Your job contains 1 sequence.
>021397
MLCTLDGEISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELK
CKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA
PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR
LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRR
SGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLD
PERTDSVTNLQVT
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021397
(313 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2156902 - symbol:AT5G66180 species:3702 "Arabi... 1033 2.5e-104 1
UNIPROTKB|Q5HVD5 - symbol:CJE0739 "NOL1/NOP2/sun family p... 127 1.1e-05 1
TIGR_CMR|CJE_0739 - symbol:CJE_0739 "NOL1/NOP2/sun family... 127 1.1e-05 1
MGI|MGI:2140844 - symbol:Nsun5 "NOL1/NOP2/Sun domain fami... 130 1.5e-05 1
UNIPROTKB|Q749J3 - symbol:GSU2749 "NOL1/NOP2/Sun (TRNA an... 125 2.7e-05 1
TIGR_CMR|GSU_2749 - symbol:GSU_2749 "NOL1/NOP2/sun family... 125 2.7e-05 1
UNIPROTKB|Q9V106 - symbol:PYRAB06230 "tRNA (cytosine(49)-... 123 4.3e-05 1
UNIPROTKB|Q96CB9 - symbol:NSUN4 "5-methylcytosine rRNA me... 108 7.2e-05 2
TIGR_CMR|CPS_0018 - symbol:CPS_0018 "sun protein" species... 121 0.00014 1
UNIPROTKB|Q0V8R7 - symbol:NSUN4 "5-methylcytosine rRNA me... 104 0.00021 2
UNIPROTKB|Q96P11 - symbol:NSUN5 "Putative methyltransfera... 118 0.00029 1
MGI|MGI:1919431 - symbol:Nsun4 "NOL1/NOP2/Sun domain fami... 102 0.00034 2
TAIR|locus:2009170 - symbol:AT1G06560 species:3702 "Arabi... 119 0.00036 1
UNIPROTKB|Q0BWV2 - symbol:HNE_3368 "Putative ribosomal RN... 117 0.00036 1
DICTYBASE|DDB_G0281685 - symbol:nol1 "NOL1/NOP2/Sun famil... 109 0.00038 2
ZFIN|ZDB-GENE-041212-77 - symbol:nsun4 "NOL1/NOP2/Sun dom... 107 0.00045 2
UNIPROTKB|E1C522 - symbol:NSUN4 "Uncharacterized protein"... 109 0.00054 2
UNIPROTKB|F1S3W1 - symbol:NSUN4 "Uncharacterized protein"... 99 0.00074 2
>TAIR|locus:2156902 [details] [associations]
symbol:AT5G66180 species:3702 "Arabidopsis thaliana"
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006487 "protein N-linked
glycosylation" evidence=RCA] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] Pfam:PF01189 EMBL:CP002688 GO:GO:0008168
UniGene:At.47570 UniGene:At.49233 InterPro:IPR001678
InterPro:IPR023267 PRINTS:PR02008 IPI:IPI00541665
RefSeq:NP_201419.2 ProteinModelPortal:F4JZ42 SMR:F4JZ42
PRIDE:F4JZ42 EnsemblPlants:AT5G66180.1 GeneID:836750
KEGG:ath:AT5G66180 OMA:DAECTHD InterPro:IPR023269 PRINTS:PR02010
Uniprot:F4JZ42
Length = 395
Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
Identities = 198/304 (65%), Positives = 242/304 (79%)
Query: 8 EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
E SKL LPE+FL FL+ NGLDPS+Y+ DS PRY+RLK G E EEIE+E+ CKLEKV
Sbjct: 3 ETSKLQLPESFLSFLEANGLDPSIYTHGDSIPRYVRLKPGFEDAFEEIESEINCKLEKVN 62
Query: 68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
WL GFYS+PPD+ IA + AY+QG +YGIDAASGAAVSAL IS GDHVLDLCAAPGAKLCM
Sbjct: 63 WLPGFYSIPPDVHIARTKAYQQGMMYGIDAASGAAVSALGISPGDHVLDLCAAPGAKLCM 122
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS 187
+LD++G G+ TGVDVARHRLAACRT+L KY L +R RLF+ADGTTFS+ P R L P
Sbjct: 123 MLDLLGQKGTATGVDVARHRLAACRTMLLKYGLAERSRLFLADGTTFSVPPTRNL--P-- 178
Query: 188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLT 247
C S + + +DTF++WTSR P+KERK+ KAR+N+ + ++ E+IFYG+ SG++GL
Sbjct: 179 CESCVDDHEDTFKQWTSRRPYKERKQEAKARKNSV---LPQNGQAEIIFYGQGSGVIGLK 235
Query: 248 KEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSV 307
K E+Y+S+ ++ +S GYDKVLVDAECTHDGSIKHIQKFE WGW TL+RRVLD ERTD
Sbjct: 236 KNELYRSLDQNDYASYGYDKVLVDAECTHDGSIKHIQKFEQWGWKTLERRVLDAERTD-- 293
Query: 308 TNLQ 311
TNL+
Sbjct: 294 TNLK 297
>UNIPROTKB|Q5HVD5 [details] [associations]
symbol:CJE0739 "NOL1/NOP2/sun family protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF01189 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0144 InterPro:IPR001678 InterPro:IPR023267 PRINTS:PR02008
HOGENOM:HOG000224258 RefSeq:YP_178750.1 ProteinModelPortal:Q5HVD5
STRING:Q5HVD5 GeneID:3230692 KEGG:cjr:CJE0739 PATRIC:20043207
OMA:YSEEVRK ProtClustDB:CLSK878876
BioCyc:CJEJ195099:GJC0-756-MONOMER Uniprot:Q5HVD5
Length = 279
Score = 127 (49.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 60/231 (25%), Positives = 106/231 (45%)
Query: 52 LEEIEAE-LKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALN 107
+EE+E E LK KL K ++ + L D I +SM + + Y + +S L
Sbjct: 25 IEELEKEFLKQKL-KFKKINAYCYLFDAKDKAILSSMKVFNEAHFYIQNYSSYLCALNLE 83
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167
+ AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F
Sbjct: 84 VKAGQRVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVF 141
Query: 168 VADGTTF-SLAPLR---LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAAS 223
+ DG +L PL+ +LLD C++ + D + + KE K K ++
Sbjct: 142 MKDGKNIGNLCPLKFDKILLD-APCSTFAKIGFDLEKSY------KEIKNIAKTQKKLLH 194
Query: 224 KAIVRSE-HPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAE 273
A+ + EL++ TKEE + + N+ S + + +D E
Sbjct: 195 SALKALKIGGELVY-----STCTFTKEENEEVIENALKSEFKLELLDIDLE 240
>TIGR_CMR|CJE_0739 [details] [associations]
symbol:CJE_0739 "NOL1/NOP2/sun family protein"
species:195099 "Campylobacter jejuni RM1221" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF01189 EMBL:CP000025 GenomeReviews:CP000025_GR
eggNOG:COG0144 InterPro:IPR001678 InterPro:IPR023267 PRINTS:PR02008
HOGENOM:HOG000224258 RefSeq:YP_178750.1 ProteinModelPortal:Q5HVD5
STRING:Q5HVD5 GeneID:3230692 KEGG:cjr:CJE0739 PATRIC:20043207
OMA:YSEEVRK ProtClustDB:CLSK878876
BioCyc:CJEJ195099:GJC0-756-MONOMER Uniprot:Q5HVD5
Length = 279
Score = 127 (49.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 60/231 (25%), Positives = 106/231 (45%)
Query: 52 LEEIEAE-LKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALN 107
+EE+E E LK KL K ++ + L D I +SM + + Y + +S L
Sbjct: 25 IEELEKEFLKQKL-KFKKINAYCYLFDAKDKAILSSMKVFNEAHFYIQNYSSYLCALNLE 83
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167
+ AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F
Sbjct: 84 VKAGQRVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVF 141
Query: 168 VADGTTF-SLAPLR---LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAAS 223
+ DG +L PL+ +LLD C++ + D + + KE K K ++
Sbjct: 142 MKDGKNIGNLCPLKFDKILLD-APCSTFAKIGFDLEKSY------KEIKNIAKTQKKLLH 194
Query: 224 KAIVRSE-HPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAE 273
A+ + EL++ TKEE + + N+ S + + +D E
Sbjct: 195 SALKALKIGGELVY-----STCTFTKEENEEVIENALKSEFKLELLDIDLE 240
>MGI|MGI:2140844 [details] [associations]
symbol:Nsun5 "NOL1/NOP2/Sun domain family, member 5"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] [GO:0008168
"methyltransferase activity" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0032259 "methylation" evidence=IEA]
Pfam:PF01189 MGI:MGI:2140844 GO:GO:0008168 KO:K15264 eggNOG:COG0144
InterPro:IPR001678 InterPro:IPR023267 PRINTS:PR02008 HSSP:Q96P11
CTD:55695 HOGENOM:HOG000203203 HOVERGEN:HBG062278 OMA:TLKTCSD
EMBL:AF412029 EMBL:AK079400 EMBL:AK149521 EMBL:AK156651
EMBL:BC051209 IPI:IPI00311260 RefSeq:NP_663389.2 UniGene:Mm.281189
ProteinModelPortal:Q8K4F6 SMR:Q8K4F6 STRING:Q8K4F6 PRIDE:Q8K4F6
DNASU:100609 Ensembl:ENSMUST00000000940 GeneID:100609
KEGG:mmu:100609 UCSC:uc008zyh.1 GeneTree:ENSGT00550000074709
InParanoid:Q8K4F6 OrthoDB:EOG48GW3D NextBio:354548 Bgee:Q8K4F6
CleanEx:MM_NSUN5 Genevestigator:Q8K4F6
GermOnline:ENSMUSG00000000916 Uniprot:Q8K4F6
Length = 465
Score = 130 (50.8 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 61/213 (28%), Positives = 90/213 (42%)
Query: 21 FLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCK---LEKVVWLSGFYSLPP 77
F++ N L A D R G + LE++ A LK + L+ + L P
Sbjct: 137 FVRVNTLKTRPEDAIDYFKRQGFSYQGRASSLEDLRA-LKGQHFLLDPL--LPELLVFPA 193
Query: 78 DIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGS 137
+ Y+ G + D AS L+ G HV+D CAAPG K I ++ + G
Sbjct: 194 QTDLHEHPLYRAGHLILQDKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGK 253
Query: 138 VTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSCNS- 190
+ D RLAA TL+ + + C L D T S + R +LLDP SC+
Sbjct: 254 IFAFDQDAKRLAAMATLVARAGVSC-CELAEKDFLTVSPSDQRYSQVQYILLDP-SCSGS 311
Query: 191 -VLQEKDDTFREWTSRIPWKERKRAVKARENAA 222
+L + + E T P KER +A+ + A
Sbjct: 312 GMLSRQLEEHGEGT---PSKERLQALAGFQQRA 341
>UNIPROTKB|Q749J3 [details] [associations]
symbol:GSU2749 "NOL1/NOP2/Sun (TRNA and rRNA
cytosine-C5-methyltransferase) family protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
Pfam:PF01189 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008168
InterPro:IPR001678 InterPro:IPR023267 PRINTS:PR02008
HOGENOM:HOG000224258 OMA:YSEEVRK RefSeq:NP_953794.1
ProteinModelPortal:Q749J3 GeneID:2685973 KEGG:gsu:GSU2749
PATRIC:22028341 ProtClustDB:CLSK2761235
BioCyc:GSUL243231:GH27-2740-MONOMER Uniprot:Q749J3
Length = 319
Score = 125 (49.1 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 59/230 (25%), Positives = 99/230 (43%)
Query: 13 PLPEAFLDFLKE----NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCK-LEKVV 67
PLP FL ++E + D + S + P +RL + D +E EL+ + V
Sbjct: 8 PLPVPFLALMEEVLPPDLRDACLASFSQEKPTSLRLNP-LKGDPDETRRELESAGFDPVP 66
Query: 68 --WLSGFYSLPPDIK--IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
W +++ + + + S +++G+IY +S A AL G+ VLDL AAPG
Sbjct: 67 VSWYPLAFTVDGERRRALTESPPFREGRIYIQSLSSMTAPLALAPEPGETVLDLAAAPGG 126
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL-APL--- 179
K M+ ++ + G ++ V+ R R + L R ++ DG + P
Sbjct: 127 KTAMMAAMMENRGRLSAVEAVRGRFFRMKANLDHQG-ATMVRTYLTDGRSVGRKCPEMFD 185
Query: 180 RLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRS 229
R+LLD C+S + W W RK AR+ + ++RS
Sbjct: 186 RVLLD-APCSSEARFTRLNPESWAH---WSPRKVEEAARKQ---RGLIRS 228
>TIGR_CMR|GSU_2749 [details] [associations]
symbol:GSU_2749 "NOL1/NOP2/sun family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF01189 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0008168 InterPro:IPR001678 InterPro:IPR023267 PRINTS:PR02008
HOGENOM:HOG000224258 OMA:YSEEVRK RefSeq:NP_953794.1
ProteinModelPortal:Q749J3 GeneID:2685973 KEGG:gsu:GSU2749
PATRIC:22028341 ProtClustDB:CLSK2761235
BioCyc:GSUL243231:GH27-2740-MONOMER Uniprot:Q749J3
Length = 319
Score = 125 (49.1 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 59/230 (25%), Positives = 99/230 (43%)
Query: 13 PLPEAFLDFLKE----NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCK-LEKVV 67
PLP FL ++E + D + S + P +RL + D +E EL+ + V
Sbjct: 8 PLPVPFLALMEEVLPPDLRDACLASFSQEKPTSLRLNP-LKGDPDETRRELESAGFDPVP 66
Query: 68 --WLSGFYSLPPDIK--IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
W +++ + + + S +++G+IY +S A AL G+ VLDL AAPG
Sbjct: 67 VSWYPLAFTVDGERRRALTESPPFREGRIYIQSLSSMTAPLALAPEPGETVLDLAAAPGG 126
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL-APL--- 179
K M+ ++ + G ++ V+ R R + L R ++ DG + P
Sbjct: 127 KTAMMAAMMENRGRLSAVEAVRGRFFRMKANLDHQG-ATMVRTYLTDGRSVGRKCPEMFD 185
Query: 180 RLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRS 229
R+LLD C+S + W W RK AR+ + ++RS
Sbjct: 186 RVLLD-APCSSEARFTRLNPESWAH---WSPRKVEEAARKQ---RGLIRS 228
>UNIPROTKB|Q9V106 [details] [associations]
symbol:PYRAB06230 "tRNA
(cytosine(49)-C(5))-methyltransferase" species:272844 "Pyrococcus
abyssi GE5" [GO:0000049 "tRNA binding" evidence=IDA] [GO:0016428
"tRNA (cytosine-5-)-methyltransferase activity" evidence=IDA]
[GO:0030488 "tRNA methylation" evidence=IDA] InterPro:IPR011023
PROSITE:PS01153 Pfam:PF01189 GO:GO:0005737 GO:GO:0000049
EMBL:HE613800 GenomeReviews:AL096836_GR GO:GO:0006364
eggNOG:COG0144 GO:GO:0016428 InterPro:IPR001678 InterPro:IPR023267
PRINTS:PR02008 HOGENOM:HOG000224258 TIGRFAMs:TIGR00446
EMBL:AJ248284 PIR:B75183 RefSeq:NP_126314.1 HSSP:O50082
ProteinModelPortal:Q9V106 EnsemblBacteria:EBPYRT00000003778
GeneID:1495530 KEGG:pab:PAB1947 OMA:ENTFDRV ProtClustDB:CLSK541567
Uniprot:Q9V106
Length = 311
Score = 123 (48.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 55/192 (28%), Positives = 86/192 (44%)
Query: 42 IRLKTGNEADLEEIEA--ELKCKLEKVVWLSG--FYSLPPDIKIATSMAYKQGKIYGIDA 97
IR+ T + +L+EI+A E K +LE + W G FY D+ + Y G I +A
Sbjct: 39 IRINT-LKGNLKEIKALLEEKFELEPIPWTKGEGFYIKSYDVNYGQLIEYSLGLIIPQEA 97
Query: 98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHR-------LAA 150
+S L+ + +LD+ AAPG+K + + + G + D R R L
Sbjct: 98 SSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANLTR 157
Query: 151 CRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSV-LQEKDDTF-REWT-SRIP 207
L+ K + D F TF R+LLD C+SV + K+ F R W+ ++
Sbjct: 158 AGVLIAKVTVKDGA-YFARYENTFD----RVLLD-APCSSVGMIRKNFKFARTWSIGKVY 211
Query: 208 WKER--KRAVKA 217
+ R KR + A
Sbjct: 212 YHSRLQKRLILA 223
>UNIPROTKB|Q96CB9 [details] [associations]
symbol:NSUN4 "5-methylcytosine rRNA methyltransferase
NSUN4" species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] [GO:0005762 "mitochondrial large ribosomal subunit"
evidence=IDA] PROSITE:PS01153 Pfam:PF01189 GO:GO:0005739
EMBL:CH471059 GO:GO:0005762 GO:GO:0008168 EMBL:AL122001 PDB:4FP9
PDB:4FZV PDBsum:4FP9 PDBsum:4FZV eggNOG:COG0144 InterPro:IPR001678
InterPro:IPR023267 PRINTS:PR02008 HOGENOM:HOG000017426
HOVERGEN:HBG106892 CTD:387338 OMA:EPKFPAT OrthoDB:EOG42V8GP
EMBL:AK021577 EMBL:AK057420 EMBL:AK291741 EMBL:AK295003
EMBL:BC014441 EMBL:BC016907 IPI:IPI00303944 IPI:IPI00847475
IPI:IPI00847563 IPI:IPI01012870 RefSeq:NP_001243056.1
RefSeq:NP_001243057.1 RefSeq:NP_950245.2 UniGene:Hs.163424
ProteinModelPortal:Q96CB9 SMR:Q96CB9 DIP:DIP-58104N IntAct:Q96CB9
MINT:MINT-1474456 STRING:Q96CB9 PhosphoSite:Q96CB9 DMDM:152125805
PaxDb:Q96CB9 PRIDE:Q96CB9 Ensembl:ENST00000474844
Ensembl:ENST00000536062 GeneID:387338 KEGG:hsa:387338
UCSC:uc001cpr.1 GeneCards:GC01P046805 HGNC:HGNC:31802 HPA:HPA027958
HPA:HPA028489 neXtProt:NX_Q96CB9 PharmGKB:PA134953046
InParanoid:Q96CB9 PhylomeDB:Q96CB9 GenomeRNAi:387338 NextBio:101304
ArrayExpress:Q96CB9 Bgee:Q96CB9 CleanEx:HS_NSUN4
Genevestigator:Q96CB9 Uniprot:Q96CB9
Length = 384
Score = 108 (43.1 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
Y +DAAS V AL + GD VLDLCAAPG K +L G ++ D++ R+A +
Sbjct: 156 YLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQT-GCCRNLAANDLSPSRIARLQ 214
Query: 153 TLLQKY 158
+L Y
Sbjct: 215 KILHSY 220
Score = 55 (24.4 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 259 EVSSSGYDKVLVDAECTHDGSIKH 282
E+ YD+VLVD CT D H
Sbjct: 243 ELEGDTYDRVLVDVPCTTDRHSLH 266
>TIGR_CMR|CPS_0018 [details] [associations]
symbol:CPS_0018 "sun protein" species:167879 "Colwellia
psychrerythraea 34H" [GO:0000154 "rRNA modification" evidence=ISS]
[GO:0008649 "rRNA methyltransferase activity" evidence=ISS]
InterPro:IPR004573 InterPro:IPR006027 InterPro:IPR018314
Pfam:PF01029 PROSITE:PS01153 Pfam:PF01189 GO:GO:0005737
GO:GO:0006355 GO:GO:0003723 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0031167 GO:GO:0008649 eggNOG:COG0144 InterPro:IPR001678
InterPro:IPR023267 PRINTS:PR02008 Gene3D:1.10.940.10
SUPFAM:SSF48013 HOGENOM:HOG000037300 KO:K03500 OMA:KPPMWLR
TIGRFAMs:TIGR00563 RefSeq:YP_266800.1 ProteinModelPortal:Q48AT0
STRING:Q48AT0 GeneID:3518998 KEGG:cps:CPS_0018 PATRIC:21463471
BioCyc:CPSY167879:GI48-135-MONOMER Uniprot:Q48AT0
Length = 440
Score = 121 (47.7 bits), Expect = 0.00014, P = 0.00014
Identities = 47/154 (30%), Positives = 67/154 (43%)
Query: 49 EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNI 108
+A LEE E E+ +E S L + +A + G + D A+ A L+
Sbjct: 193 QALLEEAEIEI-AHVEPN---SQAIELAKPLDVAKLPGFDDGWVSIQDGAAQQAARLLDC 248
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
D VLD CAAPG K C I++ D S+T +D+ RL L + L +
Sbjct: 249 QPNDIVLDCCAAPGGKTCHIIEQTPDIASMTAIDIEEGRLTRVHENLDRLNL--TANVIT 306
Query: 169 ADGTT---FSLAPL-RLLLD-PGSCNSVLQEKDD 197
AD T +S R+LLD P S V++ D
Sbjct: 307 ADAATQNWWSGEQFDRILLDAPCSGTGVIRRHPD 340
>UNIPROTKB|Q0V8R7 [details] [associations]
symbol:NSUN4 "5-methylcytosine rRNA methyltransferase
NSUN4" species:9913 "Bos taurus" [GO:0005762 "mitochondrial large
ribosomal subunit" evidence=IEA] [GO:0008168 "methyltransferase
activity" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
PROSITE:PS01153 Pfam:PF01189 GO:GO:0005762 GO:GO:0008168
eggNOG:COG0144 InterPro:IPR001678 InterPro:IPR023267 PRINTS:PR02008
GeneTree:ENSGT00660000095341 HOGENOM:HOG000017426
HOVERGEN:HBG106892 EMBL:BT026151 EMBL:DY454541 IPI:IPI00706084
RefSeq:NP_001178310.1 UniGene:Bt.36843 ProteinModelPortal:Q0V8R7
PRIDE:Q0V8R7 Ensembl:ENSBTAT00000021120 GeneID:618779
KEGG:bta:618779 CTD:387338 InParanoid:Q0V8R7 OMA:EPKFPAT
OrthoDB:EOG42V8GP NextBio:20901346 Uniprot:Q0V8R7
Length = 384
Score = 104 (41.7 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 27/70 (38%), Positives = 37/70 (52%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
Y +DAAS V AL + GD VLDLCAAPG K +L G ++ D++ R + +
Sbjct: 156 YLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLALLQT-GCCRNLAANDLSTSRTSRLQ 214
Query: 153 TLLQKYALGD 162
+L Y D
Sbjct: 215 RVLHSYVPQD 224
Score = 55 (24.4 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 259 EVSSSGYDKVLVDAECTHDGSIKH 282
E+ YD+VLVD CT D H
Sbjct: 243 ELEGDTYDRVLVDVPCTTDRHSLH 266
>UNIPROTKB|Q96P11 [details] [associations]
symbol:NSUN5 "Putative methyltransferase NSUN5"
species:9606 "Homo sapiens" [GO:0008168 "methyltransferase
activity" evidence=IEA] PROSITE:PS01153 Pfam:PF01189 GO:GO:0008168
EMBL:CH471200 EMBL:AC073841 KO:K15264 eggNOG:COG0144
InterPro:IPR001678 InterPro:IPR023267 PRINTS:PR02008 EMBL:AF420249
EMBL:AF412028 EMBL:AK001129 EMBL:AK125667 EMBL:AK126375
EMBL:AK298221 EMBL:BC008084 IPI:IPI00101659 IPI:IPI00164154
IPI:IPI00807684 IPI:IPI00902543 IPI:IPI00910694
RefSeq:NP_001161819.1 RefSeq:NP_060514.1 RefSeq:NP_683759.1
UniGene:Hs.647060 PDB:2B9E PDBsum:2B9E ProteinModelPortal:Q96P11
SMR:Q96P11 STRING:Q96P11 DMDM:118573085 PaxDb:Q96P11 PRIDE:Q96P11
DNASU:55695 Ensembl:ENST00000252594 Ensembl:ENST00000310326
Ensembl:ENST00000428206 Ensembl:ENST00000438747
Ensembl:ENST00000570494 Ensembl:ENST00000573847
Ensembl:ENST00000577167 GeneID:55695 KEGG:hsa:55695 UCSC:uc003txv.3
UCSC:uc003txw.3 CTD:55695 GeneCards:GC07M072716 HGNC:HGNC:16385
HPA:HPA020536 neXtProt:NX_Q96P11 PharmGKB:PA134993779
HOGENOM:HOG000203203 HOVERGEN:HBG062278 OMA:TLKTCSD
EvolutionaryTrace:Q96P11 GenomeRNAi:55695 NextBio:60515
ArrayExpress:Q96P11 Bgee:Q96P11 CleanEx:HS_NSUN5
Genevestigator:Q96P11 GermOnline:ENSG00000130305 Uniprot:Q96P11
Length = 429
Score = 118 (46.6 bits), Expect = 0.00029, P = 0.00029
Identities = 52/192 (27%), Positives = 80/192 (41%)
Query: 8 EISKLPLPEAFLD-FLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCK---L 63
E+ P P + L F++ N L D R G + L+++ A LK K L
Sbjct: 123 EVGSRPGPASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRA-LKGKHFLL 181
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
+ + + P + Y+ G + D AS L+ G HV+D CAAPG
Sbjct: 182 DPL--MPELLVFPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGN 239
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR--- 180
K + ++ + G + D+ RLA+ TLL + + C L D S + R
Sbjct: 240 KTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDPRYHE 298
Query: 181 ---LLLDPGSCN 189
+LLDP SC+
Sbjct: 299 VHYILLDP-SCS 309
>MGI|MGI:1919431 [details] [associations]
symbol:Nsun4 "NOL1/NOP2/Sun domain family, member 4"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005762 "mitochondrial large
ribosomal subunit" evidence=ISO] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008168 "methyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0032259 "methylation"
evidence=IEA] PROSITE:PS01153 Pfam:PF01189 MGI:MGI:1919431
GO:GO:0005762 GO:GO:0008168 EMBL:AL627105 eggNOG:COG0144
InterPro:IPR001678 InterPro:IPR023267 PRINTS:PR02008
GeneTree:ENSGT00660000095341 HOGENOM:HOG000017426
HOVERGEN:HBG106892 CTD:387338 OMA:EPKFPAT OrthoDB:EOG42V8GP
EMBL:AK009285 EMBL:AK012994 EMBL:BC024628 IPI:IPI00110238
IPI:IPI00112095 RefSeq:NP_082418.1 UniGene:Mm.282560
ProteinModelPortal:Q9CZ57 SMR:Q9CZ57 PhosphoSite:Q9CZ57
PRIDE:Q9CZ57 Ensembl:ENSMUST00000030474 Ensembl:ENSMUST00000030475
GeneID:72181 KEGG:mmu:72181 UCSC:uc008ufu.2 UCSC:uc012djh.1
InParanoid:Q9CZ57 NextBio:335641 Bgee:Q9CZ57 CleanEx:MM_NSUN4
Genevestigator:Q9CZ57 Uniprot:Q9CZ57
Length = 381
Score = 102 (41.0 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
Y +DAAS V AL + GD VLDLCAAPG K +L G ++ D++ R +
Sbjct: 153 YLMDAASLLPVLALGLQHGDTVLDLCAAPGGKTLALLQT-GCCRNLAANDLSTSRTGRLQ 211
Query: 153 TLLQKYALGD 162
+L Y D
Sbjct: 212 KVLHSYVPQD 221
Score = 55 (24.4 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 259 EVSSSGYDKVLVDAECTHDGSIKH 282
E+ YD+VLVD CT D H
Sbjct: 240 ELEGDTYDRVLVDVPCTTDRHSLH 263
>TAIR|locus:2009170 [details] [associations]
symbol:AT1G06560 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] InterPro:IPR002478
InterPro:IPR018314 Pfam:PF01472 PROSITE:PS01153 PROSITE:PS50890
SMART:SM00359 Pfam:PF01189 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0003723 GO:GO:0008168 GO:GO:0032259 InterPro:IPR015947
SUPFAM:SSF88697 eggNOG:COG0144 InterPro:IPR001678
InterPro:IPR023267 PRINTS:PR02008 HOGENOM:HOG000224258 OMA:DTEGEPP
HSSP:O50082 EMBL:BT006450 EMBL:AK227718 IPI:IPI00527095
RefSeq:NP_172143.3 UniGene:At.48158 UniGene:At.71039
ProteinModelPortal:Q84MA1 SMR:Q84MA1 STRING:Q84MA1 PaxDb:Q84MA1
PRIDE:Q84MA1 EnsemblPlants:AT1G06560.1 GeneID:837167
KEGG:ath:AT1G06560 TAIR:At1g06560 InParanoid:Q84MA1
PhylomeDB:Q84MA1 ProtClustDB:CLSN2680685 Genevestigator:Q84MA1
Uniprot:Q84MA1
Length = 599
Score = 119 (46.9 bits), Expect = 0.00036, P = 0.00036
Identities = 54/235 (22%), Positives = 102/235 (43%)
Query: 89 QGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRL 148
+G+I+ + S AL+ G+ +LD+CAAPG K I ++ D G + D + +++
Sbjct: 275 EGEIFLQNLPSIIVAHALDPQKGERILDMCAAPGGKTTAIAILMNDEGEIVAADRSHNKV 334
Query: 149 AACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN-SVLQEKDDTFREWTSR-- 205
+ L + +G C TT L L+ + P + N S + D TS
Sbjct: 335 LVVQNLSAE--MGFTCI------TTCKLDALKSVCLPTTLNESTILINGDNSSSMTSHSE 386
Query: 206 IPWKERKRAVKARENAASKAIVRSEHPEL---------IFYGRRSGIV----GLTKEEIY 252
+ E +V +R + A K+ +++ E + + G + G T+ +
Sbjct: 387 LSSNEEMTSVTSRRSEADKSCEKNDSTEQPNGGDNVSQAYIRKNKGRLKNGRGRTQCQGG 446
Query: 253 QSVCNSEVSSSGYDKVLVDAECTHDG-------SIKHIQKFENWGWTTLQRRVLD 300
++ + + +D+VL+DA C+ G ++ + N GW QR++LD
Sbjct: 447 RAGKSQGFPPNSFDRVLLDAPCSALGLRPRLFAGLETVVSLRNHGW--YQRKMLD 499
>UNIPROTKB|Q0BWV2 [details] [associations]
symbol:HNE_3368 "Putative ribosomal RNA small subunit
methyltransferase B" species:228405 "Hyphomonas neptunium ATCC
15444" [GO:0000154 "rRNA modification" evidence=ISS] [GO:0016434
"rRNA (cytosine) methyltransferase activity" evidence=ISS]
InterPro:IPR006027 Pfam:PF01029 Pfam:PF01189 GO:GO:0006355
GO:GO:0003723 EMBL:CP000158 GenomeReviews:CP000158_GR
eggNOG:COG0144 InterPro:IPR001678 InterPro:IPR023267 PRINTS:PR02008
Gene3D:1.10.940.10 SUPFAM:SSF48013 KO:K03500 HOGENOM:HOG000037302
RefSeq:YP_762041.1 ProteinModelPortal:Q0BWV2 STRING:Q0BWV2
GeneID:4290149 KEGG:hne:HNE_3368 PATRIC:32219615 OMA:VPDHSAV
ProtClustDB:CLSK2532062 BioCyc:HNEP228405:GI69-3370-MONOMER
GO:GO:0016434 Uniprot:Q0BWV2
Length = 423
Score = 117 (46.2 bits), Expect = 0.00036, P = 0.00036
Identities = 43/150 (28%), Positives = 67/150 (44%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ T Y G + DAA+ L+ G+ +LDLCAAPG K L + VT
Sbjct: 205 VETLPGYAAGDWWVQDAAARIPAQLLSPQTGERILDLCAAPGGKT---LQLAAAGADVTA 261
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL--RLLLD-PGSCNSVLQEKDD 197
+D +R RL + L + L + +ADG ++ L ++LLD P S L+ +
Sbjct: 262 LDRSRPRLERLKENLARTGL--HAEVIIADGEAWAPPALFPKILLDAPCSALGTLRRHPE 319
Query: 198 TFREWTSRIPWKERKRAVKARENAASKAIV 227
+ W R V+AR AA+ ++
Sbjct: 320 S--AWIKTEDDVARFPGVQARLLAAAAGML 347
>DICTYBASE|DDB_G0281685 [details] [associations]
symbol:nol1 "NOL1/NOP2/Sun family protein"
species:44689 "Dictyostelium discoideum" [GO:0032259 "methylation"
evidence=IEA] [GO:0008757 "S-adenosylmethionine-dependent
methyltransferase activity" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] InterPro:IPR011023 InterPro:IPR023273 PRINTS:PR02012
dictyBase:DDB_G0281685 Pfam:PF01189 GenomeReviews:CM000152_GR
GO:GO:0003723 EMBL:AAFI02000042 GO:GO:0032259 GO:GO:0006364
GO:GO:0008757 eggNOG:COG0144 InterPro:IPR001678 InterPro:IPR023267
PRINTS:PR02008 KO:K14835 TIGRFAMs:TIGR00446 RefSeq:XP_640577.1
ProteinModelPortal:Q54TL4 STRING:Q54TL4 EnsemblProtists:DDB0237575
GeneID:8623185 KEGG:ddi:DDB_G0281685 InParanoid:Q54TL4 OMA:IEYLAGH
ProtClustDB:CLSZ2846781 Uniprot:Q54TL4
Length = 647
Score = 109 (43.4 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 46/178 (25%), Positives = 74/178 (41%)
Query: 2 LCTLDGEISKLPLPEAFLDFLKENGLDPSVYSAADST--PRYIRLKT--GNEADLEEIEA 57
+CT G S+ L E FL N + + A+ T P IR T DL E
Sbjct: 249 ICTYFG-YSQW-LAEVFLKIF--NASEALEFFEANETHRPLTIRANTLKVRRKDLAEALI 304
Query: 58 ELKCKLEKVVWLS-GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLD 116
LE + W G + I + Y G+ A+S V AL + VLD
Sbjct: 305 ARGVHLEPIKWSQVGLTIYDTQVAIGATPEYLAGQYIQQSASSFLPVLALAPQPNERVLD 364
Query: 117 LCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174
+CA+PG K I ++ ++G++ DV + R+ + + + + + C + DG +
Sbjct: 365 MCASPGGKTTYIAAMMKNTGTLVANDVNKDRIKSLVANIHRLGVKN-CMVSNLDGRQY 421
Score = 53 (23.7 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 263 SGYDKVLVDAECTHDGSI 280
SG+D+VLVDA C G I
Sbjct: 426 SGFDRVLVDAPCVGLGVI 443
>ZFIN|ZDB-GENE-041212-77 [details] [associations]
symbol:nsun4 "NOL1/NOP2/Sun domain family, member 4"
species:7955 "Danio rerio" [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] Pfam:PF01189
ZFIN:ZDB-GENE-041212-77 InterPro:IPR001678 InterPro:IPR023267
PRINTS:PR02008 HOVERGEN:HBG106892 CTD:387338 EMBL:BC086725
IPI:IPI00495141 RefSeq:NP_001008649.1 UniGene:Dr.5991
ProteinModelPortal:Q5PRB6 GeneID:494106 KEGG:dre:494106
InParanoid:Q5PRB6 NextBio:20865614 ArrayExpress:Q5PRB6
Uniprot:Q5PRB6
Length = 327
Score = 107 (42.7 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 47/154 (30%), Positives = 68/154 (44%)
Query: 7 GEISKLPLPEAFLDFLKENGLDPSVY-SAADSTPRYIRLKTGNEADLE-EIEAELKCKLE 64
GEI+ L E DF+ + V+ S+ D T + A L+ I ++KC +
Sbjct: 19 GEITDLEA-EGCRDFITIDCSRNEVHKSSQDPTTPHNDSSDVESAPLQTSITPDIKCLVF 77
Query: 65 KVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAK 124
+S F PD + + Y Y +DAAS V AL++ G VLDLCAAPG K
Sbjct: 78 PRGDISRFKPARPDS--SGILGY-----YLLDAASVLPVLALDVRPGQTVLDLCAAPGGK 130
Query: 125 LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
+L + D++ R R +LQ Y
Sbjct: 131 TLALLQA-HSVNHLWANDLSVSRTGRLRKILQSY 163
Score = 46 (21.3 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 265 YDKVLVDAECTHD 277
+D+VLVD CT D
Sbjct: 192 FDRVLVDVPCTTD 204
>UNIPROTKB|E1C522 [details] [associations]
symbol:NSUN4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005762 "mitochondrial large ribosomal subunit"
evidence=IEA] Pfam:PF01189 GO:GO:0005762 InterPro:IPR001678
InterPro:IPR023267 PRINTS:PR02008 GeneTree:ENSGT00660000095341
CTD:387338 OMA:EPKFPAT EMBL:AADN02012643 IPI:IPI00594399
RefSeq:XP_422449.2 UniGene:Gga.7668 Ensembl:ENSGALT00000016868
GeneID:424613 KEGG:gga:424613 NextBio:20826927 Uniprot:E1C522
Length = 404
Score = 109 (43.4 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 28/66 (42%), Positives = 35/66 (53%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
Y +DAAS V ALN+ D VLDLCAAPG K+ +L G G + DV+ R
Sbjct: 179 YLMDAASLLPVLALNVQPDDFVLDLCAAPGGKMLALLQT-GACGHLAANDVSISRTKRLY 237
Query: 153 TLLQKY 158
+L Y
Sbjct: 238 HVLNSY 243
Score = 46 (21.3 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 259 EVSSSGYDKVLVDAECTHD 277
E+ + KVLVD CT D
Sbjct: 264 ELQGGTFHKVLVDVPCTTD 282
>UNIPROTKB|F1S3W1 [details] [associations]
symbol:NSUN4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005762 "mitochondrial large ribosomal subunit"
evidence=IEA] Pfam:PF01189 GO:GO:0005762 InterPro:IPR001678
InterPro:IPR023267 PRINTS:PR02008 GeneTree:ENSGT00660000095341
OMA:EPKFPAT EMBL:CU694667 RefSeq:XP_003128070.1 UniGene:Ssc.37517
Ensembl:ENSSSCT00000004317 GeneID:100524686 KEGG:ssc:100524686
Uniprot:F1S3W1
Length = 383
Score = 99 (39.9 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 27/70 (38%), Positives = 35/70 (50%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
Y +DAAS V AL + GD VLDLCAAPG K +L G ++ D++ R
Sbjct: 155 YLMDAASLLPVLALGLQPGDTVLDLCAAPGGKTLAMLQT-GCCRNLAANDLSTSRTGRLL 213
Query: 153 TLLQKYALGD 162
+L Y D
Sbjct: 214 KVLHSYVPQD 223
Score = 55 (24.4 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 259 EVSSSGYDKVLVDAECTHDGSIKH 282
E+ YD+VLVD CT D H
Sbjct: 242 ELEGDTYDRVLVDVPCTTDRHSLH 265
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 313 313 0.00081 116 3 11 22 0.40 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 616 (65 KB)
Total size of DFA: 225 KB (2123 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.92u 0.09s 26.01t Elapsed: 00:00:02
Total cpu time: 25.92u 0.09s 26.01t Elapsed: 00:00:02
Start: Thu May 9 16:07:22 2013 End: Thu May 9 16:07:24 2013