Query 021395
Match_columns 313
No_of_seqs 175 out of 410
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 03:32:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021395.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021395hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3isr_A Transglutaminase-like e 90.0 0.64 2.2E-05 43.3 7.1 72 119-201 127-198 (293)
2 3kd4_A Putative protease; stru 89.5 0.86 3E-05 45.3 8.1 76 119-201 229-304 (506)
3 2f4m_A Peptide N-glycanase; gl 47.2 1.1E+02 0.0038 28.4 9.8 29 173-201 132-160 (295)
4 3h3g_B Parathyroid hormone-rel 36.6 16 0.00054 21.7 1.4 11 41-51 10-20 (24)
5 1x3z_A Peptide: N-glycanase; h 26.7 36 0.0012 32.4 2.9 32 170-201 170-201 (335)
6 2q2k_A Hypothetical protein; p 25.7 27 0.00094 24.9 1.4 25 46-70 41-67 (70)
7 2i9c_A Hypothetical protein RP 25.0 32 0.0011 28.1 1.9 42 264-305 81-122 (123)
8 1ex0_A Coagulation factor XIII 21.7 1.9E+02 0.0066 30.2 7.4 69 132-201 248-331 (731)
9 2lkq_A Immunoglobulin lambda-l 20.3 32 0.0011 20.2 0.7 16 293-308 9-24 (26)
10 1ceu_A Protein (HIV-1 regulato 18.6 1.7E+02 0.0059 20.3 4.3 35 114-155 17-51 (51)
No 1
>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}
Probab=89.97 E-value=0.64 Score=43.29 Aligned_cols=72 Identities=13% Similarity=0.142 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCCCCcCCCccccHHHHHhcccCchHHHHHHHHHHHHHc
Q 021395 119 QLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKML 198 (313)
Q Consensus 119 ~LD~La~ev~~~l~~~~~~~p~~~l~aLn~vLf~elGF~Gn~~~~~Y~dp~NS~L~~VLerR~GiPIsLsiIYleVArRL 198 (313)
++.++|.++.. ...++.+++++|++++.++..|..... . ...-...+|+.|+|.+--.+.+++.++|.+
T Consensus 127 ~i~~~A~~~~~-----~~~~~~~~~~ai~~~v~~~~~Y~~~~~--~----~~~~a~~~l~~~~G~C~d~A~l~val~Ra~ 195 (293)
T 3isr_A 127 KLQKLAYKEFG-----KIENVYSKVLAITDWIYNNVEYISGST--N----SQTSAFDTITERAGVCRDFAHLGIALCRAL 195 (293)
T ss_dssp GSHHHHHHHHT-----TCCSHHHHHHHHHHHHHHHSEECTTSC--C----TTCCHHHHHHHCEECHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc-----cCCCHHHHHHHHHHHHHhhcEEeccCC--C----CCCCHHHhhcCCcEehHHHHHHHHHHHHHC
Confidence 45667777643 234567899999999999887765433 1 112346799999999999999999999999
Q ss_pred CCC
Q 021395 199 RIW 201 (313)
Q Consensus 199 Glp 201 (313)
|||
T Consensus 196 GIP 198 (293)
T 3isr_A 196 SIP 198 (293)
T ss_dssp TCC
T ss_pred CCC
Confidence 999
No 2
>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}
Probab=89.55 E-value=0.86 Score=45.30 Aligned_cols=76 Identities=8% Similarity=0.056 Sum_probs=56.5
Q ss_pred HHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhhhhcCCCCCCCCCCcCCCccccHHHHHhcccCchHHHHHHHHHHHHHc
Q 021395 119 QLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKGFRRTNARNQLIEPRSLYLHSVLTHRTGSAVMLSLIYSEILKML 198 (313)
Q Consensus 119 ~LD~La~ev~~~l~~~~~~~p~~~l~aLn~vLf~elGF~Gn~~~~~Y~dp~NS~L~~VLerR~GiPIsLsiIYleVArRL 198 (313)
.+.+++.++.. +..++.+++++|-.++-++..|.+... .+......-...||++|.|.+...+.+++.++|.+
T Consensus 229 ~i~~~a~~l~~-----~~~~~~ek~~~iy~~V~~~i~y~~~~~--~~~g~~~~~a~~vl~~~~G~C~d~a~Ll~AllRa~ 301 (506)
T 3kd4_A 229 ESKTFAQFLTD-----KSGNEQEKVNIIRDHILNNLSTCPIPM--AMTGYTVRDIDTVLRSAYGTPLEIAQLLNVMLNAA 301 (506)
T ss_dssp HHHHHHHHHHS-----SCSSHHHHHHHHHHHHHHHCEECCCCG--GGGTTCCCCHHHHHHHTEECHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-----cCCCHHHHHHHHHHHHHhccEecceec--ccCCCCCCCHHHHHHhCCcchHHHHHHHHHHHHHC
Confidence 44455555533 346788999999999888877665332 22211223478999999999999999999999999
Q ss_pred CCC
Q 021395 199 RIW 201 (313)
Q Consensus 199 Glp 201 (313)
|||
T Consensus 302 GIp 304 (506)
T 3kd4_A 302 GIP 304 (506)
T ss_dssp TCC
T ss_pred CCC
Confidence 999
No 3
>2f4m_A Peptide N-glycanase; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: d.3.1.4 PDB: 2f4o_A*
Probab=47.21 E-value=1.1e+02 Score=28.40 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=27.5
Q ss_pred HHHHHhcccCchHHHHHHHHHHHHHcCCC
Q 021395 173 LHSVLTHRTGSAVMLSLIYSEILKMLRIW 201 (313)
Q Consensus 173 L~~VLerR~GiPIsLsiIYleVArRLGlp 201 (313)
...+|++|+|.+--.+.+++.++|.+|||
T Consensus 132 ~~~~l~~r~G~C~d~A~lf~al~Ra~GIp 160 (295)
T 2f4m_A 132 PEKLLETRCGRCGEWANCFTLCCRALGFE 160 (295)
T ss_dssp HHHHHHHCEESHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCEeeHHHHHHHHHHHHHCCCC
Confidence 34899999999999999999999999999
No 4
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=36.58 E-value=16 Score=21.67 Aligned_cols=11 Identities=27% Similarity=0.646 Sum_probs=9.3
Q ss_pred HHHHHHhhhhc
Q 021395 41 KLALHDVLDSI 51 (313)
Q Consensus 41 ~~~~~~~~~~~ 51 (313)
++|||++|+..
T Consensus 10 r~wL~~ll~~v 20 (24)
T 3h3g_B 10 RFFLHHLIAEI 20 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 69999999864
No 5
>1x3z_A Peptide: N-glycanase; hydrolase-hydrolase inhibitor complex; HET: SUC; 2.80A {Saccharomyces cerevisiae} SCOP: d.3.1.4 PDB: 1x3w_A* 3esw_A*
Probab=26.67 E-value=36 Score=32.39 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=29.3
Q ss_pred cccHHHHHhcccCchHHHHHHHHHHHHHcCCC
Q 021395 170 SLYLHSVLTHRTGSAVMLSLIYSEILKMLRIW 201 (313)
Q Consensus 170 NS~L~~VLerR~GiPIsLsiIYleVArRLGlp 201 (313)
..-.-.+|++|+|.+--.+.+++.++|.+|+|
T Consensus 170 Yn~~~~ll~tr~G~C~e~A~lF~~llRalGi~ 201 (335)
T 1x3z_A 170 YNDPIKLLETRKGRCGEWCNLFTLILKSFGLD 201 (335)
T ss_dssp ECCHHHHHHHCEECHHHHHHHHHHHHHTTTCC
T ss_pred cCCHHHHHHhCCcChHHHHHHHHHHHHHCCCC
Confidence 34556999999999999999999999999999
No 6
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=25.66 E-value=27 Score=24.89 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=21.4
Q ss_pred Hhhh--hcccccHHHHHHHHHHHHHHh
Q 021395 46 DVLD--SIGTDTTFAREAREGFYSQIK 70 (313)
Q Consensus 46 ~~~~--~~~~~~~~~~~ar~~F~~~l~ 70 (313)
|.|+ --|+.|+|.+++.+++++||.
T Consensus 41 dflenvprgtktahirealrryieeig 67 (70)
T 2q2k_A 41 DFLENVPRGTKTAHIREALRRYIEEIG 67 (70)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCCccchHHHHHHHHHHHHHhc
Confidence 4566 469999999999999999986
No 7
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=24.97 E-value=32 Score=28.12 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=27.4
Q ss_pred hhhhchhhHHHHhhhcCCCchhhhhHhHHHHHHHHHhccccc
Q 021395 264 SLFLRAARAANCIDQLNSGDSGLQLASAKAARHRLERGVWNS 305 (313)
Q Consensus 264 ~l~L~~~~~a~~~dr~~~~~~~~~~~~~~~a~~~ler~~w~~ 305 (313)
++.+.|+.+-..+.+-.-.+.+.+--.|+.++.++|.|.|+-
T Consensus 81 ~L~~~p~~A~~vLe~ia~~~~~~~~f~A~m~L~~we~G~~~p 122 (123)
T 2i9c_A 81 TLAVAPVKAREQLEAIVSSKWFPQAGDAGMCLDLLDDGTFKP 122 (123)
T ss_dssp TTTTCHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHSSCCC
T ss_pred HHhhChHHHHHHHHHHHhCCCCCccccHHHHHHHHHcCCCCC
Confidence 444445555544444431113457788999999999999984
No 8
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A
Probab=21.66 E-value=1.9e+02 Score=30.19 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=47.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhhhc--C-CCCCCCCCCcC--------CCccccHHHHHhccc----CchHHHHHHHHHHHH
Q 021395 132 SSGFRSSPESVLESIERYLFDKK--G-FRRTNARNQLI--------EPRSLYLHSVLTHRT----GSAVMLSLIYSEILK 196 (313)
Q Consensus 132 ~~~~~~~p~~~l~aLn~vLf~el--G-F~Gn~~~~~Y~--------dp~NS~L~~VLerR~----GiPIsLsiIYleVAr 196 (313)
......+|.....+|...+...- | ..||+.. +|. ...+..|.+-+.+|+ |.+=-.|-+...+.|
T Consensus 248 ~~~~r~dpv~v~r~lsa~vn~~dD~GVL~GnW~~-~y~~g~~P~~~~gs~~il~~~~~~~~PV~~G~C~~fA~v~~~~lR 326 (731)
T 1ex0_A 248 DLSGRGNPIKVSRVGSAMVNAKDDEGVLVGSFDN-IYAYGVPPSAWTGSVDILLEYRSSENPVRYGQCWVFAGVFNTFLR 326 (731)
T ss_dssp CGGGTTCHHHHHHHHHHHHBCSTTCSSEEECCSS-CCTTSCCGGGCCBSHHHHHHHHHHTSCEEEECHHHHHHHHHHHHH
T ss_pred CcccCCCHHHHHHHHHHHhhcCCcCceeeccccc-ccCCCcCCcccCChHHHHHHHHhcCCccceeeehhHHHHHHHHHH
Confidence 34455778888888888776542 2 2234330 222 122345666677777 999999999999999
Q ss_pred HcCCC
Q 021395 197 MLRIW 201 (313)
Q Consensus 197 RLGlp 201 (313)
.||||
T Consensus 327 ~lGIP 331 (731)
T 1ex0_A 327 CLGIP 331 (731)
T ss_dssp HHTCC
T ss_pred hCCCC
Confidence 99999
No 9
>2lkq_A Immunoglobulin lambda-like polypeptide 1; PRE-BCR, B cell development, immune system; NMR {Homo sapiens}
Probab=20.35 E-value=32 Score=20.24 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=12.4
Q ss_pred HHHHHHHhcccccCCC
Q 021395 293 AARHRLERGVWNSVRF 308 (313)
Q Consensus 293 ~a~~~ler~~w~~~~~ 308 (313)
=.+.-|+||-||.++-
T Consensus 9 wgrfllqrgswtgprc 24 (26)
T 2lkq_A 9 WGRFLLQRGSWTGPRC 24 (26)
T ss_dssp HHHHTHHHHTCCCSCC
T ss_pred HHHHHHHcCCccCCCC
Confidence 3456789999998874
No 10
>1ceu_A Protein (HIV-1 regulatory protein N-terminal domain VPR); helical domain, amphipaticity, viral protein; NMR {Synthetic} SCOP: j.11.1.1 PDB: 1fi0_A
Probab=18.59 E-value=1.7e+02 Score=20.27 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHhhhhcC
Q 021395 114 DALISQLDDLSVGYCSHYSSGFRSSPESVLESIERYLFDKKG 155 (313)
Q Consensus 114 ~~~~~~LD~La~ev~~~l~~~~~~~p~~~l~aLn~vLf~elG 155 (313)
+..+..|..|..++..++ |...|..|-+++|..+|
T Consensus 17 eW~le~LeElk~EAvrHF-------pr~~L~~lgqyiy~~~g 51 (51)
T 1ceu_A 17 DWTLELLEELKNEAVRHF-------PRIWLHSLGQHIYETYG 51 (51)
T ss_dssp HHHHHHHHHHHHHTTTSC-------HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHhC-------CHHHHHHHHHHHHHhhC
Confidence 567778888888877653 78899999999998776
Done!