Query 021395
Match_columns 313
No_of_seqs 175 out of 410
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 02:37:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021395.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021395hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10941 hypothetical protein; 100.0 2.8E-43 6.1E-48 330.8 14.7 210 83-306 8-246 (269)
2 COG2912 Uncharacterized conser 100.0 2.1E-32 4.5E-37 255.7 10.8 206 86-305 12-245 (269)
3 PF13369 Transglut_core2: Tran 99.9 3.6E-26 7.8E-31 197.7 8.3 130 115-248 2-152 (152)
4 PF01841 Transglut_core: Trans 91.5 0.03 6.4E-07 44.6 -1.6 62 135-201 10-71 (113)
5 smart00460 TGc Transglutaminas 75.7 2 4.2E-05 31.0 1.9 26 176-201 1-26 (68)
6 COG1305 Transglutaminase-like 61.1 36 0.00078 31.1 7.5 73 118-201 142-214 (319)
7 PF13371 TPR_9: Tetratricopept 58.6 5.6 0.00012 28.7 1.3 50 250-302 1-56 (73)
8 PF12418 AcylCoA_DH_N: Acyl-Co 32.8 28 0.0006 22.8 1.3 16 36-51 6-21 (34)
9 COG2345 Predicted transcriptio 30.4 3.1E+02 0.0067 25.6 8.3 140 45-199 29-190 (218)
10 PF10787 YfmQ: Uncharacterised 30.3 23 0.00051 30.9 0.9 45 137-183 57-103 (149)
11 PF04405 ScdA_N: Domain of Unk 27.4 46 0.001 24.3 1.9 35 18-62 17-52 (56)
12 COG5502 Uncharacterized conser 27.1 4.2E+02 0.0091 23.0 8.0 96 37-151 6-109 (135)
13 PRK04758 hypothetical protein; 23.1 4.5E+02 0.0098 23.6 7.8 66 40-105 41-108 (181)
No 1
>PRK10941 hypothetical protein; Provisional
Probab=100.00 E-value=2.8e-43 Score=330.84 Aligned_cols=210 Identities=17% Similarity=0.095 Sum_probs=187.7
Q ss_pred cCCCCcHHHHHHHHhhhhCCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCC
Q 021395 83 INKCVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNAR 162 (313)
Q Consensus 83 ~de~~dL~eaAL~IA~e~~P~~s~s~v~l~v~~~~~~LD~La~ev~~~l~~~~~~~p~~~l~aLn~vLf~elGF~Gn~~~ 162 (313)
.+++++|.+||++||++.+| ++|++++..+||+|+.+++. .++...++.+++++||++||++|||+||..
T Consensus 8 ~~~~~~L~e~al~ia~~~~p-------dl~~~~~~~~L~~l~~~~~~--~l~~~~~~~~~l~~L~~~fy~~lgF~Gn~~- 77 (269)
T PRK10941 8 EFNKAPLCEGMILASQAIRR-------DFPSQDVYDELERLVSLARE--EISQLLPQDEQLEKLIALFYGEWGFGGASG- 77 (269)
T ss_pred cccCccHHHHHHHHHHHhCC-------CCCHHHHHHHHHHHHHHHHH--hccccCCHHHHHHHHHHHHHHHhCCCCCcc-
Confidence 47899999999999999999 99999999999999999999 677888999999999999999999999999
Q ss_pred CCcCCCccccHHHHHhcccCchHHHHHHHHHHHHHcCCC--cc--C-----------------C-CCceeeccccccccc
Q 021395 163 NQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW--GL--I-----------------D-FDVEISFPLDLYSLP 220 (313)
Q Consensus 163 ~~Y~dp~NS~L~~VLerR~GiPIsLsiIYleVArRLGlp--GV--~-----------------d-f~G~il~~~d~~~l~ 220 (313)
+||+|+|||||+||++|+|+|||||+||++||+|+|+| || | | |+|+++++++|+.+.
T Consensus 78 -~Y~~p~ns~L~~VL~~R~G~PisL~il~l~iA~~lglp~~gV~fPghfllr~~~~d~~~~~IDPf~G~~L~~~~l~~~L 156 (269)
T PRK10941 78 -VYRLSDALWLDKVLKTRQGSAVSLGAILLWIANRLDLPLMPVIFPTQLILRADWLDGEMWLINPFNGETLDEHTLEVWL 156 (269)
T ss_pred -ccCCchhhHHHHHHHccCCCcHHHHHHHHHHHHHcCCCeeeeecCchheeeeecCCCceEEEeCCCCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999 87 2 1 368888899999888
Q ss_pred cccccCCCCC-CCCCCCCCHHHHHHHHHHHHHHHhccccCCcc------hhhhhchhhHHHHhhhcCCCchhhhhHhHHH
Q 021395 221 RGYQKQKSKD-SDQPHIITVQMLLEEILRNLKNAFWPFQHDRS------RSLFLRAARAANCIDQLNSGDSGLQLASAKA 293 (313)
Q Consensus 221 rg~~~~~~~~-~~~~~~~s~r~IL~RmL~NLk~~y~~~~~~~s------~~l~L~~~~~a~~~dr~~~~~~~~~~~~~~~ 293 (313)
++..++..+. ..++.+++|++||.|||+|||.+|+++++... +.+.|.|.+..+.+||+. .++||+|.+.
T Consensus 157 ~~~~g~~~~l~~~~L~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGl---l~~qL~c~~~ 233 (269)
T PRK10941 157 KGNISPSAELFNEDLDEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGL---IYAQLDCEHV 233 (269)
T ss_pred HhhcCCcccCCHHHcCCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHcCCcHH
Confidence 7776664332 34788999999999999999999999999554 566666777778999999 9999999999
Q ss_pred HHHHHHhcccccC
Q 021395 294 ARHRLERGVWNSV 306 (313)
Q Consensus 294 a~~~ler~~w~~~ 306 (313)
|..|||.+|=-++
T Consensus 234 A~~DL~~fl~~~P 246 (269)
T PRK10941 234 ALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHHhCC
Confidence 9999998874443
No 2
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=2.1e-32 Score=255.69 Aligned_cols=206 Identities=24% Similarity=0.211 Sum_probs=180.4
Q ss_pred CCcHHHHHHHHhhhhCCCCCCCCCCCCHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCCCCc
Q 021395 86 CVDLGKTALHIAAEDDSLISHSSVPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQL 165 (313)
Q Consensus 86 ~~dL~eaAL~IA~e~~P~~s~s~v~l~v~~~~~~LD~La~ev~~~l~~~~~~~p~~~l~aLn~vLf~elGF~Gn~~~~~Y 165 (313)
...+.++++++|+..+| ++|+..+..+++.++..++. .++....+++++++++++||++|||+||.+ .|
T Consensus 12 ~~~~~e~~l~~a~~~~~-------~~dp~~~~~~l~~lV~~a~~--~i~~~~~~~~~~~~l~~~fy~d~gF~~~~~--~y 80 (269)
T COG2912 12 EAPLKEGALLAAQAIRP-------DLDPARLLNELDRLVRLARK--RISELLPQEEQLEALLRLFYGDWGFSGDEE--DY 80 (269)
T ss_pred hccchhHHHHHHHHhCc-------CCCHHHHHHHHHHHHHHHHH--HhhhccChhhHHHHHHHHHHHHcCCCCCcc--cc
Confidence 45567779999999999 99999999999999999988 677778889999999999999999999999 99
Q ss_pred CCCccccHHHHHhcccCchHHHHHHHHHHHHHcCCC--cc--CC-----------------CCceeeccccccccccccc
Q 021395 166 IEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW--GL--ID-----------------FDVEISFPLDLYSLPRGYQ 224 (313)
Q Consensus 166 ~dp~NS~L~~VLerR~GiPIsLsiIYleVArRLGlp--GV--~d-----------------f~G~il~~~d~~~l~rg~~ 224 (313)
++|+|+|+++|+++|+|+||+||+||+++|+++|+| || |+ |+|++++.++|+.+..+..
T Consensus 81 ~~~~n~~l~~Vl~~R~G~pvsLa~vll~ia~~l~lpl~gV~FP~~flLR~~~~~~~~~idP~ng~~l~~~~l~~~l~~~~ 160 (269)
T COG2912 81 FDPRNLYLNQVLQRRQGIPVSLAVVLLEIARRLDLPLYGVNFPTQLLLRAEVEDEPLLIDPFNGGTLSQHELQEWLKGTI 160 (269)
T ss_pred cCchhhhHHHHHHHcCCCcchHHHHHHHHHHHcCCCCCccCCccceeEeeccCCCceeeCCCCCCcccHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999 87 21 3577888899998887776
Q ss_pred cCCCCCC-CCCCCCCHHHHHHHHHHHHHHHhccccCCcc------hhhhhchhhHHHHhhhcCCCchhhhhHhHHHHHHH
Q 021395 225 KQKSKDS-DQPHIITVQMLLEEILRNLKNAFWPFQHDRS------RSLFLRAARAANCIDQLNSGDSGLQLASAKAARHR 297 (313)
Q Consensus 225 ~~~~~~~-~~~~~~s~r~IL~RmL~NLk~~y~~~~~~~s------~~l~L~~~~~a~~~dr~~~~~~~~~~~~~~~a~~~ 297 (313)
++.++.- ..+..+++++|+.||++|||++|.+++++.. +.+-|.|.++....||+. .|+|++|.+.|..|
T Consensus 161 ~~~ael~~~~L~~a~~~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGl---iY~ql~c~~vAl~d 237 (269)
T COG2912 161 GPSAELLPEDLKQASNREILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGL---IYAQLGCYHVALED 237 (269)
T ss_pred CcHhhhhhhhhhhccHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHH---HHHhcCCchhhHHH
Confidence 6654432 3567889999999999999999999999664 566666777888999998 99999999999999
Q ss_pred HHhccccc
Q 021395 298 LERGVWNS 305 (313)
Q Consensus 298 ler~~w~~ 305 (313)
|++.+=..
T Consensus 238 l~~~~~~~ 245 (269)
T COG2912 238 LSYFVEHC 245 (269)
T ss_pred HHHHHHhC
Confidence 99866433
No 3
>PF13369 Transglut_core2: Transglutaminase-like superfamily
Probab=99.93 E-value=3.6e-26 Score=197.73 Aligned_cols=130 Identities=23% Similarity=0.360 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCCCCcCCCccccHHHHHhcccCchHHHHHHHHHH
Q 021395 115 ALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEI 194 (313)
Q Consensus 115 ~~~~~LD~La~ev~~~l~~~~~~~p~~~l~aLn~vLf~elGF~Gn~~~~~Y~dp~NS~L~~VLerR~GiPIsLsiIYleV 194 (313)
++.++||+||.++++ .++...+|.+++++|+++||+++||+|+.. +|++|+|++|++||++|+|+||+||+||++|
T Consensus 2 ~~~~~Ld~la~~v~~--~~~~~~~~~~~l~al~~~l~~~~gF~~~~~--~y~~~~n~~l~~vL~~r~G~Pi~L~ily~~v 77 (152)
T PF13369_consen 2 AVLQRLDALAAQVRQ--RLPARASPREKLEALNDVLYQELGFSGNSE--NYYDPENSFLHKVLERRRGIPISLAILYLEV 77 (152)
T ss_pred hHHHHHHHHHHHHHH--HccccCCHHHHHHHHHHHHHHHcCCCCCcc--ccCChHhhhHHHHHhcCCCCcHHHHHHHHHH
Confidence 678999999999999 577778999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHcCCC--cc--C--------C--------C-CceeeccccccccccccccCCCCCCCCCCCCCHHHHHHHHHH
Q 021395 195 LKMLRIW--GL--I--------D--------F-DVEISFPLDLYSLPRGYQKQKSKDSDQPHIITVQMLLEEILR 248 (313)
Q Consensus 195 ArRLGlp--GV--~--------d--------f-~G~il~~~d~~~l~rg~~~~~~~~~~~~~~~s~r~IL~RmL~ 248 (313)
|+|+|++ || | + | +|++++.++|+.+..+..++......++.++++++||.||+|
T Consensus 78 a~rlGl~~~~v~~Pgh~l~r~~~~~~~~iDpf~~G~~l~~~~l~~~l~~~~~~~~~~~~~l~p~s~~eil~R~l~ 152 (152)
T PF13369_consen 78 ARRLGLPAEPVNFPGHFLVRVRSDGEFYIDPFNGGRLLSREELERLLSRMGGPAELDPEYLKPASPREILLRMLR 152 (152)
T ss_pred HHHcCCeEEEEecCCEEEEEEecCCcEEEccCCCCccCCHHHHHHHHHhccCcccCCHHHhCCCCHHHHHHHHhC
Confidence 9999999 65 2 1 2 377777788877776654441112346789999999999985
No 4
>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i.e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....
Probab=91.47 E-value=0.03 Score=44.55 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHHhhhhcCCCCCCCCCCcCCCccccHHHHHhcccCchHHHHHHHHHHHHHcCCC
Q 021395 135 FRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW 201 (313)
Q Consensus 135 ~~~~p~~~l~aLn~vLf~elGF~Gn~~~~~Y~dp~NS~L~~VLerR~GiPIsLsiIYleVArRLGlp 201 (313)
...++.+++++|..++-....|. + .+..+.......||.++.|.+.-.+.++..++|.+|||
T Consensus 10 ~~~~~~~~~~~i~~~v~~~~~y~-~----~~~~~~~~~~~~~l~~~~G~C~~~a~l~~allr~~Gip 71 (113)
T PF01841_consen 10 NSKTPLEKAKAIYDWVRSNIRYD-D----PNYSPGPRDASEVLRSGRGDCEDYASLFVALLRALGIP 71 (113)
T ss_dssp TSHCHHCCCCCCCCCCCCCCCEC------TCCCCCCTTHHHHHHCEEESHHHHHHHHHHHHHHHT--
T ss_pred CCCCHHHHHHHHHHHHHhCcEEe-C----CCCCCCCCCHHHHHHcCCCccHHHHHHHHHHHhhCCCc
Confidence 45666677777777776666665 1 23344455589999999999999999999999999999
No 5
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=75.68 E-value=2 Score=31.03 Aligned_cols=26 Identities=19% Similarity=0.368 Sum_probs=25.1
Q ss_pred HHhcccCchHHHHHHHHHHHHHcCCC
Q 021395 176 VLTHRTGSAVMLSLIYSEILKMLRIW 201 (313)
Q Consensus 176 VLerR~GiPIsLsiIYleVArRLGlp 201 (313)
||++|.|.+-..+.++..++|.+|||
T Consensus 1 ~~~~~~G~C~~~a~l~~~llr~~GIp 26 (68)
T smart00460 1 LLKTKYGTCGEFAALFVALLRSLGIP 26 (68)
T ss_pred CCcccceeeHHHHHHHHHHHHHCCCC
Confidence 58899999999999999999999999
No 6
>COG1305 Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]
Probab=61.09 E-value=36 Score=31.12 Aligned_cols=73 Identities=14% Similarity=0.172 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCCCCcCCCccccHHHHHhcccCchHHHHHHHHHHHHH
Q 021395 118 SQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKM 197 (313)
Q Consensus 118 ~~LD~La~ev~~~l~~~~~~~p~~~l~aLn~vLf~elGF~Gn~~~~~Y~dp~NS~L~~VLerR~GiPIsLsiIYleVArR 197 (313)
..+..++.++ ......+.+++..+..+++...-|.... .+...--..+|+.++|.|-=.+.+++.++|.
T Consensus 142 ~~~~~la~~~-----~~~~~~~~~~~~~~~~~~~~~~~y~~~~------~~~~~~~~~~l~~~~G~C~d~a~l~val~Ra 210 (319)
T COG1305 142 PRVAELAARE-----TGGATTPREKAAALFDYVNSKIRYSPGP------TPVTGSASDALRLGRGVCRDFAHLLVALLRA 210 (319)
T ss_pred HHHHHHHHHh-----hcccCCHHHHHHHHHHHHhhcceeecCC------CCCCCCHHHHHHhCCcccccHHHHHHHHHHH
Confidence 3455555553 2245677888999999888655554332 2233345679999999999999999999999
Q ss_pred cCCC
Q 021395 198 LRIW 201 (313)
Q Consensus 198 LGlp 201 (313)
+|||
T Consensus 211 ~GIp 214 (319)
T COG1305 211 AGIP 214 (319)
T ss_pred cCCc
Confidence 9999
No 7
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=58.61 E-value=5.6 Score=28.73 Aligned_cols=50 Identities=22% Similarity=0.249 Sum_probs=39.0
Q ss_pred HHHHhccccCCcc------hhhhhchhhHHHHhhhcCCCchhhhhHhHHHHHHHHHhcc
Q 021395 250 LKNAFWPFQHDRS------RSLFLRAARAANCIDQLNSGDSGLQLASAKAARHRLERGV 302 (313)
Q Consensus 250 Lk~~y~~~~~~~s------~~l~L~~~~~a~~~dr~~~~~~~~~~~~~~~a~~~ler~~ 302 (313)
|+.+|++.++.+. +.+.+.|.+......++. .+.+++....|...+++.+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~---~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRAR---CLFQLGRYEEALEDLERAL 56 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHH---HHHHhccHHHHHHHHHHHH
Confidence 5677777777554 456666777777888777 8999999999999999876
No 8
>PF12418 AcylCoA_DH_N: Acyl-CoA dehydrogenase N terminal ; InterPro: IPR020953 This entry represents the N-terminal domain of Acyl-CoA dehydrogenase, which is one of the enzymes involved in AcylCoA interaction in beta-oxidation []. The protein is found in association with PF02770 from PFAM, PF00441 from PFAM, PF02771 from PFAM.
Probab=32.77 E-value=28 Score=22.76 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=13.0
Q ss_pred cchhhHHHHHHhhhhc
Q 021395 36 VASDLKLALHDVLDSI 51 (313)
Q Consensus 36 ~~~~~~~~~~~~~~~~ 51 (313)
-..|++|+||+.|+.-
T Consensus 6 p~rD~~F~L~Evl~~~ 21 (34)
T PF12418_consen 6 PLRDMRFVLYEVLDAD 21 (34)
T ss_pred cHHHHHHHHHHHHCcH
Confidence 4579999999998743
No 9
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=30.41 E-value=3.1e+02 Score=25.56 Aligned_cols=140 Identities=13% Similarity=0.112 Sum_probs=85.9
Q ss_pred HHhhhhcccccHHHHHHHHHHHHHH-----------hhhh----hhhhhcccccCCCCcHHHHHHHHhhhhCCCCCCCCC
Q 021395 45 HDVLDSIGTDTTFAREAREGFYSQI-----------KRLS----NVERETSISINKCVDLGKTALHIAAEDDSLISHSSV 109 (313)
Q Consensus 45 ~~~~~~~~~~~~~~~~ar~~F~~~l-----------~~~~----~~~~~~~~~~de~~dL~eaAL~IA~e~~P~~s~s~v 109 (313)
.|+=+..||++..+++=.+.+..+= .++. .-++.....|++..+|+.+++..-.+..-
T Consensus 29 ~elA~~Lgis~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~~f~~~y~~l~~~~l~~l~~~~G------- 101 (218)
T COG2345 29 DELAEELGISPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGREQFPKRYGELALALLDALEETGG------- 101 (218)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchhhcchhhHHHHHHHHHHHHHhcc-------
Confidence 3455678888888877666554321 1111 11223334577777887777766666554
Q ss_pred CCCHHHHH----HHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCC---CCcCCCccccHHHHHhcccC
Q 021395 110 PLPVDALI----SQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNAR---NQLIEPRSLYLHSVLTHRTG 182 (313)
Q Consensus 110 ~l~v~~~~----~~LD~La~ev~~~l~~~~~~~p~~~l~aLn~vLf~elGF~Gn~~~---~~Y~dp~NS~L~~VLerR~G 182 (313)
.+.+. .+-+++..+.+. .+....+.+++++.|..++ .++||-+.... ..|---++.|-...+.++
T Consensus 102 ---~~~l~~~l~~r~~~~~~~~~~--~~~~~~~~ee~~e~Lv~l~-~~~gy~~e~~~~~~~~~~l~e~nCPi~~vA~~-- 173 (218)
T COG2345 102 ---EEALNAFLEKRAQAIGAQYRP--AMGGDADLEEKVERLVELL-SDLGYMPELRPVDNGRVQLIEHNCPISAVAEE-- 173 (218)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhh--cCCCCCCHHHHHHHHHHHH-HhCCccccccccCCCceEEEecCCchHHHHHH--
Confidence 12322 334445555544 2334688899999999987 56788775321 134344566766677776
Q ss_pred chHHHHHHHHHHHHHcC
Q 021395 183 SAVMLSLIYSEILKMLR 199 (313)
Q Consensus 183 iPIsLsiIYleVArRLG 199 (313)
.|+.+..---.+..-||
T Consensus 174 ~~~~C~~e~~~~~~~Lg 190 (218)
T COG2345 174 FPVACESELALFAEVLG 190 (218)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 88888887777777777
No 10
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=30.29 E-value=23 Score=30.92 Aligned_cols=45 Identities=9% Similarity=0.218 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHhhhh-cCC-CCCCCCCCcCCCccccHHHHHhcccCc
Q 021395 137 SSPESVLESIERYLFDK-KGF-RRTNARNQLIEPRSLYLHSVLTHRTGS 183 (313)
Q Consensus 137 ~~p~~~l~aLn~vLf~e-lGF-~Gn~~~~~Y~dp~NS~L~~VLerR~Gi 183 (313)
.+-.+.++.+|+-+|-+ +.| .|+.+ -|..|+|+.-+-|+++++|-
T Consensus 57 e~K~~~I~~FNeAiFLekyY~~P~~e~--~~l~pe~~gtPlvI~tKkGK 103 (149)
T PF10787_consen 57 EDKSQIIDQFNEAIFLEKYYIPPGNEE--RYLHPENSGTPLVIDTKKGK 103 (149)
T ss_pred hHHHHHHHHHhHHHHHHhhccCCCCcc--cccCcccCCCCEEEEeccCc
Confidence 44457888999866644 444 46766 79999999999999998884
No 11
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=27.44 E-value=46 Score=24.32 Aligned_cols=35 Identities=26% Similarity=0.591 Sum_probs=26.4
Q ss_pred CcCcceeEE-eecCCCCcccchhhHHHHHHhhhhcccccHHHHHHH
Q 021395 18 SKFSRYRVT-CCSGSQQKYVASDLKLALHDVLDSIGTDTTFAREAR 62 (313)
Q Consensus 18 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ar 62 (313)
.-|.+|++= |+||+.+ |.+|....|+|....-+..
T Consensus 17 ~vf~~~gIDfCCgG~~~----------L~eA~~~~~ld~~~vl~~L 52 (56)
T PF04405_consen 17 RVFRKYGIDFCCGGNRS----------LEEACEEKGLDPEEVLEEL 52 (56)
T ss_pred HHHHHcCCcccCCCCch----------HHHHHHHcCCCHHHHHHHH
Confidence 346677775 9999866 8888999999987665543
No 12
>COG5502 Uncharacterized conserved protein [Function unknown]
Probab=27.08 E-value=4.2e+02 Score=23.02 Aligned_cols=96 Identities=11% Similarity=0.073 Sum_probs=50.7
Q ss_pred chhhHHHHHHhhhhcccccHH-HHHHHHHHHHHHhhhhhhhhhcccccCCCCcHH-------HHHHHHhhhhCCCCCCCC
Q 021395 37 ASDLKLALHDVLDSIGTDTTF-AREAREGFYSQIKRLSNVERETSISINKCVDLG-------KTALHIAAEDDSLISHSS 108 (313)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~-~~~ar~~F~~~l~~~~~~~~~~~~~~de~~dL~-------eaAL~IA~e~~P~~s~s~ 108 (313)
.-+.-.|+|++.+.+|+.+.+ |+..-+.-.+-++. ++|.+..+.+ -++++... |
T Consensus 6 ~~~~~~fi~ev~~~a~l~s~~~A~~~~~avL~tlRd---------rL~~eea~~~aaqLP~~ir~~~~~~---p------ 67 (135)
T COG5502 6 SQQFDEFIGEVQAEAGLQSRNDAYRITRAVLRTLRD---------RLPGEEAADFAAQLPMEIRDILVDG---P------ 67 (135)
T ss_pred HHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---------HcChhHHHHHHHhCCHHHHHHHhcC---C------
Confidence 345678999999999965554 44444444444442 2222222222 23333332 3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhh
Q 021395 109 VPLPVDALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLF 151 (313)
Q Consensus 109 v~l~v~~~~~~LD~La~ev~~~l~~~~~~~p~~~l~aLn~vLf 151 (313)
+.........+|+.-.+|..........+++..++++-.+|=
T Consensus 68 -~~~~~~~~~s~~dFl~Rv~~~~g~~~~vd~e~a~~AVf~vL~ 109 (135)
T COG5502 68 -DLGPPKLPFSLDDFLTRVANKFGLEPPVDPEHAIAAVFAVLK 109 (135)
T ss_pred -cCCCCCCcccHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHH
Confidence 111222334455555555554456667778777766666653
No 13
>PRK04758 hypothetical protein; Validated
Probab=23.11 E-value=4.5e+02 Score=23.64 Aligned_cols=66 Identities=9% Similarity=-0.043 Sum_probs=44.1
Q ss_pred hHHHHHHhhhhcccccHHHHHHHHHHHHHHhhh-hhhh-hhcccccCCCCcHHHHHHHHhhhhCCCCC
Q 021395 40 LKLALHDVLDSIGTDTTFAREAREGFYSQIKRL-SNVE-RETSISINKCVDLGKTALHIAAEDDSLIS 105 (313)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~ar~~F~~~l~~~-~~~~-~~~~~~~de~~dL~eaAL~IA~e~~P~~s 105 (313)
-+.|+..+++.-|...+..+.+...+.+..... +..+ ...-++|++..+|.+=|-.++.|...++.
T Consensus 41 ~~~W~~~~~~~~~~~~~~~~~~l~~ly~~t~~~L~d~~~~f~lLLPdD~~~L~~Ra~AL~~W~~gFL~ 108 (181)
T PRK04758 41 GADWLARILADAGQVAPAQGSALDQLRQATVAQLEDRDFAFELLLAEDGAPLAARADALFDWCRAFLG 108 (181)
T ss_pred cHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHhccCCCeeeeeCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 378999988866665555555666665555432 1111 12233699999999999999999887655
Done!