Query 021394
Match_columns 313
No_of_seqs 150 out of 538
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 02:36:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021394.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021394hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02577 DNase-RNase: Bifuncti 100.0 7.9E-36 1.7E-40 252.8 13.7 126 130-259 5-130 (135)
2 COG1259 Uncharacterized conser 100.0 1.8E-34 3.8E-39 251.3 15.5 127 130-259 10-136 (151)
3 PF14305 ATPgrasp_TupA: TupA-l 61.3 16 0.00035 34.1 5.1 49 171-219 171-221 (239)
4 PF12386 Peptidase_C71: Pseudo 57.8 34 0.00075 30.2 6.1 45 175-219 55-100 (142)
5 PF13670 PepSY_2: Peptidase pr 53.6 68 0.0015 24.8 6.7 47 179-229 29-75 (83)
6 TIGR00638 Mop molybdenum-pteri 33.3 1.1E+02 0.0023 22.2 4.7 49 197-247 10-58 (69)
7 TIGR02726 phenyl_P_delta pheny 27.4 1.7E+02 0.0036 26.0 5.7 59 196-257 7-74 (169)
8 PF14334 DUF4390: Domain of un 26.4 2.6E+02 0.0057 24.4 6.8 45 192-249 5-49 (165)
9 PF10130 PIN_2: PIN domain; I 25.8 52 0.0011 28.4 2.2 33 226-258 90-122 (133)
10 COG3212 Predicted membrane pro 22.4 4.3E+02 0.0094 23.3 7.3 55 177-233 81-137 (144)
11 PRK02315 adaptor protein; Prov 21.7 1.6E+02 0.0035 27.6 4.8 55 200-261 167-221 (233)
12 smart00306 HintN Hint (Hedgeho 21.0 1.3E+02 0.0028 22.7 3.4 22 107-128 52-73 (100)
No 1
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=100.00 E-value=7.9e-36 Score=252.80 Aligned_cols=126 Identities=29% Similarity=0.465 Sum_probs=105.5
Q ss_pred CccCCCCCCCcEEEEEeeCCCceEEEEEEcchhHHHHHHHHcccCCCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEE
Q 021394 130 GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF 209 (313)
Q Consensus 130 ~gaLd~~a~~PvIVLk~edg~~r~LPI~IgeaEAiaI~~aL~g~~~~RPlTHDLl~eiLe~LG~~V~~V~It~~~dGtFy 209 (313)
+..++...++|+++|++++++ +.|||||+..||.+|+.++.|.+++||+|||||.++++++|.++++|+|+++++|+||
T Consensus 5 gi~~~~~~~~~vvlL~~~~~~-~~lpI~i~~~ea~~i~~~~~~~~~~RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~ 83 (135)
T PF02577_consen 5 GISVDEPSGQPVVLLREEDGD-RVLPIWIGAFEAQAIALALEGEKPPRPLTHDLLSDLLEALGAEVERVVIDDLEDGVFY 83 (135)
T ss_dssp EEEEETTTTEEEEEEEETTSS-EEEEEE--HHHHHHHHHHHCT---SS--HHHHHHHHHHHTTEEEEEEEEEEEETTEEE
T ss_pred EEEEcCCCCceEEEEEEcCCC-EEEEEEECHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEE
Confidence 345566667899999999976 7999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCceeeEEEEeCChHHHHHHHHHcCCCEEEehhHHhccCcccc
Q 021394 210 AQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVI 259 (313)
Q Consensus 210 ArL~L~k~g~e~e~v~IDARPSDAIALALR~kaPIyV~eeVl~~agI~v~ 259 (313)
|+|++++++ +++++|+||||||+||+|+|+||||+++|++++++...
T Consensus 84 A~L~l~~~~---~~~~id~RpSDAiaLAl~~~~PI~v~~~vl~~~~~~~~ 130 (135)
T PF02577_consen 84 ARLVLRQGG---EEIEIDARPSDAIALALRFGAPIYVSEEVLDEAGVPVE 130 (135)
T ss_dssp EEEEEEETT---TEEEEEE-HHHHHHHHHHHT--EEEEHHHHHHH-EE--
T ss_pred EEEEEecCC---EEEEEECcHhHHHHHHHHhCCCEEEeHHHHhhcCCCCc
Confidence 999999776 47899999999999999999999999999999999876
No 2
>COG1259 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.8e-34 Score=251.34 Aligned_cols=127 Identities=27% Similarity=0.445 Sum_probs=118.0
Q ss_pred CccCCCCCCCcEEEEEeeCCCceEEEEEEcchhHHHHHHHHcccCCCCCchHHHHHHHHHHhCCEEeEEEEEeEECCEEE
Q 021394 130 GGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMRNVQIARPTLYQVVKEMIEKMGYEVRLVRVTKRVHEAYF 209 (313)
Q Consensus 130 ~gaLd~~a~~PvIVLk~edg~~r~LPI~IgeaEAiaI~~aL~g~~~~RPlTHDLl~eiLe~LG~~V~~V~It~~~dGtFy 209 (313)
+-++.+..+.|++++...+++++.|||||+.+||.+|+.++++.+++||+||||+.++++.+|.+|++|+|++++++|||
T Consensus 10 ~i~~~~~~~~~~~v~~~~~~~~~~lPI~Ig~~ea~si~~~l~~~~p~RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyy 89 (151)
T COG1259 10 GIFFVPVSSFPTVVLLLEGGDNRVLPIYIGASEALAIAKALEGVEPPRPLTHDLLVEIFEELGARVEKVVIDDLIDNTYY 89 (151)
T ss_pred EEEEecccCCceEEEEEEcCCCeEEEEEEeHHHHHHHHHhhccCCCCCCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEE
Confidence 45667777888777777777778999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCceeeEEEEeCChHHHHHHHHHcCCCEEEehhHHhccCcccc
Q 021394 210 AQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVI 259 (313)
Q Consensus 210 ArL~L~k~g~e~e~v~IDARPSDAIALALR~kaPIyV~eeVl~~agI~v~ 259 (313)
|+|+++++++ .+.+||||||||+||+|.|+||||.|+|+++++++..
T Consensus 90 A~L~~~~~~~---~~~iDaRPSDaI~LAlr~~~PI~V~e~v~~~a~~~~~ 136 (151)
T COG1259 90 ATLILEQDDG---KIQIDARPSDAIALALRVGAPIYVAEEVLDEAEIEIE 136 (151)
T ss_pred EEEEEEcCCc---eEEEecccchHHHHHHHhCCCEEEehhhhhhhcCcCc
Confidence 9999999885 5899999999999999999999999999999988875
No 3
>PF14305 ATPgrasp_TupA: TupA-like ATPgrasp
Probab=61.33 E-value=16 Score=34.12 Aligned_cols=49 Identities=24% Similarity=0.341 Sum_probs=40.4
Q ss_pred cccCCCCCchHHHHHHHHHHhCCEEeEEEE--EeEECCEEEEEEEEEecCc
Q 021394 171 RNVQIARPTLYQVVKEMIEKMGYEVRLVRV--TKRVHEAYFAQLYLTKVGN 219 (313)
Q Consensus 171 ~g~~~~RPlTHDLl~eiLe~LG~~V~~V~I--t~~~dGtFyArL~L~k~g~ 219 (313)
.....+||-..+=|.++.+.|.-...-|+| +...+++||.+|.+..+++
T Consensus 171 ~~~~~~kP~~l~emi~iA~~Ls~~f~fvRVDlY~~~~~iyFGElTf~p~~G 221 (239)
T PF14305_consen 171 PDEDIPKPKNLEEMIEIAEKLSKGFPFVRVDLYNVDGKIYFGELTFTPGAG 221 (239)
T ss_pred CCCCCCCChhHHHHHHHHHHHccCCCEEEEEEEEeCCcEEEEeeecCCCCc
Confidence 356789999999999999999765555555 7788999999999987664
No 4
>PF12386 Peptidase_C71: Pseudomurein endo-isopeptidase Pei; InterPro: IPR022119 This peptidase has the catalytic triad C-H-D at the C-terminal end, a triad similar to that in thiol proteases and animal transglutaminases. It catalyses the in vitro lysis of M. marburgensis cells under reducing conditions and exhibits characteristics of metal-activated peptidases.
Probab=57.82 E-value=34 Score=30.23 Aligned_cols=45 Identities=22% Similarity=0.359 Sum_probs=35.5
Q ss_pred CCCCchHHHHHHHHHHhCCEEeEEEEEeE-ECCEEEEEEEEEecCc
Q 021394 175 IARPTLYQVVKEMIEKMGYEVRLVRVTKR-VHEAYFAQLYLTKVGN 219 (313)
Q Consensus 175 ~~RPlTHDLl~eiLe~LG~~V~~V~It~~-~dGtFyArL~L~k~g~ 219 (313)
...-..-+|+..+++.||+.|.-+-+--. .+|+.|..+.|+-.+.
T Consensus 55 iNCtD~~Qlf~~v~~~lGY~Vq~~HVk~rc~~g~wygH~~LRv~~~ 100 (142)
T PF12386_consen 55 INCTDACQLFYRVIESLGYDVQFEHVKCRCNSGKWYGHYRLRVKHK 100 (142)
T ss_pred CCchhHHHHHHHHHHhcCceEEEEEEEEEecCCceeeEEEEEecce
Confidence 34556679999999999998766665433 6999999999987764
No 5
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=53.59 E-value=68 Score=24.78 Aligned_cols=47 Identities=23% Similarity=0.215 Sum_probs=34.2
Q ss_pred chHHHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEecCceeeEEEEeCC
Q 021394 179 TLYQVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLR 229 (313)
Q Consensus 179 lTHDLl~eiLe~LG~~V~~V~It~~~dGtFyArL~L~k~g~e~e~v~IDAR 229 (313)
++.+-+...+++.|++|.+|++++ +|.|-.+..- ++|.. -.+.+|.+
T Consensus 29 ~~~~~~~~~l~~~G~~v~~ve~~~--~g~yev~~~~-~dG~~-~ev~vD~~ 75 (83)
T PF13670_consen 29 LSIEQAVAKLEAQGYQVREVEFDD--DGCYEVEARD-KDGKK-VEVYVDPA 75 (83)
T ss_pred CCHHHHHHHHHhcCCceEEEEEcC--CCEEEEEEEE-CCCCE-EEEEEcCC
Confidence 568888999999999999999864 7779888444 44422 44666654
No 6
>TIGR00638 Mop molybdenum-pterin binding domain. This model describes a multigene family of molybdenum-pterin binding proteins of about 70 amino acids in Clostridium pasteurianum, as a tandemly-repeated domain C-terminal to an unrelated domain in ModE, a molybdate transport gene repressor of E. coli, and in single or tandemly paired domains in several related proteins.
Probab=33.30 E-value=1.1e+02 Score=22.15 Aligned_cols=49 Identities=8% Similarity=-0.027 Sum_probs=37.4
Q ss_pred EEEEEeEECCEEEEEEEEEecCceeeEEEEeCChHHHHHHHHHcCCCEEEe
Q 021394 197 LVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVN 247 (313)
Q Consensus 197 ~V~It~~~dGtFyArL~L~k~g~e~e~v~IDARPSDAIALALR~kaPIyV~ 247 (313)
..+|.++..+...+++.+.-++. ..+.-..-+..+-.|+++-|.|+|+.
T Consensus 10 ~g~I~~i~~~g~~~~v~l~~~~~--~~l~a~i~~~~~~~l~l~~G~~v~~~ 58 (69)
T TIGR00638 10 KGKVVAIEDGDVNAEVDLLLGGG--TKLTAVITLESVAELGLKPGKEVYAV 58 (69)
T ss_pred EEEEEEEEECCCeEEEEEEECCC--CEEEEEecHHHHhhCCCCCCCEEEEE
Confidence 45667776777788999887653 24666777888999999999999875
No 7
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=27.37 E-value=1.7e+02 Score=26.02 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=44.1
Q ss_pred eEEEEEeEECCEE-EEEEEEEecCceeeEEEEeCChHHHHHHHHHcCCCEEEe--------hhHHhccCcc
Q 021394 196 RLVRVTKRVHEAY-FAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVN--------KYLAYSDGMR 257 (313)
Q Consensus 196 ~~V~It~~~dGtF-yArL~L~k~g~e~e~v~IDARPSDAIALALR~kaPIyV~--------eeVl~~agI~ 257 (313)
.+..|.+ .|||+ -.++++...|+ |..+++.|=+.||.+..+.++|+.|- +..+++.|+.
T Consensus 7 i~~~v~d-~dGv~tdg~~~~~~~g~--~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~ 74 (169)
T TIGR02726 7 IKLVILD-VDGVMTDGRIVINDEGI--ESRNFDIKDGMGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIK 74 (169)
T ss_pred CeEEEEe-CceeeECCeEEEcCCCc--EEEEEecchHHHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCc
Confidence 3445555 56776 57888887775 57899999999999999999999883 2255556664
No 8
>PF14334 DUF4390: Domain of unknown function (DUF4390)
Probab=26.42 E-value=2.6e+02 Score=24.42 Aligned_cols=45 Identities=13% Similarity=0.219 Sum_probs=34.6
Q ss_pred CCEEeEEEEEeEECCEEEEEEEEEecCceeeEEEEeCChHHHHHHHHHcCCCEEEehh
Q 021394 192 GYEVRLVRVTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKY 249 (313)
Q Consensus 192 G~~V~~V~It~~~dGtFyArL~L~k~g~e~e~v~IDARPSDAIALALR~kaPIyV~ee 249 (313)
+.+|+.+.++ ..+|.|+.+ ..+|...++.+.=|++.|+|++..=+
T Consensus 5 ~~~i~~~~~~-~~~~~l~l~------------a~~~~~l~~~l~~AL~~Gipl~f~~~ 49 (165)
T PF14334_consen 5 SIEIRSAELE-NSDGGLYLS------------ADVDFELSPELEDALKNGIPLYFVFE 49 (165)
T ss_pred ccEEEEEEEE-EeCCEEEEE------------EEEeccCCHHHHHHHHcCCeEEEEEE
Confidence 5678888888 566766632 24678889999999999999998643
No 9
>PF10130 PIN_2: PIN domain; InterPro: IPR019298 This entry represents a set of bacterial and archaeal proteins that are predicted to be RNases (from similarities to 5'-exonucleases).
Probab=25.84 E-value=52 Score=28.41 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=25.5
Q ss_pred EeCChHHHHHHHHHcCCCEEEehhHHhccCccc
Q 021394 226 FDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRV 258 (313)
Q Consensus 226 IDARPSDAIALALR~kaPIyV~eeVl~~agI~v 258 (313)
+|-.=-.-+|||+..++||+-.+.=+-..|+.-
T Consensus 90 ~D~~D~p~vALaL~l~~~IWT~Dkdl~~~Gl~~ 122 (133)
T PF10130_consen 90 RDPDDWPFVALALQLNAPIWTEDKDLFGSGLAT 122 (133)
T ss_pred CCcchHHHHHHHHHcCCCeecCcHHHHhcCcch
Confidence 454445569999999999999998887667653
No 10
>COG3212 Predicted membrane protein [Function unknown]
Probab=22.41 E-value=4.3e+02 Score=23.26 Aligned_cols=55 Identities=9% Similarity=0.081 Sum_probs=40.4
Q ss_pred CCchH-HHHHHHHHHhCCEEeEEEEEeEECCEEEEEEEEEec-CceeeEEEEeCChHHH
Q 021394 177 RPTLY-QVVKEMIEKMGYEVRLVRVTKRVHEAYFAQLYLTKV-GNETECVSFDLRPSDA 233 (313)
Q Consensus 177 RPlTH-DLl~eiLe~LG~~V~~V~It~~~dGtFyArL~L~k~-g~e~e~v~IDARPSDA 233 (313)
.+.+. .++.-.+++.+.+|..+.+.. .+|.++=++.+..+ +. ..++.|||+..+-
T Consensus 81 ~iis~~ea~~iAl~~~~G~v~dieLe~-~~g~~vYevei~~~d~~-e~ev~iDA~TG~I 137 (144)
T COG3212 81 TIISLEEAKEIALKRVPGKVDDIELEE-DNGRLVYEVEIVKDDGQ-EYEVEIDAKTGKI 137 (144)
T ss_pred cccCHHHHHHHHHHHCCCceeEEEEec-cCCEEEEEEEEEeCCCc-EEEEEEecCCCCc
Confidence 44443 345556777777999999986 67999889998876 54 3679999987553
No 11
>PRK02315 adaptor protein; Provisional
Probab=21.74 E-value=1.6e+02 Score=27.60 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=43.6
Q ss_pred EEeEECCEEEEEEEEEecCceeeEEEEeCChHHHHHHHHHcCCCEEEehhHHhccCcccccc
Q 021394 200 VTKRVHEAYFAQLYLTKVGNETECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMRVIES 261 (313)
Q Consensus 200 It~~~dGtFyArL~L~k~g~e~e~v~IDARPSDAIALALR~kaPIyV~eeVl~~agI~v~E~ 261 (313)
.+.+ +|.||-.|.+..+.. -+..+.|.++++..++-|=.++..++.+.|-.+.+.
T Consensus 167 LY~~-~~~YYL~l~~~~~~~------~~~~~~~~~ail~EYg~~s~~t~~~l~EhGk~Im~~ 221 (233)
T PRK02315 167 LYKY-EGRYYLTVLFDDENY------PEEEIDDMLAILLEYANESDLTIHRLQEYGKVIMSH 221 (233)
T ss_pred CeEE-CCEEEEEEEecCccC------CHHHHHHHHHHHHHhCCCCcccHHHHHHhchhhhhc
Confidence 3444 999998888764321 245689999999999999999999999999887644
No 12
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=21.05 E-value=1.3e+02 Score=22.75 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=16.9
Q ss_pred cCceeEEEeccCceeEEeecCC
Q 021394 107 GADGFMIKMRDGRHLRCVHNNP 128 (313)
Q Consensus 107 ~~~~~~~~m~~g~~l~~~~~~~ 128 (313)
..+-+.|+.++|+.++|..+||
T Consensus 52 ~~~~~~i~~~~g~~i~~T~~H~ 73 (100)
T smart00306 52 EKKFYRIKTENGREITLTPDHL 73 (100)
T ss_pred ceeEEEEEECCCCEEEECCCCE
Confidence 4455568889999999987755
Done!