.+|...++.++..|++|++.++++++. .++...-+. ++.....|+++.+.... . .+ ..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~~-~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---LV-PP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---HH-HH
Confidence 47899999999999999999999999999888776532 122111110 11112357666655432 1 22 55
Q ss_pred HHhccCCCcEEEEcCC
Q 021388 217 VIDALGPKGVLINIGR 232 (313)
Q Consensus 217 ~l~~mk~ga~lIn~~r 232 (313)
.++.++++..++.+|.
T Consensus 240 ~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 240 ALEALDRGGVLAVAGI 255 (329)
T ss_pred HHHhhCCCcEEEEEec
Confidence 7788899999888774
No 428
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=92.45 E-value=0.34 Score=43.19 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=33.8
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
.+.||++.|.|. |.||+.+++.|...|++|.+.+|+..
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~ 45 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPA 45 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 478999999985 89999999999999999999988754
No 429
>PRK06398 aldose dehydrogenase; Validated
Probab=92.43 E-value=0.57 Score=42.05 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=33.5
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
++.||++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcc
Confidence 478999999985 68999999999999999999988754
No 430
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=92.41 E-value=0.3 Score=44.01 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=30.6
Q ss_pred ccCCCEEEEEcC---ChHHHHHHHHHHhCCCCEEEecCC
Q 021388 141 KFTGKTVGIIGL---GRIGMAVAKRAEAFSCPINYYSRT 176 (313)
Q Consensus 141 ~l~g~~igiiG~---G~iG~~iA~~l~~~G~~V~~~~~~ 176 (313)
++.||++.|.|. +.||+++|+.+...|++|....++
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~ 41 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP 41 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence 367899999997 489999999999999998766543
No 431
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.40 E-value=0.29 Score=47.31 Aligned_cols=40 Identities=20% Similarity=0.215 Sum_probs=34.4
Q ss_pred ccccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 139 TTKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 139 ~~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
+....+++|.|+|. |.||+.+++.|...|++|.+++|+..
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~ 95 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKS 95 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechh
Confidence 34567889999985 99999999999999999999988653
No 432
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=92.40 E-value=0.79 Score=42.48 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=33.3
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTE 177 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~ 177 (313)
..|...+|.|+|+|.+|..+|+.|...|.+ +..+|...
T Consensus 15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ 53 (286)
T cd01491 15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKP 53 (286)
T ss_pred HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCc
Confidence 358899999999999999999999999985 88888643
No 433
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.38 E-value=0.37 Score=45.48 Aligned_cols=59 Identities=8% Similarity=0.021 Sum_probs=42.9
Q ss_pred EEEEEcC-ChHHHHHHHHHHhCC-------CCEEEecCCCCC--cccc----c-----------cCCCHHHHhhcCCEEE
Q 021388 146 TVGIIGL-GRIGMAVAKRAEAFS-------CPINYYSRTEKP--NLKY----K-----------YYPSVVELASNCHILV 200 (313)
Q Consensus 146 ~igiiG~-G~iG~~iA~~l~~~G-------~~V~~~~~~~~~--~~~~----~-----------~~~~l~e~~~~aDvV~ 200 (313)
+|+|+|. |.+|..++..|...+ .++..+|+.+.. ..+. . ...++.+.++.||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 6999999 999999999998744 479999985421 1110 0 1245668899999998
Q ss_pred EecC
Q 021388 201 VACP 204 (313)
Q Consensus 201 ~~lp 204 (313)
.+.-
T Consensus 84 ~tAG 87 (325)
T cd01336 84 LVGA 87 (325)
T ss_pred EeCC
Confidence 8763
No 434
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.37 E-value=1.2 Score=38.37 Aligned_cols=39 Identities=23% Similarity=0.307 Sum_probs=35.1
Q ss_pred cccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCC
Q 021388 140 TKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 140 ~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
..|.|+.+-+-|.|. ||+.+.+.|.+.|.+|+++.|.+.
T Consensus 3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a 42 (245)
T KOG1207|consen 3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEA 42 (245)
T ss_pred ccccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHH
Confidence 358899999999884 999999999999999999999875
No 435
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=92.28 E-value=0.47 Score=44.05 Aligned_cols=62 Identities=21% Similarity=0.134 Sum_probs=44.0
Q ss_pred CCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCc---------c----cc-------ccCCCHHHHhhcCCEEEE
Q 021388 143 TGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPN---------L----KY-------KYYPSVVELASNCHILVV 201 (313)
Q Consensus 143 ~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~---------~----~~-------~~~~~l~e~~~~aDvV~~ 201 (313)
.||++.|.| .|.||+.+++.|...|++|.+..++.... . .. ....+++++++..|+|+.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih 83 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH 83 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence 468999998 59999999999999999998776554311 0 01 112345667888998877
Q ss_pred ecC
Q 021388 202 ACP 204 (313)
Q Consensus 202 ~lp 204 (313)
+..
T Consensus 84 ~A~ 86 (325)
T PLN02989 84 TAS 86 (325)
T ss_pred eCC
Confidence 664
No 436
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.24 E-value=0.31 Score=43.69 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=32.4
Q ss_pred ccCCCEEEEEcCC---hHHHHHHHHHHhCCCCEEEecCC
Q 021388 141 KFTGKTVGIIGLG---RIGMAVAKRAEAFSCPINYYSRT 176 (313)
Q Consensus 141 ~l~g~~igiiG~G---~iG~~iA~~l~~~G~~V~~~~~~ 176 (313)
.+.||++.|.|.+ .||+++|+.|...|++|+..+|+
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~ 42 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN 42 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc
Confidence 4789999999985 79999999999999999988775
No 437
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=92.22 E-value=0.43 Score=44.81 Aligned_cols=63 Identities=8% Similarity=0.102 Sum_probs=49.2
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCc------------cc-cccCCCHHHHhhcCCEEEEec
Q 021388 141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPN------------LK-YKYYPSVVELASNCHILVVAC 203 (313)
Q Consensus 141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~------------~~-~~~~~~l~e~~~~aDvV~~~l 203 (313)
.+.|++|++||- +++.++++..+..+|++|.+..|..-.. .+ .....++++.++.+|+|..-.
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~ 226 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT 226 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence 378999999998 6899999999999999999888754210 01 122468999999999998743
No 438
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=92.12 E-value=0.48 Score=44.95 Aligned_cols=83 Identities=12% Similarity=0.231 Sum_probs=52.0
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHh--CCC-CEEEecCC--CCCcccc----ccCCCHHHH-hhcCCEEEEecCCChhhhc
Q 021388 143 TGKTVGIIGL-GRIGMAVAKRAEA--FSC-PINYYSRT--EKPNLKY----KYYPSVVEL-ASNCHILVVACPLTEETRH 211 (313)
Q Consensus 143 ~g~~igiiG~-G~iG~~iA~~l~~--~G~-~V~~~~~~--~~~~~~~----~~~~~l~e~-~~~aDvV~~~lp~~~~t~~ 211 (313)
.+.+|+|||. |..|+.+.+.|.. +-. ++..+... ..+...+ ....++++. +.++|++++++|...
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~---- 78 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREA---- 78 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHH----
Confidence 4568999997 9999999999988 432 45444322 2111111 111244443 378999999998442
Q ss_pred ccCHHHHhcc-CCCcEEEEcC
Q 021388 212 IINREVIDAL-GPKGVLINIG 231 (313)
Q Consensus 212 li~~~~l~~m-k~ga~lIn~~ 231 (313)
..++...+ +.|+.+||.|
T Consensus 79 --s~~~~~~~~~~g~~VIDlS 97 (336)
T PRK08040 79 --SAAYAEEATNAGCLVIDSS 97 (336)
T ss_pred --HHHHHHHHHHCCCEEEECC
Confidence 23333333 5789999998
No 439
>PRK14851 hypothetical protein; Provisional
Probab=92.09 E-value=0.37 Score=49.96 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=30.8
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEec
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYS 174 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~ 174 (313)
..|++++|+|+|+|.+|..++..|...|. ++...|
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD 74 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIAD 74 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEc
Confidence 45999999999999999999999999998 466665
No 440
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=92.08 E-value=0.38 Score=45.10 Aligned_cols=63 Identities=19% Similarity=0.178 Sum_probs=44.1
Q ss_pred CEEEEEcCChHHHHHHHHHHhC--CCCEEEecCCCCCcccc---------------ccCC-CHHHHhhcCCEEEEec--C
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAF--SCPINYYSRTEKPNLKY---------------KYYP-SVVELASNCHILVVAC--P 204 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~--G~~V~~~~~~~~~~~~~---------------~~~~-~l~e~~~~aDvV~~~l--p 204 (313)
++|+|||.|.+|+++|-.|... +-++..+|...+...+. .... .--+.++.||+|+++. |
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p 80 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP 80 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence 4899999999999999999644 44788999885433221 0011 1146688999999987 5
Q ss_pred CCh
Q 021388 205 LTE 207 (313)
Q Consensus 205 ~~~ 207 (313)
.-|
T Consensus 81 rKp 83 (313)
T COG0039 81 RKP 83 (313)
T ss_pred CCC
Confidence 444
No 441
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.08 E-value=0.76 Score=43.77 Aligned_cols=82 Identities=13% Similarity=0.285 Sum_probs=51.2
Q ss_pred CCCEEEEEcC-ChHHHHHHHHHHh-CCCC---EEEec-C-CCCCccccc----c--CCCHHHHhhcCCEEEEecCCChhh
Q 021388 143 TGKTVGIIGL-GRIGMAVAKRAEA-FSCP---INYYS-R-TEKPNLKYK----Y--YPSVVELASNCHILVVACPLTEET 209 (313)
Q Consensus 143 ~g~~igiiG~-G~iG~~iA~~l~~-~G~~---V~~~~-~-~~~~~~~~~----~--~~~l~e~~~~aDvV~~~lp~~~~t 209 (313)
.+.+|||||. |..|+.+.+.|.. -.+. +..+. . +..+...+. . ..+.++ +.+.|++++++|.. .+
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s 81 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VS 81 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HH
Confidence 3468999997 9999999999984 5565 43333 2 222221111 0 113333 47899999999844 22
Q ss_pred hcccCHHHHhc-cCCCcEEEEcC
Q 021388 210 RHIINREVIDA-LGPKGVLINIG 231 (313)
Q Consensus 210 ~~li~~~~l~~-mk~ga~lIn~~ 231 (313)
+++... .+.|+.+||.|
T Consensus 82 -----~~~~~~~~~~G~~VID~S 99 (347)
T PRK06728 82 -----RQFVNQAVSSGAIVIDNT 99 (347)
T ss_pred -----HHHHHHHHHCCCEEEECc
Confidence 333332 35789999988
No 442
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.08 E-value=0.37 Score=42.55 Aligned_cols=38 Identities=26% Similarity=0.386 Sum_probs=33.8
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
++.++++.|+|. |.+|+.+++.|...|++|++.+|++.
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~ 40 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEE 40 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 367899999985 89999999999999999999998764
No 443
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=92.08 E-value=0.18 Score=44.05 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=33.1
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRT 176 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~ 176 (313)
..|.+++|.|+|+|.+|..+++.|...|.. +..+|..
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 468999999999999999999999999985 7788754
No 444
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=92.02 E-value=0.67 Score=44.41 Aligned_cols=35 Identities=34% Similarity=0.608 Sum_probs=31.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCC
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~ 177 (313)
.|+++.|.|.|.+|..+++.++.+|.+|++.+++.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~ 212 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSS 212 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCCh
Confidence 57899999999999999999999999998887653
No 445
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=91.97 E-value=0.2 Score=43.77 Aligned_cols=37 Identities=27% Similarity=0.337 Sum_probs=32.7
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRT 176 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~ 176 (313)
..|.+++|.|+|+|.+|..+++.|...|.. +..+|..
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 458999999999999999999999999985 7787754
No 446
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.95 E-value=0.18 Score=47.00 Aligned_cols=37 Identities=35% Similarity=0.448 Sum_probs=34.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCCCCC
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRTEKP 179 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~~~~ 179 (313)
.|++++|.|+|.+|.++++-++++|+ ++++.|.++++
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~K 229 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDK 229 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHH
Confidence 68999999999999999999999998 79999988764
No 447
>PRK08324 short chain dehydrogenase; Validated
Probab=91.94 E-value=0.3 Score=50.72 Aligned_cols=39 Identities=31% Similarity=0.342 Sum_probs=34.8
Q ss_pred cccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 140 TKFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 140 ~~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
..+.|+++.|.| .|.||+.+++.|...|++|++.+++..
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~ 457 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEE 457 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHH
Confidence 347899999999 599999999999999999999998764
No 448
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.91 E-value=0.25 Score=48.34 Aligned_cols=107 Identities=18% Similarity=0.107 Sum_probs=66.9
Q ss_pred cCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc------ccccC--CCHHHHhhcCCEEEEecCCChhhhc--
Q 021388 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL------KYKYY--PSVVELASNCHILVVACPLTEETRH-- 211 (313)
Q Consensus 142 l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~------~~~~~--~~l~e~~~~aDvV~~~lp~~~~t~~-- 211 (313)
+.++++.|+|+|..|.+.++.|+..|++|.++|....... +.... ....+.++..|+|+. -|.-+....
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~-spgi~~~~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVA-SPGIALAHPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEE-CCCCCCCCHHH
Confidence 5688999999999999999999999999999996543210 11111 112234567887655 443322111
Q ss_pred ---------ccCH-HHHhcc-CCCcEEEEcCCCccccHHHHHHHHHhCC
Q 021388 212 ---------IINR-EVIDAL-GPKGVLINIGRGPHVDERELVSALVEGR 249 (313)
Q Consensus 212 ---------li~~-~~l~~m-k~ga~lIn~~rg~~vd~~al~~al~~~~ 249 (313)
++.+ +++..+ +...+-|--+.|......-+.+.|+...
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g 131 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAG 131 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 2222 344333 3234446666788888888888887643
No 449
>PRK06523 short chain dehydrogenase; Provisional
Probab=91.88 E-value=0.69 Score=41.29 Aligned_cols=39 Identities=21% Similarity=0.216 Sum_probs=34.3
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 140 TKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 140 ~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
.++.|+++.|.|. |.||+.+++.|...|++|++.+|+..
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~ 44 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRP 44 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChh
Confidence 4588999999985 89999999999999999999988654
No 450
>PRK15076 alpha-galactosidase; Provisional
Probab=91.87 E-value=0.16 Score=49.90 Aligned_cols=109 Identities=12% Similarity=0.068 Sum_probs=67.2
Q ss_pred CEEEEEcCChHHHHHHH--HH---HhC-CCCEEEecCCCCCcc-------------c----cccCCCHHHHhhcCCEEEE
Q 021388 145 KTVGIIGLGRIGMAVAK--RA---EAF-SCPINYYSRTEKPNL-------------K----YKYYPSVVELASNCHILVV 201 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~--~l---~~~-G~~V~~~~~~~~~~~-------------~----~~~~~~l~e~~~~aDvV~~ 201 (313)
++|+|||.|++|...+- .+ .++ |.+|..+|..++... + .....++.+.++.||+|+.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 58999999999955433 22 233 458999998765321 0 1224577899999999999
Q ss_pred ecCCC--hhhh-----------------cc----------cC-------HHHHhccCCCcEEEEcCCCccccHHHHHHHH
Q 021388 202 ACPLT--EETR-----------------HI----------IN-------REVIDALGPKGVLINIGRGPHVDERELVSAL 245 (313)
Q Consensus 202 ~lp~~--~~t~-----------------~l----------i~-------~~~l~~mk~ga~lIn~~rg~~vd~~al~~al 245 (313)
+.-.. +.-+ .. -+ .+.+....|++++||.+...-+-..++. -+
T Consensus 82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~ 160 (431)
T PRK15076 82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY 160 (431)
T ss_pred eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence 98542 1110 01 00 1223445689999999887655555665 23
Q ss_pred HhCCeeEEE
Q 021388 246 VEGRLGGAG 254 (313)
Q Consensus 246 ~~~~l~ga~ 254 (313)
...++.|.+
T Consensus 161 ~~~rviG~c 169 (431)
T PRK15076 161 PGIKTVGLC 169 (431)
T ss_pred CCCCEEEEC
Confidence 445566543
No 451
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=91.80 E-value=0.32 Score=44.87 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=43.8
Q ss_pred CEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCcc-----ccc-------cCCCHHHHhhcCCEEEEecC
Q 021388 145 KTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYK-------YYPSVVELASNCHILVVACP 204 (313)
Q Consensus 145 ~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~-------~~~~l~e~~~~aDvV~~~lp 204 (313)
+++.|.| .|.+|+.+++.|...|++|.+.+|+..... +.. ...++.++++.+|+|+.+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 4688898 599999999999999999999988654321 111 11245667888998877654
No 452
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=91.77 E-value=0.51 Score=44.80 Aligned_cols=79 Identities=18% Similarity=0.253 Sum_probs=48.9
Q ss_pred EEEEEc-CChHHHHHHHHHHhCCCCE---EEecCCCC--Ccccc---c-cC--CCHHHHhhcCCEEEEecCCChhhhccc
Q 021388 146 TVGIIG-LGRIGMAVAKRAEAFSCPI---NYYSRTEK--PNLKY---K-YY--PSVVELASNCHILVVACPLTEETRHII 213 (313)
Q Consensus 146 ~igiiG-~G~iG~~iA~~l~~~G~~V---~~~~~~~~--~~~~~---~-~~--~~l~e~~~~aDvV~~~lp~~~~t~~li 213 (313)
+|+|+| .|.+|+.+++.|...|+.+ .++.+... +.... . .. .+. +.+.++|+|+.|+|... +.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~-~~~~~~D~v~~a~g~~~-s~--- 75 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKI-ESFEGIDIALFSAGGSV-SK--- 75 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCCh-HHhcCCCEEEECCCHHH-HH---
Confidence 479999 8999999999999877653 33333322 11111 0 11 122 33578999999998542 22
Q ss_pred CHHHHh-ccCCCcEEEEcC
Q 021388 214 NREVID-ALGPKGVLINIG 231 (313)
Q Consensus 214 ~~~~l~-~mk~ga~lIn~~ 231 (313)
+... .++.|+++||.+
T Consensus 76 --~~a~~~~~~G~~VID~s 92 (339)
T TIGR01296 76 --EFAPKAAKCGAIVIDNT 92 (339)
T ss_pred --HHHHHHHHCCCEEEECC
Confidence 2222 235688899887
No 453
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=91.76 E-value=0.66 Score=43.34 Aligned_cols=85 Identities=21% Similarity=0.368 Sum_probs=54.1
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc---CCC---HHHHhhcCCEEEEecCCChhhhc
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY---YPS---VVELASNCHILVVACPLTEETRH 211 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~---~~~---l~e~~~~aDvV~~~lp~~~~t~~ 211 (313)
.|.++.|.|.|.+|+.+++.++.+|++|++.+++.+... +... ..+ ..+.-...|+++-+.+...
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~---- 244 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH---- 244 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc----
Confidence 467899999999999999999999999998887653211 1110 000 1112244677776665321
Q ss_pred ccCHHHHhccCCCcEEEEcCC
Q 021388 212 IINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 212 li~~~~l~~mk~ga~lIn~~r 232 (313)
...+.+..++++..+++++.
T Consensus 245 -~~~~~~~~l~~~G~~v~~g~ 264 (337)
T cd05283 245 -DLDPYLSLLKPGGTLVLVGA 264 (337)
T ss_pred -hHHHHHHHhcCCCEEEEEec
Confidence 12445666777777777664
No 454
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=91.75 E-value=1 Score=43.55 Aligned_cols=96 Identities=11% Similarity=0.092 Sum_probs=56.3
Q ss_pred CEEEEEcC-ChHHHHHHHHHHhCCC-C----E--EEe--cCCCCCccc---------------cccCCCHHHHhhcCCEE
Q 021388 145 KTVGIIGL-GRIGMAVAKRAEAFSC-P----I--NYY--SRTEKPNLK---------------YKYYPSVVELASNCHIL 199 (313)
Q Consensus 145 ~~igiiG~-G~iG~~iA~~l~~~G~-~----V--~~~--~~~~~~~~~---------------~~~~~~l~e~~~~aDvV 199 (313)
.+|+|||. |.+|..+|-.+...|. . | ..+ |+..+...+ .....+-.+.+++||+|
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIV 124 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWA 124 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEE
Confidence 58999999 9999999999976554 2 2 233 665543221 01112344778999999
Q ss_pred EEecCC--Ch-hhhc--------cc---CHHHHhccCCCcEEEEcCCCccccHHHHH
Q 021388 200 VVACPL--TE-ETRH--------II---NREVIDALGPKGVLINIGRGPHVDERELV 242 (313)
Q Consensus 200 ~~~lp~--~~-~t~~--------li---~~~~l~~mk~ga~lIn~~rg~~vd~~al~ 242 (313)
+++... .+ .++. ++ .....+.-++.+++|.++ +.+|.-..+
T Consensus 125 VitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVs--NPvDv~t~v 179 (387)
T TIGR01757 125 LLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVG--NPCNTNALI 179 (387)
T ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcC--CcHHHHHHH
Confidence 997632 22 1221 11 112222244788888876 445544433
No 455
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=91.71 E-value=1.5 Score=40.73 Aligned_cols=130 Identities=15% Similarity=0.219 Sum_probs=85.2
Q ss_pred CCCcCChhhh-hhcCcEEEcCCC---CChHHHHHHHHHHHHHHHhchhHHHHHHhcCCCCCCCcccccccCCCEEEEEcC
Q 021388 77 GLDKVDMVKC-KEKGVRVTNTPD---VLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGL 152 (313)
Q Consensus 77 G~d~id~~~~-~~~gI~v~n~~~---~~~~~vAE~al~~~L~~~r~~~~~~~~~~~~~w~~~~~~~~~~l~g~~igiiG~ 152 (313)
++.|-+++.. +..+|+|.|.=. .-...+|++. .+..+ .+. +.|++++.+|=
T Consensus 107 ~~~~~~ve~lA~~s~VPViNgLtD~~HP~Q~LADl~-----Ti~E~-------------------~g~-l~g~k~a~vGD 161 (310)
T COG0078 107 GFSHETLEELAKYSGVPVINGLTDEFHPCQALADLM-----TIKEH-------------------FGS-LKGLKLAYVGD 161 (310)
T ss_pred cccHHHHHHHHHhCCCceEcccccccCcHHHHHHHH-----HHHHh-------------------cCc-ccCcEEEEEcC
Confidence 3444455554 446899999632 2256666652 22111 122 89999999987
Q ss_pred C-hHHHHHHHHHHhCCCCEEEecCCCCCcc--------------c--cccCCCHHHHhhcCCEEEEecCCC--hhhh---
Q 021388 153 G-RIGMAVAKRAEAFSCPINYYSRTEKPNL--------------K--YKYYPSVVELASNCHILVVACPLT--EETR--- 210 (313)
Q Consensus 153 G-~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------------~--~~~~~~l~e~~~~aDvV~~~lp~~--~~t~--- 210 (313)
| +|+.++......+||+|.+..|..-... | .....+.++.++.+|+|..=+... +..+
T Consensus 162 gNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvWvSMGee~e~~~ 241 (310)
T COG0078 162 GNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVWVSMGEEAEAEE 241 (310)
T ss_pred cchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCcccCcchhhhHH
Confidence 6 6899999999999999988776442110 1 234568999999999998776432 1111
Q ss_pred --------cccCHHHHhccCCCcEEEEcC
Q 021388 211 --------HIINREVIDALGPKGVLINIG 231 (313)
Q Consensus 211 --------~li~~~~l~~mk~ga~lIn~~ 231 (313)
.-+|++.++.-+++++|.-|-
T Consensus 242 ~~~~~~~~yQVn~~lm~~a~~~~ifmHCL 270 (310)
T COG0078 242 RRIAFLPPYQVNEELMALAGPDAIFMHCL 270 (310)
T ss_pred HHHhhCCCceeCHHHHhhcCCCeEEEeCC
Confidence 345677777777777777764
No 456
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=91.60 E-value=0.74 Score=43.82 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=49.1
Q ss_pred CEEEEEc-CChHHHHHHHHHHhCCC-CEEEecCCCC---Cccc----c-------------cc-CCCHHHHhhcCCEEEE
Q 021388 145 KTVGIIG-LGRIGMAVAKRAEAFSC-PINYYSRTEK---PNLK----Y-------------KY-YPSVVELASNCHILVV 201 (313)
Q Consensus 145 ~~igiiG-~G~iG~~iA~~l~~~G~-~V~~~~~~~~---~~~~----~-------------~~-~~~l~e~~~~aDvV~~ 201 (313)
.+|+|+| .|.+|+.+++.|..+.. ++.++.++.. .... . .. ..+.++ +.++|+|+.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEEE
Confidence 6899998 99999999999987643 7776622221 1110 0 00 113333 478999999
Q ss_pred ecCCChhhhcccCHHHHhcc-CCCcEEEEcC
Q 021388 202 ACPLTEETRHIINREVIDAL-GPKGVLINIG 231 (313)
Q Consensus 202 ~lp~~~~t~~li~~~~l~~m-k~ga~lIn~~ 231 (313)
++|.... .+....+ +.|..+|+.+
T Consensus 83 a~p~~~s------~~~~~~~~~~G~~vIDls 107 (349)
T PRK08664 83 ALPSDVA------GEVEEEFAKAGKPVFSNA 107 (349)
T ss_pred eCChhHH------HHHHHHHHHCCCEEEECC
Confidence 9985432 2222322 4577677766
No 457
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=91.59 E-value=1 Score=45.20 Aligned_cols=91 Identities=13% Similarity=0.094 Sum_probs=64.4
Q ss_pred ccCCCEEEEEcC---ChHHHHHHHHHHhCC-CCEEEecCCCCC-cc---------c--cccCCCHHHHhhcCCEE--EE-
Q 021388 141 KFTGKTVGIIGL---GRIGMAVAKRAEAFS-CPINYYSRTEKP-NL---------K--YKYYPSVVELASNCHIL--VV- 201 (313)
Q Consensus 141 ~l~g~~igiiG~---G~iG~~iA~~l~~~G-~~V~~~~~~~~~-~~---------~--~~~~~~l~e~~~~aDvV--~~- 201 (313)
.+.|++|+++|= |++.++++..+..|| ++|.+..+..-. .. + .....++++.++++|+. +.
T Consensus 171 ~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw~~ 250 (525)
T PRK13376 171 DNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIWYF 250 (525)
T ss_pred CcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceEEE
Confidence 478999999998 589999999999998 899888764421 11 2 22357899999999952 23
Q ss_pred ------ecCCC--h---h--hhcccCHHHHhccCCCcEEEEcC
Q 021388 202 ------ACPLT--E---E--TRHIINREVIDALGPKGVLINIG 231 (313)
Q Consensus 202 ------~lp~~--~---~--t~~li~~~~l~~mk~ga~lIn~~ 231 (313)
..+.. + . -...++++.++.+|++++|.-+.
T Consensus 251 ~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 251 TRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred eccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 12211 0 0 12346889999999999888766
No 458
>PRK05865 hypothetical protein; Provisional
Probab=91.58 E-value=0.86 Score=48.48 Aligned_cols=90 Identities=12% Similarity=0.171 Sum_probs=56.4
Q ss_pred CEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc--ccc-------cCCCHHHHhhcCCEEEEecCCChhh--hcc
Q 021388 145 KTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL--KYK-------YYPSVVELASNCHILVVACPLTEET--RHI 212 (313)
Q Consensus 145 ~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--~~~-------~~~~l~e~~~~aDvV~~~lp~~~~t--~~l 212 (313)
++|.|.|. |.||+.+++.|...|++|.+++++..... ... ...++.++++.+|+|+.+....... .++
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~~~~vNv 80 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDSWPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGRNDHINI 80 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhhcccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccchHHHHH
Confidence 46889985 99999999999999999999988643211 111 1224556788899987766432110 011
Q ss_pred c-CHHHHhccCCC--cEEEEcCCCc
Q 021388 213 I-NREVIDALGPK--GVLINIGRGP 234 (313)
Q Consensus 213 i-~~~~l~~mk~g--a~lIn~~rg~ 234 (313)
. ....++.|+.. ..+|.+|...
T Consensus 81 ~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 81 DGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCcH
Confidence 1 12344445432 3688888765
No 459
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=91.56 E-value=0.45 Score=44.96 Aligned_cols=29 Identities=28% Similarity=0.339 Sum_probs=23.5
Q ss_pred EEEEEcCChHHHHHHHHHHhCC----CCEEEec
Q 021388 146 TVGIIGLGRIGMAVAKRAEAFS----CPINYYS 174 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~G----~~V~~~~ 174 (313)
+|||+|+|+||+.+.+.+...+ ++|...+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaIn 33 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALN 33 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 4899999999999999987653 6776554
No 460
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=91.53 E-value=0.39 Score=45.37 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=34.2
Q ss_pred ccccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCC
Q 021388 139 TTKFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTE 177 (313)
Q Consensus 139 ~~~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~ 177 (313)
+++.++++|.|.| .|.||+.+++.|...|++|.+.++..
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~ 44 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDP 44 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 5677899999998 69999999999999999999877654
No 461
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=91.49 E-value=0.77 Score=42.84 Aligned_cols=85 Identities=22% Similarity=0.305 Sum_probs=54.5
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCCCc-----ccccc---C--CCHH---HHhh--cCCEEEEecCCC
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEKPN-----LKYKY---Y--PSVV---ELAS--NCHILVVACPLT 206 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~~~-----~~~~~---~--~~l~---e~~~--~aDvV~~~lp~~ 206 (313)
.|.++.|+|.|.+|...++.++.+|++ |++.++++++. .++.. . .+.+ ++.. ..|+|+-+....
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~ 242 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNT 242 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCH
Confidence 488999999999999999999999999 99888765421 11110 0 1111 2222 467777665422
Q ss_pred hhhhcccCHHHHhccCCCcEEEEcCC
Q 021388 207 EETRHIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 207 ~~t~~li~~~~l~~mk~ga~lIn~~r 232 (313)
. . + ...+..++++..++..|.
T Consensus 243 ~-~---~-~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 243 A-A---R-RLALEAVRPWGRLVLVGE 263 (339)
T ss_pred H-H---H-HHHHHHhhcCCEEEEEcC
Confidence 1 1 1 344666777777777664
No 462
>PRK06197 short chain dehydrogenase; Provisional
Probab=91.42 E-value=0.48 Score=43.73 Aligned_cols=49 Identities=18% Similarity=0.288 Sum_probs=38.2
Q ss_pred hcCCCCCCCcccccccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 127 RSGKWKKGDYKLTTKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 127 ~~~~w~~~~~~~~~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
+.+.|...+. .++.|+++.|.|. |.||+.+|+.|...|++|++.+|+..
T Consensus 2 ~~~~~~~~~~---~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~ 51 (306)
T PRK06197 2 KMTKWTAADI---PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLD 51 (306)
T ss_pred CCCCCCcccc---ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 3456653222 3689999999985 89999999999999999988887643
No 463
>PRK07825 short chain dehydrogenase; Provisional
Probab=91.41 E-value=0.52 Score=42.51 Aligned_cols=38 Identities=29% Similarity=0.376 Sum_probs=33.0
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
++.|+++.|.|. |.||+.+++.|...|++|.+.+|+++
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~ 40 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEA 40 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence 367889999986 88999999999999999999887653
No 464
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=91.41 E-value=0.36 Score=43.79 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=40.9
Q ss_pred EEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCCccccccCCCHHHHhhcC--CEEEEecC
Q 021388 146 TVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNC--HILVVACP 204 (313)
Q Consensus 146 ~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~~~~~~~l~e~~~~a--DvV~~~lp 204 (313)
+|.|+| .|.+|+.+++.|...|++|.+.+|... ......++.++++.. |+|+.+..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~---d~~~~~~~~~~~~~~~~d~vi~~a~ 59 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL---DLTDPEALERLLRAIRPDAVVNTAA 59 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc---CCCCHHHHHHHHHhCCCCEEEECCc
Confidence 367888 499999999999999999999988621 111223456667655 99877664
No 465
>PLN02427 UDP-apiose/xylose synthase
Probab=91.39 E-value=0.45 Score=45.52 Aligned_cols=65 Identities=11% Similarity=0.053 Sum_probs=45.4
Q ss_pred ccccCCCEEEEEc-CChHHHHHHHHHHhC-CCCEEEecCCCCCc-----c-------ccc-------cCCCHHHHhhcCC
Q 021388 139 TTKFTGKTVGIIG-LGRIGMAVAKRAEAF-SCPINYYSRTEKPN-----L-------KYK-------YYPSVVELASNCH 197 (313)
Q Consensus 139 ~~~l~g~~igiiG-~G~iG~~iA~~l~~~-G~~V~~~~~~~~~~-----~-------~~~-------~~~~l~e~~~~aD 197 (313)
|..+..++|.|.| .|-||+.+++.|... |++|.+++++.... . ... ....+.++++.+|
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d 88 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD 88 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence 4456778999998 599999999999987 58999998754310 0 011 1123566788899
Q ss_pred EEEEec
Q 021388 198 ILVVAC 203 (313)
Q Consensus 198 vV~~~l 203 (313)
+|+-+.
T Consensus 89 ~ViHlA 94 (386)
T PLN02427 89 LTINLA 94 (386)
T ss_pred EEEEcc
Confidence 876544
No 466
>PRK06196 oxidoreductase; Provisional
Probab=91.31 E-value=0.59 Score=43.41 Aligned_cols=38 Identities=16% Similarity=0.253 Sum_probs=33.6
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
.+.|+++.|.|. |.||+.+++.|...|++|++.+|+.+
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~ 61 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPD 61 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 468899999987 78999999999999999999988754
No 467
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.29 E-value=1.3 Score=43.44 Aligned_cols=107 Identities=18% Similarity=0.242 Sum_probs=65.9
Q ss_pred cCC-CEEEEEcCChHHHHHHHHHHhC--CCCEEEecCCCCCc----c--cccc--C-CCHHHHhhcCCEEEEecCC---C
Q 021388 142 FTG-KTVGIIGLGRIGMAVAKRAEAF--SCPINYYSRTEKPN----L--KYKY--Y-PSVVELASNCHILVVACPL---T 206 (313)
Q Consensus 142 l~g-~~igiiG~G~iG~~iA~~l~~~--G~~V~~~~~~~~~~----~--~~~~--~-~~l~e~~~~aDvV~~~lp~---~ 206 (313)
+++ +++.|||+|..|.+.++.|... |++|.++|...... . +... - .+. +.+.++|+|+..-.- .
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~-~~~~~~d~vV~SpgI~~~~ 82 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNL-EWLLEADLVVTNPGIALAT 82 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCCh-HHhccCCEEEECCCCCCCC
Confidence 455 7899999999999999999877 58899999654321 0 2111 1 122 345789988765422 2
Q ss_pred hhhh-------cccCH-HHHhc-cCCCcEEEEcCCCccccHHHHHHHHHhCC
Q 021388 207 EETR-------HIINR-EVIDA-LGPKGVLINIGRGPHVDERELVSALVEGR 249 (313)
Q Consensus 207 ~~t~-------~li~~-~~l~~-mk~ga~lIn~~rg~~vd~~al~~al~~~~ 249 (313)
|... .++.+ +++.. ++...+-|--+-|+.....-+...|+...
T Consensus 83 p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g 134 (438)
T PRK04663 83 PEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAG 134 (438)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCC
Confidence 2211 12222 33333 34334456666788888888888887644
No 468
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.25 E-value=0.4 Score=43.12 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=32.7
Q ss_pred ccCCCEEEEEcC---ChHHHHHHHHHHhCCCCEEEecCCC
Q 021388 141 KFTGKTVGIIGL---GRIGMAVAKRAEAFSCPINYYSRTE 177 (313)
Q Consensus 141 ~l~g~~igiiG~---G~iG~~iA~~l~~~G~~V~~~~~~~ 177 (313)
.+.||++.|.|. +.||.++|+.|...|++|+..+|+.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~ 43 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR 43 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence 378899999996 7999999999999999999887653
No 469
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=91.23 E-value=0.33 Score=47.23 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=46.1
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc--------cc-------ccCCCHHHHhhcCCEEEEec
Q 021388 141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL--------KY-------KYYPSVVELASNCHILVVAC 203 (313)
Q Consensus 141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~--------~~-------~~~~~l~e~~~~aDvV~~~l 203 (313)
.+.||++.|.|. |.||+++++.+...|++|.+.+++.+... .. ....++.+.+.+.|+++.+.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA 253 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH 253 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence 578999999987 89999999999999999998887653210 00 01123445677899998765
No 470
>PRK08264 short chain dehydrogenase; Validated
Probab=91.22 E-value=0.51 Score=41.48 Aligned_cols=39 Identities=23% Similarity=0.245 Sum_probs=33.8
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHHhCCC-CEEEecCCCCC
Q 021388 141 KFTGKTVGIIG-LGRIGMAVAKRAEAFSC-PINYYSRTEKP 179 (313)
Q Consensus 141 ~l~g~~igiiG-~G~iG~~iA~~l~~~G~-~V~~~~~~~~~ 179 (313)
++.++++.|+| .|.+|+.+|+.|...|+ +|+..+|+.+.
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~ 43 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES 43 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh
Confidence 36788999998 59999999999999999 99999887653
No 471
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=91.18 E-value=1.6 Score=41.40 Aligned_cols=62 Identities=5% Similarity=-0.056 Sum_probs=45.8
Q ss_pred c-CCCEEEEEcCC-------hHHHHHHHHHHhCCCCEEEecC-CCCCc--------------cc--cccCCCHHHHhhcC
Q 021388 142 F-TGKTVGIIGLG-------RIGMAVAKRAEAFSCPINYYSR-TEKPN--------------LK--YKYYPSVVELASNC 196 (313)
Q Consensus 142 l-~g~~igiiG~G-------~iG~~iA~~l~~~G~~V~~~~~-~~~~~--------------~~--~~~~~~l~e~~~~a 196 (313)
+ .|++|+|+|.| ++.++++..+..+|++|.+..| ..-.. .+ .....++++.++++
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a 245 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA 245 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 5 68899776533 7889999999999999999888 32110 01 12357889999999
Q ss_pred CEEEEec
Q 021388 197 HILVVAC 203 (313)
Q Consensus 197 DvV~~~l 203 (313)
|+|..-.
T Consensus 246 Dvvy~~~ 252 (335)
T PRK04523 246 DVVYAKS 252 (335)
T ss_pred CEEEece
Confidence 9998754
No 472
>PRK08589 short chain dehydrogenase; Validated
Probab=91.12 E-value=0.45 Score=43.12 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=32.4
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCC
Q 021388 141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRT 176 (313)
Q Consensus 141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~ 176 (313)
.+.||++.|.|. |.||+.+|+.|...|++|++.+|+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~ 39 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA 39 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 367899999987 789999999999999999999886
No 473
>PRK12367 short chain dehydrogenase; Provisional
Probab=91.07 E-value=0.39 Score=43.17 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=46.4
Q ss_pred cccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCCCcc-----c----cc-cC---CCHHHHhhcCCEEEEecC
Q 021388 140 TKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNL-----K----YK-YY---PSVVELASNCHILVVACP 204 (313)
Q Consensus 140 ~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~----~~-~~---~~l~e~~~~aDvV~~~lp 204 (313)
..+.|+++.|.|. |.||+.+|+.+...|++|++.+|+..... . .. .. .++++.+...|+++.+..
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG 88 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHG 88 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCc
Confidence 3578999999986 68999999999999999998887652110 0 00 11 233456678999988764
No 474
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.06 E-value=1 Score=40.51 Aligned_cols=37 Identities=16% Similarity=0.270 Sum_probs=32.8
Q ss_pred ccCCCEEEEEcCC---hHHHHHHHHHHhCCCCEEEecCCC
Q 021388 141 KFTGKTVGIIGLG---RIGMAVAKRAEAFSCPINYYSRTE 177 (313)
Q Consensus 141 ~l~g~~igiiG~G---~iG~~iA~~l~~~G~~V~~~~~~~ 177 (313)
++.||++.|.|.+ .||+++|+.+...|++|+..+++.
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~ 46 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLND 46 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCh
Confidence 4789999999986 799999999999999998887764
No 475
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=90.99 E-value=0.94 Score=40.75 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=57.8
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCC-EEEecCCCCCcc-----c-cccCCCHH-HH--hhcCCEEEEecCCChhhhcc
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCP-INYYSRTEKPNL-----K-YKYYPSVV-EL--ASNCHILVVACPLTEETRHI 212 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~-V~~~~~~~~~~~-----~-~~~~~~l~-e~--~~~aDvV~~~lp~~~~t~~l 212 (313)
.|.++.|.|.|.+|..+++.++..|.+ |++.+++.++.. + ........ .. -...|+++.++.... .
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----~ 172 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----A 172 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH----H
Confidence 568999999999999999999999999 888876543211 1 01000011 11 134788877665322 1
Q ss_pred cCHHHHhccCCCcEEEEcCCCc
Q 021388 213 INREVIDALGPKGVLINIGRGP 234 (313)
Q Consensus 213 i~~~~l~~mk~ga~lIn~~rg~ 234 (313)
-...+..++++..+++++-.+
T Consensus 173 -~~~~~~~l~~~g~~~~~g~~~ 193 (277)
T cd08255 173 -LETALRLLRDRGRVVLVGWYG 193 (277)
T ss_pred -HHHHHHHhcCCcEEEEEeccC
Confidence 255677889999999887543
No 476
>PRK06153 hypothetical protein; Provisional
Probab=90.98 E-value=0.26 Score=47.48 Aligned_cols=35 Identities=26% Similarity=0.483 Sum_probs=31.7
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecC
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSR 175 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~ 175 (313)
.|++++|+|||+|.+|..++..|.+.|. ++..+|.
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~ 208 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDG 208 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECC
Confidence 5899999999999999999999999998 5777774
No 477
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=90.95 E-value=0.4 Score=45.79 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=41.5
Q ss_pred EEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCccc--c-----ccCCC---HHHHhh--cCCEEEEe
Q 021388 146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK--Y-----KYYPS---VVELAS--NCHILVVA 202 (313)
Q Consensus 146 ~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~~--~-----~~~~~---l~e~~~--~aDvV~~~ 202 (313)
+|+|||-|..|..+++.++.+|++|+++|+++..... + ....+ +.++++ ++|+|+..
T Consensus 1 kililG~g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~~id~v~~~ 69 (380)
T TIGR01142 1 RVLLLGSGELGKEVAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVINMLDGDALRAVIEREKPDYIVPE 69 (380)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhhhCceEEEcCCCCHHHHHHHHHHhCCCEEEec
Confidence 5899999999999999999999999999987653221 0 01223 444555 68888653
No 478
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=90.87 E-value=0.32 Score=43.62 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=31.6
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT 176 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~ 176 (313)
.|++++|.|+|+|.+|..+++.|...|. ++..+|..
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4889999999999999999999999998 57777743
No 479
>PRK05717 oxidoreductase; Validated
Probab=90.85 E-value=0.61 Score=41.61 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=33.2
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCC
Q 021388 141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTE 177 (313)
Q Consensus 141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~ 177 (313)
.+.||++.|.|. |.||+.+|+.|...|++|+..+++.
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~ 44 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR 44 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH
Confidence 588999999985 8999999999999999999988764
No 480
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=90.82 E-value=1 Score=41.58 Aligned_cols=85 Identities=15% Similarity=0.225 Sum_probs=55.9
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCcc-----cccc---CC--CH-HHHhhcCCEEEEecCCChhhhc
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL-----KYKY---YP--SV-VELASNCHILVVACPLTEETRH 211 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~~-----~~~~---~~--~l-~e~~~~aDvV~~~lp~~~~t~~ 211 (313)
.|.+|.|.|.|.+|+.+++.++..|++|++.+++.+... +... .. +. .......|+++-++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~---- 237 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA---- 237 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence 467899999999999999999999999998887654211 1110 00 11 111235788876654221
Q ss_pred ccCHHHHhccCCCcEEEEcCC
Q 021388 212 IINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 212 li~~~~l~~mk~ga~lIn~~r 232 (313)
...+.+..|+++..+++++.
T Consensus 238 -~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 238 -AAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred -HHHHHHHhcccCCEEEEECC
Confidence 12556778888888888764
No 481
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=90.74 E-value=0.91 Score=40.70 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=32.4
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
+.++++.|.|. |.||+.+++.|...|++|++.+|+.+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 40 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAA 40 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 67899999986 68999999999999999999888653
No 482
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=90.49 E-value=0.35 Score=45.08 Aligned_cols=83 Identities=18% Similarity=0.189 Sum_probs=53.3
Q ss_pred EEcCChHHHHHHHHHHhCCC--CEEEecCCCCCccc---------------cccCCCHHHHhhcCCEEEEecCC--Ch-h
Q 021388 149 IIGLGRIGMAVAKRAEAFSC--PINYYSRTEKPNLK---------------YKYYPSVVELASNCHILVVACPL--TE-E 208 (313)
Q Consensus 149 iiG~G~iG~~iA~~l~~~G~--~V~~~~~~~~~~~~---------------~~~~~~l~e~~~~aDvV~~~lp~--~~-~ 208 (313)
|||.|.+|..+|-.|...+. ++..+|+..+...+ .....+-.+.+++||+|+++.-. .+ .
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence 68999999999999987676 58899987653221 01112334678999999997643 11 1
Q ss_pred hhc-cc--C-------HHHHhccCCCcEEEEcC
Q 021388 209 TRH-II--N-------REVIDALGPKGVLINIG 231 (313)
Q Consensus 209 t~~-li--~-------~~~l~~mk~ga~lIn~~ 231 (313)
++. ++ | ...+....|.+++++++
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 113 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT 113 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 111 11 1 12233356889999887
No 483
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.42 E-value=1.3 Score=39.83 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=31.9
Q ss_pred ccCCCEEEEEcC---ChHHHHHHHHHHhCCCCEEEecCC
Q 021388 141 KFTGKTVGIIGL---GRIGMAVAKRAEAFSCPINYYSRT 176 (313)
Q Consensus 141 ~l~g~~igiiG~---G~iG~~iA~~l~~~G~~V~~~~~~ 176 (313)
.+.||++.|.|. +.||+++|+.|...|++|+..+|+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~ 42 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAG 42 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCc
Confidence 478899999997 489999999999999999887764
No 484
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=90.35 E-value=1.3 Score=39.68 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=34.0
Q ss_pred ccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCCCCC
Q 021388 141 KFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRTEKP 179 (313)
Q Consensus 141 ~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~~~~ 179 (313)
.+.+|++.|.| .|.||+.+++.|...|++|...+++...
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~ 45 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGD 45 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 47899999998 5899999999999999999998876543
No 485
>PRK05866 short chain dehydrogenase; Provisional
Probab=90.30 E-value=0.51 Score=43.49 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=35.3
Q ss_pred ccccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 139 TTKFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 139 ~~~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
+..+.|+++.|.|. |.||+.+|+.|...|++|++.+|+.+
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~ 75 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARRED 75 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 45688999999986 89999999999999999999998753
No 486
>PRK08862 short chain dehydrogenase; Provisional
Probab=90.25 E-value=0.56 Score=41.56 Aligned_cols=38 Identities=8% Similarity=0.203 Sum_probs=33.4
Q ss_pred ccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecCCCC
Q 021388 141 KFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 141 ~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
++.|+++.|.|.+. ||+++|+.|...|++|...+|+.+
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~ 40 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQS 40 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 46789999998776 999999999999999999988654
No 487
>PRK06128 oxidoreductase; Provisional
Probab=90.25 E-value=0.44 Score=43.91 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=31.0
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCC
Q 021388 141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRT 176 (313)
Q Consensus 141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~ 176 (313)
.+.||++.|.|. |.||+.+|+.|...|++|.+..++
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~ 88 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLP 88 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 478999999985 889999999999999998876554
No 488
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=90.25 E-value=0.58 Score=43.78 Aligned_cols=62 Identities=24% Similarity=0.207 Sum_probs=43.4
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHHhCC--CCEEEecCCCCCc---------cccc-------cCCCHHHHhhcCCEEEEe
Q 021388 142 FTGKTVGIIGL-GRIGMAVAKRAEAFS--CPINYYSRTEKPN---------LKYK-------YYPSVVELASNCHILVVA 202 (313)
Q Consensus 142 l~g~~igiiG~-G~iG~~iA~~l~~~G--~~V~~~~~~~~~~---------~~~~-------~~~~l~e~~~~aDvV~~~ 202 (313)
+.|+++.|.|. |.||+.+++.|.+.| .+|.+++++.... .... ...++.++++..|+|+.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 46889999985 999999999998876 6899888754321 0111 112355677889998765
Q ss_pred c
Q 021388 203 C 203 (313)
Q Consensus 203 l 203 (313)
.
T Consensus 82 A 82 (324)
T TIGR03589 82 A 82 (324)
T ss_pred c
Confidence 4
No 489
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=90.20 E-value=0.7 Score=43.79 Aligned_cols=85 Identities=25% Similarity=0.348 Sum_probs=56.6
Q ss_pred CCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCCCCCc------ccccc---CCC---HHHHhhcCCEEEEecCCChhhh
Q 021388 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN------LKYKY---YPS---VVELASNCHILVVACPLTEETR 210 (313)
Q Consensus 143 ~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~~~~~------~~~~~---~~~---l~e~~~~aDvV~~~lp~~~~t~ 210 (313)
.|.++.|.|.|.+|..+++.++..|.+|++.+++.++. .++.. ..+ +.+.....|+++-+++....
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~-- 257 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHP-- 257 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHH--
Confidence 57889999999999999999999999988777654321 22211 111 22233346888877653211
Q ss_pred cccCHHHHhccCCCcEEEEcCC
Q 021388 211 HIINREVIDALGPKGVLINIGR 232 (313)
Q Consensus 211 ~li~~~~l~~mk~ga~lIn~~r 232 (313)
+ ...+..++++..++.+|.
T Consensus 258 --~-~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 258 --L-EPYLSLLKLDGKLILMGV 276 (357)
T ss_pred --H-HHHHHHhccCCEEEEECC
Confidence 1 345677888888888874
No 490
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=90.19 E-value=0.77 Score=41.13 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=32.6
Q ss_pred cCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 142 FTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 142 l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
+.|+++.|.|. |.||+.+++.|...|++|++.+|+.+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAE 41 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 67899999986 67999999999999999999988653
No 491
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.18 E-value=0.47 Score=41.87 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=33.9
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
++.|+++.|+|. |.||+.+++.+...|++|++.+++..
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~ 40 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQE 40 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 367899999997 99999999999999999999988753
No 492
>PRK12828 short chain dehydrogenase; Provisional
Probab=90.11 E-value=0.51 Score=41.20 Aligned_cols=38 Identities=29% Similarity=0.363 Sum_probs=33.5
Q ss_pred ccCCCEEEEEcC-ChHHHHHHHHHHhCCCCEEEecCCCC
Q 021388 141 KFTGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEK 178 (313)
Q Consensus 141 ~l~g~~igiiG~-G~iG~~iA~~l~~~G~~V~~~~~~~~ 178 (313)
.+.|+++.|.|. |.||+.+++.+...|++|++.+|+..
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~ 42 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAA 42 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChH
Confidence 377899999975 99999999999999999999998654
No 493
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.11 E-value=0.43 Score=43.84 Aligned_cols=37 Identities=16% Similarity=0.301 Sum_probs=32.2
Q ss_pred cccCCCEEEEEcCChHHHHHHHHHHhCCC-CEEEecCC
Q 021388 140 TKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYYSRT 176 (313)
Q Consensus 140 ~~l~g~~igiiG~G~iG~~iA~~l~~~G~-~V~~~~~~ 176 (313)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|..
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 35899999999999999999999999995 67777743
No 494
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=90.09 E-value=0.48 Score=48.06 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=33.0
Q ss_pred ccCCCEEEEEcCChHHHHHHHHHHhCCCCEEEecCC
Q 021388 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176 (313)
Q Consensus 141 ~l~g~~igiiG~G~iG~~iA~~l~~~G~~V~~~~~~ 176 (313)
.-.|++|.|||.|.+|...|..|+..|++|+++++.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 357999999999999999999999999999999864
No 495
>PLN02206 UDP-glucuronate decarboxylase
Probab=90.08 E-value=0.88 Score=44.80 Aligned_cols=41 Identities=22% Similarity=0.173 Sum_probs=35.2
Q ss_pred cccccccCCCEEEEEc-CChHHHHHHHHHHhCCCCEEEecCC
Q 021388 136 YKLTTKFTGKTVGIIG-LGRIGMAVAKRAEAFSCPINYYSRT 176 (313)
Q Consensus 136 ~~~~~~l~g~~igiiG-~G~iG~~iA~~l~~~G~~V~~~~~~ 176 (313)
.++|..-.+++|.|.| .|-||+.+++.|...|.+|.++|+.
T Consensus 111 ~~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~ 152 (442)
T PLN02206 111 IPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNF 152 (442)
T ss_pred CccccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCC
Confidence 3456667889999998 5999999999999999999998754
No 496
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.05 E-value=0.68 Score=41.98 Aligned_cols=35 Identities=14% Similarity=0.340 Sum_probs=31.5
Q ss_pred cCCCEEEEEcCC---hHHHHHHHHHHhCCCCEEEecCC
Q 021388 142 FTGKTVGIIGLG---RIGMAVAKRAEAFSCPINYYSRT 176 (313)
Q Consensus 142 l~g~~igiiG~G---~iG~~iA~~l~~~G~~V~~~~~~ 176 (313)
+.||++.|.|.| .||+++|+.|...|++|+..+++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~ 41 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN 41 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc
Confidence 678999999987 59999999999999999887765
No 497
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=90.05 E-value=1.4 Score=46.82 Aligned_cols=105 Identities=15% Similarity=0.252 Sum_probs=66.9
Q ss_pred CEEEEEcCChHHHHH-HHHHHhCCCCEEEecCCCCCc------cccccC-CCHHHHhhcCCEEEEecCCChhhh------
Q 021388 145 KTVGIIGLGRIGMAV-AKRAEAFSCPINYYSRTEKPN------LKYKYY-PSVVELASNCHILVVACPLTEETR------ 210 (313)
Q Consensus 145 ~~igiiG~G~iG~~i-A~~l~~~G~~V~~~~~~~~~~------~~~~~~-~~l~e~~~~aDvV~~~lp~~~~t~------ 210 (313)
+++.|+|+|..|.+. |+.|+..|++|.++|...... .+.... ....+.+..+|+|+..-.-.+.+.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~ 84 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK 84 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence 369999999999997 999999999999999754321 122111 112355678998876532222211
Q ss_pred ----cccCH-HHHhcc-CC-CcEEEEcCCCccccHHHHHHHHHhCC
Q 021388 211 ----HIINR-EVIDAL-GP-KGVLINIGRGPHVDERELVSALVEGR 249 (313)
Q Consensus 211 ----~li~~-~~l~~m-k~-ga~lIn~~rg~~vd~~al~~al~~~~ 249 (313)
.++.+ +++..+ +. ..+-|--+.|......-+...|++..
T Consensus 85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g 130 (809)
T PRK14573 85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK 130 (809)
T ss_pred HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence 12333 233333 32 24556666799888888888888754
No 498
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.03 E-value=2.2 Score=40.36 Aligned_cols=110 Identities=18% Similarity=0.157 Sum_probs=69.1
Q ss_pred CEEEEEcCChHHHHHHHHHHhC---CCCEE-EecCCCCCcc---------ccccCCCHHHHhhcC--CEEEEecCCChhh
Q 021388 145 KTVGIIGLGRIGMAVAKRAEAF---SCPIN-YYSRTEKPNL---------KYKYYPSVVELASNC--HILVVACPLTEET 209 (313)
Q Consensus 145 ~~igiiG~G~iG~~iA~~l~~~---G~~V~-~~~~~~~~~~---------~~~~~~~l~e~~~~a--DvV~~~lp~~~~t 209 (313)
-+.||+|+|.|++..++.+... +++|. ++||+.+... ....+.+.+|++++. |+|.+..|...+-
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~ 86 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHY 86 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHH
Confidence 3689999999999999999743 57765 5677554221 123467899999876 9999998865442
Q ss_pred hcccCHHHHhccCCCcEEEEcCC-CccccHHHHHHHHHhCCeeEEEecCCCC
Q 021388 210 RHIINREVIDALGPKGVLINIGR-GPHVDERELVSALVEGRLGGAGLDVFEN 260 (313)
Q Consensus 210 ~~li~~~~l~~mk~ga~lIn~~r-g~~vd~~al~~al~~~~l~ga~lDV~~~ 260 (313)
+ +. .+...+...+|+.--- -++-+.+.+++|.+.+.+. ..|-++.
T Consensus 87 e-vv---~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~--~meg~~~ 132 (351)
T KOG2741|consen 87 E-VV---MLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVF--FMEGLWW 132 (351)
T ss_pred H-HH---HHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcE--EEeeeee
Confidence 2 21 2222233345554432 2334556677777777765 5554433
No 499
>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]
Probab=90.00 E-value=0.56 Score=42.77 Aligned_cols=95 Identities=18% Similarity=0.261 Sum_probs=64.0
Q ss_pred cccccCCCEEEEEcCCh-HHHHHHHHHHhCCCCEEEecC-CCCCccccccCCCHHHHhhcCCEEEEecCCChhhhcccCH
Q 021388 138 LTTKFTGKTVGIIGLGR-IGMAVAKRAEAFSCPINYYSR-TEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINR 215 (313)
Q Consensus 138 ~~~~l~g~~igiiG~G~-iG~~iA~~l~~~G~~V~~~~~-~~~~~~~~~~~~~l~e~~~~aDvV~~~lp~~~~t~~li~~ 215 (313)
.+..+.||++.|+|-.. +|.++|..|..-|.+++=.+. +-...-.......++.-.+++|+++.++- -.++|..
T Consensus 160 ~gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVti~hr~t~~~~lk~ht~~adivi~a~g----~p~li~~ 235 (309)
T KOG0089|consen 160 TGIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVTIFHRYTSKPQLKHHTRDADIVISAVG----IPNLITS 235 (309)
T ss_pred hCCeecCceEEEEcccccccchHHHHHhhcCCcccccCcceEEEEEcCCCchhHHHHHHhcceeehhcC----CCccccc
Confidence 35679999999999875 699999999998765542221 10000001112245667889999998875 3345544
Q ss_pred HHHhccCCCcEEEEcCCCccccHH
Q 021388 216 EVIDALGPKGVLINIGRGPHVDER 239 (313)
Q Consensus 216 ~~l~~mk~ga~lIn~~rg~~vd~~ 239 (313)
+ ..|+|+.++|++--.+-|..
T Consensus 236 d---~Ik~Ga~vidvgin~v~dp~ 256 (309)
T KOG0089|consen 236 D---MIKPGAAVIDVGINRVHDPS 256 (309)
T ss_pred c---eeecCceeEecCCCcccccc
Confidence 3 35899999999988776654
No 500
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=89.95 E-value=1.4 Score=41.88 Aligned_cols=83 Identities=11% Similarity=0.214 Sum_probs=50.5
Q ss_pred CCCEEEEEc-CChHHHHHHHHHHhCCC---CEEEe--cCCCCCccccc----cCCCH-HHHhhcCCEEEEecCCChhhhc
Q 021388 143 TGKTVGIIG-LGRIGMAVAKRAEAFSC---PINYY--SRTEKPNLKYK----YYPSV-VELASNCHILVVACPLTEETRH 211 (313)
Q Consensus 143 ~g~~igiiG-~G~iG~~iA~~l~~~G~---~V~~~--~~~~~~~~~~~----~~~~l-~e~~~~aDvV~~~lp~~~~t~~ 211 (313)
...+|+|+| .|.+|+.+.+.|...++ ++.++ .++..+..... ...++ .+.+.++|+|++++|... +
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~-s-- 82 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSI-S-- 82 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHH-H--
Confidence 346899997 58899999999988665 33333 23322221110 11111 234578999999998542 2
Q ss_pred ccCHHHHhc-cCCCcEEEEcC
Q 021388 212 IINREVIDA-LGPKGVLINIG 231 (313)
Q Consensus 212 li~~~~l~~-mk~ga~lIn~~ 231 (313)
.++... .+.|+.+||.|
T Consensus 83 ---~~~~~~~~~~g~~VIDlS 100 (344)
T PLN02383 83 ---KKFGPIAVDKGAVVVDNS 100 (344)
T ss_pred ---HHHHHHHHhCCCEEEECC
Confidence 233332 25689999998
Done!