Query 021392
Match_columns 313
No_of_seqs 264 out of 1390
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 03:29:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021392.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021392hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b12_A Signal peptidase I; ser 99.9 7.6E-24 2.6E-28 194.5 10.4 79 198-283 1-93 (248)
2 1umu_A UMUD'; induced mutagene 98.6 1.2E-07 4.2E-12 76.6 7.1 51 204-268 28-79 (116)
3 1kca_A Repressor protein CI; g 98.5 3E-07 1E-11 74.1 8.2 52 205-269 15-72 (109)
4 1jhf_A LEXA repressor; LEXA SO 98.4 6.7E-07 2.3E-11 78.2 8.4 57 204-275 111-168 (202)
5 2hnf_A Repressor protein CI101 98.3 1.3E-06 4.6E-11 72.3 8.1 52 205-269 46-103 (133)
6 3k2z_A LEXA repressor; winged 98.0 2.4E-05 8.3E-10 68.4 8.7 51 204-268 110-161 (196)
7 3bdn_A Lambda repressor; repre 97.9 1.3E-05 4.6E-10 70.9 6.4 55 205-272 142-202 (236)
8 2fjr_A Repressor protein CI; g 90.3 0.41 1.4E-05 40.3 5.6 43 218-275 120-162 (189)
9 1w4s_A Polybromo, polybromo 1 37.3 25 0.00086 29.7 3.5 61 213-284 5-65 (174)
10 3i4o_A Translation initiation 37.1 13 0.00044 28.3 1.4 12 234-245 53-64 (79)
11 2kr7_A FKBP-type peptidyl-prol 36.4 1.1E+02 0.0038 25.1 7.3 63 206-277 65-127 (151)
12 2dgy_A MGC11102 protein; EIF-1 32.6 29 0.00098 28.0 2.9 10 235-244 54-63 (111)
13 1jt8_A EIF-1A, probable transl 28.0 19 0.00067 28.5 1.1 25 217-243 59-83 (102)
14 4dt4_A FKBP-type 16 kDa peptid 24.2 2.2E+02 0.0074 24.1 7.2 35 234-277 112-146 (169)
15 1d7q_A Translation initiation 23.7 48 0.0016 27.9 2.8 27 217-246 70-96 (143)
16 3fm8_A Kinesin-like protein KI 21.2 1.9E+02 0.0066 23.1 6.0 40 268-311 78-120 (124)
No 1
>1b12_A Signal peptidase I; serine proteinase, serine-dependant hydrolase, signal peptid processing, protein translocation; HET: 1PN; 1.95A {Escherichia coli} SCOP: b.87.1.2 PDB: 3s04_A* 1t7d_A* 3iiq_A* 1kn9_A*
Probab=99.90 E-value=7.6e-24 Score=194.48 Aligned_cols=79 Identities=42% Similarity=0.578 Sum_probs=72.1
Q ss_pred HHHheeeeEEECCCCCccCCCCCCEEEEEeeeccC------------CCCCcCcEEEEecCCcccccCCCCCceeEEEEE
Q 021392 198 FKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFF------------KRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIV 265 (313)
Q Consensus 198 lr~fv~~~~~I~g~SMePTL~~GD~VlV~K~~y~~------------~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVI 265 (313)
++.|+++++.|+|+||+|||++||+|+++|..|++ ++++|||||+|+.|.. ++..+||||+
T Consensus 1 ir~fv~~~~~v~g~SM~Ptl~~GD~vlv~k~~yg~r~P~~~~~l~~~~~~~rGDIvvf~~p~~-------~~~~~iKRVi 73 (248)
T 1b12_A 1 VRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPED-------PKLDYIKRAV 73 (248)
T ss_dssp -CBCCEEEEECCSCTTTTTSCTTEEEEEEESEEEEECGGGSCEEEEECCCCTTCEEEEECTTC-------TTSEEEEEEE
T ss_pred CeEEEEEEEEeccccccccccCCCEEEEEecccCcccccccccccccCCCCCCcEEEEEeCCC-------CCceEEEEEE
Confidence 46799999999999999999999999999998753 6899999999998852 5678999999
Q ss_pred EeCCCEEEEECC--EEEECC
Q 021392 266 ATAGDCVEVHGG--KLLVNG 283 (313)
Q Consensus 266 GlPGDtV~I~dg--~vyVNG 283 (313)
|+|||+|+++++ .|||||
T Consensus 74 glpGD~v~i~~~~~~l~ING 93 (248)
T 1b12_A 74 GLPGDKVTYDPVSKELTIQP 93 (248)
T ss_dssp ECTTCEEEEETTTTEEEEET
T ss_pred eeCCCEEEEEcCceEEEECC
Confidence 999999999999 999999
No 2
>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta- lactamase cleavage reaction, LEXA repressor, lambda CI; 2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A 1ay9_A
Probab=98.56 E-value=1.2e-07 Score=76.60 Aligned_cols=51 Identities=20% Similarity=0.251 Sum_probs=44.5
Q ss_pred eeEEECCCCCcc-CCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeC
Q 021392 204 EPRSIPSASMNP-TLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATA 268 (313)
Q Consensus 204 ~~~~I~g~SMeP-TL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlP 268 (313)
..++|.|+||+| ||++||.|++++. .+++.||+|++.. +++.+|||++..+
T Consensus 28 ~~~~v~GdSM~p~~i~~Gd~v~vd~~----~~~~~gdivv~~~----------~~~~~vKr~~~~~ 79 (116)
T 1umu_A 28 YFVKASGDSMIDGGISDGDLLIVDSA----ITASHGDIVIAAV----------DGEFTVKKLQLRP 79 (116)
T ss_dssp EEEECCSSTTGGGTCCTTCEEEEETT----SCCCTTCEEEEEE----------TTEEEEEEEECSS
T ss_pred EEEEECCCCcCCCCCCCCCEEEEEcC----CCCCCCCEEEEEE----------CCEEEEEEEEeCC
Confidence 458999999999 8999999999986 4689999999987 3478999999865
No 3
>1kca_A Repressor protein CI; gene regulation, DNA-binding, lambda repressor, protein oligomerization, DNA-looping; 2.91A {Enterobacteria phage lambda} SCOP: b.87.1.1
Probab=98.51 E-value=3e-07 Score=74.14 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=44.6
Q ss_pred eEEECCCCCc------cCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCC
Q 021392 205 PRSIPSASMN------PTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAG 269 (313)
Q Consensus 205 ~~~I~g~SMe------PTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPG 269 (313)
.++|.|+||+ |+|++||+|++++. .+++.||+|++..+ .++.+|||++..+|
T Consensus 15 ~~~V~GdSM~~~~g~~p~i~~Gd~v~Vd~~----~~~~~Gdivv~~~~---------~~~~~vKrl~~~~~ 72 (109)
T 1kca_A 15 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG---------GDEFTFKKLIRDSG 72 (109)
T ss_dssp EEECCSSTTCCCTTCSSCCCTTCEEEEETT----SCCCTTCEEEEECS---------TTCEEEEEEEEETT
T ss_pred EEEEeCcCcCCCCCCCCeeCCCCEEEEecC----CcCCCCCEEEEEEC---------CCeEEEEEEEEeCC
Confidence 5789999999 99999999999986 46999999999873 24789999998644
No 4
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=98.40 E-value=6.7e-07 Score=78.16 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=49.1
Q ss_pred eeEEECCCCCccC-CCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCCEEEEE
Q 021392 204 EPRSIPSASMNPT-LDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVH 275 (313)
Q Consensus 204 ~~~~I~g~SMePT-L~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGDtV~I~ 275 (313)
..++|.|+||+|+ |.+||.|++++. .+++.||+|++.. +++.+|||+. .+|+.+.+.
T Consensus 111 ~~~~v~GdSM~p~~i~~Gd~v~vd~~----~~~~~G~i~v~~~----------~~~~~vKrl~-~~~~~~~l~ 168 (202)
T 1jhf_A 111 FLLRVSGMSMKDIGIMDGDLLAVHKT----QDVRNGQVVVARI----------DDEVTVKRLK-KQGNKVELL 168 (202)
T ss_dssp EEEECCSSTTGGGTCCTTCEEEEEEC----SCCCTTSEEEEEE----------TTEEEEEEEE-EETTEEEEE
T ss_pred EEEEECCCCCCCCCCCCCCEEEEecc----CCcCCCeEEEEEE----------CCEEEEEEEE-EeCCEEEEE
Confidence 3588999999999 999999999876 4689999999986 3578999999 688877775
No 5
>2hnf_A Repressor protein CI101-229DM-K192A; viral protein; 1.80A {Escherichia coli} PDB: 2ho0_A 1f39_A
Probab=98.33 E-value=1.3e-06 Score=72.28 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=44.3
Q ss_pred eEEECCCCCc------cCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCC
Q 021392 205 PRSIPSASMN------PTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAG 269 (313)
Q Consensus 205 ~~~I~g~SMe------PTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPG 269 (313)
.++|.|+||+ |+|++||+|++++. .+++.||+|+++.. .++.+|||++-.+|
T Consensus 46 ~~~V~GdSM~~~~g~~p~i~~Gd~v~vd~~----~~~~~Gdivv~~~~---------~~~~~vKrl~~~~~ 103 (133)
T 2hnf_A 46 WLEVEGNSMTTPTGSKTSFPDGMLILVDPE----QAVEPGDFCIARLG---------GDEFTFAKLIRDSG 103 (133)
T ss_dssp EEECCSSTTCCC---CCCCCTTCEEEEETT----SCCCTTSEEEEEET---------TTEEEEEEEEEETT
T ss_pred EEEEeCCCcCCCcCCCCccCCCCEEEEccC----CCCCCCCEEEEEEC---------CCEEEEEEEEEeCC
Confidence 5789999999 99999999999985 47899999999863 24789999996543
No 6
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=97.96 E-value=2.4e-05 Score=68.39 Aligned_cols=51 Identities=20% Similarity=0.253 Sum_probs=43.5
Q ss_pred eeEEECCCCC-ccCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeC
Q 021392 204 EPRSIPSASM-NPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATA 268 (313)
Q Consensus 204 ~~~~I~g~SM-ePTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlP 268 (313)
..++|.|+|| +|++.+||+|++++. ..++.||+|++.. +++.+|||+.-.+
T Consensus 110 f~l~v~GdSM~~p~i~~GD~viv~~~----~~~~~G~ivv~~~----------~~~~~vKr~~~~~ 161 (196)
T 3k2z_A 110 FLLKVKGESMIEEHICDGDLVLVRRQ----DWAQNGDIVAAMV----------DGEVTLAKFYQRG 161 (196)
T ss_dssp EEEECCSSTTGGGTCCTTCEEEEEEC----SCCCTTCEEEEEE----------TTEEEEEEEEEET
T ss_pred EEEEEeCCCcCCCCCCCCCEEEEecc----CcCCCCCEEEEEE----------CCcEEEEEEEEEC
Confidence 4589999999 699999999999986 4789999999986 3579999997543
No 7
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=97.92 E-value=1.3e-05 Score=70.87 Aligned_cols=55 Identities=22% Similarity=0.313 Sum_probs=45.9
Q ss_pred eEEECCCCCc------cCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCCEE
Q 021392 205 PRSIPSASMN------PTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCV 272 (313)
Q Consensus 205 ~~~I~g~SMe------PTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGDtV 272 (313)
.++|.|+||+ |+|.+||+|+|++. .+++.||+|++... .++.+|||+.-.+|..+
T Consensus 142 ~l~V~GdSM~~~~g~~P~i~~Gd~v~vd~~----~~~~~g~ivv~~~~---------~~~~~vKrl~~~~~~~~ 202 (236)
T 3bdn_A 142 WLEVEGNSMTAPTGSKPSFPDGMLILVDPE----QAVEPGDFCIARLG---------GDEFTFKKLIRGSGQVF 202 (236)
T ss_dssp EEECCSSSSCCCSSCSSCCCSSCEEEECCS----SCCCTTSEEEEEST---------TTCCCCEEEECCSSSCE
T ss_pred EEEEeCCCcCCCCCCCCcCCCCCEEEECCC----CCCCCCcEEEEEEC---------CCeEEEEEEEEcCCcEE
Confidence 4789999999 99999999999875 37899999999862 35789999997665544
No 8
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=90.28 E-value=0.41 Score=40.31 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=35.6
Q ss_pred CCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCCEEEEE
Q 021392 218 DVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVH 275 (313)
Q Consensus 218 ~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGDtV~I~ 275 (313)
.+||.|+|++. .+..|+++++.. +++.+|||+.-.+|+.+.+.
T Consensus 120 ~~Gd~v~Vd~~-----~~~~g~i~vv~~----------~g~~~vKrl~~~~~~~i~L~ 162 (189)
T 2fjr_A 120 SEGKIYFVDKQ-----ASLSDGLWLVDI----------KGAISIRELTKLPGRKLHVA 162 (189)
T ss_dssp ETTEEEEEETT-----CCSCSEEEEEEE----------TTEEEEEEEEEETTTEEEEE
T ss_pred eCCcEEEEEcC-----CccCCCEEEEEe----------CCeEEEEEEEECCCCEEEEE
Confidence 89999999874 266799999986 45799999998888877665
No 9
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=37.35 E-value=25 Score=29.72 Aligned_cols=61 Identities=18% Similarity=0.105 Sum_probs=26.1
Q ss_pred CccCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCCEEEEECCEEEECCE
Q 021392 213 MNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGV 284 (313)
Q Consensus 213 MePTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGDtV~I~dg~vyVNGk 284 (313)
.+|-...+++.......+.-..++.||.|.+..++. +...+|-||..+--| .+|..++++.
T Consensus 5 g~~~~~~~~r~~y~~~~~~g~~~~vGD~V~v~~~~~-------~~~p~I~rI~~i~~~----~~g~~~v~v~ 65 (174)
T 1w4s_A 5 GSAGLSSLHRTYSQDCSFKNSMYHVGDYVYVEPAEA-------NLQPHIVCIERLWED----SAGEKWLYGC 65 (174)
T ss_dssp ---------------------CCCTTCEEEECCSST-------TSCCEEEEEEEEEEC----TTCCEEEEEE
T ss_pred CCccccCCCcEEeEEEEECCEEEECCCEEEEeCCCC-------CCCCEEEEEEEEEEc----CCCCEEEEEE
Confidence 356666777776666656656889999999987641 345788888865211 2445555554
No 10
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=37.05 E-value=13 Score=28.31 Aligned_cols=12 Identities=25% Similarity=0.163 Sum_probs=6.9
Q ss_pred CCCcCcEEEEec
Q 021392 234 RPEVSDIVIFRA 245 (313)
Q Consensus 234 ~p~rGDIVVF~~ 245 (313)
.+..||.|.+..
T Consensus 53 ~Il~GD~V~ve~ 64 (79)
T 3i4o_A 53 RILPEDRVVVEL 64 (79)
T ss_dssp CCCTTCEEEEEE
T ss_pred cCCCCCEEEEEE
Confidence 355566666654
No 11
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=36.42 E-value=1.1e+02 Score=25.08 Aligned_cols=63 Identities=10% Similarity=-0.108 Sum_probs=38.8
Q ss_pred EEECCCCCccCCCCCCEEEEEeeeccCCCCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCCEEEEECC
Q 021392 206 RSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGG 277 (313)
Q Consensus 206 ~~I~g~SMePTL~~GD~VlV~K~~y~~~~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGDtV~I~dg 277 (313)
+.|+..--+..-.++-+..+.+..+....++.|+.+.+..+. +..+.-+|+.+.+|+|.++-|
T Consensus 65 v~ipp~~aYG~~~~~~v~~v~~~~f~~~~~~~G~~~~~~~~~---------G~~~~~~V~~v~~~~v~vD~N 127 (151)
T 2kr7_A 65 VVIAPEEAYGVYESSYLQEVPRDQFEGIELEKGMSVFGQTED---------NQTIQAIIKDFSATHVMVDYN 127 (151)
T ss_dssp EEECGGGTTCSSCSCEEEEEEGGGGTTSCCCTTCEEEEEETT---------TEEEEEEEEEECSSEEEEEEC
T ss_pred EEEecHHHcCCCCcceEEEEcHHHcCCCCCccCCEEEEECCC---------CCEEEEEEEEECCCEEEEECC
Confidence 344433333333344444444443322368899999998763 456778899999999998743
No 12
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.56 E-value=29 Score=27.95 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=4.9
Q ss_pred CCcCcEEEEe
Q 021392 235 PEVSDIVIFR 244 (313)
Q Consensus 235 p~rGDIVVF~ 244 (313)
+.+||+|+..
T Consensus 54 I~~GD~VlVe 63 (111)
T 2dgy_A 54 IKRGDFLIVD 63 (111)
T ss_dssp CCSSCEEEEE
T ss_pred EcCCCEEEEE
Confidence 3445555554
No 13
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=27.95 E-value=19 Score=28.55 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=13.6
Q ss_pred CCCCCEEEEEeeeccCCCCCcCcEEEE
Q 021392 217 LDVGDRILAEKVSYFFKRPEVSDIVIF 243 (313)
Q Consensus 217 L~~GD~VlV~K~~y~~~~p~rGDIVVF 243 (313)
+.+||+|+|....|. ...+|||+--
T Consensus 59 I~~GD~VlVe~~~yd--~~~Kg~Iv~r 83 (102)
T 1jt8_A 59 VREGDVVIVKPWEVQ--GDQKCDIIWR 83 (102)
T ss_dssp CCSCEEEEECCBCCT--TSEEEEEEEE
T ss_pred ecCCCEEEEEeccCC--CCceEEEEEE
Confidence 445666666665542 2455665433
No 14
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=24.19 E-value=2.2e+02 Score=24.08 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=27.0
Q ss_pred CCCcCcEEEEecCCcccccCCCCCceeEEEEEEeCCCEEEEECC
Q 021392 234 RPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGG 277 (313)
Q Consensus 234 ~p~rGDIVVF~~P~~~~~~g~~~~~~~VKRVIGlPGDtV~I~dg 277 (313)
+++.|+++.+..+ .+..+.-+|+.+.+|+|.++-|
T Consensus 112 ~~~~G~~~~~~~~---------~G~~~~~~V~~v~~~~V~vD~N 146 (169)
T 4dt4_A 112 EPEIGAIMLFTAM---------DGSEMPGVIREINGDSITVDFN 146 (169)
T ss_dssp CCCTTCEEEEECT---------TSCEEEEEEEEEETTEEEEECS
T ss_pred CCCCCcEEEEECC---------CCCEEEEEEEEEcCCEEEEeCC
Confidence 5788999988875 3556777888888888888743
No 15
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=23.74 E-value=48 Score=27.90 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=15.9
Q ss_pred CCCCCEEEEEeeeccCCCCCcCcEEEEecC
Q 021392 217 LDVGDRILAEKVSYFFKRPEVSDIVIFRAP 246 (313)
Q Consensus 217 L~~GD~VlV~K~~y~~~~p~rGDIVVF~~P 246 (313)
+.+||+|+|....| +..+||||--..+
T Consensus 70 I~~GD~VlVe~~~y---d~~KG~Ii~r~~~ 96 (143)
T 1d7q_A 70 INTSDIILVGLRDY---QDNKADVILKYNA 96 (143)
T ss_dssp CCTTCEEEEECSSS---SSSCCEEEEEECT
T ss_pred ecCCCEEEEeeccC---CCCeEEEEEEeCH
Confidence 44677777776654 3466766654433
No 16
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=21.15 E-value=1.9e+02 Score=23.08 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=24.2
Q ss_pred CCCEEEEE---CCEEEECCEEcCcccccccccCCCCCEEecCCeEEE
Q 021392 268 AGDCVEVH---GGKLLVNGVAQDEDFILEPLAYEMDPVVMFPILVLF 311 (313)
Q Consensus 268 PGDtV~I~---dg~vyVNGk~l~E~yi~~~~~~~~~~~tVPeGeyFV 311 (313)
+++.+.+. .+.+||||+.+.++.... .-+.+++...++|.
T Consensus 78 ~~g~~~l~dl~~ngt~VNG~~V~~~~~L~----~GD~I~lG~~~~Fr 120 (124)
T 3fm8_A 78 SEGQVMLTPQKNTRTFVNGSSVSSPIQLH----HGDRILWGNNHFFR 120 (124)
T ss_dssp TTSCEEEEECTTCCEEETTEECCSCEEEC----TTCEEEETTTEEEE
T ss_pred CCCeEEEEECCCCCEEECCEEcCCcEECC----CCCEEEECCCeEEE
Confidence 34445554 357999999998654222 22345677667664
Done!