Query 021396
Match_columns 313
No_of_seqs 33 out of 35
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 03:33:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021396.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021396hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o59a1 b.18.1.22 (A:0-187) Al 16.6 34 0.0024 28.1 2.5 30 192-221 47-84 (188)
2 d1ku3a_ a.4.13.2 (A:) Sigma70 13.6 46 0.0034 22.3 2.1 30 115-148 20-49 (61)
3 d2p7vb1 a.4.13.2 (B:546-613) S 11.3 62 0.0045 22.1 2.3 29 115-147 17-45 (68)
4 d1xy7a_ d.32.1.9 (A:) Hypothet 11.3 23 0.0016 24.9 -0.2 14 212-225 122-135 (135)
5 d1nyra2 d.15.10.1 (A:4-62) Thr 11.1 47 0.0034 21.8 1.5 15 286-300 3-17 (59)
6 d2cu7a1 a.4.1.3 (A:8-72) MYSM1 10.9 50 0.0037 21.5 1.6 26 226-251 7-32 (65)
7 d3ci0k1 a.60.16.1 (K:204-274) 10.5 36 0.0026 24.1 0.7 9 258-266 35-43 (71)
8 d1uc8a1 c.30.1.6 (A:1-88) Lysi 9.8 67 0.0049 22.5 2.0 19 220-238 5-23 (88)
9 d1ecsa_ d.32.1.2 (A:) Bleomyci 9.7 21 0.0015 24.4 -0.8 15 212-226 104-118 (120)
10 d1ttya_ a.4.13.2 (A:) Sigma70 9.3 74 0.0054 22.7 2.1 29 115-147 30-58 (87)
No 1
>d1o59a1 b.18.1.22 (A:0-187) Allantoicase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.62 E-value=34 Score=28.13 Aligned_cols=30 Identities=27% Similarity=0.425 Sum_probs=24.4
Q ss_pred cccccCCCCCc--------cccCCCCCcccccCCCchh
Q 021396 192 DNAKIPSSSEF--------KNKPDGWETTAKEQDGNVW 221 (313)
Q Consensus 192 Hv~~lP~~p~F--------Kv~P~Gwd~tak~~d~~~w 221 (313)
++...|..|.| ..|-+||++..+-..|..|
T Consensus 47 ~nll~p~~pv~~~~~~~~~g~m~DGWETrRrR~~g~DW 84 (188)
T d1o59a1 47 ENLIQPTAPIRDPTRFVHSGAWYDGWETRRHNEMEYDW 84 (188)
T ss_dssp GGGGCSSCCCCC---------CCSSEECCSSCSSSCEE
T ss_pred HHhcCCCCcccccccccccCccccccccccccCCCCce
Confidence 67788999886 5899999999888888888
No 2
>d1ku3a_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermus aquaticus [TaxId: 271]}
Probab=13.58 E-value=46 Score=22.29 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=23.3
Q ss_pred cccccCCCCCCcccchHHHHhHhhHhhhhHHHHH
Q 021396 115 SVGLGAEGSGDKLYSLESIKKDYRLKKQRIHAAL 148 (313)
Q Consensus 115 MY~lh~e~~~p~~ytVe~LAkdYRirkQRVhAIL 148 (313)
-|+++.. +.+|+..+|+.|-|=+.||.-|.
T Consensus 20 ryGl~~~----~~~tl~eIa~~lgiS~erVrqi~ 49 (61)
T d1ku3a_ 20 RKGLIDG----REHTLEEVGAYFGVTRERIRQIE 49 (61)
T ss_dssp HHTTTTS----SCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HhCCCCC----CCCCHHHHHHHHCCCHHHHHHHH
Confidence 3556543 36899999999999999998664
No 3
>d2p7vb1 a.4.13.2 (B:546-613) Sigma70 (SigA, RpoD) {Escherichia coli [TaxId: 562]}
Probab=11.35 E-value=62 Score=22.15 Aligned_cols=29 Identities=24% Similarity=0.556 Sum_probs=22.4
Q ss_pred cccccCCCCCCcccchHHHHhHhhHhhhhHHHH
Q 021396 115 SVGLGAEGSGDKLYSLESIKKDYRLKKQRIHAA 147 (313)
Q Consensus 115 MY~lh~e~~~p~~ytVe~LAkdYRirkQRVhAI 147 (313)
-|+++.. +..|++.+|+.|-|=++||.-|
T Consensus 17 rfGl~~~----~~~tl~eI~~~lgiSrerVrqi 45 (68)
T d2p7vb1 17 RFGIDMN----TDYTLEEVGKQFDVTRERIRQI 45 (68)
T ss_dssp HTTTTSS----SCCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCCC----CcCCHHHHHHHHCCCHHHHHHH
Confidence 3555433 3679999999999999999755
No 4
>d1xy7a_ d.32.1.9 (A:) Hypothetical protein At5g48480 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=11.27 E-value=23 Score=24.93 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=11.2
Q ss_pred ccccCCCchhhhhh
Q 021396 212 TAKEQDGNVWEMSQ 225 (313)
Q Consensus 212 tak~~d~~~wEiS~ 225 (313)
.-+|++|+.|+|||
T Consensus 122 ~v~Dp~G~~W~i~e 135 (135)
T d1xy7a_ 122 KVTDPFGVTWIFAE 135 (135)
T ss_dssp EEECTTSCEEEEEC
T ss_pred EEECCCCCEEEEeC
Confidence 56888899998875
No 5
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}
Probab=11.10 E-value=47 Score=21.83 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=12.2
Q ss_pred ccCCCCCCCCCCcCc
Q 021396 286 PGLSDPSTQPFKEDR 300 (313)
Q Consensus 286 vs~pDGS~RpLnEdE 300 (313)
+.+|||+.+.|..--
T Consensus 3 ItlPDG~~~~~~~g~ 17 (59)
T d1nyra2 3 IQFPDGNKKAFDKGT 17 (59)
T ss_dssp BCCTTSCCCBCCTTC
T ss_pred EECCCCCEEEcCCCC
Confidence 578999999998643
No 6
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.94 E-value=50 Score=21.49 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHhhhhhcccccchh
Q 021396 226 REEDILLQEFDRRIAYCKFQIASFIK 251 (313)
Q Consensus 226 kEe~iLlqEF~rRl~yNk~kiag~Ik 251 (313)
.||+.||.+++...--|=.+||.+|.
T Consensus 7 ~eEd~~l~~~~~~~G~~W~~Ia~~~~ 32 (65)
T d2cu7a1 7 IEEKELFEQGLAKFGRRWTKISKLIG 32 (65)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHcC
Confidence 46777777777777655557777764
No 7
>d3ci0k1 a.60.16.1 (K:204-274) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=10.46 E-value=36 Score=24.10 Aligned_cols=9 Identities=44% Similarity=1.210 Sum_probs=7.4
Q ss_pred cCCCCCcee
Q 021396 258 RRPIDGWKY 266 (313)
Q Consensus 258 RRP~~GW~~ 266 (313)
.||.+||.=
T Consensus 35 ~RP~~Gw~s 43 (71)
T d3ci0k1 35 QRPAKGWED 43 (71)
T ss_dssp TCCTTCCSC
T ss_pred hCCcchhhh
Confidence 489999974
No 8
>d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=9.79 E-value=67 Score=22.48 Aligned_cols=19 Identities=11% Similarity=0.350 Sum_probs=15.4
Q ss_pred hhhhhhhHHHHHHHHHHHH
Q 021396 220 VWEMSQREEDILLQEFDRR 238 (313)
Q Consensus 220 ~wEiS~kEe~iLlqEF~rR 238 (313)
+|..-.-||+.|+++|.+|
T Consensus 5 ly~~~R~eEk~L~~a~~~r 23 (88)
T d1uc8a1 5 LYDRIRPDERMLFERAEAL 23 (88)
T ss_dssp EESSCCHHHHHHHHHHHHH
T ss_pred EEccccHHHHHHHHHHHHC
Confidence 3455567999999999998
No 9
>d1ecsa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Klebsiella pneumoniae [TaxId: 573]}
Probab=9.72 E-value=21 Score=24.39 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=12.3
Q ss_pred ccccCCCchhhhhhh
Q 021396 212 TAKEQDGNVWEMSQR 226 (313)
Q Consensus 212 tak~~d~~~wEiS~k 226 (313)
.-+|+||+.|||-|.
T Consensus 104 ~~~DPDGn~iei~q~ 118 (120)
T d1ecsa_ 104 ALVDPDGTLLRLIQN 118 (120)
T ss_dssp EEECTTSCEEEEEEC
T ss_pred EEECCCCCEEEEEEc
Confidence 368999999998764
No 10
>d1ttya_ a.4.13.2 (A:) Sigma70 (SigA, RpoD) {Thermotoga maritima [TaxId: 2336]}
Probab=9.32 E-value=74 Score=22.71 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=22.7
Q ss_pred cccccCCCCCCcccchHHHHhHhhHhhhhHHHH
Q 021396 115 SVGLGAEGSGDKLYSLESIKKDYRLKKQRIHAA 147 (313)
Q Consensus 115 MY~lh~e~~~p~~ytVe~LAkdYRirkQRVhAI 147 (313)
-|+++... ..|++.+|+.|-|=+.||.-|
T Consensus 30 rfGl~~~~----~~tl~eI~~~lgiSrERVRQi 58 (87)
T d1ttya_ 30 RYGLLDGK----PKTLEEVGQYFNVTRERIRQI 58 (87)
T ss_dssp HHTTTTSS----CCCHHHHHHHHTCCHHHHHHH
T ss_pred HcCCCCCC----cCCHHHHHHHhCCCHHHHHHH
Confidence 45665444 679999999999999998754
Done!