RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021388
(313 letters)
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 191
Score = 161 bits (408), Expect = 1e-49
Identities = 64/190 (33%), Positives = 97/190 (51%), Gaps = 7/190 (3%)
Query: 100 LTDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYK--LTTKFTGKTVGIIGLGRIGM 157
+T A++A+ L+L RR E ++ +R+ W + + K KT+GI G G IG
Sbjct: 1 VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ 60
Query: 158 AVAKRAEAFSCPINYYSRTEKPNLKYK-----YYPSVVELASNCHILVVACPLTEETRHI 212
A+AKRA+ F I+Y+ + ++ S+ L S + P T ETR+
Sbjct: 61 ALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYF 120
Query: 213 INREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLE 272
N+ I +L +++N RG VD +V+AL GRL AG DVF EP++ E + L
Sbjct: 121 FNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLP 180
Query: 273 NVVLMPHVGS 282
N L PH+GS
Sbjct: 181 NTFLFPHIGS 190
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 138 bits (348), Expect = 9e-41
Identities = 64/184 (34%), Positives = 94/184 (51%), Gaps = 4/184 (2%)
Query: 101 TDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVA 160
A+ A+ L+LA R++ +D +R WK+ + T+ GKTVG++GLGRIG VA
Sbjct: 2 IHSAAEHALALLLAASRQIPAADASLREHTWKRSSFS-GTEIFGKTVGVVGLGRIGQLVA 60
Query: 161 KRAEAFSCPINYYSRTEKPNLKYK---YYPSVVELASNCHILVVACPLTEETRHIINREV 217
+R AF + Y P + S+ +L + + V P T ET +I++E
Sbjct: 61 QRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEA 120
Query: 218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEELFGLENVVLM 277
+ P +++N RG VDE L A+ G + AGLDVF EP LF L VV+
Sbjct: 121 LAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVT 180
Query: 278 PHVG 281
PH+G
Sbjct: 181 PHLG 184
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 134 bits (337), Expect = 4e-39
Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 7/187 (3%)
Query: 101 TDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVA 160
T VA+L IG +L +LR + E++ G K + + GK +GIIG G IG +
Sbjct: 2 TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAG-SFEARGKKLGIIGYGHIGTQLG 60
Query: 161 KRAEAFSCPINYYSRTEKPNLKY-KYYPSVVELASNCHILVVACPLTEETRHIINREVID 219
AE+ + +Y K L + +L + ++ + P T++++ + I
Sbjct: 61 ILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEIS 120
Query: 220 ALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE-----LFGLENV 274
+ P +LIN RG VD L AL L GA +DVF EP + L +NV
Sbjct: 121 LMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNV 180
Query: 275 VLMPHVG 281
+L PH+G
Sbjct: 181 LLTPHIG 187
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp.,
strain 101 [TaxId: 306]}
Length = 188
Score = 125 bits (315), Expect = 6e-36
Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 7/185 (3%)
Query: 104 VADLAIGLMLAVLRRLCESDRYVRSGKWKKGDY-KLTTKFTGKTVGIIGLGRIGMAVAKR 162
VA+ + ++L+++R S + R G W D VG + GRIG+AV +R
Sbjct: 3 VAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRR 62
Query: 163 AEAFSCPINYYSRT-----EKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREV 217
F ++Y R + L ++ + ++ C ++ + CPL ET H+IN E
Sbjct: 63 LAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET 122
Query: 218 IDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE-ELFGLENVVL 276
+ ++N RG D + AL GRL G DV+ +P + + +
Sbjct: 123 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM 182
Query: 277 MPHVG 281
PH+
Sbjct: 183 TPHIS 187
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
(Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 193
Score = 123 bits (308), Expect = 8e-35
Identities = 58/192 (30%), Positives = 93/192 (48%), Gaps = 12/192 (6%)
Query: 102 DDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFT------GKTVGIIGLGRI 155
++ AD + +L + RR + +R G + ++ + G+T+GIIGLGR+
Sbjct: 1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60
Query: 156 GMAVAKRAEAFSCPINYYSRT----EKPNLKYKYYPSVVELASNCHILVVACPLTEETRH 211
G AVA RA+AF + +Y + L + ++ +L + + + C L E H
Sbjct: 61 GQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHH 120
Query: 212 IINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE--LF 269
+IN + + L+N RG VDE+ L AL EGR+ GA LDV E+EP + L
Sbjct: 121 LINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLK 180
Query: 270 GLENVVLMPHVG 281
N++ PH
Sbjct: 181 DAPNLICTPHAA 192
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 181
Score = 102 bits (253), Expect = 7e-27
Identities = 48/182 (26%), Positives = 80/182 (43%), Gaps = 5/182 (2%)
Query: 102 DDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAK 161
D VA+ A+ L+LA +R+ + ++ G + + G+ V ++GLG IG V K
Sbjct: 2 DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE--IPLIQGEKVAVLGLGEIGTRVGK 59
Query: 162 RAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEETRHIINREVIDAL 221
A + +SRT K +++ S+ E V A PL + TR ++ + + +
Sbjct: 60 ILAALGAQVRGFSRTPKEG-PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALM 118
Query: 222 GPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPE--ELFGLENVVLMPH 279
V +N+GR +D ++ L E DV+ + E F L NVV P
Sbjct: 119 AEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPW 178
Query: 280 VG 281
V
Sbjct: 179 VA 180
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
{Lactobacillus casei [TaxId: 1582]}
Length = 199
Score = 100 bits (249), Expect = 4e-26
Identities = 47/196 (23%), Positives = 87/196 (44%), Gaps = 15/196 (7%)
Query: 101 TDDVADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVA 160
+A+ A+ L +LR + + +++G ++K + + +TVG++G G IG
Sbjct: 2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAI 61
Query: 161 KRAEAFSCPINYYSRTEKPNLKYKYYPS-VVELASNCHILVVACPLTEETRHIINREVID 219
K + F + Y + + +L ++ + P E+ HIIN +
Sbjct: 62 KLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFN 121
Query: 220 ALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEP--------------HVP 265
+ P ++IN R +D + ++S L G+L G G+D +E E +
Sbjct: 122 LMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLW 181
Query: 266 EELFGLENVVLMPHVG 281
+EL G+ NVVL PH+
Sbjct: 182 DELLGMPNVVLSPHIA 197
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus
helveticus [TaxId: 1587]}
Length = 197
Score = 92.9 bits (229), Expect = 3e-23
Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 17/194 (8%)
Query: 104 VADLAIGLMLAVLRRLCESDRYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRA 163
+A+ A +LR+ D V + + + + VG++G G IG +
Sbjct: 4 IAEHAAIQAARILRQDKAMDEKVARHDLRWAPT-IGREVRDQVVGVVGTGHIGQVFMQIM 62
Query: 164 EAFSCPINYYSRTEKPNLKYKYYPSVVELASNCH--ILVVACPLTEETRHIINREVIDAL 221
E F + Y P L+ K Y ++ + P H+IN E I +
Sbjct: 63 EGFGAKVITYDIFRNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKM 122
Query: 222 GPKGVLINIGRGPHVDERELVSALVEGRLGGAGLDVFENEPHVPEE-------------- 267
V++N+ RGP VD ++ L G++ G +DV+E E + E
Sbjct: 123 KQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLAD 182
Query: 268 LFGLENVVLMPHVG 281
L NV++ P
Sbjct: 183 LIARPNVLVTPKTA 196
>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase
{Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Length = 121
Score = 76.2 bits (187), Expect = 6e-18
Identities = 17/161 (10%), Positives = 42/161 (26%), Gaps = 43/161 (26%)
Query: 6 VLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL 65
+ + + E+EL + F + + + + + AE + +
Sbjct: 3 LYVNFELPPEAEEELRKYFKIVRGGDLGNVEAA--------------LVSRITAEELAKM 48
Query: 66 PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRY 125
P+L+ + + GLD + V + +++ +R
Sbjct: 49 PRLKFIQVVTAGLDHLPWESIPPHVT-VAGNAGSNGYGNERVWRQMVMEAVR-------- 99
Query: 126 VRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAF 166
+ G +AKR +
Sbjct: 100 --------------------NLITYATGGRPRNIAKREDYI 120
>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 130
Score = 72.5 bits (177), Expect = 2e-16
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 2/127 (1%)
Query: 6 VLMACPMNTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDAL 65
VL+A + L + ++ D+ + L A A++ + DAE++ A
Sbjct: 5 VLIADKLAPSTVAALGDQVE-VRWVDGPDRDKLLAAVPE-ADALLVRSATTVDAEVLAAA 62
Query: 66 PKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRY 125
PKL+IV+ VGLD VD+ +GV V N P + A G +A RL + +
Sbjct: 63 PKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEF 122
Query: 126 VRSGKWK 132
V
Sbjct: 123 VPDAVNV 129
>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 129
Score = 69.6 bits (170), Expect = 2e-15
Identities = 22/116 (18%), Positives = 48/116 (41%), Gaps = 2/116 (1%)
Query: 6 VLMACPMNTYLEQELERRFNLFKFWTVSDKTQ-FLKAQQNNIRAVVGNATAGADAELIDA 64
+L+ P+ +++ T + ++ A++ E+ID
Sbjct: 4 ILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDR 63
Query: 65 LP-KLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRL 119
+P ++ +S++S+G D +D+ CK +G++V N P T D+A +
Sbjct: 64 IPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALF 119
>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor
CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 133
Score = 65.7 bits (160), Expect = 6e-14
Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 1/117 (0%)
Query: 16 LEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALPKLEIVSSFS 75
+E + + F + + N + T E ++ L I+
Sbjct: 14 VEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKALRIIVRIG 73
Query: 76 VGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWK 132
G D +D+ + G+ V N P +I + R + + K
Sbjct: 74 SGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAITGRIPDSLK 129
>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate
dehydrogenase {Lactobacillus casei [TaxId: 1582]}
Length = 131
Score = 62.8 bits (152), Expect = 6e-13
Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 2/84 (2%)
Query: 48 AVVGNATAGADAELIDA--LPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVA 105
+ T A + + ++ ++ +VG D +DM K+ G+R++N P V
Sbjct: 47 GINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVH 106
Query: 106 DLAIGLMLAVLRRLCESDRYVRSG 129
++ + ++ L + +
Sbjct: 107 NMVYFSLQHLVDFLTKGETSTEVT 130
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
{Pseudomonas sp., strain 101 [TaxId: 306]}
Length = 186
Score = 63.4 bits (154), Expect = 9e-13
Identities = 13/82 (15%), Positives = 24/82 (29%), Gaps = 8/82 (9%)
Query: 58 DAELIDALPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLR 117
E I L++ + +G D VD+ ++ V V + + A
Sbjct: 104 TPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREI 163
Query: 118 RLCESD--------RYVRSGKW 131
C + V+ G
Sbjct: 164 LECFFEGRPIRDEYLIVQGGAL 185
>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase
{Lactobacillus helveticus [TaxId: 1587]}
Length = 134
Score = 59.6 bits (144), Expect = 9e-12
Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 5/120 (4%)
Query: 15 YLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDALP--KLEIVS 72
+L++ + ++ +T T A VV AE + AL + +S
Sbjct: 15 FLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMS 74
Query: 73 SFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDRYVRSGKWK 132
+VG+D +DM K KE G ++TN P A+ M+ + +
Sbjct: 75 LRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNLELVEGKEAETP 131
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 132
Score = 50.1 bits (119), Expect = 2e-08
Identities = 19/125 (15%), Positives = 51/125 (40%), Gaps = 1/125 (0%)
Query: 6 VLMACPMNTYLEQELERR-FNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELIDA 64
L+ ++ + L + +F + + LK + + + ++I+A
Sbjct: 7 FLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINA 66
Query: 65 LPKLEIVSSFSVGLDKVDMVKCKEKGVRVTNTPDVLTDDVADLAIGLMLAVLRRLCESDR 124
KL + +F++G ++VD+ ++G+ V N P T + + + L + ++
Sbjct: 67 AEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIKYSDNGS 126
Query: 125 YVRSG 129
+ +
Sbjct: 127 TLSAV 131
>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 47.6 bits (113), Expect = 2e-07
Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 1/119 (0%)
Query: 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVV 201
GK + G G +G A+ F + L+ V
Sbjct: 22 IAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGN 81
Query: 202 ACPLTEETRHIINREVIDALGPKGVLINIG-RGPHVDERELVSALVEGRLGGAGLDVFE 259
T II + + ++ NIG +D + L VE +D +
Sbjct: 82 IFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR 140
>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1
{Salmonella typhimurium [TaxId: 90371]}
Length = 113
Score = 39.7 bits (92), Expect = 6e-05
Identities = 14/105 (13%), Positives = 29/105 (27%), Gaps = 9/105 (8%)
Query: 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN----LKYKYYPSVVELASNC 196
+ + I+G G + A+ + + T P V
Sbjct: 9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDET 68
Query: 197 HILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDEREL 241
+ + +N+ V DA + + N+ VD +
Sbjct: 69 LLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV-----VDAPKA 108
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643
{Thermotoga maritima [TaxId: 2336]}
Length = 132
Score = 37.0 bits (85), Expect = 7e-04
Identities = 13/101 (12%), Positives = 22/101 (21%), Gaps = 9/101 (8%)
Query: 147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLT 206
V IIG+G IG + + + P + E + V
Sbjct: 5 VLIIGMGNIGKKLVELGNFEKIYAYDRISKDIPG-----VVRLDEFQVPSDVSTVVEC-- 57
Query: 207 EETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVE 247
+E + V I +
Sbjct: 58 --ASPEAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFS 96
>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId:
1423]}
Length = 134
Score = 36.1 bits (82), Expect = 0.002
Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 21/137 (15%)
Query: 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK--PNLKYKYYPSVVELASNCHILVV- 201
K +IGLGR G ++ K + E+ +V+ A+ + L+
Sbjct: 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSL 60
Query: 202 ------ACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGL 255
+ + L + + + ++ L G
Sbjct: 61 GIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKV--------LEKIGA 112
Query: 256 DVFENEPHVPEELFGLE 272
D + PE+ G++
Sbjct: 113 DRIIH----PEKDMGVK 125
>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate
ligase MurD {Escherichia coli [TaxId: 562]}
Length = 93
Score = 34.3 bits (78), Expect = 0.003
Identities = 11/39 (28%), Positives = 14/39 (35%)
Query: 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN 180
+ GK V IIGLG G++ A P
Sbjct: 3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP 41
>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase
{Salmonella typhimurium [TaxId: 90371]}
Length = 161
Score = 34.4 bits (78), Expect = 0.007
Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN-----LKYKYYPSVVELASNCHILVV 201
VG IGLG +G ++K + R + + + +A C +++
Sbjct: 3 VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 62
Query: 202 ACPLTEETRHIINRE--VIDALGPKGVLINIGRGPHVDERELVSALVE 247
P + + + E +I+ P VLI++ + RE+ AL
Sbjct: 63 MLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKA 110
>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 165
Score = 32.8 bits (73), Expect = 0.028
Identities = 12/51 (23%), Positives = 20/51 (39%)
Query: 147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCH 197
+G++GLG IG ++A + SR + K V E +
Sbjct: 3 IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLS 53
>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep
(Ovis orientalis aries) [TaxId: 9940]}
Length = 176
Score = 32.3 bits (72), Expect = 0.040
Identities = 10/107 (9%), Positives = 30/107 (28%), Gaps = 12/107 (11%)
Query: 147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK------------PNLKYKYYPSVVELAS 194
+ +IGL +G + + ++RT + + +
Sbjct: 5 IALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKL 64
Query: 195 NCHILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDEREL 241
++ + +++ L ++I+ G + D
Sbjct: 65 KKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRR 111
>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase
{Rhodococcus sp., M4 [TaxId: 1831]}
Length = 201
Score = 31.3 bits (70), Expect = 0.10
Identities = 11/75 (14%), Positives = 19/75 (25%)
Query: 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVV 201
G TV + GLG +G ++A A + + +
Sbjct: 25 LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPC 84
Query: 202 ACPLTEETRHIINRE 216
+I E
Sbjct: 85 DVFAPCAMGGVITTE 99
>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 162
Score = 30.6 bits (68), Expect = 0.15
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 145 KTVGIIGLGRIGMAVAKR 162
K + IGLG +G +A
Sbjct: 2 KQIAFIGLGHMGAPMATN 19
>d2akja4 d.134.1.1 (A:175-345) Ferredoxin--nitrite reductase, NIR
{Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 171
Score = 30.4 bits (68), Expect = 0.16
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 45 NIRAVVGNATAGADA-ELIDALPKLEIVSSFS 75
N+R VGN AG D E++D P ++S F
Sbjct: 3 NVRNPVGNPLAGIDPHEIVDTRPFTNLISQFV 34
>d1zj8a4 d.134.1.1 (A:162-326) Sulfite reductase NirA
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 165
Score = 30.4 bits (68), Expect = 0.16
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 44 NNIRAVVGNATAGADA-ELIDALPKLEIVSSFSVG 77
+ R V+G+ AG E++D +E + +G
Sbjct: 2 DCPRVVLGSPLAGESLDEVLDPTWAIEEIVRRYIG 36
>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 152
Score = 30.2 bits (67), Expect = 0.16
Identities = 10/69 (14%), Positives = 18/69 (26%), Gaps = 7/69 (10%)
Query: 147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYK-------YYPSVVELASNCHIL 199
VG IG G + +A R + + P+ + + I
Sbjct: 3 VGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVIS 62
Query: 200 VVACPLTEE 208
V +
Sbjct: 63 AVTPGVALG 71
>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid
dehydrogenase (DAPDH) {Corynebacterium glutamicum
[TaxId: 1718]}
Length = 170
Score = 30.2 bits (67), Expect = 0.19
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Query: 147 VGIIGLGRIGMAVAKRAEAFS----CPINYYSRTEKPNLKYKYYPSVVELASNCHILVVA 202
V I+G G +G +V K I T V + A + +L +
Sbjct: 6 VAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTKTPVFDVADVDKHADDVDVLFLC 65
Query: 203 CP 204
Sbjct: 66 MG 67
>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 132
Score = 29.9 bits (66), Expect = 0.19
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSV 189
+ I G+GR+G +AK I + K
Sbjct: 3 IIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDA 45
>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase
{Trypanosoma brucei [TaxId: 5691]}
Length = 178
Score = 30.0 bits (66), Expect = 0.26
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKP 179
VG++GLG +G +A + ++RT
Sbjct: 4 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSK 36
>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA
dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 29.9 bits (66), Expect = 0.29
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 1/76 (1%)
Query: 141 KFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYP-SVVELASNCHIL 199
K K V +IG G +G +A+ A A + +TE K K + +
Sbjct: 1 KIIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFA 60
Query: 200 VVACPLTEETRHIINR 215
E ++
Sbjct: 61 ENPKAGDEFVEKTLST 76
>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex
aeolicus [TaxId: 63363]}
Length = 171
Score = 29.6 bits (65), Expect = 0.31
Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 10/148 (6%)
Query: 145 KTVGIIGLGRIGMAVAK--RAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHIL--- 199
+ V I+G+G +G + AK R F I Y + K + E ++ +
Sbjct: 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDF 61
Query: 200 ---VVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSALVEGRLGGAGLD 256
V T I +++ L + + G +L + L + +GG +
Sbjct: 62 SPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIA 121
Query: 257 VFENEP--HVPEELFGLENVVLMPHVGS 282
E + + L+ + V+L P +
Sbjct: 122 GTEKSGVEYSLDNLYEGKKVILTPTKKT 149
>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga
maritima [TaxId: 2336]}
Length = 153
Score = 28.8 bits (63), Expect = 0.49
Identities = 6/63 (9%), Positives = 18/63 (28%), Gaps = 5/63 (7%)
Query: 147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK-----PNLKYKYYPSVVELASNCHILVV 201
+ +G G + + + SR+ + ++ + ++ V
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFV 61
Query: 202 ACP 204
P
Sbjct: 62 IVP 64
>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline
dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}
Length = 184
Score = 29.1 bits (64), Expect = 0.50
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEK 178
KT ++GLG G A A + + +
Sbjct: 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQ 35
>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus
thermophilus [TaxId: 274]}
Length = 156
Score = 27.9 bits (61), Expect = 1.0
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 147 VGIIGLGRIGMAVAKR 162
V IGLG +G +A
Sbjct: 3 VAFIGLGAMGYPMAGH 18
>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 172
Score = 27.5 bits (60), Expect = 1.4
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 147 VGIIGLGRIGMAVAK-----RAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCH 197
V ++G+GR G + R+ AF I + SR E +L S+ + +
Sbjct: 10 VVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQE 65
>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice
blast fungus (Magnaporthe grisea) [TaxId: 148305]}
Length = 182
Score = 27.7 bits (60), Expect = 1.4
Identities = 7/39 (17%), Positives = 13/39 (33%)
Query: 144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLK 182
K+V ++G G + + RT + K
Sbjct: 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKK 40
>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Streptococcus pyogenes [TaxId: 1314]}
Length = 152
Score = 27.3 bits (59), Expect = 1.6
Identities = 9/72 (12%), Positives = 29/72 (40%)
Query: 147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLT 206
+GIIG+G++ A+ K + + + + + + ++ S+ ++ +
Sbjct: 3 IGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVI 62
Query: 207 EETRHIINREVI 218
+ + V+
Sbjct: 63 LGIKPQLFETVL 74
>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase
{Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}
Length = 163
Score = 27.1 bits (60), Expect = 1.7
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 11/108 (10%)
Query: 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY----KYYPSVVELASNCH 197
+GK V I G G +G A + + ++ ++ E+
Sbjct: 21 ISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGD 80
Query: 198 ILVVACPLTEETRHIINREVIDALGPKGVLINIGRGPHVDERELVSAL 245
+ +I E + + V+ NIG H D+ V+ L
Sbjct: 81 FFI----TCTGNVDVIKLEHLLKMKNNAVVGNIG---HFDDEIQVNEL 121
>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 171
Score = 27.2 bits (60), Expect = 1.7
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 145 KTVGIIGLGRIGMAVAKRAEA 165
K V I G G +G VA
Sbjct: 2 KAVAINGYGTVGKRVADAIAQ 22
>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase
{Thermobifida fusca [TaxId: 2021]}
Length = 235
Score = 27.8 bits (60), Expect = 1.7
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 124 RYVRSGKWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKY 183
+G W F+G+ VG+IG G G+ V+ + + + + RT +
Sbjct: 16 NLYHTGNWPHEP----VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPA 71
Query: 184 KYYP 187
+ P
Sbjct: 72 RNAP 75
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum
islandicum [TaxId: 2277]}
Length = 242
Score = 27.5 bits (60), Expect = 1.9
Identities = 13/44 (29%), Positives = 16/44 (36%)
Query: 137 KLTTKFTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPN 180
KL GKTV I G+G +G A E + S
Sbjct: 24 KLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVA 67
>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase
At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 184
Score = 27.3 bits (59), Expect = 2.2
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 147 VGIIGLGRIGMAVAK 161
+G++G I V++
Sbjct: 4 IGVMGCADIARKVSR 18
>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos
taurus) [TaxId: 9913]}
Length = 293
Score = 27.4 bits (60), Expect = 2.6
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 130 KWKKGDYKLTTKFTGKTVGIIGLGRIGMAVAK 161
+T F KT + G G +G+ +
Sbjct: 22 ASYMSILGMTPGFGDKTFAVQGFGNVGLHSMR 53
>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 172
Score = 26.5 bits (58), Expect = 3.0
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 147 VGIIGLGRIGMAVAKRAEA 165
VG+ G G IG VA
Sbjct: 5 VGVNGYGTIGKRVAYAVTK 23
>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 264
Score = 26.8 bits (59), Expect = 3.0
Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 140 TKFTGKTVGIIGLGR-IGMAVAKR 162
T+F K I G IG A A
Sbjct: 1 TRFAEKVAIITGSSNGIGRATAVL 24
>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 148
Score = 26.2 bits (57), Expect = 3.3
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 144 GKTVGIIGLGRIGMAVA 160
G V +IG G +G +
Sbjct: 6 GARVVVIGAGFVGASYV 22
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella
flexneri [TaxId: 623]}
Length = 255
Score = 26.9 bits (59), Expect = 3.3
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 13 NTYLEQELERRFNLFKFWTVSDKTQFLKAQQNNIRAVVGNATAGADAELI 62
N +LEQ+L+++F L VS + A++G A L+
Sbjct: 2 NLWLEQQLKQKFGLKDVVVVSGND----EDEETQLAMMGLHGAQLLDRLL 47
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit,
middle domain {Pseudomonas fragi [TaxId: 296]}
Length = 186
Score = 26.4 bits (57), Expect = 3.4
Identities = 10/68 (14%), Positives = 23/68 (33%)
Query: 145 KTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACP 204
K ++G G +G +A ++ + PI E + + + + +
Sbjct: 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAK 64
Query: 205 LTEETRHI 212
+ E I
Sbjct: 65 MAEVLNGI 72
>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 178
Score = 26.5 bits (58), Expect = 3.5
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 147 VGIIGLGRIGMAVAK 161
V + G G IG VA
Sbjct: 4 VAVNGYGTIGKRVAD 18
>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM
{Escherichia coli [TaxId: 562]}
Length = 164
Score = 26.5 bits (57), Expect = 3.6
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 147 VGIIGLGRIGMAVAKRA 163
+G++GLG I
Sbjct: 4 IGVVGLGGIAQKAWLPV 20
>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase,
L-HICDH {Lactobacillus confusus [TaxId: 1583]}
Length = 146
Score = 25.8 bits (56), Expect = 4.2
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 145 KTVGIIGLGRIGMAVA 160
+ +GIIGLG +G AVA
Sbjct: 2 RKIGIIGLGNVGAAVA 17
>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose
oxidoreductase, N-terminal domain {Zymomonas mobilis
[TaxId: 542]}
Length = 221
Score = 26.2 bits (56), Expect = 4.3
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 147 VGIIGLGRIGMAVAKRA 163
I+GLG+ +
Sbjct: 36 YAIVGLGKYALNQILPG 52
>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus
aurantiacus [TaxId: 1108]}
Length = 142
Score = 25.8 bits (56), Expect = 4.7
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 145 KTVGIIGLGRIGMAVA 160
K + IIG G +G A
Sbjct: 2 KKISIIGAGFVGSTTA 17
>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 173
Score = 26.2 bits (57), Expect = 4.8
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 147 VGIIGLGRIGMAVAKRA 163
V I G GRIG + +
Sbjct: 4 VAINGYGRIGRNILRAH 20
>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine
dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 196
Score = 26.3 bits (56), Expect = 4.8
Identities = 3/21 (14%), Positives = 8/21 (38%)
Query: 143 TGKTVGIIGLGRIGMAVAKRA 163
+ ++G G ++ A
Sbjct: 3 YSAKIALLGAGPASISCASFL 23
>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus
sphaericus [TaxId: 1421]}
Length = 230
Score = 26.1 bits (57), Expect = 5.0
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 9/86 (10%)
Query: 142 FTGKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASN------ 195
G V + GLG + A+ K+ + + +A N
Sbjct: 37 LEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVT 96
Query: 196 CHILVVA---CPLTEETRHIINREVI 218
C I L + T + +VI
Sbjct: 97 CDIFAPCALGAVLNDFTIPQLKAKVI 122
>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 129
Score = 25.6 bits (55), Expect = 5.7
Identities = 5/55 (9%), Positives = 11/55 (20%)
Query: 149 IIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVAC 203
I G + + + + + V + L A
Sbjct: 5 ICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKAN 59
>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 166
Score = 25.8 bits (56), Expect = 5.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 147 VGIIGLGRIGMAVAKRA 163
+GI G GRIG V + A
Sbjct: 3 LGINGFGRIGRLVFRAA 19
>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312
{Thermotoga maritima [TaxId: 2336]}
Length = 181
Score = 25.6 bits (55), Expect = 5.9
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 147 VGIIGLGRIGMAVAKRA 163
+GI+G G + A
Sbjct: 6 LGIVGCGIAARELHLPA 22
>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {South China Sea lobster
(Palinurus versicolor) [TaxId: 150436]}
Length = 169
Score = 25.6 bits (56), Expect = 6.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 147 VGIIGLGRIGMAVAKRA 163
+GI G GRIG V + A
Sbjct: 3 IGINGFGRIGRLVLRAA 19
>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia
coli [TaxId: 562]}
Length = 167
Score = 25.7 bits (55), Expect = 6.9
Identities = 5/40 (12%), Positives = 12/40 (30%)
Query: 147 VGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYY 186
+ ++G G +G + + R +P
Sbjct: 3 ITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLV 42
>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 25.2 bits (54), Expect = 7.1
Identities = 4/72 (5%), Positives = 18/72 (25%), Gaps = 5/72 (6%)
Query: 149 IIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVACPLTEE 208
+ G + + + + S + ++K + + + ++
Sbjct: 8 VCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQ-----LEQRLGDNADVIPGDSNDSS 62
Query: 209 TRHIINREVIDA 220
+ A
Sbjct: 63 VLKKAGIDRCRA 74
>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048
{Vibrio cholerae [TaxId: 666]}
Length = 167
Score = 25.6 bits (55), Expect = 7.1
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 147 VGIIGLGRIGMAVAKRA 163
+ +IGLG I
Sbjct: 4 IAMIGLGDIAQKAYLPV 20
>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii
[TaxId: 5811]}
Length = 154
Score = 25.4 bits (55), Expect = 7.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 145 KTVGIIGLGRIGMAVA 160
K V +IG G IG +
Sbjct: 8 KKVAMIGSGMIGGTMG 23
>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 160
Score = 25.4 bits (55), Expect = 7.4
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 145 KTVGIIGLGRIGMAVA 160
+ ++G+G++GMA A
Sbjct: 21 NKITVVGVGQVGMACA 36
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 25.5 bits (55), Expect = 7.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 147 VGIIGLGRIGMAVAK 161
VGI G GRIG V +
Sbjct: 3 VGINGFGRIGRQVFR 17
>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus
pentosus [TaxId: 1589]}
Length = 146
Score = 25.0 bits (54), Expect = 7.8
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 145 KTVGIIGLGRIGMAVA 160
+ V ++G G +G + A
Sbjct: 6 QKVVLVGDGAVGSSYA 21
>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 172
Score = 25.3 bits (55), Expect = 8.0
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 147 VGIIGLGRIGMAVAKRAEA 165
V I G GRIG +
Sbjct: 3 VAINGFGRIGRNFLRCWHG 21
>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium
thermocellum [TaxId: 1515]}
Length = 142
Score = 25.0 bits (54), Expect = 8.2
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 145 KTVGIIGLGRIGMAVA 160
V IIG G +G + A
Sbjct: 2 SKVAIIGAGFVGASAA 17
>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 169
Score = 25.3 bits (55), Expect = 8.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 147 VGIIGLGRIGMAVAKRA 163
VG+ G GRIG V + A
Sbjct: 4 VGVNGFGRIGRLVTRAA 20
>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 159
Score = 25.0 bits (54), Expect = 8.7
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 141 KFTGKTVGIIGLGRIGMAVA 160
K + + ++G+G +GMA A
Sbjct: 16 KLSRCKITVVGVGDVGMACA 35
>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas
putida [TaxId: 303]}
Length = 195
Score = 25.2 bits (54), Expect = 9.0
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 9/83 (10%)
Query: 144 GKTVGIIGLGRIGMAVAKRAEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCHILVVAC 203
G TV + G G +G+A A A + L +
Sbjct: 26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDL-----NPARLAHAKAQGFEIADLSLDT 80
Query: 204 PLTEETRHIINRE----VIDALG 222
PL E+ ++ +DA+G
Sbjct: 81 PLHEQIAALLGEPEVDCAVDAVG 103
>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC
{Neisseria meningitidis, serogroup B [TaxId: 487]}
Length = 152
Score = 24.9 bits (53), Expect = 9.2
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 147 VGIIGLGRIGMAVAKR-AEAFSCPINYYSRTEKPNLKYKYYPSVVELASNCH 197
V +G G + AVA + I +R + + + V A+
Sbjct: 3 VYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE 54
>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 171
Score = 25.0 bits (54), Expect = 9.2
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 147 VGIIGLGRIGMAVAKRA 163
VGI G GRIG V + A
Sbjct: 4 VGINGFGRIGRNVFRAA 20
>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite
(Plasmodium falciparum) [TaxId: 5833]}
Length = 150
Score = 25.1 bits (54), Expect = 9.3
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 147 VGIIGLGRIGMAVA 160
+ ++G G IG +A
Sbjct: 6 IVLVGSGMIGGVMA 19
>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain
{Archaeon Methanopyrus kandleri [TaxId: 2320]}
Length = 159
Score = 25.1 bits (54), Expect = 9.7
Identities = 19/107 (17%), Positives = 39/107 (36%), Gaps = 12/107 (11%)
Query: 144 GKTVGIIGLGRIGMAVAK-RAEAFSCPINYYSRT--------EKPNLKYKYYPSVVELAS 194
KTV ++G G +G VAK + + +RT + + +V+ +
Sbjct: 24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLA 83
Query: 195 NCHILVVACPLTEETRHIINREVIDALGPKG---VLINIGRGPHVDE 238
++V A H+ + + ++I+I V+E
Sbjct: 84 RSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPRDVEE 130
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.401
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,153,958
Number of extensions: 53654
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 95
Length of query: 313
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,240,546
Effective search space: 282844488
Effective search space used: 282844488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.6 bits)