RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021388
(313 letters)
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 480 bits (1239), Expect = e-173
Identities = 255/313 (81%), Positives = 281/313 (89%)
Query: 1 MESIGVLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAE 60
ME+IGVLM CPM+TYLEQEL++RF LF++WT + FL Q +IRAVVGN+ AGADAE
Sbjct: 21 MEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAE 80
Query: 61 LIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLC 120
LIDALPKLEIVSSFSVGLDKVD++KC+EKGVRVTNTPDVLTDDVADLAIGL+LAVLRR+C
Sbjct: 81 LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 140
Query: 121 ESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN 180
E D+YVR G WK GD+KLTTKF+GK VGIIGLGRIG+AVA+RAEAF CPI+Y+SR++KPN
Sbjct: 141 ECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 200
Query: 181 LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERE 240
Y YY SVVELASN ILVVACPLT ET HIINREVIDALGPKGVLINIGRGPHVDE E
Sbjct: 201 TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPE 260
Query: 241 LVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
LVSALVEGRLGGAGLDVFE EP VPE+LFGLENVVL+PHVGSGTVETRK MADLV+GNLE
Sbjct: 261 LVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLE 320
Query: 301 AHFLNKPLLTPVV 313
AHF KPLLTPVV
Sbjct: 321 AHFSGKPLLTPVV 333
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 460 bits (1186), Expect = e-164
Identities = 127/308 (41%), Positives = 183/308 (59%), Gaps = 2/308 (0%)
Query: 6 VLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL 65
+L+ PM ++ EL+R +++ + + +D+ A + IRAV AG E ++ L
Sbjct: 33 LLLVEPMMPFVMDELQRNYSVHRLYQAADRPALEAALPS-IRAVATGGGAGLSNEWMEKL 91
Query: 66 PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRY 125
P L I++ VG DKVD+ + + + + VT TP VL DDVADL I LMLAVLRR+ + DR
Sbjct: 92 PSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRL 151
Query: 126 VRSGKWKK-GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK 184
VR G+W L GK +G++GLG+IG A+A RAEAF + Y++R+ + +
Sbjct: 152 VREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGVDWI 211
Query: 185 YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSA 244
+ S V+LA + +L V + T++I++ ++ ALGP+G+++N+ RG VDE L+ A
Sbjct: 212 AHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEA 271
Query: 245 LVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFL 304
L G + GAGLDVF NEP + E N VLMPH GS TVETR M LVL NL AHF
Sbjct: 272 LKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFA 331
Query: 305 NKPLLTPV 312
+ V
Sbjct: 332 GEKAPNTV 339
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 383 bits (987), Expect = e-134
Identities = 102/314 (32%), Positives = 159/314 (50%), Gaps = 7/314 (2%)
Query: 6 VLMACPMNTYLEQELERRFNLFKF-WTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDA 64
+ +E EL +RF+L + ++ + + AT AE+I
Sbjct: 31 AFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRK 90
Query: 65 L-PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESD 123
L P L+ +++ SVG D +DM + G++V +TPDVL+D A++A+ L+L RR E+D
Sbjct: 91 LQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEAD 150
Query: 124 RYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL 181
R VRSG W L TG+ +GI G+GRIG A+A RA F I+Y++RT +
Sbjct: 151 RMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHA 210
Query: 182 K---YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDE 238
Y+ ++ L I ++A P E + ++ + I + V+INI RG +++
Sbjct: 211 LEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLIND 270
Query: 239 RELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGN 298
L+ AL L AGLDVF NEP + L+N+ L PH+GS T ETR M L++
Sbjct: 271 DALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQG 330
Query: 299 LEAHFLNKPLLTPV 312
+EA + +
Sbjct: 331 IEALNQSDVPDNLI 344
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 356 bits (917), Expect = e-123
Identities = 90/321 (28%), Positives = 147/321 (45%), Gaps = 25/321 (7%)
Query: 16 LEQELERRFNLFKFWTVSDKTQFLKAQQNN--------IRAVVGNATAGA--DAELIDAL 65
L + +++F + ++ F +A + I+ V N T +A+LI L
Sbjct: 19 LWSDFQQKFEV-IPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHL 77
Query: 66 PK-LEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDR 124
P L++ ++ G D +D+ E+GV N+ +DLA+ L+L+V R S+R
Sbjct: 78 PSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSER 137
Query: 125 YVRSGKWKKG------DYKLTTKFTGKTVGIIGLGRIGMAVAKRA-EAFSCPINYYSRTE 177
R+G + K G +G +GLG I +A++A + YY
Sbjct: 138 AARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAP 197
Query: 178 KP-----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGR 232
L + S+ ELA + V+ P + T H+I+ A+ P ++N R
Sbjct: 198 ADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTAR 257
Query: 233 GPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMA 292
GP + + L++AL G+L AGLDV E EP V +EL +++V L H+G +ET
Sbjct: 258 GPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGGVAIETFHEFE 317
Query: 293 DLVLGNLEAHFLN-KPLLTPV 312
L + N++ L KPLLTP
Sbjct: 318 RLTMTNIDRFLLQGKPLLTPA 338
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 340 bits (874), Expect = e-117
Identities = 133/319 (41%), Positives = 185/319 (57%), Gaps = 14/319 (4%)
Query: 6 VLMACPMNTYLEQELERRFNLFKFW---TVSDKTQFLKAQQNNIRAVVGNATAGADAELI 62
V + + + LE F + + W + LK + + A+V + D E+
Sbjct: 5 VFITREIPEVGIKMLEDEFEV-EVWGDEKEIPREILLKKVKE-VDALVTMLSERIDKEVF 62
Query: 63 DALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCES 122
+ PKL IV++++VG D +D+ + ++G+ VTNTPDVLTD ADLA L+LA R + +
Sbjct: 63 ENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKG 122
Query: 123 DRYVRSGKWKKGDYKLTTKF------TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
DR+VRSG+WKK K+ GKT+GIIGLGRIG A+AKRA+ F+ I YYSRT
Sbjct: 123 DRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRT 182
Query: 177 EKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG 233
K ++ + + + +L +V+A PLT ET H+IN E + + +LINI RG
Sbjct: 183 RKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARG 242
Query: 234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMAD 293
VD LV AL EG + GAGLDVFE EP+ EELF L+NVVL PH+GS + R+ MA+
Sbjct: 243 KVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAREGMAE 302
Query: 294 LVLGNLEAHFLNKPLLTPV 312
LV NL A + T V
Sbjct: 303 LVAKNLIAFKRGEIPPTLV 321
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 335 bits (861), Expect = e-115
Identities = 87/318 (27%), Positives = 154/318 (48%), Gaps = 13/318 (4%)
Query: 6 VLMACPMNTYLEQELERRFNLFKFW---TVSDKTQFLKAQQNNIRAVVGNATAGADAELI 62
+L+ P+ +++ + ++ ++ + A++ E+I
Sbjct: 4 ILITWPLPEAAMARARESYDV-IAHGDDPKITIDEMIETAKS-VDALLITLNEKCRKEVI 61
Query: 63 DALPK-LEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCE 121
D +P+ ++ +S++S+G D +D+ CK +G++V N P +T A++A+ L+L RR E
Sbjct: 62 DRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGE 121
Query: 122 SDRYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP 179
++ +R+ W + K KT+GI G G IG A+AKRA+ F I+Y+
Sbjct: 122 GEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRAS 181
Query: 180 N-----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGP 234
+ + ++ S+ L S + P T ETR+ N+ I +L +++N RG
Sbjct: 182 SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGD 241
Query: 235 HVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMADL 294
VD +V+AL GRL AG DVF EP++ E + L N L PH+GS + R+ MA
Sbjct: 242 LVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAHQ 301
Query: 295 VLGNLEAHFLNKPLLTPV 312
++A F + +
Sbjct: 302 ANDLIDALFGGADMSYAL 319
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 332 bits (855), Expect = e-115
Identities = 118/313 (37%), Positives = 170/313 (54%), Gaps = 9/313 (2%)
Query: 6 VLMACPMNTYLEQELERRFNLFKFW--TVSDKTQFLKAQQNNIRAVVGNATAGADAELID 63
VL+ + L R + K + LK + ++ DAE++D
Sbjct: 3 VLVTRTLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEG-AVGLIPTVEDRIDAEVMD 61
Query: 64 ALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESD 123
L++++ +SVG+D VD+ +E+G+RVT+TP VLT+ ADL + L+LAV RR+ E
Sbjct: 62 RAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGA 121
Query: 124 RYVRSGKWKK--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNL 181
Y R G WK + L G T+G++G+GRIG AVAKRA AF + Y++RT KP L
Sbjct: 122 AYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKP-L 180
Query: 182 KYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDEREL 241
Y + S+ EL ++ + PLT ET ++NRE + A+ +L+N RG VD L
Sbjct: 181 PYP-FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEAL 239
Query: 242 VSALVEGRLGGAGLDVFENEPHVP-EELFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
V AL G L GAGLDV + EP P L+ L N V+ PH+GS TR+ MA++ + NL
Sbjct: 240 VEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLL 298
Query: 301 AHFLNKPLLTPVV 313
A + PVV
Sbjct: 299 AVLEGREPPNPVV 311
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 328 bits (843), Expect = e-112
Identities = 100/307 (32%), Positives = 155/307 (50%), Gaps = 9/307 (2%)
Query: 14 TYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL-PKLEIVS 72
L + + + + + ++ + D ++DA L+++S
Sbjct: 23 VALARAADCEVEQWDSDEPIPAKELERGVAG-AHGLLCLLSDHVDKRILDAAGANLKVIS 81
Query: 73 SFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWK 132
+ SVG+D + + + K++G+RV TPDVLTD A+LA+ L+L RRL E+ V++G W
Sbjct: 82 TMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWT 141
Query: 133 K--GDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY-SRTEKPNLKYKY---Y 186
+ T TVGIIGLGRIG A+A+R + F Y R +P ++ +
Sbjct: 142 SWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEF 201
Query: 187 PSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALV 246
S ELA+ +VVAC LT T + N++ + V INI RG V++ +L AL
Sbjct: 202 VSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALA 261
Query: 247 EGRLGGAGLDVFENEP-HVPEELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLN 305
G++ AGLDV EP L L+N V++PH+GS T TR TM+ L NL A
Sbjct: 262 SGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRG 321
Query: 306 KPLLTPV 312
+P+ + +
Sbjct: 322 EPMPSEL 328
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 323 bits (829), Expect = e-111
Identities = 64/282 (22%), Positives = 111/282 (39%), Gaps = 8/282 (2%)
Query: 35 KTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVT 94
+ F + ++ V + AE + +P+L+ + + GLD + V V
Sbjct: 18 RKYFKIVRGGDLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVTVA 76
Query: 95 NTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGR 154
D VA+ A+ L+LA +R+ + ++ G + + G+ V ++GLG
Sbjct: 77 GNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRD--VEIPLIQGEKVAVLGLGE 134
Query: 155 IGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIIN 214
IG V K A + +SRT K +++ S+ E V A PL + TR ++
Sbjct: 135 IGTRVGKILAALGAQVRGFSRTPKE-GPWRFTNSLEEALREARAAVCALPLNKHTRGLVK 193
Query: 215 REVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE--ELFGLE 272
+ + + V +N+GR +D ++ L E DV+ + E F L
Sbjct: 194 YQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLP 253
Query: 273 NVVLMPHVGSGTVETR--KTMADLVLGNLEAHFLNKPLLTPV 312
NVV P V G R + M + NL +
Sbjct: 254 NVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNIA 295
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 311 bits (800), Expect = e-106
Identities = 80/278 (28%), Positives = 134/278 (48%), Gaps = 13/278 (4%)
Query: 48 AVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADL 107
A++ DA+ + A P+L ++ G D D+ C +GV +T PD+LT A+L
Sbjct: 48 AMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAEL 107
Query: 108 AIGLMLAVLRRLCESDRYVRSGKWKKGDYKLT-TKFTGKTVGIIGLGRIGMAVAKRAEAF 166
AIGL + + R L +D +VRSGK++ + T TVG +G+G IG+A+A R + +
Sbjct: 108 AIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGW 167
Query: 167 SCPINYYSRTE-KPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALG 222
+ Y+ + + + EL ++ +++A PL +T H++N E++ +
Sbjct: 168 GATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVR 227
Query: 223 PKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENE--------PHVPEELFGLENV 274
P +L+N RG VDE +++AL G+LGG DVFE E + L N
Sbjct: 228 PGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNT 287
Query: 275 VLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
+ PH+GS R + N+ + + V
Sbjct: 288 LFTPHIGSAVRAVRLEIERCAAQNILQALAGERPINAV 325
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 288 bits (739), Expect = 6e-97
Identities = 86/265 (32%), Positives = 144/265 (54%), Gaps = 12/265 (4%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
E+++ +L+++S S G D +D+ + ++G+ VT +L++ VA+ +GL++ ++R
Sbjct: 55 TREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMR 114
Query: 118 RLCESDRYVRSGKWKKGDYKLTTKF-----TGKTVGIIGLGRIGMAVAKRAEAFSCPINY 172
++ +D+++R G+W+ T GK VGI+G+G IG A+A+R F + Y
Sbjct: 115 KIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYY 174
Query: 173 YSRTEKPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGV-LI 228
+SR K N++ + Y + EL I+++A PLT +T HIIN E + L +G L+
Sbjct: 175 WSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKL--EGKYLV 232
Query: 229 NIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLE-NVVLMPHVGSGTVET 287
NIGRG VDE+ + A+ +G+L G DVFE EP ELF E VL PH +E
Sbjct: 233 NIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEA 292
Query: 288 RKTMADLVLGNLEAHFLNKPLLTPV 312
++ + + NL + V
Sbjct: 293 QEDVGFRAVENLLKVLRGEVPEDLV 317
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 280 bits (718), Expect = 7e-93
Identities = 63/263 (23%), Positives = 108/263 (41%), Gaps = 7/263 (2%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
E I L++ + +G D VD+ ++ V V + VA+ + ++L+++R
Sbjct: 104 TPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVR 163
Query: 118 RLCESDRYVRSGKWKKGDY-KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
S + R G W D VG + GRIG+AV +R F ++Y R
Sbjct: 164 NYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRH 223
Query: 177 EKP-----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
P L ++ + ++ C ++ + CPL ET H+IN E + ++N
Sbjct: 224 RLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 283
Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKT 290
RG D + AL GRL G DV+ +P + + + PH+ T+ +
Sbjct: 284 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQAR 343
Query: 291 MADLVLGNLEAHFLNKPLLTPVV 313
A LE F +P+ +
Sbjct: 344 YAAGTREILECFFEGRPIRDEYL 366
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 268 bits (687), Expect = 4e-89
Identities = 81/313 (25%), Positives = 139/313 (44%), Gaps = 11/313 (3%)
Query: 6 VLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL 65
VLMA ++L++ + WT D A + I + GN L
Sbjct: 4 VLMAQATK---PEQLQQLQTTYPDWTFKDAAAVTAADYDQIEVMYGNHPL-LKTILARPT 59
Query: 66 PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRY 125
+L+ V S G+D + + + GV V NT + D +++ + ML+V+R +
Sbjct: 60 NQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLN 119
Query: 126 VRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKY 185
R + +T TG+ + I G G+IG ++A +A A + + T P +
Sbjct: 120 QRGARQWALPMTTST-LTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE 178
Query: 186 ---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELV 242
+ + + + + +V A PLT T H+ + E+ + +LINIGRGP VD L+
Sbjct: 179 TVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALM 238
Query: 243 SALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVGSGTVETRKTMADLVLGNLE 300
+AL +L A LDV E EP +P + L+ ++V++ PH+ R T+ + N
Sbjct: 239 TALDHHQLSMAALDVTEPEP-LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFA 297
Query: 301 AHFLNKPLLTPVV 313
+ L+ V
Sbjct: 298 QFVKDGTLVRNQV 310
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 259 bits (663), Expect = 5e-86
Identities = 61/251 (24%), Positives = 111/251 (44%), Gaps = 7/251 (2%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
+ + +++ + S G+D +D+ E V +N + VA+ A L+LA +
Sbjct: 40 IKDRYVLGKRTKMIQAISAGVDHIDVNGIPENVVLCSNAG-AYSISVAEHAFALLLAHAK 98
Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
+ E++ +++G +++ TT GK +GI+G G IG VA A+AF + Y+R+
Sbjct: 99 NILENNELMKAGIFRQ---SPTTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSS 155
Query: 178 KPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVD 237
S +L +++A PLT++TR ++N ++ ++N+ R V
Sbjct: 156 VDQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVS 215
Query: 238 ERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVE-TRKTMADLVL 296
+ +++ L E DV+ NEP L N +L PHV G L
Sbjct: 216 KPDMIGFLKERSDVWYLSDVWWNEP--EITETNLRNAILSPHVAGGMSGEIMDIAIQLAF 273
Query: 297 GNLEAHFLNKP 307
N+ F +
Sbjct: 274 ENVRNFFEGEG 284
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 259 bits (665), Expect = 2e-85
Identities = 72/296 (24%), Positives = 121/296 (40%), Gaps = 12/296 (4%)
Query: 29 FWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKE 88
F + + N + T E ++ L I+ G D +D+ +
Sbjct: 47 FCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGD 106
Query: 89 KGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKF------ 142
G+ V N P ++ AD + +L + RR + +R G + ++
Sbjct: 107 LGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARI 166
Query: 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP----NLKYKYYPSVVELASNCHI 198
G+T+GIIGLGR+G AVA RA+AF + +Y L + ++ +L +
Sbjct: 167 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDC 226
Query: 199 LVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVF 258
+ + C L E H+IN + + L+N RG VDE+ L AL EGR+ GA LDV
Sbjct: 227 VTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVH 286
Query: 259 ENEPHVPEE--LFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
E+EP + L N++ PH + + M + + + +
Sbjct: 287 ESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLK 342
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 249 bits (637), Expect = 2e-81
Identities = 77/283 (27%), Positives = 130/283 (45%), Gaps = 18/283 (6%)
Query: 48 AVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADL 107
+ EL+ +P+L+++ + SVG D +D+ CK+KG+ VT+ P + VA+
Sbjct: 45 LISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEH 104
Query: 108 AIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFS 167
++L +++RL + V+ + + L + T+G+IG GRIG VA AF
Sbjct: 105 TFAMILTLVKRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAMYGLAFG 164
Query: 168 CPINYYSRTEKPNLK--YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKG 225
+ Y ++ +LK Y S+ EL ++ + P T+ET H+IN E I +
Sbjct: 165 MKVLCYDVVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGV 224
Query: 226 VLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHV----------------PEELF 269
LIN RG VD L A G+ G GLDVFE+E + EL
Sbjct: 225 YLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELA 284
Query: 270 GLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
+NV++ PH+ T ++ + + + + ++A
Sbjct: 285 CKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKG 327
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 248 bits (636), Expect = 5e-81
Identities = 64/263 (24%), Positives = 116/263 (44%), Gaps = 7/263 (2%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
AE I L+++ + +G D +D+ G+ V VA+ + +L ++R
Sbjct: 77 TAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMR 136
Query: 118 RLCESDRYVRSGKWKKGDYKLT-TKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
V G+W GKT+G +G GRIG + +R + F C + Y+ R
Sbjct: 137 NFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRL 196
Query: 177 EKP-----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
+ K+ + E+ C ++V+ PLTE+TR + N+E+I L +++N
Sbjct: 197 QMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNA 256
Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKT 290
RG ++ + +V A+ G +GG DV++ +P + + N + PH T++ +
Sbjct: 257 RGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLR 316
Query: 291 MADLVLGNLEAHFLNKPLLTPVV 313
A LE +F + T
Sbjct: 317 YAAGTKDMLERYFKGEDFPTENY 339
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 240 bits (615), Expect = 2e-78
Identities = 94/242 (38%), Positives = 133/242 (54%), Gaps = 5/242 (2%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
+I++ PKL++++ VGLD +D+ KEKG+ V N P + VA+LA+GLM +V R
Sbjct: 57 TRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVAR 116
Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
++ +DR +R G W K + + + GKT+GIIG GRIG VAK A A I Y
Sbjct: 117 KIAFADRKMREGVWAKKEA-MGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYP 175
Query: 178 KPNLKYKY---YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGP 234
+ + + L ++ + PL E T H+IN E + + +LIN RGP
Sbjct: 176 NEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGP 235
Query: 235 HVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVLMPHVGSGTVETRKTMAD 293
VD LV AL EG + GAGLDVFE EP + L +NVVL PH+G+ TVE ++
Sbjct: 236 VVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGV 295
Query: 294 LV 295
V
Sbjct: 296 EV 297
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 229 bits (586), Expect = 9e-74
Identities = 70/283 (24%), Positives = 113/283 (39%), Gaps = 19/283 (6%)
Query: 48 AVVGNATAGADAELIDALPK--LEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVA 105
VV AE + AL + +S +VG+D +DM K KE G ++TN P + +A
Sbjct: 49 GVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIA 108
Query: 106 DLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEA 165
+ A +LR+ D V + + + + VG++G G IG + E
Sbjct: 109 EHAAIQAARILRQDKAMDEKVARHDLRWAPT-IGREVRDQVVGVVGTGHIGQVFMQIMEG 167
Query: 166 FSCPINYYSRTEKPNLKY--KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGP 223
F + Y P L+ Y S+ +L ++ + P H+IN E I +
Sbjct: 168 FGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQ 227
Query: 224 KGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVP--------------EELF 269
V++N+ RGP VD ++ L G++ G +DV+E E + +L
Sbjct: 228 DVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLI 287
Query: 270 GLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
NV++ P T + M N K TPV
Sbjct: 288 ARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPV 330
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 229 bits (586), Expect = 1e-73
Identities = 77/279 (27%), Positives = 117/279 (41%), Gaps = 26/279 (9%)
Query: 58 DAELIDALPKLEIVSSFSV----GLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLML 113
+L+D LPKL+I+S +D+ C +KGV V A+L L++
Sbjct: 62 TRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVM 120
Query: 114 AVLRRLCESDRYVRSGKWKKGDYKLTTKFT---------GKTVGIIGLGRIGMAVAKRAE 164
A RR+ + ++ G W++ K TT G+T+GI G G+IG VA
Sbjct: 121 AAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGR 180
Query: 165 AFSCPINYYSRTEKPN----LKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDA 220
AF + + R + S L +L V L +ETR II +
Sbjct: 181 AFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTR 240
Query: 221 LGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE-LFGLENVVLMPH 279
+ P + +N R V+E +V+AL GR G A +DVFE EP + L +EN + PH
Sbjct: 241 MKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPH 300
Query: 280 VGSGTVETRKTMADLVLGNLEA-------HFLNKPLLTP 311
+G E+ + + N+ N L P
Sbjct: 301 IGYVERESYEMYFGIAFQNILDILQGNVDSVANPTALAP 339
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 226 bits (579), Expect = 2e-72
Identities = 67/270 (24%), Positives = 111/270 (41%), Gaps = 15/270 (5%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKG--VRVTNTPDVLTDDVADLAIGLMLAV 115
E ID KL++V VG D +D+ + G + V VA+ + ML +
Sbjct: 75 TKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVL 134
Query: 116 LRRLCESDRYVRSGKWKKGDY-KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSC-PINYY 173
+R + + + W+ K GKT+ IG GRIG V +R F+ + YY
Sbjct: 135 VRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYY 194
Query: 174 SRTEKP-----NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI 228
P + + ++ EL + I+ V PL T+ +IN+E++ L+
Sbjct: 195 DYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLV 254
Query: 229 NIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENV-----VLMPHVGS 282
N RG ++ +AL G+L G G DV+ +P + + N + PH
Sbjct: 255 NTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSG 314
Query: 283 GTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
T++ + A + LE+ F K P
Sbjct: 315 TTLDAQTRYAQGTVNILESFFTGKFDYRPQ 344
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 229 bits (585), Expect = 2e-71
Identities = 88/261 (33%), Positives = 133/261 (50%), Gaps = 10/261 (3%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
DAE++ A PKL+IV+ VGLD VD+ +GV V N P A+ A+ L+LA R
Sbjct: 57 DAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASR 116
Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY---- 173
++ +D +R WK+ + T+ GKTVG++GLGRIG VA+R AF + Y
Sbjct: 117 QIPAADASLREHTWKRSSF-SGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV 175
Query: 174 --SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
+R + ++ S+ +L + + V P T ET +I++E + P +++N
Sbjct: 176 SPARAAQLGIELL---SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAA 232
Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTM 291
RG VDE L A+ G + AGLDVF EP LF L VV+ PH+G+ T E +
Sbjct: 233 RGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRA 292
Query: 292 ADLVLGNLEAHFLNKPLLTPV 312
V ++ + + V
Sbjct: 293 GTDVAESVRLALAGEFVPDAV 313
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 223 bits (571), Expect = 2e-71
Identities = 76/257 (29%), Positives = 123/257 (47%), Gaps = 10/257 (3%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
A++I+A KL++V G+D VD+ KG+ V NTP+ + A+L G+++ + R
Sbjct: 80 TADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLAR 139
Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY---- 173
++ ++ ++ GKW++ + T+ GKT+GI+GLGRIG VA R ++F Y
Sbjct: 140 QIPQATASMKDGKWERKKFM-GTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPII 198
Query: 174 --SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
+ ++ + E+ C + V PL T ++N ++N
Sbjct: 199 SPEVSASFGVQQL---PLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCA 255
Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTM 291
RG VDE L+ AL G+ GA LDVF EP L ENV+ PH+G+ T E +
Sbjct: 256 RGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRC 315
Query: 292 ADLVLGNLEAHFLNKPL 308
+ + K L
Sbjct: 316 GEEIAVQFVDMVKGKSL 332
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 222 bits (568), Expect = 2e-71
Identities = 71/261 (27%), Positives = 128/261 (49%), Gaps = 15/261 (5%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
++I+ KL+I++ +GLD +D + +++ ++V P TD +L IGLM+A R
Sbjct: 59 TKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAAR 118
Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYY---- 173
++ S +SG +KK + GKT+GI+G GRIG V A A + Y
Sbjct: 119 KMYTSMALAKSGIFKK---IEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILD 175
Query: 174 --SRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
+ EK N K S+ EL N ++ + ++++ + II+ + + +++N
Sbjct: 176 IREKAEKINAKAV---SLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTS 232
Query: 232 RGPHVDERELVSALVEGRLGGAGLDVFENEP---HVPEELFGLENVVLMPHVGSGTVETR 288
R V+ + L+ + +G++ DVF NEP EL E V++ H+G+ T E +
Sbjct: 233 RAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQ 292
Query: 289 KTMADLVLGNLEAHFLNKPLL 309
K +A++ NL ++
Sbjct: 293 KRVAEMTTQNLLNAMKELGMI 313
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 219 bits (559), Expect = 8e-70
Identities = 64/283 (22%), Positives = 117/283 (41%), Gaps = 18/283 (6%)
Query: 48 AVVGNATAGADAELIDALPKLEI--VSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVA 105
AV+ A+ + +D KL + + + + G D +D KE G + P + +A
Sbjct: 48 AVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIA 107
Query: 106 DLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEA 165
+LA+ + +LR + +K + + + TVG++GLGRIG A+
Sbjct: 108 ELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHG 167
Query: 166 FSCPINYYSRTEKPNLK-YKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPK 224
+ E ++ Y S+ E+ I+ + P +E ++ R+ + +
Sbjct: 168 MGATVIGEDVFEIKGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDG 227
Query: 225 GVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE---------------LF 269
+L+N RG VD ++ A+ G+LGG G DV + E V + +
Sbjct: 228 AILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVD 287
Query: 270 GLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
V++ PH+GS T E K M ++ NL+ +
Sbjct: 288 LYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKI 330
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 216 bits (553), Expect = 7e-69
Identities = 67/282 (23%), Positives = 122/282 (43%), Gaps = 17/282 (6%)
Query: 48 AVVGNATAGADAELIDAL--PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVA 105
+ T A + + + ++ ++ +VG D +DM K+ G+R++N P +A
Sbjct: 47 GINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIA 106
Query: 106 DLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEA 165
+ A+ L +LR + + +++G ++K + + +TVG++G G IG K +
Sbjct: 107 EFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKG 166
Query: 166 FSCPINYYSRTEKPNLKYKY-YPSVVELASNCHILVVACPLTEETRHIINREVIDALGPK 224
F + Y + Y S+ +L ++ + P E+ HIIN + + P
Sbjct: 167 FGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPG 226
Query: 225 GVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEP--------------HVPEELFG 270
++IN R +D + ++S L G+L G G+D +E E + +EL G
Sbjct: 227 AIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLG 286
Query: 271 LENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
+ NVVL PH+ T M L +L T V
Sbjct: 287 MPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEV 328
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 206 bits (527), Expect = 4e-65
Identities = 68/321 (21%), Positives = 136/321 (42%), Gaps = 22/321 (6%)
Query: 1 MESIGVLMACPMNTYLEQELE-RRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADA 59
+ +L+ N + E+ L+ + +++ K ++
Sbjct: 3 LSQRTLLLLSQDNAHYERLLKAAHLPHLRILRADNQSDAEKLIGE-AHILMAEP--ARAK 59
Query: 60 ELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
L+ KL S G+D + + + ++TN + +++ G +L+++R+L
Sbjct: 60 PLLAKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQL 118
Query: 120 CESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP 179
+ W+ Y+ G+T+ I+G G IG +A + F + SR+ +
Sbjct: 119 PLYREQQKQRLWQSHPYQG---LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRE 175
Query: 180 NLKYKYYPSVV------ELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRG 233
+ V ++ + ++V P T ET H+ + P +L N+GRG
Sbjct: 176 ---RAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRG 232
Query: 234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LFGLENVVLMPHVGSGTVETRKTM 291
++E +L++AL G+LG A LDVFE EP +P + L+G N+++ PH + + +
Sbjct: 233 NAINEGDLLTALRTGKLGMAVLDVFEQEP-LPADSPLWGQPNLIITPHNSAYS--FPDDV 289
Query: 292 ADLVLGNLEAHFLNKPLLTPV 312
A + + N +PL +
Sbjct: 290 AQIFVRNYIRFIDGQPLDGKI 310
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 205 bits (524), Expect = 1e-63
Identities = 70/235 (29%), Positives = 114/235 (48%), Gaps = 7/235 (2%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
++I+A KL + +F++G ++VD+ ++G+ V N P T VA+L IG +L +LR
Sbjct: 60 TEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLR 119
Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
+ E++ G K + + GK +GIIG G IG + AE+ + +Y
Sbjct: 120 GVPEANAKAHRGVGNKLAAG-SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN 178
Query: 178 KPNLKY-KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV 236
K L + +L + ++ + P T++++ + I + P +LIN RG V
Sbjct: 179 KLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVV 238
Query: 237 DERELVSALVEGRLGGAGLDVFENEPHVPEE-----LFGLENVVLMPHVGSGTVE 286
D L AL L GA +DVF EP + L +NV+L PH+G T E
Sbjct: 239 DIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQE 293
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 205 bits (524), Expect = 2e-63
Identities = 78/235 (33%), Positives = 116/235 (49%), Gaps = 7/235 (2%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
E+ A +L V FSVG ++V++ +++G+ V N P T VA+L IG ++ ++R
Sbjct: 71 TEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMR 130
Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
R+ +G W+K + + GKT+GI+G G IG V AE+ + YY ++
Sbjct: 131 RIFPRSVSAHAGGWEKTAIG-SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSD 189
Query: 178 K-PNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHV 236
K K S+ EL ++ + P ++ T +I + + LIN RG V
Sbjct: 190 KLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDV 249
Query: 237 DERELVSALVEGRLGGAGLDVFENEPHVPEE-----LFGLENVVLMPHVGSGTVE 286
D L L EG L GA +DVF EP E L GLENV+L PH+G T E
Sbjct: 250 DLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEE 304
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 195 bits (498), Expect = 7e-61
Identities = 70/294 (23%), Positives = 121/294 (41%), Gaps = 26/294 (8%)
Query: 39 LKAQQNNIRAVVGNATAGADAE---------LIDALPKLEIVSSFSVGLDKV-----DMV 84
L+ + R A+ + A +L+ V G+D +
Sbjct: 22 LEKALPHARVREWKVGDNNPADYALVWQPPVEMLAGRRLKAVFVLGAGVDAILSKLNAHP 81
Query: 85 KCKEKGVRVTNTPDV-LTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFT 143
+ + + + D + + + A+ +L RR + WK
Sbjct: 82 EMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTRE--- 138
Query: 144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELA---SNCHILV 200
+VGI+G G +G VA+ +A+ P+ +SR+ K + Y EL + +L+
Sbjct: 139 EFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLI 198
Query: 201 VACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFEN 260
P T +T IIN E++D L ++N+ RG HV E +L++AL G+L GA LDVF
Sbjct: 199 NLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQ 258
Query: 261 EPHVPEE--LFGLENVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 312
EP +P+E L+ V + PH+ + T D + + +P+ V
Sbjct: 259 EP-LPQESPLWRHPRVAMTPHIAAVT--RPAEAIDYISRTITQLEKGEPVTGQV 309
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 179 bits (455), Expect = 1e-53
Identities = 52/233 (22%), Positives = 88/233 (37%), Gaps = 25/233 (10%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
+ L+ + V + + G D VD K+ G+ + P V + +L +
Sbjct: 53 NESLLSG-TPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAE 111
Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
R +T+GI+G+G +G + R EA
Sbjct: 112 RDG-------------------FSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPR 152
Query: 178 KPNLKYKYYPSVVELASNCHILVVACPLTEE----TRHIINREVIDALGPKGVLINIGRG 233
+ ++ EL +L PL ++ T H+ + +I L P +LIN RG
Sbjct: 153 AARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRG 212
Query: 234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVE 286
P VD L++ L G+ LDV+E EP + L ++ H+ T+E
Sbjct: 213 PVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIGT-SHIAGYTLE 264
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 174 bits (442), Expect = 7e-52
Identities = 46/254 (18%), Positives = 90/254 (35%), Gaps = 25/254 (9%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
+ + V + ++G D +D+ E G+ ++ P V D +G +LA+
Sbjct: 50 SRAALAG-SPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE 108
Query: 118 RLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTE 177
+T G++G G++G + + +
Sbjct: 109 VRG-------------------ADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPR 149
Query: 178 KPNLKYKYYPSVVELASNCHILVVACPLTEE----TRHIINREVIDALGPKGVLINIGRG 233
+ + S+ L + ++ + PL + TRH+++ + AL P L+N RG
Sbjct: 150 QAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRG 209
Query: 234 PHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLMPHVGSGTVETRKTMAD 293
VD + L L G LDV+E EP + ++ PH+ ++E +
Sbjct: 210 AVVDNQALRRLLEGGADLEVALDVWEGEPQ-ADPELAARCLIATPHIAGYSLEGKLRGTA 268
Query: 294 LVLGNLEAHFLNKP 307
+ A
Sbjct: 269 QIYQAYCAWRGIAE 282
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 68.8 bits (168), Expect = 2e-13
Identities = 27/218 (12%), Positives = 68/218 (31%), Gaps = 30/218 (13%)
Query: 45 NIRAVVGNATAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDV 104
+ + N + E+I+ P +V +S + K+ + + +
Sbjct: 74 KVDTIFSNESIVLTEEMIEKTPNHCVV--YSGISNTYLNQCMKKTNRTLVKLMERDDIAI 131
Query: 105 ADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAE 164
+ ++ + +D + G V ++GLGR+GM+VA++
Sbjct: 132 YNSIPTAEGTIMMAIQHTDFTIH----------------GANVAVLGLGRVGMSVARKFA 175
Query: 165 AFSCPINYYSRTEKP-------NLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217
A + +R ++ + + + + + P ++ V
Sbjct: 176 ALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIP-----ALVVTANV 230
Query: 218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGL 255
+ + +I++ P + L GL
Sbjct: 231 LAEMPSHTFVIDLASKPGGTDFRYAEKRGIKALLVPGL 268
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 2e-05
Identities = 58/346 (16%), Positives = 112/346 (32%), Gaps = 121/346 (34%)
Query: 13 NTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVS 72
+ Y E EL + + + ++ + AE + L + + +
Sbjct: 167 DDYFE-ELRDLYQTY---------------HVLVGDLIKFS-----AETLSELIRTTLDA 205
Query: 73 S--FSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGK 130
F+ GL+ ++ ++ TPD D + + I L + +L YV + K
Sbjct: 206 EKVFTQGLNILEWLENPSN------TPD--KDYLLSIPISCPLIGVIQLA---HYVVTAK 254
Query: 131 ---WKKGDYKLTTKFTGKTV---GIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK 184
+ G+ L + G T G++ + +A E+F + K +
Sbjct: 255 LLGFTPGE--LRSYLKGATGHSQGLVT--AVAIAETDSWESF------FVSVRKA-ITVL 303
Query: 185 YY---------------PSVVELASN------CHILVVA-CPLTEETRHI--INREVIDA 220
++ PS++E + +L ++ + ++ N +
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL--- 360
Query: 221 LGPKG-----VLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVV 275
P G L+N G + LV V G P P+ L+GL +
Sbjct: 361 --PAGKQVEISLVN---GA----KNLV---VSG-------------P--PQSLYGLNLTL 393
Query: 276 LMPHVGSGTVETRKTMAD--LVLGNLEAHFL------NKPLLTPVV 313
SG ++R ++ L N FL + LL P
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSN---RFLPVASPFHSHLLVPAS 436
Score = 34.3 bits (78), Expect = 0.061
Identities = 31/192 (16%), Positives = 61/192 (31%), Gaps = 61/192 (31%)
Query: 164 EAFSCPINYYSR------TEKPNLKYKYYPSVVELA-----------SNCHILVVACPLT 206
+ + P + + K + V+ L ++ H L
Sbjct: 52 DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 207 EETRHIINREVI----DALGPKGVLINIGRGPHVDERELVSALVEG------RL----GG 252
+T + +E+I A + + P +++ SAL +L GG
Sbjct: 112 NDTTLVKTKELIKNYITAR-------IMAKRP--FDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 253 AGLDVFENEPHVPE--ELFGLENVVLMPHVGSGTVETRKTMADLVLGNLEA--HF----- 303
G + + E +L+ + VG + +T+++L+ L+A F
Sbjct: 163 QG----NTDDYFEELRDLYQTYH----VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 304 ----LNKPLLTP 311
L P TP
Sbjct: 215 ILEWLENPSNTP 226
Score = 30.0 bits (67), Expect = 1.1
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 259 ENEPHVPEELFGLENVVLMPHVGS----GTVETRKTMADLVLGNLEAHFLN 305
++EP P EL G + +V S V + +L L E +L
Sbjct: 51 DDEPTTPAELVGK----FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE 97
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 2e-05
Identities = 42/303 (13%), Positives = 80/303 (26%), Gaps = 98/303 (32%)
Query: 1 MESIG--VLMACPMNTYLEQELERRFNLFK-FW----TVSDKTQFLKAQQNNIRAVVGNA 53
+ G + + L +++ + + FK FW + L+ Q + + N
Sbjct: 158 VLGSGKTWVAL---DVCLSYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 54 TAGADAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLML 113
T+ +D L I + L C VL +V +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL----------LVL-LNVQNAKA---- 258
Query: 114 AVLRRLCESDRYVRSGKWKKGDYK----LTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCP 169
W + LTT+F T + +++ + +
Sbjct: 259 -----------------WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-- 299
Query: 170 INYYSRTEKPNLKYKYYP-SVVEL---ASNCHILVVACPLTEETRHIINR---------- 215
E +L KY +L + ++ + E R +
Sbjct: 300 -----PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNCD 353
Query: 216 ---EVI----DALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEEL 268
+I + L P + R++ L VF H+P L
Sbjct: 354 KLTTIIESSLNVLEPA------------EYRKMFDRLS----------VFPPSAHIPTIL 391
Query: 269 FGL 271
L
Sbjct: 392 LSL 394
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 37.1 bits (85), Expect = 0.005
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 146 TVGIIGLGRIGMAVAKRAEAFSCPIN-YYSRTEKP------NLKYKYYPSVVELASNCHI 198
+ +IG G + +AK I YSRTE+ ++ +Y + E+ +
Sbjct: 12 PIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKL 71
Query: 199 LVVACP 204
+V+
Sbjct: 72 YIVSLK 77
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 34.4 bits (78), Expect = 0.033
Identities = 6/64 (9%), Positives = 18/64 (28%), Gaps = 5/64 (7%)
Query: 146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP-----NLKYKYYPSVVELASNCHILV 200
+ +G G + + + SR+ + ++ + ++
Sbjct: 4 VLNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVF 63
Query: 201 VACP 204
V P
Sbjct: 64 VIVP 67
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 33.1 bits (75), Expect = 0.075
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
V I G G G ++ + + + SR
Sbjct: 21 VVCIFGTGDFGKSLGLKMLQCGYSVVFGSRN 51
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 31.9 bits (73), Expect = 0.098
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 141 KFTGKTVGIIGLGRIGMAVAKR 162
+ K +IGLGR G ++ K
Sbjct: 3 RIKNKQFAVIGLGRFGGSIVKE 24
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 32.6 bits (74), Expect = 0.099
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 146 TVGIIGLGRIGMAVAKRAEAFSCPINYYSRT 176
VGI+G G ++A R + SR
Sbjct: 30 KVGILGSGDFARSLATRLVGSGFKVVVGSRN 60
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography,
heme, electron transport, oxidoreductase; HET: SRM;
2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1
d.134.1.1 d.134.1.1
Length = 608
Score = 33.1 bits (76), Expect = 0.10
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 44 NNIRAVVGNATAGADA-ELIDALPKLEIVSSFS 75
+N+R VGN AG D E++D P ++S F
Sbjct: 222 DNVRNPVGNPLAGIDPHEIVDTRPFTNLISQFV 254
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 32.9 bits (76), Expect = 0.11
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 145 KTVGIIGLGRIG--MAVAKRAEAFSCPINYYSRTEKPNLKY--------KYYPSVVELAS 194
KT+ I GLG IG +A+ + + I Y+R+++ + + A+
Sbjct: 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDR-SRDIALERGIVDEATADFKVFAA 65
Query: 195 NCHILVVACPLTEETRHIINREVIDALGPKGVLI 228
++++A P+ ++T I + + D + V+I
Sbjct: 66 LADVIILAVPI-KKTIDFI-KILADLDLKEDVII 97
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural
genomics, PSI-2, protein structure initiative; HET: MSE;
1.90A {Silicibacter pomeroyi dss-3}
Length = 391
Score = 32.9 bits (76), Expect = 0.12
Identities = 9/45 (20%), Positives = 16/45 (35%)
Query: 185 YYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLIN 229
YPS ++ ++ V P E R L G+++
Sbjct: 124 GYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGLDLAGLMVA 168
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein,
oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB:
3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A*
3b0j_A* 3b0l_A* 3b0h_A*
Length = 591
Score = 32.7 bits (75), Expect = 0.18
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 44 NNIRAVVGNATAGADA-ELIDALPKLEIVSSF 74
+N+R VGN AG D E++D P ++S F
Sbjct: 205 DNVRNPVGNPLAGIDPEEIVDTRPYTNLLSQF 236
>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite,
siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in
europe; HET: SRM; 2.80A {Mycobacterium tuberculosis}
SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB:
1zj9_A*
Length = 566
Score = 32.3 bits (74), Expect = 0.18
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 44 NNIRAVVGNATAGADA-ELIDALPKLEIVSSFSVG 77
+ R V+G+ AG E++D +E + +G
Sbjct: 174 DCPRVVLGSPLAGESLDEVLDPTWAIEEIVRRYIG 208
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 32.0 bits (72), Expect = 0.21
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 139 TTKFTGKTVGIIGLGRIGMAVAKRA 163
F G + ++G G +G +A
Sbjct: 14 NLYFQGMKIAVLGTGTVGRTMAGAL 38
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 31.8 bits (73), Expect = 0.29
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 144 GKTVGIIGLGRIG-MAVAKRAEAFSCPINYYSRTEK 178
G VG+ G G +G MAV K A A ++ ++R E
Sbjct: 177 GTKVGVAGFGGLGSMAV-KYAVAMGAEVSVFARNEH 211
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 31.3 bits (71), Expect = 0.31
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 12/94 (12%)
Query: 144 GKTVGIIGLGRIGMAVAKRAEAFSC-------PINYYSRTEKPNLKYKYYPSVVELASNC 196
G V ++GLGR GM +A+ A + +R + L + + E +
Sbjct: 157 GSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDI 216
Query: 197 HILVVACPLTEETRHIINREVIDALGPKGVLINI 230
I + P I+N+ V+ ++ PK +++++
Sbjct: 217 DICINTIP-----SMILNQTVLSSMTPKTLILDL 245
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 31.8 bits (73), Expect = 0.31
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 137 KLTTKFTGKTVGIIGLGRIGMAVAK 161
K T F K V ++GL R G A A+
Sbjct: 2 KTITTFENKKVLVLGLARSGEAAAR 26
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 31.2 bits (71), Expect = 0.35
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 136 YKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASN 195
+K K V + G G++G A+ A PI+ R + + + +N
Sbjct: 14 FKTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE--------SILAN 65
Query: 196 CHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
+++V+ P+ T I + L +L ++
Sbjct: 66 ADVVIVSVPI-NLTLETI-ERLKPYLTENMLLADLT 99
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent,
oxidoreductase; HET: NAP; 3.00A {Saccharomyces
cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Length = 360
Score = 31.4 bits (72), Expect = 0.37
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 144 GKTVGIIGLGRIG-MAVAKRAEAFSCPINYYSRTEK 178
GK VGI+GLG IG M ++A SR+ +
Sbjct: 180 GKKVGIVGLGGIGSMGT-LISKAMGAETYVISRSSR 214
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 31.0 bits (71), Expect = 0.40
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 144 GKTVGIIGLGRIG-MAVAKRAEAFSCPINYYSRTEK 178
GK VG++G+G +G M + K A A + ++ +E
Sbjct: 195 GKKVGVVGIGGLGHMGI-KLAHAMGAHVVAFTTSEA 229
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 31.1 bits (71), Expect = 0.44
Identities = 20/117 (17%), Positives = 45/117 (38%), Gaps = 14/117 (11%)
Query: 126 VRSGKWKKGDYKLTTKFTGKTVGIIGLGRIG--MAVAKRAEAFSCPINYYSRTEKPNLKY 183
V G K K+ + + V I+G+G +G A + R F I Y + ++
Sbjct: 15 VPRGSHMKNIIKILKSLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE-SISK 73
Query: 184 --------KYYPSVVELA-SNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
+ S+ ++ + ++++ P+ R I +++ L + + G
Sbjct: 74 AVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA-KKLSYILSEDATVTDQG 128
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 30.6 bits (68), Expect = 0.47
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 128 SGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA 163
S K + F G + I G G +G A+
Sbjct: 3 SDKIHHHHHHENLYFQGMEITIFGKGNMGQAIGHNF 38
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 29.9 bits (68), Expect = 0.48
Identities = 3/18 (16%), Positives = 7/18 (38%)
Query: 145 KTVGIIGLGRIGMAVAKR 162
+IG G+ + +
Sbjct: 7 YEYIVIGSEAAGVGLVRE 24
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 30.6 bits (70), Expect = 0.55
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 144 GKTVGIIGLGRIG-MAVAKRAEAFSCPINYYSRTEK 178
G GI+GLG +G M V K A+A + S + K
Sbjct: 181 GLRGGILGLGGVGHMGV-KIAKAMGHHVTVISSSNK 215
>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics,
pyrroline reductase, oxidoredu structural genomics
consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}
Length = 262
Score = 30.2 bits (69), Expect = 0.66
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 143 TGKTVGIIGLGRIGMAVAK---RAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHIL 199
+G +GLG++G A+A A +Y K N Y S ELA +C I+
Sbjct: 3 ENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKNTTLNYMSSNEELARHCDII 62
Query: 200 VVA 202
V A
Sbjct: 63 VCA 65
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 30.2 bits (69), Expect = 0.68
Identities = 16/98 (16%), Positives = 39/98 (39%), Gaps = 14/98 (14%)
Query: 145 KTVGIIGLGRIG--MAVAKRAEAFSCPINYYSRTEKPNLKY--------KYYPSVVELA- 193
+ V I+G+G +G A + R F I Y + ++ + S+ ++
Sbjct: 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPE-SISKAVDLGIIDEGTTSIAKVED 60
Query: 194 SNCHILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
+ ++++ P+ R I +++ L + + G
Sbjct: 61 FSPDFVMLSSPV-RTFREIA-KKLSYILSEDATVTDQG 96
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 30.2 bits (69), Expect = 0.83
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 144 GKTVGIIGLGRIG-MAVAKRAEAFSCPINYYSRTEK 178
GK +GI+GLG +G +AV K A+AF + S +
Sbjct: 188 GKHIGIVGLGGLGHVAV-KFAKAFGSKVTVISTSPS 222
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 29.8 bits (68), Expect = 1.2
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 142 FTGKTVGIIGLGRIGMAVAK 161
+ GK V IIGLG G++
Sbjct: 3 YQGKNVVIIGLGLTGLSCVD 22
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 29.7 bits (67), Expect = 1.3
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 19 ELERRFNLFKFWTVSDKTQFLKAQ-----QNNIRAVVGNATAGADAELIDALPKLEIVS 72
L RRF K W V L+ Q +IR A +L A + E+ +
Sbjct: 349 PLGRRFRALKLWFV------LRLYGVENLQAHIRRHCNFAKQF--GDLCVADSRFELAA 399
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 28.9 bits (64), Expect = 2.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 147 VGIIGLGRIGMAVAKRAEA 165
VG+IG G IG +A+ E
Sbjct: 3 VGLIGYGAIGKFLAEWLER 21
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein
structure initiative, joint center for structural G
oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Length = 253
Score = 28.8 bits (64), Expect = 2.3
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 147 VGIIGLGRIGMAVAKRAEA 165
V IIG+G IG + +
Sbjct: 15 VLIIGMGNIGKKLVELGNF 33
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 28.9 bits (65), Expect = 2.4
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 13/59 (22%)
Query: 19 ELERRFNLFKFWTVSDKTQFLKAQ-----QNNIRAVVGNATAGADAELIDALPKLEIVS 72
L RRF K W V +++ Q ++R A L+ P EI +
Sbjct: 356 PLSRRFRSVKLWFV------IRSFGVKNLQAHVRHGTEMAKYF--ESLVRNDPSFEIPA 406
>3l9a_X Uncharacterized protein; phage-associated, hypothetical protein,
CHAP domain, structural genomics, PSI-2, protein
structure initiative; HET: MSE GOL; 1.30A
{Streptococcus mutans}
Length = 88
Score = 27.0 bits (59), Expect = 2.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 29 FWTVSDKTQFLKAQQNNIRAVVGNAT 54
FW ++D+ F+K NI V NA+
Sbjct: 42 FWVIADQENFIKQVNKNIEYVEKNAS 67
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 28.5 bits (64), Expect = 2.7
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 13/59 (22%)
Query: 19 ELERRFNLFKFWTVSDKTQFLKAQ-----QNNIRAVVGNATAGADAELIDALPKLEIVS 72
L RRF K W V + Q IR V + + P+ E+ +
Sbjct: 352 PLGRRFRSLKMWFV------FRMYGVKGLQAYIRKHVQLSHEF--EAFVLQDPRFEVCA 402
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 28.4 bits (64), Expect = 3.5
Identities = 6/59 (10%), Positives = 20/59 (33%), Gaps = 13/59 (22%)
Query: 19 ELERRFNLFKFWTVSDKTQFLKAQ-----QNNIRAVVGNATAGADAELIDALPKLEIVS 72
+RF+ K + ++ + ++ A++I + E+++
Sbjct: 370 ATTKRFDALKVFMT------MQNVGPKALGDMYDHLLAQTLEV--ADMIRTNDQFELLA 420
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol
dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE;
1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A*
3nto_A* 3ntq_A* 3ntr_A*
Length = 344
Score = 28.1 bits (63), Expect = 3.7
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 14/82 (17%)
Query: 147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLT 206
+G+IG G IG + ++ + + + +
Sbjct: 5 IGVIGTGAIG---KEHIN------RITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVY 55
Query: 207 EETRHIINREVIDALGPKGVLI 228
++ E +DA VL+
Sbjct: 56 PNDDSLLADENVDA-----VLV 72
>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea,
hyperthermophIle, GAPDH, hyperthermophilic dehydrog
oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP:
c.2.1.3 d.81.1.1
Length = 340
Score = 28.2 bits (62), Expect = 4.2
Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 15/100 (15%)
Query: 145 KTVGIIGLGRIGM----AVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILV 200
V + G G IG A+ K+ + + K + Y+ + + I V
Sbjct: 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVA------KTSPNYEAFIAHRR---GIRIYV 52
Query: 201 V--ACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDE 238
+ EE+ + V D + ++++ +
Sbjct: 53 PQQSIKKFEESGIPVAGTVEDLIKTSDIVVDTTPNGVGAQ 92
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD;
2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 27.9 bits (63), Expect = 4.4
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 144 GKTVGIIGLGRIGMAVA 160
+ +GIIGLG +G AVA
Sbjct: 1 ARKIGIIGLGNVGAAVA 17
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 28.1 bits (63), Expect = 4.5
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 13/59 (22%)
Query: 19 ELERRFNLFKFWTVSDKTQFLKAQ-----QNNIRAVVGNATAGADAELIDALPKLEIVS 72
+ RR + K W + KAQ + I A E + E+V
Sbjct: 377 QCGRRVDCLKLWLM------WKAQGDQGLERRIDQAFVLARYL--VEEMKKREGFELVM 427
>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase,
proline biosynthesis, NAD(P protein, rossmann fold,
doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes}
SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A
Length = 259
Score = 27.9 bits (63), Expect = 4.5
Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 143 TGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK------YYPSVVELASNC 196
+GIIG+G++ A+ K + + + + + + Y S +L
Sbjct: 2 NAMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQV 61
Query: 197 HILVVAC-PLTEETRHIINREVIDALGPKGVLINI 230
++++ P + V+ L K +I++
Sbjct: 62 DLVILGIKP------QLF-ETVLKPLHFKQPIISM 89
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 27.5 bits (61), Expect = 4.6
Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 10/80 (12%)
Query: 198 ILVVACPLTEETRHIINREVIDALGPKGVLI---------NIGRGPHVDERELVS-ALVE 247
I+ + C L R + +V L P GV I G D L ++
Sbjct: 98 IVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLDLLPKLETLQ 157
Query: 248 GRLGGAGLDVFENEPHVPEE 267
L + N +E
Sbjct: 158 SELPSLNWLIANNLERNLDE 177
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 28.0 bits (63), Expect = 4.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 144 GKTVGIIGLGRIGMAVA 160
G T + GLG +G+A
Sbjct: 193 GSTCAVFGLGAVGLAAV 209
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 27.7 bits (61), Expect = 4.8
Identities = 11/94 (11%), Positives = 35/94 (37%), Gaps = 7/94 (7%)
Query: 143 TGKTVGIIGL-GRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK----YYPSVVELASNCH 197
KTV I+G G++G + ++ + + + + +
Sbjct: 10 GPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEAD 69
Query: 198 ILVVACPLTEETRHIINREVIDALGPKGVLINIG 231
++V+A P + + +++ + P +++ +
Sbjct: 70 VVVLALPDNIIEK--VAEDIVPRVRPGTIVLILD 101
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 27.9 bits (63), Expect = 4.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 144 GKTVGIIGLGRIGMAVA 160
G + GLG +G+AV
Sbjct: 191 GSVCAVFGLGGVGLAVI 207
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 27.9 bits (63), Expect = 4.9
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 144 GKTVGIIGLGRIGMAV---AKRAEA 165
G T + GLG +G++V K A A
Sbjct: 192 GSTCAVFGLGGVGLSVIMGCKAAGA 216
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 27.9 bits (63), Expect = 5.1
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 143 TGKTVGIIGLGRIGMAVA 160
G +VG+IG G G+A A
Sbjct: 121 LGLSVGVIGAGPAGLAAA 138
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 27.5 bits (61), Expect = 5.7
Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 10/110 (9%)
Query: 127 RSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKR-AEAFSCPINYYSRTEKPNLKY-- 183
S G L + +G IG G A+A +A + + Y + +
Sbjct: 7 HSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRA 66
Query: 184 -----KYYPSVVELASNCHILVVACPLTEETRHIINREVIDALGPKGVLI 228
SV E+A C ++ ++ L +
Sbjct: 67 EELGVSCKASVAEVAGECDVIFSLVTAQAALEVA--QQAGPHLCEGALYA 114
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 27.6 bits (62), Expect = 5.8
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 144 GKTVGIIGLGRIGMAVA 160
G T + GLG +G +
Sbjct: 192 GSTCAVFGLGGVGFSAI 208
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 27.6 bits (62), Expect = 5.9
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 3/25 (12%)
Query: 144 GKTVGIIGLGRIGMAV---AKRAEA 165
G T + GLG +G++ K A A
Sbjct: 196 GSTCAVFGLGCVGLSAIIGCKIAGA 220
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi
DSS, structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Length = 286
Score = 27.5 bits (61), Expect = 5.9
Identities = 3/21 (14%), Positives = 7/21 (33%)
Query: 145 KTVGIIGLGRIGMAVAKRAEA 165
T+ G G +++
Sbjct: 6 GTLLSFGHGYTARVLSRALAP 26
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2,
protein structure in midwest center for structural
genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella
typhimurium}
Length = 357
Score = 27.7 bits (62), Expect = 5.9
Identities = 10/82 (12%), Positives = 23/82 (28%), Gaps = 14/82 (17%)
Query: 147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLT 206
GI+G+G IG + + + + +
Sbjct: 26 AGIVGIGMIG---SDHLR------RLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDY 76
Query: 207 EETRHIINREVIDALGPKGVLI 228
+ +IN + ++ V+I
Sbjct: 77 NDYHDLINDKDVEV-----VII 93
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 27.6 bits (61), Expect = 6.1
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 145 KTVGIIGLGRIGMAVAKR 162
T+ IG G ++A
Sbjct: 25 TTIAFIGFGEAAQSIAGG 42
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 27.3 bits (60), Expect = 6.7
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 203 CPLTEETRHIINREVIDALGPKGVLINIGRGPHVDE----RELVSALVEGRLGGAGLDVF 258
C + E R + + + L P G LI + ++ + E L G
Sbjct: 143 CAIEPEMRPAWAKSMYELLKPDGELITLMYPITDHVGGPPYKVDVSTFEEVLVPIGFKAV 202
Query: 259 ENEP 262
E
Sbjct: 203 SVEE 206
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 27.6 bits (61), Expect = 6.8
Identities = 3/15 (20%), Positives = 6/15 (40%), Gaps = 1/15 (6%)
Query: 11 PMNTYLEQELERRFN 25
P+ E+E+
Sbjct: 3009 PLFRCFEREIS-TGG 3022
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP,
oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo
sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Length = 322
Score = 27.2 bits (61), Expect = 7.2
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 19/94 (20%)
Query: 142 FTGKTVGIIGLGRIGMAVAK---RAEAFS------CPINYYSRTEKPNLKY--KYYPSVV 190
F +VG IG G++ A+AK A + + T K K P
Sbjct: 20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNK 79
Query: 191 ELASNCHILVVAC-PLTEETRHIINREVIDALGP 223
E + +L +A P HII ++D +G
Sbjct: 80 ETVQHSDVLFLAVKP------HII-PFILDEIGA 106
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 27.2 bits (61), Expect = 8.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 144 GKTVGIIGLGRIGMAVA 160
GKTV I G G +G+
Sbjct: 196 GKTVVIQGAGPLGLFGV 212
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA
NAD-binding rossmann fold, structural genomics; HET:
NAD; 2.40A {Lactobacillus plantarum WCFS1}
Length = 346
Score = 26.9 bits (60), Expect = 8.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 147 VGIIGLGRIG 156
IIGLGR+G
Sbjct: 11 AAIIGLGRLG 20
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2,
protein structure initiative; 2.04A {Thermotoga
maritima}
Length = 344
Score = 26.8 bits (60), Expect = 8.5
Identities = 8/10 (80%), Positives = 10/10 (100%)
Query: 147 VGIIGLGRIG 156
+G+IGLGRIG
Sbjct: 5 IGVIGLGRIG 14
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein
structure initiativ midwest center for structural
genomics; 2.50A {Bordetella bronchiseptica}
Length = 387
Score = 27.1 bits (60), Expect = 9.4
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 147 VGIIGLGRIGMAVAKRAEA 165
GI GLG G + A
Sbjct: 5 FGICGLGFAGSVLMAPAMR 23
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.401
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,909,596
Number of extensions: 311807
Number of successful extensions: 1140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 125
Length of query: 313
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 220
Effective length of database: 4,105,140
Effective search space: 903130800
Effective search space used: 903130800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)