Query 021396
Match_columns 313
No_of_seqs 33 out of 35
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 03:32:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021396.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021396hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qfa_C Inner centromere protei 51.0 7.3 0.00025 28.2 1.8 15 147-161 31-45 (47)
2 1jmq_A YAP65, 65 kDa YES-assoc 18.0 63 0.0022 21.6 2.0 22 199-221 3-24 (46)
3 2lpd_A Uncharacterized protein 16.8 52 0.0018 26.6 1.5 31 182-212 18-53 (95)
4 2khr_A Protein MBTH; sideropho 16.4 43 0.0015 25.8 0.8 30 183-212 8-42 (74)
5 2pst_X Hypothetical protein PA 16.0 42 0.0014 25.8 0.7 30 183-212 6-40 (74)
6 1xnl_A ASLV/FP, membrane prote 12.6 85 0.0029 20.6 1.3 13 144-156 15-27 (29)
7 3h3g_B Parathyroid hormone-rel 11.7 93 0.0032 19.7 1.3 9 232-240 4-12 (24)
8 3fmb_A Dimeric protein of unkn 9.6 3.5E+02 0.012 21.1 4.3 48 222-269 32-79 (118)
9 3u85_B Histone-lysine N-methyl 8.8 1.1E+02 0.0039 18.7 0.9 13 281-293 1-13 (21)
10 3itw_A Protein TIOX; bleomycin 7.2 69 0.0024 23.5 -0.8 27 212-238 108-134 (137)
No 1
>2qfa_C Inner centromere protein; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=50.99 E-value=7.3 Score=28.16 Aligned_cols=15 Identities=33% Similarity=0.795 Sum_probs=12.5
Q ss_pred HHHHhHHHHHHHHhh
Q 021396 147 ALWLKEIEKQEEAKL 161 (313)
Q Consensus 147 ILwLKEiE~~ee~k~ 161 (313)
.+||.|||++.++..
T Consensus 31 mvWL~EIeeEA~RMF 45 (47)
T 2qfa_C 31 LVWLEEIQEEAERMF 45 (47)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 589999999987654
No 2
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Probab=18.01 E-value=63 Score=21.56 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=15.5
Q ss_pred CCCccccCCCCCcccccCCCchh
Q 021396 199 SSEFKNKPDGWETTAKEQDGNVW 221 (313)
Q Consensus 199 ~p~FKv~P~Gwd~tak~~d~~~w 221 (313)
.|.+.-+|.||+-. .+.+|..|
T Consensus 3 ~P~~~~LP~GWe~~-~~~~gr~y 24 (46)
T 1jmq_A 3 IPDDVPLPAGWEMA-KTSSGQRY 24 (46)
T ss_dssp CCSSCCCCTTBCCB-CCSSCCCB
T ss_pred CCCCCCCCcCcEEE-EcCCCceE
Confidence 47788899999954 44565543
No 3
>2lpd_A Uncharacterized protein; infectious disease, melioidosis, seattle structural genomics for infectious disease, ssgcid, drug target; NMR {Burkholderia pseudomallei}
Probab=16.75 E-value=52 Score=26.59 Aligned_cols=31 Identities=19% Similarity=0.180 Sum_probs=21.6
Q ss_pred hccccCCCCcccccc---CCC--CCccccCCCCCcc
Q 021396 182 EIFDSTNDDLDNAKI---PSS--SEFKNKPDGWETT 212 (313)
Q Consensus 182 e~F~s~n~E~Hv~~l---P~~--p~FKv~P~Gwd~t 212 (313)
-=|+..++.|.|..= -|+ |.|..+|+||...
T Consensus 18 ~PFDd~~~~f~VLvN~E~QYSLWP~~~~VPaGW~~v 53 (95)
T 2lpd_A 18 GPGSMDDELYFVVRNNEGQYSVWMDGRSLPAGWETV 53 (95)
T ss_dssp CSCSSCCCCEEEEECSSCSCEEEETTSCCCTTCEEE
T ss_pred CCCcCCCCcEEEEEcCCCccccCcCCCCCCCCcccC
Confidence 347777777765532 222 9999999999854
No 4
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2-hydroxyphenyloxazolin tuberculosis, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=16.40 E-value=43 Score=25.84 Aligned_cols=30 Identities=27% Similarity=0.427 Sum_probs=20.3
Q ss_pred ccccCCCCcccccc---CCC--CCccccCCCCCcc
Q 021396 183 IFDSTNDDLDNAKI---PSS--SEFKNKPDGWETT 212 (313)
Q Consensus 183 ~F~s~n~E~Hv~~l---P~~--p~FKv~P~Gwd~t 212 (313)
-|+..++.|.|..= -|+ |.|+.+|+||...
T Consensus 8 pfdd~~~~f~VlvN~E~QySLWP~~~~vP~GW~~v 42 (74)
T 2khr_A 8 PFDDDNGAFFVLVNDEDQHSLWPVFADIPAGWRVV 42 (74)
T ss_dssp CCSCCCSCEEEEEETTCSCEEEETTSCCCSSEEEE
T ss_pred CCCCCCCeEEEEEcCCCccccCcCcCCCCCCcccC
Confidence 36666777755432 222 9999999999844
No 5
>2pst_X Hypothetical protein PA2412; pyoverdine synthesis, non-ribosomal peptide synthesis cluste like family, COG3251, unknown function; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: d.100.2.1 PDB: 2gpf_A
Probab=15.98 E-value=42 Score=25.84 Aligned_cols=30 Identities=27% Similarity=0.582 Sum_probs=17.7
Q ss_pred ccccCCCCcccccc---CCC--CCccccCCCCCcc
Q 021396 183 IFDSTNDDLDNAKI---PSS--SEFKNKPDGWETT 212 (313)
Q Consensus 183 ~F~s~n~E~Hv~~l---P~~--p~FKv~P~Gwd~t 212 (313)
-|+..++.|.|..= -|+ |.|+.+|+||...
T Consensus 6 pfdd~~~~f~VlvN~E~QySLWP~~~~vP~GW~~v 40 (74)
T 2pst_X 6 VFDRDDIQFQVVVNHEEQYSIWPEYKEIPQGWRAA 40 (74)
T ss_dssp ----CCSCEEEEEETTCCEEEEETTSCCCTTEEEE
T ss_pred CCcCCCCeEEEEEcCCCccccCcCCCCCCCCcccC
Confidence 46666676755432 122 9999999999854
No 6
>1xnl_A ASLV/FP, membrane protein GP37; fusion protein, virus entry, membrane fusion, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=12.58 E-value=85 Score=20.57 Aligned_cols=13 Identities=46% Similarity=0.537 Sum_probs=10.7
Q ss_pred HHHHHHHhHHHHH
Q 021396 144 IHAALWLKEIEKQ 156 (313)
Q Consensus 144 VhAILwLKEiE~~ 156 (313)
|-|.-+|||||..
T Consensus 15 vaAAqAL~eIERL 27 (29)
T 1xnl_A 15 VAAAQALREIERL 27 (29)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6788899999963
No 7
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=11.71 E-value=93 Score=19.68 Aligned_cols=9 Identities=33% Similarity=0.667 Sum_probs=7.4
Q ss_pred HHHHHHHhh
Q 021396 232 LQEFDRRIA 240 (313)
Q Consensus 232 lqEF~rRl~ 240 (313)
+|+|.|||=
T Consensus 4 ~Q~~rRr~w 12 (24)
T 3h3g_B 4 IQDLRRRFF 12 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 689999974
No 8
>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}
Probab=9.62 E-value=3.5e+02 Score=21.15 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=29.7
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhcccccchhhccccccCCCCCceeEEE
Q 021396 222 EMSQREEDILLQEFDRRIAYCKFQIASFIKTHIFSRRRPIDGWKYMIE 269 (313)
Q Consensus 222 EiS~kEe~iLlqEF~rRl~yNk~kiag~Ik~h~~SRRRP~~GW~~mVe 269 (313)
+.+..+-+-.+++|.+.|.=-+.+||+...-+.=.--.|++||.+.+.
T Consensus 32 ~~~~~~~~~~~~~~~~~l~~L~~~IP~i~~~~vG~~~s~~~~yd~~l~ 79 (118)
T 3fmb_A 32 DVPVEEKLVVMNSFKEAIEALPAKISVIRKIEVGLNMNPGETWNIALY 79 (118)
T ss_dssp TSCHHHHHHHHHHHHHHHHTGGGTCTTCSEEEEEECCCTTCCCCEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEEeccCCCCCCceEEEE
Confidence 355555566788888888766678988533111111226778888764
No 9
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=8.83 E-value=1.1e+02 Score=18.68 Aligned_cols=13 Identities=23% Similarity=0.271 Sum_probs=10.1
Q ss_pred CccccccCCCCCC
Q 021396 281 SVSRLPGLSDPST 293 (313)
Q Consensus 281 ~~~~~vs~pDGS~ 293 (313)
+.|+||+.|-||.
T Consensus 1 srwrfparpg~s~ 13 (21)
T 3u85_B 1 SRWRFPARPGTTG 13 (26)
T ss_pred CccccccCCCccc
Confidence 3589999998764
No 10
>3itw_A Protein TIOX; bleomycin resistance fold, bisintercalator, solvent-exposed residue, thiocoraline, protein binding, peptide binding Pro; 2.15A {Micromonospora SP}
Probab=7.18 E-value=69 Score=23.51 Aligned_cols=27 Identities=19% Similarity=0.555 Sum_probs=13.2
Q ss_pred ccccCCCchhhhhhhHHHHHHHHHHHH
Q 021396 212 TAKEQDGNVWEMSQREEDILLQEFDRR 238 (313)
Q Consensus 212 tak~~d~~~wEiS~kEe~iLlqEF~rR 238 (313)
..+|+||+.||+.+.-++.=-+|..+|
T Consensus 108 ~~~DPdG~~iel~~~~~~~~~~e~~~~ 134 (137)
T 3itw_A 108 LVRDLEGHLWEFTRHLRDVPPREWGAV 134 (137)
T ss_dssp EEECSSSCEEEEEECC-----------
T ss_pred EEECCCCCEEEEEEEcCCCCHHHHhhh
Confidence 468999999998876544433343333
Done!