BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021397
(313 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255577546|ref|XP_002529651.1| conserved hypothetical protein [Ricinus communis]
gi|223530877|gb|EEF32738.1| conserved hypothetical protein [Ricinus communis]
Length = 392
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 216/305 (70%), Positives = 261/305 (85%)
Query: 8 EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
EI+KLPLPEAFLDFL+ NGLDPS+Y+A D+TPRYIRLK G+EA++EEI+ E+ C LE+V
Sbjct: 3 EIAKLPLPEAFLDFLEANGLDPSIYTAIDTTPRYIRLKPGSEAEIEEIKTEINCNLERVN 62
Query: 68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
WL+ FYSLP + IA S AY++GKIYGIDAASGAAV ALNIS GDHVLDLCAAPGAKLCM
Sbjct: 63 WLASFYSLPHHVHIANSRAYREGKIYGIDAASGAAVLALNISVGDHVLDLCAAPGAKLCM 122
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS 187
I +++GDSGSVTGVD++R RLAACRT+LQKY LGDRCRLFVADGT FSL P+R + S
Sbjct: 123 ISELLGDSGSVTGVDISRDRLAACRTMLQKYNLGDRCRLFVADGTAFSLLPVREHSNLRS 182
Query: 188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLT 247
C S QEK+DT+R+WTSR P+KERKRA KARE AAS + S++PELIFYG+ SG++GL+
Sbjct: 183 CESASQEKEDTYRKWTSRRPYKERKRASKARERAASALVAESDYPELIFYGQDSGVIGLS 242
Query: 248 KEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSV 307
K E+YQ VC +E+S+ GYDKVLVDAECTHDGSI+HIQKFE+WGW TL +RVL ER+DS+
Sbjct: 243 KSELYQIVCGNELSNCGYDKVLVDAECTHDGSIRHIQKFEHWGWETLYQRVLQAERSDSL 302
Query: 308 TNLQV 312
T+LQ+
Sbjct: 303 TSLQL 307
>gi|359476823|ref|XP_003631893.1| PREDICTED: uncharacterized protein LOC100267747 [Vitis vinifera]
Length = 395
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/306 (70%), Positives = 251/306 (82%), Gaps = 2/306 (0%)
Query: 8 EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGN--EADLEEIEAELKCKLEK 65
E S + LPEAFLDFLKENG+DPS+Y+ ADSTPRYIRLK G+ EA ++++EAE K KLEK
Sbjct: 3 EASAIGLPEAFLDFLKENGVDPSIYTTADSTPRYIRLKPGSISEAQIQQLEAEFKSKLEK 62
Query: 66 VVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKL 125
V WL FYSLPP I IA SMAYK+GKIYGIDAASGAAVSALN+S GDHVLDLCAAPGAKL
Sbjct: 63 VGWLPNFYSLPPQIHIANSMAYKEGKIYGIDAASGAAVSALNVSEGDHVLDLCAAPGAKL 122
Query: 126 CMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDP 185
CM LD+IG+SGSVTGVDVARHRLAACRT++QKYALGDRCRLFVADGTTFSL P+ D
Sbjct: 123 CMTLDLIGNSGSVTGVDVARHRLAACRTMIQKYALGDRCRLFVADGTTFSLIPVMEHSDS 182
Query: 186 GSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVG 245
S + K D F+EWTS+ PWKERK A KARE S+ + + PELIFYG SG++G
Sbjct: 183 KSGEFASKGKVDVFKEWTSKRPWKERKNAKKAREGIGSQLVPGIQDPELIFYGWHSGVIG 242
Query: 246 LTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTD 305
L++ E+Y+ C+SEV GYDKVLVDAECTHDGSI+HIQKF++WGW TL+RRVLD ERTD
Sbjct: 243 LSRTELYKIACDSEVLKCGYDKVLVDAECTHDGSIRHIQKFDHWGWETLERRVLDAERTD 302
Query: 306 SVTNLQ 311
S+T LQ
Sbjct: 303 SLTVLQ 308
>gi|363807612|ref|NP_001242667.1| uncharacterized protein LOC100788419 [Glycine max]
gi|255642235|gb|ACU21382.1| unknown [Glycine max]
Length = 392
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 209/304 (68%), Positives = 253/304 (83%), Gaps = 3/304 (0%)
Query: 10 SKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWL 69
+K PLP+AFL FL+ NGLDPS+Y+A DSTPRYIRLK G E+ +EE+EAE+KCKLEK+ WL
Sbjct: 7 AKAPLPDAFLQFLETNGLDPSIYTAIDSTPRYIRLKPGFESCIEEVEAEVKCKLEKLEWL 66
Query: 70 SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
GFYSLPP ++IA S AY++GKIYGIDAASGAAV ALNIS GDHVLDLCAAPGAKLCMIL
Sbjct: 67 PGFYSLPPHVQIAGSRAYREGKIYGIDAASGAAVMALNISPGDHVLDLCAAPGAKLCMIL 126
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN 189
D++GDSGSV GVDVARHRLAACRT+LQKY +G RCRLFVADGT FS+ P D SC
Sbjct: 127 DLLGDSGSVAGVDVARHRLAACRTMLQKYMIGGRCRLFVADGTAFSVIPSGFCSDCKSCE 186
Query: 190 SVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKE 249
S L+ + D F+EWTSR PWKERK KA ++ ++ + RS+ PELI+YG+ SG+VGLTK
Sbjct: 187 SGLEGRVDVFKEWTSRRPWKERK---KANKSGTAQLVSRSQPPELIYYGQHSGVVGLTKG 243
Query: 250 EIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSVTN 309
E+Y+++ ++E+++ GYDKVLVDAECTHDGS+KHIQKFE+WGW TLQRRVLD ERTD +
Sbjct: 244 ELYRTLSDNEIANHGYDKVLVDAECTHDGSVKHIQKFEDWGWGTLQRRVLDAERTDDLHT 303
Query: 310 LQVT 313
LQ+
Sbjct: 304 LQLN 307
>gi|224071335|ref|XP_002303410.1| predicted protein [Populus trichocarpa]
gi|222840842|gb|EEE78389.1| predicted protein [Populus trichocarpa]
Length = 394
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/308 (74%), Positives = 268/308 (87%)
Query: 5 LDGEISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLE 64
++ E SKLPLP+AFLDFL+ NG+DP +Y+A +STPRYIRLK G+EA LEEIEAE+KC+L+
Sbjct: 1 MEEETSKLPLPDAFLDFLQTNGIDPLIYTAIESTPRYIRLKPGSEAYLEEIEAEIKCRLQ 60
Query: 65 KVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAK 124
K+ WL GFYSLPP I+IA S YK+GKIYGIDAASGAAV AL+IS GDHVLDLC APGAK
Sbjct: 61 KLNWLPGFYSLPPHIQIANSKPYKEGKIYGIDAASGAAVLALDISVGDHVLDLCCAPGAK 120
Query: 125 LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD 184
LCMI D++GDSGSVTGVDVARHRLAACRT+LQKY LGD CRLFVADGTTFSL P+R LD
Sbjct: 121 LCMISDLLGDSGSVTGVDVARHRLAACRTMLQKYVLGDACRLFVADGTTFSLMPVRDHLD 180
Query: 185 PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIV 244
SC L+EK DTFREWTSR PWKERKRA +ARENAAS+ + ++HPELIFYG+ SG+V
Sbjct: 181 SISCEFALEEKKDTFREWTSRRPWKERKRAARARENAASRLVSETDHPELIFYGKASGVV 240
Query: 245 GLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERT 304
GL+K+E+YQ+V +SEVSSSGYDKVLVDAECTHDGSI+HIQKFE+WGW TL RVL+ ER+
Sbjct: 241 GLSKDELYQTVSSSEVSSSGYDKVLVDAECTHDGSIRHIQKFEHWGWETLNGRVLNAERS 300
Query: 305 DSVTNLQV 312
D++T LQ+
Sbjct: 301 DNLTTLQL 308
>gi|449434146|ref|XP_004134857.1| PREDICTED: uncharacterized protein LOC101221513 [Cucumis sativus]
Length = 401
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 209/305 (68%), Positives = 249/305 (81%)
Query: 8 EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
E S PLP AFLDFLKENGLDPS+YSA DSTPRY+RLK G +AD+EEIE E+KCKLEKV
Sbjct: 3 EPSTSPLPAAFLDFLKENGLDPSIYSATDSTPRYVRLKPGYKADVEEIEDEIKCKLEKVS 62
Query: 68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
WL GFYSLPPD++IA S AYK GKIYGIDAASGAAV+AL+I G+HVLDLCAAPGAKLCM
Sbjct: 63 WLPGFYSLPPDVQIAGSHAYKTGKIYGIDAASGAAVTALDILPGNHVLDLCAAPGAKLCM 122
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS 187
I+D++ GSVTGVDV++HRLAACRT+LQKYALGD CRLFVADG TFSL P+ + +
Sbjct: 123 IVDLLDGLGSVTGVDVSQHRLAACRTMLQKYALGDICRLFVADGATFSLTPVNVTSESKF 182
Query: 188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLT 247
S L++ D REWTSR WKERK+ KA++ +++ + + PELIFYG +SG+VG T
Sbjct: 183 GESTLEDSVDRLREWTSRKSWKERKKTAKAKQTVSAELVQSGQDPELIFYGLKSGVVGFT 242
Query: 248 KEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSV 307
K EIY+S +E+ S GYD+VLVDAECTHDGSIKHIQKFE+WGWT+ QRRVLD ERTD++
Sbjct: 243 KSEIYRSPPENELLSYGYDRVLVDAECTHDGSIKHIQKFESWGWTSFQRRVLDAERTDNL 302
Query: 308 TNLQV 312
T LQ+
Sbjct: 303 TVLQL 307
>gi|449491338|ref|XP_004158865.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101221513
[Cucumis sativus]
Length = 400
Score = 436 bits (1120), Expect = e-120, Method: Compositional matrix adjust.
Identities = 210/305 (68%), Positives = 249/305 (81%), Gaps = 1/305 (0%)
Query: 8 EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
E S PLP AFLDFLKENGLDPS+YSA DSTPRY+RLK G +AD+EEIE E+KCKLEKV
Sbjct: 3 EPSTSPLPAAFLDFLKENGLDPSIYSATDSTPRYVRLKPGYKADVEEIEDEIKCKLEKVS 62
Query: 68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
WL GFYSLPPD++IA S AYK GKIYGIDAASGAAV+AL+I G+HVLDLCAAPGAKLCM
Sbjct: 63 WLPGFYSLPPDVQIAGSHAYKTGKIYGIDAASGAAVTALDILPGNHVLDLCAAPGAKLCM 122
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS 187
I+D++ GSVTGVDV++HRLAACRT+LQKYALGD CRLFVADG TFSL P+ + +
Sbjct: 123 IVDLLDGLGSVTGVDVSQHRLAACRTMLQKYALGDICRLFVADGATFSLTPVNVTSESKF 182
Query: 188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLT 247
S L++ D REWTSR WKERK A KA++ +++ + + PELIFYG +SG+VG T
Sbjct: 183 GESTLEDSVDRLREWTSRKSWKERKTA-KAKQTVSAELVQSGQDPELIFYGLKSGVVGFT 241
Query: 248 KEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSV 307
K EIY+S +E+ S GYD+VLVDAECTHDGSIKHIQKFE+WGWT+ QRRVLD ERTD++
Sbjct: 242 KSEIYRSPPENELLSYGYDRVLVDAECTHDGSIKHIQKFESWGWTSFQRRVLDAERTDNL 301
Query: 308 TNLQV 312
T LQ+
Sbjct: 302 TVLQL 306
>gi|388500686|gb|AFK38409.1| unknown [Medicago truncatula]
Length = 389
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/300 (67%), Positives = 244/300 (81%), Gaps = 5/300 (1%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFY 73
LP+AFL+FL+ NG+DPS+Y++ DSTPRYIRLK G E +EE E+E+KCK +K+ WL GFY
Sbjct: 10 LPDAFLNFLESNGIDPSIYTSIDSTPRYIRLKPGFEDYIEEFESEVKCKPQKLDWLPGFY 69
Query: 74 SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG 133
+LPP+I+IA++ AY++GKIYGIDA+SGAAV AL I GDHVLDLCAAPGAKLCM+LD++G
Sbjct: 70 TLPPNIQIASTKAYQEGKIYGIDASSGAAVMALGIEPGDHVLDLCAAPGAKLCMMLDLLG 129
Query: 134 DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQ 193
DSGSVTGVD ARHRLAACRT+LQKY LGDRCRLFVADGTTFS+ PL D SC S L+
Sbjct: 130 DSGSVTGVDAARHRLAACRTMLQKYKLGDRCRLFVADGTTFSVIPLGFCSD--SCESRLE 187
Query: 194 EKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQ 253
E+ D F+EWTSR PWKERKR K + + +S PELI+YG SG++GLTK E+Y+
Sbjct: 188 ERMDVFKEWTSRRPWKERKRTKKC---GTPQVVSKSHPPELIYYGGHSGVIGLTKGELYK 244
Query: 254 SVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSVTNLQVT 313
+ +E++S GYDKVLVDAECTHDGSIKHIQKFE WGW TLQRRVLD ERTD + LQ+
Sbjct: 245 TASKNEIASYGYDKVLVDAECTHDGSIKHIQKFEQWGWITLQRRVLDAERTDDLHALQLN 304
>gi|357518003|ref|XP_003629290.1| Ribosomal RNA small subunit methyltransferase, putative [Medicago
truncatula]
gi|355523312|gb|AET03766.1| Ribosomal RNA small subunit methyltransferase, putative [Medicago
truncatula]
Length = 389
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 202/300 (67%), Positives = 244/300 (81%), Gaps = 5/300 (1%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFY 73
LP+AFL+FL+ NG+DPS+Y++ DSTPRYIRLK G E +EE E+E+KCK +K+ WL GFY
Sbjct: 10 LPDAFLNFLESNGIDPSIYTSIDSTPRYIRLKPGFEDYIEEFESEVKCKPQKLDWLPGFY 69
Query: 74 SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG 133
+LPP+I+IA++ AY++GKIYGIDA+SGAAV AL I GDHVLDLCAAPGAKLCM+LD++G
Sbjct: 70 TLPPNIQIASTKAYQEGKIYGIDASSGAAVMALGIEPGDHVLDLCAAPGAKLCMMLDLLG 129
Query: 134 DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQ 193
DSGSVTGVD ARHRLAACRT+LQKY LGDRCRLFVADGTTFS+ PL D SC S L+
Sbjct: 130 DSGSVTGVDAARHRLAACRTMLQKYKLGDRCRLFVADGTTFSVIPLGFCSD--SCESRLE 187
Query: 194 EKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQ 253
E+ D F+EWTSR PWKERKR K + + +S PELI+YG SG++GLTK E+Y+
Sbjct: 188 ERMDVFKEWTSRRPWKERKRTKKC---GTPQVVSKSHPPELIYYGGHSGVIGLTKGELYK 244
Query: 254 SVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSVTNLQVT 313
+ +E++S GYDKVLVDAECTHDGSIKHIQKFE WGW TLQRRVLD ERTD + LQ+
Sbjct: 245 TASKNEIASYGYDKVLVDAECTHDGSIKHIQKFEQWGWITLQRRVLDAERTDDLHALQLN 304
>gi|388520659|gb|AFK48391.1| unknown [Medicago truncatula]
Length = 311
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 199/298 (66%), Positives = 241/298 (80%), Gaps = 4/298 (1%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFY 73
LP+AFL+FL+ NG+DPS+Y++ DSTPRYIRLK G E +EE E+E+KCK +K+ WL GFY
Sbjct: 10 LPDAFLNFLESNGIDPSIYTSIDSTPRYIRLKPGFEDYIEEFESEVKCKPQKLDWLPGFY 69
Query: 74 SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG 133
+LPP+I+IA++ AY++G+IYGIDA+SGAAV AL I GDHVLDLCAAPGAKLCM+LD++G
Sbjct: 70 TLPPNIQIASTKAYQEGRIYGIDASSGAAVMALGIEPGDHVLDLCAAPGAKLCMMLDLLG 129
Query: 134 DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQ 193
DSGSVTGVD ARHRLAACRT+LQKY LGDRCRLFVADGTTFS+ PL D S S L+
Sbjct: 130 DSGSVTGVDAARHRLAACRTMLQKYKLGDRCRLFVADGTTFSVIPLGFCSD-SSGESRLE 188
Query: 194 EKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQ 253
E+ D F+E TSR PWKERKR K + + +S PELI+YG SG++GLTK E+Y+
Sbjct: 189 ERMDVFKERTSRRPWKERKRTKKC---GTPQVVSKSHPPELIYYGGHSGVIGLTKGELYK 245
Query: 254 SVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSVTNLQ 311
+ +E++S GYDKVLVDAECTHDGSIKHIQKFE WGW TLQRRVLD ERTD + LQ
Sbjct: 246 TASKNEIASYGYDKVLVDAECTHDGSIKHIQKFEQWGWITLQRRVLDAERTDDLHALQ 303
>gi|297735000|emb|CBI17362.3| unnamed protein product [Vitis vinifera]
Length = 369
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/306 (67%), Positives = 237/306 (77%), Gaps = 28/306 (9%)
Query: 8 EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGN--EADLEEIEAELKCKLEK 65
E S + LPEAFLDFLKENG+DPS+Y+ ADSTPRYIRLK G+ EA ++++EAE K KLEK
Sbjct: 3 EASAIGLPEAFLDFLKENGVDPSIYTTADSTPRYIRLKPGSISEAQIQQLEAEFKSKLEK 62
Query: 66 VVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKL 125
V WL FYSLPP I IA SMAYK+GKIYGIDAASGAAVSALN+S GDHVLDLCAAPGAKL
Sbjct: 63 VGWLPNFYSLPPQIHIANSMAYKEGKIYGIDAASGAAVSALNVSEGDHVLDLCAAPGAKL 122
Query: 126 CMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDP 185
CM LD+IG+SGSVTGVDVARHRLAACRT++QKYALGDRCRLFVADGTTFSL P+ D
Sbjct: 123 CMTLDLIGNSGSVTGVDVARHRLAACRTMIQKYALGDRCRLFVADGTTFSLIPVMEHSDS 182
Query: 186 GSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVG 245
S V D F+EWTS+ PWKERK A KARE ++G
Sbjct: 183 KSGGKV-----DVFKEWTSKRPWKERKNAKKAREGI---------------------VIG 216
Query: 246 LTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTD 305
L++ E+Y+ C+SEV GYDKVLVDAECTHDGSI+HIQKF++WGW TL+RRVLD ERTD
Sbjct: 217 LSRTELYKIACDSEVLKCGYDKVLVDAECTHDGSIRHIQKFDHWGWETLERRVLDAERTD 276
Query: 306 SVTNLQ 311
S+T LQ
Sbjct: 277 SLTVLQ 282
>gi|79547453|ref|NP_201419.2| S-adenosyl-L-methionine-dependent methyltransferase
domain-containing protein [Arabidopsis thaliana]
gi|332010788|gb|AED98171.1| S-adenosyl-L-methionine-dependent methyltransferase
domain-containing protein [Arabidopsis thaliana]
Length = 395
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/305 (64%), Positives = 241/305 (79%), Gaps = 9/305 (2%)
Query: 8 EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
E SKL LPE+FL FL+ NGLDPS+Y+ DS PRY+RLK G E EEIE+E+ CKLEKV
Sbjct: 3 ETSKLQLPESFLSFLEANGLDPSIYTHGDSIPRYVRLKPGFEDAFEEIESEINCKLEKVN 62
Query: 68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
WL GFYS+PPD+ IA + AY+QG +YGIDAASGAAVSAL IS GDHVLDLCAAPGAKLCM
Sbjct: 63 WLPGFYSIPPDVHIARTKAYQQGMMYGIDAASGAAVSALGISPGDHVLDLCAAPGAKLCM 122
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS 187
+LD++G G+ TGVDVARHRLAACRT+L KY L +R RLF+ADGTTFS+ P R L
Sbjct: 123 MLDLLGQKGTATGVDVARHRLAACRTMLLKYGLAERSRLFLADGTTFSVPPTRNL----P 178
Query: 188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLT 247
C S + + +DTF++WTSR P+KERK+ KAR+N+ + ++ E+IFYG+ SG++GL
Sbjct: 179 CESCVDDHEDTFKQWTSRRPYKERKQEAKARKNS---VLPQNGQAEIIFYGQGSGVIGLK 235
Query: 248 KEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSV 307
K E+Y+S+ ++ +S GYDKVLVDAECTHDGSIKHIQKFE WGW TL+RRVLD ERTD
Sbjct: 236 KNELYRSLDQNDYASYGYDKVLVDAECTHDGSIKHIQKFEQWGWKTLERRVLDAERTD-- 293
Query: 308 TNLQV 312
TNL+
Sbjct: 294 TNLKA 298
>gi|45773930|gb|AAS76769.1| At5g66180 [Arabidopsis thaliana]
gi|51968870|dbj|BAD43127.1| unnamed protein product [Arabidopsis thaliana]
Length = 395
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/305 (64%), Positives = 241/305 (79%), Gaps = 9/305 (2%)
Query: 8 EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
E SKL LPE+FL FL+ NGLDPS+Y+ DS PRY+RLK G E EEIE+E+ CKLEKV
Sbjct: 3 ETSKLQLPESFLSFLEANGLDPSIYTHGDSIPRYVRLKPGFEDAFEEIESEINCKLEKVN 62
Query: 68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
WL GFYS+PPD+ IA + AY+QG +YGIDAASGAAVSAL IS GDHVLDLCAAPGAKLCM
Sbjct: 63 WLPGFYSIPPDVHIARTKAYQQGMMYGIDAASGAAVSALGISPGDHVLDLCAAPGAKLCM 122
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS 187
+LD++G G+ TGVDVARHRLAACRT+L KY L +R RLF+ADGTTFS+ P R L
Sbjct: 123 MLDLLGQKGTATGVDVARHRLAACRTMLLKYGLAERSRLFLADGTTFSVPPTRNL----P 178
Query: 188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLT 247
C S + + +DTF++WTSR P+KERK+ KAR+N+ + ++ E+IFYG+ SG++GL
Sbjct: 179 CESCVDDHEDTFKQWTSRRPYKERKQEAKARKNS---VLPQNGQAEIIFYGQGSGVIGLK 235
Query: 248 KEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSV 307
K E+Y+S+ ++ +S GYDKVLVDAECTHDGSIKHIQKFE WGW TL+RRVLD ERTD
Sbjct: 236 KNELYRSLDQNDYASYGYDKVLVDAECTHDGSIKHIQKFEQWGWKTLERRVLDAERTD-- 293
Query: 308 TNLQV 312
TNL+
Sbjct: 294 TNLKA 298
>gi|79332665|ref|NP_001032160.1| S-adenosyl-L-methionine-dependent methyltransferase
domain-containing protein [Arabidopsis thaliana]
gi|332010789|gb|AED98172.1| S-adenosyl-L-methionine-dependent methyltransferase
domain-containing protein [Arabidopsis thaliana]
Length = 323
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/305 (64%), Positives = 241/305 (79%), Gaps = 9/305 (2%)
Query: 8 EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
E SKL LPE+FL FL+ NGLDPS+Y+ DS PRY+RLK G E EEIE+E+ CKLEKV
Sbjct: 3 ETSKLQLPESFLSFLEANGLDPSIYTHGDSIPRYVRLKPGFEDAFEEIESEINCKLEKVN 62
Query: 68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
WL GFYS+PPD+ IA + AY+QG +YGIDAASGAAVSAL IS GDHVLDLCAAPGAKLCM
Sbjct: 63 WLPGFYSIPPDVHIARTKAYQQGMMYGIDAASGAAVSALGISPGDHVLDLCAAPGAKLCM 122
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS 187
+LD++G G+ TGVDVARHRLAACRT+L KY L +R RLF+ADGTTFS+ P R L
Sbjct: 123 MLDLLGQKGTATGVDVARHRLAACRTMLLKYGLAERSRLFLADGTTFSVPPTRNL----P 178
Query: 188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLT 247
C S + + +DTF++WTSR P+KERK+ KAR+N+ + ++ E+IFYG+ SG++GL
Sbjct: 179 CESCVDDHEDTFKQWTSRRPYKERKQEAKARKNS---VLPQNGQAEIIFYGQGSGVIGLK 235
Query: 248 KEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSV 307
K E+Y+S+ ++ +S GYDKVLVDAECTHDGSIKHIQKFE WGW TL+RRVLD ERTD
Sbjct: 236 KNELYRSLDQNDYASYGYDKVLVDAECTHDGSIKHIQKFEQWGWKTLERRVLDAERTD-- 293
Query: 308 TNLQV 312
TNL+
Sbjct: 294 TNLKA 298
>gi|297797769|ref|XP_002866769.1| hypothetical protein ARALYDRAFT_496995 [Arabidopsis lyrata subsp.
lyrata]
gi|297312604|gb|EFH43028.1| hypothetical protein ARALYDRAFT_496995 [Arabidopsis lyrata subsp.
lyrata]
Length = 392
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/307 (62%), Positives = 240/307 (78%), Gaps = 11/307 (3%)
Query: 8 EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
E SKL LPE FL FL+ NGLDPS+Y+ +S PRY+RLK G E LEEIE+++ CKL+KV
Sbjct: 3 ETSKLQLPETFLSFLEANGLDPSIYTHGNSIPRYVRLKPGFEDALEEIESQINCKLDKVN 62
Query: 68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
WL GFYS+PP + IA S AY+QG +YGIDAASGAAVSAL IS GDHVLDLCAAPGAKLCM
Sbjct: 63 WLPGFYSIPPHVHIARSKAYQQGTMYGIDAASGAAVSALAISPGDHVLDLCAAPGAKLCM 122
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS 187
+LD++GD G+ TGVDVARHRLAACRT+L KY L +R RLF+ADGTTFS+ P L
Sbjct: 123 MLDLLGDKGTATGVDVARHRLAACRTMLLKYGLAERTRLFLADGTTFSVPPTTNL----- 177
Query: 188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLT 247
+ + +DTF +WTSR P+K+RK+ KAR+N+ + ++ PE+IFYG+ SG++GLT
Sbjct: 178 --PCMDDHEDTFTQWTSRRPYKQRKQEAKARKNS---VLPQNGQPEVIFYGQGSGVIGLT 232
Query: 248 KEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTD-S 306
K+++Y S+ + + GYDKVLVDAECTHDGSIKHIQKFE WGWTTL+RRVLD ERTD +
Sbjct: 233 KKQLYTSLDQDDYAYCGYDKVLVDAECTHDGSIKHIQKFEQWGWTTLERRVLDAERTDRN 292
Query: 307 VTNLQVT 313
++ LQ+
Sbjct: 293 LSALQLN 299
>gi|242080479|ref|XP_002445008.1| hypothetical protein SORBIDRAFT_07g002670 [Sorghum bicolor]
gi|241941358|gb|EES14503.1| hypothetical protein SORBIDRAFT_07g002670 [Sorghum bicolor]
Length = 408
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/299 (62%), Positives = 231/299 (77%), Gaps = 1/299 (0%)
Query: 8 EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
+ + LPLP+AFL+FL ENGLDP+VYS A + PRYIRLK G E+ + EIE+ELKC LEKV
Sbjct: 19 QTASLPLPDAFLEFLSENGLDPAVYSMAATIPRYIRLKPGMESQITEIESELKCVLEKVS 78
Query: 68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
WL GFY++PP+I+IA S AY+QGKIYGIDAASGAA+ AL++ GDHVLDLCAAPGAKLCM
Sbjct: 79 WLPGFYAIPPEIQIAGSKAYQQGKIYGIDAASGAAILALDVRPGDHVLDLCAAPGAKLCM 138
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS 187
+ D +G +GS+TGVDVA+HRLAACRT+LQKY LGDR RLFVADGT FS+ P+ +
Sbjct: 139 LADTLGTTGSLTGVDVAKHRLAACRTMLQKYCLGDRTRLFVADGTLFSILPVNSRMQRME 198
Query: 188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLT 247
+ ++E TF EWTSR WK+R++ KA N + E PELI+YG+ SG+VGL
Sbjct: 199 GSIGVEENGSTFPEWTSRRSWKDRQKTKKANANGPQHLLATLE-PELIYYGKHSGLVGLC 257
Query: 248 KEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDS 306
K +++ ++E +SGYDKVLVDAECTHDGSIKHIQKFE WGW TL RR+LD RT++
Sbjct: 258 KSDVFCPSVDNEACTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKTLDRRILDAGRTEN 316
>gi|226502218|ref|NP_001150625.1| NOL1/NOP2/sun family protein [Zea mays]
gi|195640662|gb|ACG39799.1| NOL1/NOP2/sun family protein [Zea mays]
gi|219884197|gb|ACL52473.1| unknown [Zea mays]
Length = 408
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/297 (62%), Positives = 230/297 (77%), Gaps = 1/297 (0%)
Query: 10 SKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWL 69
+ LPLP AFL+FL ENGLDP+VYS A + PRYIRLK G E+ + EIEAELKC L+KV+WL
Sbjct: 21 ASLPLPAAFLEFLSENGLDPAVYSMAATIPRYIRLKPGMESKIAEIEAELKCALDKVLWL 80
Query: 70 SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
GFY++PP+I+IA S AY+QGKIYGIDAASGAA+ AL++ G+HVLDLCAAPGAKLCM+
Sbjct: 81 PGFYAIPPEIQIAGSKAYQQGKIYGIDAASGAAILALDVRPGNHVLDLCAAPGAKLCMLA 140
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN 189
D +G +GS+TGVDVA+HRLAACRT+LQKY+LGDR RLFVADGT FSL P+ + +
Sbjct: 141 DTLGTTGSLTGVDVAKHRLAACRTMLQKYSLGDRTRLFVADGTLFSLLPVNSRMQRMEGS 200
Query: 190 SVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKE 249
++E F EWTSR WK+R++ KA N + SE PELI+YG+ SG+VG K
Sbjct: 201 IGVEENGSIFPEWTSRRSWKDRQKTRKANANGQQHLLAASE-PELIYYGKHSGLVGQCKS 259
Query: 250 EIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDS 306
+++ + E +SGYDKVLVDAECTHDGSIKHIQKFE WGW +L RRVLD ERT++
Sbjct: 260 DVFCPSVDDEACTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKSLDRRVLDAERTEN 316
>gi|125581864|gb|EAZ22795.1| hypothetical protein OsJ_06471 [Oryza sativa Japonica Group]
Length = 394
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/292 (62%), Positives = 227/292 (77%), Gaps = 1/292 (0%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFY 73
LP AFL+FL+ENGLDP +YS D+ PRYIRLK G E + EI++EL C L KV WL FY
Sbjct: 11 LPPAFLEFLQENGLDPMMYSMVDTIPRYIRLKPGMEPHIPEIQSELTCHLNKVSWLPDFY 70
Query: 74 SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG 133
++PP ++IA+SMAY+QGKIYGIDAASGAAV AL++ G+HVLDLCAAPGAKLCM+ D++G
Sbjct: 71 AIPPQVQIASSMAYQQGKIYGIDAASGAAVLALDVQPGEHVLDLCAAPGAKLCMLADMLG 130
Query: 134 DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQ 193
GS+TGVDVA+HRLAACRT+LQKY+LGDRCRLFVADGT+FS+ P+ L G ++ +
Sbjct: 131 GRGSLTGVDVAKHRLAACRTMLQKYSLGDRCRLFVADGTSFSILPVNSSLGNGEGSTCHK 190
Query: 194 EKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQ 253
+ T EWTS+ WK+R+++ KAR A S + + PELI+YG+ SG+VGL K + +
Sbjct: 191 DNGSTLSEWTSKRSWKDRQKSKKAR-MAGSPHLTSTSEPELIYYGKHSGLVGLRKCDAIR 249
Query: 254 SVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTD 305
+ E +SGYDKVLVDAECTHDGSIKHIQKFE WGW TL RRVLD ERTD
Sbjct: 250 PSADDEAQTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKTLDRRVLDAERTD 301
>gi|125539198|gb|EAY85593.1| hypothetical protein OsI_06967 [Oryza sativa Indica Group]
Length = 394
Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/292 (62%), Positives = 227/292 (77%), Gaps = 1/292 (0%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFY 73
LP AFL+FL+ENGLDP +YS D+ PRYIRLK G E + EI++EL C L KV WL FY
Sbjct: 11 LPPAFLEFLQENGLDPMMYSMVDTIPRYIRLKPGMEPHIPEIQSELTCHLNKVSWLPDFY 70
Query: 74 SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG 133
++PP ++IA+SMAY+QGKIYGIDAASGAAV AL++ G+HVLDLCAAPGAKLCM+ D++G
Sbjct: 71 AIPPQVQIASSMAYQQGKIYGIDAASGAAVLALDVQPGEHVLDLCAAPGAKLCMLADMLG 130
Query: 134 DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQ 193
GS+TGVDVA+HRLAACRT+LQKY+LGDRCRLFVADGT+FS+ P+ L G ++ +
Sbjct: 131 GRGSLTGVDVAKHRLAACRTMLQKYSLGDRCRLFVADGTSFSILPVNSSLGNGEGSTCHK 190
Query: 194 EKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQ 253
+ T EWTS+ WK+R+++ KAR A S + + PELI+YG+ SG+VGL K + +
Sbjct: 191 DNGSTLSEWTSKRSWKDRQKSKKAR-MAGSPHLTSTSEPELIYYGKHSGLVGLRKCDAIR 249
Query: 254 SVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTD 305
+ E +SGYDKVLVDAECTHDGSIKHIQKFE WGW TL RRVLD ERTD
Sbjct: 250 PSADDEAQTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKTLDRRVLDAERTD 301
>gi|115445807|ref|NP_001046683.1| Os02g0320100 [Oryza sativa Japonica Group]
gi|50252730|dbj|BAD28956.1| phosphate/phosphoenolpyruvate translocator-like [Oryza sativa
Japonica Group]
gi|113536214|dbj|BAF08597.1| Os02g0320100 [Oryza sativa Japonica Group]
gi|215737006|dbj|BAG95935.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 330
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/292 (62%), Positives = 227/292 (77%), Gaps = 1/292 (0%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFY 73
LP AFL+FL+ENGLDP +YS D+ PRYIRLK G E + EI++EL C L KV WL FY
Sbjct: 11 LPPAFLEFLQENGLDPMMYSMVDTIPRYIRLKPGMEPHIPEIQSELTCHLNKVSWLPDFY 70
Query: 74 SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG 133
++PP ++IA+SMAY+QGKIYGIDAASGAAV AL++ G+HVLDLCAAPGAKLCM+ D++G
Sbjct: 71 AIPPQVQIASSMAYQQGKIYGIDAASGAAVLALDVQPGEHVLDLCAAPGAKLCMLADMLG 130
Query: 134 DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQ 193
GS+TGVDVA+HRLAACRT+LQKY+LGDRCRLFVADGT+FS+ P+ L G ++ +
Sbjct: 131 GRGSLTGVDVAKHRLAACRTMLQKYSLGDRCRLFVADGTSFSILPVNSSLGNGEGSTCHK 190
Query: 194 EKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQ 253
+ T EWTS+ WK+R+++ KAR A S + + PELI+YG+ SG+VGL K + +
Sbjct: 191 DNGSTLSEWTSKRSWKDRQKSKKAR-MAGSPHLTSTSEPELIYYGKHSGLVGLRKCDAIR 249
Query: 254 SVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTD 305
+ E +SGYDKVLVDAECTHDGSIKHIQKFE WGW TL RRVLD ERTD
Sbjct: 250 PSADDEAQTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKTLDRRVLDAERTD 301
>gi|326498989|dbj|BAK05985.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 425
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/296 (61%), Positives = 227/296 (76%), Gaps = 2/296 (0%)
Query: 10 SKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADL-EEIEAELKCKLEKVVW 68
+ LPLP AFL+FL ENGLDP++YS AD+ PRYIRLK G E+ + EIE ELKC L KV W
Sbjct: 18 ASLPLPAAFLEFLGENGLDPTLYSKADAIPRYIRLKPGTESRVVAEIECELKCDLRKVSW 77
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
L FY++PP+I+IA S AY+QGKIYGIDAASGAA+ AL++ GDHVLDLCAAPGAKLCM+
Sbjct: 78 LPDFYAIPPEIQIAGSKAYQQGKIYGIDAASGAAILALDVQPGDHVLDLCAAPGAKLCML 137
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSC 188
D++G +GS+TGVDVA+HRLAACRT+LQKY+LGDR RLFVADGT+FS+ P+ L
Sbjct: 138 ADMLGSTGSLTGVDVAKHRLAACRTMLQKYSLGDRSRLFVADGTSFSILPMNSNLGSMEA 197
Query: 189 NSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTK 248
+ +++ F EWTS+ WK+R+++ KA+ A S + PELI+YG+ SG+VGL K
Sbjct: 198 SVGIEDTGSIFSEWTSKRSWKDRQKSKKAKA-ADSPHPSSTSEPELIYYGKDSGLVGLQK 256
Query: 249 EEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERT 304
+ N+ +SGYDKVLVDAECTHDGSIKHIQKFE WGW TL RRVL+ ERT
Sbjct: 257 RYVLCPSTNAAACTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKTLDRRVLNVERT 312
>gi|357139575|ref|XP_003571356.1| PREDICTED: uncharacterized protein LOC100835950 [Brachypodium
distachyon]
Length = 407
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/298 (59%), Positives = 231/298 (77%), Gaps = 2/298 (0%)
Query: 10 SKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADL-EEIEAELKCKLEKVVW 68
+ LPLP AFL+FL +NGLDP +YSA+D+ PRYIRLK G E+ + EIE+ELKC+L KV W
Sbjct: 19 ASLPLPAAFLEFLGDNGLDPMLYSASDTIPRYIRLKPGVESRMVSEIESELKCELWKVPW 78
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
L FY++PP+++IA S AY+QGKIYGIDAASGAA+ AL++ GDHVLDLCAAPGAKLCM+
Sbjct: 79 LPNFYAIPPEVQIAGSKAYQQGKIYGIDAASGAAILALDVQPGDHVLDLCAAPGAKLCML 138
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSC 188
D++G++GS+TGVDVA+HRLAACRT+LQKY+LGDR RLFVA+GT FS+ P L
Sbjct: 139 ADMLGNTGSLTGVDVAKHRLAACRTMLQKYSLGDRSRLFVANGTFFSILPSNSSLGSIEE 198
Query: 189 NSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTK 248
++ +++ F EWTS+ WKER+++ KA+ A S + PELI+YG+ SG+VG+ K
Sbjct: 199 STGIKDNGSIFSEWTSKRSWKERQKSKKAKA-AGSPHPPSTSEPELIYYGKDSGLVGVRK 257
Query: 249 EEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDS 306
++ + + +SGYDKVLVDAECTHDGSIKHIQKFE WGW T+ RRVLD +R D+
Sbjct: 258 CDVLCPSADVDACTSGYDKVLVDAECTHDGSIKHIQKFEFWGWETMDRRVLDAQRIDN 315
>gi|79332684|ref|NP_001032161.1| S-adenosyl-L-methionine-dependent methyltransferase
domain-containing protein [Arabidopsis thaliana]
gi|332010790|gb|AED98173.1| S-adenosyl-L-methionine-dependent methyltransferase
domain-containing protein [Arabidopsis thaliana]
Length = 374
Score = 360 bits (925), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 173/271 (63%), Positives = 214/271 (78%), Gaps = 9/271 (3%)
Query: 41 YIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASG 100
++ LK G E EEIE+E+ CKLEKV WL GFYS+PPD+ IA + AY+QG +YGIDAASG
Sbjct: 15 HVMLKPGFEDAFEEIESEINCKLEKVNWLPGFYSIPPDVHIARTKAYQQGMMYGIDAASG 74
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
AAVSAL IS GDHVLDLCAAPGAKLCM+LD++G G+ TGVDVARHRLAACRT+L KY L
Sbjct: 75 AAVSALGISPGDHVLDLCAAPGAKLCMMLDLLGQKGTATGVDVARHRLAACRTMLLKYGL 134
Query: 161 GDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKAREN 220
+R RLF+ADGTTFS+ P R L C S + + +DTF++WTSR P+KERK+ KAR+N
Sbjct: 135 AERSRLFLADGTTFSVPPTRNL----PCESCVDDHEDTFKQWTSRRPYKERKQEAKARKN 190
Query: 221 AASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSI 280
+ + ++ E+IFYG+ SG++GL K E+Y+S+ ++ +S GYDKVLVDAECTHDGSI
Sbjct: 191 S---VLPQNGQAEIIFYGQGSGVIGLKKNELYRSLDQNDYASYGYDKVLVDAECTHDGSI 247
Query: 281 KHIQKFENWGWTTLQRRVLDPERTDSVTNLQ 311
KHIQKFE WGW TL+RRVLD ERTD TNL+
Sbjct: 248 KHIQKFEQWGWKTLERRVLDAERTD--TNLK 276
>gi|218190605|gb|EEC73032.1| hypothetical protein OsI_06971 [Oryza sativa Indica Group]
Length = 350
Score = 321 bits (823), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 151/255 (59%), Positives = 197/255 (77%), Gaps = 1/255 (0%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFY 73
LP AFL+FL+ENGLDP +YS AD+ PRYIRLK G EA + EI++ELKC L+KV WL FY
Sbjct: 11 LPPAFLEFLQENGLDPMMYSMADTIPRYIRLKPGMEAQIPEIQSELKCHLDKVSWLPDFY 70
Query: 74 SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG 133
++PP ++IA+S AY+QGKIYGIDAASGAAV AL++ G+HVLDLCAAPGAKLCM+ D++G
Sbjct: 71 AIPPQVQIASSKAYQQGKIYGIDAASGAAVLALDVQPGEHVLDLCAAPGAKLCMLADMLG 130
Query: 134 DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQ 193
GS+TGVDVA+HRLAACRT+LQKY+LGD CRLFVADGT+FS+ P+ L G ++ L+
Sbjct: 131 GRGSLTGVDVAKHRLAACRTMLQKYSLGDCCRLFVADGTSFSILPVNSSLGSGEGSTCLK 190
Query: 194 EKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQ 253
+ T EWTS+ WK+R+++ KAR A S + + PELI+YG+ SG+VGL K + +
Sbjct: 191 DNGSTLSEWTSKRSWKDRQKSKKAR-TAGSPHLTSTSEPELIYYGKHSGLVGLRKCDALR 249
Query: 254 SVCNSEVSSSGYDKV 268
+ E +SGYDK+
Sbjct: 250 PSADDEAQTSGYDKL 264
>gi|168024016|ref|XP_001764533.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162684397|gb|EDQ70800.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 399
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 162/306 (52%), Positives = 214/306 (69%), Gaps = 9/306 (2%)
Query: 11 KLP--LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVW 68
+LP LP AFL FLK+NGLD S+Y+AA + PRYIR++ D+ E+E EL KL + W
Sbjct: 4 QLPSTLPPAFLTFLKQNGLDASIYAAAATLPRYIRVQPRTSLDIPELEEELGLKLSPLAW 63
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
L F+SLPP +IA++ AY+ GK+YG+DAASGAAV+AL IS+GDHVLDLCAAPGAKLCM+
Sbjct: 64 LPNFFSLPPQAQIASTQAYQLGKLYGMDAASGAAVAALEISSGDHVLDLCAAPGAKLCMM 123
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSC 188
+ +GDSGS+T VD+AR RLAACRT+L KY LG R RL++ DGTTFSL P L+ G
Sbjct: 124 AESLGDSGSLTAVDIARPRLAACRTMLLKYGLGRRTRLYLGDGTTFSLLP----LNGGFH 179
Query: 189 NSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTK 248
+ E+ + EW S +E++ A +A+ PEL FYG +G+VG+
Sbjct: 180 KNPRMERKTVYGEWRSGRTRQEKRSAKRAKYLGIPLQTGVDGMPELFFYGIEAGVVGMKV 239
Query: 249 EEIYQSVC--NSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDS 306
++ + VC ++E S SGYDKVLVDAECTHDGS++HI K+ WGW T +RR L+ ER S
Sbjct: 240 ADVAR-VCQDSNEASFSGYDKVLVDAECTHDGSLRHIVKYNEWGWDTFERRFLNEERIAS 298
Query: 307 VTNLQV 312
+T+LQ+
Sbjct: 299 ITSLQL 304
>gi|302766075|ref|XP_002966458.1| hypothetical protein SELMODRAFT_227613 [Selaginella moellendorffii]
gi|300165878|gb|EFJ32485.1| hypothetical protein SELMODRAFT_227613 [Selaginella moellendorffii]
Length = 423
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 157/312 (50%), Positives = 201/312 (64%), Gaps = 19/312 (6%)
Query: 12 LPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSG 71
LPLP F+DFL +DP VY AA + PRY R+K E+ EL K+E V WL G
Sbjct: 30 LPLPPEFVDFLLGQNVDPRVYLAAQTLPRYFRVKPSATNAAGELAKELGIKVEPVSWLPG 89
Query: 72 FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDI 131
F+ +A+S AYK GKIYG+DAASGAAV+AL+I +GDHVLD+CAAPGAKLCM+ ++
Sbjct: 90 FFQCSSQASLASSSAYKSGKIYGMDAASGAAVAALDIQSGDHVLDVCAAPGAKLCMMAEV 149
Query: 132 IG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNS 190
+G +G++TGVD++RHRLAACRT+LQKY LG R RLF+ADGTTFS+ P++ P S S
Sbjct: 150 LGVGAGTLTGVDISRHRLAACRTMLQKYELGSRARLFLADGTTFSILPVKEA--PQSNAS 207
Query: 191 VLQE----------KDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRR 240
VL+ KD +W R P + KR + + A SK ++ PEL +YG
Sbjct: 208 VLERQSHQSCSYLLKDGLLADW--RPP--KSKRGKRDDQRAVSKG--QANGPELFYYGCE 261
Query: 241 SGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLD 300
SGIVG + GYDKVLVDAECTHDGS+KHI KFE WGW T ++R +
Sbjct: 262 SGIVGREMRSVLAQGTADAALVDGYDKVLVDAECTHDGSLKHICKFEQWGWETFEKRFFN 321
Query: 301 PERTDSVTNLQV 312
ER ++TNLQ+
Sbjct: 322 SERISTITNLQL 333
>gi|302800612|ref|XP_002982063.1| hypothetical protein SELMODRAFT_228812 [Selaginella moellendorffii]
gi|300150079|gb|EFJ16731.1| hypothetical protein SELMODRAFT_228812 [Selaginella moellendorffii]
Length = 423
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 156/312 (50%), Positives = 201/312 (64%), Gaps = 19/312 (6%)
Query: 12 LPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSG 71
LPLP F+DFL +DP VY AA + PRY R+K E+ EL K+E V WL G
Sbjct: 30 LPLPPEFVDFLLGQNVDPRVYLAAQTLPRYFRVKPSATNAAGELAKELGIKVEPVSWLPG 89
Query: 72 FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDI 131
F+ +A+S AYK GKIYG+DAASGAAV+AL+I +GDHVLD+CAAPGAKLCM+ ++
Sbjct: 90 FFRCSSQASLASSSAYKSGKIYGMDAASGAAVAALDIQSGDHVLDVCAAPGAKLCMMAEV 149
Query: 132 IG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNS 190
+G +G++TGVD++RHRLAACRT+LQKY LG+R RLF+ADG TFS+ P++ P S S
Sbjct: 150 LGVGAGTLTGVDISRHRLAACRTMLQKYELGNRARLFLADGATFSILPVKEA--PQSNAS 207
Query: 191 VLQE----------KDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRR 240
VL+ KD +W R P + KR + + A SK ++ PEL +YG
Sbjct: 208 VLERQSHQSCSYLLKDGLLADW--RPP--KSKREKRDDQRAVSKE--QANGPELFYYGCD 261
Query: 241 SGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLD 300
SGIVG + GYDKVLVDAECTHDGS+KHI KFE WGW T ++R +
Sbjct: 262 SGIVGREMRSVLAQGTADAALVDGYDKVLVDAECTHDGSLKHICKFEQWGWETFEKRFFN 321
Query: 301 PERTDSVTNLQV 312
ER ++TNLQ+
Sbjct: 322 SERISTITNLQL 333
>gi|10177133|dbj|BAB10423.1| unnamed protein product [Arabidopsis thaliana]
Length = 325
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 141/305 (46%), Positives = 180/305 (59%), Gaps = 71/305 (23%)
Query: 8 EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
E SKL LPE+FL FL+ NGLDPS+Y+ DS PRY+RLK G E EEIE+E+ CKLEKV
Sbjct: 3 ETSKLQLPESFLSFLEANGLDPSIYTHGDSIPRYVRLKPGFEDAFEEIESEINCKLEKVN 62
Query: 68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
WL GFYS+PPD+ IA + AY+QG +YGIDAAS
Sbjct: 63 WLPGFYSIPPDVHIARTKAYQQGMMYGIDAAS---------------------------- 94
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS 187
G + S G+ H L C A G+ C
Sbjct: 95 -----GAAVSALGISPGDHVLDLCA------APGESC----------------------- 120
Query: 188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLT 247
+ + +DTF++WTSR P+KERK+ KAR+N+ + ++ E+IFYG+ SG++GL
Sbjct: 121 ----VDDHEDTFKQWTSRRPYKERKQEAKARKNSV---LPQNGQAEIIFYGQGSGVIGLK 173
Query: 248 KEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSV 307
K E+Y+S+ ++ +S GYDKVLVDAECTHDGSIKHIQKFE WGW TL+RRVLD ERTD
Sbjct: 174 KNELYRSLDQNDYASYGYDKVLVDAECTHDGSIKHIQKFEQWGWKTLERRVLDAERTD-- 231
Query: 308 TNLQV 312
TNL+
Sbjct: 232 TNLKA 236
>gi|46200514|gb|AAL73534.2|AF466200_13 putative protein [Sorghum bicolor]
Length = 297
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/216 (56%), Positives = 152/216 (70%), Gaps = 21/216 (9%)
Query: 91 KIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAA 150
+IYGIDAASGAA+ AL++ GDHVLDLCAAPGAKLCM+ D +G +GS+TGVDVA+HRLAA
Sbjct: 11 QIYGIDAASGAAILALDVRPGDHVLDLCAAPGAKLCMLADTLGTTGSLTGVDVAKHRLAA 70
Query: 151 CRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKE 210
CRT+LQKY LGDR RLFVADGT FS+ P+ + + ++E TF EWTSR WK+
Sbjct: 71 CRTMLQKYCLGDRTRLFVADGTLFSILPVNSRMQRMEGSIGVEENGSTFPEWTSRRSWKD 130
Query: 211 RKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLV 270
R++ KA N G+VGL K +++ ++E +SGYDKVLV
Sbjct: 131 RQKTKKANAN---------------------GLVGLCKSDVFCPSVDNEACTSGYDKVLV 169
Query: 271 DAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDS 306
DAECTHDGSIKHIQKFE WGW TL RR+LD RT++
Sbjct: 170 DAECTHDGSIKHIQKFEFWGWKTLDRRILDAGRTEN 205
>gi|326429969|gb|EGD75539.1| hypothetical protein PTSG_06609 [Salpingoeca sp. ATCC 50818]
Length = 448
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 175/326 (53%), Gaps = 34/326 (10%)
Query: 14 LPEAFLDFLKENGLDPSVYSAA--DSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSG 71
LP AF FL++N +D Y+AA RYIRL + EE+ AE + V W G
Sbjct: 29 LPAAFRAFLRDNDIDEDAYTAAFEHLDLRYIRLSKRVQLKEEELGAEFP-GIRPVPWCPG 87
Query: 72 FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDI 131
FY++P K+A+S Y G +YG+D +SGAAV+AL I GDH LDLC APGAKLCM+ D+
Sbjct: 88 FYAMPHTAKLASSALYTNGHVYGMDVSSGAAVTALQIQPGDHCLDLCCAPGAKLCMMSDL 147
Query: 132 IGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL---APLRLLLDPGSC 188
G+ GSVTGVDV+R RLAACRTLL KY D RL++ADG +FS AP + P SC
Sbjct: 148 SGEEGSVTGVDVSRERLAACRTLLLKYK-HDNVRLYLADGRSFSTSAPAPPQ----PCSC 202
Query: 189 NSVL---------QEKDDTFRE--------WTSRIPWKERKRAVKARENAASKAIVRSEH 231
+ L DD R+ + E+ + I + +
Sbjct: 203 HCRLDVNGSDGDRHGSDDATRDRAQQQQEQQEQQQQQHEQPLQQHGHPRPGRRKIPKRDR 262
Query: 232 PELI---FYGRRSGIVGLTKEEIYQSV---CNSEVSSSGYDKVLVDAECTHDGSIKHIQK 285
+ FY R + + Q+V C S YDKV+VDAECTHDGSIKHI K
Sbjct: 263 MHFVNGMFYCARPLLERYRLDRPAQAVGGGCTCHTHSRLYDKVMVDAECTHDGSIKHIIK 322
Query: 286 FENWGWTTLQRRVLDPERTDSVTNLQ 311
+ WGW T +RR DP R +++ LQ
Sbjct: 323 YNEWGWDTFERRFFDPHRIETLEALQ 348
>gi|413917525|gb|AFW57457.1| hypothetical protein ZEAMMB73_535838 [Zea mays]
Length = 234
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 103/180 (57%), Positives = 130/180 (72%), Gaps = 1/180 (0%)
Query: 127 MILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPG 186
M+ D +G +GS+TGVDVA+HRLAACRT+LQKY+LGDR RLFVADGT FSL P+ +
Sbjct: 1 MLADTLGTTGSLTGVDVAKHRLAACRTMLQKYSLGDRTRLFVADGTLFSLLPVNSRMQRM 60
Query: 187 SCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGL 246
+ ++E F EWTSR WK+R++ KA N + SE PELI+YG+ SG+VG
Sbjct: 61 EGSIGVEENGSIFPEWTSRRSWKDRQKTRKANANGQQHLLAASE-PELIYYGKHSGLVGQ 119
Query: 247 TKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDS 306
K +++ + E +SGYDKVLVDAECTHDGSIKHIQKFE WGW +L RRVLD ERT++
Sbjct: 120 CKSDVFCPSVDDEACTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKSLDRRVLDAERTEN 179
>gi|413917526|gb|AFW57458.1| NOL1/NOP2/sun family [Zea mays]
Length = 271
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 103/180 (57%), Positives = 130/180 (72%), Gaps = 1/180 (0%)
Query: 127 MILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPG 186
M+ D +G +GS+TGVDVA+HRLAACRT+LQKY+LGDR RLFVADGT FSL P+ +
Sbjct: 1 MLADTLGTTGSLTGVDVAKHRLAACRTMLQKYSLGDRTRLFVADGTLFSLLPVNSRMQRM 60
Query: 187 SCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGL 246
+ ++E F EWTSR WK+R++ KA N + SE PELI+YG+ SG+VG
Sbjct: 61 EGSIGVEENGSIFPEWTSRRSWKDRQKTRKANANGQQHLLAASE-PELIYYGKHSGLVGQ 119
Query: 247 TKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDS 306
K +++ + E +SGYDKVLVDAECTHDGSIKHIQKFE WGW +L RRVLD ERT++
Sbjct: 120 CKSDVFCPSVDDEACTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKSLDRRVLDAERTEN 179
>gi|413917527|gb|AFW57459.1| hypothetical protein ZEAMMB73_535838 [Zea mays]
Length = 210
Score = 214 bits (544), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 103/180 (57%), Positives = 130/180 (72%), Gaps = 1/180 (0%)
Query: 127 MILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPG 186
M+ D +G +GS+TGVDVA+HRLAACRT+LQKY+LGDR RLFVADGT FSL P+ +
Sbjct: 1 MLADTLGTTGSLTGVDVAKHRLAACRTMLQKYSLGDRTRLFVADGTLFSLLPVNSRMQRM 60
Query: 187 SCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGL 246
+ ++E F EWTSR WK+R++ KA N + SE PELI+YG+ SG+VG
Sbjct: 61 EGSIGVEENGSIFPEWTSRRSWKDRQKTRKANANGQQHLLAASE-PELIYYGKHSGLVGQ 119
Query: 247 TKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDS 306
K +++ + E +SGYDKVLVDAECTHDGSIKHIQKFE WGW +L RRVLD ERT++
Sbjct: 120 CKSDVFCPSVDDEACTSGYDKVLVDAECTHDGSIKHIQKFEFWGWKSLDRRVLDAERTEN 179
>gi|301095058|ref|XP_002896631.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262108861|gb|EEY66913.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 383
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 120/328 (36%), Positives = 160/328 (48%), Gaps = 66/328 (20%)
Query: 17 AFLDFLKENGLDPSVY---SAADSTPRYIRLKTGN---EADLEE-----IEAEL------ 59
FL FL ++ ++P SA + R+ RLK N E D E+ I A L
Sbjct: 19 GFLRFLSDHHVNPRDLLNPSANGESLRFFRLKQLNSISEKDTEDPRLQAIAANLLREAAE 78
Query: 60 -------KCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGD 112
+ V WL GFYSLP +A YK+G+IYGID +SG AV+ LNI+ G+
Sbjct: 79 NVSEESSDVHPKAVSWLPGFYSLPVSAPLARVDLYKEGQIYGIDISSGYAVTLLNINPGE 138
Query: 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD--------RC 164
HVLDLC APGAKL MI D++ GSVTGVD +R RL ACR L+ KY L + RC
Sbjct: 139 HVLDLCCAPGAKLTMIADLLQLRGSVTGVDFSRSRLGACRQLVHKYKLFESQNEDNKWRC 198
Query: 165 RLFVADGTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASK 224
RLF ADG TF++ P + +L ++ R R+ K + ++ +AR+ K
Sbjct: 199 RLFHADGRTFNIGPKTECVHIDGMGLLLDTQEIASRAPKDRMR-KRKNKSARARDAKRQK 257
Query: 225 AIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQ 284
+V V S+ YDKVLVDAECTHDGSI+H+Q
Sbjct: 258 LLV--------------------------------VDSALYDKVLVDAECTHDGSIRHLQ 285
Query: 285 KF-ENWGWTTLQRRVLDPERTDSVTNLQ 311
+ W R L+ + + LQ
Sbjct: 286 RLITGAKWEEYVRDHLNSSEIERILKLQ 313
>gi|348672879|gb|EGZ12699.1| hypothetical protein PHYSODRAFT_515950 [Phytophthora sojae]
Length = 376
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 139/278 (50%), Gaps = 47/278 (16%)
Query: 45 KTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVS 104
+ E D E +E + + V WL GFYSLP +A YK+G++YGID +SG AVS
Sbjct: 76 REAAENDTEHVEQAVP---QAVPWLPGFYSLPVSAPLARVGLYKEGQLYGIDISSGYAVS 132
Query: 105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD-- 162
L+I G+HVLDLC APGAKL MI D++ GSVTGVD +R RL ACR L+ KY L
Sbjct: 133 LLDIQPGEHVLDLCCAPGAKLTMIADLLQLRGSVTGVDFSRSRLGACRQLVHKYQLFQPE 192
Query: 163 --------RCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRA 214
RCRLF ADG TF++ P +L ++ R R+ K + ++
Sbjct: 193 SEAADTKWRCRLFHADGRTFNIGPKTECAHIDGMEVLLDTQEIASRAPKDRM-RKRKNKS 251
Query: 215 VKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAEC 274
+AR+ K +V + S+ YDKVLVDAEC
Sbjct: 252 ARARDAKRQKLLV--------------------------------LDSALYDKVLVDAEC 279
Query: 275 THDGSIKHIQKFENWG-WTTLQRRVLDPERTDSVTNLQ 311
THDGSI+H+Q+ W R L+ + + LQ
Sbjct: 280 THDGSIRHLQRLNTAAKWEEYVRDHLNSSEIERILKLQ 317
>gi|384487064|gb|EIE79244.1| hypothetical protein RO3G_03949 [Rhizopus delemar RA 99-880]
Length = 252
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/173 (46%), Positives = 119/173 (68%), Gaps = 9/173 (5%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEAD----LEEIEAELKC-KLEKVVW 68
LP++F FL +N +DP++Y+ + PRY R+ T D L++++ +L ++ KV
Sbjct: 28 LPDSFRKFLDDNSIDPAIYTVT-NLPRYFRINTHIPKDKRPTLKDLKEQLNTDQVHKVEG 86
Query: 69 LSGFYSLP-PDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
L FYS+ +++++ ++AYK+ I+GID +S AV AL+I+ D VLDLC APGAKLCM
Sbjct: 87 LEDFYSVQLANVRLSDTLAYKEHIIFGIDLSSAIAVEALSINKDDQVLDLCCAPGAKLCM 146
Query: 128 ILDIIGDS--GSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP 178
I ++ G G+VTGVD+A HRLA CR+LL+KY +G+R RLF ADGT FS+ P
Sbjct: 147 ISNLFGKDGVGTVTGVDIAGHRLATCRSLLKKYKVGERVRLFEADGTKFSIPP 199
>gi|440803600|gb|ELR24489.1| NOL1/NOP2/sun domain containing protein [Acanthamoeba castellanii
str. Neff]
Length = 462
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 123/354 (34%), Positives = 166/354 (46%), Gaps = 70/354 (19%)
Query: 8 EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLK-----TGNEADLE-------EI 55
E+ +PE F+ NGL Y R++RL + LE E+
Sbjct: 12 EVGWAEVPEGMRAFVASNGLPADAYQLR-GLYRFVRLNPRLWSARTTSPLETAAVLQREL 70
Query: 56 EAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVL 115
E + E V WL GFY LP I+ S YK GKIYGIDA+SGAAV AL+ GD+VL
Sbjct: 71 GGEGALEAEAVEWLPGFYRLPHSASISDSDLYKTGKIYGIDASSGAAVVALDPQPGDNVL 130
Query: 116 DLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175
DLC APGAKLCMI D++ G+VTGVD+A RL ACR +L KY + + RL + DGTT +
Sbjct: 131 DLCCAPGAKLCMIADMLAGQGTVTGVDIAEARLGACRNVLAKYEIPN-ARLVLHDGTTVN 189
Query: 176 -LAPLRLLLDPGSCNS----------------------------VLQEKDDTFREWTS-- 204
LAP R + G+ + + KDD R TS
Sbjct: 190 VLAPPRKTMALGAAPTDKTTDNNEEEEEEEEEEAEEETKEGQEEEGEAKDDDGRGKTSTG 249
Query: 205 ---RIPWKERKRAVKA----RENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCN 257
R K+R RA A R+ K ++ E P +FY +C
Sbjct: 250 RICRHVSKKRDRAELAAARWRKKTKRKRVLPDELPH-VFYA------------YPYDLCL 296
Query: 258 SEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSVTNLQ 311
+ S+ YD+V++DA+CT D S++HI + GW R+ T+ +LQ
Sbjct: 297 TSASAQLYDRVMIDAQCTLDASVRHILHYGKLGWKDFTPRI-----TEETVDLQ 345
>gi|328873410|gb|EGG21777.1| Putative nucleolar protein [Dictyostelium fasciculatum]
Length = 475
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/192 (42%), Positives = 116/192 (60%), Gaps = 23/192 (11%)
Query: 15 PEAFLDFLKENGLDPSVYSAA-DSTPRYIRLKT------GNEAD---------LEEIEAE 58
P+ F+DFL +N + Y D PR+IRL G+ D +++IE E
Sbjct: 57 PKEFIDFLVDNNIPQDSYDINLDDLPRFIRLNNRLILEDGHHQDGHHDTKQQTVKQIEQE 116
Query: 59 LKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLC 118
LK L+++ WL FY L + I++S +YK+G +YG+DA+SGAA+ AL+ GD+VLD+C
Sbjct: 117 LKTPLKELAWLPNFYQLKSTVGISSSPSYKKGIMYGMDASSGAAILALDPQPGDNVLDIC 176
Query: 119 AAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF---- 174
APG K CMI D+I GSVTGVD++ RL +C+T+++KY + + RLF D TTF
Sbjct: 177 CAPGTKFCMIADLIKGQGSVTGVDISPSRLGSCKTVIKKYKIP-KARLFQCDATTFNIKA 235
Query: 175 --SLAPLRLLLD 184
SL PL L D
Sbjct: 236 PSSLDPLPHLSD 247
>gi|330795541|ref|XP_003285831.1| hypothetical protein DICPUDRAFT_76769 [Dictyostelium purpureum]
gi|325084210|gb|EGC37643.1| hypothetical protein DICPUDRAFT_76769 [Dictyostelium purpureum]
Length = 460
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/173 (45%), Positives = 115/173 (66%), Gaps = 11/173 (6%)
Query: 15 PEAFLDFLKENGLDPSVYSAADSTPRYIRLKTG---NEAD----LEEIEAELKCKLEKVV 67
P+ F++FL N + Y+ D PR+IR+K N D ++ IE +L KL +
Sbjct: 47 PKEFIEFLNNNDIPLDSYNVKD-IPRFIRIKQKEYENSKDKNLFIKSIEEDLGTKLIPIK 105
Query: 68 WLSGFYSLP-PDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLC 126
WL FY + I+++ +YK G IYG+DA+SGAA+ ALN GD+VLD+C APG KLC
Sbjct: 106 WLPYFYKFENSNATISSTKSYKSGIIYGMDASSGAAILALNPKPGDNVLDICCAPGTKLC 165
Query: 127 MILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF-SLAP 178
MI D++G +G+V+GVD++ +RL +C+T+L+KY + + RLF +DGTTF SLAP
Sbjct: 166 MISDMLGGNGTVSGVDISSNRLGSCKTILKKYKIPN-VRLFCSDGTTFDSLAP 217
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 6/51 (11%)
Query: 261 SSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPERTDSVTNLQ 311
SS+ YDKV+VDAEC+ D SI+H+ K G R PE++ +T LQ
Sbjct: 314 SSTLYDKVIVDAECSLDASIRHLIKHSKMG------RYYAPEKSKQLTELQ 358
>gi|118384082|ref|XP_001025194.1| hypothetical protein TTHERM_00685920 [Tetrahymena thermophila]
gi|89306961|gb|EAS04949.1| hypothetical protein TTHERM_00685920 [Tetrahymena thermophila
SB210]
Length = 479
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 124/221 (56%), Gaps = 11/221 (4%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCK-LEKVVWLSGF 72
LP F FLK+N ++ + ++ PRYIRLK + +EE++ +L ++K+ +L F
Sbjct: 35 LPSTFTQFLKDNNINLEYFQEIENFPRYIRLKPDIKVSIEELKKDLGTDDVQKIDYLCNF 94
Query: 73 YSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDII 132
YS+P ++KI S Y QG +YGID +S A + +L+ G+ VLDLC PG KLC I DII
Sbjct: 95 YSIPENVKIVNSKYYSQGLLYGIDLSSAAVIKSLDPQKGEKVLDLCCCPGMKLCNIADII 154
Query: 133 GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL--RLLLDPGSCNS 190
G G GVD+ RL CR++++KY L +L +ADGTT++ R+L+D C
Sbjct: 155 GAEGKAFGVDINETRLNTCRSIVKKYKLDHIIKLELADGTTYNKESQFDRVLVD-AECTH 213
Query: 191 VLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEH 231
D + + I K +K ++ +N A + I +E
Sbjct: 214 -----DGSLKHLAKFI--KNQKAVIEDMQNNAKETIDNNEQ 247
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 22/24 (91%)
Query: 263 SGYDKVLVDAECTHDGSIKHIQKF 286
S +D+VLVDAECTHDGS+KH+ KF
Sbjct: 200 SQFDRVLVDAECTHDGSLKHLAKF 223
>gi|281201563|gb|EFA75772.1| Putative nucleolar protein [Polysphondylium pallidum PN500]
Length = 463
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/176 (44%), Positives = 113/176 (64%), Gaps = 12/176 (6%)
Query: 15 PEAFLDFLKENGLDPSVYSAADSTPRYIRLKTG--NEAD-------LEEIEAELKCKLEK 65
P+ F+DFL EN + Y + PR+IRL N D ++++E ELK +L
Sbjct: 59 PKEFIDFLVENDIPFDSYDIKE-IPRFIRLNNRLLNSNDKQDINSFIKQLETELKTELIP 117
Query: 66 VVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKL 125
+ WL FY L + IA+S +YK G IYG+DA+SGAA+ AL+ GD+VLD+C APG KL
Sbjct: 118 LKWLPHFYKLSERVGIASSKSYKNGLIYGMDASSGAAILALDPQPGDNVLDICCAPGTKL 177
Query: 126 CMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL-APLR 180
MI D++ G+VTGVD++ RL +C+T+L+KY + RLF DG+TF++ AP++
Sbjct: 178 SMIADMMNGEGTVTGVDISLQRLGSCKTILKKYKVP-SARLFQCDGSTFNIKAPIK 232
>gi|66825641|ref|XP_646175.1| hypothetical protein DDB_G0269676 [Dictyostelium discoideum AX4]
gi|60474251|gb|EAL72188.1| hypothetical protein DDB_G0269676 [Dictyostelium discoideum AX4]
Length = 518
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 113/174 (64%), Gaps = 12/174 (6%)
Query: 15 PEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEAD--------LEEIEAELKCKLEKV 66
P+ F++FL N + Y+ + S PR+IR+K N + + IE+E+K KL +
Sbjct: 61 PKEFIEFLNNNNIPLDSYNIS-SIPRFIRIKPNNNNNNNNNGNELISIIESEIKTKLIPL 119
Query: 67 VWLSGFYSLP-PDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKL 125
WL FY L + I++S +YK G YG+DA+SGAA+ ALN GD+VLD+C APG KL
Sbjct: 120 NWLPNFYKLEDSSVNISSSKSYKSGIFYGMDASSGAAILALNPKPGDNVLDICCAPGTKL 179
Query: 126 CMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF-SLAP 178
CMI D++ +G++TGVD++ RL C+T+L+KY + + RLF+ DGT F SLAP
Sbjct: 180 CMISDLLEGNGTITGVDISESRLGTCKTILKKYKIPN-ARLFICDGTKFNSLAP 232
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 13/68 (19%)
Query: 249 EEIYQSVCNS-----EVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPER 303
E++Y CN+ V YDKV+VDAEC+ D SI+H+ K+ R LD E+
Sbjct: 370 EDLY--FCNTFFMRYSVGGGLYDKVIVDAECSLDASIRHLLKYSKIS------RNLDLEK 421
Query: 304 TDSVTNLQ 311
+ + NLQ
Sbjct: 422 SKQLINLQ 429
>gi|422293458|gb|EKU20758.1| s-adenosyl-l-methionine-dependent methyltransferase
domain-containing protein [Nannochloropsis gaditana
CCMP526]
Length = 241
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 95/177 (53%), Gaps = 33/177 (18%)
Query: 31 VYSAADST-PRYIRLK----TGN---------EADLEEIEAELKCKLEKVVWL-----SG 71
V SA+D PRYIR++ +GN E + EA L +V W
Sbjct: 39 VVSASDGVVPRYIRIRRMASSGNNVGANKNHEEEEHTVREAVLAAGGRRVPWCPPYASES 98
Query: 72 FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDI 131
FY+LPP+ +IA Y+QGK+YG+D ASG AV AL GD+VLDLC PG KLCM+ +
Sbjct: 99 FYALPPEFRIAQWPLYQQGKVYGMDVASGVAVWALGPRPGDNVLDLCCCPGLKLCMVAEQ 158
Query: 132 IGDSGSVTGVDVARHRLAACRTLLQKYALGDR--------------CRLFVADGTTF 174
+ +G++TGVD++R RL CR +L KY +G CRL ADG F
Sbjct: 159 MHHTGTITGVDISRGRLTVCRQILVKYQIGRAAGVLVSPCSVVPLWCRLLCADGCCF 215
>gi|422294880|gb|EKU22180.1| s-adenosyl-l-methionine-dependent methyltransferase
domain-containing protein [Nannochloropsis gaditana
CCMP526]
Length = 264
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/177 (40%), Positives = 95/177 (53%), Gaps = 33/177 (18%)
Query: 31 VYSAADST-PRYIRLK----TGN---------EADLEEIEAELKCKLEKVVWL-----SG 71
V SA+D PRYIR++ +GN E + EA L +V W
Sbjct: 39 VVSASDGVVPRYIRIRRMASSGNNVGANKNHEEEEHTVREAVLAAGGRRVPWCPPYASES 98
Query: 72 FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDI 131
FY+LPP+ +IA Y+QGK+YG+D ASG AV AL GD+VLDLC PG KLCM+ +
Sbjct: 99 FYALPPEFRIAQWPLYQQGKVYGMDVASGVAVWALGPRPGDNVLDLCCCPGLKLCMVAEQ 158
Query: 132 IGDSGSVTGVDVARHRLAACRTLLQKYALGDR--------------CRLFVADGTTF 174
+ +G++TGVD++R RL CR +L KY +G CRL ADG F
Sbjct: 159 MHHTGTITGVDISRGRLTVCRQILVKYQIGRAAGVLVSPCSVVPLWCRLLCADGCCF 215
>gi|18481711|gb|AAL73533.1|AF466200_12 putative phosphate/phosphoenolpyruvate translocator [Sorghum
bicolor]
Length = 531
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 71/100 (71%), Gaps = 11/100 (11%)
Query: 8 EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIR-----------LKTGNEADLEEIE 56
+ + LPLP+AFL+FL ENGLDP+VYS A + PRYIR LK G E+ + EIE
Sbjct: 431 QTASLPLPDAFLEFLSENGLDPAVYSMAATIPRYIRELDLVFFLIPRLKPGMESQITEIE 490
Query: 57 AELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGID 96
+ELKC LEKV WL GFY++PP+I+IA S AY+QGK GI
Sbjct: 491 SELKCVLEKVSWLPGFYAIPPEIQIAGSKAYQQGKARGIH 530
>gi|167533590|ref|XP_001748474.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772993|gb|EDQ86638.1| predicted protein [Monosiga brevicollis MX1]
Length = 297
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 98/189 (51%), Gaps = 13/189 (6%)
Query: 135 SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDP-GSCNSVLQ 193
GSVTGVDV R RLAACR LLQKYA ++ RLF+ DG TF+ P +L P +
Sbjct: 9 QGSVTGVDVQRERLAACRNLLQKYA-SNKVRLFLGDGCTFAEGPASWMLKPMPTVPEACS 67
Query: 194 EKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPEL---IFYGR---RSGIVGLT 247
DT R ER+ + + + + R + +F+ R+
Sbjct: 68 HAGDTTEPTPKRARPSERELLRRKEDARLVRNLPRKDRHHACGNMFFCSPDLRAAREAYL 127
Query: 248 KEEIYQ---SVCNSEVSSSG--YDKVLVDAECTHDGSIKHIQKFENWGWTTLQRRVLDPE 302
+E+ Q N V ++ YDKVLVDAECTHDGSIKH+ KF+ WGW+T ++R DP
Sbjct: 128 REQDAQDEAQTANPPVQATDQLYDKVLVDAECTHDGSIKHLTKFDRWGWSTFEQRFFDPT 187
Query: 303 RTDSVTNLQ 311
R + LQ
Sbjct: 188 RISQLETLQ 196
>gi|145488288|ref|XP_001430148.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124397244|emb|CAK62750.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 124/233 (53%), Gaps = 25/233 (10%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFY 73
L F +FL+E G+D ++ + T RYIR+K + E+++ ++ ++ + + Y
Sbjct: 7 LSPQFREFLQEEGIDEEIF-LFEQTLRYIRIKPDYQITFEQLQQQVSNQILPIYEIPTLY 65
Query: 74 SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGD-HVLDLCAAPGAKLCMILDII 132
SLP D KI+ YK G +YGID +S A V +L+I+ D ++L++C APGAKL I D++
Sbjct: 66 SLPADEKISNLQLYKDGNLYGIDKSSAAVVYSLDINKNDTNLLEICCAPGAKLTFIADLL 125
Query: 133 -------GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL--RLLL 183
G V GVD++++RL ++++ KY L L + DGT + L ++L+
Sbjct: 126 RLQTKEDGIQRKVFGVDISQNRLNITQSIVNKYKLEKFVELILEDGTKYKSEILFDKVLI 185
Query: 184 D-----PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEH 231
D GS + +++ ++ P +E+ + + N ASK ++ +
Sbjct: 186 DAECTHEGSIKHL--------KKYINK-PIQEKNTKKQQKNNKASKKQLQKNY 229
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 23/24 (95%)
Query: 265 YDKVLVDAECTHDGSIKHIQKFEN 288
+DKVL+DAECTH+GSIKH++K+ N
Sbjct: 180 FDKVLIDAECTHEGSIKHLKKYIN 203
>gi|261327181|emb|CBH10157.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 496
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 141/299 (47%), Gaps = 42/299 (14%)
Query: 16 EAFLDFLKENGLDPSVY----SAADSTPRYIRLKTGNEADLEEIEAELKCK--------- 62
E F+++ + + L P ++ PRY+R++ +D ++I C
Sbjct: 15 EEFINYCRAHRLPPQLFHDLRELLPRMPRYVRIRP---SDAQQIILPCSCDQGSRVPSDV 71
Query: 63 --------------LEKVVWLSGFY--SLPPDIKIATSMAYKQGKIYGIDAASGAAVSAL 106
+ +V WL Y +LP D ++ Y+ G + +DAAS AAV AL
Sbjct: 72 IHELSTAVGGPTGCVYEVEWLPRPYCLALPRDTAVSQLELYRSGVVSAMDAASIAAVVAL 131
Query: 107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRL 166
G+ V D+C +PG KL I D IG+ GS G D+ RL A R++++K+ + C L
Sbjct: 132 RPRRGETVWDVCCSPGMKLSFIADAIGEEGSAVGTDINLDRLFAARSVMKKHRANNVC-L 190
Query: 167 FVADGTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAI 226
FVADGT+F+L + D R+ + +++RA A +++ +
Sbjct: 191 FVADGTSFALRTAVAVAQAARLYRGKSNTDGLTALEERRLRYMKKRRAGGA-ADSSDGTV 249
Query: 227 VRSEHPE--LIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHI 283
R E + L+F ++ + QS ++ G+D+VLVDAEC+HDGS+ H+
Sbjct: 250 TRDEDDQVALVF------TCDEARKRLVQSGESANQKHYGFDRVLVDAECSHDGSLAHM 302
>gi|72387243|ref|XP_844046.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62358856|gb|AAX79308.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70800578|gb|AAZ10487.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 496
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 140/297 (47%), Gaps = 38/297 (12%)
Query: 16 EAFLDFLKENGLDPSVY----SAADSTPRYIRLKTGNEAD-----------------LEE 54
E F+++ + + L P ++ PRY+R++ + + E
Sbjct: 15 EEFINYCRAHRLPPQLFHDLRELLPRMPRYVRIRPSDAQQRILPCSCDQGSRVPSDVIHE 74
Query: 55 IEAELK----CKLEKVVWLSGFY--SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNI 108
+ + C E V WL Y +LP D ++ Y+ G + +DAAS AAV AL
Sbjct: 75 LSTAVGGPTGCVYE-VEWLPRPYCLALPRDTAVSQLELYRSGVVSAMDAASIAAVVALRP 133
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
G+ V D+C +PG KL I D IG+ GS G D+ RL A R++++K+ + C LFV
Sbjct: 134 RRGETVWDVCCSPGMKLSFIADAIGEEGSAVGTDINLDRLFAARSVMKKHRANNVC-LFV 192
Query: 169 ADGTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVR 228
ADGT+F+L + D R+ + +++RA A +++ + R
Sbjct: 193 ADGTSFALRTAVAVAQAAKLYRGKSNTDGLTALEERRLRYMKKRRAGGA-ADSSDGTVTR 251
Query: 229 SEHPE--LIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHI 283
E + L+F ++ + QS ++ G+D+VLVDAEC+HDGS+ H+
Sbjct: 252 DEDDQVALVF------TCDEARKRLVQSGESANQKHYGFDRVLVDAECSHDGSLAHM 302
>gi|407410616|gb|EKF32988.1| hypothetical protein MOQ_003154 [Trypanosoma cruzi marinkellei]
Length = 510
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 147/315 (46%), Gaps = 69/315 (21%)
Query: 16 EAFLDFLKENGLDPSVY----SAADSTPRYIRLK-----------------TGNEADLEE 54
E F+ + + + L P ++ + PRYIR++ G +A +E
Sbjct: 18 EEFIRYCRVHHLPPLLFHDISEVLERMPRYIRVRPQYMLKNMVMPPEDNKVAGEDAARQE 77
Query: 55 -------IEAEL---KCKLEKVVWLSG--FYSLPPDIKIATSMAYKQGKIYGIDAASGAA 102
I A +E+V WL +Y++P D+ ++ + Y+ G + +DAAS AA
Sbjct: 78 GCQTKAQIAASFGVSSASVEEVEWLPHPYYYAVPRDVAMSRAAIYQIGMVSAMDAASVAA 137
Query: 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
V AL GD V D+C +PG KL +I D IG++G G D+ +RL R++L+K+ +G+
Sbjct: 138 VVALRPCQGDLVWDVCCSPGMKLSLIADAIGETGVAVGTDINLNRLFTARSVLRKHQVGN 197
Query: 163 RCRLFVADGTTFSL----APLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKAR 218
C LF ADGT+F+L A L ++ PG PW+ER+ +
Sbjct: 198 VC-LFAADGTSFTLHEAAAALDEMISPGKPGG------------NGLTPWEERQLRRFRK 244
Query: 219 -------ENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQSVC---NSEVSSSGYDKV 268
E A + + V E R V + + + +C + G+D+V
Sbjct: 245 RRREMGVETATASSGVNEE---------RELAVAFSTDPARERLCGIGKRKNEHHGFDRV 295
Query: 269 LVDAECTHDGSIKHI 283
LVDAEC+HDGS+ HI
Sbjct: 296 LVDAECSHDGSLAHI 310
>gi|71651681|ref|XP_814513.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70879492|gb|EAN92662.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 510
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 142/311 (45%), Gaps = 61/311 (19%)
Query: 16 EAFLDFLKENGLDPSVY----SAADSTPRYIRLK-----------------TGNEADLEE 54
E F+ + + L P ++ + PRYIR++ G +A +E
Sbjct: 18 EEFIRYCLVHHLPPLLFHDLSEVLERIPRYIRVRPQYMLKNILMPPEDNNVAGEDAARQE 77
Query: 55 ---IEAEL-------KCKLEKVVWLSG--FYSLPPDIKIATSMAYKQGKIYGIDAASGAA 102
I+A++ +E+V WL +Y++P + ++ + Y+ G + +DAAS AA
Sbjct: 78 RCQIKAQIAASFGVSSASVEEVEWLPNPYYYAVPRGVAMSRAAIYQIGMVSAMDAASVAA 137
Query: 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
V AL GD V D+C +PG KL +I D IG++G G D+ +RL R++L+K+ G+
Sbjct: 138 VVALRPCQGDLVWDVCCSPGMKLSLIADAIGETGVAVGTDINLNRLFTARSVLRKHQAGN 197
Query: 163 RCRLFVADGTTFSLAPLRLLLD-------PGSCNSVLQEKDDTFREWTSRIPWKERKRAV 215
C LF ADGT+F+L LD PG PW+ERK
Sbjct: 198 VC-LFAADGTSFTLHEAAAALDEMISSGKPGG---------------NGLTPWEERKLRR 241
Query: 216 KARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSE---VSSSGYDKVLVDA 272
+ V++ + R V + + +C E G+D+VLVDA
Sbjct: 242 FR--KRRHEMSVKTATASIGVNEERELAVAFSTVPARERICCIEKWKKEHQGFDRVLVDA 299
Query: 273 ECTHDGSIKHI 283
EC+HDGS+ HI
Sbjct: 300 ECSHDGSLAHI 310
>gi|71658948|ref|XP_821200.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70886572|gb|EAN99349.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 510
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 118/226 (52%), Gaps = 16/226 (7%)
Query: 63 LEKVVWLSG--FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
+E+V WL +Y++P + ++ + Y+ G + +DAAS AAV AL GD V D+C +
Sbjct: 96 VEEVEWLPNPYYYAVPRGVAMSRAAIYQIGMVSAMDAASVAAVVALRPCQGDLVWDVCCS 155
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR 180
PG KL +I D IG++G G D+ +RL R++L+K+ G+ C LF ADGT+F+L
Sbjct: 156 PGMKLSLIADAIGETGVAVGTDINLNRLFTARSVLRKHQAGNVC-LFAADGTSFTLHEAA 214
Query: 181 LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRR 240
LD S + + W R + RKR + A+ +I E EL
Sbjct: 215 AALD--EMISSGKPGGNGLTPWEERKLRRFRKRRHEMSVETATASIGMKEEREL------ 266
Query: 241 SGIVGLTKEEIYQSVCNSEV---SSSGYDKVLVDAECTHDGSIKHI 283
V + + +C E G+D+VLVDAEC+HDGS+ HI
Sbjct: 267 --AVAFSTVHARERICCIEKWKNEHQGFDRVLVDAECSHDGSLAHI 310
>gi|407850047|gb|EKG04589.1| hypothetical protein TCSYLVIO_004353 [Trypanosoma cruzi]
Length = 510
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 117/240 (48%), Gaps = 44/240 (18%)
Query: 63 LEKVVWLSG--FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
+E+V WL +Y++P + ++ + Y+ G + +DAAS AAV AL GD V D+C +
Sbjct: 96 VEEVEWLPNPYYYAVPRGVAMSRAAIYQIGMVSAMDAASVAAVVALRPCQGDLVWDVCCS 155
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR 180
PG KL +I D IG++G G D+ +RL R++L+K+ G+ C LF ADGT+F+L
Sbjct: 156 PGMKLSLIADAIGETGVAVGTDINLNRLFTARSVLRKHQAGNVC-LFAADGTSFTLHEAA 214
Query: 181 LLLD-------PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKAR-------ENAASKAI 226
LD PG PW+ERK R E A +
Sbjct: 215 AALDEMISSGKPGG---------------NGLTPWEERKLRRFRRRRHEMSVETATASIG 259
Query: 227 VRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEV---SSSGYDKVLVDAECTHDGSIKHI 283
V+ E R V + + +C E G+D+VLVDAEC+HDGS+ HI
Sbjct: 260 VKEE---------REVAVAFSTVHARERICCIEKWKNEHQGFDRVLVDAECSHDGSLAHI 310
>gi|428170277|gb|EKX39203.1| hypothetical protein GUITHDRAFT_114636 [Guillardia theta CCMP2712]
Length = 303
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 118/257 (45%), Gaps = 67/257 (26%)
Query: 79 IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDII------ 132
+K++T YKQG++YGIDAAS AA + AKLCM+ D +
Sbjct: 1 MKLSTWEPYKQGQVYGIDAASAAAGAPG----------------AKLCMLADRVCPPSLT 44
Query: 133 --------------GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP 178
+G V GVDV+ RLAA +T+L+KY + RL++ DG +F L P
Sbjct: 45 QEPHGSEASEDASATRAGFVVGVDVSMPRLAATKTVLRKYEQRN-IRLYLEDGASF-LPP 102
Query: 179 LRLLLDPGSCNSVLQEKDDTFREWTSRIPWKER----KRAVKARENAASKAIVRSEHPEL 234
P C+ E++ + RI +R +R ARE A E P
Sbjct: 103 -----RPRMCSKEAAEEEKI--RFLRRIAEADRSIGKRRKRSAREVPVQDAKEGEEAPAR 155
Query: 235 IFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTL 294
F+ + G+DKVLVDAECTHD S +H+ KF+ WGW+T+
Sbjct: 156 YFFE------------------TPQAGHGGFDKVLVDAECTHDASSRHMSKFDKWGWSTM 197
Query: 295 QRRVLDPERTDSVTNLQ 311
+RR R DS+ +LQ
Sbjct: 198 ERRWNREGRLDSLESLQ 214
>gi|224004322|ref|XP_002295812.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209585844|gb|ACI64529.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 380
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 116/265 (43%), Gaps = 60/265 (22%)
Query: 92 IYGIDAASGAAVSALNISAGDH----VLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHR 147
+Y +D SG A ++ +G+ VLDLC APG KLCMI D+I S +V GVD+++ R
Sbjct: 16 LYDVDNGSGVKKQAQSVLSGEEESLRVLDLCVAPGLKLCMIADMISPSSTVVGVDISQKR 75
Query: 148 LAACRTLLQKYALGDRC--------------------------------------RLFVA 169
++ C+ ++QKY + + RL+ A
Sbjct: 76 ISLCKNIIQKYHIHETASASKLSQNEDHLSREKTSMATVSKEQTTIEQPPTQPTIRLYCA 135
Query: 170 DGTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRS 229
DGTTF P N ++ + E R K ++ +ARE + R
Sbjct: 136 DGTTFGANQTF----PTQENGLVFDSTSASEEHKHRGKRKRMNKSARAREKRRLLELQRE 191
Query: 230 EHPELIFYGRRSGIVGLTK--EEIYQSVCNSEVSSSG---YDKVLVDAECTHDGSIKHIQ 284
+ + + K E+ + + N++ S+ +D+VLVDAEC+ DG+++H Q
Sbjct: 192 DLTSIDSLNAEQSTLPAEKPNEDSEEHITNNDRRSNTIQPFDRVLVDAECSTDGAVRHNQ 251
Query: 285 KFEN---WGWTT------LQRRVLD 300
K + W T LQ+R+LD
Sbjct: 252 KRQQGPTWNATNMNELVDLQKRLLD 276
>gi|219121771|ref|XP_002181233.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407219|gb|EEC47156.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 302
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 75/246 (30%), Positives = 114/246 (46%), Gaps = 63/246 (25%)
Query: 40 RYIRLKTGNEAD--LEEIEAELKCKLE---KVVWLS---GFYSLPPDIKIATSMAYKQGK 91
R+IRL + D L+ ++AEL V WL GFY+LP D + S +++ +
Sbjct: 42 RFIRLNPRWDRDETLQLLKAELPTPSVYPIPVPWLDDAFGFYALPGDFPLQRSKSFQSAR 101
Query: 92 IYGIDAASGAAVSALNI-----------SAGDH------------VLDLCAAPGAKLCMI 128
+YG D +SGAAV+AL +AG H VLDLC +PG KLC +
Sbjct: 102 VYGHDVSSGAAVAALLTDQHDAHTPIIEAAGAHSETHNGQPLQLRVLDLCCSPGLKLCAM 161
Query: 129 LDIIGDSGS---VTGVDVARHRLAACRTLLQKYAL----------------GDRCRLFVA 169
D + G+ V GVDV+ R+A C+ ++ KY L R RL++A
Sbjct: 162 SDFLNHQGTPAMVIGVDVSESRMAVCKKVVHKYQLMHEGITRSSTLATPSDDSRIRLYLA 221
Query: 170 DGTTFSLA--PLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIV 227
DGTTF + L L+ D SV +++ + K ++ +AR+ A++
Sbjct: 222 DGTTFGMENRSLNLVFD-----SVAASEENVLGK------RKRMNKSARARQRKRLDALI 270
Query: 228 RSEHPE 233
E P+
Sbjct: 271 SLEQPK 276
>gi|294887533|ref|XP_002772153.1| ribosomal RNA small subunit methyltransferase B, putative
[Perkinsus marinus ATCC 50983]
gi|239876099|gb|EER03969.1| ribosomal RNA small subunit methyltransferase B, putative
[Perkinsus marinus ATCC 50983]
Length = 402
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 96/218 (44%), Gaps = 56/218 (25%)
Query: 72 FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSAL----NISAGDHVLDLCAAPGAKLCM 127
FYS+P +++ YK G+++G+D +S +AV AL AG VLDLC APG KL M
Sbjct: 101 FYSIPTATQMSRLNLYKGGRLFGLDVSSASAVFALLGESGPEAGSAVLDLCCAPGTKLLM 160
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS 187
+ ++ S V G+DV+R RL CR+LL KY L+ DG P+
Sbjct: 161 LSELCPGS-RVAGIDVSRDRLMVCRSLLTKYG-AHNVELYHGDGRYVCSRPM-------- 210
Query: 188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLT 247
R+ +RK + R+ S E P
Sbjct: 211 ----------------ERLTVAKRKSRGRKRQRRGSP-----EDP--------------- 234
Query: 248 KEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQK 285
++ + + +D VL DAECTHDGS+KH+ K
Sbjct: 235 ------PPSSTTLEAESWDLVLCDAECTHDGSVKHMLK 266
>gi|154341174|ref|XP_001566540.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063863|emb|CAM40053.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 749
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 133/321 (41%), Gaps = 70/321 (21%)
Query: 31 VYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLS-GFYSLPPDIKIATSMAYKQ 89
++ + PR I L+ G L + +E V WL G ++LP + S +
Sbjct: 166 IHCTCGTVPRAIVLRLG----LAGLTGLPLASVEPVAWLPCGVFALPWSYAMGDSPLFHD 221
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDII--GDSGS---------- 137
G + +DAAS AAV AL+ GD VLDLC APG KL ++ D + G +G
Sbjct: 222 GTLIAMDAASIAAVVALHPRKGDRVLDLCCAPGMKLGLLADAVTRGHTGGACSPLSAVSP 281
Query: 138 ------VTGVDVARHRLAACRTLLQKYALGDRCR--------------LFVADGTTFSLA 177
GVDV RL R+ L+K + + LF DG FSL
Sbjct: 282 PLIDGIAVGVDVNLSRLYMARSTLKKQQQQPKHQGHSTTGTQPSLPVCLFAGDGCRFSLG 341
Query: 178 PLRLLLD-PGSCNSV-----------LQEKDDTFREWTSRIPWKERKRAVKARENAASKA 225
L+ GS +V LQ + DT T+R W R+ +K +A
Sbjct: 342 SAAAALNLTGSVVNVGTGLTTEEKRRLQRQHDT-TAITAR--WNRRRSTLKEALSAGPHE 398
Query: 226 IVRSEHPELIF---YGRRSGIVGLTKEEIYQSVCNSEVSSSG----------YDKVLVDA 272
S P +++ Y R L + + C + + S +D+VLVDA
Sbjct: 399 AESSPPPYVVYAPSYART-----LLATWLQEKACGLQTTDSTAPLPQPQPLLFDRVLVDA 453
Query: 273 ECTHDGSIKHIQKFENWGWTT 293
EC+HDGS+ H+Q E TT
Sbjct: 454 ECSHDGSVAHMQLDEQHESTT 474
>gi|397633743|gb|EJK71115.1| hypothetical protein THAOC_07474, partial [Thalassiosira oceanica]
Length = 461
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 129/304 (42%), Gaps = 89/304 (29%)
Query: 66 VVWLSG------FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDH------ 113
V WL F+++P + + S +++ G+IYG+DA SGAAV+AL D
Sbjct: 23 VPWLRSSQHGFEFFAIPEEFGLNKSESFQSGRIYGMDATSGAAVAALLFDMFDRDKKDAD 82
Query: 114 ----------------VLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157
VLD+C APG KLCM+ D+ + V GVD++ R+ C+ ++ K
Sbjct: 83 GKGCESVKDRPAKTLRVLDMCCAPGLKLCMLADLAPRNSLVEGVDISAQRMDLCKKIVTK 142
Query: 158 Y------ALGDR------------------CRLFVADGTTFSLAPLRLLLDPGSCNSVLQ 193
Y A G+ ++ D T F DP + + ++
Sbjct: 143 YQFPSFSAPGEEGASQEGGNDEGASDDSVDINMYCTDATRF---------DPHAMHGLVF 193
Query: 194 EKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVG-------L 246
T +E SR R + R N +++A E L+ R++ + L
Sbjct: 194 NSQMTRQEIKSR-------RGKRKRMNKSARA---REKRRLLDVQRKAESLAPKVPTQDL 243
Query: 247 TKEEIYQSVCNSEVSSSG--YDKVLVDAECTHDGSIKHIQKFEN---WGWTT------LQ 295
TK E + + +S YD VLVDAEC+ DG+I+H +K W T LQ
Sbjct: 244 TKGEDRMAAPMAPHASPTPVYDLVLVDAECSTDGAIRHKEKASKPPAWNETNMDELVDLQ 303
Query: 296 RRVL 299
+R++
Sbjct: 304 KRLI 307
>gi|401415724|ref|XP_003872357.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488581|emb|CBZ23828.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 703
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 91/300 (30%), Positives = 134/300 (44%), Gaps = 54/300 (18%)
Query: 36 DSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLS-GFYSLPPDIKIATSMAYKQGKIYG 94
D PR L+ G A L + E +E V WL G ++LP + + + G +
Sbjct: 129 DDAPRASVLRLGLAA-LTGLALE---SVEPVAWLPCGVFALPWSYPMGGNPLFLDGTLLA 184
Query: 95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDII-----GDSGS------------ 137
+DAAS AAV AL+ GD VLDLC APG KL ++ D + G +GS
Sbjct: 185 MDAASIAAVVALHPRKGDRVLDLCCAPGMKLGLLADAVTRGHAGGTGSPLSAASPSLADG 244
Query: 138 -VTGVDVARHRLAACRTLLQKYALGDRCR---------LFVADGTTFSL----APLRLL- 182
V GVDV+ RL R+ L+K LF DG FS+ A L L
Sbjct: 245 LVVGVDVSLARLYMTRSTLKKQQQQGGTADTPSSLPVCLFAGDGCCFSMESAGAALDLTG 304
Query: 183 --LDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEH--PELIFYG 238
+D G+ + + E+ R++ + KR A AA ++E P + Y
Sbjct: 305 SAVDAGTGLTKV-ERRRLQRQYNATTATAGSKRDRSASGAAACVVSHKAESSPPPTVVYA 363
Query: 239 RRSGIVGLTKEEIYQSVCNSEVSSS-----------GYDKVLVDAECTHDGSIKHIQKFE 287
+ I + +++ C S+V+ + +D+VLVDAEC+HDGS+ H+Q E
Sbjct: 364 -PAHIRPIVAAWLHEEACGSQVADALTTPPSHPQPLLFDRVLVDAECSHDGSVAHMQLGE 422
>gi|294886901|ref|XP_002771910.1| ribosomal RNA small subunit methyltransferase B, putative
[Perkinsus marinus ATCC 50983]
gi|239875710|gb|EER03726.1| ribosomal RNA small subunit methyltransferase B, putative
[Perkinsus marinus ATCC 50983]
Length = 402
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 94/218 (43%), Gaps = 56/218 (25%)
Query: 72 FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSAL----NISAGDHVLDLCAAPGAKLCM 127
FYS+P +++ YK G ++G+D +S +AV AL G VLDLC APG KL M
Sbjct: 101 FYSIPTATQMSRLNLYKGGHLFGLDVSSASAVYALLGESGPEPGSAVLDLCCAPGTKLLM 160
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS 187
+ ++ S V G+DV+R RL CR+LL KY L+ DG P+ L
Sbjct: 161 LSELCPGS-RVAGIDVSRDRLMVCRSLLTKYG-AHNVELYHGDGRYVCSRPMERL----- 213
Query: 188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLT 247
T + SR ++R+R + S + +E
Sbjct: 214 ----------TVAKRKSR--GRKRQRRGSPEDPPPSSTTLEAE----------------- 244
Query: 248 KEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQK 285
+D VL DAECTHDGS+KH+ K
Sbjct: 245 ----------------SWDLVLCDAECTHDGSVKHMLK 266
>gi|389594069|ref|XP_003722283.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438781|emb|CBZ12541.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 710
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 130/307 (42%), Gaps = 61/307 (19%)
Query: 33 SAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLS-GFYSLPPDIKIATSMAYKQGK 91
+A D PR L+ G L + +E V WL G ++LP + + + G
Sbjct: 126 NARDDAPRAGVLRLG----LAALTGLPLKSVEPVAWLPCGVFALPWSYAMGGNPLFLDGT 181
Query: 92 IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG------------------ 133
+ +DAAS AAV AL+ GD VLDLC APG KL ++ D +
Sbjct: 182 LLAMDAASIAAVVALHPRKGDRVLDLCCAPGMKLGLLADAVTRGHAGAAGVPLSVASPSL 241
Query: 134 DSGSVTGVDVARHRLAACRTLLQK------YALGDRCR--------LFVADGTTFSL--- 176
D G V GVDV RL R+ L+K LG LF DG FS+
Sbjct: 242 DDGLVVGVDVNLSRLYMTRSTLKKQQQQQQQQLGGTADTQSSLPVCLFAGDGCHFSMESA 301
Query: 177 -APLRLL---LDPGSCNSVLQEK--DDTFREWTSRIPWKERKRAVKARENAASKAIVRSE 230
A L L +D G+ + ++ + T+ + K + A A S S
Sbjct: 302 AAALDLTGSAVDAGTGLTKVERRRLQRQHNATTTTVGSKRGRLASGAAACVVSHETDSSP 361
Query: 231 HPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSS-------------GYDKVLVDAECTHD 277
P +++ + + + +++ C+S+ + + +D+VLVDAEC+HD
Sbjct: 362 PPTVVYA--PAHMRAIVAAWLHEKACDSQAADALTTSPSQPQPQPLLFDRVLVDAECSHD 419
Query: 278 GSIKHIQ 284
GS+ H+Q
Sbjct: 420 GSVAHMQ 426
>gi|340052919|emb|CCC47205.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 493
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 118/272 (43%), Gaps = 43/272 (15%)
Query: 37 STPRYIRLKTGNEAD---------------LEEIEAEL---KCKLEKVVWLSGFY--SLP 76
S PRY+R+++G E + +L + K+ V WL Y S+P
Sbjct: 44 SVPRYVRVRSGFPLQDGGPAGPISKVIDRICEGVAVDLGVSRSKVNVVSWLPIPYCVSVP 103
Query: 77 PDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSG 136
I S ++ G I +DAAS AAV AL G+ V D+C +PG KL + D +G G
Sbjct: 104 RGASIVRSKLHRSGAISAMDAASMAAVVALRPRRGEIVWDVCCSPGMKLSFMADAVGTKG 163
Query: 137 SVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKD 196
G D++ RL R++L+++ + + C + VADG F + V +
Sbjct: 164 LAVGTDISVDRLFVARSVLKRHGIHNAC-ILVADGKLFQAKAAAEAVGAEVGTLVKYGHN 222
Query: 197 DTFREWTSRIPWKERKRAVKARENAASKAIVRSEH-----PELIFYGRRSGIVGLTKEEI 251
+ +E +R + R+ S +VR P I R + G E
Sbjct: 223 G--------LSAREERRLRQCRKRWHSGDLVRGSERADVAPVYITEAVRERLAGFYGEA- 273
Query: 252 YQSVCNSEVSSSGYDKVLVDAECTHDGSIKHI 283
C +D+VLVDAEC+HDGS+ H+
Sbjct: 274 -DGCCR-------FDRVLVDAECSHDGSLAHL 297
>gi|397622899|gb|EJK66827.1| hypothetical protein THAOC_12211, partial [Thalassiosira oceanica]
Length = 286
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 77/164 (46%), Gaps = 43/164 (26%)
Query: 40 RYIRLKTGNEAD--LEEIEAELKCK-------------LEKVVWLSG------FYSLPPD 78
RY+RL + D LE +++E++ L V WL F+++P +
Sbjct: 6 RYVRLNPRFDRDETLELLKSEIEASNTTTVDNEDEVDFLISVPWLRSSQHGFEFFAIPEE 65
Query: 79 IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDH----------------------VLD 116
+ S +++ G+IYG+DA SGAAV+AL D VLD
Sbjct: 66 FGLNKSESFQSGRIYGMDATSGAAVAALLFDMFDRDKKDADGKGCESVKDRPAKTLRVLD 125
Query: 117 LCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
+C APG KLCM+ D+ + V GVD++ R+ C+ ++ KY
Sbjct: 126 MCCAPGLKLCMLADLAPRNSLVEGVDISAQRMDLCKKIVTKYQF 169
>gi|378756003|gb|EHY66028.1| hypothetical protein NERG_00724 [Nematocida sp. 1 ERTm2]
Length = 320
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
+ + +S P D KI+ + Y +GKI + S A+ L I+ +LD+C APG KL
Sbjct: 33 YSAKIFSYPRDYKISNTKEYIEGKILSMSLWSIIAIDHLEINENSKILDMCCAPGMKLVY 92
Query: 128 ILDIIGDS--------GSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL 179
++ S G++TG+D++R RL+ ++L+QKY + + RL + D +F P+
Sbjct: 93 AGLLMQASAPAGKQIYGTITGIDISRSRLSITKSLIQKYKVPN-VRLLLGDSASFISTPV 151
>gi|344211568|ref|YP_004795888.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula hispanica ATCC
33960]
gi|343782923|gb|AEM56900.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula hispanica ATCC
33960]
Length = 303
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 13/175 (7%)
Query: 39 PRYIRLKTGNEADLEEIE---AELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGI 95
P +R+ T +A +E + A+ E V W G + LP D A + Y G I+G
Sbjct: 26 PSAVRVNT-IKASVERVRTALADADIAYEPVDWHDGLFVLPEDSPGA-NWPYFHGWIHGQ 83
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
+ S + L+ G+ V D CAAPG+K + +I D+G V D R++A RT
Sbjct: 84 EEVSVIPATVLDPQPGERVWDACAAPGSKTTQLAALIEDTGEVVATDNNLGRISALRTNT 143
Query: 156 QKYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
++ + DG SL P R L+D P SC +++ DT +WT
Sbjct: 144 ERLG-ATTVAVTHEDGRNHSLKPFGGEGYDRALVDVPCSCEGTIRKNPDTLEDWT 197
>gi|387595719|gb|EIJ93342.1| hypothetical protein NEPG_01684 [Nematocida parisii ERTm1]
Length = 320
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 97/225 (43%), Gaps = 56/225 (24%)
Query: 72 FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLC---MI 128
+S P D +I+ + Y +I + S AV+ L I VLD+C APG KL ++
Sbjct: 38 IFSYPSDYRISYTEEYINRQILSMSLWSIIAVNLLEIERSSKVLDMCCAPGMKLVYSGLL 97
Query: 129 LDIIG-----DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLL 183
LD +GS+TG+D++R RL+ ++L+ KY + + RL + D + F+ P+
Sbjct: 98 LDSANYNNSTKTGSITGIDISRSRLSIAKSLVLKYKVPN-VRLVLGDTSCFTSPPI---- 152
Query: 184 DPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYG----R 239
IP K V+ +E + PE +Y R
Sbjct: 153 ----------------------IPASLDK--VRNKEGVCRCGGISETPPEKAYYTSTNLR 188
Query: 240 RSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQ 284
R G + ++ YD++LVD EC+ ++K++Q
Sbjct: 189 RIGHRHIPQK---------------YDRILVDPECSQTSTVKYMQ 218
>gi|387594080|gb|EIJ89104.1| hypothetical protein NEQG_00923 [Nematocida parisii ERTm3]
Length = 320
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 56/225 (24%)
Query: 72 FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLC---MI 128
+S P D +I+ + Y +I + S AV+ L I VLD+C APG KL ++
Sbjct: 38 IFSYPSDYRISYTEEYINRQILSMSLWSIIAVNLLEIERSSKVLDMCCAPGMKLVYSGLL 97
Query: 129 LDIIG-----DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLL 183
LD ++GS+TG+D++R RL+ ++L+ KY + + RL + D + F+ P+
Sbjct: 98 LDSANYNNSTETGSITGIDISRSRLSIAKSLVLKYKVPN-VRLVLGDTSCFTSPPI---- 152
Query: 184 DPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYG----R 239
++ L E V+ +E + PE +Y R
Sbjct: 153 ----ISASLDE--------------------VRNKEGVCRCGGISETPPEKAYYTSTNLR 188
Query: 240 RSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGSIKHIQ 284
R G + ++ YD++LVD EC+ ++K++Q
Sbjct: 189 RIGHRHIPQK---------------YDRILVDPECSQTSTVKYMQ 218
>gi|257388869|ref|YP_003178642.1| RNA methylase [Halomicrobium mukohataei DSM 12286]
gi|257171176|gb|ACV48935.1| RNA methylase, NOL1/NOP2/sun family [Halomicrobium mukohataei DSM
12286]
Length = 305
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 63 LEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPG 122
+E+ W G LP D + + Y G IYG + S V L G+ + D CAAPG
Sbjct: 52 VERTDWHEGLLELPDD-QPGANWPYFHGWIYGQEEVSAVPVRVLGPEPGERIWDACAAPG 110
Query: 123 AKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL--- 179
+K I GD G V D RL+A RT ++ + + D SL P
Sbjct: 111 SKTSQIAARQGDDGVVVATDSNLGRLSALRTNTEQLGI-TSVAVTHEDARNHSLKPFGDD 169
Query: 180 ------RLLLD-PGSCNSVLQEKDDTFREWT 203
R L+D P SC +++ DT EWT
Sbjct: 170 DSAEYDRALVDVPCSCEGTVRKNPDTLDEWT 200
>gi|448688658|ref|ZP_21694395.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula japonica DSM 6131]
gi|445778528|gb|EMA29470.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula japonica DSM 6131]
Length = 303
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 13/175 (7%)
Query: 39 PRYIRLKTGNEADLEEIE---AELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGI 95
P +R+ T +A +E + AE + V W G + LP D A + Y QG I+G
Sbjct: 26 PSAVRVNT-IKATVERVRTALAEADIAHDPVDWHDGLFVLPEDSPGA-NWPYFQGWIHGQ 83
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
+ S L+ G+ V D CAAPG+K + ++ D+G + D R++A RT
Sbjct: 84 EEVSVIPAEVLDPQPGERVWDACAAPGSKTTQLAALMDDTGELVATDNNLGRISALRTNT 143
Query: 156 QKYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
++ + DG SL P R L+D P SC +++ DT +WT
Sbjct: 144 ERLG-ATTVAVTHEDGRNHSLKPFGGEGYDRALVDVPCSCEGTIRKNPDTLEDWT 197
>gi|448470216|ref|ZP_21600413.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum kocurii JCM
14978]
gi|445808294|gb|EMA58366.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum kocurii JCM
14978]
Length = 316
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/159 (31%), Positives = 71/159 (44%), Gaps = 9/159 (5%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAG 111
+ E AE E V W G + LP D + Y G +G + S AL+ G
Sbjct: 41 VREAFAEEGVAYEAVDWHDGLFRLP-DGNPGGNWPYVHGWTHGQEEVSVLPGLALDPQPG 99
Query: 112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+ V D CAAPG+K I D +GD G+V D RL+A R ++ + + + D
Sbjct: 100 ERVWDACAAPGSKTTQIADAMGDEGTVVANDNNLGRLSALRHNAERLGITNAI-VTNQDA 158
Query: 172 TTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
FS+ PL R L+D P SC ++ D +WT
Sbjct: 159 RNFSMKPLAFDEFDRALVDAPCSCEGTCRKNPDVVDQWT 197
>gi|448436000|ref|ZP_21587016.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum
tebenquichense DSM 14210]
gi|445683160|gb|ELZ35563.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum
tebenquichense DSM 14210]
Length = 321
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 71/161 (44%), Gaps = 9/161 (5%)
Query: 50 ADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNIS 109
A + E E E V W G + LP D + Y G +G + S AL+
Sbjct: 39 ARVREAFDEAGVAYEAVDWHDGLFRLP-DGNPGGNWPYVHGWTHGQEEVSVLPGLALDPR 97
Query: 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA 169
G+ V D CAAPG+K I D +GD G+V D RL+A R ++ + + +
Sbjct: 98 PGERVWDACAAPGSKTTQIADAMGDEGTVVANDNNLGRLSALRHNAERLGITNTV-VTNQ 156
Query: 170 DGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
D FSL PL R L+D P SC ++ D +WT
Sbjct: 157 DARNFSLKPLAFDEFDRALVDAPCSCEGTCRKNPDVLDQWT 197
>gi|448630650|ref|ZP_21673230.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula vallismortis ATCC
29715]
gi|445755683|gb|EMA07066.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula vallismortis ATCC
29715]
Length = 303
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 58 ELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDL 117
E + V W G + LP D A + Y G I+G + S + L+ G+ V D
Sbjct: 47 EADIAYDPVDWHDGLFVLPEDSPGA-NWPYFHGWIHGQEEVSVIPATVLDPQPGERVWDA 105
Query: 118 CAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA 177
CAAPG+K + ++ D+G V D R++A RT ++ + DG SL
Sbjct: 106 CAAPGSKTTQLAALMDDTGEVVATDNNLGRISALRTNTERLG-ATTVAVTHEDGRNHSLK 164
Query: 178 PL------RLLLD-PGSCNSVLQEKDDTFREWT 203
P R L+D P SC +++ DT +WT
Sbjct: 165 PFGGEGYDRALVDVPCSCEGTIRKNPDTLEDWT 197
>gi|448666899|ref|ZP_21685544.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula amylolytica JCM
13557]
gi|445772030|gb|EMA23086.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula amylolytica JCM
13557]
Length = 303
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 13/175 (7%)
Query: 39 PRYIRLKTGNEADLEEIE---AELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGI 95
P +R+ T +A +E + A+ + V W G + LP D A + Y G I+G
Sbjct: 26 PSAVRVNT-IKASVERVRTALADADIAYDPVDWHDGLFVLPEDSPGA-NWPYFHGWIHGQ 83
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
+ S + L+ G+ V D CAAPG+K + ++ D+G V D R++A RT
Sbjct: 84 EEVSVIPATVLDPQPGERVWDACAAPGSKTTQLAALMEDTGEVVATDNNLGRISALRTNT 143
Query: 156 QKYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
++ + DG SL P R L+D P SC +++ DT +WT
Sbjct: 144 ERLG-ATTVAVTHEDGRNHSLKPFGGEEYDRALVDVPCSCEGTIRKNPDTLEDWT 197
>gi|448528893|ref|ZP_21620273.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum hochstenium
ATCC 700873]
gi|445710341|gb|ELZ62160.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum hochstenium
ATCC 700873]
Length = 321
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 70/161 (43%), Gaps = 9/161 (5%)
Query: 50 ADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNIS 109
A + E E E V W G + LP D + Y G +G + S AL+
Sbjct: 39 ARVREAFDEAGVAYEAVDWHDGLFRLP-DGNPGGNWPYVHGWTHGQEEVSALPGLALDPR 97
Query: 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA 169
G+ V D CAAPG+K I D + D G+V D RL+A R ++ + + +
Sbjct: 98 PGERVWDACAAPGSKTTQIADAMDDEGTVVANDNNLGRLSALRHNAERLGITNAV-VTNQ 156
Query: 170 DGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
D FSL PL R L+D P SC ++ D EWT
Sbjct: 157 DARNFSLKPLAFDEFDRALVDAPCSCEGTCRKNPDVLDEWT 197
>gi|55377492|ref|YP_135342.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula marismortui ATCC
43049]
gi|55230217|gb|AAV45636.1| tRNA and rRNA cytosine-C5-methylases [Haloarcula marismortui ATCC
43049]
Length = 318
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 13/175 (7%)
Query: 39 PRYIRLKTGNEADLEEIE---AELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGI 95
P IR+ T +A +E + A+ + V W G + LP D A + Y G I+G
Sbjct: 41 PSAIRVNT-IKATVERVRTALADADIAYDPVDWHDGLFVLPEDSPGA-NWPYFHGWIHGQ 98
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
+ S + L+ G+ V D CAAPG+K + ++ D+G V D R++A RT
Sbjct: 99 EEVSVIPATVLDPQPGERVWDACAAPGSKTTQLAALMEDTGEVVATDNNLGRISALRTNT 158
Query: 156 QKYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
++ + DG SL P R L+D P SC +++ DT +W+
Sbjct: 159 ERLG-ATTVAVTHEDGRNHSLKPFDGEGYDRALVDVPCSCEGTIRKNPDTLEDWS 212
>gi|448640022|ref|ZP_21677170.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula sinaiiensis ATCC
33800]
gi|445762549|gb|EMA13770.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula sinaiiensis ATCC
33800]
Length = 303
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 13/175 (7%)
Query: 39 PRYIRLKTGNEADLEEIE---AELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGI 95
P IR+ T +A +E + A+ + V W G + LP D A + Y G I+G
Sbjct: 26 PSAIRVNT-IKATVERVRTALADADIAYDPVDWHDGLFVLPEDSPGA-NWPYFHGWIHGQ 83
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
+ S + L+ G+ V D CAAPG+K + ++ D+G V D R++A RT
Sbjct: 84 EEVSVIPATVLDPQPGERVWDACAAPGSKTTQLAALMDDTGEVVATDNNLGRISALRTNT 143
Query: 156 QKYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
++ + DG SL P R L+D P SC +++ DT +W+
Sbjct: 144 ERLG-ATTVAVTHEDGRNHSLKPFGGEGYDRALVDVPCSCEGTIRKNPDTLEDWS 197
>gi|448656985|ref|ZP_21682524.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula californiae ATCC
33799]
gi|445763027|gb|EMA14231.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula californiae ATCC
33799]
Length = 303
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 13/175 (7%)
Query: 39 PRYIRLKTGNEADLEEIE---AELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGI 95
P IR+ T +A +E + A+ + V W G + LP D A + Y G I+G
Sbjct: 26 PSAIRVNT-IKATVERVRTALADADIAYDPVDWHDGLFVLPEDSPGA-NWPYFHGWIHGQ 83
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
+ S + L+ G+ V D CAAPG+K + ++ D+G V D R++A RT
Sbjct: 84 EEVSVIPATVLDPQPGERVWDACAAPGSKTTQLAALMEDTGEVVATDNNLGRISALRTNT 143
Query: 156 QKYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
++ + DG SL P R L+D P SC +++ DT +W+
Sbjct: 144 ERLG-ATTVAVTHEDGRNHSLKPFGGEGYDRALVDVPCSCEGTIRKNPDTLEDWS 197
>gi|222479906|ref|YP_002566143.1| RNA methylase, NOL1/NOP2/sun family [Halorubrum lacusprofundi ATCC
49239]
gi|222452808|gb|ACM57073.1| RNA methylase, NOL1/NOP2/sun family [Halorubrum lacusprofundi ATCC
49239]
Length = 314
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 75/174 (43%), Gaps = 11/174 (6%)
Query: 39 PRYIRLK--TGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGID 96
P +R+ + A + E E E V W G + LP D + Y G +G +
Sbjct: 26 PSVVRVNEMAASPARVREAFDEEGVAYEPVDWHDGLFRLP-DGNPGGNWPYVHGWTHGQE 84
Query: 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156
S AL+ G+HV D CAAPG+K I D + D G+V D RL+A R +
Sbjct: 85 EVSVLPGLALDPQPGEHVWDACAAPGSKTTQIADAMNDEGTVVANDNNLGRLSALRHNAE 144
Query: 157 KYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
+ + + + D FS PL R L+D P SC ++ D +WT
Sbjct: 145 RLGITNAI-VTNQDARNFSTKPLAFDEFDRALVDAPCSCEGTCRKNLDVVDQWT 197
>gi|300711849|ref|YP_003737663.1| tRNA and rRNA cytosine-C5-methylase [Halalkalicoccus jeotgali B3]
gi|448295539|ref|ZP_21485603.1| tRNA and rRNA cytosine-C5-methylase [Halalkalicoccus jeotgali B3]
gi|299125532|gb|ADJ15871.1| tRNA and rRNA cytosine-C5-methylase [Halalkalicoccus jeotgali B3]
gi|445583638|gb|ELY37967.1| tRNA and rRNA cytosine-C5-methylase [Halalkalicoccus jeotgali B3]
Length = 302
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 8/131 (6%)
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVT 139
K + Y G I+G + S + L+ G+ VLD CAAPG K I ++ D+G V
Sbjct: 68 KPGNTWPYFHGWIHGQEEVSSLPATVLSPDPGERVLDACAAPGGKTAQIAALMDDTGLVV 127
Query: 140 GVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVL 192
D RL+A R ++ L + + D FSL P+ R+L+D P SC ++
Sbjct: 128 ANDNNLGRLSALRFNAERLGLTN-VAVTRQDARNFSLKPVGLDAFDRVLVDAPCSCEGII 186
Query: 193 QEKDDTFREWT 203
+++ DT EW+
Sbjct: 187 RKRPDTLDEWS 197
>gi|345304018|ref|YP_004825920.1| RNA methylase, NOL1/NOP2/sun family [Rhodothermus marinus
SG0.5JP17-172]
gi|345113251|gb|AEN74083.1| RNA methylase, NOL1/NOP2/sun family [Rhodothermus marinus
SG0.5JP17-172]
Length = 321
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 80/169 (47%), Gaps = 13/169 (7%)
Query: 14 LPEAFLDFLKENGLDPS----VYSAADSTPRYIRLKTGN-EADLEEIEAELKCK---LEK 65
LPEAFL+ L+ L P + AA PR + + + D + ++A L+ +
Sbjct: 5 LPEAFLERLRR--LVPPDRLPMVEAAFREPRAMAFRVNTLKVDRDTVQAALEAEGLHPRP 62
Query: 66 VVWLSGFYSLPPDIKIA--TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
V W + + +PP+ + A S Y++ IY D AS L VLDLCAAPG+
Sbjct: 63 VAWYADAFQVPPEARAALLESRPYRERWIYVQDLASMLPPLVLAPEPDARVLDLCAAPGS 122
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
K + ++ G + V+V R R + +Q Y + RL++ DGT
Sbjct: 123 KTLQLACLMQGRGEIAAVEVVRPRFYRLKANVQAYGAPN-VRLYLQDGT 170
>gi|302871979|ref|YP_003840615.1| RNA methylase [Caldicellulosiruptor obsidiansis OB47]
gi|302574838|gb|ADL42629.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
obsidiansis OB47]
Length = 455
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 12 LPLPEAFLDFLKE---NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVW 68
+ LPE FL +KE + + + + R+ T + +EE ++ + EKV W
Sbjct: 1 MNLPEEFLSKMKEILKEEFEQFIKIYEFDSYKGFRVNTA-KVSVEEFVEKMGIEFEKVPW 59
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
+ +IK++ Y G IY + ++ V AL++ G+ VLDLCAAPG K I
Sbjct: 60 CKDGFYYTEEIKLSKHPYYFAGLIYIQEPSAMFPVEALDVKEGEKVLDLCAAPGGKSIQI 119
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF-----VAD--GTTFSLAPLRL 181
+G +G + DV R+ A ++ L + L +A+ G F ++
Sbjct: 120 AARLGQNGLLVSNDVKPTRIKALVKNVENLGLTNVVVLNNKPKEIAESYGAYFD----KI 175
Query: 182 LLD-PGSCNSVLQEKDDTFREWTSRIPWK 209
L+D P S + ++ T ++WTS P K
Sbjct: 176 LVDAPCSGEGMFRKDPTTAKKWTSNHPEK 204
>gi|70608021|ref|YP_256891.1| tRNA and rRNA cytosine-C5-methylase [Sulfolobus acidocaldarius DSM
639]
gi|449068267|ref|YP_007435349.1| tRNA and rRNA cytosine-C5-methylase [Sulfolobus acidocaldarius N8]
gi|449070586|ref|YP_007437667.1| tRNA and rRNA cytosine-C5-methylase [Sulfolobus acidocaldarius
Ron12/I]
gi|68568669|gb|AAY81598.1| tRNA and rRNA cytosine-C5-methylase [Sulfolobus acidocaldarius DSM
639]
gi|449036775|gb|AGE72201.1| tRNA and rRNA cytosine-C5-methylase [Sulfolobus acidocaldarius N8]
gi|449039094|gb|AGE74519.1| tRNA and rRNA cytosine-C5-methylase [Sulfolobus acidocaldarius
Ron12/I]
Length = 350
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I + +K+ KI D AS A V AL DH+LDL +APG K+ I+ + + +
Sbjct: 145 ITNTTEFKENKIIVQDKASMAVVEALKPEPNDHILDLASAPGIKVSQIMQLTENKAKLIV 204
Query: 141 VDVARHRLAACRTLLQKYALG-DRCRLFVADGTTFSL 176
DV + RL R L +K+ + DR L + D ++ ++
Sbjct: 205 ADVDKERLEKERLLFKKFGVNVDRLELLLVDSSSLAI 241
>gi|448439541|ref|ZP_21588105.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum
saccharovorum DSM 1137]
gi|445691075|gb|ELZ43270.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum
saccharovorum DSM 1137]
Length = 316
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 74/174 (42%), Gaps = 11/174 (6%)
Query: 39 PRYIRLK--TGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGID 96
P +R+ + A + E E E V W G + LP D + Y G +G +
Sbjct: 26 PSVVRVNEMAASPARVREAFDEEGVAYEPVDWHDGLFRLP-DGNPGGNWPYVHGWTHGQE 84
Query: 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156
S AL+ GD V D CAAPG+K I D + D G+V D RL+A R +
Sbjct: 85 EVSVLPGLALDPRPGDRVWDACAAPGSKTTQIADAMDDEGTVVANDNNLGRLSALRHNAE 144
Query: 157 KYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
+ + + + D FS PL R L+D P SC ++ D +WT
Sbjct: 145 RLGITNAI-VTNQDARNFSTKPLAFDEFDRALVDAPCSCEGTCRKNPDVVDQWT 197
>gi|448512219|ref|ZP_21616333.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum distributum
JCM 9100]
gi|448520842|ref|ZP_21618175.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum distributum
JCM 10118]
gi|445694539|gb|ELZ46664.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum distributum
JCM 9100]
gi|445702978|gb|ELZ54917.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum distributum
JCM 10118]
Length = 309
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 69/161 (42%), Gaps = 9/161 (5%)
Query: 50 ADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNIS 109
A + E E E V W G + LP D + Y G +G + S AL+
Sbjct: 39 ARVREAFDEAGVAYEPVDWHDGLFRLP-DGNPGGNWPYVHGWTHGQEEVSVLPTLALDPR 97
Query: 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA 169
G+ V D CAAPG+K I D + D G+V D RL+A R ++ + + +
Sbjct: 98 PGERVWDACAAPGSKTTQIADAMDDEGTVVANDNNLGRLSALRHNAERLGITNAI-VTNQ 156
Query: 170 DGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
D FS PL R L+D P SC ++ D +WT
Sbjct: 157 DARNFSTKPLGFDEFDRALVDAPCSCEGTCRKNPDVLDQWT 197
>gi|448424074|ref|ZP_21582200.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum terrestre
JCM 10247]
gi|445682739|gb|ELZ35152.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum terrestre
JCM 10247]
Length = 309
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 69/161 (42%), Gaps = 9/161 (5%)
Query: 50 ADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNIS 109
A + E E E V W G + LP D + Y G +G + S AL+
Sbjct: 39 ARVREAFDEAGVAYEPVDWHDGLFRLP-DGNPGGNWPYVHGWTHGQEEVSVLPTLALDPR 97
Query: 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA 169
G+ V D CAAPG+K I D + D G+V D RL+A R ++ + + +
Sbjct: 98 PGERVWDACAAPGSKTTQIADAMDDEGTVVANDNNLGRLSALRHNAERLGITNAI-VTNQ 156
Query: 170 DGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
D FS PL R L+D P SC ++ D +WT
Sbjct: 157 DARNFSTKPLAFDEFDRALVDAPCSCEGTCRKNPDVLDQWT 197
>gi|448448406|ref|ZP_21591219.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum litoreum
JCM 13561]
gi|445814822|gb|EMA64780.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum litoreum
JCM 13561]
Length = 309
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 69/161 (42%), Gaps = 9/161 (5%)
Query: 50 ADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNIS 109
A + E E E V W G + LP D + Y G +G + S AL+
Sbjct: 39 ARVREAFDEAGVAYEPVDWHDGLFRLP-DGNPGGNWPYVHGWTHGQEEVSVLPTLALDPR 97
Query: 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA 169
G+ V D CAAPG+K I D + D G+V D RL+A R ++ + + +
Sbjct: 98 PGERVWDACAAPGSKTTQIADAMDDEGTVVANDNNLGRLSALRHNAERLGITNAI-VTNQ 156
Query: 170 DGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
D FS PL R L+D P SC ++ D +WT
Sbjct: 157 DARNFSTKPLAFDEFDRALVDAPCSCEGTCRKNPDVLDQWT 197
>gi|448502993|ref|ZP_21612857.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum coriense
DSM 10284]
gi|445693395|gb|ELZ45547.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum coriense
DSM 10284]
Length = 315
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 66/153 (43%), Gaps = 9/153 (5%)
Query: 58 ELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDL 117
E E V W G + LP D + Y G +G + S AL+ G+ V D
Sbjct: 47 ESGVAYEPVGWHDGLFRLP-DGNPGGNWPYVHGWTHGQEEVSVLPTLALDPEPGERVWDA 105
Query: 118 CAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA 177
CAAPG+K I D + D G+V D RL+A R ++ + + + D FS
Sbjct: 106 CAAPGSKTTQIADAMDDEGTVVANDNNLGRLSALRHNAERLGITNAI-VTNQDARNFSTK 164
Query: 178 PL------RLLLD-PGSCNSVLQEKDDTFREWT 203
PL R L+D P SC ++ D +WT
Sbjct: 165 PLAFDEFDRALVDAPCSCEGTCRKNPDVLDQWT 197
>gi|335438273|ref|ZP_08561021.1| RNA methylase, NOL1/NOP2/sun family protein [Halorhabdus tiamatea
SARL4B]
gi|334892467|gb|EGM30700.1| RNA methylase, NOL1/NOP2/sun family protein [Halorhabdus tiamatea
SARL4B]
Length = 302
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 82/188 (43%), Gaps = 15/188 (7%)
Query: 28 DPSVYSAADSTP-----RYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIA 82
DP+ + +A P R LKT E +E E E V W G LP D
Sbjct: 13 DPAAFRSACRRPLPSVVRVNTLKTTVERAKAALETE-GIAYEAVEWHDGLLRLPDD-SPG 70
Query: 83 TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVD 142
++ Y QG ++G + S L+ S GD V D AAPG+K + ++ D G++ D
Sbjct: 71 SNWPYVQGWLHGQEEVSALPPVVLDPSPGDRVWDATAAPGSKTTQLAALMHDEGTIVATD 130
Query: 143 VARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEK 195
RL+A R+ ++ + + + D SL P L+D P SC +++
Sbjct: 131 NNLGRLSALRSNAERLGVTNLA-VTNEDARNHSLKPFDGAQYDHALVDVPCSCEGTIRKN 189
Query: 196 DDTFREWT 203
DT EW+
Sbjct: 190 PDTLDEWS 197
>gi|448478964|ref|ZP_21603970.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum arcis JCM
13916]
gi|445822794|gb|EMA72556.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum arcis JCM
13916]
Length = 309
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 66/153 (43%), Gaps = 9/153 (5%)
Query: 58 ELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDL 117
E E V W G + LP D + Y G +G + S AL+ G+ V D
Sbjct: 47 EAGVAYEPVDWHDGLFRLP-DGNPGGNWPYVHGWTHGQEEVSVLPTLALDPRPGERVWDA 105
Query: 118 CAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA 177
CAAPG+K I D + D G+V D RL+A R ++ + + + D FS
Sbjct: 106 CAAPGSKTTQIADAMDDEGTVVANDNNLGRLSALRHNAERLGITNAI-VTNQDARNFSTK 164
Query: 178 PL------RLLLD-PGSCNSVLQEKDDTFREWT 203
PL R L+D P SC ++ D +WT
Sbjct: 165 PLAFDEFDRALVDAPCSCEGTCRKNPDVLDQWT 197
>gi|146296789|ref|YP_001180560.1| putative RNA methylase [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145410365|gb|ABP67369.1| putative RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 455
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 97/209 (46%), Gaps = 16/209 (7%)
Query: 12 LPLPEAFLDFLKE---NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVW 68
+ LPE FL +KE + + V + + R+ T + ++E + + EKV W
Sbjct: 1 MNLPEEFLSKMKEILKDEFEDFVKVYDFDSYKGFRVNTA-KVSVDEFMKRIGIEFEKVPW 59
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
+ + +I+++ Y G IY + ++ V AL++ G+ VLDLCAAPG K I
Sbjct: 60 CEDGFYINDEIRLSKHPYYFAGLIYIQEPSAMFPVEALDVKEGEKVLDLCAAPGGKTIQI 119
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF-----VAD--GTTFSLAPLRL 181
IG +G + DV R+ A ++ L + L +A+ G F ++
Sbjct: 120 AAKIGPNGMLVSNDVKPTRIKALVKNVENLGLTNVVILNNKPKEIAESYGAYFD----KI 175
Query: 182 LLD-PGSCNSVLQEKDDTFREWTSRIPWK 209
L+D P S + ++ + ++WTS P K
Sbjct: 176 LVDAPCSGEGMFRKDPTSAKKWTSNHPQK 204
>gi|345004833|ref|YP_004807686.1| RNA methylase [halophilic archaeon DL31]
gi|344320459|gb|AEN05313.1| RNA methylase, NOL1/NOP2/sun family [halophilic archaeon DL31]
Length = 318
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 15/175 (8%)
Query: 39 PRYIRLKTGNEADLEEIEAELK---CKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGI 95
P +R+ + +AD E + L E V W LP + T+ AY G ++G
Sbjct: 26 PSVVRVNS-IKADPERVRTALDEEGVTYEPVDWHDRLLKLP-EGSPGTNWAYVHGWLHGQ 83
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
+ S AL+ GD VLD CAAPG+K C + D++ D+G + G D R++A R
Sbjct: 84 EEVSALPALALDPDPGDRVLDSCAAPGSKTCHLADLMDDTGVLVGNDNNLGRISALRHNA 143
Query: 156 QKYALGDRCRLFVA--DGTTFSLAPLR----LLLD-PGSCNSVLQEKDDTFREWT 203
++ + + L V D TF+L + ++ D P SC ++ D WT
Sbjct: 144 ERLGVSN---LVVTNRDARTFALDGVDEFDGVVADVPCSCEGTCRKNPDALETWT 195
>gi|357518007|ref|XP_003629292.1| hypothetical protein MTR_8g075450 [Medicago truncatula]
gi|355523314|gb|AET03768.1| hypothetical protein MTR_8g075450 [Medicago truncatula]
Length = 169
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/39 (74%), Positives = 33/39 (84%)
Query: 123 AKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG 161
AK+CMILD++GD GSVTGVD ARHRLA C T+LQKY G
Sbjct: 40 AKVCMILDLLGDLGSVTGVDAARHRLAVCITILQKYKAG 78
>gi|448678053|ref|ZP_21689243.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula argentinensis DSM
12282]
gi|445773728|gb|EMA24761.1| tRNA and rRNA cytosine-C5-methylase [Haloarcula argentinensis DSM
12282]
Length = 303
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 79/175 (45%), Gaps = 13/175 (7%)
Query: 39 PRYIRLKTGNEADLEEIE---AELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGI 95
P +R+ T +A +E + A+ + V W G + LP D A + Y G I+G
Sbjct: 26 PSAVRVNT-IKATVERVRTALADADIAYDPVDWHDGLFVLPEDSPGA-NWPYFHGWIHGQ 83
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
+ S + L+ G+ V D CAAPG+K + + D+G V D R++A RT
Sbjct: 84 EEVSVIPATVLDPQPGERVWDACAAPGSKTTQLAARMEDAGEVVATDNNLGRISALRTNT 143
Query: 156 QKYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
++ + DG SL P R L+D P SC +++ DT +W+
Sbjct: 144 ERLG-ATTVAVTHEDGRNHSLKPFGGEGYDRALVDVPCSCEGTIRKNPDTLEDWS 197
>gi|312127718|ref|YP_003992592.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
hydrothermalis 108]
gi|311777737|gb|ADQ07223.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
hydrothermalis 108]
Length = 455
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 12 LPLPEAFLDFLKE---NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVW 68
+ LPE FL +KE + D + + + R+ T + +EE ++ + EKV W
Sbjct: 1 MNLPEEFLSKMKEILNDEFDQFIKVYDFDSYKGFRVNTA-KVSVEEFIEKMGIEFEKVPW 59
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
+ +I+++ Y G +Y + ++ V AL++ G+ VLDLCAAPG K I
Sbjct: 60 CKDGFYYTEEIRLSKHPYYFAGLVYIQEPSAMFPVEALDVKEGEKVLDLCAAPGGKSIQI 119
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF-----VAD--GTTFSLAPLRL 181
+G +G + DV R+ A ++ L + L +A+ G F ++
Sbjct: 120 AARLGQNGLLVSNDVKPSRIKALVKNVENLGLTNVVILNNKPKEIAESYGAYFD----KI 175
Query: 182 LLD-PGSCNSVLQEKDDTFREWTSRIPWK 209
L+D P S + ++ ++WTS P K
Sbjct: 176 LVDAPCSGEGMFRKDPTAAKKWTSNHPEK 204
>gi|344995893|ref|YP_004798236.1| RNA methylase [Caldicellulosiruptor lactoaceticus 6A]
gi|343964112|gb|AEM73259.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
lactoaceticus 6A]
Length = 455
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 16/209 (7%)
Query: 12 LPLPEAFLDFLKE---NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVW 68
+ LPE FL +KE D + + + R+ T + +EE ++ + EKV W
Sbjct: 1 MNLPEEFLSKMKEILKEEFDQFIKVYDFDSYKGFRVNTA-KVSVEEFIEKMGIEFEKVPW 59
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
+ +I+++ Y G +Y + ++ V AL+I G+ VLDLCAAPG K I
Sbjct: 60 CKDGFYYTEEIRLSKHPYYFAGLVYIQEPSAMFPVEALDIKEGEKVLDLCAAPGGKSIQI 119
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF-----VAD--GTTFSLAPLRL 181
+G +G + DV R+ A ++ L + L +A+ G F ++
Sbjct: 120 AARLGQNGLLVSNDVKPSRIKALVKNVENLGLTNIVILNNKPKEIAESYGAYFD----KI 175
Query: 182 LLD-PGSCNSVLQEKDDTFREWTSRIPWK 209
L+D P S + ++ ++WTS P K
Sbjct: 176 LVDAPCSGEGMFRKDPTAAKKWTSNHPEK 204
>gi|312793398|ref|YP_004026321.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180538|gb|ADQ40708.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 455
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 16/209 (7%)
Query: 12 LPLPEAFLDFLKE---NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVW 68
+ LPE FL +KE D + + + R+ T + +EE ++ + EKV W
Sbjct: 1 MNLPEEFLSKMKEILKEEFDQFIKVYDFDSYKGFRVNTA-KVSVEEFIKKMGIEFEKVPW 59
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
+ +I+++ Y G +Y + ++ V AL+I G+ VLDLCAAPG K I
Sbjct: 60 CKDGFYYTEEIRLSKHPYYFAGLVYIQEPSAMFPVEALDIKEGEKVLDLCAAPGGKSIQI 119
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF-----VAD--GTTFSLAPLRL 181
+G +G + DV R+ A ++ L + L +A+ G F ++
Sbjct: 120 AARLGQNGLLVSNDVKPSRIKALVKNVENLGLTNIVILNNKPKEIAESYGAYFD----KI 175
Query: 182 LLD-PGSCNSVLQEKDDTFREWTSRIPWK 209
L+D P S + ++ ++WTS P K
Sbjct: 176 LVDAPCSGEGMFRKDPTAAKKWTSNHPEK 204
>gi|448474110|ref|ZP_21602078.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum aidingense
JCM 13560]
gi|445818390|gb|EMA68249.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum aidingense
JCM 13560]
Length = 310
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 74/174 (42%), Gaps = 11/174 (6%)
Query: 39 PRYIRLK--TGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGID 96
P +R+ + A + E E E V W G + LP D + Y G +G +
Sbjct: 26 PSVVRVNGIAASPARVREAFDEEGVAYEPVEWHDGLFRLP-DGNPGGNWPYVHGWTHGQE 84
Query: 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156
S AL+ G+ V D CAAPG+K I D + D G+V D RL+A R +
Sbjct: 85 EVSVLPGLALDPQPGERVWDACAAPGSKTTQIADAMDDDGTVVANDNNLGRLSALRHNAE 144
Query: 157 KYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
+ + + + D FS PL R L+D P SC ++ D +WT
Sbjct: 145 RLGVTNAI-VTNQDARNFSTKPLAFDEFDRALVDAPCSCEGTCRKNPDVVDQWT 197
>gi|313683659|ref|YP_004061397.1| fmu (sun) domain-containing protein [Sulfuricurvum kujiense DSM
16994]
gi|313156519|gb|ADR35197.1| Fmu (Sun) domain protein [Sulfuricurvum kujiense DSM 16994]
Length = 315
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 10/146 (6%)
Query: 12 LPLPEAFLDFLKENGLDPSVYSAADST---PRYIRLKTGN-EADLEEIEAELKC---KLE 64
+ LPEAF + L E + Y A T P+ + + ++ +E+EAELK E
Sbjct: 1 MSLPEAFTERL-EKIVPHERYEAIVRTFDSPKNVTFRVNTLKSTTQELEAELKAAHIPYE 59
Query: 65 KVVWLSGFYSLPPDIKIATSM--AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPG 122
+ WL G Y + P+ K+A + A+ G++Y + AS A L+ + VLDL AAPG
Sbjct: 60 SIGWLEGVYRIAPEHKLALTQTDAFYGGRLYIQNLASMIAPLLLSPQPEETVLDLAAAPG 119
Query: 123 AKLCMILDIIGDSGSVTGVDVARHRL 148
K M+ ++ ++G ++ V+ +R R
Sbjct: 120 GKTLMLAGMMQNTGWLSAVEPSRERF 145
>gi|312135035|ref|YP_004002373.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
owensensis OL]
gi|311775086|gb|ADQ04573.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
owensensis OL]
Length = 455
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 12 LPLPEAFLDFLKE---NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVW 68
+ LPE FL +KE + + + + R+ T + +EE ++ + EKV W
Sbjct: 1 MNLPEEFLSKMKEILKEEFEQFIKIYEFDSYKGFRVNTA-KVSVEEFVDKMGIEFEKVPW 59
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
+ +I+++ Y G +Y + ++ V AL++ G+ VLDLCAAPG K I
Sbjct: 60 CKDGFYYTEEIRLSKHPYYFAGLVYIQEPSAMFPVEALDVKEGEKVLDLCAAPGGKSIQI 119
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF-----VAD--GTTFSLAPLRL 181
+G +G + DV R+ A ++ L + L +A+ G F ++
Sbjct: 120 AARLGQNGLLVSNDVKPTRIKALVKNVENLGLTNVVVLNNKPKEIAESYGAYFD----KI 175
Query: 182 LLD-PGSCNSVLQEKDDTFREWTSRIPWK 209
L+D P S + ++ T ++WTS P K
Sbjct: 176 LVDAPCSGEGMFRKDPTTAKKWTSNHPEK 204
>gi|295109450|emb|CBL23403.1| NOL1/NOP2/sun family putative RNA methylase [Ruminococcus obeum
A2-162]
Length = 469
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 13/174 (7%)
Query: 53 EEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGD 112
EE E + + + W+ Y P D++ + Y+ G Y + ++ S L ++ G+
Sbjct: 51 EEFEKIVPFPVTPIPWIPNGYFYPGDVRPSFCPLYQAGLYYLQEPSAMTPASCLPVTPGE 110
Query: 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
++LDLCAAPG K + ++ SG + D++ R R LL+ L FV + T
Sbjct: 111 NILDLCAAPGGKATALGAMLNGSGLLVANDISSSR---TRALLRNIELFGIANAFVTNET 167
Query: 173 T------FSLAPLRLLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARE 219
F ++LLD P S + +++D R+WT P K + +V +E
Sbjct: 168 PAHLKNRFPEFFHKILLDAPCSGEGMFRKEDALARDWT---PEKSEELSVLQKE 218
>gi|268316267|ref|YP_003289986.1| RNA methylase [Rhodothermus marinus DSM 4252]
gi|262333801|gb|ACY47598.1| RNA methylase, NOL1/NOP2/sun family [Rhodothermus marinus DSM 4252]
Length = 321
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 90/213 (42%), Gaps = 29/213 (13%)
Query: 14 LPEAFLDFLKENGLDPS----VYSAADSTPRYI-----RLKTGNEADLEEIEAELKCKLE 64
+PEAFL L+ L P V AA PR LK +A L +EAE +
Sbjct: 5 MPEAFLARLRR--LVPPDRLPVVEAAFQEPRITAFRVNTLKADRDAVLAALEAE-GIQPR 61
Query: 65 KVVWLSGFYSLPPDIKIA--TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPG 122
V W + + +PP + A S Y IY D AS L VLDLCAAPG
Sbjct: 62 PVAWYADAFQVPPKARAALLESRPYHARWIYVQDLASMLPPLVLAPEPDARVLDLCAAPG 121
Query: 123 AKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT--------TF 174
+K + ++ G + V+V R R + +Q Y + RL++ DGT +F
Sbjct: 122 SKTLQLACLMQGRGEIAAVEVVRPRFYRLKANVQAYGAPN-VRLYLQDGTRVGRYRPESF 180
Query: 175 SLAPLRLLLD-PGSCNSVLQEKD-DTFREWTSR 205
+L+D P S D DTF W+ R
Sbjct: 181 DY----VLVDAPCSSEGRFHLSDPDTFAYWSPR 209
>gi|153812831|ref|ZP_01965499.1| hypothetical protein RUMOBE_03238 [Ruminococcus obeum ATCC 29174]
gi|149831043|gb|EDM86132.1| NOL1/NOP2/sun family protein [Ruminococcus obeum ATCC 29174]
Length = 469
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 10/158 (6%)
Query: 53 EEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGD 112
+E E + + + W+S Y P D++ + Y+ G Y + ++ S L ++ G+
Sbjct: 51 DEFERIVPFPVTPIPWISNGYFYPEDVRPSFCPLYQAGLFYLQEPSAMTPASCLPVTPGE 110
Query: 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD-- 170
+VLDLCAAPG K + ++ SG + D++ R R LL+ L FV +
Sbjct: 111 NVLDLCAAPGGKATALGAMLNGSGLLVANDISASR---ARALLRNIELFGITNAFVTNET 167
Query: 171 ----GTTFSLAPLRLLLD-PGSCNSVLQEKDDTFREWT 203
G F ++LLD P S + ++++ R+WT
Sbjct: 168 PAHLGKHFPEFFHKILLDAPCSGEGMFRKEEALARDWT 205
>gi|269839713|ref|YP_003324405.1| RNA methylase [Thermobaculum terrenum ATCC BAA-798]
gi|269791443|gb|ACZ43583.1| RNA methylase, NOL1/NOP2/sun family [Thermobaculum terrenum ATCC
BAA-798]
Length = 325
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 70/143 (48%), Gaps = 10/143 (6%)
Query: 14 LPEAFLDFLKENGLD---PSVYSAADSTPRYIRLKTGN-EADLEEIEAELKCK---LEKV 66
LP FL L+ D P V A PR + L+ AD E+ AEL+ + LE V
Sbjct: 8 LPAEFLRRLERIVPDHRYPEVLEAL-CEPRVVALRVNPLRADRREVVAELEAEGFALEPV 66
Query: 67 VWLSGFYSLPPDIK--IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAK 124
W + + L K + + AY +GKIY D AS V L G+ VLDL AAPG+K
Sbjct: 67 SWYADAFILRTGTKRELMATAAYAEGKIYLQDLASMVPVLVLAPRPGERVLDLAAAPGSK 126
Query: 125 LCMILDIIGDSGSVTGVDVARHR 147
+ ++G+SG + DV+ R
Sbjct: 127 TTQMAALMGNSGEIVANDVSPAR 149
>gi|452206544|ref|YP_007486666.1| tRNA/rRNA cytosine-C5-methylase [Natronomonas moolapensis 8.8.11]
gi|452082644|emb|CCQ35909.1| tRNA/rRNA cytosine-C5-methylase [Natronomonas moolapensis 8.8.11]
Length = 303
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 8/149 (5%)
Query: 62 KLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
+ V W G + L D S + G +YG + S AL+ G+ VLD CAAP
Sbjct: 51 EFGPVGWHDGLFRLGGDESPGNSWPFVHGWVYGQEEVSAVPALALDPDPGERVLDCCAAP 110
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL-- 179
G+K + + D G + G D RL+A R+ ++ + + + AD FSL
Sbjct: 111 GSKTTQLAARMDDRGLLVGNDNNLGRLSALRSNAERCGVTNLV-VTRADARNFSLKSFGG 169
Query: 180 ----RLLLD-PGSCNSVLQEKDDTFREWT 203
R L+D P SC +++ D +W+
Sbjct: 170 EAFDRTLVDVPCSCEGTIRKNPDALEDWS 198
>gi|418323824|ref|ZP_12935086.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pettenkoferi VCU012]
gi|365229170|gb|EHM70333.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pettenkoferi VCU012]
Length = 437
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA S ++++G I D +S L+ GDH+LD C+APG K C I +++ +G VT
Sbjct: 221 IANSDSFREGLISIQDKSSMFVAHYLDPQIGDHILDACSAPGGKACHIGELLRGTGQVTA 280
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTT-FSLAPLRLLLD-PGSCNSVLQEK 195
D+ +H++A + + K L + D TT + R+L+D P S VL+ K
Sbjct: 281 TDIHQHKIALIQENIHKLGLS-HVKAMQHDATTPYQEMYDRILVDAPCSGLGVLRHK 336
>gi|76802670|ref|YP_330765.1| rRNA methylase [Natronomonas pharaonis DSM 2160]
gi|76558535|emb|CAI50127.1| tRNA/rRNA cytosine-C5-methylase [Natronomonas pharaonis DSM 2160]
Length = 303
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 79/188 (42%), Gaps = 14/188 (7%)
Query: 28 DPSVYSAADSTP-----RYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIA 82
DP+ + A P R R+K E+ + + E E V W G + L
Sbjct: 13 DPAAFHEACERPLPSVVRVNRIKATAESVRQAFD-EAGVDYEPVDWHDGLFRLGEGESPG 71
Query: 83 TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVD 142
S + G +YG + S AL G+ VLD CAAPG+K + ++ D G + G D
Sbjct: 72 NSWPFVHGWVYGQEEVSAVPALALAPQPGERVLDCCAAPGSKTTQLAALMDDRGLLVGND 131
Query: 143 VARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEK 195
RL+A R+ ++ + + + D SL P R L+D P SC +++
Sbjct: 132 NNLGRLSALRSNAERCGVTN-IAVTRQDARNLSLKPFGGERFDRTLVDVPCSCEGTVRKN 190
Query: 196 DDTFREWT 203
D W+
Sbjct: 191 PDAVDGWS 198
>gi|347756200|ref|YP_004863763.1| ribosomal RNA small subunit methyltransferase RsmB [Candidatus
Chloracidobacterium thermophilum B]
gi|347588717|gb|AEP13246.1| ribosomal RNA small subunit methyltransferase RsmB [Candidatus
Chloracidobacterium thermophilum B]
Length = 519
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
GKIY DA S L + G VLD+CAAPG K + ++ + G++T +DV HR+A
Sbjct: 291 GKIYVQDAGSQQVARWLGVQPGQRVLDMCAAPGGKTAQLAALMQNEGTITALDVHPHRVA 350
Query: 150 ACRTLLQKYALGDR-CRLFVADGTTFSL 176
A L + LG R R +VAD T+ L
Sbjct: 351 AMEQNLAR--LGVRIARCYVADATSTHL 376
>gi|448454964|ref|ZP_21594366.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum lipolyticum
DSM 21995]
gi|445814344|gb|EMA64309.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum lipolyticum
DSM 21995]
Length = 310
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 11/174 (6%)
Query: 39 PRYIRLK--TGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGID 96
P +R+ + A + E E + V W G + LP D + Y G +G +
Sbjct: 26 PSVVRVNETAASPARVREAFDEEGVAYDPVGWHDGLFRLP-DGNPGGNWPYVHGWTHGQE 84
Query: 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156
S AL+ G+ V D CAAPG+K I D + D G+V D RL+A R +
Sbjct: 85 EVSVLPGLALDPQPGERVWDACAAPGSKTTQIADAMDDEGTVVANDNNLGRLSALRHNAE 144
Query: 157 KYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
+ + + + D FS PL R L+D P SC ++ D +WT
Sbjct: 145 RLGITNAI-VTNQDARNFSTKPLAFDEFDRALVDAPCSCEGTCRKNPDVVDQWT 197
>gi|332796458|ref|YP_004457958.1| RNA methylase [Acidianus hospitalis W1]
gi|332694193|gb|AEE93660.1| RNA methylase, NOL1/NOP2/sun family [Acidianus hospitalis W1]
Length = 335
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 20/205 (9%)
Query: 17 AFLDFLKENGL-------DPSVYSAADSTPRYIRLKTGNEADLEEIEAELK---CKLEKV 66
FLD++ E L + +YS + IR T + D E+E+ ++ KLEKV
Sbjct: 31 GFLDYMVERYLHIFRHEAEDFLYSCNFPLKKSIRCNTL-KIDCNELESRMEQKGFKLEKV 89
Query: 67 VWLSGFYSL---PPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
WL Y + PP + ++ Y QG Y AS LN S+ D VLD+ AAPG
Sbjct: 90 SWLKHGYIVKKAPPKPSLGATLEYLQGYYYIQGLASMVPAYVLNPSSSDTVLDMAAAPGG 149
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD----RCRLFVADGTTFSLAPL 179
K + I+ + G + V+ +R R+ + + + + + + R + + TT S
Sbjct: 150 KTTQLSQIMNNEGLIVAVEKSRLRVTSLLSNISRLGVRNVLLLRSDVRTLEKTTLSFD-- 207
Query: 180 RLLLDPGSCNSVLQEKDDTFREWTS 204
++LLD L +D + + TS
Sbjct: 208 KILLDAPCSGEGLIPEDQSRKTKTS 232
>gi|227890276|ref|ZP_04008081.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus johnsonii
ATCC 33200]
gi|227849090|gb|EEJ59176.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus johnsonii
ATCC 33200]
Length = 438
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 12/158 (7%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFY 73
L E LD EN + + IR+ T E+D EEI+ ELK K +
Sbjct: 152 LVEYLLDHFGENETKKILVRSNQPAANSIRM-TTKESDFEEIKEELK----KDTFSFEES 206
Query: 74 SLPPDI------KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
SL P +A + +K GKI DAA+ AV A + + VLD C+APG K
Sbjct: 207 SLTPHNLNLNKGGVAQTALFKNGKITIQDAAASLAVDAFDFKGSEQVLDACSAPGGKTVQ 266
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR 165
I + + +GSV +D+ ++L R ++ + D+ +
Sbjct: 267 IAENL-TTGSVIALDIHENKLRLVRNAAERLHVSDKVK 303
>gi|268319212|ref|YP_003292868.1| rRNA methylase [Lactobacillus johnsonii FI9785]
gi|262397587|emb|CAX66601.1| rRNA methylase [Lactobacillus johnsonii FI9785]
Length = 440
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 12/158 (7%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFY 73
L E LD EN + + IR+ T E+D EEI+ ELK K +
Sbjct: 152 LVEYLLDHFGENETKEILVRSNQPAANSIRM-TTKESDFEEIKEELK----KDTFSFEES 206
Query: 74 SLPPDI------KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
SL P +A + +K GKI DAA+ AV A + + VLD C+APG K
Sbjct: 207 SLTPHNLNLNKGGVAQTALFKNGKITIQDAAASLAVDAFDFKGSEQVLDACSAPGGKTVQ 266
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR 165
I + + +GSV +D+ ++L R ++ + D+ +
Sbjct: 267 IAENL-TTGSVIALDIHENKLRLVRNAAERLHVSDKVK 303
>gi|426402961|ref|YP_007021932.1| hypothetical protein Bdt_0965 [Bdellovibrio bacteriovorus str.
Tiberius]
gi|425859629|gb|AFY00665.1| hypothetical protein Bdt_0965 [Bdellovibrio bacteriovorus str.
Tiberius]
Length = 296
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 8/122 (6%)
Query: 92 IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAAC 151
IY +D AS AL++ GD +LD+CAAPG K ++++ GD G + D++ R
Sbjct: 82 IYIMDPASVMVARALDVQPGDRLLDMCAAPGGKSLVMIESFGDEGEIFCNDLSPERRERL 141
Query: 152 RTLLQKYALGD-RCRLFVA--DGTTFSLAPL----RLLLD-PGSCNSVLQEKDDTFREWT 203
+ ++Q+Y + R R++V DG F L R+LLD P S + E EW+
Sbjct: 142 KKVIQQYVPREVRNRVWVTGKDGVQFGLKEPGSFDRVLLDAPCSGERHILENQAAQDEWS 201
Query: 204 SR 205
R
Sbjct: 202 PR 203
>gi|124027719|ref|YP_001013039.1| ribosomal RNA small subunit methyltransferase B [Hyperthermus
butylicus DSM 5456]
gi|123978413|gb|ABM80694.1| ribosomal RNA small subunit methyltransferase B [Hyperthermus
butylicus DSM 5456]
Length = 433
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 89 QGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRL 148
+G+I D AS V AL GD +LDL AAPG K +++ + + + VDV+ RL
Sbjct: 221 RGEIVFQDKASAMVVEALEPEPGDVILDLAAAPGVKDTLVMQLTENRARIIAVDVSWARL 280
Query: 149 AACRTLLQKYALG-DRCRLFVADGTTFS--LAPLRLLLDPGSCNSVLQEKDDTFR----- 200
+ LL+ Y + R + AD TT L P +++LD +S KD +
Sbjct: 281 QRTKRLLRMYGVDISRIEVVQADSTTLHLRLKPSKVMLDAPCTSSGAVGKDPAIKLHLDD 340
Query: 201 -EWTSRIP 207
W +R P
Sbjct: 341 LNWVARFP 348
>gi|345017809|ref|YP_004820162.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033152|gb|AEM78878.1| sun protein [Thermoanaerobacter wiegelii Rt8.B1]
Length = 444
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 66 VVWLSGFY---SLPPDIKIAT-SMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
+V+ G+Y +L DIK YK+G IY D AS LN GD VLD+CAAP
Sbjct: 200 IVYKKGYYLEEALYIDIKNPERHQLYKEGLIYIQDEASMLVSKTLNPKEGDTVLDVCAAP 259
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
G K I ++ +SG V D+ HRL +
Sbjct: 260 GGKTTHIAQLMKNSGEVIAFDLHPHRLELIK 290
>gi|326389542|ref|ZP_08211109.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
gi|392940847|ref|ZP_10306491.1| ribosomal RNA small subunit methyltransferase RsmB
[Thermoanaerobacter siderophilus SR4]
gi|325994547|gb|EGD52972.1| sun protein [Thermoanaerobacter ethanolicus JW 200]
gi|392292597|gb|EIW01041.1| ribosomal RNA small subunit methyltransferase RsmB
[Thermoanaerobacter siderophilus SR4]
Length = 444
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 66 VVWLSGFY---SLPPDIKIAT-SMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
+V+ G+Y +L DIK YK+G IY D AS LN GD VLD+CAAP
Sbjct: 200 IVYKKGYYLEEALYIDIKNPERHQLYKEGLIYIQDEASMLVSKTLNPKEGDTVLDVCAAP 259
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
G K I ++ +SG V D+ HRL +
Sbjct: 260 GGKTTHIAQLMKNSGEVIAFDLHPHRLELIK 290
>gi|42519411|ref|NP_965341.1| SUN protein [Lactobacillus johnsonii NCC 533]
gi|41583699|gb|AAS09307.1| SUN protein [Lactobacillus johnsonii NCC 533]
Length = 438
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 12/158 (7%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFY 73
L E LD EN + + IR+ T E+D EEI+ ELK K +
Sbjct: 152 LVEYLLDHFGENKTKEILVRSNQPAANSIRM-TTKESDFEEIKEELK----KDNFSFEES 206
Query: 74 SLPPDI------KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
SL P +A + +K GKI DAA+ AV A + VLD C+APG K
Sbjct: 207 SLTPHNLNLNKGGVAQTALFKNGKITIQDAAASLAVDAFYFKGSEQVLDACSAPGGKTVQ 266
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR 165
I + + +GSV +D+ ++L R ++ + D+ R
Sbjct: 267 IAENL-TTGSVIALDIHENKLRLVRNAAERLHVSDKVR 303
>gi|385825620|ref|YP_005861962.1| RNA methylase [Lactobacillus johnsonii DPC 6026]
gi|329667064|gb|AEB93012.1| RNA methylase [Lactobacillus johnsonii DPC 6026]
Length = 434
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 12/158 (7%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFY 73
L E LD EN + + IR+ T E+D EEI+ ELK K +
Sbjct: 152 LVEYLLDHFGENKTKEILVRSNQPAANSIRM-TTKESDFEEIKEELK----KDNFSFEES 206
Query: 74 SLPPDI------KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
SL P +A + +K GKI DAA+ AV A + + VLD C+APG K
Sbjct: 207 SLTPHNLNLNKGGVAQTALFKNGKITIQDAAASLAVDAFDFKGSEQVLDACSAPGGKTVQ 266
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR 165
I + + +GSV +D+ ++L R ++ + D+ +
Sbjct: 267 IAENL-TTGSVIALDIHENKLRLVRNAAERLHVSDKVK 303
>gi|302347987|ref|YP_003815625.1| RNA (cytosine-C(5)-)-methyltransferase [Acidilobus saccharovorans
345-15]
gi|302328399|gb|ADL18594.1| RNA (Cytosine-C(5)-)-methyltransferase [Acidilobus saccharovorans
345-15]
Length = 335
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 71/158 (44%), Gaps = 4/158 (2%)
Query: 50 ADLEEIEAELKCKLEKVVWLS-GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNI 108
+LE E +LE+V +L G++ + I + Y +G Y D S V +N
Sbjct: 74 GELESRLGEAGFELERVPFLPHGYHVISSPISPGATHEYLKGYYYLQDPGSMLIVYVMNP 133
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
+LD+ AAPG K IL + DS + V+ R R+ A R+ LQ+ + L
Sbjct: 134 RPSATILDMAAAPGGKSTQILQLTRDSSLLIAVEPKRERIKALRSNLQRMGFSNYI-LIR 192
Query: 169 ADGTTFSL--APLRLLLDPGSCNSVLQEKDDTFREWTS 204
+D SL P ++LLD S + KD + TS
Sbjct: 193 SDARFLSLDTKPAQVLLDAPSSGEGIIRKDKNRKTKTS 230
>gi|297544782|ref|YP_003677084.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3]
gi|296842557|gb|ADH61073.1| sun protein [Thermoanaerobacter mathranii subsp. mathranii str. A3]
Length = 444
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 66 VVWLSGFY---SLPPDIKIATS-MAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
+V+ G+Y +L DIK S YK+G IY D AS LN + G+ VLD+CAAP
Sbjct: 200 IVYKKGYYLEEALYIDIKNPESHQLYKEGLIYIQDEASMLVSKILNPNEGETVLDVCAAP 259
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
G K I ++ ++G+V D+ HRL +
Sbjct: 260 GGKTTHIAQLMKNTGNVVAFDLHPHRLELIK 290
>gi|317052704|ref|YP_004113820.1| RNA methylase, NOL1/NOP2/sun family [Desulfurispirillum indicum S5]
gi|316947788|gb|ADU67264.1| RNA methylase, NOL1/NOP2/sun family [Desulfurispirillum indicum S5]
Length = 316
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 98/220 (44%), Gaps = 18/220 (8%)
Query: 13 PLPEAFLDFLKENGLDPSVYSAADSTPRYIR--------LKTGNEADLEEIEAELKCKLE 64
PLP FL L + PS Y +T R L++ L E+ A L
Sbjct: 6 PLPAEFLQRLTAI-VPPSWYEQVFATFHQHRTCSFRVNTLRSSTADALAELSA-LDISAS 63
Query: 65 KVVWLSGFYSLPPDIK--IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPG 122
V W + + +P + ++TS A+ +G+IY + +S A V LN G+ VLDL AAPG
Sbjct: 64 PVPWCAEAFVVPHGQRSLLSTSAAFSEGRIYIQNLSSMAPVLLLNPRPGEQVLDLAAAPG 123
Query: 123 AKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA-PL-- 179
K + ++ + G ++ V+ + R + ++ + ++ DG T LA P
Sbjct: 124 GKTLHLAALMENRGWISAVEAVKDRFFRLKANVEAFG-ASIVHTYLRDGRTVGLACPEHF 182
Query: 180 -RLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKAR 218
R+LLD C+S + D W P K R+ A K +
Sbjct: 183 DRVLLD-APCSSEARFHADNPASWQFWSPAKIREAARKQK 221
>gi|289578506|ref|YP_003477133.1| sun protein [Thermoanaerobacter italicus Ab9]
gi|289528219|gb|ADD02571.1| sun protein [Thermoanaerobacter italicus Ab9]
Length = 444
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 66 VVWLSGFY---SLPPDIKIATS-MAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
+V+ G+Y +L DIK S YK+G IY D AS LN + G+ VLD+CAAP
Sbjct: 200 IVYKKGYYLEEALYIDIKNPESHQLYKEGLIYIQDEASMLVSKILNPNEGETVLDVCAAP 259
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
G K I ++ ++G+V D+ HRL +
Sbjct: 260 GGKTTHIAQLMKNTGNVVAFDLHPHRLELIK 290
>gi|417837315|ref|ZP_12483554.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
johnsonii pf01]
gi|338762510|gb|EGP13778.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
johnsonii pf01]
Length = 438
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 12/158 (7%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFY 73
L E LD EN + + IR+ T E+D EEI+ ELK K +
Sbjct: 152 LVEYLLDHFGENKTKEILVRSNQPAANSIRM-TTKESDFEEIKEELK----KDNFSFEES 206
Query: 74 SLPPDI------KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
SL P +A + +K GKI DAA+ AV A + + VLD C+APG K
Sbjct: 207 SLTPHNLNLNKGGVAQTALFKNGKITIQDAAASLAVDAFDFKGSEQVLDSCSAPGGKTVQ 266
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR 165
I + + +GSV +D+ ++L R ++ + D+ +
Sbjct: 267 IAENL-TTGSVIALDIHENKLRLVRNAAERLHVSDKVK 303
>gi|421502975|ref|ZP_15949927.1| 16S rRNA methyltransferase B [Pseudomonas mendocina DLHK]
gi|400346432|gb|EJO94790.1| 16S rRNA methyltransferase B [Pseudomonas mendocina DLHK]
Length = 437
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+K+G++ D A+ A L ++ G VLD CAAPG K C +L+ V VD+
Sbjct: 220 FKEGRVSVQDEAAQLAADLLELAPGQRVLDACAAPGGKTCHLLEAEPALAEVVAVDLEEK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSL----APL-RLLLD-PGSCNSVLQEKDD 197
RLA R LQ+ LG RL ADG + P R+LLD P S V++ D
Sbjct: 280 RLARVRENLQR--LGLEARLIAADGRATKVWWDGTPFQRILLDAPCSATGVIRRHPD 334
>gi|312622543|ref|YP_004024156.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203010|gb|ADQ46337.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor
kronotskyensis 2002]
Length = 455
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 12 LPLPEAFLDFLKE---NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVW 68
+ LPE FL +KE + D + + + R+ T + +EE ++ + E++ W
Sbjct: 1 MNLPEEFLSKMKEILNDEFDQFIKIYDFDSYKGFRVNTA-KVSVEEFIDKIGIEFERIPW 59
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
+ +++++ Y G +Y + ++ V AL++ G+ VLDLCAAPG K I
Sbjct: 60 CKDGFYYTEELRLSKHPYYFAGLVYIQEPSAMFPVEALDVKEGEKVLDLCAAPGGKSIQI 119
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF-----VAD--GTTFSLAPLRL 181
+G +G + DV R+ A ++ L + L +A+ G F ++
Sbjct: 120 AARLGQNGLLVSNDVKPSRIKALVKNVENLGLTNVVILNNKPKEIAESYGAYFD----KI 175
Query: 182 LLD-PGSCNSVLQEKDDTFREWTSRIPWK 209
L+D P S + ++ ++WTS P K
Sbjct: 176 LVDAPCSGEGMFRKDPTAAKKWTSNHPEK 204
>gi|114319781|ref|YP_741464.1| Fmu (Sun) domain-containing protein [Alkalilimnicola ehrlichii
MLHE-1]
gi|114226175|gb|ABI55974.1| Fmu (Sun) domain protein [Alkalilimnicola ehrlichii MLHE-1]
Length = 474
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 50/109 (45%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAG 111
L + AE V W LP ++ G + + AS V+ L+ G
Sbjct: 47 LRSLLAEAGIDARPVAWQPSALRLPAGLRPGAHWGQAAGLYHAQEEASMVPVTLLDPQPG 106
Query: 112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
VLDLCAAPG K +G+ G+V DVA+ RLAA R L+++ L
Sbjct: 107 HRVLDLCAAPGNKTAQAALALGNRGTVVANDVAKGRLAAIRHLIKRLGL 155
>gi|295397805|ref|ZP_06807870.1| ribosomal RNA small subunit methyltransferase B [Aerococcus
viridans ATCC 11563]
gi|294973940|gb|EFG49702.1| ribosomal RNA small subunit methyltransferase B [Aerococcus
viridans ATCC 11563]
Length = 482
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 14 LPEAFLD-FLKENGLDPS--VYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLS 70
LP ++D F+ GLD + + ++ + TP +I ++ N+ ++ + + ++++
Sbjct: 176 LPPVWVDYFVDRFGLDEAEKLANSLNQTP-FITVRANNK--FNNLDNDKMTEYQEILEAE 232
Query: 71 GFYSLPPDI----------KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
GF P + A S + G+I D ++ AV ALN G+ VLD CAA
Sbjct: 233 GFSVAPSPLSPFALRVTKGNPAHSSLFMNGEITIQDESALLAVEALNPKPGETVLDACAA 292
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
PG K I + +G +G V D+A ++L + + + + D + D T
Sbjct: 293 PGGKTVQIAEAVGRTGHVIACDIAENKLPLIQENVDRMQVADHVEILHQDAT 344
>gi|448562423|ref|ZP_21635381.1| tRNA and rRNA cytosine-C5-methylase [Haloferax prahovense DSM
18310]
gi|445718741|gb|ELZ70425.1| tRNA and rRNA cytosine-C5-methylase [Haloferax prahovense DSM
18310]
Length = 313
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 22/158 (13%)
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
E W G L D T+ Y G ++G + S AL+ G+ V D CAAPG+
Sbjct: 53 EPTDWHPGILKLE-DSSPGTNWPYFHGWLHGQEEVSALPAIALDPQPGERVWDTCAAPGS 111
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA--DGTTFSLAPL-- 179
K I ++ D G + G D RL+A R ++ + + L V+ D FS+ P
Sbjct: 112 KTTQIAAMMDDEGVLVGNDNNLGRLSALRHNAERLGVTN---LVVSNQDARNFSMKPFGE 168
Query: 180 -------------RLLLD-PGSCNSVLQEKDDTFREWT 203
R+L+D P SC ++ D EWT
Sbjct: 169 RTPEKSGSFEQFDRVLVDAPCSCEGTCRKNPDVLDEWT 206
>gi|110668543|ref|YP_658354.1| tRNA and rRNA cytosine-C5-methylases [Haloquadratum walsbyi DSM
16790]
gi|109626290|emb|CAJ52748.1| tRNA/rRNA cytosine-C5-methylase [Haloquadratum walsbyi DSM 16790]
Length = 312
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 19/182 (10%)
Query: 39 PRYIRLKT--GNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGID 96
P +R+ T + +E E E + W SG + L + + S Y G ++G +
Sbjct: 26 PSVVRVNTIKSSVGRTQEALNEANINYEPIGWHSGLFKLETN-RPGISWPYFHGWLHGQE 84
Query: 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156
S A++ G+ V D CAAPG+K + ++ D+G V G D RL+A R +
Sbjct: 85 EVSVLPALAVDPDPGEIVWDACAAPGSKTTQLAALMDDTGVVIGNDNNLGRLSALRHNAE 144
Query: 157 KYALGDRCRLFVADGTTFSLAPL--------------RLLLD-PGSCNSVLQEKDDTFRE 201
+ + + + D FS P L+D P SC +++ D F +
Sbjct: 145 RLGVTNLV-VTNQDARNFSFNPFGGRTERANRIEAFDHALVDAPCSCEGTIRKNPDAFEQ 203
Query: 202 WT 203
W+
Sbjct: 204 WS 205
>gi|448585436|ref|ZP_21647829.1| tRNA and rRNA cytosine-C5-methylase [Haloferax gibbonsii ATCC
33959]
gi|445726136|gb|ELZ77753.1| tRNA and rRNA cytosine-C5-methylase [Haloferax gibbonsii ATCC
33959]
Length = 313
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 22/158 (13%)
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
E W G L D T+ Y G ++G + S AL+ G+ V D CAAPG+
Sbjct: 53 EPTDWHPGILKLE-DSSPGTNWPYFHGWLHGQEEVSALPAIALDPQPGERVWDTCAAPGS 111
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA--DGTTFSLAPL-- 179
K I ++ D G + G D RL+A R ++ + + L V+ D FS+ P
Sbjct: 112 KTTQIAAMMDDEGVLVGNDNNLGRLSALRHNAERLGVTN---LVVSNQDARNFSMKPFGE 168
Query: 180 -------------RLLLD-PGSCNSVLQEKDDTFREWT 203
R+L+D P SC ++ D EWT
Sbjct: 169 RTPEKSGSFEQFDRVLVDAPCSCEGTCRKNPDVLDEWT 206
>gi|385804007|ref|YP_005840407.1| tRNA/rRNA cytosine-C5-methylase [Haloquadratum walsbyi C23]
gi|339729499|emb|CCC40761.1| tRNA/rRNA cytosine-C5-methylase [Haloquadratum walsbyi C23]
Length = 312
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 19/182 (10%)
Query: 39 PRYIRLKT--GNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGID 96
P +R+ T + +E E E + W SG + L + + S Y G ++G +
Sbjct: 26 PSVVRVNTIKSSVGRTQEALNEANINYEPIGWHSGLFKLETN-RPGISWPYFHGWLHGQE 84
Query: 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156
S A++ G+ V D CAAPG+K + ++ D+G V G D RL+A R +
Sbjct: 85 EVSVLPALAVDPDPGEIVWDACAAPGSKTTQLAALMDDTGVVIGNDNNLGRLSALRHNAE 144
Query: 157 KYALGDRCRLFVADGTTFSLAPL--------------RLLLD-PGSCNSVLQEKDDTFRE 201
+ + + + D FS P L+D P SC +++ D F +
Sbjct: 145 RLGVTNLV-VTNQDARNFSFNPFGGRTERANRIEAFDHALVDAPCSCEGTIRKNPDAFEQ 203
Query: 202 WT 203
W+
Sbjct: 204 WS 205
>gi|20094975|ref|NP_614822.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19888229|gb|AAM02752.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 450
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 6/157 (3%)
Query: 15 PEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYS 74
P+ + L+ N P + T R LK E E ++ + + +E +L
Sbjct: 169 PDEVVALLEANNRRPPL------TIRVNTLKVDPEELAERLQRKYRVTVEPGRFLDEILK 222
Query: 75 LPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD 134
+P + I +++G D A+ A + LN G+ V+DLCAAPG K + ++G
Sbjct: 223 IPEGLPIGEMPEWEEGLFVIQDEAAALASAVLNPKPGEVVVDLCAAPGGKTTHMAQLMGG 282
Query: 135 SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171
G + +DV R+ R + ++ + D + DG
Sbjct: 283 EGKIVAIDVDEVRMERLREIAERMGVLDCIETHLMDG 319
>gi|358063825|ref|ZP_09150425.1| hypothetical protein HMPREF9473_02488 [Clostridium hathewayi
WAL-18680]
gi|356697962|gb|EHI59522.1| hypothetical protein HMPREF9473_02488 [Clostridium hathewayi
WAL-18680]
Length = 473
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 96/211 (45%), Gaps = 16/211 (7%)
Query: 9 ISKLPLPEAFLDFLKE---NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKC--KL 63
++++ LPE +++ +++ + P + S + +R+ TG + D+E L L
Sbjct: 1 MNRMELPERYIEKMRQLLGDEFSPYLDSFETPSVNGLRVNTG-KVDVEHFLEMLPSGLNL 59
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
E+V W+ + P + +++ + Y G Y + ++ S L + GD VLD+CAAPG
Sbjct: 60 ERVPWIENGFYYPQEERLSKDVYYYAGLYYLQEPSAMTPASLLPVEPGDMVLDVCAAPGG 119
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL---- 179
K + + G + D++ R A L+ + + + C V T LA +
Sbjct: 120 KSTELGVKLKGRGMLVANDISNSRAKALLKNLELFGIPNIC---VTSETPEKLAGVFPEF 176
Query: 180 --RLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
++L+D P S + + D + W + P
Sbjct: 177 FDKILVDAPCSGEGMFRRDKDMVKSWLEKGP 207
>gi|433422122|ref|ZP_20405923.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. BAB2207]
gi|448595829|ref|ZP_21653276.1| tRNA and rRNA cytosine-C5-methylase [Haloferax alexandrinus JCM
10717]
gi|432198703|gb|ELK54957.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. BAB2207]
gi|445742283|gb|ELZ93778.1| tRNA and rRNA cytosine-C5-methylase [Haloferax alexandrinus JCM
10717]
Length = 313
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 22/158 (13%)
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
E W G L D T+ Y G ++G + S AL+ G+ V D CAAPG+
Sbjct: 53 EPTDWHPGILKLE-DSSPGTNWPYFHGWLHGQEEVSALPAIALDPQPGERVWDTCAAPGS 111
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA--DGTTFSLAPL-- 179
K I ++ D G + G D RL+A R ++ + + L V+ D FS+ P
Sbjct: 112 KTTQIAAMMDDEGVLVGNDNNLGRLSALRHNAERLGVTN---LVVSNQDARNFSMKPFGE 168
Query: 180 -------------RLLLD-PGSCNSVLQEKDDTFREWT 203
R+L+D P SC ++ D EWT
Sbjct: 169 RTPERDGSFEQFDRVLVDAPCSCEGTCRKNPDVLDEWT 206
>gi|14600772|ref|NP_147293.1| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1]
gi|5104163|dbj|BAA79479.1| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1]
Length = 352
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 13/165 (7%)
Query: 50 ADLEEIEAELKCKLEKVVWLS-GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNI 108
++LE + ++ + ++ WL G L I++ + Y QG Y D S L +
Sbjct: 88 SELESMLSQKGFLVSRIPWLPHGIEVLEQPIRVGATHEYMQGLYYIQDPGSMLVAYLLGV 147
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
G+ VLD+ AAPG K I + DS + VD++R R+ A R+ +Q+ R +V
Sbjct: 148 EPGETVLDMAAAPGGKSTHIQQLSRDSTILVAVDISRRRMRALRSHMQRMGF----RSYV 203
Query: 169 ADGTTFSLAPL--------RLLLDPGSCNSVLQEKDDTFREWTSR 205
A L P R++LD S + KD R S+
Sbjct: 204 AVRADSRLLPRIAGTGWADRVMLDAPSTGEGIIRKDPERRRSRSQ 248
>gi|366089306|ref|ZP_09455779.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus acidipiscis
KCTC 13900]
Length = 448
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S AYK G++ D ++ +V ++NI D VLD+CAAPG K I + + D+G V
Sbjct: 225 IPQSRAYKAGQVTVQDESASLSVESMNIQPDDQVLDMCAAPGGKTTQIAEHLNDNGHVEA 284
Query: 141 VDVARHRL 148
+D+ +++L
Sbjct: 285 LDIHKNKL 292
>gi|260892752|ref|YP_003238849.1| sun protein [Ammonifex degensii KC4]
gi|260864893|gb|ACX51999.1| sun protein [Ammonifex degensii KC4]
Length = 452
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 18/141 (12%)
Query: 21 FLKENGLDPSVY------SAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVW------ 68
+LKE GL+ ++ A +T R L+T E +E + E ++ ++
Sbjct: 159 WLKEFGLEETIRICEANNQPAAATLRTNLLRTTREELMERLRREADLRVSPTLYAPEGIR 218
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
+ GF+ D++ S Y++G Y D +S A AL ++G VLD+C APG K +
Sbjct: 219 VQGFF----DLQHLPS--YQEGLFYIQDESSMLAAHALAPASGSFVLDVCGAPGGKATHL 272
Query: 129 LDIIGDSGSVTGVDVARHRLA 149
+++ DSG + VD+ HRLA
Sbjct: 273 AELMRDSGRILVVDIYAHRLA 293
>gi|448540796|ref|ZP_21623717.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. ATCC BAA-646]
gi|448549099|ref|ZP_21627875.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. ATCC BAA-645]
gi|448555726|ref|ZP_21631655.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. ATCC BAA-644]
gi|445708949|gb|ELZ60784.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. ATCC BAA-646]
gi|445713788|gb|ELZ65563.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. ATCC BAA-645]
gi|445717249|gb|ELZ68967.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sp. ATCC BAA-644]
Length = 313
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 22/158 (13%)
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
E W G L D T+ Y G ++G + S AL+ G+ V D CAAPG+
Sbjct: 53 EPTDWHPGILKLE-DSSPGTNWPYFHGWLHGQEEVSALPAIALDPQPGERVWDTCAAPGS 111
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA--DGTTFSLAPL-- 179
K I ++ D G + G D RL+A R ++ + L V+ D FS+ P
Sbjct: 112 KTTQIAAMMDDEGVLVGNDNNLGRLSALRHNAERLGV---TNLVVSNQDARNFSMKPFGE 168
Query: 180 -------------RLLLD-PGSCNSVLQEKDDTFREWT 203
R+L+D P SC ++ D EWT
Sbjct: 169 RTPEKDGSFEQFDRVLVDAPCSCEGTCRKNPDVLDEWT 206
>gi|448491986|ref|ZP_21608654.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum
californiensis DSM 19288]
gi|445692204|gb|ELZ44385.1| RNA methylase, NOL1/NOP2/sun family protein [Halorubrum
californiensis DSM 19288]
Length = 319
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 9/147 (6%)
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
+ V W G + LP + + Y G +G + S AL G+ V D CAAPG+
Sbjct: 53 DPVDWHDGLFRLP-EGNPGGNWPYVHGWTHGQEEVSVLPTLALAPRPGERVWDACAAPGS 111
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL---- 179
K I D + D G+V D RL+A R ++ + + + D FS PL
Sbjct: 112 KTTQIADAMDDEGTVVANDNNLGRLSALRHNAERLGITNAI-VTNQDARNFSTKPLAFDE 170
Query: 180 --RLLLD-PGSCNSVLQEKDDTFREWT 203
R L+D P SC ++ D +WT
Sbjct: 171 FDRALVDAPCSCEGTCRKNPDVLDQWT 197
>gi|448409715|ref|ZP_21574842.1| tRNA and rRNA cytosine-C5-methylase [Halosimplex carlsbadense
2-9-1]
gi|445672486|gb|ELZ25058.1| tRNA and rRNA cytosine-C5-methylase [Halosimplex carlsbadense
2-9-1]
Length = 312
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 18/155 (11%)
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
E V W G ++LP D + T+ Y G I+G + S + L+ G+ V D CAAPG+
Sbjct: 53 EPVGWHDGLFALPDD-QPGTNWPYVLGWIHGQEEVSAVPAAVLDPQPGERVWDACAAPGS 111
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL---- 179
K + ++ D+G + D R++A R+ ++ A + D SL P
Sbjct: 112 KTTQLAALMDDTGLLVATDNNLGRISALRSNAER-AGATNVAVTHEDARNHSLKPFRAPD 170
Query: 180 -----------RLLLD-PGSCNSVLQEKDDTFREW 202
R L+D P SC +++ D +W
Sbjct: 171 SDGGREGAPYDRALVDVPCSCEGTIRKNPDALDDW 205
>gi|340374457|ref|XP_003385754.1| PREDICTED: putative methyltransferase NSUN5-like [Amphimedon
queenslandica]
Length = 396
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 68/152 (44%), Gaps = 26/152 (17%)
Query: 33 SAADST----PRYIRLKTGNEADLEEIEAEL-KCKLEKVVW------------------- 68
S +DST PRY+RL A E+ EL K L++V +
Sbjct: 98 SPSDSTSSELPRYVRLNALKCASPVELTNELVKLGLKEVPFNKDIQFILKDKGNDWYFKD 157
Query: 69 --LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLC 126
+ Y LP +K+ + Y GKI D +S A L+ G V+D CAAPG+K
Sbjct: 158 DLIPDLYVLPYSVKLTNTSLYTSGKIILQDKSSCIASYVLSPPPGASVIDACAAPGSKTS 217
Query: 127 MILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
I + ++GS+ D + R A + LL+KY
Sbjct: 218 HIAAAMKNTGSIHAFDRDKKRCDAMKALLRKY 249
>gi|429205364|ref|ZP_19196641.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus saerimneri 30a]
gi|428146436|gb|EKW98675.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus saerimneri 30a]
Length = 452
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%)
Query: 83 TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVD 142
TS+AY++G++ D ++ AV ++ I GD VLD CAAPG K I + +SG VT +D
Sbjct: 230 TSLAYQRGELSVQDESAMLAVESMQIKPGDQVLDACAAPGGKTTQIAIELNESGRVTALD 289
Query: 143 VARHRLAACRTLLQKYALGD 162
+ H++ ++ + D
Sbjct: 290 IHAHKVKLIEVNAKRIGVAD 309
>gi|448602998|ref|ZP_21656819.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445746194|gb|ELZ97656.1| tRNA and rRNA cytosine-C5-methylase [Haloferax sulfurifontis ATCC
BAA-897]
Length = 313
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 22/158 (13%)
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
E W G L D T+ Y G ++G + S AL+ G+ V D CAAPG+
Sbjct: 53 EPTDWHPGILKLE-DSSPGTNWPYFHGWLHGQEEVSALPAIALDPQPGERVWDTCAAPGS 111
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA--DGTTFSLAPL-- 179
K I ++ D G + G D RL+A R ++ + + L V+ D FS+ P
Sbjct: 112 KTTQIAAMMDDEGVLIGNDNNLGRLSALRHNAERLGVTN---LVVSNQDARNFSMKPYGE 168
Query: 180 -------------RLLLD-PGSCNSVLQEKDDTFREWT 203
R+L+D P SC ++ D EWT
Sbjct: 169 RTPEKSESFEQFDRVLVDAPCSCEGTCRKNPDVLDEWT 206
>gi|448624613|ref|ZP_21670561.1| tRNA and rRNA cytosine-C5-methylase [Haloferax denitrificans ATCC
35960]
gi|445749818|gb|EMA01260.1| tRNA and rRNA cytosine-C5-methylase [Haloferax denitrificans ATCC
35960]
Length = 313
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 22/158 (13%)
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
E W G L D T+ Y G ++G + S AL+ G+ V D CAAPG+
Sbjct: 53 EPTDWHPGILKLE-DSSPGTNWPYFHGWLHGQEEVSALPAIALDPQPGERVWDTCAAPGS 111
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA--DGTTFSLAPL-- 179
K I ++ D G + G D RL+A R ++ + + L V+ D FS+ P
Sbjct: 112 KTTQIAAMMDDEGVLVGNDNNLGRLSALRHNAERLGVTN---LVVSNQDARNFSMKPYGE 168
Query: 180 -------------RLLLD-PGSCNSVLQEKDDTFREWT 203
R+L+D P SC ++ D EWT
Sbjct: 169 RTPERDASFEQFDRVLVDAPCSCEGTCRKNPDVLDEWT 206
>gi|42522579|ref|NP_967959.1| hypothetical protein Bd1019 [Bdellovibrio bacteriovorus HD100]
gi|39575111|emb|CAE78952.1| conserved hypothetical protein [Bdellovibrio bacteriovorus HD100]
Length = 296
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 92 IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAAC 151
IY +D AS AL++ GD +LD+CAAPG K ++++ G G + D++ R
Sbjct: 82 IYIMDPASVMVARALDVQPGDRLLDMCAAPGGKSLVMIESFGGEGEIFCNDLSPERRERL 141
Query: 152 RTLLQKYALGD-RCRLFVA--DGTTFSLAPL----RLLLD-PGSCNSVLQEKDDTFREWT 203
+ ++Q+Y + R R++V DG F L R+LLD P S + E EW+
Sbjct: 142 KKVIQQYVPREVRNRVWVTGKDGVQFGLKEPGSFDRVLLDAPCSGERHILENQAAQDEWS 201
Query: 204 SR 205
R
Sbjct: 202 PR 203
>gi|292655744|ref|YP_003535641.1| tRNA and rRNA cytosine-C5-methylase [Haloferax volcanii DS2]
gi|448289731|ref|ZP_21480894.1| tRNA and rRNA cytosine-C5-methylase [Haloferax volcanii DS2]
gi|291371381|gb|ADE03608.1| tRNA and rRNA cytosine-C5-methylase [Haloferax volcanii DS2]
gi|445581248|gb|ELY35609.1| tRNA and rRNA cytosine-C5-methylase [Haloferax volcanii DS2]
Length = 313
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 22/158 (13%)
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
E W G L D T+ Y G ++G + S AL+ G+ V D CAAPG+
Sbjct: 53 EPTDWHPGILELE-DSSPGTNWPYFHGWLHGQEEVSALPAIALDPQPGERVWDTCAAPGS 111
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA--DGTTFSLAPL-- 179
K I ++ D G + G D RL+A R ++ + + L V+ D FS+ P
Sbjct: 112 KTTQIAAMMDDEGVLVGNDNNLGRLSALRHNAERLGVTN---LVVSNQDARNFSMKPYGE 168
Query: 180 -------------RLLLD-PGSCNSVLQEKDDTFREWT 203
R+L+D P SC ++ D EWT
Sbjct: 169 RTPERDASFEQFDRVLVDAPCSCEGTCRKNPDVLDEWT 206
>gi|448570932|ref|ZP_21639443.1| tRNA and rRNA cytosine-C5-methylase [Haloferax lucentense DSM
14919]
gi|445722850|gb|ELZ74501.1| tRNA and rRNA cytosine-C5-methylase [Haloferax lucentense DSM
14919]
Length = 313
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 22/158 (13%)
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
E W G L D T+ Y G ++G + S AL+ G+ V D CAAPG+
Sbjct: 53 EPTDWHPGILKLE-DSSPGTNWPYFHGWLHGQEEVSALPAIALDPQPGERVWDTCAAPGS 111
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA--DGTTFSLAPL-- 179
K I ++ D G + G D RL+A R ++ + + L V+ D FS+ P
Sbjct: 112 KTTQIAAMMDDEGVLVGNDNNLGRLSALRHNAERLGVTN---LVVSNQDARNFSMKPYGE 168
Query: 180 -------------RLLLD-PGSCNSVLQEKDDTFREWT 203
R+L+D P SC ++ D EWT
Sbjct: 169 RTPERDASFEQFDRVLVDAPCSCEGTCRKNPDVLDEWT 206
>gi|422940079|ref|ZP_16967439.1| RNA methyltransferase Sun [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
gi|339890214|gb|EGQ79375.1| RNA methyltransferase Sun [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
Length = 297
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 80/164 (48%), Gaps = 10/164 (6%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPR--YIRLKTGN----EADLEEIEAELKCKLEKVV 67
+P+ F D L++ D ++ A S + Y+ ++ E + EE K ++ +
Sbjct: 4 IPKWFYDILEKQYGDKNLKQAIRSLKKVPYLSVRINKLKYTEKEFEEFLQ--KNNIQIIK 61
Query: 68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
+ Y + + I S +K GKI DA+S A L + + + VLD+CAAPG K +
Sbjct: 62 KVDTVYYVNSGL-IIISEEFKSGKIIAQDASSYLAAKNLGVLSNELVLDICAAPGGKTAV 120
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+ + + + G + +D+ +H++ T ++K + D + V DG
Sbjct: 121 LAEQMENKGEIIAIDIHQHKIKLIETNMKKLEI-DIVKAIVMDG 163
>gi|336400384|ref|ZP_08581163.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
21_1A]
gi|336162572|gb|EGN65536.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
21_1A]
Length = 435
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K GKI DA+S A L++ + VLD+CAAPG K ++ + + + G +
Sbjct: 212 IIISEEFKTGKIIAQDASSYLAAKNLSVMPNELVLDICAAPGGKTAVLAEQMENKGEIIA 271
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+D+ +H++ T ++K + D + V DG
Sbjct: 272 IDIHQHKIKLIETNMKKLGI-DIVKAIVMDG 301
>gi|336419395|ref|ZP_08599659.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
11_3_2]
gi|336163792|gb|EGN66708.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
11_3_2]
Length = 435
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K GKI DA+S A L + + + VLD+CAAPG K ++ + + + G +
Sbjct: 212 IIISEEFKTGKIIAQDASSYLAAKNLGVLSNELVLDICAAPGGKTAVLAEQMENKGEIIA 271
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+D+ +H++ T ++K + D + V DG
Sbjct: 272 IDIHQHKIKLIETNMKKLGI-DIVKAIVIDG 301
>gi|257051428|ref|YP_003129261.1| RNA methylase, NOL1/NOP2/sun family [Halorhabdus utahensis DSM
12940]
gi|256690191|gb|ACV10528.1| RNA methylase, NOL1/NOP2/sun family [Halorhabdus utahensis DSM
12940]
Length = 302
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 10/171 (5%)
Query: 40 RYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAAS 99
R LKT E +E E E V W G LP D ++ Y QG ++G + S
Sbjct: 30 RVNTLKTTVERAKTALETE-GITYETVDWHDGLLRLPDD-NPGSNWPYVQGWLHGQEEVS 87
Query: 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159
L+ GD V D AAPG+K + ++ D G++ D RL+A R+ ++
Sbjct: 88 ALPPVVLDPDPGDRVWDATAAPGSKTTQLAALMDDEGAIVATDNNLGRLSALRSNAERLG 147
Query: 160 LGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
+ + + D SL P L+D P SC +++ D +W+
Sbjct: 148 VTNLA-VTNEDARNHSLKPFDGRQYDHALVDAPCSCEGTIRKNPDALAQWS 197
>gi|227828150|ref|YP_002829930.1| RNA methylase [Sulfolobus islandicus M.14.25]
gi|229585379|ref|YP_002843881.1| RNA methylase [Sulfolobus islandicus M.16.27]
gi|238620340|ref|YP_002915166.1| RNA methylase [Sulfolobus islandicus M.16.4]
gi|385773820|ref|YP_005646387.1| RNA methylase [Sulfolobus islandicus HVE10/4]
gi|385776455|ref|YP_005649023.1| RNA methylase [Sulfolobus islandicus REY15A]
gi|227459946|gb|ACP38632.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.14.25]
gi|228020429|gb|ACP55836.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.16.27]
gi|238381410|gb|ACR42498.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus M.16.4]
gi|323475203|gb|ADX85809.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus REY15A]
gi|323477935|gb|ADX83173.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus HVE10/4]
Length = 339
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 17 AFLDFLKENGLDPSVYSAADSTPRYIR-----LKTGNEAD--------LEEIEAELKCKL 63
FLD++ E L+ ++S+ + Y+ LK + LEE+ +E L
Sbjct: 32 GFLDYMIERYLN--MFSSKEELEEYLNSCSFPLKKSIRCNTLRTDCKKLEEMMSEKGFIL 89
Query: 64 EKVVWLSGFYSL---PPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
EKV WL Y + PP + +++ Y G + AS LN S D VLD+ AA
Sbjct: 90 EKVKWLQHGYIIKRTPPKPSLGSTLEYLMGYYHIQGLASMVPAYVLNPSQDDFVLDMAAA 149
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAA 150
PG K + I+ + G V V+ R R+ A
Sbjct: 150 PGGKTTQVSQIMQNKGLVVAVEKKRSRIRA 179
>gi|399574398|ref|ZP_10768157.1| nol1/nop2/sun family RNA methylase [Halogranum salarium B-1]
gi|399240230|gb|EJN61155.1| nol1/nop2/sun family RNA methylase [Halogranum salarium B-1]
Length = 311
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVT 139
K T+ Y G ++G + S AL+ G+ V D CAAPG+K + ++ D G V
Sbjct: 68 KAGTTWPYFHGWLHGQEEVSALPAIALDPQPGETVWDTCAAPGSKSTQLSALMDDEGFVV 127
Query: 140 GVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVL 192
D + RL+A R ++ + + + D FSL P R L+D P SC
Sbjct: 128 ANDNSLGRLSALRHNAERLGVTN-VAVTNKDARNFSLKPFDFDQFDRTLVDAPCSCEGTC 186
Query: 193 QEKDDTFREWT 203
++ D +WT
Sbjct: 187 RKNPDALEKWT 197
>gi|325263990|ref|ZP_08130723.1| NOL1/NOP2/sun family protein [Clostridium sp. D5]
gi|324031028|gb|EGB92310.1| NOL1/NOP2/sun family protein [Clostridium sp. D5]
Length = 466
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 102/251 (40%), Gaps = 30/251 (11%)
Query: 14 LPEAFLDFLKEN-GLDPSVYSAADSTPRYIRLKTG-NEADLEEIEAELKCKLEKVVWLS- 70
LP+AF D +K G + Y PR+ L+ N+ +EE LE + W+S
Sbjct: 3 LPKAFEDKMKALLGDEYGSYLECYEEPRHYGLRVNTNKISVEEFLKIAPWPLEPIPWISN 62
Query: 71 GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
GFY +++ A Y G Y + ++ S L + GD VLD+CAAPG K +
Sbjct: 63 GFYYDGENVQPAKHPYYFAGLYYLQEPSAMTPASRLPVEPGDRVLDVCAAPGGKATELGA 122
Query: 131 IIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT---TFSLAPLRLLLD-PG 186
+ G + D++ R L+ + +G+ L G FS ++L+D P
Sbjct: 123 RLQGEGVLIANDISNSRAKGLLKNLELFGIGNMLVLSEEPGKLIEYFSEYFDKILIDAPC 182
Query: 187 SCNSVLQEKDDTFREWTSRIP--WKERKRAV---------------------KARENAAS 223
S + ++ + W P + +R++ A EN +
Sbjct: 183 SGEGMFRKDKKMVKAWEEHGPEFFSRLQRSIITQAAAMLKPGGMLLYSTCTFDASENEQT 242
Query: 224 KAIVRSEHPEL 234
+RS++PE
Sbjct: 243 IEYLRSQYPEF 253
>gi|389847107|ref|YP_006349346.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mediterranei ATCC
33500]
gi|448614944|ref|ZP_21663972.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mediterranei ATCC
33500]
gi|388244413|gb|AFK19359.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mediterranei ATCC
33500]
gi|445753031|gb|EMA04450.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mediterranei ATCC
33500]
Length = 313
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 67/158 (42%), Gaps = 22/158 (13%)
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
E W G L + T+ Y G ++G + S AL+ G+ + D CAAPG+
Sbjct: 53 EPTDWHPGILKLE-ESSPGTNWPYFHGWLHGQEEVSALPAIALDPQPGERIWDTCAAPGS 111
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA--DGTTFSLAPL-- 179
K I ++ D G + G D RL+A R ++ + + L V+ D FS+ P
Sbjct: 112 KTTQIAAMMDDEGVLVGNDNNLGRLSALRHNAERLGVTN---LVVSNQDARNFSMKPFGE 168
Query: 180 -------------RLLLD-PGSCNSVLQEKDDTFREWT 203
R+L+D P SC ++ D EWT
Sbjct: 169 RTPEEPGSFEQFDRVLVDAPCSCEGTCRKNPDVLDEWT 206
>gi|227830857|ref|YP_002832637.1| RNA methylase [Sulfolobus islandicus L.S.2.15]
gi|229579743|ref|YP_002838142.1| RNA methylase [Sulfolobus islandicus Y.G.57.14]
gi|284998364|ref|YP_003420132.1| RNA methylase [Sulfolobus islandicus L.D.8.5]
gi|227457305|gb|ACP35992.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
L.S.2.15]
gi|228010458|gb|ACP46220.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
Y.G.57.14]
gi|284446260|gb|ADB87762.1| putative RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
L.D.8.5]
Length = 339
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 17 AFLDFLKENGLDPSVYSAADSTPRYIR-----LKTGNEAD--------LEEIEAELKCKL 63
FLD++ E L+ ++S+ + Y+ LK + LEE+ +E L
Sbjct: 32 GFLDYMIERYLN--MFSSKEELEEYLNSCSFPLKKSIRCNTLRTDCKKLEEMMSEKGFIL 89
Query: 64 EKVVWLSGFYSL---PPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
EKV WL Y + PP + +++ Y G + AS LN S D VLD+ AA
Sbjct: 90 EKVKWLQHGYIIKRTPPKPSLGSTLEYLMGYYHIQGLASMVPAYVLNPSQDDFVLDMAAA 149
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAA 150
PG K + I+ + G V V+ R R+ A
Sbjct: 150 PGGKTTQVSQIMQNKGLVVAVEKKRSRIRA 179
>gi|337287123|ref|YP_004626596.1| RNA methylase, NOL1/NOP2/sun family [Thermodesulfatator indicus DSM
15286]
gi|335359951|gb|AEH45632.1| RNA methylase, NOL1/NOP2/sun family [Thermodesulfatator indicus DSM
15286]
Length = 308
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 62/149 (41%), Gaps = 22/149 (14%)
Query: 16 EAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELK------CKLEKVVWL 69
E FL+ LKE P Y RL NE E E LK + E V L
Sbjct: 22 ERFLEHLKE------------PLPLYFRL---NELKCPEPEMALKGLARQGVQTEPVPGL 66
Query: 70 SGFYSLPP-DIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
FY + P D + + Y G IY + +S V AL G+++LD+CAAPG+K I
Sbjct: 67 PQFYKVEPRDFPLGNTEEYYLGYIYPMTISSALPVIALEPEPGEYILDMCAAPGSKTTQI 126
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQK 157
D + D RL A L++
Sbjct: 127 AQAAKDKAVIVANDRRLDRLTALVANLKR 155
>gi|262037542|ref|ZP_06011001.1| putative ribosomal RNA small subunit methyltransferase B
[Leptotrichia goodfellowii F0264]
gi|261748472|gb|EEY35852.1| putative ribosomal RNA small subunit methyltransferase B
[Leptotrichia goodfellowii F0264]
Length = 442
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 95/201 (47%), Gaps = 24/201 (11%)
Query: 11 KLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKL----EKV 66
K+ PE ++D +K S S + + RY K + E+I +E+K + ++V
Sbjct: 161 KVDYPEDYIDIMK------SYKSRSYLSVRYNSKKLTKDR-FEKILSEVKSGILFSADEV 213
Query: 67 VWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLC 126
+LS + I + YK G I DA+S AV LN+ GD VLD CAAPG K
Sbjct: 214 YYLS-------NSNIFDTEEYKNGNIIIQDASSYLAVKNLNVEKGDVVLDACAAPGGKSL 266
Query: 127 MILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT---TFSLAPLRLLL 183
IL + + D+ H++ + +KY + ++ + D T + ++ ++LL
Sbjct: 267 AILQNF-EPELLVAEDIHEHKIKILENMKKKYNFSN-LKVVLNDATQIESLNMKFDKILL 324
Query: 184 D-PGSCNSVLQEKDDTFREWT 203
D P S VL++K + + T
Sbjct: 325 DVPCSGLGVLRKKPEKIYDLT 345
>gi|327284099|ref|XP_003226776.1| PREDICTED: putative methyltransferase NSUN5-like [Anolis
carolinensis]
Length = 475
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%)
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
L G PP + YK G + D AS LN + G HVLD CAAPG K +
Sbjct: 200 LPGVLIFPPGTDLHEDQLYKAGHVILQDKASCLPAFLLNPTPGSHVLDACAAPGNKTSHL 259
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQK 157
I+G+ G + D+ RLA T+L +
Sbjct: 260 AAIMGNKGRIFAFDLDAKRLATMSTMLAR 288
>gi|310659156|ref|YP_003936877.1| RsmB [[Clostridium] sticklandii]
gi|308825934|emb|CBH21972.1| RsmB [[Clostridium] sticklandii]
Length = 444
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 77/172 (44%), Gaps = 27/172 (15%)
Query: 18 FLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPP 77
FL KE + S + +IRL L EAEL LE+ G YS
Sbjct: 168 FLKIYKEEFTRQLLSSMLEKPSLFIRLNK-----LRSTEAELFENLEQ----QGIYSKKN 218
Query: 78 DI-----------KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLC 126
DI I ++ + +G D +S AV ALN GD VLD+C+APG K
Sbjct: 219 DIIDSAYEISGMKNIGSNPLFVKGGFVIQDLSSMLAVKALNPLPGDTVLDICSAPGGKSF 278
Query: 127 MILDIIGDSGSVTGVDVARHRLAACRTLLQKYA--LG-DRCRLFVADGTTFS 175
I D++ + G + +D++ H++ +L+K A LG D V D T F+
Sbjct: 279 YIADLMENKGQLDSMDISEHKI----QMLKKRAVELGVDIINARVMDATVFN 326
>gi|399518639|ref|ZP_10759593.1| Sun protein [Pseudomonas pseudoalcaligenes CECT 5344]
gi|399113133|emb|CCH36151.1| Sun protein [Pseudomonas pseudoalcaligenes CECT 5344]
Length = 435
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ T +K+G++ D A+ A L ++ G VLD CAAPG K C +L++ G V
Sbjct: 214 VTTLPGFKEGRVSVQDEAAQLAADLLELAPGQRVLDACAAPGGKTCHLLEVEPGLGEVVA 273
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTT----FSLAPL-RLLLD-PGSCNSVLQE 194
VD+ RLA R L + L L ADG + P R+LLD P S V++
Sbjct: 274 VDLEAKRLARVRENLDRLHL--EATLIAADGRATGAWWDGQPFQRILLDAPCSATGVIRR 331
Query: 195 KDD 197
D
Sbjct: 332 HPD 334
>gi|288932240|ref|YP_003436300.1| Fmu (Sun) domain protein [Ferroglobus placidus DSM 10642]
gi|288894488|gb|ADC66025.1| Fmu (Sun) domain protein [Ferroglobus placidus DSM 10642]
Length = 446
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 15/190 (7%)
Query: 41 YIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIAT---SMAYKQG--KIYGI 95
YIR+ T L+ E L+ LEK + LP K+ + AY G +++ I
Sbjct: 186 YIRVNT-----LKTSEENLRRYLEKNDVIVEETFLPEVFKVVSYDKPPAYLDGHNELFVI 240
Query: 96 -DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL 154
D AS LN GD V DLCAAPG+K + ++ + G + VD ++ RL R
Sbjct: 241 QDLASCLVSRTLNPEPGDVVADLCAAPGSKTSHMAALMENKGKIIAVDNSKERLERMRAR 300
Query: 155 LQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWT--SRIPWKERK 212
L K + + ++ + D + L ++LLDP C+S ++ +W R+ WK +
Sbjct: 301 LNKLGV-ENVKILLGDASKIELEADKVLLDP-PCSSTGSVRNYPSVKWRYDPRLFWKTVE 358
Query: 213 RAVKARENAA 222
K +NA+
Sbjct: 359 LQRKMLKNAS 368
>gi|345304456|ref|YP_004826358.1| tRNA (cytosine-5-)-methyltransferase [Rhodothermus marinus
SG0.5JP17-172]
gi|345113689|gb|AEN74521.1| tRNA (cytosine-5-)-methyltransferase [Rhodothermus marinus
SG0.5JP17-172]
Length = 304
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 73/163 (44%), Gaps = 9/163 (5%)
Query: 44 LKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAV 103
L+T E +EAE K E + W S + LPPD + +AY G + + S V
Sbjct: 37 LRTTPEQVKAALEAE-GLKPEPLAWRSDAFRLPPDSQPGNRLAYVLGHYHVQEEVSLLPV 95
Query: 104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR 163
L+ G+ VLDLCAAPG K I + + G+V D RL +++ L +
Sbjct: 96 PLLDPQPGERVLDLCAAPGGKTAQIAVRMRNRGTVVANDRNPLRLRQLSGTIERLGLLN- 154
Query: 164 CRLFVADGTTFSL--APL-RLLLD-PGSCNSVL---QEKDDTF 199
+ DG + L P R+L+D P SC Q+ D F
Sbjct: 155 VTTTLHDGADYPLESGPFDRVLIDVPCSCEGNFRKDQQVADAF 197
>gi|448608995|ref|ZP_21660274.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mucosum ATCC
BAA-1512]
gi|445747372|gb|ELZ98828.1| tRNA and rRNA cytosine-C5-methylase [Haloferax mucosum ATCC
BAA-1512]
Length = 313
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 78/188 (41%), Gaps = 26/188 (13%)
Query: 37 STPRYIR---LKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIY 93
S P +R +KT E E ++ E E W G L + T+ Y G ++
Sbjct: 24 SLPSVVRVNTIKTTVERAREALDDE-GVAYEPTDWHPGILKLE-NSSPGTNWPYFHGWLH 81
Query: 94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRT 153
G + S AL+ G+ + D CAAPG+K I ++ D G + G D RL+A R
Sbjct: 82 GQEEVSALPAIALDPQPGERIWDTCAAPGSKTTQIAAMMDDEGVLIGNDNNLGRLSALRH 141
Query: 154 LLQKYALGDRCRLFVA--DGTTFSLAPL---------------RLLLD-PGSCNSVLQEK 195
++ + L V+ D FS+ P R+L+D P SC ++
Sbjct: 142 NAERLGV---TNLVVSNQDARNFSMKPFGERTPDKSGSFEQFDRVLVDAPCSCEGTCRKN 198
Query: 196 DDTFREWT 203
D EWT
Sbjct: 199 PDVLDEWT 206
>gi|448576136|ref|ZP_21642179.1| tRNA and rRNA cytosine-C5-methylase [Haloferax larsenii JCM 13917]
gi|445729816|gb|ELZ81410.1| tRNA and rRNA cytosine-C5-methylase [Haloferax larsenii JCM 13917]
Length = 313
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 18/155 (11%)
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
E W G L D T+ Y G ++G + S AL+ G+ V D CAAPG+
Sbjct: 53 EPTDWHPGILKLE-DSSPGTNWPYFHGWLHGQEEVSALPAIALDPQPGEKVWDTCAAPGS 111
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL---- 179
K I ++ D G + G D RL+A R ++ + + + D FS+ P
Sbjct: 112 KTTQIAAMMDDQGVLVGNDNNLGRLSALRHNAERLGVTNLA-VTNQDARNFSMKPFGERN 170
Query: 180 -----------RLLLD-PGSCNSVLQEKDDTFREW 202
R+L+D P SC ++ D EW
Sbjct: 171 LDESGSFEEFDRVLVDAPCSCEGTCRKNPDVLDEW 205
>gi|448591436|ref|ZP_21650924.1| tRNA and rRNA cytosine-C5-methylase [Haloferax elongans ATCC
BAA-1513]
gi|445733410|gb|ELZ84979.1| tRNA and rRNA cytosine-C5-methylase [Haloferax elongans ATCC
BAA-1513]
Length = 313
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 18/155 (11%)
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
E W G L D T+ Y G ++G + S AL+ G+ V D CAAPG+
Sbjct: 53 EPTDWHPGILKLE-DSSPGTNWPYFHGWLHGQEEVSALPAIALDPQPGEKVWDTCAAPGS 111
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL---- 179
K I ++ D G + G D RL+A R ++ + + + D FS+ P
Sbjct: 112 KTTQIAAMMDDEGVLVGNDNNLGRLSALRHNAERLGVTNLA-VTNQDARNFSMKPFGERN 170
Query: 180 -----------RLLLD-PGSCNSVLQEKDDTFREW 202
R+L+D P SC ++ D EW
Sbjct: 171 LDESGAFEEFDRVLVDAPCSCEGTCRKNPDVLDEW 205
>gi|373852753|ref|ZP_09595553.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV5]
gi|372474982|gb|EHP34992.1| Fmu (Sun) domain protein [Opitutaceae bacterium TAV5]
Length = 426
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
Query: 39 PRYIRLKTGNEADLEEIEAELKCK---LEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGI 95
P ++RL+T A + +EAEL + +E+ L + LPPD + ++ +Y+ G++
Sbjct: 159 PLWLRLQTATPAGVAAVEAELAGRGWPVERFEALPTAWRLPPDAAVTSTESYRDGRVEVQ 218
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
D S + + + G LD CA G K + ++G G V D+ LA R
Sbjct: 219 DLGSQLLLETVAPAPGGRWLDACAGAGGKTLQLAQLLGPQGRVEAHDIRAAALAELRRRA 278
Query: 156 QKYALGD 162
Q+ +
Sbjct: 279 QRGGFAN 285
>gi|159041954|ref|YP_001541206.1| Fmu (Sun) domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157920789|gb|ABW02216.1| Fmu (Sun) domain protein [Caldivirga maquilingensis IC-167]
Length = 426
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 81/194 (41%), Gaps = 36/194 (18%)
Query: 16 EAFLDFLKENGLDPSVY-SAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYS 74
EA L +K+N DP Y S S PR+I + L E+E L +V WL +
Sbjct: 107 EARLSEVKDN--DPLTYLSIKYSFPRFIVEELSRGMGLSELEDYLSSLNRRVTWLR-VNT 163
Query: 75 LPPDIKIATSMA-------------------------------YKQGKIYGIDAASGAAV 103
L D+ A + +K G + D AS V
Sbjct: 164 LKVDLDKAIRLLEDEGVEFTQSRLYPFMLLVKGYRRPMGYLRLFKDGAVVPQDLASALVV 223
Query: 104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD- 162
L GD ++D CAAPG K +I+ + + V +DV+++RL+ R++L++ + D
Sbjct: 224 LNLMPEPGDVIIDACAAPGMKTSLIMQLTDNKAEVIAIDVSKNRLSKMRSILRRMGVDDS 283
Query: 163 RCRLFVADGTTFSL 176
R + +D + L
Sbjct: 284 RVHIMRSDSSRLRL 297
>gi|420206463|ref|ZP_14711973.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM008]
gi|394278302|gb|EJE22619.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM008]
Length = 435
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K+G I D +S +N+ D VLD C+APG K C + +I+ G V
Sbjct: 219 VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ + ++K L + + F D T + ++L+D P S VL+ K
Sbjct: 279 TDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVYDKMYDKILVDAPCSGFGVLRHK 334
>gi|146305094|ref|YP_001185559.1| sun protein [Pseudomonas mendocina ymp]
gi|145573295|gb|ABP82827.1| 16S rRNA m(5)C-967 methyltransferase [Pseudomonas mendocina ymp]
Length = 437
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+++G++ D A+ A L ++ G VLD CAAPG K C +L+ V VD+
Sbjct: 220 FREGRVSVQDEAAQLAADLLELAPGQRVLDACAAPGGKTCHLLEAEPALAEVIAVDLEEK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSL----APL-RLLLD-PGSCNSVLQEKDD 197
RL R LQ+ LG RL ADG + P R+LLD P S V++ D
Sbjct: 280 RLTRVRENLQR--LGLEARLIAADGRATKVWWDGTPFQRILLDAPCSATGVIRRHPD 334
>gi|416124380|ref|ZP_11595376.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis FRI909]
gi|319401490|gb|EFV89700.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis FRI909]
Length = 435
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K+G I D +S +N+ D VLD C+APG K C + +I+ G V
Sbjct: 219 VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ + ++K L + + F D T ++ ++L+D P S VL+ K
Sbjct: 279 TDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVYNKMYDKILVDAPCSGLGVLRHK 334
>gi|420211892|ref|ZP_14717248.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM001]
gi|394280402|gb|EJE24683.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM001]
Length = 435
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K+G I D +S +N+ D VLD C+APG K C + +I+ G V
Sbjct: 219 VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ + ++K L + + F D T + ++L+D P S VL+ K
Sbjct: 279 TDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVYDKMYDKILVDAPCSGFGVLRHK 334
>gi|420199003|ref|ZP_14704687.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM031]
gi|394272689|gb|EJE17139.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM031]
Length = 435
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K+G I D +S +N+ D VLD C+APG K C + +I+ G V
Sbjct: 219 VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ + ++K L + + F D T ++ ++L+D P S VL+ K
Sbjct: 279 TDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVYNKMYDKILVDAPCSGLGVLRHK 334
>gi|15897196|ref|NP_341801.1| proliferating cell nuclear antigen [Sulfolobus solfataricus P2]
gi|284174441|ref|ZP_06388410.1| proliferating cell nuclear antigen [Sulfolobus solfataricus 98/2]
gi|384433709|ref|YP_005643067.1| RNA methylase [Sulfolobus solfataricus 98/2]
gi|13813389|gb|AAK40591.1| Proliferating-cell nucleolar antigen p120 homolog [Sulfolobus
solfataricus P2]
gi|261601863|gb|ACX91466.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus solfataricus 98/2]
Length = 339
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 90/213 (42%), Gaps = 35/213 (16%)
Query: 18 FLDFLKENGLDPSVYSAADSTPRYIR--------------LKTGNEADLEEIEAELKCKL 63
FLD++ E L+ ++S + Y+ LKT + LEEI E L
Sbjct: 33 FLDYMIERYLN--MFSTEEELEEYLNSCSFPLKKSIRCNTLKTDCK-KLEEIMLEKGFVL 89
Query: 64 EKVVWLSGFYSL---PPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
EKV WL Y + PP + +++ Y G + AS LN S D VLD+ AA
Sbjct: 90 EKVKWLQHGYVVKRTPPKPSLGSTLEYLMGYYHIQGLASMVPAYVLNPSYDDFVLDMAAA 149
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG---------DRCRLFVADG 171
PG K + I+ + G V V+ R R+ A + + + LG D L +
Sbjct: 150 PGGKTTQLSQIMQNKGLVIAVEKKRSRIRALLSNVNR--LGAENVVLIKTDALNLININK 207
Query: 172 TTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTS 204
+ F ++LLD L +KD T R T+
Sbjct: 208 SQFD----KILLDAPCSGEGLIQKDPTRRYKTT 236
>gi|365925225|ref|ZP_09447988.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus mali KCTC 3596
= DSM 20444]
gi|420266577|ref|ZP_14769035.1| 16S rRNA methyltransferase [Lactobacillus mali KCTC 3596 = DSM
20444]
gi|394425157|gb|EJE98173.1| 16S rRNA methyltransferase [Lactobacillus mali KCTC 3596 = DSM
20444]
Length = 443
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
++++ +++GKI D ++G V A+N++ + VLD CAAPG K I D + +G+VT
Sbjct: 223 VSSTRLFEEGKIMLQDESAGLVVEAMNLNGDEQVLDACAAPGGKTMQIADYL-RTGTVTA 281
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVL 192
+D+ +H++ + +K ++ D L +P S N +L
Sbjct: 282 LDIHKHKVKLIKENARKCGFEEKVNSIQLDAR-----KLNEHFEPESFNQIL 328
>gi|254302720|ref|ZP_04970078.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
gi|422338460|ref|ZP_16419420.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
nucleatum subsp. polymorphum F0401]
gi|148322912|gb|EDK88162.1| rRNA methyltransferase [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
gi|355372376|gb|EHG19717.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
nucleatum subsp. polymorphum F0401]
Length = 434
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K GKI DA+S A L + + VLD+CAAPG K ++ + + +SG V
Sbjct: 211 IINSEEFKTGKIIAQDASSYLAAKNLGVMPNELVLDICAAPGGKTAVLAEEMKNSGEVIA 270
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+D+ +H++ T ++K + D + V D
Sbjct: 271 IDIHQHKIKLIDTNMKKLGI-DIVKAIVIDA 300
>gi|363741020|ref|XP_415710.3| PREDICTED: putative methyltransferase NSUN5 [Gallus gallus]
Length = 465
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 57/143 (39%), Gaps = 20/143 (13%)
Query: 35 ADSTPRYIR---LKT-----------------GNEADLEEIEAELKCKLEKVVWLSGFYS 74
A PRY+R LKT G +EE++ K + L
Sbjct: 131 APQVPRYVRVNVLKTSVDDVVEFFKRHGYSFLGRANSVEELKTLSGKKFMLDLHLPELLV 190
Query: 75 LPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD 134
PP S Y G I D AS L+ SAG HV+D CAAPG K + I+ +
Sbjct: 191 FPPQTDFHDSRLYTSGHIILQDKASCLPAFLLSPSAGSHVIDACAAPGNKTSHLAAILKN 250
Query: 135 SGSVTGVDVARHRLAACRTLLQK 157
G + DV RLA T+L +
Sbjct: 251 KGHIFAFDVDTKRLATMNTMLMR 273
>gi|229581588|ref|YP_002839987.1| RNA methylase [Sulfolobus islandicus Y.N.15.51]
gi|228012304|gb|ACP48065.1| RNA methylase, NOL1/NOP2/sun family [Sulfolobus islandicus
Y.N.15.51]
Length = 339
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 17 AFLDFLKENGLDPSVYSAADSTPRYIR-----LKTGNEAD--------LEEIEAELKCKL 63
FLD++ E L+ ++S+ + Y+ LK + LEE+ +E L
Sbjct: 32 GFLDYMIERYLN--MFSSKEELEEYLNSCSFPLKKSIRCNTLRTDCKKLEEMMSEKGFIL 89
Query: 64 EKVVWLSGFYSL---PPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
EKV WL Y + PP + +++ Y G + AS LN S D VLD+ AA
Sbjct: 90 EKVKWLQHGYIIKRTPPMPSLGSTLEYLMGYYHIQGLASMVPAYVLNPSQDDFVLDMAAA 149
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAA 150
PG K + I+ + G V V+ R R+ A
Sbjct: 150 PGGKTTQVSQIMQNKGLVVAVEKKRSRIRA 179
>gi|222529210|ref|YP_002573092.1| RNA methylase [Caldicellulosiruptor bescii DSM 6725]
gi|222456057|gb|ACM60319.1| RNA methylase, NOL1/NOP2/sun family [Caldicellulosiruptor bescii
DSM 6725]
Length = 455
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 12 LPLPEAFLDFLKE---NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVW 68
+ LPE FL ++E + D + + + R+ T + ++E ++ + E++ W
Sbjct: 1 MNLPEEFLSKMREILNDEFDQFIKIYDFDSYKGFRVNTA-KVSVKEFIDKMGIEFERIPW 59
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
+ +++++ Y G +Y + ++ V AL++ G+ VLDLCAAPG K I
Sbjct: 60 CKDGFFYTEELRLSKHPYYFAGLVYIQEPSAMFPVEALDVKEGEKVLDLCAAPGGKSIQI 119
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF-----VAD--GTTFSLAPLRL 181
+G +G + DV R+ A ++ L + L +A+ G F ++
Sbjct: 120 AARLGQNGLLISNDVKPSRIKALVKNVENLGLTNVVILNNKPKEIAESYGAYFD----KI 175
Query: 182 LLD-PGSCNSVLQEKDDTFREWTSRIPWK 209
L+D P S + ++ ++WTS P K
Sbjct: 176 LVDAPCSGEGMFRKDPTAAKKWTSNHPEK 204
>gi|420221991|ref|ZP_14726916.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH08001]
gi|420224854|ref|ZP_14729692.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH06004]
gi|394290022|gb|EJE33892.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH08001]
gi|394294257|gb|EJE37943.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH06004]
Length = 435
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K+G I D +S +N+ D VLD C+APG K C + +I+ G V
Sbjct: 219 VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ + ++K L + + F D T + ++L+D P S VL+ K
Sbjct: 279 TDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVYDKMYDKILVDAPCSGLGVLRHK 334
>gi|27467810|ref|NP_764447.1| RNA-binding Sun protein [Staphylococcus epidermidis ATCC 12228]
gi|293366818|ref|ZP_06613494.1| RNA methyltransferase Sun [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417656552|ref|ZP_12306235.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU028]
gi|417658902|ref|ZP_12308515.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU045]
gi|417909812|ref|ZP_12553545.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU037]
gi|418605430|ref|ZP_13168755.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU041]
gi|418606347|ref|ZP_13169628.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU057]
gi|418609800|ref|ZP_13172934.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU065]
gi|418616486|ref|ZP_13179410.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU120]
gi|418622181|ref|ZP_13184937.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU123]
gi|418628991|ref|ZP_13191507.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU127]
gi|418664830|ref|ZP_13226296.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU081]
gi|419768657|ref|ZP_14294773.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-250]
gi|419772571|ref|ZP_14298602.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-K]
gi|420182887|ref|ZP_14689020.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM049]
gi|420187578|ref|ZP_14693598.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM039]
gi|420197109|ref|ZP_14702833.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM020]
gi|420202069|ref|ZP_14707664.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM018]
gi|420214303|ref|ZP_14719582.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH05005]
gi|420216133|ref|ZP_14721355.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH05001]
gi|420219998|ref|ZP_14724988.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH04008]
gi|420227008|ref|ZP_14731781.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH05003]
gi|420229330|ref|ZP_14734036.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH04003]
gi|420231689|ref|ZP_14736334.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH051668]
gi|27315354|gb|AAO04489.1|AE016746_279 RNA-binding Sun protein [Staphylococcus epidermidis ATCC 12228]
gi|291319119|gb|EFE59489.1| RNA methyltransferase Sun [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329736213|gb|EGG72485.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU028]
gi|329736541|gb|EGG72807.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU045]
gi|341652421|gb|EGS76209.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU037]
gi|374402527|gb|EHQ73552.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU041]
gi|374406136|gb|EHQ77039.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU065]
gi|374408300|gb|EHQ79131.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU057]
gi|374410276|gb|EHQ81037.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU081]
gi|374820564|gb|EHR84640.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU120]
gi|374827556|gb|EHR91418.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU123]
gi|374834985|gb|EHR98616.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU127]
gi|383359198|gb|EID36628.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-K]
gi|383359483|gb|EID36906.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-250]
gi|394249350|gb|EJD94563.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM049]
gi|394256020|gb|EJE00956.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM039]
gi|394265916|gb|EJE10562.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM020]
gi|394270042|gb|EJE14565.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM018]
gi|394283668|gb|EJE27833.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH05005]
gi|394287005|gb|EJE30979.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH04008]
gi|394292583|gb|EJE36325.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH05001]
gi|394297509|gb|EJE41106.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH05003]
gi|394299096|gb|EJE42647.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH04003]
gi|394302231|gb|EJE45679.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH051668]
Length = 435
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K+G I D +S +N+ D VLD C+APG K C + +I+ G V
Sbjct: 219 VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ + ++K L + + F D T + ++L+D P S VL+ K
Sbjct: 279 TDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVYDKMYDKILVDAPCSGLGVLRHK 334
>gi|420234376|ref|ZP_14738940.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH051475]
gi|394304338|gb|EJE47744.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIH051475]
Length = 435
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K+G I D +S +N+ D VLD C+APG K C + +I+ G V
Sbjct: 219 VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ + ++K L + + F D T + ++L+D P S VL+ K
Sbjct: 279 TDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVYDKMYDKILVDAPCSGLGVLRHK 334
>gi|391231805|ref|ZP_10268011.1| tRNA/rRNA cytosine-C5-methylase [Opitutaceae bacterium TAV1]
gi|391221466|gb|EIP99886.1| tRNA/rRNA cytosine-C5-methylase [Opitutaceae bacterium TAV1]
Length = 429
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 41 YIRLKTGNEADLEEIEAELKCK---LEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDA 97
++RL+T A + +EAEL + +E+ L + LPPD + ++ +Y+ G++ D
Sbjct: 164 WLRLQTATPAGVAAVEAELAGRGWPVERFEALPTAWRLPPDAAVTSTESYRDGRVEVQDL 223
Query: 98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157
S + + + G LD CA G K + ++G G V D+ LA R Q+
Sbjct: 224 GSQFLIETVAPAPGGRWLDACAGAGGKTLQLAQLLGPQGRVEAHDIRAAALAELRRRAQR 283
Query: 158 YALGD 162
+
Sbjct: 284 GGFAN 288
>gi|326931128|ref|XP_003211686.1| PREDICTED: e3 ubiquitin-protein ligase TRIM50-like [Meleagris
gallopavo]
Length = 818
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 20/141 (14%)
Query: 37 STPRYIR---LKT-----------------GNEADLEEIEAELKCKLEKVVWLSGFYSLP 76
+ PRY+R LKT G + +EE++ K + L P
Sbjct: 485 TVPRYVRVNVLKTCMDDVVEFFKRQGYSFLGRASSVEELKILSGKKFLLDIHLPELLVFP 544
Query: 77 PDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSG 136
P + Y G I D AS L+ SAG HV+D CAAPG K + I+ + G
Sbjct: 545 PQTDFHDNRLYTSGHIILQDKASCLPAFLLSPSAGSHVIDACAAPGNKTSHLAAILKNKG 604
Query: 137 SVTGVDVARHRLAACRTLLQK 157
+ DV RLA T+L +
Sbjct: 605 HIFAFDVDTKRLATMNTMLMR 625
>gi|251810647|ref|ZP_04825120.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
BCM-HMP0060]
gi|282876351|ref|ZP_06285218.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis SK135]
gi|417913398|ref|ZP_12557065.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU109]
gi|418624473|ref|ZP_13187148.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU125]
gi|420169761|ref|ZP_14676339.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM070]
gi|420172783|ref|ZP_14679281.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM067]
gi|420194045|ref|ZP_14699874.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM021]
gi|420209504|ref|ZP_14714941.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM003]
gi|421607281|ref|ZP_16048527.1| 16S rRNA methyltransferase B [Staphylococcus epidermidis AU12-03]
gi|251805807|gb|EES58464.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
BCM-HMP0060]
gi|281295376|gb|EFA87903.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis SK135]
gi|341655680|gb|EGS79404.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU109]
gi|374827702|gb|EHR91563.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU125]
gi|394241460|gb|EJD86874.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM067]
gi|394243061|gb|EJD88435.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM070]
gi|394266743|gb|EJE11368.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM021]
gi|394278951|gb|EJE23263.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM003]
gi|406657073|gb|EKC83466.1| 16S rRNA methyltransferase B [Staphylococcus epidermidis AU12-03]
Length = 435
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K+G I D +S +N+ D VLD C+APG K C + +I+ G V
Sbjct: 219 VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ + ++K L + + F D T + ++L+D P S VL+ K
Sbjct: 279 TDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVYDKMYDKILVDAPCSGLGVLRHK 334
>gi|417910722|ref|ZP_12554438.1| putative ribosomal RNA small subunit methyltransferase B
[Staphylococcus epidermidis VCU105]
gi|341654910|gb|EGS78646.1| putative ribosomal RNA small subunit methyltransferase B
[Staphylococcus epidermidis VCU105]
Length = 301
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K+G I D +S +N+ D VLD C+APG K C + +I+ G V
Sbjct: 85 VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDA 144
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ + ++K L + + F D T + ++L+D P S VL+ K
Sbjct: 145 TDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVYDKMYDKILVDAPCSGLGVLRHK 200
>gi|423138349|ref|ZP_17125992.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
nucleatum subsp. animalis F0419]
gi|371958387|gb|EHO76106.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
nucleatum subsp. animalis F0419]
Length = 435
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 80/164 (48%), Gaps = 10/164 (6%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPR--YIRLKTG----NEADLEEIEAELKCKLEKVV 67
+P+ F D L++ D ++ A S + Y+ ++ NE + E+ K ++ +
Sbjct: 142 IPKWFYDTLEKQYGDNNLKQAITSLKKVPYLSVRINKLKYNEKEFEKFLE--KNNIQIIK 199
Query: 68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
+ Y + + I S +K GKI DA+S A L + + + VLD+CAAPG K +
Sbjct: 200 KVDTVYYVNSSL-IINSEEFKIGKIIAQDASSYLAAKNLGVLSNELVLDICAAPGGKTAV 258
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+ + + + G + +D+ +H++ T ++K + D + V D
Sbjct: 259 LAEQMENKGEIIAIDIHQHKIKLIETNMKKLGI-DIVKAIVMDA 301
>gi|418613993|ref|ZP_13176983.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU118]
gi|374821862|gb|EHR85903.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU118]
Length = 435
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K+G I D +S +N+ D VLD C+APG K C + +I+ G V
Sbjct: 219 VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ + ++K L + + F D T + ++L+D P S VL+ K
Sbjct: 279 TDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVYDKMYDKILVDAPCSGLGVLRHK 334
>gi|449276528|gb|EMC85000.1| Putative methyltransferase NSUN5, partial [Columba livia]
Length = 334
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 58/143 (40%), Gaps = 20/143 (13%)
Query: 35 ADSTPRYIR---LKT-----------------GNEADLEEIEAELKCKLEKVVWLSGFYS 74
A PRY+R LKT G A +EE+ A K + L
Sbjct: 1 ASQVPRYVRVNSLKTCVDDVVDFFKRQGYSYLGKAASVEELSALSGKKFLLDLHLPELLV 60
Query: 75 LPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD 134
PP ++ Y G I D AS L+ + G HV+D CAAPG K + I+ +
Sbjct: 61 FPPQTDFHDNVLYTSGHIILQDKASCLPAFLLSPAPGSHVIDACAAPGNKTSHLAAILQN 120
Query: 135 SGSVTGVDVARHRLAACRTLLQK 157
G + DV RLA T+L +
Sbjct: 121 KGQIFAFDVDTKRLATMNTMLMR 143
>gi|418633997|ref|ZP_13196395.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU129]
gi|420177392|ref|ZP_14683728.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM057]
gi|420179235|ref|ZP_14685530.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM053]
gi|420189611|ref|ZP_14695579.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM037]
gi|420204139|ref|ZP_14709699.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM015]
gi|374837989|gb|EHS01546.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU129]
gi|394247776|gb|EJD93018.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM057]
gi|394254041|gb|EJD99023.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM053]
gi|394260946|gb|EJE05748.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM037]
gi|394274153|gb|EJE18578.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM015]
Length = 435
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K+G I D +S +N+ D VLD C+APG K C + +I+ G V
Sbjct: 219 VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ + ++K L + + F D T + ++L+D P S VL+ K
Sbjct: 279 TDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVYDKMYDKILVDAPCSGLGVLRHK 334
>gi|167040389|ref|YP_001663374.1| sun protein [Thermoanaerobacter sp. X514]
gi|256752273|ref|ZP_05493136.1| sun protein [Thermoanaerobacter ethanolicus CCSD1]
gi|300914473|ref|ZP_07131789.1| sun protein [Thermoanaerobacter sp. X561]
gi|307724291|ref|YP_003904042.1| sun protein [Thermoanaerobacter sp. X513]
gi|166854629|gb|ABY93038.1| sun protein [Thermoanaerobacter sp. X514]
gi|256748841|gb|EEU61882.1| sun protein [Thermoanaerobacter ethanolicus CCSD1]
gi|300889408|gb|EFK84554.1| sun protein [Thermoanaerobacter sp. X561]
gi|307581352|gb|ADN54751.1| sun protein [Thermoanaerobacter sp. X513]
Length = 444
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 66 VVWLSGFY---SLPPDIKIATS-MAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
+ + G+Y +L DIK S YK+G IY D AS LN G+ V+D+CAAP
Sbjct: 200 IAYKKGYYLEEALYIDIKNPESHQLYKEGFIYIQDEASMLVSKILNPKEGETVIDVCAAP 259
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
G K I ++ ++G V D+ HRL +
Sbjct: 260 GGKTTHIAQLMKNNGKVVAFDLHPHRLELIK 290
>gi|57866755|ref|YP_188366.1| sun protein [Staphylococcus epidermidis RP62A]
gi|242242499|ref|ZP_04796944.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
W23144]
gi|418327694|ref|ZP_12938836.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis 14.1.R1.SE]
gi|418612965|ref|ZP_13175986.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU117]
gi|418626770|ref|ZP_13189366.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU126]
gi|418631938|ref|ZP_13194382.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU128]
gi|420175015|ref|ZP_14681460.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM061]
gi|420192761|ref|ZP_14698618.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM023]
gi|57637413|gb|AAW54201.1| sun protein [Staphylococcus epidermidis RP62A]
gi|242234073|gb|EES36385.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
W23144]
gi|365232724|gb|EHM73710.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis 14.1.R1.SE]
gi|374817275|gb|EHR81460.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU117]
gi|374831314|gb|EHR95056.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU126]
gi|374833607|gb|EHR97282.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU128]
gi|394244301|gb|EJD89646.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM061]
gi|394260577|gb|EJE05386.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM023]
Length = 435
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K+G I D +S +N+ D VLD C+APG K C + +I+ G V
Sbjct: 219 VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ + ++K L + + F D T + ++L+D P S VL+ K
Sbjct: 279 TDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVYDKMYDKILVDAPCSGLGVLRHK 334
>gi|260495441|ref|ZP_05815567.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
3_1_33]
gi|260196978|gb|EEW94499.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
3_1_33]
Length = 435
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K GKI DA+S A L++ + VLD+CAAPG K ++ + + + G +
Sbjct: 212 IINSEEFKTGKIIAQDASSYLAAKNLSVMPNELVLDICAAPGGKTAVLAEQMENKGEIIA 271
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+D+ +H++ T ++K + D + V D
Sbjct: 272 IDIHQHKIKLIETNMKKLGI-DIVKAIVMDA 301
>gi|152985582|ref|YP_001345414.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
aeruginosa PA7]
gi|150960740|gb|ABR82765.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
aeruginosa PA7]
Length = 434
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ D A+ A L + G VLD C APG K C +L+I + G V VD+ +
Sbjct: 220 FAEGRVSVQDEAAQLAAELLESAPGQRVLDACCAPGGKTCHLLEIQPELGEVVAVDLEQS 279
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R LQ+ LG RL AD G + P R+LLD P S V++ D
Sbjct: 280 RLLRVRENLQR--LGLEARLVAADARATGEWWDGQPFQRILLDAPCSATGVIRRHPD 334
>gi|421526922|ref|ZP_15973528.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum ChDC
F128]
gi|402257030|gb|EJU07506.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum ChDC
F128]
Length = 434
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K GKI DA+S A L + + VLD+CAAPG K ++ + + +SG V
Sbjct: 211 IINSEEFKAGKIIAQDASSYLAAKNLGVMPNELVLDICAAPGGKTAVLAEEMKNSGEVIA 270
Query: 141 VDVARHRLAACRTLLQKYALG 161
+D+ +H++ T ++K +
Sbjct: 271 IDIHQHKIKLIDTNMKKLGIN 291
>gi|20093483|ref|NP_613330.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19886312|gb|AAM01260.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 444
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 73/153 (47%), Gaps = 15/153 (9%)
Query: 14 LPEAFLDFLK----ENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWL 69
P F+D+++ E+ ++ + + +Y+R+ T AD++E+ L E+ V
Sbjct: 150 FPPDFVDYVRRVLPEDEIEDFLRACNKPAVKYVRVNTLR-ADVDEVRERLA---EEGVLT 205
Query: 70 SGFYSLP-------PDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPG 122
+P +I I + A+K+G ++ D AS A L+ G+ V+DLCAAPG
Sbjct: 206 EPDEHIPDLLRVVEEEIPIVRTEAWKEGLVFTQDKASAAVAHVLDPQPGEFVVDLCAAPG 265
Query: 123 AKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
K L ++ G + VD + RL A R L
Sbjct: 266 GKTLHALCLMEGEGEILAVDKSDWRLDAMREKL 298
>gi|83596072|gb|ABC25429.1| proliferating-cell nucleolar antigen [uncultured marine bacterium
Ant4D5]
Length = 511
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 10/159 (6%)
Query: 33 SAADSTPRYIRLKTG--NEADLEEIEAELKCKLEKVVWLSGFYSLPPDIK-IATSMAYKQ 89
+A P R++ G +EA L E AE + L F+ + + I+ ++ +
Sbjct: 41 AAGRPEPTVFRIRAGQVSEAVLLERLAEQGFVTRPLTGLPSFHQVEQAPRAISQTLEHWL 100
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G IY A++G A + +S G VLD+C+APG K + +++GD G + +++ R+
Sbjct: 101 GLIYIQQASTGVAAPEVGVSPGQRVLDMCSAPGGKTTHLAELMGDRGCLVAGEISEPRI- 159
Query: 150 ACRTLLQK-YALGDRCRLFVA-DGTTFSLAPL--RLLLD 184
R LL Y LG L VA DG F L +LLD
Sbjct: 160 --RGLLGNVYRLGHPNILVVAGDGREFPEGALFDHVLLD 196
>gi|327400017|ref|YP_004340856.1| Fmu (Sun) domain-containing protein [Archaeoglobus veneficus SNP6]
gi|327315525|gb|AEA46141.1| Fmu (Sun) domain protein [Archaeoglobus veneficus SNP6]
Length = 440
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 27/201 (13%)
Query: 5 LDGEISKLP----------LPEAFLDFL-----KENGLDPSVYSAADSTPRYIRLKTGNE 49
L+ E S+LP PE ++++ +E ++ + + ++T Y+R+ NE
Sbjct: 130 LNSETSRLPEVQRLAYRYFHPEWYVEYAIKLLGREQAIELMIANMQNTT--YVRV---NE 184
Query: 50 --ADLEEIEAELK--CKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSA 105
A +E + L+ C +E+ F + D +T + GK D AS A
Sbjct: 185 LKASIESVRKYLERYCVIEETCLPEVFKVVAWDRHPSTLEWHADGKYVVQDLASTLVAHA 244
Query: 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD-RC 164
+ G+ VLDL AAPG K I ++ + G + VD + R+ + ++K + C
Sbjct: 245 MKPEPGERVLDLAAAPGLKTSHIAMLMENRGKIMAVDNSEERVRRMKAKMKKLGVEIVEC 304
Query: 165 RLFVADGTTFSLAPLRLLLDP 185
R VADG F R+LLDP
Sbjct: 305 R--VADGVKFRWKADRVLLDP 323
>gi|193700064|ref|XP_001946119.1| PREDICTED: putative methyltransferase NSUN5-like [Acyrthosiphon
pisum]
Length = 459
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y G + D AS A LN + VLD+CAAPG K + I+ ++G + VD ++
Sbjct: 80 YNNGSLIVQDKASCLAAYLLNPKSNSTVLDMCAAPGMKTSHLAAIMQNTGKLYAVDRSKE 139
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSLAP--LRLLLDPGSC 188
R + +L+KY + + F D TF +LLDP SC
Sbjct: 140 RFYILQNMLEKYGVQN-VETFNMDALTFPYYDDVKYILLDP-SC 181
>gi|417645994|ref|ZP_12295879.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU144]
gi|329730006|gb|EGG66397.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU144]
Length = 393
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K+G I D +S +N+ D VLD C+APG K C + +I+ G V
Sbjct: 219 VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ + ++K L + + F D T + ++L+D P S VL+ K
Sbjct: 279 TDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVYDKMYDKILVDAPCSGLGVLRHK 334
>gi|20807946|ref|NP_623117.1| tRNA and rRNA cytosine-C5-methylase [Thermoanaerobacter
tengcongensis MB4]
gi|254479565|ref|ZP_05092880.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium
pacificum DSM 12653]
gi|20516516|gb|AAM24721.1| tRNA and rRNA cytosine-C5-methylases [Thermoanaerobacter
tengcongensis MB4]
gi|214034503|gb|EEB75262.1| ribosomal RNA small subunit methyltransferase B [Carboxydibrachium
pacificum DSM 12653]
Length = 443
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 8/107 (7%)
Query: 56 EAELKCKLEKVVWLSGFY---SLPPDIKIATSMA-YKQGKIYGIDAASGAAVSALNISAG 111
E + K K E + + G+Y +L D+K S YK G I+ D AS L+ G
Sbjct: 189 ELQEKLKREDISYKKGYYLEEALYIDLKNPESHPIYKDGLIHPQDEASMLVSRILSPQKG 248
Query: 112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA----ACRTL 154
+ +LD+CAAPG K I I+ ++G V D+ HRL CR L
Sbjct: 249 ERILDVCAAPGGKTTHISQIMENTGEVVAFDLHPHRLKLIEENCRRL 295
>gi|420165246|ref|ZP_14671950.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM088]
gi|394236413|gb|EJD81947.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM088]
Length = 435
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K+G I D +S +N+ D VLD C+APG K C + I+ G V
Sbjct: 219 VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAQILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ + ++K L + + F D T + ++L+D P S VL+ K
Sbjct: 279 TDIHEHKINLIKQNIKKLKLNN-IKAFQHDATEVYDKMYDKILVDAPCSGLGVLRHK 334
>gi|237745177|ref|ZP_04575658.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 7_1]
gi|229432406|gb|EEO42618.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 7_1]
Length = 435
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K GKI DA+S A L + + + VLD+CAAPG K ++ + + + G +
Sbjct: 212 IIISEEFKTGKIIAQDASSYLAAKNLGVLSNELVLDICAAPGGKTAVLAEQMENKGEIIA 271
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+D+ +H++ T ++K + D + V D
Sbjct: 272 IDIHQHKIKLIETNMKKLGI-DIVKAIVMDA 301
>gi|326803898|ref|YP_004321716.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650964|gb|AEA01147.1| ribosomal RNA small subunit methyltransferase B [Aerococcus urinae
ACS-120-V-Col10a]
Length = 470
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 82 ATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGV 141
A S +++G I D A+ AV LN AGD VLD CAAPG K + + +G +G V
Sbjct: 245 AQSELFEKGVITIQDEAASLAVDILNPKAGDRVLDACAAPGGKTVQLAEYVGKTGQVLAF 304
Query: 142 DVARHRL 148
D+A ++L
Sbjct: 305 DIAENKL 311
>gi|419544036|ref|ZP_14083004.1| NOL1/NOP2/sun family protein [Campylobacter coli 2553]
gi|380525722|gb|EIA51226.1| NOL1/NOP2/sun family protein [Campylobacter coli 2553]
Length = 291
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 43 RLKTGN---EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAA 98
RLK N E + +++ E K KL + +L D I +SM A+ + K Y + A
Sbjct: 33 RLKCDNLTLEREFQDLNLEYK-KLNEYCYLFK----ACDKSILSSMQAFNEFKFYIQNYA 87
Query: 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
S L++ AG VLD+CAAPG K + + + + G + + ++ R + L+ Y
Sbjct: 88 SYLCALNLDVKAGQSVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNY 147
Query: 159 ALGDRCRLFVADGTTF-SLAPL---RLLLD 184
G + R+F+ DG +L PL ++LLD
Sbjct: 148 --GVKARVFMKDGKNIGNLCPLKFDKILLD 175
>gi|406968986|gb|EKD93724.1| Fmu (Sun) protein [uncultured bacterium]
Length = 308
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 85/209 (40%), Gaps = 19/209 (9%)
Query: 16 EAFLDFLK-------------ENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCK 62
E FLD+ + E + + + P +R E + + K +
Sbjct: 11 EGFLDYYRKLHIKTEPATSKEEKDFNEWLNTLVKPNPPVLRFNPKYEKKCAALWKKNKWE 70
Query: 63 LEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
+ + W P + + T + +QG Y +A+S V AL+ G+ +LD CAAP
Sbjct: 71 WKTLSWYPHALQWPTKLPLETQIPGEEQGWFYRQNASSLIPVLALDPQPGEVILDACAAP 130
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF-VADGTTFSLAPL- 179
G K I + + + G++ D++ R + +L+ Y L D + V G F P
Sbjct: 131 GGKTVFIAERMKNKGTLIANDLSLSRRQRLKQVLKTYQLEDFATMCGVHGGVLFQKYPTG 190
Query: 180 --RLLLD-PGSCNSVLQEKDDTFREWTSR 205
++LLD P S + + +W+ +
Sbjct: 191 FDKILLDAPCSSEKHVYTNEKYLNQWSYK 219
>gi|289764700|ref|ZP_06524078.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D11]
gi|289716255|gb|EFD80267.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. D11]
Length = 435
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K GKI DA+S A L + + + VLD+CAAPG K ++ + + + G +
Sbjct: 212 IIISEEFKTGKIIAQDASSYLAAKNLGVLSNELVLDICAAPGGKTAVLAEQMENKGEIIA 271
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+D+ +H++ T ++K + D + V D
Sbjct: 272 IDIHQHKIKLIETNMKKLGI-DIVKAIVMDA 301
>gi|386040419|ref|YP_005959373.1| ribosomal RNA small subunit methyltransferase F [Paenibacillus
polymyxa M1]
gi|343096457|emb|CCC84666.1| ribosomal RNA small subunit methyltransferase F [Paenibacillus
polymyxa M1]
Length = 559
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 97/207 (46%), Gaps = 14/207 (6%)
Query: 9 ISKLPLPEAFLDFLKENGLDP--SVYSAADSTPRY-IRLKTGNEADLEEIEAELKCKLEK 65
I + LP AF+ +++ D + +A D TP IR+ T + +E+ + +L
Sbjct: 4 IMGVQLPTAFVKRMEQLLGDEFEAFMAAYDHTPHAGIRVNT-LKIPVEDFKERSPFELRP 62
Query: 66 VVW-LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAK 124
+ W +GFY +P K Y G Y + ++ + V LN++ G+ VLDLCAAPG K
Sbjct: 63 IPWCATGFY-IPHGTKPGLHPYYHAGLYYVQEPSAMSPVELLNVAQGEAVLDLCAAPGGK 121
Query: 125 LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF-----VADGTTFSLAPL 179
I + SG + D++ R A ++ Y + + L +AD F
Sbjct: 122 STQIAAKLQGSGILVTNDISVDRTKALAKNVELYGVRNAVVLNESPDRIAD--AFPHFFN 179
Query: 180 RLLLD-PGSCNSVLQEKDDTFREWTSR 205
++L+D P S + ++ +D ++W +
Sbjct: 180 KILIDAPCSGEGMFRKDEDMAKQWETH 206
>gi|57167662|ref|ZP_00366802.1| Sun/nucleolar protein family protein VC1502 [Campylobacter coli
RM2228]
gi|305433169|ref|ZP_07402325.1| NOL1/NOP2/sun family protein [Campylobacter coli JV20]
gi|419538997|ref|ZP_14078344.1| NOL1/NOP2/sun family protein [Campylobacter coli 90-3]
gi|419541763|ref|ZP_14080901.1| NOL1/NOP2/sun family protein [Campylobacter coli 2548]
gi|419551184|ref|ZP_14089648.1| NOL1/NOP2/sun family protein [Campylobacter coli 2688]
gi|419551959|ref|ZP_14090282.1| NOL1/NOP2/sun family protein [Campylobacter coli 2692]
gi|419555019|ref|ZP_14093132.1| NOL1/NOP2/sun family protein [Campylobacter coli 2698]
gi|419556430|ref|ZP_14094415.1| NOL1/NOP2/sun family protein [Campylobacter coli 84-2]
gi|419559847|ref|ZP_14097500.1| NOL1/NOP2/sun family protein [Campylobacter coli 86119]
gi|419561685|ref|ZP_14099218.1| NOL1/NOP2/sun family protein [Campylobacter coli 1091]
gi|419566288|ref|ZP_14103549.1| NOL1/NOP2/sun family protein [Campylobacter coli 1148]
gi|419573010|ref|ZP_14109822.1| NOL1/NOP2/sun family protein [Campylobacter coli 1891]
gi|419592673|ref|ZP_14127918.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 9854]
gi|419600502|ref|ZP_14135258.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 23344]
gi|419604901|ref|ZP_14139356.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 9853]
gi|419608134|ref|ZP_14142331.1| NOL1/NOP2/sun family protein [Campylobacter coli H6]
gi|57020784|gb|EAL57448.1| Sun/nucleolar protein family protein VC1502 [Campylobacter coli
RM2228]
gi|304443870|gb|EFM36527.1| NOL1/NOP2/sun family protein [Campylobacter coli JV20]
gi|380516230|gb|EIA42367.1| NOL1/NOP2/sun family protein [Campylobacter coli 90-3]
gi|380524406|gb|EIA50018.1| NOL1/NOP2/sun family protein [Campylobacter coli 2548]
gi|380528927|gb|EIA54134.1| NOL1/NOP2/sun family protein [Campylobacter coli 2688]
gi|380530957|gb|EIA56000.1| NOL1/NOP2/sun family protein [Campylobacter coli 2698]
gi|380532786|gb|EIA57753.1| NOL1/NOP2/sun family protein [Campylobacter coli 2692]
gi|380534704|gb|EIA59465.1| NOL1/NOP2/sun family protein [Campylobacter coli 84-2]
gi|380537924|gb|EIA62456.1| NOL1/NOP2/sun family protein [Campylobacter coli 86119]
gi|380543110|gb|EIA67330.1| NOL1/NOP2/sun family protein [Campylobacter coli 1091]
gi|380546813|gb|EIA70750.1| NOL1/NOP2/sun family protein [Campylobacter coli 1148]
gi|380552550|gb|EIA76107.1| NOL1/NOP2/sun family protein [Campylobacter coli 1891]
gi|380571933|gb|EIA94284.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 9854]
gi|380579027|gb|EIB00836.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 9853]
gi|380582905|gb|EIB04500.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 23344]
gi|380585911|gb|EIB07236.1| NOL1/NOP2/sun family protein [Campylobacter coli H6]
Length = 291
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 43 RLKTGN---EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAA 98
RLK N E + +++ E K KL + +L D I +SM A+ + K Y + A
Sbjct: 33 RLKCDNLTLEREFQDLNLEYK-KLNEYCYLFK----ACDKSILSSMQAFNEFKFYIQNYA 87
Query: 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
S L++ AG VLD+CAAPG K + + + + G + + ++ R + L+ Y
Sbjct: 88 SYLCALNLDVKAGQSVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNY 147
Query: 159 ALGDRCRLFVADGTTF-SLAPL---RLLLD 184
G + R+F+ DG +L PL ++LLD
Sbjct: 148 --GVKARVFMKDGKNIGNLCPLKFDKILLD 175
>gi|20094111|ref|NP_613958.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19887109|gb|AAM01888.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 307
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 79/190 (41%), Gaps = 22/190 (11%)
Query: 32 YSAADSTPRYIRLKTGNEADLEEIEAELK---CKLEKVVWLSGFYSLPPDIKIATSMAYK 88
Y P Y+R+ T +AD+EE+ L+ +L + F L + +S+ +
Sbjct: 25 YLLEGRPPTYVRVNT-LKADVEEVVENLETAGVELAETPLSYAFRVLSSPGPLGSSLEHV 83
Query: 89 QGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRL 148
G +Y D AS L+ V+DLCAAPG+K + ++G G V VD R+
Sbjct: 84 AGYLYLQDLASMVPPELLDPEPPGPVIDLCAAPGSKTTQLAQLLGGEGVVLAVDADPRRV 143
Query: 149 AA---------CRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKDDTF 199
A C ++ +A D RL ++ AP LL P S L
Sbjct: 144 RALVHNVNRLGCVNVIVAHA--DAARLRIS-------APFLLLDPPCSGEGTLHRDPHAL 194
Query: 200 REWTSRIPWK 209
R WT + P +
Sbjct: 195 RTWTPKKPGR 204
>gi|225574656|ref|ZP_03783266.1| hypothetical protein RUMHYD_02733 [Blautia hydrogenotrophica DSM
10507]
gi|225038124|gb|EEG48370.1| NOL1/NOP2/sun family protein [Blautia hydrogenotrophica DSM 10507]
Length = 444
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 10/158 (6%)
Query: 53 EEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGD 112
EE E+ ++K+ W+ Y P +++ + Y+ G Y + ++ + L ++ G+
Sbjct: 31 EEFESICPFPIKKIPWVPNGYFYPSEVRPSLHPYYRAGLYYLQEPSAMTPAACLPVTPGE 90
Query: 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
VLDLCAAPG K + + G + D++ R R LL+ L +FV +
Sbjct: 91 AVLDLCAAPGGKATELATKLAGQGILVANDISASR---ARALLRNLELFGASNIFVTNEI 147
Query: 173 T------FSLAPLRLLLD-PGSCNSVLQEKDDTFREWT 203
F ++LLD P S + ++ D +W+
Sbjct: 148 PEKMTRYFPEFFHKILLDAPCSGEGMFRKDDSLAADWS 185
>gi|237742476|ref|ZP_04572957.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 4_1_13]
gi|294785012|ref|ZP_06750300.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
3_1_27]
gi|229430124|gb|EEO40336.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 4_1_13]
gi|294486726|gb|EFG34088.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
3_1_27]
Length = 435
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K GKI DA+S A L + + VLD+CAAPG K ++ + + + G +
Sbjct: 212 IINSEEFKTGKIIAQDASSYLAAKNLGVMPNELVLDICAAPGGKTAVLTENMENRGEIIA 271
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+D+ +H++ T ++K + D + V D
Sbjct: 272 IDIHQHKIKLIETNMKKLGI-DIVKAIVMDA 301
>gi|418325013|ref|ZP_12936223.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU071]
gi|365228919|gb|EHM70091.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis VCU071]
Length = 435
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K+G I D +S +N+ D VLD C+APG K C + +I+ G V
Sbjct: 219 VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ + + K L + + F D T + ++L+D P S VL+ K
Sbjct: 279 TDIHEHKINLIKQNITKLKLNN-IKAFQHDATEVYDKMYDKILVDAPCSGLGVLRHK 334
>gi|420185478|ref|ZP_14691570.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM040]
gi|394254464|gb|EJD99433.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM040]
Length = 435
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K+G I D +S +N+ D VLD C+APG K C + +I+ G V
Sbjct: 219 VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ + + K L + + F D T + ++L+D P S VL+ K
Sbjct: 279 TDIHEHKINLIKQNITKLKLNN-IKAFQHDATEVYDKMYDKILVDAPCSGLGVLRHK 334
>gi|420163445|ref|ZP_14670192.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM095]
gi|420167574|ref|ZP_14674226.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM087]
gi|394235134|gb|EJD80708.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM095]
gi|394237602|gb|EJD83088.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis NIHLM087]
Length = 435
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K+G I D +S +N+ D VLD C+APG K C + +I+ G V
Sbjct: 219 VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ + ++K L + F D T + ++L+D P S VL+ K
Sbjct: 279 TDIHEHKINLIKQNIKKLKLNN-INAFQHDATEVYDKMYDKILVDAPCSGLGVLRHK 334
>gi|164687686|ref|ZP_02211714.1| hypothetical protein CLOBAR_01328 [Clostridium bartlettii DSM
16795]
gi|164603460|gb|EDQ96925.1| NOL1/NOP2/sun family protein [Clostridium bartlettii DSM 16795]
Length = 432
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 95/201 (47%), Gaps = 11/201 (5%)
Query: 12 LPLPEAFLDFLK---ENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVW 68
+ LPE FL+ +K ++ + + S ++ +RL T + + E L LE++ W
Sbjct: 2 ISLPEKFLEDVKVILQDEYEEFIDSYNENKTTGLRLNTMKMSKEKFQELNL-FDLEQIPW 60
Query: 69 LS-GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
+ GFY K + ++ G Y + ++ + V L+I GD VLD+CAAPG K
Sbjct: 61 TNEGFYYDESVCKPGKNPLHEAGVYYLQEPSAMSVVPKLDIQKGDRVLDMCAAPGGKSTY 120
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT----TFSLAPLRLLL 183
IL + D+G + ++ R+ A L+++ C + D T F+ ++++
Sbjct: 121 ILSQLDDTGLLVSNEINPIRINALGENLERFG-ARNCIITNTDSTRLRKAFTGYFDKIVI 179
Query: 184 D-PGSCNSVLQEKDDTFREWT 203
D P S + ++ ++WT
Sbjct: 180 DAPCSGEGMFRKDPVAIQDWT 200
>gi|225028496|ref|ZP_03717688.1| hypothetical protein EUBHAL_02773 [Eubacterium hallii DSM 3353]
gi|224954181|gb|EEG35390.1| NOL1/NOP2/sun family protein [Eubacterium hallii DSM 3353]
Length = 556
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 2/151 (1%)
Query: 14 LPEAFLDFLKEN-GLDPSVYSAADSTPRYIRLKTGN-EADLEEIEAELKCKLEKVVWLSG 71
LP++FLD +KE G D + R L+ + +LEE E L+KV W+S
Sbjct: 4 LPQSFLDSMKEILGEDYEAFLTGFDGQRQYGLRVNTLKMNLEEFERIAPFHLKKVPWISN 63
Query: 72 FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDI 131
Y + A Y G Y + ++ S L + G+ VLDLCAAPG K +
Sbjct: 64 GYFYNAEDVPAKHPFYSAGLYYLQEPSAMTPASRLKVQPGERVLDLCAAPGGKATELGAA 123
Query: 132 IGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
+ G + D+ R A L+ + + +
Sbjct: 124 LQGEGLLVANDINTARAKALLRNLELFGISN 154
>gi|418411636|ref|ZP_12984903.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis BVS058A4]
gi|410892362|gb|EKS40156.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
epidermidis BVS058A4]
Length = 435
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K+G I D +S +N+ D VLD C+APG K C + +I+ G V
Sbjct: 219 VVNSNAFKEGYISIQDKSSMMVAYVMNLGRDDKVLDACSAPGGKACHMAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ + ++K L + F D T + ++L+D P S VL+ K
Sbjct: 279 TDIHEHKINLIKQNIKKLKLNN-INAFQHDATEVYDKMYDKILVDAPCSGLGVLRHK 334
>gi|315231384|ref|YP_004071820.1| tRNA/RNA cytosine-C5-methylase [Thermococcus barophilus MP]
gi|315184412|gb|ADT84597.1| tRNA/RNA cytosine-C5-methylase [Thermococcus barophilus MP]
Length = 451
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 13/151 (8%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
YKQG D AS L G+ +LDL AAPG+K + ++ ++G + VD +
Sbjct: 238 YKQGYFVIQDLASAYVAHVLGPEKGERILDLAAAPGSKTFHVAHLMENTGEIIAVDYSLE 297
Query: 147 RLAACRTLLQKYALGDR-CRLFVADGTTFSLAPL--RLLLDPGSCNSVLQEKDDTFREWT 203
RL R ++ LG R +L ADG F R++LD C+S T+R++
Sbjct: 298 RLNKMREKMK--ILGVRNVKLVHADGMKFKEKEEFDRIILD-APCSS-----SGTYRQFP 349
Query: 204 SRIPWKERKRAVKARENAASKAIVRSEHPEL 234
+ W+ +R +K + KA++R+ + L
Sbjct: 350 E-VKWRFDERKIK-KVIQVQKAMLRNAYRNL 378
>gi|325680270|ref|ZP_08159830.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus
8]
gi|324107979|gb|EGC02235.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus albus
8]
Length = 429
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ + AY++G+ + D AS AL+ AGD VLDLCAAPG K I +++G+ G V
Sbjct: 221 VEKTKAYREGRFHVQDIASQLCCKALDPQAGDTVLDLCAAPGGKTFTIAEMMGNEGRVLA 280
Query: 141 VDVARHRL 148
D+ +R+
Sbjct: 281 FDLHPNRV 288
>gi|310641379|ref|YP_003946137.1| tRNA (cytosine-5-)-methyltransferase [Paenibacillus polymyxa SC2]
gi|309246329|gb|ADO55896.1| tRNA (Cytosine-5-)-methyltransferase [Paenibacillus polymyxa SC2]
Length = 555
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 95/202 (47%), Gaps = 14/202 (6%)
Query: 14 LPEAFLDFLKENGLDP--SVYSAADSTPRY-IRLKTGNEADLEEIEAELKCKLEKVVW-L 69
LP AF+ +++ D + +A D TP IR+ T + +E+ + +L + W
Sbjct: 5 LPTAFVKRMEQLLGDEFEAFMAAYDHTPHAGIRVNT-LKIPVEDFKERSPFELRPIPWCA 63
Query: 70 SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
+GFY +P K Y G Y + ++ + V LN++ G+ VLDLCAAPG K I
Sbjct: 64 TGFY-IPHGTKPGLHPYYHAGLYYVQEPSAMSPVELLNVAQGEAVLDLCAAPGGKSTQIA 122
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF-----VADGTTFSLAPLRLLLD 184
+ SG + D++ R A ++ Y + + L +AD F ++L+D
Sbjct: 123 AKLQGSGILVTNDISVDRTKALAKNVELYGVRNAVVLNESPDRIAD--AFPHFFNKILID 180
Query: 185 -PGSCNSVLQEKDDTFREWTSR 205
P S + ++ +D ++W +
Sbjct: 181 APCSGEGMFRKDEDMAKQWETH 202
>gi|224075639|ref|XP_002188018.1| PREDICTED: putative methyltransferase NSUN5 [Taeniopygia guttata]
Length = 431
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 67/166 (40%), Gaps = 21/166 (12%)
Query: 28 DPSVYSAADSTPRYIRLKT--------------------GNEADLEEIEAELKCKLEKVV 67
+ +V +AA PRY+R+ T G +EE++A K +
Sbjct: 124 EQAVSAAASQVPRYVRVNTLKTCVDDVIDFFKCQGYAYLGKANSVEELKALSGKKFLLDL 183
Query: 68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
L P + ++ Y G I D AS L AG HV+D CAAPG K
Sbjct: 184 HLPELLVFPSQTDLHDNLLYTSGHIILQDKASCLPAFLLGPVAGSHVIDACAAPGNKTSH 243
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173
+ I+ + G + DV R+A TLL + + C+L D T
Sbjct: 244 LAAILKNKGQIFAFDVDPKRVATTNTLLTRAGVTG-CQLVQQDFLT 288
>gi|210623494|ref|ZP_03293839.1| hypothetical protein CLOHIR_01789 [Clostridium hiranonis DSM 13275]
gi|210153552|gb|EEA84558.1| hypothetical protein CLOHIR_01789 [Clostridium hiranonis DSM 13275]
Length = 433
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 71/152 (46%), Gaps = 5/152 (3%)
Query: 12 LPLPEAFLDFLKE---NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVW 68
+ LPE FL+ +KE + D + S IR+ T + + + ++ L C E + W
Sbjct: 1 MNLPERFLNDVKELLGDEFDDFIKSYEQKKTTAIRVNT-MKMEKDRLKGLLDCNTEDIPW 59
Query: 69 LS-GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
G Y + K + + G Y + ++ + V +I GD VLD+CAAPG K
Sbjct: 60 AEEGLYYDEDECKPGRNPLHDSGAYYLQEPSAMSVVPKADIQEGDIVLDMCAAPGGKSTY 119
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159
IL + ++G + ++ R+ A L+++
Sbjct: 120 ILSKLNNTGLLVSNEINATRIKALGENLERFG 151
>gi|418637495|ref|ZP_13199814.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis VCU139]
gi|374838741|gb|EHS02276.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis VCU139]
Length = 435
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
A+K+G I D +S N+ A D VLD C+APG K C + +I+ +GSV D+
Sbjct: 224 AFKEGLISIQDKSSMFVAQLANLQAHDKVLDACSAPGGKACQMAEILAPTGSVDATDIHA 283
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTT-FSLAPLRLLLD-PGSCNSVLQEK 195
H++ + ++K L + F D T ++ ++L+D P S VL+ K
Sbjct: 284 HKINLIKYNIKKLGLNN-VHAFQHDATQPYTEMYDKILVDAPCSGLGVLRHK 334
>gi|317056478|ref|YP_004104945.1| sun protein [Ruminococcus albus 7]
gi|315448747|gb|ADU22311.1| sun protein [Ruminococcus albus 7]
Length = 431
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I + AY+QGK + D AS AL+ GD VLDLC+APG K I +++ + G V
Sbjct: 221 IEKTEAYRQGKFHVQDIASQLCCKALDPQPGDIVLDLCSAPGGKTFTIAEMMNNEGKVLA 280
Query: 141 VDVARHRLAACRTLLQKYAL 160
D+ +R+ R+ ++ L
Sbjct: 281 FDLHPNRVKLIRSGAERLGL 300
>gi|402297531|ref|ZP_10817298.1| 16S rRNA methyltransferase B [Bacillus alcalophilus ATCC 27647]
gi|401727206|gb|EJT00399.1| 16S rRNA methyltransferase B [Bacillus alcalophilus ATCC 27647]
Length = 448
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
AY+ G D +S AL AG+H+LD CAAPG K I +++ + GS+ VD+
Sbjct: 227 AYRSGLFTAQDESSMLVAKALGPKAGEHILDSCAAPGGKSTHIAELMNNEGSLLSVDLHE 286
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS 175
H++ R ++ L + AD FS
Sbjct: 287 HKVQLIREQAKRLDLS-MIEVVAADVRAFS 315
>gi|402839079|ref|ZP_10887572.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium OBRC8]
gi|402270618|gb|EJU19876.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium OBRC8]
Length = 436
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIR---LKTGNEADLEEIEAELKCKLEKVVWLS 70
+ + LD K + + S +D+ +IR LKT + DL+ +L K E + +
Sbjct: 159 IAQRLLDNYKNKFTEELLMSMSDTPNIFIRGNRLKTDID-DLKRSLQKLGNKFEIIDEEN 217
Query: 71 GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
SL I+ + Y+ G D AS AV AL+ ++VLD+CAAPG K + +
Sbjct: 218 MIVSLKNFKDISKNDMYRNGFFSVQDYASMKAVLALSPEPFENVLDICAAPGGKSVFMAE 277
Query: 131 IIGDSGSVTGVDVARHRLAACRTLLQKYA--LG-DRCRLFVADGTTF 174
++G+ GS+T +D++ +L LL++ A LG + + +V D T +
Sbjct: 278 LMGNKGSITSLDISSKKLK----LLEEQAKRLGINIIKTYVNDATIY 320
>gi|389577288|ref|ZP_10167316.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
cellulosolvens 6]
gi|389312773|gb|EIM57706.1| ribosomal RNA small subunit methyltransferase RsmB [Eubacterium
cellulosolvens 6]
Length = 437
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 42 IRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGA 101
+R++ EA L E++ E + K Y L ++ + +GKI DA+S
Sbjct: 186 VRVRKDEEAVLGELK-EAGVSVMKNPLTEHAYDLEGGGDLSRLNCFAEGKILVQDASSQL 244
Query: 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG 161
+V A I AGD VLDLCAAPG K + D+ G G V D+ ++ R +++ L
Sbjct: 245 SVRAAGIRAGDRVLDLCAAPGGKSMLASDLTGPDGLVISRDLTEYKTERIRENVERLGLS 304
Query: 162 D 162
+
Sbjct: 305 N 305
>gi|363891855|ref|ZP_09319030.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium CM2]
gi|361964850|gb|EHL17856.1| ribosomal RNA small subunit methyltransferase B [Eubacteriaceae
bacterium CM2]
Length = 436
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 85/167 (50%), Gaps = 11/167 (6%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIR---LKTGNEADLEEIEAELKCKLEKVVWLS 70
+ + LD K + + S +D+ +IR LKT + DL+ +L K E + +
Sbjct: 159 IAQRLLDNYKNKFTEELLMSMSDTPNIFIRGNRLKTDID-DLKRNLQKLGNKFEIIDEEN 217
Query: 71 GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
SL I+ + Y+ G D AS AV AL+ ++VLD+CAAPG K + +
Sbjct: 218 MIVSLKNFKDISKNDMYRNGFFSVQDYASMKAVLALSPEPFENVLDICAAPGGKSVFMAE 277
Query: 131 IIGDSGSVTGVDVARHRLAACRTLLQKYA--LG-DRCRLFVADGTTF 174
++G+ GS+T +D++ +L LL++ A LG + + +V D T +
Sbjct: 278 LMGNKGSITSLDISSKKLK----LLEEQAKRLGINIIKTYVNDATIY 320
>gi|289551003|ref|YP_003471907.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis HKU09-01]
gi|385784624|ref|YP_005760797.1| hypothetical protein SLUG_16860 [Staphylococcus lugdunensis
N920143]
gi|418414299|ref|ZP_12987514.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis ACS-027-V-Sch2]
gi|289180535|gb|ADC87780.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis HKU09-01]
gi|339894880|emb|CCB54177.1| hypothetical protein SLUG_16860 [Staphylococcus lugdunensis
N920143]
gi|410876906|gb|EKS24803.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis ACS-027-V-Sch2]
Length = 435
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
A+K+G I D +S N+ A D VLD C+APG K C + +I+ +GSV D+
Sbjct: 224 AFKEGLISIQDKSSMFVAQLANLQAHDKVLDACSAPGGKACHMAEILAPTGSVDATDIHA 283
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTT-FSLAPLRLLLD-PGSCNSVLQEK 195
H++ + ++K L + F D T ++ ++L+D P S VL+ K
Sbjct: 284 HKINLIKYNIKKLGLNN-VHAFQHDATQPYTEMYDKILVDAPCSGLGVLRHK 334
>gi|424811862|ref|ZP_18237102.1| tRNA and rRNA cytosine-C5-methylase [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756084|gb|EGQ39667.1| tRNA and rRNA cytosine-C5-methylase [Candidatus Nanosalinarum sp.
J07AB56]
Length = 264
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 63 LEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPG 122
+E+ W + LP K + + +G+ Y + ++ V LN G+ VLDLCAAPG
Sbjct: 23 VEQSDWNPRVFRLPEAEKPGNTYMHWRGEYYVQEESAAVPVDILNPQPGESVLDLCAAPG 82
Query: 123 AKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175
K I G+ G + D +R+RL++ + + Y G DG F+
Sbjct: 83 GKTSQIAARTGNRGELVANDSSRNRLSSLQ--VNSYRTGAAAATTCRDGRDFA 133
>gi|315658498|ref|ZP_07911370.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis M23590]
gi|315496827|gb|EFU85150.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
lugdunensis M23590]
Length = 435
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
A+K+G I D +S N+ A D VLD C+APG K C + +I+ +GSV D+
Sbjct: 224 AFKEGLISIQDKSSMFVAQLANLQAHDKVLDACSAPGGKACHMAEILAPTGSVDATDIHA 283
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTT-FSLAPLRLLLD-PGSCNSVLQEK 195
H++ + ++K L + F D T ++ ++L+D P S VL+ K
Sbjct: 284 HKINLIKYNIKKLGLNN-VHAFQHDATQPYTEMYDKILVDAPCSGLGVLRHK 334
>gi|346306218|ref|ZP_08848380.1| hypothetical protein HMPREF9457_00089 [Dorea formicigenerans
4_6_53AFAA]
gi|345905939|gb|EGX75674.1| hypothetical protein HMPREF9457_00089 [Dorea formicigenerans
4_6_53AFAA]
Length = 461
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 13/204 (6%)
Query: 14 LPEAF----LDFLKENGLDPSVYSAADSTPRYIRLKTG-NEADLEEIEAELKCKLEKVVW 68
LPE F D LKE+ D Y A PRY L+ N+ +EE + ++E + W
Sbjct: 3 LPENFEKKMRDLLKEDFDD---YIACYEEPRYYGLRVNTNKISVEEFKKICPFEIEPIPW 59
Query: 69 L-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
+ +GFY + + Y G Y + ++ + L + GD VLD+CAAPG K
Sbjct: 60 IENGFYYDGEHVTPSKHPYYFAGLYYLQEPSAMTPANRLPVEPGDKVLDVCAAPGGKATE 119
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG---TTFSLAPLRLLLD 184
+ + G + D++ R ++ + +G+ L G + F+ ++L+D
Sbjct: 120 LGAKLQGEGVLAANDISNSRAKGLLKNIEVFGIGNVLVLSEEPGKMESYFTEYFDKILID 179
Query: 185 -PGSCNSVLQEKDDTFREWTSRIP 207
P S + ++ W P
Sbjct: 180 APCSGEGMFRKDKKMVSAWEEHGP 203
>gi|166031892|ref|ZP_02234721.1| hypothetical protein DORFOR_01593 [Dorea formicigenerans ATCC
27755]
gi|166028345|gb|EDR47102.1| NOL1/NOP2/sun family protein [Dorea formicigenerans ATCC 27755]
Length = 461
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 13/204 (6%)
Query: 14 LPEAF----LDFLKENGLDPSVYSAADSTPRYIRLKTG-NEADLEEIEAELKCKLEKVVW 68
LPE F D LKE+ D Y A PRY L+ N+ +EE + ++E + W
Sbjct: 3 LPENFEKKMRDLLKEDFDD---YIACYEEPRYYGLRVNTNKISVEEFKKICPFEIEPIPW 59
Query: 69 L-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
+ +GFY + + Y G Y + ++ + L + GD VLD+CAAPG K
Sbjct: 60 IENGFYYDGEHVTPSKHPYYFAGLYYLQEPSAMTPANRLPVEPGDKVLDVCAAPGGKATE 119
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG---TTFSLAPLRLLLD 184
+ + G + D++ R ++ + +G+ L G + F+ ++L+D
Sbjct: 120 LGAKLQGEGVLAANDISNSRAKGLLKNIEVFGIGNVLVLSEEPGKMESYFTEYFDKILID 179
Query: 185 -PGSCNSVLQEKDDTFREWTSRIP 207
P S + ++ W P
Sbjct: 180 APCSGEGMFRKDKKMVSAWEEHGP 203
>gi|448414552|ref|ZP_21577621.1| nol1/nop2/sun family RNA methylase [Halosarcina pallida JCM 14848]
gi|445682118|gb|ELZ34542.1| nol1/nop2/sun family RNA methylase [Halosarcina pallida JCM 14848]
Length = 312
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 61/137 (44%), Gaps = 16/137 (11%)
Query: 82 ATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGV 141
T+ Y G ++G + S AL+ G+ V D CAAPG+K + D++ D+G + G
Sbjct: 70 GTTWPYFHGWLHGQEEVSALPALALDPEPGEVVWDACAAPGSKTTQLADLMDDTGILIGN 129
Query: 142 DVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL--------------RLLLD-PG 186
D RL+A R ++ + + + D +SL P R L+D P
Sbjct: 130 DNNLGRLSALRHNAERLGVSNLV-VTNQDARNYSLKPFGEDTDDPQTVGAFDRALVDAPC 188
Query: 187 SCNSVLQEKDDTFREWT 203
SC +++ D WT
Sbjct: 189 SCEGTIRKNPDALDRWT 205
>gi|340752563|ref|ZP_08689362.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
2_1_31]
gi|229422362|gb|EEO37409.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
2_1_31]
Length = 434
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K+GKI DA+S A L + D VLD+CAAPG K ++ + + + G +
Sbjct: 211 IINSKEFKEGKIIAQDASSYLAAKNLGVKPNDLVLDICAAPGGKTAVLAEEMKNKGEIIA 270
Query: 141 VDVARHR 147
+D+ +H+
Sbjct: 271 IDIHQHK 277
>gi|387891270|ref|YP_006321567.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens A506]
gi|387160448|gb|AFJ55647.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens A506]
Length = 436
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ QG I D A+ A L+++ G VLD C APG K C IL++ D V VD+
Sbjct: 220 FAQGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSADLIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|146313354|ref|YP_001178428.1| 16S rRNA methyltransferase GidB [Enterobacter sp. 638]
gi|224493252|sp|A4WF97.1|RSMB_ENT38 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|145320230|gb|ABP62377.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacter sp. 638]
Length = 428
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 11/113 (9%)
Query: 69 LSGFY--SLPPDIKIATSM------AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
++GF + P I++A+ ++QG + DA++ ++ L GDH+LDLCAA
Sbjct: 196 MNGFTHDAYPDAIRLASPAPVQALPGFEQGWVTVQDASAQGCMTYLEPQNGDHILDLCAA 255
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173
PG K IL+ I SV VDV RL+ L++ LG + + DG T
Sbjct: 256 PGGKTTHILE-IAPKASVMAVDVDEQRLSRVYDNLKR--LGMKAEVKQGDGRT 305
>gi|419547094|ref|ZP_14085833.1| NOL1/NOP2/sun family protein [Campylobacter coli 2680]
gi|380521212|gb|EIA46954.1| NOL1/NOP2/sun family protein [Campylobacter coli 2680]
Length = 291
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 43 RLKTGN---EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAA 98
RLK N E + +++ E + KL + +L D I +SM A+ + K Y + A
Sbjct: 33 RLKCDNLTLEREFQDLNLEYE-KLNEYCYLFK----ACDKSILSSMQAFNEFKFYIQNYA 87
Query: 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
S L++ AG VLD+CAAPG K + + + + G + + ++ R + L+ Y
Sbjct: 88 SYLCALNLDVKAGQSVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNY 147
Query: 159 ALGDRCRLFVADGTTF-SLAPL---RLLLD 184
G + R+F+ DG +L PL ++LLD
Sbjct: 148 --GVKARVFMKDGKNIGNLCPLKFDKILLD 175
>gi|330500985|ref|YP_004377854.1| sun protein [Pseudomonas mendocina NK-01]
gi|328915271|gb|AEB56102.1| sun protein [Pseudomonas mendocina NK-01]
Length = 437
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+K+G++ D A+ A L ++ G VLD CAAPG K C +L++ V VD+
Sbjct: 220 FKEGRVSVQDEAAQLAADLLELTPGQRVLDACAAPGGKTCHLLEVEPGLSQVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSL----APL-RLLLD-PGSCNSVLQEKDD 197
RLA R L++ L L ADG + P R+LLD P S V++ D
Sbjct: 280 RLARVRENLERLQL--EATLIAADGRDTAAWWDGQPFQRILLDAPCSATGVIRRHPD 334
>gi|419588699|ref|ZP_14124517.1| NOL1/NOP2/sun family protein [Campylobacter coli 317/04]
gi|380569391|gb|EIA91832.1| NOL1/NOP2/sun family protein [Campylobacter coli 317/04]
Length = 291
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 43 RLKTGN---EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAA 98
RLK N E + +++ E + KL + +L D I +SM A+ + K Y + A
Sbjct: 33 RLKCDNLTLEREFQDLNLEYE-KLNEYCYLFK----ACDKSILSSMQAFNEFKFYIQNYA 87
Query: 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
S L++ AG VLD+CAAPG K + + + + G + + ++ R + L+ Y
Sbjct: 88 SYLCALNLDVKAGQSVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNY 147
Query: 159 ALGDRCRLFVADGTTF-SLAPL---RLLLD 184
G + R+F+ DG +L PL ++LLD
Sbjct: 148 --GVKARVFMKDGKNIGNLCPLKFDKILLD 175
>gi|419570160|ref|ZP_14107211.1| NOL1/NOP2/sun family protein [Campylobacter coli 7--1]
gi|380548138|gb|EIA72050.1| NOL1/NOP2/sun family protein [Campylobacter coli 7--1]
Length = 291
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 43 RLKTGN---EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAA 98
RLK N E + +++ E + KL + +L D I +SM A+ + K Y + A
Sbjct: 33 RLKCDNLTLEREFQDLNLEYE-KLNEYCYLFK----ACDKSILSSMQAFNEFKFYIQNYA 87
Query: 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
S L++ AG VLD+CAAPG K + + + + G + + ++ R + L+ Y
Sbjct: 88 SYLCALNLDVKAGQSVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNY 147
Query: 159 ALGDRCRLFVADGTTF-SLAPL---RLLLD 184
G + R+F+ DG +L PL ++LLD
Sbjct: 148 --GVKARVFMKDGKNIGNLCPLKFDKILLD 175
>gi|307102870|gb|EFN51136.1| hypothetical protein CHLNCDRAFT_8770, partial [Chlorella
variabilis]
Length = 425
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/206 (29%), Positives = 87/206 (42%), Gaps = 43/206 (20%)
Query: 15 PEAFLDFLKENGLDPSVYSAADSTPRY-IRLKTGNEADLEEIEAELKCKLEKVVWLSGFY 73
P A L LK N + PRY +RL G ++AE C+ + SG
Sbjct: 139 PAATLALLKHNNM----------RPRYALRLAPG-------VDAEAFCR---QLARSGVQ 178
Query: 74 SLP----PDIKIATSMAYKQGKIYGI-------DAASGAAVSALNISAGDHVLDLCAAPG 122
+ P P + + + G+ D A+G V+AL+ G+ +LD CAAPG
Sbjct: 179 AAPSRYLPREFVTVDRGLQALLVEGLVQRGEAQDEAAGLVVAALDPQPGETLLDACAAPG 238
Query: 123 AKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL------ 176
K + G +T +D++R RLAA R + GD R F AD F+
Sbjct: 239 GKALGAASRMRGRGLITALDLSRSRLAALRHAALRQPHGDMVRTFAADLRRFATLRYRPE 298
Query: 177 APL----RLLLD-PGSCNSVLQEKDD 197
P R+LLD P S VL ++ D
Sbjct: 299 GPPWQYDRVLLDAPCSGTGVLAKRAD 324
>gi|421140893|ref|ZP_15600889.1| potassium transporter peripheral membrane component [Pseudomonas
fluorescens BBc6R8]
gi|404508095|gb|EKA22069.1| potassium transporter peripheral membrane component [Pseudomonas
fluorescens BBc6R8]
Length = 436
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C I+++ D V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHIMEVQADLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|419547863|ref|ZP_14086502.1| NOL1/NOP2/sun family protein [Campylobacter coli 2685]
gi|380528236|gb|EIA53554.1| NOL1/NOP2/sun family protein [Campylobacter coli 2685]
Length = 291
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 43 RLKTGN---EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAA 98
RLK N E + +++ E + KL + +L D I +SM A+ + K Y + A
Sbjct: 33 RLKCDNLTLEREFQDLNLEYE-KLNEYCYLFK----ACDKSILSSMQAFNEFKFYIQNYA 87
Query: 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
S L++ AG VLD+CAAPG K + + + + G + + ++ R + L+ Y
Sbjct: 88 SYLCALNLDVKAGQSVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNY 147
Query: 159 ALGDRCRLFVADGTTF-SLAPL---RLLLD 184
G + R+F+ DG +L PL ++LLD
Sbjct: 148 --GVKARVFMKDGKNIGNLCPLKFDKILLD 175
>gi|419568690|ref|ZP_14105822.1| NOL1/NOP2/sun family protein [Campylobacter coli 1417]
gi|419574937|ref|ZP_14111637.1| NOL1/NOP2/sun family protein [Campylobacter coli 1909]
gi|419580666|ref|ZP_14116986.1| NOL1/NOP2/sun family protein [Campylobacter coli 1957]
gi|380545118|gb|EIA69112.1| NOL1/NOP2/sun family protein [Campylobacter coli 1417]
gi|380554602|gb|EIA78064.1| NOL1/NOP2/sun family protein [Campylobacter coli 1909]
gi|380560477|gb|EIA83554.1| NOL1/NOP2/sun family protein [Campylobacter coli 1957]
Length = 291
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 43 RLKTGN---EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAA 98
RLK N E + +++ E + KL + +L D I +SM A+ + K Y + A
Sbjct: 33 RLKCDNLTLEREFQDLNLEYE-KLNEYCYLFK----ACDKSILSSMQAFNEFKFYIQNYA 87
Query: 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
S L++ AG VLD+CAAPG K + + + + G + + ++ R + L+ Y
Sbjct: 88 SYLCALNLDVKAGQSVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNY 147
Query: 159 ALGDRCRLFVADGTTF-SLAPL---RLLLD 184
G + R+F+ DG +L PL ++LLD
Sbjct: 148 --GVKARVFMKDGKNIGNLCPLKFDKILLD 175
>gi|240103511|ref|YP_002959820.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
gammatolerans EJ3]
gi|239911065|gb|ACS33956.1| SAM-dependent tRNA/rRNA cytosine-C5 methylase [Thermococcus
gammatolerans EJ3]
Length = 451
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
YK+GK D AS LN G+ VLDL AAPG+K ++ + G + VD +
Sbjct: 238 YKEGKFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAASLMENKGEIVAVDYSYD 297
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSLAPL--RLLLDPGSCNSVLQEKDDTFREWTS 204
RL + ++ + + +L ADG +F R++LD C+S T+R++
Sbjct: 298 RLMRMKEKMKILGIKN-VKLVHADGQSFRDKAKFDRIILD-APCSS-----SGTYRQFPE 350
Query: 205 RIPWKERKRAVKARENAASKAIVRSEHPEL 234
+ W+ +R +K R + + ++R+ + L
Sbjct: 351 -VKWRFDERKIK-RIISVQRNMLRNAYENL 378
>gi|198417836|ref|XP_002124670.1| PREDICTED: similar to NOL1/NOP2/Sun domain family, member 4
(predicted) [Ciona intestinalis]
Length = 422
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
+ +DA S V +L+ GD +LD+C+APG KL +++ IGDSG + D+ R+ +
Sbjct: 189 FLLDAGSLLPVLSLDPQPGDSILDMCSAPGGKLNVMMQAIGDSGRIVANDINTKRVTRVK 248
Query: 153 TLLQKY 158
+ ++Y
Sbjct: 249 NVYKEY 254
>gi|402467155|gb|EJW02504.1| hypothetical protein EDEG_03090 [Edhazardia aedis USNM 41457]
Length = 385
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 9/157 (5%)
Query: 78 DIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGS 137
++KI + +YK G+I + +S LN V+D CAAPG K + I+G++G
Sbjct: 163 ELKIQFTESYKNGEIIIQNYSSCLPAHVLNPPPKSFVIDACAAPGNKTSQLASIMGNTGK 222
Query: 138 VTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL--RLLLDP---GSCNSVL 192
+ + R T+L K+ + + F D T + +L+DP GS
Sbjct: 223 IFAYEKNHDRFQTLNTMLAKHGVTN-TETFCKDFTEAHIDNTVEYILIDPSCSGSGIHNF 281
Query: 193 QEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRS 229
+KDD E ++ + ++K + A + +K IV S
Sbjct: 282 TKKDD---ERLKKLSFFQKKILLHAMKFKNAKKIVYS 315
>gi|419577581|ref|ZP_14114132.1| NOL1/NOP2/sun family protein [Campylobacter coli 59-2]
gi|419584968|ref|ZP_14121031.1| NOL1/NOP2/sun family protein [Campylobacter coli 202/04]
gi|419591146|ref|ZP_14126502.1| NOL1/NOP2/sun family protein [Campylobacter coli 37/05]
gi|419596874|ref|ZP_14131868.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 23341]
gi|419598388|ref|ZP_14133270.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 23342]
gi|419610188|ref|ZP_14144260.1| NOL1/NOP2/sun family protein [Campylobacter coli H8]
gi|419612048|ref|ZP_14145934.1| NOL1/NOP2/sun family protein [Campylobacter coli H9]
gi|380556965|gb|EIA80193.1| NOL1/NOP2/sun family protein [Campylobacter coli 59-2]
gi|380562876|gb|EIA85723.1| NOL1/NOP2/sun family protein [Campylobacter coli 202/04]
gi|380568928|gb|EIA91384.1| NOL1/NOP2/sun family protein [Campylobacter coli 37/05]
gi|380575076|gb|EIA97163.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 23341]
gi|380577213|gb|EIA99238.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 23342]
gi|380590749|gb|EIB11753.1| NOL1/NOP2/sun family protein [Campylobacter coli H8]
gi|380591353|gb|EIB12338.1| NOL1/NOP2/sun family protein [Campylobacter coli H9]
Length = 291
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 43 RLKTGN---EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAA 98
RLK N E + +++ E + KL + +L D I +SM A+ + K Y + A
Sbjct: 33 RLKCDNLTLEREFQDLNLEYE-KLNEYCYLFK----ACDKSILSSMQAFNEFKFYIQNYA 87
Query: 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
S L++ AG VLD+CAAPG K + + + + G + + ++ R + L+ Y
Sbjct: 88 SYLCALNLDVKAGQSVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNY 147
Query: 159 ALGDRCRLFVADGTTF-SLAPL---RLLLD 184
G + R+F+ DG +L PL ++LLD
Sbjct: 148 --GVKARVFMKDGKNIGNLCPLKFDKILLD 175
>gi|419557684|ref|ZP_14095587.1| NOL1/NOP2/sun family protein [Campylobacter coli 80352]
gi|419572309|ref|ZP_14109232.1| NOL1/NOP2/sun family protein [Campylobacter coli 132-6]
gi|419605724|ref|ZP_14140114.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 9860]
gi|380541486|gb|EIA65747.1| NOL1/NOP2/sun family protein [Campylobacter coli 80352]
gi|380551352|gb|EIA74953.1| NOL1/NOP2/sun family protein [Campylobacter coli 132-6]
gi|380587825|gb|EIB08993.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 9860]
Length = 291
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 43 RLKTGN---EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAA 98
RLK N E + +++ E + KL + +L D I +SM A+ + K Y + A
Sbjct: 33 RLKCDNLTLEREFQDLNLEYE-KLNEYCYLFK----ACDKSILSSMQAFNEFKFYIQNYA 87
Query: 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
S L++ AG VLD+CAAPG K + + + + G + + ++ R + L+ Y
Sbjct: 88 SYLCALNLDVKAGQSVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNY 147
Query: 159 ALGDRCRLFVADGTTF-SLAPL---RLLLD 184
G + R+F+ DG +L PL ++LLD
Sbjct: 148 --GVKARVFMKDGKNIGNLCPLKFDKILLD 175
>gi|419536950|ref|ZP_14076422.1| NOL1/NOP2/sun family protein [Campylobacter coli 111-3]
gi|419540436|ref|ZP_14079672.1| NOL1/NOP2/sun family protein [Campylobacter coli Z163]
gi|419564247|ref|ZP_14101630.1| NOL1/NOP2/sun family protein [Campylobacter coli 1098]
gi|419580040|ref|ZP_14116423.1| NOL1/NOP2/sun family protein [Campylobacter coli 1948]
gi|419582445|ref|ZP_14118643.1| NOL1/NOP2/sun family protein [Campylobacter coli 1961]
gi|419602647|ref|ZP_14137224.1| NOL1/NOP2/sun family protein [Campylobacter coli 151-9]
gi|419614160|ref|ZP_14147947.1| NOL1/NOP2/sun family protein [Campylobacter coli H56]
gi|419616383|ref|ZP_14150031.1| NOL1/NOP2/sun family protein [Campylobacter coli Z156]
gi|380516782|gb|EIA42908.1| NOL1/NOP2/sun family protein [Campylobacter coli Z163]
gi|380517020|gb|EIA43144.1| NOL1/NOP2/sun family protein [Campylobacter coli 111-3]
gi|380542854|gb|EIA67080.1| NOL1/NOP2/sun family protein [Campylobacter coli 1098]
gi|380555637|gb|EIA78939.1| NOL1/NOP2/sun family protein [Campylobacter coli 1948]
gi|380564881|gb|EIA87671.1| NOL1/NOP2/sun family protein [Campylobacter coli 1961]
gi|380580941|gb|EIB02676.1| NOL1/NOP2/sun family protein [Campylobacter coli 151-9]
gi|380593035|gb|EIB13881.1| NOL1/NOP2/sun family protein [Campylobacter coli H56]
gi|380595763|gb|EIB16487.1| NOL1/NOP2/sun family protein [Campylobacter coli Z156]
Length = 291
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 15/150 (10%)
Query: 43 RLKTGN---EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAA 98
RLK N E + +++ E + KL + +L D I +SM A+ + K Y + A
Sbjct: 33 RLKCDNLTLEREFQDLNLEYE-KLNEYCYLFK----ACDKSILSSMQAFNEFKFYIQNYA 87
Query: 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
S L++ AG VLD+CAAPG K + + + + G + + ++ R + L+ Y
Sbjct: 88 SYLCALNLDVKAGQSVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNY 147
Query: 159 ALGDRCRLFVADGTTF-SLAPL---RLLLD 184
G + R+F+ DG +L PL ++LLD
Sbjct: 148 --GVKARVFMKDGKNIGNLCPLKFDKILLD 175
>gi|242398901|ref|YP_002994325.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-
terminal NusB regulator domain [Thermococcus sibiricus
MM 739]
gi|242265294|gb|ACS89976.1| TRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to N-
terminal NusB regulator domain [Thermococcus sibiricus
MM 739]
Length = 450
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 9/150 (6%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
YK+G D AS L+ G+ VLDL AAPG+K + ++ ++G + VD +
Sbjct: 237 GYKEGYFVIQDLASAYVAHVLSPEKGERVLDLAAAPGSKTFHVAQLMENTGEIIAVDYSL 296
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-LAPLRLLLDPGSCNSVLQEKDDTFREWTS 204
RL T ++ + + +L ADG F + ++ C+S T+R++
Sbjct: 297 ERLRKMETKMKILGVKN-VKLVHADGMKFKDMRKFDKIILDAPCSS-----SGTYRQFPE 350
Query: 205 RIPWKERKRAVKARENAASKAIVRSEHPEL 234
+ W+ K +K + KA++R+ + L
Sbjct: 351 -VKWRFNKEKIK-KVIQVQKAMIRNAYKNL 378
>gi|395650512|ref|ZP_10438362.1| 16S rRNA methyltransferase B [Pseudomonas extremaustralis 14-3
substr. 14-3b]
Length = 436
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL++ D V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVQKDLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|421145689|ref|ZP_15605538.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
subsp. fusiforme ATCC 51190]
gi|395487911|gb|EJG08817.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
subsp. fusiforme ATCC 51190]
Length = 435
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K GKI DA+S A L + VLD+CAAPG K ++ + + + G +
Sbjct: 212 IINSEEFKTGKIIAQDASSYLAAKNLGVMPNKLVLDICAAPGGKTAVLAENMKNMGEIIA 271
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+D+ +H++ T ++K + D + V D
Sbjct: 272 IDIHQHKIKLIDTNMKKLGI-DIVKAIVMDA 301
>gi|308068497|ref|YP_003870102.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus polymyxa E681]
gi|305857776|gb|ADM69564.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus polymyxa E681]
Length = 558
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 95/205 (46%), Gaps = 10/205 (4%)
Query: 9 ISKLPLPEAFLDFLKENGLDP--SVYSAADSTPRY-IRLKTGNEADLEEIEAELKCKLEK 65
I + LP AF+ +++ D + +A D TP IR+ T + +E+ + +L
Sbjct: 4 IMGVQLPTAFVKRMEQLLGDEFEAFMTAYDHTPHAGIRVNT-LKIPMEDFKERSPFELRP 62
Query: 66 VVW-LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAK 124
+ W +GFY +P K Y G Y + ++ + V LN++ + VLDLCAAPG K
Sbjct: 63 IPWCATGFY-IPHGTKPGLHPYYHAGLYYVQEPSAMSPVELLNVAQDEAVLDLCAAPGGK 121
Query: 125 LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL---RL 181
I + SG + D++ R A ++ Y + + L + + P ++
Sbjct: 122 STQIAAKLQGSGVLVTNDISADRTKALAKNVELYGVRNAVVLNESPDRIAAAFPHFFDKI 181
Query: 182 LLD-PGSCNSVLQEKDDTFREWTSR 205
L+D P S + ++ +D ++W +
Sbjct: 182 LIDAPCSGEGMFRKDEDMAKQWETH 206
>gi|395800086|ref|ZP_10479365.1| 16S rRNA methyltransferase B [Pseudomonas sp. Ag1]
gi|395335928|gb|EJF67790.1| 16S rRNA methyltransferase B [Pseudomonas sp. Ag1]
Length = 436
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C I+++ D V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHIMEVQADLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|393718392|ref|ZP_10338319.1| hypothetical protein SechA1_01521 [Sphingomonas echinoides ATCC
14820]
Length = 390
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Query: 15 PEAFLDFLKENGLDPSVYSA-ADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFY 73
P LD L+++GLD + + A D P R+ N A E IE E E + L+
Sbjct: 109 PNWILDRLRQSGLDDAEFPALIDRAPLDARI---NRAIHEAIEIE---GAEPIAGLADGL 162
Query: 74 SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG 133
LP ++ AY G I DA S A AG ++DLCA G K + +G
Sbjct: 163 RLPSGTQVEQLPAYNHGAIEVQDAGSQFVTLAARAQAGQRIVDLCAGAGGKTLALAAAMG 222
Query: 134 DSGSVTGVDVARHRLA 149
G V D R RL+
Sbjct: 223 GQGVVLATDTDRARLS 238
>gi|419595024|ref|ZP_14130140.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 23336]
gi|380574635|gb|EIA96733.1| NOL1/NOP2/sun family protein [Campylobacter coli LMG 23336]
Length = 291
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 7/112 (6%)
Query: 78 DIKIATSM-AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSG 136
D I +SM A+ + K Y + AS L++ AG VLD+CAAPG K + + + + G
Sbjct: 66 DKSILSSMQAFNEFKFYIQNYASYLCALNLDVKAGQSVLDMCAAPGGKSINLANFMQNEG 125
Query: 137 SVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF-SLAPL---RLLLD 184
+ + ++ R + L+ Y G + R+F+ DG +L PL ++LLD
Sbjct: 126 YLACNEASKDRFFTLQKNLKNY--GVKARVFMKDGKNIGNLCPLKFDKILLD 175
>gi|422317025|ref|ZP_16398394.1| hypothetical protein FPOG_01724, partial [Fusobacterium
periodonticum D10]
gi|404590296|gb|EKA92743.1| hypothetical protein FPOG_01724, partial [Fusobacterium
periodonticum D10]
Length = 281
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K+GKI DA+S A L + D VLD+CAAPG K ++ + + + G +
Sbjct: 211 IINSKEFKEGKIIAQDASSYLAAKNLGVKPNDLVLDICAAPGGKTAVLAEEMKNKGEIIA 270
Query: 141 VDVARHR 147
+D+ +H+
Sbjct: 271 IDIHQHK 277
>gi|242373505|ref|ZP_04819079.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
M23864:W1]
gi|242348868|gb|EES40470.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus epidermidis
M23864:W1]
Length = 435
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S A+K G + D +S +N+ D VLD C+APG K C + +I+ G V
Sbjct: 219 IINSRAFKDGYVSVQDKSSMMVAHIMNLGRNDVVLDACSAPGGKACHMAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTT-FSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ ++K L D F D T ++ ++L+D P S VL+ K
Sbjct: 279 TDIHTHKIDLINFNIKKLKL-DNISAFQHDATEPYTRTYDKILVDAPCSGLGVLRHK 334
>gi|94987286|ref|YP_595219.1| tRNA and rRNA cytosine-C5-methylases [Lawsonia intracellularis
PHE/MN1-00]
gi|442556128|ref|YP_007365953.1| NOL1/NOP2/sun family protein [Lawsonia intracellularis N343]
gi|94731535|emb|CAJ54898.1| tRNA and rRNA cytosine-C5-methylases [Lawsonia intracellularis
PHE/MN1-00]
gi|441493575|gb|AGC50269.1| NOL1/NOP2/sun family protein [Lawsonia intracellularis N343]
Length = 423
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S+A G IY D +S V AL + GD +LD+CA+PG+K ++ ++G++G + G
Sbjct: 53 LGKSLAAFFGLIYIQDRSSMLPVLALQANVGDIILDMCASPGSKTTLLSQLVGNTGLIVG 112
Query: 141 VDVARHRLAACRTLLQK 157
D + RL R L +
Sbjct: 113 NDPTKSRLLTLRNNLGR 129
>gi|312958118|ref|ZP_07772641.1| rRNA SAM-dependent methyltransferase [Pseudomonas fluorescens WH6]
gi|311287549|gb|EFQ66107.1| rRNA SAM-dependent methyltransferase [Pseudomonas fluorescens WH6]
Length = 436
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL++ D V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|229587594|ref|YP_002869713.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens SBW25]
gi|229359460|emb|CAY46301.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens SBW25]
Length = 436
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL++ D V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|167037728|ref|YP_001665306.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|320116143|ref|YP_004186302.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
gi|166856562|gb|ABY94970.1| sun protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
gi|319929234|gb|ADV79919.1| sun protein [Thermoanaerobacter brockii subsp. finnii Ako-1]
Length = 444
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
YK+G IY D AS LN G+ V+D+CAAPG K I ++ ++G V D+ H
Sbjct: 225 YKEGFIYIQDEASMLVSKILNPKEGETVIDVCAAPGGKTTHIAQLMKNNGKVVAFDLHPH 284
Query: 147 RLAACR 152
RL +
Sbjct: 285 RLELIK 290
>gi|374323258|ref|YP_005076387.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus terrae HPL-003]
gi|357202267|gb|AET60164.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus terrae HPL-003]
Length = 557
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 94/199 (47%), Gaps = 14/199 (7%)
Query: 14 LPEAFLDFLKENGLDP--SVYSAADSTPRY-IRLKTGNEADLEEIEAELKCKLEKVVWL- 69
LP AF+ +++ D + +A D TP IR+ T + +E +A +L + W
Sbjct: 5 LPTAFVKRMEQLLGDEFEAFMAAYDHTPHAGIRVNT-LKISVEAFKAISPFELRPIPWCD 63
Query: 70 SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
+GFY +P K Y G Y + ++ + V LN++ G+ VLDLCAAPG K I
Sbjct: 64 TGFY-VPYGTKPGLHPYYHAGLYYVQEPSAMSPVELLNVAQGEAVLDLCAAPGGKSTQIA 122
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF-----VADGTTFSLAPLRLLLD 184
+ SG + D++ R A ++ Y + + L +AD F ++L+D
Sbjct: 123 AKLQGSGLLVTNDISADRTKALAKNVELYGVRNAVVLNESPDRIAD--AFPHFFDKILID 180
Query: 185 -PGSCNSVLQEKDDTFREW 202
P S + ++ +D ++W
Sbjct: 181 APCSGEGMFRKDEDMAKQW 199
>gi|300361951|ref|ZP_07058128.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
gasseri JV-V03]
gi|300354570|gb|EFJ70441.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
gasseri JV-V03]
Length = 438
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + +K GKI DAA+ AV A N + + VLD C+APG K I + + + GSV
Sbjct: 220 VAQTSLFKDGKITIQDAAASLAVDAFNFTGNEQVLDACSAPGGKTVQIAEKLTN-GSVIA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCR 165
+D+ ++L + ++ + D+ +
Sbjct: 279 LDIHENKLRLVKNAAKRLHVSDKVK 303
>gi|15920908|ref|NP_376577.1| Sun family protein [Sulfolobus tokodaii str. 7]
gi|15621692|dbj|BAB65686.1| putative RNA methyltransferase [Sulfolobus tokodaii str. 7]
Length = 370
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 79 IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSV 138
+I+ + +++G+I D AS V+ L+ + +L++ +APG K +I + + V
Sbjct: 154 FRISKTEEFQKGEIVIQDKASVYVVTVLDPKPYERILEVGSAPGMKTSLIQQLTNNKAYV 213
Query: 139 TGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL-RLLLDPGSCNS 190
+D++ R+ R L++K + + L VADG + + ++L+D NS
Sbjct: 214 IALDISEKRIQVQRELMEKMGV-ENYELIVADGENLPIKEVDKILIDAPCSNS 265
>gi|325194265|emb|CCA28236.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 173
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 265 YDKVLVDAECTHDGSIKHIQKFENW-GWTTLQRRVLDPERTDSVTNLQ 311
YDKVLVDAECTHDGSI+H+QK + WT + L+ + + + +LQ
Sbjct: 39 YDKVLVDAECTHDGSIRHLQKLKTLEAWTNYMEKYLNATQLERIRDLQ 86
>gi|447919229|ref|YP_007399797.1| 16S rRNA methyltransferase B [Pseudomonas poae RE*1-1-14]
gi|445203092|gb|AGE28301.1| 16S rRNA methyltransferase B [Pseudomonas poae RE*1-1-14]
Length = 436
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL++ D V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|225568054|ref|ZP_03777079.1| hypothetical protein CLOHYLEM_04127 [Clostridium hylemonae DSM
15053]
gi|225163150|gb|EEG75769.1| hypothetical protein CLOHYLEM_04127 [Clostridium hylemonae DSM
15053]
Length = 460
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 85/202 (42%), Gaps = 9/202 (4%)
Query: 14 LPEAFLDFLKE--NGLDPSVYSAADSTPRYIRLKTG-NEADLEEIEAELKCKLEKVVWL- 69
LP AF D +KE G P Y A PRY L+ N+ EE + + V W+
Sbjct: 3 LPCAFEDKMKELLAGEYPD-YIACYEEPRYYGLRVNTNKITTEEFKKICPFDITPVPWIP 61
Query: 70 SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
+GFY + + Y G Y + ++ S L ++ G+ VLDLCAAPG K +
Sbjct: 62 NGFYYDGETVSPSKHPYYFAGLYYLQEPSAMTPASRLPVNPGEKVLDLCAAPGGKATELG 121
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL---RLLLD-P 185
+ +G + D++ R ++ + +G+ L G P ++L+D P
Sbjct: 122 AELCGTGVLAANDISSSRAKGLLKNVEVFGIGNMLILSEEPGRLSGYFPGYFDKILIDAP 181
Query: 186 GSCNSVLQEKDDTFREWTSRIP 207
S + ++ R W P
Sbjct: 182 CSGEGMFRKDRKMVRAWEEHGP 203
>gi|440738505|ref|ZP_20918035.1| 16S rRNA methyltransferase B [Pseudomonas fluorescens BRIP34879]
gi|440380961|gb|ELQ17509.1| 16S rRNA methyltransferase B [Pseudomonas fluorescens BRIP34879]
Length = 436
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL++ D V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|383625298|ref|ZP_09949704.1| RNA methylase, NOL1/NOP2/sun family protein [Halobiforma lacisalsi
AJ5]
gi|448700278|ref|ZP_21699386.1| RNA methylase, NOL1/NOP2/sun family protein [Halobiforma lacisalsi
AJ5]
gi|445779818|gb|EMA30733.1| RNA methylase, NOL1/NOP2/sun family protein [Halobiforma lacisalsi
AJ5]
Length = 302
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 10/171 (5%)
Query: 40 RYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAAS 99
R +KT E +E E + ++ W L D AT ++ G +G + S
Sbjct: 30 RVNTIKTSVERATATLEEE-GVEFDQADWNPRVLRLETDSPGATWASF-HGFTHGQEEVS 87
Query: 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159
L+ G+ V D CAAPG K I ++ D G+V D R++A R ++
Sbjct: 88 AVPPVVLDPQPGERVWDACAAPGGKATQIAALMDDEGTVVANDSNLGRISALRFNAERLG 147
Query: 160 LGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
+ + AD +SLAP R L+D P SC +++ D W+
Sbjct: 148 ATNLA-VTNADARNYSLAPFSFDEFDRALVDAPCSCEGTIRKNPDALENWS 197
>gi|340722018|ref|XP_003399409.1| PREDICTED: putative methyltransferase NSUN5-like [Bombus
terrestris]
Length = 577
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 37/79 (46%)
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
+S PPD Y+ G+I D AS LN G VLDLCAAPG K +
Sbjct: 190 ISELLIFPPDTTFHDHPGYQNGEILLQDKASCLPSQLLNPEPGSTVLDLCAAPGMKSSHL 249
Query: 129 LDIIGDSGSVTGVDVARHR 147
I+G+ G + V++ R
Sbjct: 250 AAIMGNKGKIYAVEIDERR 268
>gi|313126366|ref|YP_004036636.1| nol1/nop2/sun family RNA methylase [Halogeometricum borinquense DSM
11551]
gi|448286208|ref|ZP_21477443.1| nol1/nop2/sun family RNA methylase [Halogeometricum borinquense DSM
11551]
gi|312292731|gb|ADQ67191.1| NOL1/NOP2/sun family putative RNA methylase [Halogeometricum
borinquense DSM 11551]
gi|445575259|gb|ELY29738.1| nol1/nop2/sun family RNA methylase [Halogeometricum borinquense DSM
11551]
Length = 312
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 16/137 (11%)
Query: 82 ATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGV 141
T+ Y G ++G + S AL+ G+ V D CAAPG+K + D++ D+G + G
Sbjct: 70 GTTWPYFHGWLHGQEEVSALPALALDPEPGEIVWDACAAPGSKTTQLADLMDDTGVLIGN 129
Query: 142 DVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL--------------RLLLD-PG 186
D RL+A R ++ + + + D +SL P + L+D P
Sbjct: 130 DNNLGRLSALRHNAERLGVSNLV-VTNQDARNYSLKPFGEDTDDSAAIDAFDKALVDAPC 188
Query: 187 SCNSVLQEKDDTFREWT 203
SC +++ D WT
Sbjct: 189 SCEGTIRKNPDALDRWT 205
>gi|402701203|ref|ZP_10849182.1| 16S rRNA methyltransferase B [Pseudomonas fragi A22]
Length = 436
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 57/117 (48%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL++ + V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVEPELAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L++ LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLER--LGLSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|429728017|ref|ZP_19262762.1| ribosomal RNA small subunit methyltransferase B, partial
[Peptostreptococcus anaerobius VPI 4330]
gi|429150689|gb|EKX93586.1| ribosomal RNA small subunit methyltransferase B, partial
[Peptostreptococcus anaerobius VPI 4330]
Length = 464
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%)
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVT 139
+I +K G I D +S ALN VLDLCAAPG K C I +++ DSGSV
Sbjct: 244 QIENKDLFKSGYISVQDISSMMVARALNPKKNSKVLDLCAAPGGKSCHIGEMMKDSGSVL 303
Query: 140 GVDVARHRLAACRTLLQKYAL 160
DV H++ + + L
Sbjct: 304 ACDVFDHKIKLIKAYSNRLGL 324
>gi|443474078|ref|ZP_21064099.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas
pseudoalcaligenes KF707]
gi|442905013|gb|ELS29928.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas
pseudoalcaligenes KF707]
Length = 437
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ T + +G++ D A+ A L ++ G VLD C APG K C +L+ V
Sbjct: 214 VKTLPGFAEGRVSVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEAEPGLAEVVA 273
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQE 194
VD+ RL R LQ+ LG RL ADG + + P R+LLD P S V++
Sbjct: 274 VDLEESRLVRVRENLQR--LGLDARLIAADGRDTASWWDGKPFQRILLDAPCSATGVIRR 331
Query: 195 KDD 197
D
Sbjct: 332 HPD 334
>gi|419622687|ref|ZP_14155915.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23216]
gi|380599049|gb|EIB19430.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23216]
Length = 292
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 9/140 (6%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNI 108
+EE+E E + K ++ + L D I +SM A+ +G Y + +S L +
Sbjct: 38 IEELEKEFLKQNLKFKKINAYCYLFDAKDKAILSSMKAFNEGYFYIQNYSSYLCALNLEV 97
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 98 KAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVFM 155
Query: 169 ADGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 156 KDGKNIGNLCPLKFDKILLD 175
>gi|327401876|ref|YP_004342715.1| NOL1/NOP2/sun family RNA methylase [Archaeoglobus veneficus SNP6]
gi|327317384|gb|AEA48000.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus veneficus SNP6]
Length = 308
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 16/142 (11%)
Query: 42 IRLKT--GNEADLEEIEAELKCKLEKVVWL-SGFY-SLPPDIKIATSMAYKQGKIYGIDA 97
IR+ T G+ D+ + +E K K+E V W GF+ + D I TS+ ++ G I+ +A
Sbjct: 36 IRVNTLKGSLEDIVSLLSE-KYKIEPVPWCREGFFIDIDEDSSIGTSIEHQLGLIFSQEA 94
Query: 98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157
+S L++ G VLD+ AAPGAK I + + G + DV RL + LQ
Sbjct: 95 SSMIPPVVLDVKPGMLVLDMAAAPGAKTTQIAQYMQNEGCIIANDVKVGRLNILISNLQ- 153
Query: 158 YALGDRCRLFVA-----DGTTF 174
RC + +A DG +F
Sbjct: 154 -----RCGVLIARVTMMDGRSF 170
>gi|296327374|ref|ZP_06869923.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|296155489|gb|EFG96257.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 435
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K GKI DA+S A L+ + VLD+CAAPG K ++ + + + G +
Sbjct: 212 IINSEEFKTGKIIAQDASSYLAAKNLDAMPNELVLDICAAPGGKTAVLAENMKNMGEIIA 271
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+D+ +H++ T ++K + D + V D
Sbjct: 272 IDIHQHKIKLIDTNMKKLRI-DIVKAIVMDA 301
>gi|149923973|ref|ZP_01912358.1| Fmu (Sun) domain protein [Plesiocystis pacifica SIR-1]
gi|149815151|gb|EDM74702.1| Fmu (Sun) domain protein [Plesiocystis pacifica SIR-1]
Length = 467
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%)
Query: 50 ADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNIS 109
D +EA L ++ + W +G Y + + AY G ++ + S L +
Sbjct: 39 GDAATLEAALGDRIRPLSWGAGGYRVAEGVSAGHHWAYLAGLLHIQEEVSMLPAQLLGVQ 98
Query: 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
G+ VLDLCAAPG K + + ++G V D + R+ ACR +L++ L
Sbjct: 99 PGERVLDLCAAPGNKSAQLAAALANAGRVIANDRSMGRMRACRQVLERLGL 149
>gi|304415449|ref|ZP_07396098.1| 16S rRNA m5C967 methyltransferase (SAM-dependent) [Candidatus
Regiella insecticola LSR1]
gi|304282713|gb|EFL91227.1| 16S rRNA m5C967 methyltransferase (SAM-dependent) [Candidatus
Regiella insecticola LSR1]
Length = 390
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+ QG + DA++ + L+ G+++LDLCAAPG K IL+ + V VD+ +
Sbjct: 222 GFSQGWVTVQDASAQGCIDLLHPKNGEYILDLCAAPGGKTTYILE-VAPKAEVLAVDIDK 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFSL-----APLRLLLD-PGSCNSVLQEKDDTF 199
RL + LQ+ L + R+ + DG T + R+LLD P S V++ D
Sbjct: 281 QRLRCVKENLQRLQL--QARIKIGDGRTPDIWCGEQLFDRILLDAPCSATGVIRRHPDI- 337
Query: 200 REWTSR 205
+W R
Sbjct: 338 -KWLRR 342
>gi|388466964|ref|ZP_10141174.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
synxantha BG33R]
gi|388010544|gb|EIK71731.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
synxantha BG33R]
Length = 436
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL++ D V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSADLIAADGRNTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|299535921|ref|ZP_07049241.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZC1]
gi|424738860|ref|ZP_18167289.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZB2]
gi|298728673|gb|EFI69228.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZC1]
gi|422947344|gb|EKU41741.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
fusiformis ZB2]
Length = 453
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 39/67 (58%)
Query: 82 ATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGV 141
A + A+K+G I D +S + LN S G VLD+CAAPG K I +I+ + GS+
Sbjct: 228 ARTKAFKEGMITIQDESSMIPANVLNPSPGMRVLDMCAAPGGKTTHIAEIMQNEGSILAT 287
Query: 142 DVARHRL 148
D+ H+L
Sbjct: 288 DLHPHKL 294
>gi|153853073|ref|ZP_01994482.1| hypothetical protein DORLON_00467 [Dorea longicatena DSM 13814]
gi|149753859|gb|EDM63790.1| NOL1/NOP2/sun family protein [Dorea longicatena DSM 13814]
Length = 458
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 8/183 (4%)
Query: 32 YSAADSTPRY--IRLKTGNEADLEEIEAELKCKLEKVVWL-SGFYSLPPDIKIATSMAYK 88
Y A PRY +R+ TG + +EE E ++ K+ W+ +GFY + A Y
Sbjct: 22 YIACYEEPRYYGMRVNTG-KISVEEFEKICPFEIRKIPWIENGFYYDGDKVSPAKHPYYF 80
Query: 89 QGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRL 148
G Y + ++ + L + GD VLD+CAAPG K + + G + D++ R
Sbjct: 81 AGLYYLQEPSAMTPANRLPVEPGDKVLDVCAAPGGKATELGAKLQGEGVLIANDISSSRA 140
Query: 149 AACRTLLQKYALGDRCRLFVADG---TTFSLAPLRLLLD-PGSCNSVLQEKDDTFREWTS 204
++ + +G+ L G F+ ++L+D P S + ++ + W
Sbjct: 141 KGLLKNIEVFGIGNVLVLSEEPGRLENYFTEYFDKILIDAPCSGEGMFRKDKKMVKAWEE 200
Query: 205 RIP 207
P
Sbjct: 201 HGP 203
>gi|19703658|ref|NP_603220.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
gi|19713776|gb|AAL94519.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586]
Length = 435
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 20/169 (11%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPR--YIRLKTGN--------EADLEEIEAELKCKL 63
+P+ F D L++ D ++ A S + Y+ ++ E L+E + ++ K+
Sbjct: 142 IPKWFYDILEKQYGDNNLKQAITSLKKIPYLSVRVNKLKYSEEEFEEFLKERDIQIIKKI 201
Query: 64 EKVVWL-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPG 122
+ V ++ SG I S +K GKI DA+S A L+ + VLD+CAAPG
Sbjct: 202 DTVYYVNSGL--------IINSEEFKTGKIIAQDASSYLAAKNLDAMPNELVLDICAAPG 253
Query: 123 AKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171
K ++ + + + G + +D+ +H++ T ++K + D + V D
Sbjct: 254 GKTAVLAENMKNMGEIIAIDIHQHKIKLIDTNMKKLRI-DIVKAIVMDA 301
>gi|308173537|ref|YP_003920242.1| RNA-binding protein [Bacillus amyloliquefaciens DSM 7]
gi|384159442|ref|YP_005541515.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens TA208]
gi|384164123|ref|YP_005545502.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens LL3]
gi|384168489|ref|YP_005549867.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens XH7]
gi|307606401|emb|CBI42772.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens DSM 7]
gi|328553530|gb|AEB24022.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens TA208]
gi|328911678|gb|AEB63274.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens LL3]
gi|341827768|gb|AEK89019.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens XH7]
Length = 447
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 6/94 (6%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA++ ++ G++ D +S AL+ G+ VLD CAAPG K I +++ + GS+T
Sbjct: 222 IASTEFFQNGQVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMKNEGSLTS 281
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174
+D+ RH++ L+Q+ A +R L + D T
Sbjct: 282 LDLHRHKV----KLIQEGA--ERLGLTIIDAQTM 309
>gi|223940862|ref|ZP_03632690.1| sun protein [bacterium Ellin514]
gi|223890472|gb|EEF57005.1| sun protein [bacterium Ellin514]
Length = 444
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 14/115 (12%)
Query: 74 SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG 133
S PP +A ++K G Y D ++ +V L++ A VLDLCAAPG K MI +
Sbjct: 232 SHPP---LAGLKSFKDGFFYIQDPSTLLSVRELDVKAAHSVLDLCAAPGGKTTMIAQQMQ 288
Query: 134 DSGSVTGVDVARHRLAACRTLLQKYA-LGDRCRLFVADGTTFSLAPLRLLLDPGS 187
+ G + D++ RLA R + Y LG C S+AP ++ +P
Sbjct: 289 NRGQIVAQDISDDRLALLR---ENYVRLGVTC-------VVASIAPNAVIANPAQ 333
>gi|381158502|ref|ZP_09867735.1| tRNA/rRNA cytosine-C5-methylase [Thiorhodovibrio sp. 970]
gi|380879860|gb|EIC21951.1| tRNA/rRNA cytosine-C5-methylase [Thiorhodovibrio sp. 970]
Length = 567
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 60/142 (42%), Gaps = 6/142 (4%)
Query: 43 RLKTGNEADLEEIEAELKCK---LEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAAS 99
RL ADL I+AE L V W LP K Y G + + AS
Sbjct: 102 RLSVSELADL--IQAEENADPPVLAPVAWSPDALCLPAGFKAGQRWWYCAGLAHAQEEAS 159
Query: 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159
+++ G VLDLCAAPG K + +G+ G+V D AR R+AA + L +
Sbjct: 160 QLPARLMDLRPGLRVLDLCAAPGGKTAQMALALGNRGTVLANDFARERIAALQGNLDRLG 219
Query: 160 LGDRCRLFVADGTTFSLAPLRL 181
+ + + DG F A R
Sbjct: 220 VVNVSTTW-GDGGNFPAAAGRF 240
>gi|357008066|ref|ZP_09073065.1| hypothetical protein PelgB_01210, partial [Paenibacillus elgii B69]
Length = 287
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 19/210 (9%)
Query: 14 LPEAFLDFLKENGLDPSVYSA---ADSTPRYIRLKTGN-EADLEEIEAELKCKLEKVVWL 69
LPEAF K GL + YSA + R+ L+ + +E+ + +LE V W
Sbjct: 6 LPEAFKQ--KMEGLLEAEYSAFLASYGEERHYGLRVNTLKLSVEQFRGLTRMELETVPWA 63
Query: 70 -SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
+GFY D + Y G Y + ++ A L++ G+ VLDLCAAPG K +
Sbjct: 64 ETGFYYREGDGRPGKHPHYHAGLYYIQEPSAMAPAELLDVRPGERVLDLCAAPGGKTTQL 123
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYAL-GDRCRLFVADGT-----TFSLAPLRLL 182
+ +G + DV R+ A L++ L G R + + + TF+ ++L
Sbjct: 124 AAKLQGTGLIVANDVHPDRVKA---LVKNIELSGVRNAVVLNEDPAKLEGTFTGYFDKIL 180
Query: 183 LD-PGSCNSVLQEKDDTFREWTSRIPWKER 211
+D P S + ++++D + W R W E+
Sbjct: 181 IDAPCSGEGMFRKEEDMAKVW--RPDWPEK 208
>gi|418021016|ref|ZP_12660187.1| ribosomal RNA small subunit methyltransferase [Candidatus Regiella
insecticola R5.15]
gi|347603634|gb|EGY28428.1| ribosomal RNA small subunit methyltransferase [Candidatus Regiella
insecticola R5.15]
Length = 389
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+ QG + DA++ + L+ G+++LDLCAAPG K IL+ + V VD+ +
Sbjct: 222 GFSQGWVTVQDASAQGCIDLLDPKNGEYILDLCAAPGGKTTYILE-VAPKAEVLAVDIDK 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFSL-----APLRLLLD-PGSCNSVLQEKDDTF 199
RL + LQ+ L + R+ + DG T + R+LLD P S V++ D
Sbjct: 281 QRLRCVKENLQRLQL--QARIKIGDGRTPDIWCGEQLFDRILLDAPCSATGVIRRHPDI- 337
Query: 200 REWTSR 205
+W R
Sbjct: 338 -KWLRR 342
>gi|289422320|ref|ZP_06424170.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
anaerobius 653-L]
gi|289157265|gb|EFD05880.1| ribosomal RNA small subunit methyltransferase B [Peptostreptococcus
anaerobius 653-L]
Length = 446
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 40/81 (49%)
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVT 139
+I +K G I D +S ALN VLDLCAAPG K C I +++ DSGSV
Sbjct: 226 QIENKDLFKSGYISVQDISSMMVARALNPKKNSKVLDLCAAPGGKSCHIGEMMKDSGSVL 285
Query: 140 GVDVARHRLAACRTLLQKYAL 160
DV H++ + + L
Sbjct: 286 ACDVFDHKIKLIKAYSNRLGL 306
>gi|126649674|ref|ZP_01721910.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905]
gi|126593393|gb|EAZ87338.1| 16S rRNA m(5)C 967 methyltransferase [Bacillus sp. B14905]
Length = 453
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 21 FLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAE-LKCKLEKVVWLSGFYSLPPDI 79
L EN + P T R K E + E+EAE L K +V+ + +
Sbjct: 175 MLHENNVPPM------QTVRVNTTKVTVEQAIAELEAEGLTAKQSEVIPECLHLT---NG 225
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVT 139
+ A + A+K+G I D +S + LN S G VLD+CAAPG K + +I+ + GS+
Sbjct: 226 QPARTHAFKEGHITIQDESSMIPANVLNPSPGMRVLDMCAAPGGKTTHLAEIMKNEGSIL 285
Query: 140 GVDVARHRL 148
D+ H+L
Sbjct: 286 ATDLHPHKL 294
>gi|375082408|ref|ZP_09729468.1| tRNA/RNA cytosine-C5-methylase [Thermococcus litoralis DSM 5473]
gi|374742901|gb|EHR79279.1| tRNA/RNA cytosine-C5-methylase [Thermococcus litoralis DSM 5473]
Length = 450
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
YK+G D AS L G+ VLDL AAPG+K + ++ ++G + VD +
Sbjct: 238 YKEGYFVIQDLASAYVAHVLAPEKGERVLDLAAAPGSKTFHVAHLMENTGKIVAVDYSAE 297
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFS-LAPLRLLLDPGSCNSVLQEKDDTFREWTSR 205
RL + ++ + + +L ADG F P ++ C+S T+R++
Sbjct: 298 RLQKMKAKMKVLGVKN-VKLVHADGMKFKDKEPFDKIILDAPCSS-----SGTYRQFPE- 350
Query: 206 IPWKERKRAVKARENAASKAIVRSEHPEL 234
+ W+ ++ +K + KA++R+ + L
Sbjct: 351 VKWRFDEKKIK-KVIQVQKAMIRNAYKNL 378
>gi|160915657|ref|ZP_02077865.1| hypothetical protein EUBDOL_01664 [Eubacterium dolichum DSM 3991]
gi|158432133|gb|EDP10422.1| NOL1/NOP2/sun family protein [Eubacterium dolichum DSM 3991]
Length = 444
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Query: 14 LPEAFLDFLKEN-GLDPSVYSAADSTPRY--IRLKTGNEADLEEIEAELKCKLE-KVVWL 69
+ E FL +++ G + Y + S P Y +RL T + ++EI E C L+ +
Sbjct: 1 MKEVFLQRMQQYLGNEYEAYVESLSKPLYRGLRLNT-TKTTIQEIMEEKLCTLKPSAICN 59
Query: 70 SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
+Y + + A+ G Y + ++ +AV L + GD VLDLCAAPG K I
Sbjct: 60 KAYYIQDEESSLGNHAAHAAGLFYMQEPSASSAVEILGVEKGDWVLDLCAAPGGKTTQIA 119
Query: 130 DIIGDSGSVTGVDVARHR 147
D + +G + ++ R
Sbjct: 120 DALAHTGFLVANEIDPKR 137
>gi|348514740|ref|XP_003444898.1| PREDICTED: putative methyltransferase NSUN5-like [Oreochromis
niloticus]
Length = 495
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 57/144 (39%), Gaps = 21/144 (14%)
Query: 32 YSAADSTPRYIRLKT--------------------GNEADLEEIEAELKCKLEKVVWLSG 71
+ A D PRY+R+ T G + LE++ + + L + L
Sbjct: 126 HPAGDQLPRYVRVNTLKTTVEDVVDYLKRDGFSYLGKASRLEDLSLKDRYFLSDL-HLPE 184
Query: 72 FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDI 131
P YK G I D AS L+ S G H++D CAAPG K + I
Sbjct: 185 LLVFSPKTDFHDHFLYKAGHIVLQDKASCLPAHLLSPSPGSHIIDACAAPGNKTSQLAAI 244
Query: 132 IGDSGSVTGVDVARHRLAACRTLL 155
+ + G + D+ RLA TLL
Sbjct: 245 MKNKGRLFAFDLDGKRLATMSTLL 268
>gi|332159509|ref|YP_004424788.1| fmu protein [Pyrococcus sp. NA2]
gi|331034972|gb|AEC52784.1| fmu protein [Pyrococcus sp. NA2]
Length = 451
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 83 TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVD 142
+S A+K+GKI + AS A LN G+ V+DL AAPG K + +++ + G + D
Sbjct: 234 SSKAFKKGKIIVQEEASAVASIVLNPQPGEIVVDLAAAPGGKTTHMAELMKNKGKIYAFD 293
Query: 143 VARHRLAACRTLLQKYAL 160
+ + R+ + +Q+ +
Sbjct: 294 IDKMRMKRLKEFVQRMGI 311
>gi|238854793|ref|ZP_04645123.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 269-3]
gi|260664024|ref|ZP_05864877.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii SJ-7A-US]
gi|238832583|gb|EEQ24890.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii 269-3]
gi|260561910|gb|EEX27879.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
jensenii SJ-7A-US]
Length = 437
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 78 DIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGS 137
D I + +K G+I D A+ V ++ DHVLD CAAPG K + + + G
Sbjct: 216 DHSIVNTNEFKSGQITIQDEAASLVVDCFDLRENDHVLDTCAAPGGKTTQLAENLS-HGK 274
Query: 138 VTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171
VT +D+ + +L + Q+ + DR D
Sbjct: 275 VTSLDIHKKKLNLIKKYAQRMHVDDRVETLALDA 308
>gi|377809773|ref|YP_005004994.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
claussenii ATCC BAA-344]
gi|361056514|gb|AEV95318.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
claussenii ATCC BAA-344]
Length = 422
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
++ S +++G I D ++ +++ G VLD CAAPG K I + +G +G V
Sbjct: 199 LSRSELFQKGDIIAQDESAMLVAEVMDVKDGMKVLDACAAPGGKTTQIAEYVGQNGKVVA 258
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ HRL + ++ L DR + D +
Sbjct: 259 WDIHDHRLDLIKKNARRMQLSDRIEVEKQDAS 290
>gi|15924207|ref|NP_371741.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus Mu50]
gi|15926800|ref|NP_374333.1| hypothetical protein SA1060 [Staphylococcus aureus subsp. aureus
N315]
gi|156979538|ref|YP_001441797.1| hypothetical protein SAHV_1207 [Staphylococcus aureus subsp. aureus
Mu3]
gi|387150360|ref|YP_005741924.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus 04-02981]
gi|13701017|dbj|BAB42312.1| SA1060 [Staphylococcus aureus subsp. aureus N315]
gi|14246987|dbj|BAB57379.1| similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus Mu50]
gi|156721673|dbj|BAF78090.1| hypothetical protein SAHV_1207 [Staphylococcus aureus subsp. aureus
Mu3]
gi|285816899|gb|ADC37386.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus 04-02981]
Length = 461
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 245 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 304
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 305 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 335
>gi|379020926|ref|YP_005297588.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M013]
gi|418950782|ref|ZP_13502925.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-160]
gi|359830235|gb|AEV78213.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M013]
gi|375375613|gb|EHS79186.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-160]
Length = 435
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|384547461|ref|YP_005736714.1| RNA-binding protein [Staphylococcus aureus subsp. aureus ED133]
gi|387780326|ref|YP_005755124.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus LGA251]
gi|417903350|ref|ZP_12547197.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21269]
gi|298694510|gb|ADI97732.1| probable RNA-binding protein [Staphylococcus aureus subsp. aureus
ED133]
gi|341849971|gb|EGS91104.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21269]
gi|344177428|emb|CCC87896.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus LGA251]
Length = 435
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|88194923|ref|YP_499723.1| sun protein [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|379014408|ref|YP_005290644.1| 16S rRNA methyltransferase B [Staphylococcus aureus subsp. aureus
VC40]
gi|417650103|ref|ZP_12299880.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21189]
gi|440734663|ref|ZP_20914275.1| sun protein [Staphylococcus aureus subsp. aureus DSM 20231]
gi|87202481|gb|ABD30291.1| sun protein [Staphylococcus aureus subsp. aureus NCTC 8325]
gi|329724759|gb|EGG61264.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21189]
gi|374363105|gb|AEZ37210.1| 16S rRNA methyltransferase B [Staphylococcus aureus subsp. aureus
VC40]
gi|436431691|gb|ELP29044.1| sun protein [Staphylococcus aureus subsp. aureus DSM 20231]
Length = 435
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|390456474|ref|ZP_10242002.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus peoriae KCTC
3763]
Length = 537
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 8/199 (4%)
Query: 14 LPEAFLDFLKENGLDP--SVYSAADSTPRY-IRLKTGNEADLEEIEAELKCKLEKVVWLS 70
LP AF+ +++ D + +A + TP IR+ T + +E +A +L + W S
Sbjct: 5 LPTAFVKRMEQLLGDEFEAFMAAYEHTPHAGIRVNT-LKIPVEAFKAISPFELRPIPWCS 63
Query: 71 GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
+ +P K Y G Y + ++ + V LN++ + VLDLCAAPG K I
Sbjct: 64 TGFYIPHGTKPGLHPYYHAGLYYVQEPSAMSPVELLNVAVDETVLDLCAAPGGKSTQIAA 123
Query: 131 IIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL---RLLLD-PG 186
+ SG + D++ R A ++ Y + + L + P ++L+D P
Sbjct: 124 KLQGSGVLVTNDISAERTKALAKNVELYGVRNAVVLNESPDRIAEAFPHFFDKILIDAPC 183
Query: 187 SCNSVLQEKDDTFREWTSR 205
S + ++ +D ++W +
Sbjct: 184 SGEGMFRKDEDMAKQWETH 202
>gi|418561429|ref|ZP_13125920.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21262]
gi|371977640|gb|EHO94904.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21262]
Length = 435
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|417655578|ref|ZP_12305288.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21193]
gi|417797205|ref|ZP_12444403.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21305]
gi|329728796|gb|EGG65217.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21193]
gi|334267253|gb|EGL85717.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21305]
Length = 435
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|304381220|ref|ZP_07363873.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
gi|304340203|gb|EFM06144.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ATCC BAA-39]
Length = 435
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|20093735|ref|NP_613582.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19886632|gb|AAM01512.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 449
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 9/139 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+++G I D A+ LN G+ + DLCAAPG K I + D + VDV+R
Sbjct: 225 WREGHIVPQDEAAALVTEILNPQPGERIADLCAAPGGKTTHIAQLTEDEAEILAVDVSRV 284
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSLAPL------RLLLDPGSCNSVLQEKDDTFR 200
RL ++ + + AD P R+LLDP C+S+ + D
Sbjct: 285 RLRRLERFAERMVF-ENIEVLRADVRRLGRNPRYVGKFDRVLLDP-PCSSLGTLRSDPDV 342
Query: 201 EWTSRIPWKERKRAVKARE 219
+W P R+ A+K R+
Sbjct: 343 KWKIG-PRDIRELALKQRQ 360
>gi|257425270|ref|ZP_05601695.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 55/2053]
gi|257427930|ref|ZP_05604328.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257430563|ref|ZP_05606945.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257433324|ref|ZP_05609682.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus E1410]
gi|257436166|ref|ZP_05612213.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M876]
gi|282903770|ref|ZP_06311658.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C160]
gi|282905534|ref|ZP_06313389.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282908510|ref|ZP_06316340.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282913992|ref|ZP_06321779.1| sun protein [Staphylococcus aureus subsp. aureus M899]
gi|282918914|ref|ZP_06326649.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C427]
gi|282924037|ref|ZP_06331713.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C101]
gi|283957958|ref|ZP_06375409.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus A017934/97]
gi|293501025|ref|ZP_06666876.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 58-424]
gi|293509984|ref|ZP_06668692.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M809]
gi|293526572|ref|ZP_06671257.1| sun protein [Staphylococcus aureus subsp. aureus M1015]
gi|297591339|ref|ZP_06949977.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MN8]
gi|415683805|ref|ZP_11449007.1| hypothetical protein CGSSa00_05338 [Staphylococcus aureus subsp.
aureus CGS00]
gi|417887102|ref|ZP_12531241.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21195]
gi|418566587|ref|ZP_13130960.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21264]
gi|418582051|ref|ZP_13146129.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1605]
gi|418597658|ref|ZP_13161180.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21342]
gi|418603159|ref|ZP_13166550.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21345]
gi|418891850|ref|ZP_13445965.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1176]
gi|418897754|ref|ZP_13451824.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC341D]
gi|418900624|ref|ZP_13454681.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1214]
gi|418908928|ref|ZP_13462931.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG149]
gi|418917012|ref|ZP_13470971.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1267]
gi|418922799|ref|ZP_13476716.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1233]
gi|418982130|ref|ZP_13529838.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1242]
gi|418985797|ref|ZP_13533483.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1500]
gi|257271727|gb|EEV03865.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 55/2053]
gi|257274771|gb|EEV06258.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 65-1322]
gi|257278691|gb|EEV09310.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257281417|gb|EEV11554.1| RNA-binding Sun protein [Staphylococcus aureus subsp. aureus E1410]
gi|257284448|gb|EEV14568.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M876]
gi|282314009|gb|EFB44401.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C101]
gi|282316724|gb|EFB47098.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C427]
gi|282322060|gb|EFB52384.1| sun protein [Staphylococcus aureus subsp. aureus M899]
gi|282327572|gb|EFB57855.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus WW2703/97]
gi|282330826|gb|EFB60340.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus Btn1260]
gi|282595388|gb|EFC00352.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus C160]
gi|283790107|gb|EFC28924.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus A017934/97]
gi|290920644|gb|EFD97707.1| sun protein [Staphylococcus aureus subsp. aureus M1015]
gi|291096030|gb|EFE26291.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 58-424]
gi|291466928|gb|EFF09446.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus M809]
gi|297576225|gb|EFH94941.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MN8]
gi|315194103|gb|EFU24496.1| hypothetical protein CGSSa00_05338 [Staphylococcus aureus subsp.
aureus CGS00]
gi|341858524|gb|EGS99314.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21195]
gi|371969857|gb|EHO87295.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21264]
gi|374393720|gb|EHQ65024.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21342]
gi|374393888|gb|EHQ65191.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21345]
gi|377703092|gb|EHT27408.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1214]
gi|377704411|gb|EHT28720.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1242]
gi|377705615|gb|EHT29919.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1500]
gi|377710461|gb|EHT34699.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1605]
gi|377731182|gb|EHT55239.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1176]
gi|377736122|gb|EHT60152.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1233]
gi|377750186|gb|EHT74124.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1267]
gi|377753966|gb|EHT77876.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG149]
gi|377760789|gb|EHT84665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC341D]
Length = 435
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|70606823|ref|YP_255692.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius DSM 639]
gi|449067048|ref|YP_007434130.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius N8]
gi|449069320|ref|YP_007436401.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius Ron12/I]
gi|68567471|gb|AAY80400.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius DSM 639]
gi|449035556|gb|AGE70982.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius N8]
gi|449037828|gb|AGE73253.1| NOL1/NOP2/sun family protein [Sulfolobus acidocaldarius Ron12/I]
Length = 367
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 79/155 (50%), Gaps = 6/155 (3%)
Query: 40 RYIRLKTGNEADLEEIEAELKCK---LEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGID 96
++IR+ T +AD+E++ +L+ K L++ + F + +I+ +K G+I D
Sbjct: 102 QWIRVNTL-KADVEDVRRKLERKGVVLQRDSFEFLFRVIKAKSRISDLEEFKNGEIVIQD 160
Query: 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156
AS +V L+ + +L++ APG K +I I + V G+D++ R+ + L+
Sbjct: 161 KASVYSVVFLDPKPNEKILEIGCAPGMKTSLIQQITNNKSLVIGIDISSKRIKIQQDLMN 220
Query: 157 KYALGDRCRLFVADGTTFSLAPL-RLLLDPGSCNS 190
K + + L V+DG+ + ++L+D NS
Sbjct: 221 KLGV-ENVELVVSDGSNVPITKADKVLIDAPCTNS 254
>gi|49483380|ref|YP_040604.1| hypothetical protein SAR1193 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|295427702|ref|ZP_06820334.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus EMRSA16]
gi|49241509|emb|CAG40195.1| hypothetical protein SAR1193 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|295128060|gb|EFG57694.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus EMRSA16]
Length = 435
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|21282829|ref|NP_645917.1| hypothetical protein MW1100 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486056|ref|YP_043277.1| hypothetical protein SAS1151 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|297208139|ref|ZP_06924570.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|300912219|ref|ZP_07129662.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus TCH70]
gi|418934119|ref|ZP_13487942.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC128]
gi|418988038|ref|ZP_13535711.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1835]
gi|448742277|ref|ZP_21724227.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus KT/314250]
gi|21204268|dbj|BAB94965.1| MW1100 [Staphylococcus aureus subsp. aureus MW2]
gi|49244499|emb|CAG42928.1| hypothetical protein SAS1151 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|296887382|gb|EFH26284.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ATCC 51811]
gi|300886465|gb|EFK81667.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus TCH70]
gi|377719826|gb|EHT43996.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1835]
gi|377770862|gb|EHT94621.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC128]
gi|445546992|gb|ELY15268.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus KT/314250]
Length = 435
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|347523238|ref|YP_004780808.1| Fmu (Sun) domain containing protein [Pyrolobus fumarii 1A]
gi|343460120|gb|AEM38556.1| Fmu (Sun) domain protein [Pyrolobus fumarii 1A]
Length = 435
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 101/216 (46%), Gaps = 25/216 (11%)
Query: 11 KLPLPEAFLD-FLKENGLDPS--VYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
K PE F++ F+K GL+ + + A + +IR+ T +AD++E+ L EK V
Sbjct: 140 KYSFPEWFVEKFVKLLGLEETEKLLEALNEEVWWIRVNT-LKADVDEVAERLG---EKGV 195
Query: 68 WLSGFYSLPPDIKIATSMA-------YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
++ LP +++ +G+I D AS V AL+ GD+++D AA
Sbjct: 196 FVRRDPDLPYMLRVVDYSEPLHHLEEMWKGEIVFQDKASALVVEALDPQPGDYIVDFAAA 255
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA-DGTTFSLAPL 179
PG K ++ + + + +DV+R R++ +L+ Y + D ++ VA + F +P
Sbjct: 256 PGIKATLVAALTDNQAEMVLLDVSRERVSRMMRVLKMYGV-DLSKVHVAVVDSRFWWSPR 314
Query: 180 ---RLLLDPGSCNSVLQEKDDTF------REWTSRI 206
++LLD +S KD REW R
Sbjct: 315 KQPKILLDAPCSSSGAVGKDPAIKIHLESREWVDRF 350
>gi|416839261|ref|ZP_11902655.1| RNA-binding protein [Staphylococcus aureus O11]
gi|323440992|gb|EGA98699.1| RNA-binding protein [Staphylococcus aureus O11]
Length = 435
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|282910789|ref|ZP_06318592.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus WBG10049]
gi|384867901|ref|YP_005748097.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus TCH60]
gi|282325394|gb|EFB55703.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus WBG10049]
gi|312438406|gb|ADQ77477.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus TCH60]
Length = 435
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|419586722|ref|ZP_14122680.1| NOL1/NOP2/sun family protein [Campylobacter coli 67-8]
gi|380565775|gb|EIA88485.1| NOL1/NOP2/sun family protein [Campylobacter coli 67-8]
Length = 291
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 74/150 (49%), Gaps = 15/150 (10%)
Query: 43 RLKTGN---EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAA 98
RLK N E + +++ E + KL + +L D I +SM A+ + K Y +
Sbjct: 33 RLKCDNLTLEREFQDLNLEYE-KLNEYCYLFK----ACDKSILSSMQAFNEFKFYIQNYT 87
Query: 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
S L++ AG VLD+CAAPG K + + + + G + + ++ R + L+ Y
Sbjct: 88 SYLCALNLDVKAGQSVLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNY 147
Query: 159 ALGDRCRLFVADGTTF-SLAPL---RLLLD 184
G + R+F+ DG +L PL ++LLD
Sbjct: 148 --GVKARVFMKDGKNIGNLCPLKFDKILLD 175
>gi|57651786|ref|YP_186092.1| sun protein [Staphylococcus aureus subsp. aureus COL]
gi|148267708|ref|YP_001246651.1| sun protein [Staphylococcus aureus subsp. aureus JH9]
gi|150393766|ref|YP_001316441.1| sun protein [Staphylococcus aureus subsp. aureus JH1]
gi|151221339|ref|YP_001332161.1| hypothetical protein NWMN_1127 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161509389|ref|YP_001575048.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221142007|ref|ZP_03566500.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253315575|ref|ZP_04838788.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|255006004|ref|ZP_05144605.2| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257795727|ref|ZP_05644706.1| ribosomal small subunit methyltransferase B [Staphylococcus aureus
A9781]
gi|258415951|ref|ZP_05682221.1| RNA-binding Sun protein [Staphylococcus aureus A9763]
gi|258419698|ref|ZP_05682665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9719]
gi|258438740|ref|ZP_05689893.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
aureus A9299]
gi|258444554|ref|ZP_05692883.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
aureus A8115]
gi|258447613|ref|ZP_05695757.1| RNA-binding Sun protein [Staphylococcus aureus A6300]
gi|258449455|ref|ZP_05697558.1| RNA-binding Sun protein [Staphylococcus aureus A6224]
gi|258452514|ref|ZP_05700520.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A5948]
gi|258454834|ref|ZP_05702798.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A5937]
gi|269202832|ref|YP_003282101.1| sun protein [Staphylococcus aureus subsp. aureus ED98]
gi|282892703|ref|ZP_06300938.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A8117]
gi|282919999|ref|ZP_06327728.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9765]
gi|282927557|ref|ZP_06335173.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A10102]
gi|284024141|ref|ZP_06378539.1| sun protein [Staphylococcus aureus subsp. aureus 132]
gi|294848210|ref|ZP_06788957.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9754]
gi|296275238|ref|ZP_06857745.1| sun protein [Staphylococcus aureus subsp. aureus MR1]
gi|297245959|ref|ZP_06929818.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A8796]
gi|384861811|ref|YP_005744531.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|384864444|ref|YP_005749803.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|384869751|ref|YP_005752465.1| SA1060 protein [Staphylococcus aureus subsp. aureus T0131]
gi|415686404|ref|ZP_11450493.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus CGS01]
gi|415691064|ref|ZP_11453303.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus CGS03]
gi|417650916|ref|ZP_12300679.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21172]
gi|417892141|ref|ZP_12536195.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21201]
gi|418286418|ref|ZP_12899064.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21209]
gi|418317747|ref|ZP_12929163.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21232]
gi|418321722|ref|ZP_12933061.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VCU006]
gi|418424357|ref|ZP_12997479.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS1]
gi|418427352|ref|ZP_13000364.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS2]
gi|418430193|ref|ZP_13003109.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS3a]
gi|418433154|ref|ZP_13005934.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS4]
gi|418436829|ref|ZP_13008631.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS5]
gi|418439700|ref|ZP_13011408.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS6]
gi|418442753|ref|ZP_13014355.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS7]
gi|418445812|ref|ZP_13017288.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS8]
gi|418448756|ref|ZP_13020148.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS9]
gi|418451580|ref|ZP_13022914.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS10]
gi|418454636|ref|ZP_13025898.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS11a]
gi|418457512|ref|ZP_13028715.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS11b]
gi|418569097|ref|ZP_13133437.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21272]
gi|418570824|ref|ZP_13135085.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21283]
gi|418579048|ref|ZP_13143143.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1114]
gi|418599666|ref|ZP_13163146.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21343]
gi|418642849|ref|ZP_13205035.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-24]
gi|418647673|ref|ZP_13209736.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-88]
gi|418658916|ref|ZP_13220613.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-111]
gi|418663118|ref|ZP_13224643.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-122]
gi|418873545|ref|ZP_13427840.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-125]
gi|418875152|ref|ZP_13429412.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC93]
gi|418878066|ref|ZP_13432301.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1165]
gi|418880894|ref|ZP_13435113.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1213]
gi|418883823|ref|ZP_13438018.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1769]
gi|418886478|ref|ZP_13440626.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1150]
gi|418894916|ref|ZP_13449011.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1057]
gi|418903426|ref|ZP_13457467.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1770]
gi|418906152|ref|ZP_13460179.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC345D]
gi|418911823|ref|ZP_13465806.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG547]
gi|418920294|ref|ZP_13474227.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC348]
gi|418925450|ref|ZP_13479352.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG2018]
gi|418928474|ref|ZP_13482360.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1612]
gi|418931287|ref|ZP_13485128.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1750]
gi|418946950|ref|ZP_13499349.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-157]
gi|418955443|ref|ZP_13507383.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-189]
gi|418991079|ref|ZP_13538740.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1096]
gi|419775209|ref|ZP_14301151.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CO-23]
gi|419784875|ref|ZP_14310634.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-M]
gi|422742333|ref|ZP_16796339.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MRSA177]
gi|422745553|ref|ZP_16799492.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MRSA131]
gi|424768720|ref|ZP_18195980.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CM05]
gi|424785047|ref|ZP_18211850.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus CN79]
gi|440707204|ref|ZP_20887904.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21282]
gi|443636962|ref|ZP_21121055.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21236]
gi|448744035|ref|ZP_21725939.1| sun protein [Staphylococcus aureus KT/Y21]
gi|57285972|gb|AAW38066.1| sun protein [Staphylococcus aureus subsp. aureus COL]
gi|147740777|gb|ABQ49075.1| sun protein [Staphylococcus aureus subsp. aureus JH9]
gi|149946218|gb|ABR52154.1| sun protein [Staphylococcus aureus subsp. aureus JH1]
gi|150374139|dbj|BAF67399.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160368198|gb|ABX29169.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|257789699|gb|EEV28039.1| ribosomal small subunit methyltransferase B [Staphylococcus aureus
A9781]
gi|257839287|gb|EEV63761.1| RNA-binding Sun protein [Staphylococcus aureus A9763]
gi|257844283|gb|EEV68665.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9719]
gi|257847999|gb|EEV71992.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
aureus A9299]
gi|257850047|gb|EEV74000.1| ribosomal RNA small subunit methyltransferase [Staphylococcus
aureus A8115]
gi|257853804|gb|EEV76763.1| RNA-binding Sun protein [Staphylococcus aureus A6300]
gi|257857443|gb|EEV80341.1| RNA-binding Sun protein [Staphylococcus aureus A6224]
gi|257859732|gb|EEV82574.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A5948]
gi|257863217|gb|EEV85981.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A5937]
gi|262075122|gb|ACY11095.1| sun protein [Staphylococcus aureus subsp. aureus ED98]
gi|282590560|gb|EFB95637.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A10102]
gi|282594715|gb|EFB99699.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9765]
gi|282764700|gb|EFC04825.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A8117]
gi|294825010|gb|EFG41432.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9754]
gi|297177123|gb|EFH36377.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A8796]
gi|302751040|gb|ADL65217.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|312829611|emb|CBX34453.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|315131008|gb|EFT86992.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus CGS03]
gi|315198454|gb|EFU28783.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140968|gb|EFW32815.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MRSA131]
gi|320144317|gb|EFW36083.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus MRSA177]
gi|329313886|gb|AEB88299.1| SA1060 protein [Staphylococcus aureus subsp. aureus T0131]
gi|329727100|gb|EGG63556.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21172]
gi|341858108|gb|EGS98909.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21201]
gi|365167126|gb|EHM58602.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21209]
gi|365224337|gb|EHM65602.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VCU006]
gi|365245015|gb|EHM85667.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21232]
gi|371978282|gb|EHO95532.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21272]
gi|371983004|gb|EHP00152.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21283]
gi|374396324|gb|EHQ67565.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21343]
gi|375015962|gb|EHS09606.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-24]
gi|375029383|gb|EHS22711.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-88]
gi|375034751|gb|EHS27901.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-122]
gi|375037178|gb|EHS30230.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-111]
gi|375366082|gb|EHS70094.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-125]
gi|375370926|gb|EHS74718.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-189]
gi|375377147|gb|EHS80637.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-157]
gi|377694188|gb|EHT18553.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1165]
gi|377694722|gb|EHT19086.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1057]
gi|377697075|gb|EHT21430.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1114]
gi|377714569|gb|EHT38768.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1750]
gi|377714910|gb|EHT39108.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1769]
gi|377723201|gb|EHT47326.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1096]
gi|377725201|gb|EHT49316.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG547]
gi|377725431|gb|EHT49544.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1150]
gi|377731787|gb|EHT55840.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1213]
gi|377738386|gb|EHT62395.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1612]
gi|377742441|gb|EHT66426.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1770]
gi|377744519|gb|EHT68496.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG2018]
gi|377765452|gb|EHT89302.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC345D]
gi|377765653|gb|EHT89502.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC348]
gi|377770212|gb|EHT93974.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC93]
gi|383363633|gb|EID40964.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-M]
gi|383970893|gb|EID86983.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CO-23]
gi|387718588|gb|EIK06546.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS3a]
gi|387718939|gb|EIK06895.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS2]
gi|387720264|gb|EIK08176.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS1]
gi|387725820|gb|EIK13418.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS4]
gi|387727933|gb|EIK15433.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS5]
gi|387730803|gb|EIK18161.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS6]
gi|387735740|gb|EIK22850.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS8]
gi|387737418|gb|EIK24484.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus VRS7]
gi|387737972|gb|EIK25026.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS9]
gi|387744461|gb|EIK31225.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS10]
gi|387745751|gb|EIK32501.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS11a]
gi|387747244|gb|EIK33953.1| sun- sun protein ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus VRS11b]
gi|402348490|gb|EJU83477.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CM05]
gi|421956457|gb|EKU08786.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus CN79]
gi|436506243|gb|ELP42076.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21282]
gi|443406939|gb|ELS65509.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21236]
gi|445562631|gb|ELY18798.1| sun protein [Staphylococcus aureus KT/Y21]
Length = 435
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|408423415|emb|CCJ10826.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408425405|emb|CCJ12792.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408427393|emb|CCJ14756.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408429380|emb|CCJ26545.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408431368|emb|CCJ18683.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408433362|emb|CCJ20647.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408435353|emb|CCJ22613.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408437338|emb|CCJ24581.1| Similar to RNA-binding Sun protein [Staphylococcus aureus subsp.
aureus ST228]
Length = 431
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 215 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 274
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 275 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 305
>gi|416847424|ref|ZP_11907146.1| RNA-binding protein [Staphylococcus aureus O46]
gi|323442308|gb|EGA99938.1| RNA-binding protein [Staphylococcus aureus O46]
Length = 435
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|384549972|ref|YP_005739224.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus JKD6159]
gi|386830752|ref|YP_006237406.1| hypothetical protein SAEMRSA15_10500 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|302332821|gb|ADL23014.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus JKD6159]
gi|385196144|emb|CCG15765.1| hypothetical protein SAEMRSA15_10500 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
Length = 435
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|89098704|ref|ZP_01171586.1| sun protein [Bacillus sp. NRRL B-14911]
gi|89086666|gb|EAR65785.1| sun protein [Bacillus sp. NRRL B-14911]
Length = 448
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A S A+K+G + D +S A AL +HVLD CAAPG K I + +G++G V
Sbjct: 222 LAHSRAFKEGYLSIQDESSMLAAYALGAEKDNHVLDACAAPGGKTTHIAEKLGNTGQVIS 281
Query: 141 VDVARHRL 148
+D+ H++
Sbjct: 282 LDLHEHKV 289
>gi|406977399|gb|EKD99570.1| fmu (sun) protein, partial [uncultured bacterium]
Length = 153
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 76 PPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDS 135
P +++++ + A++ G+IY + +S V AL D VLDLCAAPG+K I +
Sbjct: 82 PSNLRLSETKAFETGQIYIQNLSSMLPVEALGPKPTDKVLDLCAAPGSKTLQIAQATQNL 141
Query: 136 GSVTGVDVARHR 147
+T V+ R+R
Sbjct: 142 AQITAVENNRNR 153
>gi|282916466|ref|ZP_06324228.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus D139]
gi|283770278|ref|ZP_06343170.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus H19]
gi|282319906|gb|EFB50254.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus D139]
gi|283460425|gb|EFC07515.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus H19]
Length = 435
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|20093808|ref|NP_613655.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19886728|gb|AAM01585.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 323
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 71 GFYSL-PPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
GF+ L P I I ++ Y G DAAS L+ GD VLD CAAPG K +
Sbjct: 84 GFWILNDPPISIGATLEYMMGYYVPQDAASMLPPVVLDPKPGDRVLDACAAPGGKTTHLA 143
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
++ + G++ +DV R+ A ++ L + + +
Sbjct: 144 QLMDNEGTLIAIDVDPDRMRALKSNLARCGVAN 176
>gi|253731834|ref|ZP_04865999.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253733545|ref|ZP_04867710.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus TCH130]
gi|385781445|ref|YP_005757616.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 11819-97]
gi|417899965|ref|ZP_12543864.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21259]
gi|418572296|ref|ZP_13136508.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21333]
gi|421150103|ref|ZP_15609759.1| RNA-binding protein [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|443639551|ref|ZP_21123557.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21196]
gi|253724433|gb|EES93162.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus USA300_TCH959]
gi|253728599|gb|EES97328.1| rRNA (cytosine-5-)-methyltransferase [Staphylococcus aureus subsp.
aureus TCH130]
gi|341843573|gb|EGS84796.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21259]
gi|364522434|gb|AEW65184.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 11819-97]
gi|371984780|gb|EHP01889.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21333]
gi|394329493|gb|EJE55595.1| RNA-binding protein [Staphylococcus aureus subsp. aureus str.
Newbould 305]
gi|443406758|gb|ELS65329.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21196]
Length = 435
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|408479913|ref|ZP_11186132.1| 16S rRNA methyltransferase B [Pseudomonas sp. R81]
Length = 436
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL++ D V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLVGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|375308041|ref|ZP_09773328.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus sp. Aloe-11]
gi|375080372|gb|EHS58593.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus sp. Aloe-11]
Length = 533
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 8/199 (4%)
Query: 14 LPEAFLDFLKENGLDP--SVYSAADSTPRY-IRLKTGNEADLEEIEAELKCKLEKVVWLS 70
LP AF+ +++ D + +A + TP IR+ T + +E +A +L + W S
Sbjct: 5 LPTAFVKRMEQLLGDEFEAFMAAYEHTPHAGIRVNT-LKIPVEAFKAISPFELRPIPWCS 63
Query: 71 GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
+ +P K Y G Y + ++ + V LN++ + VLDLCAAPG K I
Sbjct: 64 TGFYIPHGTKPGLHPYYHAGLYYVQEPSAMSPVELLNVAVDETVLDLCAAPGGKSTQIAA 123
Query: 131 IIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL---RLLLD-PG 186
+ SG + D++ R A ++ Y + + L + P ++L+D P
Sbjct: 124 KLQGSGVLVTNDISAERTKALAKNVELYGVRNAVVLNESPDRIAEAFPHFFDKILIDAPC 183
Query: 187 SCNSVLQEKDDTFREWTSR 205
S + ++ +D ++W +
Sbjct: 184 SGEGMFRKDEDMAKQWETH 202
>gi|222823945|ref|YP_002575519.1| NOL1/NOP2/sun family protein [Campylobacter lari RM2100]
gi|222539167|gb|ACM64268.1| NOL1/NOP2/sun family protein [Campylobacter lari RM2100]
Length = 297
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 4/109 (3%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSLPPDIK--IATSMAYKQGKIYGIDAASGAAVSALNIS 109
LEEI + K +K+ Y +P + K +++ A+ +GK Y + +S L +
Sbjct: 46 LEEILKKEGVKFKKIDEFC--YKIPQEFKSKLSSMNAFNEGKFYIQNYSSYLCAKTLGVK 103
Query: 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
AG+ VLD+CAAPG K + + + + G + ++++ R + ++ Y
Sbjct: 104 AGESVLDMCAAPGGKSLNLANFMQNEGYLASCELSKARFFTLKKTMENY 152
>gi|417891867|ref|ZP_12535924.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21200]
gi|341851153|gb|EGS92082.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21200]
Length = 435
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|258645366|ref|ZP_05732835.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus
DSM 15470]
gi|260402715|gb|EEW96262.1| ribosomal RNA small subunit methyltransferase B [Dialister invisus
DSM 15470]
Length = 454
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 79 IKIATSMAYKQ----GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD 134
IK T + + + G IY A+S L AGDHVLD+CAAPG+K I ++G+
Sbjct: 226 IKAGTDILFSEFLQTGLIYIQTASSMIPAKVLGPDAGDHVLDMCAAPGSKTTHIAALMGN 285
Query: 135 SGSVTGVDVARHRL 148
GS+ DV H++
Sbjct: 286 RGSIDAWDVYPHKV 299
>gi|431932083|ref|YP_007245129.1| tRNA/rRNA cytosine-C5-methylase [Thioflavicoccus mobilis 8321]
gi|431830386|gb|AGA91499.1| tRNA/rRNA cytosine-C5-methylase [Thioflavicoccus mobilis 8321]
Length = 490
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 8/159 (5%)
Query: 43 RLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAA 102
R+ +G ADL AE E + W L P ++ Y G + + AS
Sbjct: 47 RITSGALADLL---AEEGLAAEPLAWRPDSLRLVPGVRSGRFWWYCAGLAHAQEEASQLP 103
Query: 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
V+ L+ + G VLDLCAAPG K I +G+ G++ D A R+ A L + + +
Sbjct: 104 VTLLSAAPGHRVLDLCAAPGGKTAQIACALGNRGTLVANDFAAERIKALVGNLDRLGIVN 163
Query: 163 RCRLFVADGTTFSLAPL---RLLLD-PGSCNSVLQEKDD 197
V DG+ F A R+L+D P S L+ D
Sbjct: 164 TTVTRV-DGSNFPAAAGQFDRILVDAPCSSEGTLRRNPD 201
>gi|87161915|ref|YP_493807.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|87127889|gb|ABD22403.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
Length = 435
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQYDAT 309
>gi|417797986|ref|ZP_12445172.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21310]
gi|418656900|ref|ZP_13218686.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-105]
gi|334277108|gb|EGL95347.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21310]
gi|375032068|gb|EHS25324.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus IS-105]
Length = 435
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|387142826|ref|YP_005731219.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus TW20]
gi|269940709|emb|CBI49090.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus TW20]
Length = 435
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 PDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|295407155|ref|ZP_06816956.1| LOW QUALITY PROTEIN: ribosomal RNA small subunit methyltransferase
B [Staphylococcus aureus A8819]
gi|294968008|gb|EFG44036.1| LOW QUALITY PROTEIN: ribosomal RNA small subunit methyltransferase
B [Staphylococcus aureus A8819]
Length = 428
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|418312423|ref|ZP_12923932.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21334]
gi|365238068|gb|EHM78905.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21334]
Length = 435
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|418993833|ref|ZP_13541470.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG290]
gi|377746992|gb|EHT70962.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG290]
Length = 431
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 215 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 274
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 275 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 305
>gi|418978541|ref|ZP_13526341.1| 16S rRNA m(5)C 967 methyltransferase [Staphylococcus aureus subsp.
aureus DR10]
gi|379993365|gb|EIA14811.1| 16S rRNA m(5)C 967 methyltransferase [Staphylococcus aureus subsp.
aureus DR10]
Length = 435
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFKHDAT 309
>gi|386728897|ref|YP_006195280.1| 16S rRNA m(5)C 967 methyltransferase [Staphylococcus aureus subsp.
aureus 71193]
gi|387602491|ref|YP_005734012.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ST398]
gi|404478556|ref|YP_006709986.1| hypothetical protein C248_1247 [Staphylococcus aureus 08BA02176]
gi|418309667|ref|ZP_12921218.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21331]
gi|283470429|emb|CAQ49640.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus ST398]
gi|365237790|gb|EHM78629.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21331]
gi|384230190|gb|AFH69437.1| 16S rRNA m(5)C 967 methyltransferase [Staphylococcus aureus subsp.
aureus 71193]
gi|404440045|gb|AFR73238.1| hypothetical protein C248_1247 [Staphylococcus aureus 08BA02176]
Length = 435
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFKHDAT 309
>gi|310826142|ref|YP_003958499.1| RNA methylase [Eubacterium limosum KIST612]
gi|308737876|gb|ADO35536.1| RNA methylase [Eubacterium limosum KIST612]
Length = 462
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 75/180 (41%), Gaps = 20/180 (11%)
Query: 53 EEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGD 112
EE+ + +LE V W Y + DI+ + AY G Y + + + AL GD
Sbjct: 45 EEMARKTPFELEPVDWCPTGYYIDSDIRPGKNPAYYAGLYYVQEPTAMTSAEALAPEPGD 104
Query: 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
VLDLCAAPG K + ++G G + ++ +R + ++ R+ V +
Sbjct: 105 WVLDLCAAPGGKSTQLACMLGGQGLLVANELVNNRAEILASNVE--------RMGVPNAL 156
Query: 173 TFSLAPLRL-----------LLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKAREN 220
F+ P RL L+D P S + ++ + EW KR +K E+
Sbjct: 157 LFNEFPERLAARFRERFDKILVDAPCSGEGMFRKDNGAAEEWNPERVLHCAKRQIKILES 216
>gi|302386349|ref|YP_003822171.1| Fmu (Sun) domain-containing protein [Clostridium saccharolyticum
WM1]
gi|302196977|gb|ADL04548.1| Fmu (Sun) domain protein [Clostridium saccharolyticum WM1]
Length = 454
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 62 KLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
KL+ V W+ + D + A Y G Y + ++ S LNI GD VLDLCAAP
Sbjct: 57 KLKPVPWIPNGFYYEGDERPAKDPYYYAGLYYLQEPSAMTPASLLNIVPGDKVLDLCAAP 116
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRC-------RLFVADGTTF 174
G K + + G + D++ R A L+ + +G+ C +L A G F
Sbjct: 117 GGKSTELGAKLKGKGLLVSNDISSSRAKALLKNLELWGIGNICVTSEEPKKLKEAFGEFF 176
Query: 175 SLAPLRLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
++L+D P S + ++ D + + P
Sbjct: 177 D----KILVDAPCSGEGMFRKDGDMVKSYEEHGP 206
>gi|374632236|ref|ZP_09704610.1| tRNA/rRNA cytosine-C5-methylase [Metallosphaera yellowstonensis
MK1]
gi|373526066|gb|EHP70846.1| tRNA/rRNA cytosine-C5-methylase [Metallosphaera yellowstonensis
MK1]
Length = 377
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHR 147
K+G + D AS AVS L+ G+ +L++ ++PG K +I + +S V VD+++ R
Sbjct: 157 KEGTLIPQDRASVLAVSVLDPKPGETILEVGSSPGVKTSLIQQLTRNSSQVVAVDISKKR 216
Query: 148 LAACRTLLQKYALGDRCRLFVADGTTF 174
+ + L++K+++ + L DG F
Sbjct: 217 IELQKELMKKWSV-ENVHLVQGDGINF 242
>gi|258423740|ref|ZP_05686626.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9635]
gi|418283099|ref|ZP_12895856.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21202]
gi|418306692|ref|ZP_12918467.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21194]
gi|418559078|ref|ZP_13123624.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21252]
gi|418889008|ref|ZP_13443144.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1524]
gi|257845972|gb|EEV70000.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus A9635]
gi|365168696|gb|EHM60034.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21202]
gi|365246408|gb|EHM86962.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21194]
gi|371975369|gb|EHO92663.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21252]
gi|377754518|gb|EHT78427.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIG1524]
Length = 435
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|315427045|dbj|BAJ48662.1| tRNA and rRNA cytosine-C5-methylases [Candidatus Caldiarchaeum
subterraneum]
gi|343485713|dbj|BAJ51367.1| tRNA and rRNA cytosine-C5-methylases [Candidatus Caldiarchaeum
subterraneum]
Length = 320
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
+ GFY+ P + + S+ + G +Y S L++ G VLDLCAAPG+K I
Sbjct: 76 VDGFYAEPEGL-LTDSLWHMLGYVYAQGPVSILVTELLDVEPGHWVLDLCAAPGSKTTHI 134
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL----RLLLD 184
+ G V DV+R R+ A + +Q+ + + L +ADG F R+++D
Sbjct: 135 AARLRGEGVVVANDVSRTRIKALSSNMQRCGVVNGV-LTLADGRRFGYRYRGMFDRVMID 193
Query: 185 PGSCNSVLQEKD-DTFREWTS 204
+ + KD R WT+
Sbjct: 194 APCTSLGIGSKDWSVLRNWTT 214
>gi|395495799|ref|ZP_10427378.1| 16S rRNA methyltransferase B [Pseudomonas sp. PAMC 25886]
Length = 436
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C I+++ D V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHIMEVQADLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSL----APL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSAELIAADGRDTAAWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|418280903|ref|ZP_12893725.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21178]
gi|365167004|gb|EHM58481.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21178]
Length = 435
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I ++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVFMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|269103777|ref|ZP_06156474.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
damselae subsp. damselae CIP 102761]
gi|268163675|gb|EEZ42171.1| ribosomal RNA small subunit methyltransferase B [Photobacterium
damselae subsp. damselae CIP 102761]
Length = 308
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 117/294 (39%), Gaps = 62/294 (21%)
Query: 15 PEAFLDFLKE---NGLDPSVYSAADSTPRYIRLKTGNEA--------DLEEIEAELKCKL 63
P L LK+ N +D + P ++R+ + D E I EL +
Sbjct: 26 PSWLLKLLKQAYPNDVDAICAANNTKAPMWLRVNRQHHNRDEYRKLLDAEGIATELHPQA 85
Query: 64 EKVVWL---SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
+ L Y LP ++QG + DAA+ A+ L AG+ +LD CAA
Sbjct: 86 GDALRLLSPCDVYKLP---------GFEQGWVSVQDAAAQLAIEYLQPQAGELILDCCAA 136
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA---------DG 171
PG K IL+ + S V +D HRLA LQ+ L + ++ A DG
Sbjct: 137 PGGKTAHILEHV-PSAQVVAIDCDEHRLARVHDNLQRLNL--QAKVLCADARYPEKWWDG 193
Query: 172 TTFSLAPLRLLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSE 230
F R+LLD P S V++ D I W R E+ A+ A +++E
Sbjct: 194 DKFD----RILLDAPCSATGVIRRHPD--------IKWLRRG------EDIAALAQLQAE 235
Query: 231 HPELIFYGRRSG------IVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDG 278
+ ++ +SG +T +E V S + D LV +E T+ G
Sbjct: 236 IFDAMWLQLKSGGTLVYATCSITPQENRDQV--SAFLTRTADATLVGSEATNPG 287
>gi|256845813|ref|ZP_05551271.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
3_1_36A2]
gi|256719372|gb|EEU32927.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
3_1_36A2]
Length = 435
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K GKI DA+S A L + VLD+CAAPG K ++ + + + G +
Sbjct: 212 IINSEEFKTGKIIAQDASSYLAAKNLGTMPNELVLDICAAPGGKTAVLAENMENIGEIIA 271
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+D+ +H++ T ++K + D + + D
Sbjct: 272 IDIHQHKIKLIDTNMKKLGI-DIVKAIIMDA 301
>gi|260823572|ref|XP_002604257.1| hypothetical protein BRAFLDRAFT_211078 [Branchiostoma floridae]
gi|229289582|gb|EEN60268.1| hypothetical protein BRAFLDRAFT_211078 [Branchiostoma floridae]
Length = 419
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 62/156 (39%), Gaps = 26/156 (16%)
Query: 23 KENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVW-------------- 68
+ L P + S PRY+R+ T + E IE KL+K +
Sbjct: 115 RNEDLLPDTVKSQVSLPRYVRVNTLKISVEEAIE-----KLKKAGFSLADKPSVEDLETG 169
Query: 69 -------LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
+ PP+ + YK G+I D AS L G V+D CAAP
Sbjct: 170 QFVQDPHIPALLVFPPETGFHDNQLYKSGEIILQDKASCIPAQVLAPPPGACVIDACAAP 229
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157
G K + ++ ++G + D+ RLA R+L Q+
Sbjct: 230 GNKTSHMASLMQNNGKIFAFDIDAKRLATMRSLTQR 265
>gi|50365012|ref|YP_053437.1| tRNA and rRNA cytosine-C5-methylase [Mesoplasma florum L1]
gi|50363568|gb|AAT75553.1| tRNA and rRNA cytosine-C5-methylases [Mesoplasma florum L1]
Length = 425
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S AY G+I D AS + LN + G VLD+C+APG KL + I+ ++G VTG
Sbjct: 220 IVKSDAYTSGQITIQDPASILVGNVLNPTKGSKVLDMCSAPGGKLTHLSMIMENTGQVTG 279
Query: 141 VDVARHRL 148
+++ +++
Sbjct: 280 FEISENKI 287
>gi|404368281|ref|ZP_10973638.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
ulcerans ATCC 49185]
gi|313690073|gb|EFS26908.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
ulcerans ATCC 49185]
Length = 432
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 84 SMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDV 143
S +K+GKI DA+S + LN S D VLD C+APG K ++ +++G+ G + +D+
Sbjct: 214 SDEFKEGKIIVQDASSYLSAKNLNPSEKDLVLDTCSAPGGKTAVLGELMGNKGELLALDI 273
Query: 144 ARHRL 148
H+L
Sbjct: 274 YPHKL 278
>gi|82750821|ref|YP_416562.1| RNA-binding protein [Staphylococcus aureus RF122]
gi|82656352|emb|CAI80770.1| probable RNA-binding protein [Staphylococcus aureus RF122]
Length = 435
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVGA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|419627976|ref|ZP_14160862.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23263]
gi|419629504|ref|ZP_14162228.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
60004]
gi|419639010|ref|ZP_14171051.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
86605]
gi|380605933|gb|EIB25876.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23263]
gi|380607936|gb|EIB27777.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
60004]
gi|380617506|gb|EIB36676.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
86605]
Length = 292
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNI 108
+EE+E E + K ++ + L D I +SM A+ + Y + +S L +
Sbjct: 38 IEELEKEFLKQKLKFKKINAYCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEV 97
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 98 KAGQRVLDMCAAPGGKSINLANFMQNTGYLACNEISRDRFFILQKNLKNY--GVNAKVFM 155
Query: 169 ADGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 156 KDGKNIGNLCPLKFDKILLD 175
>gi|423689105|ref|ZP_17663625.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens SS101]
gi|388000238|gb|EIK61567.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens SS101]
Length = 436
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL++ D V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEVEKDLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSL----APL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLTR--LGLSAELIAADGRDTAAWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|421894377|ref|ZP_16324866.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
pentosaceus IE-3]
gi|385272681|emb|CCG90238.1| ribosomal RNA small subunit methyltransferase B [Pediococcus
pentosaceus IE-3]
Length = 444
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I+ + +Y G + D ++ +++ G VLD CAAPG K I +IG++G VTG
Sbjct: 223 ISDTRSYIDGDLTVQDESAMLVAETMHLEKGQKVLDACAAPGGKTTQIAAMIGETGEVTG 282
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174
D+ + R+ + Q+ L D + V D F
Sbjct: 283 WDIYQKRVQLIQDNAQRMHL-DNVKTEVQDAIAF 315
>gi|332022336|gb|EGI62648.1| Putative methyltransferase NSUN5 [Acromyrmex echinatior]
Length = 631
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%)
Query: 74 SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG 133
+ PP Y+ GK+ D AS V LN +G VLD+CAAPG K + +
Sbjct: 195 AFPPSTIFHNHEGYRGGKLILQDKASSLPVHLLNPISGSTVLDMCAAPGMKATHVAAKLQ 254
Query: 134 DSGSVTGVDVARHRLAACRTLLQK 157
++G++ V++ R T L+K
Sbjct: 255 NNGTIYAVEIDAKRFKTLLTQLEK 278
>gi|310778567|ref|YP_003966900.1| sun protein [Ilyobacter polytropus DSM 2926]
gi|309747890|gb|ADO82552.1| sun protein [Ilyobacter polytropus DSM 2926]
Length = 434
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 84 SMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDV 143
S +K+GKI D +S A L GD VLD C+APG+K ++ +++ + G +T +D+
Sbjct: 215 SKEFKEGKITVQDGSSYLAAKMLGARPGDIVLDTCSAPGSKAVVLAELMENKGEITALDI 274
Query: 144 ARHRL 148
+H++
Sbjct: 275 HQHKI 279
>gi|419642574|ref|ZP_14174363.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
ATCC 33560]
gi|380624468|gb|EIB43116.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
ATCC 33560]
Length = 292
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 52 LEEIEAEL---KCKLEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAASGAAVSALN 107
+EE+E E K +K+ + D I +SM A+ + Y + +S L
Sbjct: 38 IEELEKEFLKQNLKFKKINVYCYLFD-AKDKAILSSMKAFNEAHFYIQNYSSYLCALNLE 96
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167
+ AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F
Sbjct: 97 VKAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEISRDRFFILQKNLKNY--GVNAKVF 154
Query: 168 VADGTTF-SLAPL---RLLLD 184
+ DG +L PL ++LLD
Sbjct: 155 MKDGKNIGNLCPLKFDKILLD 175
>gi|401402966|ref|XP_003881376.1| conserved hypothetical protein [Neospora caninum Liverpool]
gi|325115788|emb|CBZ51343.1| conserved hypothetical protein [Neospora caninum Liverpool]
Length = 810
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/35 (57%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Query: 265 YDKVLVDAECTHDGSIKHIQKF-ENWGWTTLQRRV 298
+DKVLVD ECTHDGS++H+QKF W W Q+++
Sbjct: 516 FDKVLVDVECTHDGSLRHMQKFGRQWRWDDFQKKM 550
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 72/187 (38%), Gaps = 66/187 (35%)
Query: 73 YSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDII 132
+SLPP + Y+ G I+ +DAAS AA +AL GD V DLC APG KL ++ + +
Sbjct: 219 FSLPPSVSPRNCTPYRLGLIHPLDAASAAAAAALRPEPGDVVCDLCCAPGNKLVLLANAV 278
Query: 133 ------------------------------GDS-----------------------GSVT 139
GDS G V
Sbjct: 279 AEPLGRRPSTRRRTRSHSHASNADGNSAAPGDSEQSGLSHVSLQSHPEPSFSSTRCGMVV 338
Query: 140 GVDVARHRLAACRTLLQKYALGDRCRLFV-ADGTTFSLAPLRLLLDPGSCNSVLQEKDDT 198
GV+ RHR CR ++++ LG R L V DG FS G C V ++ +
Sbjct: 339 GVEGRRHRGDVCRRIVRR--LGARNVLLVLQDGRRFS----------GGCTCVYGQEGEC 386
Query: 199 FREWTSR 205
FR +R
Sbjct: 387 FRSSKAR 393
>gi|315924869|ref|ZP_07921086.1| NOL1/NOP2/sun family protein [Pseudoramibacter alactolyticus ATCC
23263]
gi|315621768|gb|EFV01732.1| NOL1/NOP2/sun family protein [Pseudoramibacter alactolyticus ATCC
23263]
Length = 467
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 85/205 (41%), Gaps = 25/205 (12%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPR--YIRLKTGN-EADLEEIEAELKCKLEKVVWL- 69
LPEAF D ++ + + ADS R Y ++T + D + + + + V W
Sbjct: 3 LPEAFSDKMRTLMGSEAFAALADSYNRSAYKGIRTNTLKMDNGRMRSLFPFETKAVPWCP 62
Query: 70 SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
+GFY + D++ + Y G Y + + AL GD VLDLCAAPG K +
Sbjct: 63 TGFY-IGGDVRPGKQVGYYAGLYYVQEPTAMTPAEALGAEPGDRVLDLCAAPGGKSTQLA 121
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD----- 184
+ G + ++ + R A + ++ R+ +A+ S AP +L+
Sbjct: 122 CKLNGRGVLISNEIVKSRSAVLASNME--------RMGIANSVILSAAPDKLMAGFTGYF 173
Query: 185 -------PGSCNSVLQEKDDTFREW 202
P S + ++ D EW
Sbjct: 174 NKILVDAPCSGEGMFRKDPDVLAEW 198
>gi|344340441|ref|ZP_08771366.1| tRNA (cytosine-5-)-methyltransferase [Thiocapsa marina 5811]
gi|343799611|gb|EGV17560.1| tRNA (cytosine-5-)-methyltransferase [Thiocapsa marina 5811]
Length = 494
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%)
Query: 50 ADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNIS 109
A+L E+ AE + V L LP + K + Y G + + S ++++
Sbjct: 68 AELAELLAEQGLDAQPVPGLPAALRLPEETKAGRNWWYCAGLAHAQEEVSQLPAMLMDLA 127
Query: 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
G VLDLCAAPG K I +G+ G++ D+A R+ A + L + +
Sbjct: 128 PGQRVLDLCAAPGGKTAQIAFALGNRGTLVANDIAHARIKALQGNLDRLGV 178
>gi|319957197|ref|YP_004168460.1| RNA methylase, nol1/nop2/sun family [Nitratifractor salsuginis DSM
16511]
gi|319419601|gb|ADV46711.1| RNA methylase, NOL1/NOP2/sun family [Nitratifractor salsuginis DSM
16511]
Length = 319
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 14 LPEAFLDFLKENGLDPSVY--------SAADSTPRYIRLKTGNEADLEEIEAELKCKLEK 65
LP F L E P +Y S +T R LKT + +E+E+ L ++E
Sbjct: 10 LPPEFTQRL-ERLFPPHIYERVLQSFSSPKTTTFRVNPLKTDASSLQKELES-LGFEIEA 67
Query: 66 VVWLSG-FYSLPPDIK--IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPG 122
V WL G F L PD + + S A+ +G++Y + +S A L + VLDL AAPG
Sbjct: 68 VDWLPGAFRLLDPDQRRALTESGAFYEGRLYIQNLSSMLAPLILAPRPEEQVLDLAAAPG 127
Query: 123 AKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA-PL-- 179
K M+ ++ + G ++ V+ + R + ++ A + ++ DG + A P
Sbjct: 128 GKTLMMAGMMENRGWISAVEPVKERFHRLKRNIEN-AGAEIVHTYMKDGRSVGRACPAMF 186
Query: 180 -RLLLDPGSCNS 190
R+LLD C+S
Sbjct: 187 DRVLLD-APCSS 197
>gi|410460745|ref|ZP_11314418.1| 16S rRNA methyltransferase B [Bacillus azotoformans LMG 9581]
gi|409926675|gb|EKN63831.1| 16S rRNA methyltransferase B [Bacillus azotoformans LMG 9581]
Length = 446
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+AT+ +++G + D +S AL GD VLD CAAPG K I +++G+ G V
Sbjct: 221 LATTKMFQEGYVTIQDESSMLVARALGPQKGDKVLDSCAAPGGKTTHIAELLGNDGKVIS 280
Query: 141 VDVARHRLAACRTLLQKYALGD 162
VD+ H++ +++ L +
Sbjct: 281 VDLHPHKVKLIEEQVKRLKLTN 302
>gi|336113928|ref|YP_004568695.1| Fmu (Sun) domain-containing protein [Bacillus coagulans 2-6]
gi|335367358|gb|AEH53309.1| Fmu (Sun) domain protein [Bacillus coagulans 2-6]
Length = 458
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 4/154 (2%)
Query: 12 LPLPEAFLDFLKEN-GLDPSVYSAADSTPRYIRLKTGNEADLEEIE--AELKCKLEKVVW 68
+ LPE F++ + + G + + + + PR L+ N A + E E A +LEK+ +
Sbjct: 1 MELPETFMEKMGQLLGKEAADFFRSYEEPRASGLRL-NPAKISETEWHAHNPFQLEKIPF 59
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
SG+Y K + G Y + ++ L + GD VLDLCAAPG K I
Sbjct: 60 ASGYYFDEEKDKPGKHPYHAAGLYYIQEPSAMFIAGQLGLEKGDKVLDLCAAPGGKSTQI 119
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
IG++G + ++ R A +++ +
Sbjct: 120 ASGIGENGFLLANEIHPKRARALSENIERLGFSN 153
>gi|323484804|ref|ZP_08090161.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14163]
gi|323401910|gb|EGA94251.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14163]
Length = 468
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 53 EEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGD 112
E+ AE KL ++ W + D+K A Y G Y + ++ A S L + GD
Sbjct: 47 EQFAAECGWKLTQIPWAGDGFYYDRDLKPARHPWYFAGLYYLQEPSAMAPASLLPVEPGD 106
Query: 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
VLDLCAAPG K + + G + D++ R A L+ G+ C V+ T
Sbjct: 107 KVLDLCAAPGGKSTELAAKLQGEGLLFSNDISNSRAKALLKNLELAGAGNIC---VSSET 163
Query: 173 TFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
LA ++L+D P S + + D + ++ + P
Sbjct: 164 PEKLARYFEGFFDKILVDAPCSGEGMFRRDGDMVKSYSQKGP 205
>gi|323691877|ref|ZP_08106131.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14673]
gi|323504084|gb|EGB19892.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14673]
Length = 468
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 53 EEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGD 112
E+ AE KL ++ W + D+K A Y G Y + ++ A S L + GD
Sbjct: 47 EQFAAECGWKLTQIPWAGDGFYYDRDLKPARHPWYFAGLYYLQEPSAMAPASLLPVEPGD 106
Query: 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
VLDLCAAPG K + + G + D++ R A L+ G+ C V+ T
Sbjct: 107 KVLDLCAAPGGKSTELAAKLQGEGLLFSNDISNSRAKALLKNLELAGAGNIC---VSSET 163
Query: 173 TFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
LA ++L+D P S + + D + ++ + P
Sbjct: 164 PEKLARYFEGFFDKILVDAPCSGEGMFRRDGDMVKSYSQKGP 205
>gi|355627820|ref|ZP_09049451.1| hypothetical protein HMPREF1020_03530 [Clostridium sp. 7_3_54FAA]
gi|354820145|gb|EHF04571.1| hypothetical protein HMPREF1020_03530 [Clostridium sp. 7_3_54FAA]
Length = 468
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 10/162 (6%)
Query: 53 EEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGD 112
E+ AE KL ++ W + D+K A Y G Y + ++ A S L + GD
Sbjct: 47 EQFAAECGWKLTQIPWAGDGFYYDRDLKPARHPWYFAGLYYLQEPSAMAPASLLPVEPGD 106
Query: 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
VLDLCAAPG K + + G + D++ R A L+ G+ C V+ T
Sbjct: 107 KVLDLCAAPGGKSTELAAKLQGEGLLFSNDISNSRAKALLKNLELAGAGNIC---VSSET 163
Query: 173 TFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
LA ++L+D P S + + D + ++ + P
Sbjct: 164 PEKLARYFEGFFDKILVDAPCSGEGMFRRDGDMVKSYSQKGP 205
>gi|355677726|ref|ZP_09060493.1| hypothetical protein HMPREF9469_03530 [Clostridium citroniae
WAL-17108]
gi|354812812|gb|EHE97426.1| hypothetical protein HMPREF9469_03530 [Clostridium citroniae
WAL-17108]
Length = 461
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 22/216 (10%)
Query: 8 EISKLPLPEAFLDFLKE---NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLE 64
+ISKLP E FL +KE + + V S ++ +R T + EE++A + +E
Sbjct: 3 DISKLP--ERFLAEMKELLGDEYNDYVKSFEENWKPGLRANT-LKISPEELKAMVPWPME 59
Query: 65 KVVWLS-GFYSLPPD-----IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLC 118
V W GFY D ++ + AY G Y + ++ + L + GD VLDLC
Sbjct: 60 PVPWTGKGFYYGQEDETKESVRPSKHPAYYCGLYYLQEPSAMTPAAMLPVEPGDRVLDLC 119
Query: 119 AAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP 178
AAPG K + + G + D++ R R LL+ L + V + LA
Sbjct: 120 AAPGGKSTELGARLMGQGLLVSNDISYSR---ARALLKNLELAGIPNICVTSESPEKLAL 176
Query: 179 L------RLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
+ ++L+D P S + + ++D ++WT P
Sbjct: 177 VWRGFFDKILVDAPCSGEGMFRREEDMVKDWTVHGP 212
>gi|421851676|ref|ZP_16284369.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
gi|371480179|dbj|GAB29572.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471]
Length = 440
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 66 VVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKL 125
+V +G P ++A Y++G + DAA+ LN+ G+ V DLCAAPG K
Sbjct: 205 IVLPNGSVRYPAGTRVADLAGYEEGAFWVQDAAATLPARLLNVKEGEKVADLCAAPGGKT 264
Query: 126 CMILDIIGDSGSVTGVDVA-----RHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL- 179
+ +VTG VA +R+A + L + LG+ L GT APL
Sbjct: 265 AQL--------AVTGAQVAAIENNPNRMARLKENLARLGLGNVTTLQADAGTWQPDAPLD 316
Query: 180 RLLLD-PGSCNSVLQEKDDTFREWTSR 205
+LLD P S + D W R
Sbjct: 317 AILLDAPCSATGTARRHPDVL--WVKR 341
>gi|403234848|ref|ZP_10913434.1| 16S rRNA methyltransferase B [Bacillus sp. 10403023]
Length = 447
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + A+K+G D +S AL + D+VLD CAAPG K I I+ ++G V
Sbjct: 222 LANTKAFKEGYFTIQDESSMLVARALGVEKDDYVLDSCAAPGGKTTHIAQILQNTGKVIS 281
Query: 141 VDVARHRL 148
+D+ +H++
Sbjct: 282 LDLHKHKI 289
>gi|385264700|ref|ZP_10042787.1| RsmB [Bacillus sp. 5B6]
gi|385149196|gb|EIF13133.1| RsmB [Bacillus sp. 5B6]
Length = 447
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++ G++ D +S AL+ G+ VLD CAAPG K I +++ + GS+T
Sbjct: 222 IANTAFFQNGRVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMQNEGSLTS 281
Query: 141 VDVARHRL 148
+D+ RH++
Sbjct: 282 LDLHRHKV 289
>gi|223043738|ref|ZP_03613781.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
capitis SK14]
gi|417907062|ref|ZP_12550838.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
capitis VCU116]
gi|222442835|gb|EEE48937.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
capitis SK14]
gi|341596693|gb|EGS39284.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
capitis VCU116]
Length = 435
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S A+K G + D +S + + D VLD C+APG K C + +I+ G +
Sbjct: 219 IVNSRAFKDGYVSIQDKSSMMVAHIMKLGRDDKVLDACSAPGGKACHMAEILSPEGQIDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ + ++K L D F D T
Sbjct: 279 TDIHSHKIDLIKHNIKKLKL-DNIHAFQHDAT 309
>gi|418914315|ref|ZP_13468287.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC340D]
gi|377757817|gb|EHT81705.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus CIGC340D]
Length = 435
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IEAFQHDAT 309
>gi|258541970|ref|YP_003187403.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-01]
gi|384041891|ref|YP_005480635.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-12]
gi|384050406|ref|YP_005477469.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-03]
gi|384053516|ref|YP_005486610.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-07]
gi|384056748|ref|YP_005489415.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-22]
gi|384059389|ref|YP_005498517.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-26]
gi|384062683|ref|YP_005483325.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-32]
gi|384118759|ref|YP_005501383.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|421850228|ref|ZP_16283193.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus NBRC 101655]
gi|256633048|dbj|BAH99023.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-01]
gi|256636105|dbj|BAI02074.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-03]
gi|256639160|dbj|BAI05122.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-07]
gi|256642214|dbj|BAI08169.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-22]
gi|256645269|dbj|BAI11217.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-26]
gi|256648324|dbj|BAI14265.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-32]
gi|256651377|dbj|BAI17311.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-01-42C]
gi|256654368|dbj|BAI20295.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus IFO 3283-12]
gi|371458954|dbj|GAB28396.1| tRNA/rRNA cytosine-C5-methylase Nol1/Nop2/Sun [Acetobacter
pasteurianus NBRC 101655]
Length = 440
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 66 VVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKL 125
+V +G P ++A Y++G + DAA+ LN+ G+ V DLCAAPG K
Sbjct: 205 IVLPNGSVRYPAGTRVADLAGYEEGAFWVQDAAATLPARLLNVKEGEKVADLCAAPGGKT 264
Query: 126 CMILDIIGDSGSVTGVDVA-----RHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL- 179
+ +VTG VA +R+A + L + LG+ L GT APL
Sbjct: 265 AQL--------AVTGAQVAAIENNPNRMARLKENLARLGLGNVITLQADAGTWQPDAPLD 316
Query: 180 RLLLD-PGSCNSVLQEKDDTFREWTSR 205
+LLD P S + D W R
Sbjct: 317 AILLDAPCSATGTARRHPDVL--WVKR 341
>gi|314933391|ref|ZP_07840756.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
caprae C87]
gi|313653541|gb|EFS17298.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
caprae C87]
Length = 435
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S A+K G + D +S + + D VLD C+APG K C + +I+ G V
Sbjct: 219 IVNSRAFKDGYVSIQDKSSMMVAHIMKLGRDDKVLDACSAPGGKACHMAEILSPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ + ++K L D F D T
Sbjct: 279 TDIHLHKIDLIQHNIKKLKL-DNIHAFQHDAT 309
>gi|429095941|ref|ZP_19158047.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
dublinensis 582]
gi|426282281|emb|CCJ84160.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
dublinensis 582]
Length = 479
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 20/208 (9%)
Query: 14 LPEAFLDFLKEN---GLDPSVYSAADSTP--RYIR---LKTGNEADLEEIEAELKCKLEK 65
LPEAFLD ++E GL + AA P R IR LK EA L ++E+ +L
Sbjct: 9 LPEAFLDVMREAMPAGLAMDDFIAACQRPLRRSIRVNTLKISVEAFLAQVES-YGWQLTP 67
Query: 66 VVWLS-GFYSLPPD--IKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCAA 120
V W + GF+ D + + ++ + G Y +A+S V+AL + +A + V+D+ AA
Sbjct: 68 VPWCAEGFWIARDDEALPLGSTAEHLSGLFYIQEASSMLPVTALFADGNAPERVMDVAAA 127
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA-PL 179
PG+K I ++ + G + + + R+ + + + + L DG F A P
Sbjct: 128 PGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGIRN-VGLTHFDGRVFGAALPE 186
Query: 180 R---LLLD-PGSCNSVLQEKDDTFREWT 203
+ +LLD P S V+++ D R W+
Sbjct: 187 QFDAILLDAPCSGEGVVRKDPDALRNWS 214
>gi|384265156|ref|YP_005420863.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387898153|ref|YP_006328449.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
amyloliquefaciens Y2]
gi|380498509|emb|CCG49547.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387172263|gb|AFJ61724.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
amyloliquefaciens Y2]
Length = 447
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++ G++ D +S AL+ G+ VLD CAAPG K I +++ + GS+T
Sbjct: 222 IANTAFFQNGRVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTS 281
Query: 141 VDVARHRLAACRTLLQKYAL 160
+D+ RH++ + ++ L
Sbjct: 282 LDLHRHKVKLIKEGAERLGL 301
>gi|340758953|ref|ZP_08695531.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
varium ATCC 27725]
gi|251835901|gb|EES64439.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
varium ATCC 27725]
Length = 432
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 84 SMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDV 143
S +K GKI DA+S + LN + D VLD C+APG K ++ +++G+ G + +D+
Sbjct: 214 SNEFKDGKIIVQDASSYLSAKNLNPNEQDLVLDTCSAPGGKTAVLGELMGNKGEILALDI 273
Query: 144 ARHRL 148
H+L
Sbjct: 274 YPHKL 278
>gi|305664020|ref|YP_003860308.1| Fmu (Sun) domain-containing protein [Ignisphaera aggregans DSM
17230]
gi|304378589|gb|ADM28428.1| Fmu (Sun) domain protein [Ignisphaera aggregans DSM 17230]
Length = 417
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I T +K G I D AS V AL + D AAPG K +I+ + + +
Sbjct: 197 IRTLELFKNGSIVIQDKASIFTVLALRPEPDMVIYDFAAAPGIKTSLIMQLTENRARIIA 256
Query: 141 VDVARHRLAACRTLLQKYAL-GDRCRLFVADGTTFSLA 177
+D++R RL A + LL++Y + R L ++D S+A
Sbjct: 257 IDLSRRRLEAMKLLLKRYGVDTSRVDLVLSDSRYISMA 294
>gi|262068291|ref|ZP_06027903.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
periodonticum ATCC 33693]
gi|291378029|gb|EFE85547.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
periodonticum ATCC 33693]
Length = 434
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K+GKI DA+S A L + VLD+CAAPG K ++ + + + G V
Sbjct: 211 IINSKEFKEGKIIAQDASSYLAAKNLGAKPNELVLDICAAPGGKTAVLAEEMQNKGEVIA 270
Query: 141 VDVARHR 147
+D+ +H+
Sbjct: 271 IDIHQHK 277
>gi|375362218|ref|YP_005130257.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum CAU B946]
gi|421731756|ref|ZP_16170879.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|451347055|ref|YP_007445686.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens IT-45]
gi|371568212|emb|CCF05062.1| sun protein [Bacillus amyloliquefaciens subsp. plantarum CAU B946]
gi|407073969|gb|EKE46959.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|449850813|gb|AGF27805.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens IT-45]
Length = 447
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++ G++ D +S AL+ G+ VLD CAAPG K I +++ + GS+T
Sbjct: 222 IANTAFFQNGRVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTS 281
Query: 141 VDVARHRLAACRTLLQKYAL 160
+D+ RH++ + ++ L
Sbjct: 282 LDLHRHKVKLIKEGAERLGL 301
>gi|124027398|ref|YP_001012718.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM
5456]
gi|123978092|gb|ABM80373.1| tRNA and rRNA cytosine-C5-methylase [Hyperthermus butylicus DSM
5456]
Length = 472
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 62/133 (46%), Gaps = 12/133 (9%)
Query: 44 LKTGNEADLEEIEAELK-----CKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAA 98
LKT E +EE++ E K ++ +V G Y S Y++GK + A
Sbjct: 213 LKTTVEEVVEELKREGKNPIVSTRVPVIVKFEGPYDF------DRSRLYREGKFVIQEEA 266
Query: 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
S AA L+ G V+DL AAPG K I +++ + G + D+ R R+ R +L++
Sbjct: 267 SAAASIILDPKPGMTVVDLAAAPGGKTSHIAELMKNHGRIYAFDIDRVRIKRMRMILRRM 326
Query: 159 ALGDRCRLFVADG 171
+ R+F D
Sbjct: 327 GITI-VRIFEKDA 338
>gi|154685990|ref|YP_001421151.1| RsmB [Bacillus amyloliquefaciens FZB42]
gi|154351841|gb|ABS73920.1| RsmB [Bacillus amyloliquefaciens FZB42]
Length = 447
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++ G++ D +S AL+ G+ VLD CAAPG K I +++ + GS+T
Sbjct: 222 IANTAFFQNGRVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTS 281
Query: 141 VDVARHRLAACRTLLQKYAL 160
+D+ RH++ + ++ L
Sbjct: 282 LDLHRHKVKLIKEGAERLGL 301
>gi|394993912|ref|ZP_10386651.1| 16S rRNA methyltransferase B [Bacillus sp. 916]
gi|393805236|gb|EJD66616.1| 16S rRNA methyltransferase B [Bacillus sp. 916]
Length = 447
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++ G++ D +S AL+ G+ VLD CAAPG K I +++ + GS+T
Sbjct: 222 IANTAFFQNGRVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTS 281
Query: 141 VDVARHRL 148
+D+ RH++
Sbjct: 282 LDLHRHKV 289
>gi|163814116|ref|ZP_02205508.1| hypothetical protein COPEUT_00269 [Coprococcus eutactus ATCC 27759]
gi|158450565|gb|EDP27560.1| NOL1/NOP2/sun family protein [Coprococcus eutactus ATCC 27759]
Length = 469
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 62 KLEKVVWL-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
+LE V W +GFY + Y G Y + ++ S L+I GD VLD+CAA
Sbjct: 53 ELEPVPWTKNGFYYDHKKYTPSKHPYYYAGLYYIQEPSAMTPASVLDIDEGDVVLDICAA 112
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRC 164
PG K + +G +G + D++ R A L+ + +G+ C
Sbjct: 113 PGGKSTELAAKLGGTGILISNDISNSRAKALLKNLELFGIGNMC 156
>gi|347753669|ref|YP_004861234.1| Fmu (Sun) domain-containing protein [Bacillus coagulans 36D1]
gi|347586187|gb|AEP02454.1| Fmu (Sun) domain protein [Bacillus coagulans 36D1]
Length = 458
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 4/154 (2%)
Query: 12 LPLPEAFLDFLKEN-GLDPSVYSAADSTPRYIRLKTGNEADLEEIE--AELKCKLEKVVW 68
+ LPE F++ + + G + + + PR L+ N A + E E A LEK+ +
Sbjct: 1 MELPETFMEKMGQLLGKEADDFFRSYEKPRASGLRL-NPAKVSETEWHAHNPFHLEKIPF 59
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
SG+Y K + G Y + ++ L + GD VLDLCAAPG K I
Sbjct: 60 ASGYYFDEEKDKPGKHPYHAAGLYYIQEPSAMFIAGQLGLEKGDKVLDLCAAPGGKSTQI 119
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
IG++G + ++ R+ A +++ +
Sbjct: 120 ASGIGENGFLLANEIHPKRVRALSENIERLGFSN 153
>gi|335357195|ref|ZP_08549065.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus animalis KCTC
3501]
Length = 449
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I + A+K G+ D ++ V ++ I+AGD VLD CAAPG K I + ++G VT
Sbjct: 225 IPATEAFKTGQAIVQDESAMLVVESMAINAGDQVLDACAAPGGKTTQIAAQL-ETGQVTS 283
Query: 141 VDVARHRLA 149
+D+ +H++A
Sbjct: 284 LDIHKHKVA 292
>gi|419693276|ref|ZP_14221268.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 9872]
gi|380672870|gb|EIB88013.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 9872]
Length = 292
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 52 LEEIEAEL---KCKLEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAASGAAVSALN 107
+EE+E E K +K+ + D I +SM A+ + Y + +S L
Sbjct: 38 IEELEKEFLKQNLKFKKINTYCYLFD-AKDKAILSSMKAFNEAHFYIQNYSSYLCALNLE 96
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167
+ AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F
Sbjct: 97 VKAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVF 154
Query: 168 VADGTTF-SLAPL---RLLLD 184
+ DG +L PL ++LLD
Sbjct: 155 MKDGKNIGNLCPLKFDKILLD 175
>gi|452855521|ref|YP_007497204.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
gi|452079781|emb|CCP21538.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus
amyloliquefaciens subsp. plantarum UCMB5036]
Length = 446
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++ G++ D +S AL+ G+ VLD CAAPG K I +++ + GS+T
Sbjct: 221 IANTAFFQNGRVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTS 280
Query: 141 VDVARHRLAACRTLLQKYAL 160
+D+ RH++ + ++ L
Sbjct: 281 LDLHRHKVKLIKEGAERLGL 300
>gi|146303359|ref|YP_001190675.1| Fmu (Sun) domain-containing protein [Metallosphaera sedula DSM
5348]
gi|145701609|gb|ABP94751.1| Fmu (Sun) domain protein [Metallosphaera sedula DSM 5348]
Length = 354
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 5/153 (3%)
Query: 41 YIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDI--KIATSMAYKQGKIYGIDAA 98
++R+ T + L+EI ELK K V F L I +I++ ++QG + D A
Sbjct: 98 WVRINTLKKG-LQEILDELKGKGYSFVPDRDFNYLVEWIFPQISSIPEFRQGLLIPQDKA 156
Query: 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
S V+ L+ + +L++ APG K +I + + V VD++ R+ A R LL K+
Sbjct: 157 SVMVVNVLDPKPEETILEIGGAPGTKTSLIQQLTHNKSYVISVDISARRVEAQRRLLAKW 216
Query: 159 ALGDRCRLFVADGTTFSLAPL-RLLLDPGSCNS 190
+ + L +AD T + ++L+D NS
Sbjct: 217 GVSN-VELVIADATELKVTHADKVLVDAPCSNS 248
>gi|429091377|ref|ZP_19154049.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
dublinensis 1210]
gi|426743989|emb|CCJ80162.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
dublinensis 1210]
Length = 479
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 20/208 (9%)
Query: 14 LPEAFLDFLKEN---GLDPSVYSAADSTP--RYIR---LKTGNEADLEEIEAELKCKLEK 65
LPEAFLD ++E GL + AA P R IR LK EA L ++E+ +L
Sbjct: 9 LPEAFLDVMREAMPAGLAMDDFIAACQRPLRRSIRVNTLKISVEAFLAQVES-YGWQLTP 67
Query: 66 VVWLS-GFYSLPPD--IKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCAA 120
V W + GF+ D + + ++ + G Y +A+S V+AL + +A + V+D+ AA
Sbjct: 68 VPWCAEGFWIARDDEALPLGSTAEHLSGLFYIQEASSMLPVTALFADGNAPERVMDVAAA 127
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA-PL 179
PG+K I ++ + G + + + R+ + + + + L DG F A P
Sbjct: 128 PGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGIRN-VGLTHFDGRVFGAALPE 186
Query: 180 R---LLLD-PGSCNSVLQEKDDTFREWT 203
+ +LLD P S V+++ D R W+
Sbjct: 187 QFDAILLDAPCSGEGVVRKDPDALRNWS 214
>gi|419662195|ref|ZP_14192502.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-831]
gi|380638722|gb|EIB56258.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-831]
Length = 292
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 52 LEEIEAEL---KCKLEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAASGAAVSALN 107
+EE+E E K +K+ + D I +SM A+ + Y + +S L
Sbjct: 38 IEELEKEFLKQNLKFKKINVYCYLFD-AKDKAILSSMKAFNEAHFYIQNYSSYLCALNLE 96
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167
+ AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F
Sbjct: 97 VKAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVF 154
Query: 168 VADGTTF-SLAPL---RLLLD 184
+ DG +L PL ++LLD
Sbjct: 155 MKDGKNIGNLCPLKFDKILLD 175
>gi|419625293|ref|ZP_14158314.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23223]
gi|419637725|ref|ZP_14169880.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 9879]
gi|380605067|gb|EIB25052.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23223]
gi|380614870|gb|EIB34178.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 9879]
Length = 292
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNI 108
+EE+E E + K ++ + L D I +SM A+ + Y + +S L +
Sbjct: 38 IEELEKEFLKQNLKFKKINAYCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEV 97
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 98 KAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVFM 155
Query: 169 ADGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 156 KDGKNIGNLCPLKFDKILLD 175
>gi|213512774|ref|NP_001133271.1| NOP2/Sun domain family, member 5 [Salmo salar]
gi|209148487|gb|ACI32940.1| methyltransferase NSUN5 [Salmo salar]
Length = 524
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 56/143 (39%), Gaps = 19/143 (13%)
Query: 32 YSAADSTPRYIR---LKTGNEADLEEIEAE-------------LKCKLEKVV---WLSGF 72
+ D PRY+R LKT E ++ + E L K + V LS
Sbjct: 126 HPEGDQLPRYVRVNTLKTTVEDAIDYFKREGFSYLGQAYRLDDLNLKGKSFVGDLHLSDL 185
Query: 73 YSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDII 132
P YK G I D AS LN G HVLD CAAPG K + I+
Sbjct: 186 LVFSPKTDFHDHNLYKAGHIILQDKASCLPAYLLNPPTGSHVLDACAAPGNKTSHLAAIM 245
Query: 133 GDSGSVTGVDVARHRLAACRTLL 155
+ G + D+ RL+ TLL
Sbjct: 246 KNKGRLFAFDLDAKRLSTMSTLL 268
>gi|86151702|ref|ZP_01069916.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
260.94]
gi|86153222|ref|ZP_01071426.1| NOL1\NOP2\sun family protein [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|315124151|ref|YP_004066155.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|419619022|ref|ZP_14152542.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
129-258]
gi|419669258|ref|ZP_14199048.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-11]
gi|85841331|gb|EAQ58579.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
260.94]
gi|85842948|gb|EAQ60159.1| NOL1\NOP2\sun family protein [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|315017873|gb|ADT65966.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
ICDCCJ07001]
gi|380593567|gb|EIB14390.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
129-258]
gi|380647695|gb|EIB64596.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-11]
Length = 292
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNI 108
+EE+E E + K ++ + L D I +SM A+ + Y + +S L +
Sbjct: 38 IEELEKEFLKQNLKFKKINAYCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEV 97
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 98 KAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVFM 155
Query: 169 ADGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 156 KDGKNIGNLCPLKFDKILLD 175
>gi|354477569|ref|XP_003500992.1| PREDICTED: putative methyltransferase NSUN5 [Cricetulus griseus]
Length = 415
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y+ G + D AS L+ G HV+D CAAPG K I ++ + G + D
Sbjct: 153 YRAGHLILQDKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFDQDAK 212
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSCNSVLQEKDDTFR 200
RLAA TLL + + C L D T S + R +LLDP S + +
Sbjct: 213 RLAAMATLLARAGV-SCCELAEKDFLTVSPSDQRYSQVQYILLDPSCSGSGMLSRQ--LE 269
Query: 201 EWTSRIPWKERKRAVKARENAA 222
E P KER +A+ + A
Sbjct: 270 EHGGGTPSKERLQALAGFQQRA 291
>gi|386319520|ref|YP_006015683.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius ED99]
gi|323464691|gb|ADX76844.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius ED99]
Length = 433
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ TS +++G I D +S + + GD VLD C+APG K C + +I+ D G+V
Sbjct: 218 VMTSELFQKGLISIQDKSSMFVAEYMELQPGDAVLDSCSAPGGKACHMAEILNDQGTVLA 277
Query: 141 VDVARHRLAACRTLLQKYAL 160
DV H++ ++K L
Sbjct: 278 TDVHAHKIQLIDHNIRKLHL 297
>gi|225389039|ref|ZP_03758763.1| hypothetical protein CLOSTASPAR_02784 [Clostridium asparagiforme
DSM 15981]
gi|225044897|gb|EEG55143.1| hypothetical protein CLOSTASPAR_02784 [Clostridium asparagiforme
DSM 15981]
Length = 532
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
Query: 53 EEIEAELKCKLEKVVWL-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAG 111
EE+ A L +LE V W+ +GFY + + AY G Y + ++ V L + G
Sbjct: 48 EELTAILPWRLEPVPWVKTGFYYDGDQARPSRHPAYYAGLYYLQEPSAMTPVELLPVEPG 107
Query: 112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171
D VLDLCAAPG K + + G + D++ R A L+ + + C +
Sbjct: 108 DRVLDLCAAPGGKSTQLGARLLGEGLLVSNDISNSRARALLKNLELAGIPNICVTSESPE 167
Query: 172 TTFSLAPL---RLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
+ PL ++L+D P S + + + ++W + P
Sbjct: 168 RLSQVFPLYFDKILVDAPCSGEGMFRRDGEMVKDWALKGP 207
>gi|198285547|gb|ACH85312.1| NOL1/NOP2/Sun domain family member 5-like [Salmo salar]
Length = 488
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 56/143 (39%), Gaps = 19/143 (13%)
Query: 32 YSAADSTPRYIR---LKTGNEADLEEIEAE-------------LKCKLEKVV---WLSGF 72
+ D PRY+R LKT E ++ + E L K + V LS
Sbjct: 126 HPEGDQLPRYVRVNTLKTTVEDAIDYFKREGFSYLGQAYRLDDLNLKGKSFVGDLHLSDL 185
Query: 73 YSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDII 132
P YK G I D AS LN G HVLD CAAPG K + I+
Sbjct: 186 LVFSPKTDFHDHNLYKAGHIILQDKASCLPAYLLNPPTGSHVLDACAAPGNKTSHLAAIM 245
Query: 133 GDSGSVTGVDVARHRLAACRTLL 155
+ G + D+ RL+ TLL
Sbjct: 246 KNKGRLFAFDLDAKRLSTMSTLL 268
>gi|74140144|dbj|BAE33793.1| unnamed protein product [Mus musculus]
Length = 465
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 84/229 (36%), Gaps = 33/229 (14%)
Query: 20 DFLKENGLDPSVYSAADSTPRYIRLKT--------------------GNEADLEEIEAEL 59
D L+E+ Y PR++R+ T G + LE++ A
Sbjct: 120 DLLQESSRPGQAYQ----VPRFVRVNTLKTRPEDAIDYFKRQGFSYQGRASSLEDLRALK 175
Query: 60 KCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCA 119
L P + Y+ G + D AS L+ G HV+D CA
Sbjct: 176 GQHFLLDPLLPELLVFPAQTDLHEHPLYRAGHLILQDKASCLPAMLLSPPPGSHVIDACA 235
Query: 120 APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL 179
APG K I ++ + G + D RLAA TL+ + + C L D T S +
Sbjct: 236 APGNKTSYIAALLKNQGKIFAFDQDAKRLAAMATLVARAGVSC-CELAEKDFLTVSPSDQ 294
Query: 180 R------LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAA 222
R +LLDP S + + E P KER +A+ + A
Sbjct: 295 RYSQVQYILLDPSCSGSGMLSRQ--LEEHGEGTPSKERLQALAGFQQRA 341
>gi|195996617|ref|XP_002108177.1| hypothetical protein TRIADDRAFT_52388 [Trichoplax adhaerens]
gi|190588953|gb|EDV28975.1| hypothetical protein TRIADDRAFT_52388 [Trichoplax adhaerens]
Length = 358
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 60/147 (40%), Gaps = 24/147 (16%)
Query: 35 ADSTPRYIRLKTGNEADLEEIEAELK-------------------CKLEKVVWLSGFY-- 73
A PRY+R+ T ++ IE + KL + ++ S +
Sbjct: 20 ASGIPRYVRVNTLKMTKVKAIERFIANGFQYIPSDLVYNAGTVDITKLREKIFTSDIHIE 79
Query: 74 ---SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
LPP + + Y G++ D AS LN ++D CAAPG K +
Sbjct: 80 NLLVLPPKSDLHDNEMYLNGEVVLQDKASCIPAFTLNPPPQSCIIDACAAPGNKTSHLAS 139
Query: 131 IIGDSGSVTGVDVARHRLAACRTLLQK 157
IIG+ G + D++ +R+ R LL K
Sbjct: 140 IIGNVGKIYAFDISPNRIKTMRELLDK 166
>gi|419659594|ref|ZP_14190119.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-979]
gi|419679147|ref|ZP_14208165.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
87459]
gi|419695083|ref|ZP_14222983.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23210]
gi|380639121|gb|EIB56631.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-979]
gi|380658196|gb|EIB74227.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
87459]
gi|380679870|gb|EIB94708.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23210]
Length = 292
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNI 108
+EE+E E + K ++ + L D I +SM A+ + Y + +S L +
Sbjct: 38 IEELEKEFLKQKLKFKKINAYCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEV 97
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 98 KAGQRVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVFM 155
Query: 169 ADGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 156 KDGKNIGNLCPLKFDKILLD 175
>gi|419623566|ref|ZP_14156693.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23218]
gi|424849560|ref|ZP_18274011.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
D2600]
gi|356487375|gb|EHI17326.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
D2600]
gi|380600684|gb|EIB21012.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23218]
Length = 292
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNI 108
+EE+E E + K ++ + L D I +SM A+ + Y + +S L +
Sbjct: 38 IEELEKEFLKQKLKFKKINAYCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEV 97
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 98 KAGQRVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVFM 155
Query: 169 ADGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 156 KDGKNIGNLCPLKFDKILLD 175
>gi|154146245|ref|NP_663389.2| putative methyltransferase NSUN5 [Mus musculus]
gi|118573086|sp|Q8K4F6.2|NSUN5_MOUSE RecName: Full=Putative methyltransferase NSUN5; AltName:
Full=NOL1/NOP2/Sun domain family member 5; AltName:
Full=Williams-Beuren syndrome chromosomal region 20A
protein homolog
gi|26347971|dbj|BAC37634.1| unnamed protein product [Mus musculus]
gi|74146333|dbj|BAE28935.1| unnamed protein product [Mus musculus]
gi|148687420|gb|EDL19367.1| NOL1/NOP2/Sun domain family, member 5 [Mus musculus]
gi|183396899|gb|AAI65967.1| NOL1/NOP2/Sun domain family, member 5 [synthetic construct]
Length = 465
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 84/229 (36%), Gaps = 33/229 (14%)
Query: 20 DFLKENGLDPSVYSAADSTPRYIRLKT--------------------GNEADLEEIEAEL 59
D L+E+ Y PR++R+ T G + LE++ A
Sbjct: 120 DLLQESSRPGQAYQ----VPRFVRVNTLKTRPEDAIDYFKRQGFSYQGRASSLEDLRALK 175
Query: 60 KCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCA 119
L P + Y+ G + D AS L+ G HV+D CA
Sbjct: 176 GQHFLLDPLLPELLVFPAQTDLHEHPLYRAGHLILQDKASCLPAMLLSPPPGSHVIDACA 235
Query: 120 APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL 179
APG K I ++ + G + D RLAA TL+ + + C L D T S +
Sbjct: 236 APGNKTSYIAALLKNQGKIFAFDQDAKRLAAMATLVARAGVSC-CELAEKDFLTVSPSDQ 294
Query: 180 R------LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAA 222
R +LLDP S + + E P KER +A+ + A
Sbjct: 295 RYSQVQYILLDPSCSGSGMLSRQ--LEEHGEGTPSKERLQALAGFQQRA 341
>gi|242002804|ref|XP_002436045.1| williams-beuren syndrome critical region protein, putative [Ixodes
scapularis]
gi|215499381|gb|EEC08875.1| williams-beuren syndrome critical region protein, putative [Ixodes
scapularis]
Length = 445
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
AASG AV AL + G V+D CAAPG K I ++ ++G + +D + R + R L+
Sbjct: 225 QAASGMAVVALAPTPGSVVIDACAAPGMKTTYIAALMENTGKILAMDHDQERTLSLRDLV 284
Query: 156 QKYALGDRCRLFVADGTT 173
Q+ + C++ AD T
Sbjct: 285 QRAGVSGICKVRTADFLT 302
>gi|86149856|ref|ZP_01068085.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|157414915|ref|YP_001482171.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
81116]
gi|384441270|ref|YP_005657573.1| NOL1\\NOP2\\sun family protein [Campylobacter jejuni subsp. jejuni
M1]
gi|419632407|ref|ZP_14164949.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23264]
gi|419633425|ref|ZP_14165861.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23269]
gi|419644042|ref|ZP_14175632.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 9081]
gi|419666854|ref|ZP_14196843.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-10]
gi|85839674|gb|EAQ56934.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|157385879|gb|ABV52194.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
81116]
gi|307747553|gb|ADN90823.1| NOL1\\NOP2\\sun family protein [Campylobacter jejuni subsp. jejuni
M1]
gi|380608931|gb|EIB28665.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23264]
gi|380612286|gb|EIB31817.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23269]
gi|380622809|gb|EIB41546.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 9081]
gi|380647002|gb|EIB63934.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-10]
Length = 292
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNI 108
+EE+E E + K ++ + L D I +SM A+ + Y + +S L +
Sbjct: 38 IEELEKEFLKQKLKFKKINAYCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEV 97
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 98 KAGQRVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVFM 155
Query: 169 ADGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 156 KDGKNIGNLCPLKFDKILLD 175
>gi|88597052|ref|ZP_01100288.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
84-25]
gi|317511456|ref|ZP_07968777.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
305]
gi|384447914|ref|YP_005655965.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
IA3902]
gi|407942068|ref|YP_006857710.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
PT14]
gi|419650795|ref|ZP_14182002.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-1025]
gi|419651769|ref|ZP_14182860.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-894]
gi|419654996|ref|ZP_14185861.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-988]
gi|419663968|ref|ZP_14194150.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-4]
gi|419665899|ref|ZP_14195954.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-7]
gi|419675029|ref|ZP_14204306.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
110-21]
gi|419677603|ref|ZP_14206747.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
87330]
gi|419690339|ref|ZP_14218549.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1893]
gi|88190741|gb|EAQ94714.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
84-25]
gi|284925896|gb|ADC28248.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
IA3902]
gi|315929042|gb|EFV08281.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
305]
gi|380627932|gb|EIB46280.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-1025]
gi|380630853|gb|EIB49071.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-894]
gi|380637798|gb|EIB55406.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-988]
gi|380641914|gb|EIB59222.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-4]
gi|380642348|gb|EIB59620.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-7]
gi|380652275|gb|EIB68770.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
110-21]
gi|380653911|gb|EIB70301.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
87330]
gi|380669016|gb|EIB84316.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1893]
gi|407905906|gb|AFU42735.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
PT14]
Length = 292
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 52 LEEIEAEL---KCKLEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAASGAAVSALN 107
+EE+E E K +K+ + D I +SM A+ + Y + +S L
Sbjct: 38 IEELEKEFLKQNLKFKKINVYCYLFD-AKDKAILSSMKAFNEAHFYIQNYSSYLCALNLE 96
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167
+ AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F
Sbjct: 97 VKAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVF 154
Query: 168 VADGTTF-SLAPL---RLLLD 184
+ DG +L PL ++LLD
Sbjct: 155 MKDGKNIGNLCPLKFDKILLD 175
>gi|419657212|ref|ZP_14187871.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-1]
gi|380635168|gb|EIB52998.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-1]
Length = 292
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 52 LEEIEAEL---KCKLEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAASGAAVSALN 107
+EE+E E K +K+ + D I +SM A+ + Y + +S L
Sbjct: 38 IEELEKEFLKQNLKFKKINVYCYLFD-AKDKAILSSMKAFNEAHFYIQNYSSYLCALNLE 96
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167
+ AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F
Sbjct: 97 VKAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVF 154
Query: 168 VADGTTF-SLAPL---RLLLD 184
+ DG +L PL ++LLD
Sbjct: 155 MKDGKNIGNLCPLKFDKILLD 175
>gi|365972378|ref|YP_004953939.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
cloacae EcWSU1]
gi|365751291|gb|AEW75518.1| Ribosomal RNA small subunit methyltransferase B [Enterobacter
cloacae EcWSU1]
Length = 438
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 69 LSGFY--SLPPDIKIATSM------AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
+SGF + P +++A+ + +G + DA++ ++ L G+H+LDLCAA
Sbjct: 206 MSGFTHEAYPDAVRLASPAPVHALPGFDEGWVTVQDASAQRCMAWLEPKNGEHILDLCAA 265
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG--------- 171
PG K IL+ + +V VDV RL+ L++ LG + ++ DG
Sbjct: 266 PGGKTTHILE-VAPQANVMAVDVDEQRLSRVYDNLKR--LGMKAQVKQGDGRKPAEWCGE 322
Query: 172 TTFSLAPLRLLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVK 216
T F R+LLD P S V++ D I W R R +K
Sbjct: 323 TQFD----RILLDAPCSATGVIRRHPD--------IKWLRRDRDIK 356
>gi|425736791|ref|ZP_18855067.1| 16S rRNA methyltransferase B [Staphylococcus massiliensis S46]
gi|425483263|gb|EKU50415.1| 16S rRNA methyltransferase B [Staphylococcus massiliensis S46]
Length = 434
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I TS +K GK+ D +S + L GD +LD C+APG K C I + + +G V
Sbjct: 218 IMTSGLFKAGKVSIQDKSSMFVANVLQPETGDAILDTCSAPGGKACHIGEKLNQTGHVLA 277
Query: 141 VDVARHRLAACRTLLQKYALGD 162
DV H++ ++K L +
Sbjct: 278 SDVHAHKMKLIEHNVKKLGLKN 299
>gi|419653384|ref|ZP_14184359.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-872]
gi|419680683|ref|ZP_14209539.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
140-16]
gi|419686905|ref|ZP_14215324.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1798]
gi|419692400|ref|ZP_14220489.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1928]
gi|380632632|gb|EIB50695.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
2008-872]
gi|380659861|gb|EIB75822.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
140-16]
gi|380663323|gb|EIB78971.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1798]
gi|380669809|gb|EIB85079.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1928]
Length = 292
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNI 108
+EE+E E + K ++ + L D I +SM A+ + Y + +S L +
Sbjct: 38 IEELEKEFLKQNLKFKKINAYCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEV 97
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 98 KAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVFM 155
Query: 169 ADGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 156 KDGKNIGNLCPLKFDKILLD 175
>gi|452974522|gb|EME74342.1| 16S rRNA methyltransferase B [Bacillus sonorensis L12]
Length = 450
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IATS +K+G + D +S AL G+ VLD CAAPG K I +++ ++G V
Sbjct: 222 IATSPFFKEGDVTIQDESSMLVARALGPKPGETVLDACAAPGGKSTHIGELLENTGKVVS 281
Query: 141 VDVARHRL 148
+D+ RH++
Sbjct: 282 LDLHRHKV 289
>gi|205355486|ref|ZP_03222257.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
CG8421]
gi|205346720|gb|EDZ33352.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
CG8421]
Length = 279
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNI 108
+EE+E E + K ++ + L D I +SM A+ + Y + +S L +
Sbjct: 25 IEELEKEFLKQKLKFKKINAYCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEV 84
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 85 KAGQRVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVFM 142
Query: 169 ADGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 143 KDGKNIGNLCPLKFDKILLD 162
>gi|148544395|ref|YP_001271765.1| sun protein [Lactobacillus reuteri DSM 20016]
gi|184153759|ref|YP_001842100.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
gi|227363180|ref|ZP_03847314.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
MM2-3]
gi|325682715|ref|ZP_08162231.1| RNA methyltransferase Sun [Lactobacillus reuteri MM4-1A]
gi|148531429|gb|ABQ83428.1| sun protein [Lactobacillus reuteri DSM 20016]
gi|183225103|dbj|BAG25620.1| rRNA methylase [Lactobacillus reuteri JCM 1112]
gi|227071786|gb|EEI10075.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
MM2-3]
gi|324977065|gb|EGC14016.1| RNA methyltransferase Sun [Lactobacillus reuteri MM4-1A]
Length = 449
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDS-GSV 138
+I +S +K G+I D ++ AV +++I GD VLD CAAPG K I + + D G V
Sbjct: 224 EIISSDLFKNGEITIQDESAMLAVESMHIEPGDKVLDACAAPGGKTVQIAETLADEDGHV 283
Query: 139 TGVDVARHRL 148
+D+ +H++
Sbjct: 284 DALDIHQHKV 293
>gi|415746274|ref|ZP_11475429.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
327]
gi|315931834|gb|EFV10789.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
327]
Length = 279
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNI 108
+EE+E E + K ++ + L D I +SM A+ + Y + +S L +
Sbjct: 25 IEELEKEFLKQKLKFKKINAYCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEV 84
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 85 KAGQRVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVFM 142
Query: 169 ADGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 143 KDGKNIGNLCPLKFDKILLD 162
>gi|218562286|ref|YP_002344065.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
NCTC 11168 = ATCC 700819]
gi|403055409|ref|YP_006632814.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
NCTC 11168-BN148]
gi|112359992|emb|CAL34781.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
NCTC 11168 = ATCC 700819]
gi|401781061|emb|CCK66758.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
NCTC 11168-BN148]
Length = 279
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 52 LEEIEAEL---KCKLEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAASGAAVSALN 107
+EE+E E K +K+ + D I +SM A+ + Y + +S L
Sbjct: 25 IEELEKEFLKQNLKFKKINVYCYLFD-AKDKAILSSMKAFNEAHFYIQNYSSYLCALNLE 83
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167
+ AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F
Sbjct: 84 VKAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVF 141
Query: 168 VADGTTF-SLAPL---RLLLD 184
+ DG +L PL ++LLD
Sbjct: 142 MKDGKNIGNLCPLKFDKILLD 162
>gi|358466382|ref|ZP_09176212.1| hypothetical protein HMPREF9093_00682 [Fusobacterium sp. oral taxon
370 str. F0437]
gi|357069132|gb|EHI79080.1| hypothetical protein HMPREF9093_00682 [Fusobacterium sp. oral taxon
370 str. F0437]
Length = 434
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K+G+I DA+S A L D VLD+CAAPG K ++ + + + G +
Sbjct: 211 IINSKEFKEGRIIAQDASSYLAAKNLGAKPNDLVLDICAAPGGKTAVLAEEMENKGEIIA 270
Query: 141 VDVARHR 147
+D+ +H+
Sbjct: 271 IDIHQHK 277
>gi|121613038|ref|YP_001000337.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
81-176]
gi|121504215|gb|EAQ72967.2| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
81-176]
Length = 279
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNI 108
+EE+E E + K ++ + L D I +SM A+ + Y + +S L +
Sbjct: 25 IEELEKEFLKQNLKFKKINAYCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEV 84
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 85 KAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVFM 142
Query: 169 ADGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 143 KDGKNIGNLCPLKFDKILLD 162
>gi|14590913|ref|NP_142986.1| fmu protein [Pyrococcus horikoshii OT3]
gi|3257494|dbj|BAA30177.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3]
Length = 450
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y++G D AS LN G+ VLDL AAPG+K ++ + G + VD +
Sbjct: 238 YRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENRGEIVAVDYSYD 297
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFS 175
RL R ++K + + +L ADG +++
Sbjct: 298 RLIKMRERMKKLGVKN-VKLVHADGQSYT 325
>gi|432329310|ref|YP_007247454.1| NOL1/NOP2/sun family putative RNA methylase [Aciduliprofundum sp.
MAR08-339]
gi|432136019|gb|AGB05288.1| NOL1/NOP2/sun family putative RNA methylase [Aciduliprofundum sp.
MAR08-339]
Length = 303
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 84/175 (48%), Gaps = 21/175 (12%)
Query: 39 PRYIR---LKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIK-IATSMAYKQGKIYG 94
P +IR LK G E + +E + K E+ L+ + L +K ++ + G Y
Sbjct: 31 PYWIRVNTLKIGEEELIARLEKK-GFKFERFGNLNAYRILSMPVKHPGATIEHSLGYYYV 89
Query: 95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL 154
D +S A V AL+ D +LD+ AAPG+K MI +I+ + G++ D++ R+ +
Sbjct: 90 QDLSSMAPVFALDPRKDDVILDMAAAPGSKTTMIAEIMENEGTIVANDISLSRIKSLGGN 149
Query: 155 LQKYALGD--------RCRLFVADGTTFSLAPLRLLLD-PGSCNSVLQEKDDTFR 200
L++ + + R F GT FS ++LLD P S S +++ FR
Sbjct: 150 LERLGITNTIMTRLDARSEHF---GTKFS----KILLDAPCSGESSVRKNPWGFR 197
>gi|323487165|ref|ZP_08092470.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14163]
gi|323692320|ref|ZP_08106559.1| fmu domain-containing protein [Clostridium symbiosum WAL-14673]
gi|355629664|ref|ZP_09050495.1| hypothetical protein HMPREF1020_04574 [Clostridium sp. 7_3_54FAA]
gi|323399517|gb|EGA91910.1| NOL1/NOP2/sun family protein [Clostridium symbiosum WAL-14163]
gi|323503645|gb|EGB19468.1| fmu domain-containing protein [Clostridium symbiosum WAL-14673]
gi|354819057|gb|EHF03513.1| hypothetical protein HMPREF1020_04574 [Clostridium sp. 7_3_54FAA]
Length = 461
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 72/170 (42%), Gaps = 18/170 (10%)
Query: 44 LKTGNEADLEEIEAELKCKLEKVVWL-SGFYSLPPDIKIATSMAYKQGKIYGIDAASG-A 101
LKTG E E A+ LE + W SGFY P D Y + +Y I S A
Sbjct: 39 LKTGRE----EFLAKTSFMLEPIPWAESGFYYQPQDR--PGRHPYHEAGVYYIQEPSAMA 92
Query: 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG 161
VS L+ G+ VLDLCAAPG K I + G + ++ A R L Q
Sbjct: 93 VVSFLDPQPGEKVLDLCAAPGGKTTQIASRLQGKGFLLSNEI---HPARARILSQNVERM 149
Query: 162 DRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWTS 204
V + + LA R+ +D P S + ++ ++ REW++
Sbjct: 150 GVRNAVVTNEDSGRLAEYFPEFFDRIAVDAPCSGEGMFRKDEEAVREWST 199
>gi|419620735|ref|ZP_14154149.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
51494]
gi|419646404|ref|ZP_14177870.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
53161]
gi|419670382|ref|ZP_14200074.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-14]
gi|419673284|ref|ZP_14202758.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
51037]
gi|419684693|ref|ZP_14213279.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1577]
gi|380598524|gb|EIB18925.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
51494]
gi|380623577|gb|EIB42275.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
53161]
gi|380650762|gb|EIB67377.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1997-14]
gi|380654067|gb|EIB70446.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
51037]
gi|380666717|gb|EIB82242.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1577]
Length = 292
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 52 LEEIEAEL---KCKLEKVVWLSGFYSLPPDIKIATSM-AYKQGKIYGIDAASGAAVSALN 107
+EE+E E K +K+ + D I +SM A+ + Y + +S L
Sbjct: 38 IEELEKEFLKQNLKFKKINVYCYLFD-AKDKAILSSMKAFNEAHFYIQNYSSYLCALNLE 96
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167
+ AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F
Sbjct: 97 VKAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVF 154
Query: 168 VADGTTF-SLAPL---RLLLD 184
+ DG +L PL ++LLD
Sbjct: 155 MKDGKNIGNLCPLKFDKILLD 175
>gi|21552756|gb|AAM62311.1|AF412029_1 Williams-Beuren syndrome critical region protein 20 [Mus musculus]
Length = 465
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 84/229 (36%), Gaps = 33/229 (14%)
Query: 20 DFLKENGLDPSVYSAADSTPRYIRLKT--------------------GNEADLEEIEAEL 59
D L+E+ Y PR++R+ T G + LE++ A
Sbjct: 120 DLLQESSRPGHAYQ----VPRFVRVNTLKTRPEDAIDYFKRQGFSYQGRASSLEDLRALK 175
Query: 60 KCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCA 119
L P + Y+ G + D AS L+ G HV+D CA
Sbjct: 176 GQHFLLDPLLPELLVFPAQTDLHEHPLYRAGHLILQDKASCLPAMLLSPPPGSHVIDACA 235
Query: 120 APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL 179
APG K I ++ + G + D RLAA TL+ + + C L D T S +
Sbjct: 236 APGNKTSYIAALLKNQGKIFAFDQDAKRLAAMATLVARAGVSC-CELAEKDFLTVSPSDQ 294
Query: 180 R------LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAA 222
R +LLDP S + + E P KER +A+ + A
Sbjct: 295 RYSQVQYILLDPSCSGSGMLSRQ--LEEHGEGTPSKERLQALAGFQQRA 341
>gi|148241673|ref|YP_001226830.1| ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
RCC307]
gi|147849983|emb|CAK27477.1| Ribosomal RNA small subunit methyltransferase B [Synechococcus sp.
RCC307]
Length = 454
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 8/137 (5%)
Query: 40 RYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAAS 99
R RL++ EA LE + A +L + L+ P + + +G+ D A+
Sbjct: 210 RCNRLRSSREALLENLPAVALAELPDGLTLTSRPGPLPQLA-----GFSEGQWCVQDRAA 264
Query: 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159
L+ G VLD CAAPG K I +++GD G V VDVA RL ++
Sbjct: 265 QRIAPLLDPKPGQRVLDACAAPGGKTTHIAELMGDQGEVVAVDVAPRRLQQVSANAER-- 322
Query: 160 LGDRC-RLFVADGTTFS 175
LG C R AD T +
Sbjct: 323 LGLSCIRTEAADATDLT 339
>gi|269859444|ref|XP_002649447.1| proliferating-cell nucleolar antigen p120 [Enterocytozoon bieneusi
H348]
gi|220067210|gb|EED44677.1| proliferating-cell nucleolar antigen p120 [Enterocytozoon bieneusi
H348]
Length = 311
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 88/194 (45%), Gaps = 11/194 (5%)
Query: 31 VYSAADSTPRYIRLKTGN----EADLEEIEAELKCKLEKVVWLS-GFYSLPPDIKIATSM 85
V+ A+ R I L+ D+ + + K ++EK+ W G + + + +
Sbjct: 28 VFLDANEKKRPIILRVNTMLKRRKDILNLLYQRKVEMEKLEWCEEGIIAFSSAVPLGATP 87
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDH--VLDLCAAPGAKLCMILDIIGDSGSVTGVDV 143
Y G Y I ++ + + LN+ + V+DLCAAPG K I I+ ++G V ++
Sbjct: 88 EYLAG--YYIVQSANSFLPVLNLELNNDLTVVDLCAAPGGKTTHIAAIMNNTGIVYANEI 145
Query: 144 ARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL-RLLLDPGSCNSVLQEKDDTFREW 202
+ R A R+ +Q+ + C + D F++ + R+LLD + + KD + +
Sbjct: 146 CKERTYALRSNIQRMGFTN-CIITNMDAKLFNIGKVDRVLLDAPCSGTGVISKDMSIKTS 204
Query: 203 TSRIPWKERKRAVK 216
S K+ +R K
Sbjct: 205 KSLDEIKKLQREQK 218
>gi|160915468|ref|ZP_02077679.1| hypothetical protein EUBDOL_01476 [Eubacterium dolichum DSM 3991]
gi|158432588|gb|EDP10877.1| ribosomal RNA small subunit methyltransferase B [Eubacterium
dolichum DSM 3991]
Length = 415
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 61/135 (45%), Gaps = 14/135 (10%)
Query: 71 GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
Y L DI S YKQG + D AS ++ + +LD+C+APG K C I +
Sbjct: 200 ALYYLGNDI--IHSNYYKQGLVSIQDEASQLVAQYVDPQPQERILDVCSAPGTKACHIAE 257
Query: 131 IIGDSGSVTGVDVARHRL-----AACRTLLQ--KYALGDRCRLFVADGTTFSLAPLRLLL 183
+GD GS+ D+ HR+ A R LQ + + D L +G F R+L
Sbjct: 258 RMGDKGSIVCGDIHAHRVELIKNGARRLQLQSIQAQVMDATSLKEIEGEMFD----RVLC 313
Query: 184 D-PGSCNSVLQEKDD 197
D P S VL K D
Sbjct: 314 DVPCSGYGVLARKSD 328
>gi|300709045|ref|XP_002996691.1| hypothetical protein NCER_100191 [Nosema ceranae BRL01]
gi|239606011|gb|EEQ83020.1| hypothetical protein NCER_100191 [Nosema ceranae BRL01]
Length = 362
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 29/210 (13%)
Query: 1 MLCT--LDGEISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKT--GNEADLEEIE 56
+LC L G++ E F KEN L + +YIRL T G +D+ ++
Sbjct: 74 ILCNEILIGKVKNKFWKEKFESVKKENELFHVI------KQKYIRLNTVKGVHSDISNLK 127
Query: 57 AELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLD 116
E ++ Y L + + + AYK+GKI + AS L+ ++D
Sbjct: 128 LE-------STFIPNVYKLLEAVDFSKNKAYKEGKIVIQNIASCLPAYILDPLPNSRIID 180
Query: 117 LCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL 176
CAAPG K + +++ ++G V ++V R + K L + + + F +
Sbjct: 181 ACAAPGNKTSHLSNLLKNTGKVYAIEVDSKRFKILNYHVNKLGLKN---VETINKDFFDI 237
Query: 177 APLR------LLLDP---GSCNSVLQEKDD 197
P + +++DP GS EKDD
Sbjct: 238 KPDKYSNIDYIVVDPSCSGSGMHDFYEKDD 267
>gi|440299348|gb|ELP91916.1| hypothetical protein EIN_399460 [Entamoeba invadens IP1]
Length = 521
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 15 PEAFLDFLKENGLDPSVYSAADSTPR--YIRLKT--GNEADLEEIEAELKCKLEKVVWL- 69
P+A +DF++ A+ TPR IR+ T DL + ++ + W
Sbjct: 224 PKAAVDFME-----------ANETPRPTTIRVNTLKSKRRDLAQKLIAKGVNVDMIEWCK 272
Query: 70 SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
SG I I ++ Y G ++S AAV AL + +LD+C+APG K I
Sbjct: 273 SGLVVYESQIPIGATVEYLSGMYILQSSSSWAAVIALAPQPNERILDMCSAPGGKSTHIA 332
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
++ ++G++ DV++ RL A +Q+ +
Sbjct: 333 ALMKNTGTLVANDVSKDRLKAVVGNVQRLGI 363
>gi|404400584|ref|ZP_10992168.1| 16S rRNA methyltransferase B [Pseudomonas fuscovaginae UPB0736]
Length = 436
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAQPQLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L++ LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLLRVRENLER--LGLEAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|268319392|ref|YP_003293048.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus johnsonii
FI9785]
gi|262397767|emb|CAX66781.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus johnsonii
FI9785]
Length = 463
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ +LN+ GD VLDLCAAPG K + ++ D+G + ++++ R
Sbjct: 76 GYVYSQDPSAMYPAVSLNVKPGDKVLDLCAAPGGKSTALASLLDDTGLLVANEISKSRAK 135
Query: 150 ACRTLLQKYA 159
R L+++
Sbjct: 136 DLRENLERWG 145
>gi|336421619|ref|ZP_08601775.1| hypothetical protein HMPREF0993_01152 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336000090|gb|EGN30243.1| hypothetical protein HMPREF0993_01152 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 459
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 8/176 (4%)
Query: 39 PRYIRLKTGNEADLEEIEAELKCKLE--KVVWL-SGFYSLPPDIKIATSMAYKQGKIYGI 95
PRY L+ N A + E E C E + W+ +GFY ++ A Y G Y
Sbjct: 29 PRYYGLRV-NTAKITVEEFERICPFEITPIPWIENGFYYDGENVAPAKHPYYFAGLYYLQ 87
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
+ ++ S L + GD VLD+CAAPG K + + G + D++ R +
Sbjct: 88 EPSAMTPASRLPVEPGDKVLDVCAAPGGKATELGARLKGQGMLVANDISSSRAKGLLKNM 147
Query: 156 QKYALGDRCRLFVADGTTFSLAPL---RLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
+ + +G+ L G P ++L+D P S + ++ + W P
Sbjct: 148 EVFGIGNMLVLSEEPGRLEQYFPEYFDKILIDAPCSGEGMFRKDKKMVKAWEEHGP 203
>gi|294782560|ref|ZP_06747886.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
1_1_41FAA]
gi|294481201|gb|EFG28976.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
1_1_41FAA]
Length = 434
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K GKI DA+S A L + + VLD+CAAPG K ++ + + + G +
Sbjct: 211 IINSKEFKVGKIIAQDASSYLAAKNLGVKPNELVLDICAAPGGKTAVLAEEMENKGEIIA 270
Query: 141 VDVARHR 147
+D+ +H+
Sbjct: 271 IDIHQHK 277
>gi|296331149|ref|ZP_06873623.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674305|ref|YP_003865977.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296151793|gb|EFG92668.1| RNA-binding Sun protein [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305412549|gb|ADM37668.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 447
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 17/128 (13%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++ G++ D +S AL+ G+ VLD CAAPG K I +++ + GSVT
Sbjct: 222 IAGTHFFQNGEVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIGELMENKGSVTS 281
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVAD---------GTTFSLAPL-RLLLD-PGSCN 189
+D+ +H++ L+++ A DR L + D G TF R+L+D P S
Sbjct: 282 LDLHKHKV----KLIKEAA--DRLGLTIIDAKTMDARKAGETFENGQFDRILVDAPCSGF 335
Query: 190 SVLQEKDD 197
V++ K D
Sbjct: 336 GVIRRKPD 343
>gi|255505682|ref|ZP_05347531.3| rRNA methylase [Bryantella formatexigens DSM 14469]
gi|255266515|gb|EET59720.1| NOL1/NOP2/sun family protein [Marvinbryantia formatexigens DSM
14469]
Length = 562
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 4/152 (2%)
Query: 14 LPEAFLDFLKEN-GLDPSVYSAADSTPRY--IRLKTGNEADLEEIEAELKCKLEKVVWLS 70
+P+ FLD +K+ G + A+ PR +R+ TG + +EE E L+K+ W+
Sbjct: 13 IPQEFLDKMKKLLGSQYGAFLASYDQPRQYGLRVNTG-KISVEEFERLAPFHLKKIPWVK 71
Query: 71 GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
Y A Y G Y + ++ S L + GD VLDLCAAPG K +
Sbjct: 72 NGYFYEEQDAPARHPFYYAGLYYLQEPSAMTPASVLPVHPGDRVLDLCAAPGGKATELGA 131
Query: 131 IIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
+ G + D++ R A ++ + + +
Sbjct: 132 KLRGEGLLVANDISASRAKALLKNIEVFGISN 163
>gi|419698436|ref|ZP_14226147.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23211]
gi|380674872|gb|EIB89791.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23211]
Length = 292
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNI 108
+EE+E E + K ++ + L D I +SM A+ + Y + +S L +
Sbjct: 38 IEELEKEFLKQNLKFKKINAYCYLFDAKDKAILSSMKAFNEAYFYIQNYSSYLCALNLEV 97
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 98 KAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVFM 155
Query: 169 ADGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 156 KDGKNIGNLCPLKFDKILLD 175
>gi|419682267|ref|ZP_14211003.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1213]
gi|380661712|gb|EIB77592.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1213]
Length = 292
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNI 108
+EE+E E + K ++ + L D I +SM A+ + Y + +S L +
Sbjct: 38 IEELEKEFLKQNLKFKKINAYCYLFDAKDKAILSSMKAFNEAYFYIQNYSSYLCALNLEV 97
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 98 KAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVFM 155
Query: 169 ADGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 156 KDGKNIGNLCPLKFDKILLD 175
>gi|419648601|ref|ZP_14179936.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 9217]
gi|380626191|gb|EIB44683.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 9217]
Length = 292
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNI 108
+EE+E E + K ++ + L D I +SM A+ + Y + +S L +
Sbjct: 38 IEELEKEFLKQNLKFKKINAYCYLFDAKDKAILSSMKAFNEAYFYIQNYSSYLCALNLEV 97
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 98 KAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVFM 155
Query: 169 ADGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 156 KDGKNIGNLCPLKFDKILLD 175
>gi|121999099|ref|YP_001003886.1| sun protein [Halorhodospira halophila SL1]
gi|121590504|gb|ABM63084.1| 16S rRNA m(5)C-967 methyltransferase [Halorhodospira halophila SL1]
Length = 429
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 22/205 (10%)
Query: 8 EISKLPLPEAFLDFLKENGLD--PSVYSAADSTP----RYIRLKTGNEADLEEI-EAELK 60
E ++ LP LD L+ + P+V A ++ P R+ R + EA L+ + E E+
Sbjct: 134 EAARYALPPWLLDHLRRAWPEDWPAVAEAGNAHPPMTLRFDRNRISREACLQSLAEQEIP 193
Query: 61 CKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
+V + P + +A + +G + D A+ A L+ GD VLD CAA
Sbjct: 194 AHPGEVAPSAATLHAP--VPVARLPGFAEGWLSVQDEAAQLAAPLLDPQPGDRVLDACAA 251
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA-------DGTT 173
PG K +L+ + +VT +D + RL R L + +C A DG
Sbjct: 252 PGGKTLHLLEHT-PTAAVTALDRSSRRLRQVRDNLARGGYEAQCLAADAADPEAWWDGEP 310
Query: 174 FSLAPLRLLLD-PGSCNSVLQEKDD 197
F R+LLD P + + V++ D
Sbjct: 311 FQ----RILLDAPCTGSGVIRRHPD 331
>gi|418638159|ref|ZP_13200462.1| NusB family protein [Staphylococcus aureus subsp. aureus IS-3]
gi|418649241|ref|ZP_13211269.1| NusB family protein [Staphylococcus aureus subsp. aureus IS-91]
gi|418654781|ref|ZP_13216677.1| NusB family protein [Staphylococcus aureus subsp. aureus IS-99]
gi|375014606|gb|EHS08287.1| NusB family protein [Staphylococcus aureus subsp. aureus IS-99]
gi|375023383|gb|EHS16846.1| NusB family protein [Staphylococcus aureus subsp. aureus IS-3]
gi|375029614|gb|EHS22939.1| NusB family protein [Staphylococcus aureus subsp. aureus IS-91]
Length = 297
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKY 158
D+ H++ ++ Y
Sbjct: 279 SDIHDHKIDLINFNIKNY 296
>gi|194466505|ref|ZP_03072492.1| sun protein [Lactobacillus reuteri 100-23]
gi|194453541|gb|EDX42438.1| sun protein [Lactobacillus reuteri 100-23]
Length = 449
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDS-GSV 138
+I +S +K G+I D ++ AV +++I GD VLD CAAPG K I + + D G V
Sbjct: 224 EIISSDLFKNGEITIQDESAMLAVESMHIEPGDKVLDACAAPGGKTVQIAEALADEDGHV 283
Query: 139 TGVDVARHRL 148
+D+ +H++
Sbjct: 284 DALDIHQHKV 293
>gi|262089596|gb|ACY24694.1| Sun protein [uncultured organism]
Length = 301
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 16/127 (12%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ T + +G++ D A+ A L ++ G VLD C APG K C +L+ V
Sbjct: 79 VTTLPGFAEGRVSVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEAEPALAGVVA 138
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVA---------DGTTFSLAPLRLLLD-PGSCNS 190
VD+ + RL R LQ+ LG L A DG F R+LLD P S
Sbjct: 139 VDLEQKRLVRVRENLQR--LGLEAELIAADARAVDAWWDGQAFQ----RILLDAPCSATG 192
Query: 191 VLQEKDD 197
V++ D
Sbjct: 193 VIRRHPD 199
>gi|395240837|ref|ZP_10417861.1| NOL1/NOP2/sun family protein [Lactobacillus gigeriorum CRBIP 24.85]
gi|394475619|emb|CCI87838.1| NOL1/NOP2/sun family protein [Lactobacillus gigeriorum CRBIP 24.85]
Length = 465
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 60/122 (49%), Gaps = 10/122 (8%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ + N+ G+ VLDLCAAPG K + + + G + +++ R+
Sbjct: 76 GSVYSQDPSAMFPATLANVQPGEKVLDLCAAPGGKTTKLGESLAGKGLLVANEISATRVK 135
Query: 150 ACRTLLQKYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREW 202
A R L+++ + + V + +F+LA + +L+D P S + ++ +D W
Sbjct: 136 ALRENLERWGIDNAV---VTNNDSFALAKVFPEFFDTILVDAPCSGEGMFRKSEDAVNYW 192
Query: 203 TS 204
+
Sbjct: 193 SQ 194
>gi|417901833|ref|ZP_12545709.1| putative ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus 21266]
gi|418645825|ref|ZP_13207943.1| NusB family protein [Staphylococcus aureus subsp. aureus IS-55]
gi|341845672|gb|EGS86874.1| putative ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus 21266]
gi|375022358|gb|EHS15841.1| NusB family protein [Staphylococcus aureus subsp. aureus IS-55]
Length = 297
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKY 158
D+ H++ ++ Y
Sbjct: 279 SDIHDHKIDLINFNIKNY 296
>gi|331269683|ref|YP_004396175.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum BKT015925]
gi|329126233|gb|AEB76178.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum BKT015925]
Length = 443
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I ++ ++ GKI D ++ +N+ GD VLDLC+APG K I +I+ ++G V
Sbjct: 222 IESNPLFEDGKITVQDESAMLVAPTMNVEQGDLVLDLCSAPGGKTTHISEIMNNTGKVKA 281
Query: 141 VDVARHRLAACR 152
D+ ++L +
Sbjct: 282 FDIHENKLNLVK 293
>gi|293380312|ref|ZP_06626386.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus 214-1]
gi|295693192|ref|YP_003601802.1| sun protein [Lactobacillus crispatus ST1]
gi|290923127|gb|EFE00056.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus 214-1]
gi|295031298|emb|CBL50777.1| SUN protein [Lactobacillus crispatus ST1]
Length = 441
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 11 KLPLPEAFLDFLKEN-GLDP--SVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
K +PE + +L +N GLD SV ++ + P ++ AD E++ A+L+ +
Sbjct: 148 KESVPEWLVQYLIDNWGLDKAKSVLNSINE-PAKNSVRISKLADKEQVFAQLERDNYQPQ 206
Query: 68 W--LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKL 125
W LS + I+ S +++GK+ D A+ V A + +HVLD C+APG K
Sbjct: 207 WSKLSSDDVILSHGGISESDLFEEGKLTIQDEAASLVVEAFDFEQDEHVLDACSAPGGKT 266
Query: 126 CMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR 165
I + I + G VT +D+ +L R Q+ + ++ +
Sbjct: 267 VQIAESIVN-GDVTALDIHDKKLRLVRDNAQRMHVANKVK 305
>gi|385808959|ref|YP_005845355.1| ribosomal RNA small subunit methyltransferase B [Ignavibacterium
album JCM 16511]
gi|383801007|gb|AFH48087.1| Ribosomal RNA small subunit methyltransferase B [Ignavibacterium
album JCM 16511]
Length = 482
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 13/142 (9%)
Query: 72 FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDI 131
F+ L I + +G D ++G A L++ G VLD+CAAPG K + +
Sbjct: 255 FFQLQNLTNITAWEYFAKGYFNIQDESTGLACKLLDVKPGMRVLDMCAAPGGKTAFLAAL 314
Query: 132 IGDSGSVTGVDVARHRLAACRTLLQKYALGDRC-RLFVADGTTFSLAPL-RLLLD-PGSC 188
+ D G + +D RL R ++ LG C R +D + P R+L D P S
Sbjct: 315 MQDKGEIVAIDKFEARLKLLRRNNER--LGLTCVRTVESDALEYEDEPFDRVLADVPCSG 372
Query: 189 NSVLQEKDDTFREWTSRIPWKE 210
L +K D I WK+
Sbjct: 373 TGTLSKKPD--------IKWKK 386
>gi|227878882|ref|ZP_03996787.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus crispatus
JV-V01]
gi|227861516|gb|EEJ69130.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus crispatus
JV-V01]
Length = 427
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 11 KLPLPEAFLDFLKEN-GLDP--SVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
K +PE + +L +N GLD SV ++ + P ++ AD E++ A+L+ +
Sbjct: 134 KESVPEWLVQYLIDNWGLDKAKSVLNSINE-PAKNSVRISKLADKEQVFAQLERDNYQPQ 192
Query: 68 W--LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKL 125
W LS + I+ S +++GK+ D A+ V A + +HVLD C+APG K
Sbjct: 193 WSKLSSDDVILSHGGISESDLFEEGKLTIQDEAASLVVEAFDFEQDEHVLDACSAPGGKT 252
Query: 126 CMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR 165
I + I + G VT +D+ +L R Q+ + ++ +
Sbjct: 253 VQIAESIVN-GDVTALDIHDKKLRLVRDNAQRMHVANKVK 291
>gi|253580147|ref|ZP_04857414.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848666|gb|EES76629.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 450
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
A+ QGKI D +S + GD+V+D+CAAPG K + D +GD G+V D+++
Sbjct: 233 AFIQGKIQVQDVSSMLVAEIADPQKGDYVIDMCAAPGGKSLHVADKMGDYGTVDARDISQ 292
Query: 146 HRL 148
+++
Sbjct: 293 YKV 295
>gi|409095981|ref|ZP_11216005.1| tRNA/RNA cytosine-C5-methylase [Thermococcus zilligii AN1]
Length = 451
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
YKQGK D AS L G+ VLDL AAPG+K ++ + G + VD +
Sbjct: 238 YKQGKFVIQDLASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALMENRGEIVAVDYSYD 297
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTF 174
RL + ++ + + RL ADG +F
Sbjct: 298 RLMRMKEKMKLLGI-ENVRLVHADGQSF 324
>gi|256849782|ref|ZP_05555213.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
gi|262046519|ref|ZP_06019480.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus MV-3A-US]
gi|312984157|ref|ZP_07791503.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus CTV-05]
gi|423318407|ref|ZP_17296284.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus FB049-03]
gi|423322018|ref|ZP_17299889.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus FB077-07]
gi|256713271|gb|EEU28261.1| rRNA methylase [Lactobacillus crispatus MV-1A-US]
gi|260572968|gb|EEX29527.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus MV-3A-US]
gi|310894376|gb|EFQ43452.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus CTV-05]
gi|405591472|gb|EKB64974.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus FB077-07]
gi|405596131|gb|EKB69488.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
crispatus FB049-03]
Length = 453
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 11 KLPLPEAFLDFLKEN-GLDP--SVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
K +PE + +L +N GLD SV ++ + P ++ AD E++ A+L+ +
Sbjct: 160 KESVPEWLVQYLIDNWGLDKAKSVLNSINE-PAKNSVRISKLADKEQVFAQLERDNYQPQ 218
Query: 68 W--LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKL 125
W LS + I+ S +++GK+ D A+ V A + +HVLD C+APG K
Sbjct: 219 WSKLSSDDVILSHGGISESDLFEEGKLTIQDEAASLVVEAFDFEQDEHVLDACSAPGGKT 278
Query: 126 CMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR 165
I + I + G VT +D+ +L R Q+ + ++ +
Sbjct: 279 VQIAESIVN-GDVTALDIHDKKLRLVRDNAQRMHVANKVK 317
>gi|212225119|ref|YP_002308355.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
gi|212010076|gb|ACJ17458.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus onnurineus NA1]
Length = 450
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 11/150 (7%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
YKQGK D AS L G+ VLDL AAPG+K ++ + G + VD +
Sbjct: 238 YKQGKFVIQDLASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYD 297
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSLAPL--RLLLDPGSCNSVLQEKDDTFREWTS 204
RL + ++ + + +L ADG +F +++LD C+S T+R++
Sbjct: 298 RLMRMKEKMKLLGIKN-VKLVHADGQSFRDKEKFDKIILD-APCSS-----SGTYRQFPE 350
Query: 205 RIPWKERKRAVKARENAASKAIVRSEHPEL 234
+ W+ ++ +K N + ++R+ H L
Sbjct: 351 -VKWRFDEKKIKRIIN-VQRNMLRNAHENL 378
>gi|336322526|ref|YP_004602493.1| RNA methylase [Flexistipes sinusarabici DSM 4947]
gi|336106107|gb|AEI13925.1| RNA methylase, NOL1/NOP2/sun family [Flexistipes sinusarabici DSM
4947]
Length = 458
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDH----VLDLCAAPGA 123
+ FY L DI ++ ++A+ G IY + +S V L+ + ++ VLD+CAAPG
Sbjct: 62 YFGDFYKLTDDISVSDTIAFLTGGIYIQNPSSIIPVDMLSRALKNNEEPVVLDMCAAPGG 121
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159
K + + I G + +V++ RL + L+KY
Sbjct: 122 KTTGLSEKIARRGLIVANEVSKSRLKSLHFNLEKYG 157
>gi|284165311|ref|YP_003403590.1| RNA methylase [Haloterrigena turkmenica DSM 5511]
gi|284014966|gb|ADB60917.1| RNA methylase, NOL1/NOP2/sun family [Haloterrigena turkmenica DSM
5511]
Length = 302
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 74/189 (39%), Gaps = 43/189 (22%)
Query: 22 LKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKI 81
L+E GL Y AD PR +RL+TG+ W S F+
Sbjct: 45 LEEEGL---AYEQADWNPRVLRLETGSPGS---------------TWTS-FH-------- 77
Query: 82 ATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGV 141
G +G + S L+ G+ V D CAAPG K + ++GD G+V
Sbjct: 78 --------GFTHGQEEVSAVPPVVLDPQPGERVWDSCAAPGGKATQLAALMGDEGTVVAN 129
Query: 142 DVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQE 194
D R++A R ++ + AD +SL R L+D P +C +++
Sbjct: 130 DNNLGRISALRFNAERLG-ATSLAVTNADARNYSLNRFDFDEFDRALVDAPCTCEGTIRK 188
Query: 195 KDDTFREWT 203
DT W+
Sbjct: 189 NPDTLDNWS 197
>gi|431796530|ref|YP_007223434.1| tRNA/rRNA cytosine-C5-methylase [Echinicola vietnamensis DSM 17526]
gi|430787295|gb|AGA77424.1| tRNA/rRNA cytosine-C5-methylase [Echinicola vietnamensis DSM 17526]
Length = 465
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 12/147 (8%)
Query: 66 VVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAAS---GAAVSALNISAGDHVLDLCAAPG 122
V W S + LP K + G Y +A+S G ++ L LDLCAAPG
Sbjct: 58 VPWNSQGFFLPQRPKFTFDPLFHAGAYYVQEASSMFIGHILNHLQAPKEGLYLDLCAAPG 117
Query: 123 AKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLL 182
K ++ D IG+ G + +V + R + + + K+ LG+ V + PL L
Sbjct: 118 GKSSLLADYIGEEGMLVANEVIKTRASILKENMIKWGLGNTV---VTNNDPSHFEPLEGL 174
Query: 183 LD------PGSCNSVLQEKDDTFREWT 203
D P S + ++ EW+
Sbjct: 175 FDVVLVDAPCSGEGMFRKDVQAREEWS 201
>gi|167758121|ref|ZP_02430248.1| hypothetical protein CLOSCI_00459 [Clostridium scindens ATCC 35704]
gi|167664018|gb|EDS08148.1| NOL1/NOP2/sun family protein [Clostridium scindens ATCC 35704]
Length = 479
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 73/176 (41%), Gaps = 8/176 (4%)
Query: 39 PRYIRLKTGNEADLEEIEAELKCKLE--KVVWL-SGFYSLPPDIKIATSMAYKQGKIYGI 95
PRY L+ N A + E E C E + W+ +GFY ++ A Y G Y
Sbjct: 49 PRYYGLRV-NTAKITVEEFERICPFEITPIPWIENGFYYDGENVAPAKHPYYFAGLYYLQ 107
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
+ ++ S L + GD VLD+CAAPG K + + G + D++ R +
Sbjct: 108 EPSAMTPASRLPVEPGDKVLDVCAAPGGKATELGARLKGQGMLVANDISSSRAKGLLKNM 167
Query: 156 QKYALGDRCRLFVADGTTFSLAPL---RLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
+ + +G+ L G P ++L+D P S + ++ + W P
Sbjct: 168 EVFGIGNMLVLSEEPGRLEQYFPEYFDKILIDAPCSGEGMFRKDKKMVKAWEEHGP 223
>gi|384083013|ref|ZP_09994188.1| 16S rRNA methyltransferase B [gamma proteobacterium HIMB30]
Length = 438
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 38/200 (19%)
Query: 15 PEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFY- 73
P+ + L EN + P + T R R KT + ++ +E++ G +
Sbjct: 156 PDYWEQILVENNVHPPM------TLRVNRTKTDRDTYIKSLESQ------------GIHA 197
Query: 74 ---SLPPDIKIATSMA------YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAK 124
S P ++++ MA + +G + D +S A L+ + +LD CAAPG K
Sbjct: 198 ESGSSPDSVRLSEPMAVQSLDGFAEGLVSVQDESSQWASIILDPQPNERILDACAAPGGK 257
Query: 125 LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL- 179
C +L+I +T +DV+ RL+ + L + LG R L AD G+ + P
Sbjct: 258 TCHLLEIA--DAQITALDVSEQRLSRIKENLVR--LGLRADLIAADASHMGSWWDQKPFD 313
Query: 180 RLLLD-PGSCNSVLQEKDDT 198
+LLD P S V++ D
Sbjct: 314 AILLDLPCSATGVIRRNPDV 333
>gi|428771628|ref|YP_007163418.1| sun protein [Cyanobacterium aponinum PCC 10605]
gi|428685907|gb|AFZ55374.1| sun protein [Cyanobacterium aponinum PCC 10605]
Length = 455
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+KQG DA++ LN AG+ ++D CAAPG K I +++GD G V +D
Sbjct: 239 FKQGLFTIQDASAQLVTHLLNPQAGETIIDACAAPGGKTTHIAELMGDKGKVIAIDTYAK 298
Query: 147 RLAACR 152
RL +
Sbjct: 299 RLEKIK 304
>gi|256843396|ref|ZP_05548884.1| ribosomal small subunit methyltransferase B [Lactobacillus
crispatus 125-2-CHN]
gi|256614816|gb|EEU20017.1| ribosomal small subunit methyltransferase B [Lactobacillus
crispatus 125-2-CHN]
Length = 453
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 7/160 (4%)
Query: 11 KLPLPEAFLDFLKEN-GLDP--SVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVV 67
K +PE + +L +N GLD SV ++ + P ++ AD E++ A+L+ +
Sbjct: 160 KESVPEWLVQYLIDNWGLDKAKSVLNSINE-PAKNSVRISKLADKEQVFAQLERDNYQPQ 218
Query: 68 W--LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKL 125
W LS + I+ S +++GK+ D A+ V A + +HVLD C+APG K
Sbjct: 219 WSKLSSDDVILSHGGISESDLFEEGKLTIQDEAASLVVEAFDFEQDEHVLDACSAPGGKT 278
Query: 126 CMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR 165
I + I + G VT +D+ +L R Q+ + ++ +
Sbjct: 279 VQIAESIVN-GDVTALDIHDKKLRLVRDNAQRMHVANKVK 317
>gi|374607065|ref|ZP_09679871.1| 16S rRNA methyltransferase B [Paenibacillus dendritiformis C454]
gi|374387337|gb|EHQ58853.1| 16S rRNA methyltransferase B [Paenibacillus dendritiformis C454]
Length = 445
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 34 AADSTP-----RYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYK 88
AA++ P R RL++ EA L E+ A+ + G + +A S Y+
Sbjct: 158 AANNRPPHGSARVNRLRSTREALLAEMRADGYRAESSALSPDGIVAAGAG-NLAHSAWYR 216
Query: 89 QGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRL 148
G++ D +S V AL G VLD CAAPG K I + +GD G VT D+ H++
Sbjct: 217 DGRLSVQDESSMLVVEALRPEPGMRVLDCCAAPGGKSTHIAERMGDMGEVTANDIHAHKV 276
Query: 149 A 149
A
Sbjct: 277 A 277
>gi|221481961|gb|EEE20327.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 825
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Query: 265 YDKVLVDAECTHDGSIKHIQKF-ENWGWTTLQRRV 298
+DKVLVD ECTHDGS++H+QKF W W ++++
Sbjct: 517 FDKVLVDVECTHDGSLRHMQKFGRQWRWDDFRKKM 551
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 72 FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDI 131
++LPP ++ G I+ +DAAS AA +AL GD V DLC APG KL ++ +
Sbjct: 216 IFALPPHASPRNCTPFRLGLIHPLDAASAAAAAALRPEPGDIVCDLCCAPGNKLLLLANA 275
Query: 132 I 132
+
Sbjct: 276 V 276
>gi|420141071|ref|ZP_14648786.1| hypothetical protein PACIG1_4302, partial [Pseudomonas aeruginosa
CIG1]
gi|403246174|gb|EJY59915.1| hypothetical protein PACIG1_4302, partial [Pseudomonas aeruginosa
CIG1]
Length = 166
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ D A+ A L + G VLD C APG K C +L+ + V VD+
Sbjct: 6 FAEGRVSVQDEAAQLAAEQLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEES 65
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R LQ+ LG + L AD G + P R+LLD P S V++ D
Sbjct: 66 RLVRVRENLQR--LGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPD 120
>gi|417896136|ref|ZP_12540103.1| putative ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus 21235]
gi|341841037|gb|EGS82509.1| putative ribosomal RNA small subunit methyltransferase B
[Staphylococcus aureus subsp. aureus 21235]
Length = 297
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ DHVLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDHVLDACSAPGGKACHIAEVLMPEGKVDA 278
Query: 141 VDVARHRLAACRTLLQKY 158
D+ H++ ++ Y
Sbjct: 279 SDIHDHKIDLINFNIKNY 296
>gi|221505038|gb|EEE30692.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 825
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Query: 265 YDKVLVDAECTHDGSIKHIQKF-ENWGWTTLQRRV 298
+DKVLVD ECTHDGS++H+QKF W W ++++
Sbjct: 517 FDKVLVDVECTHDGSLRHMQKFGRQWRWDDFRKKM 551
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 72 FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDI 131
++LPP ++ G I+ +DAAS AA +AL GD V DLC APG KL ++ +
Sbjct: 216 IFALPPHASPRNCTPFRLGLIHPLDAASAAAAAALRPEPGDIVCDLCCAPGNKLLLLANA 275
Query: 132 I 132
+
Sbjct: 276 V 276
>gi|237837027|ref|XP_002367811.1| hypothetical protein TGME49_006300 [Toxoplasma gondii ME49]
gi|211965475|gb|EEB00671.1| hypothetical protein TGME49_006300 [Toxoplasma gondii ME49]
Length = 825
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Query: 265 YDKVLVDAECTHDGSIKHIQKF-ENWGWTTLQRRV 298
+DKVLVD ECTHDGS++H+QKF W W ++++
Sbjct: 517 FDKVLVDVECTHDGSLRHMQKFGRQWRWDDFRKKM 551
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 72 FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDI 131
++LPP + ++ G I+ +DAAS AA +AL GD V DLC APG KL ++ +
Sbjct: 216 IFALPPHVSPRNCTPFRLGLIHPLDAASAAAAAALRPEPGDIVCDLCCAPGNKLLLLANA 275
Query: 132 I 132
+
Sbjct: 276 V 276
>gi|188585963|ref|YP_001917508.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350650|gb|ACB84920.1| sun protein [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 462
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 26 GLDP--SVYSAADSTP----RYIRLKTG-----NEADLEEIEAELKCKLEKVVWLSGFYS 74
GLD S+ +STP R +L T NE ++ I++ L K++ + +
Sbjct: 166 GLDKTISIMDQNNSTPEEAIRVNKLLTSLENLKNELEMTGIQSRLSSKIDDALLVDNLGD 225
Query: 75 LPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD 134
L + + G D S + GD+++DLC+APG+K ++ +I
Sbjct: 226 L------NNNTLFNCGYFQVQDINSMVVSHLCDPQQGDNIIDLCSAPGSKTTHLVQLIDG 279
Query: 135 SGSVTGVDVARHRLA----ACRTL 154
GS+ VD+ HRL ACR L
Sbjct: 280 QGSILAVDIHEHRLKLVKEACRRL 303
>gi|336053902|ref|YP_004562189.1| rRNA methylase [Lactobacillus kefiranofaciens ZW3]
gi|333957279|gb|AEG40087.1| rRNA methylase [Lactobacillus kefiranofaciens ZW3]
Length = 441
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 8/113 (7%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNI-SAGDHVLDLCAAPGAKLCMILDIIGDSGSVT 139
I+ S +KQGK+ D A+ V A N DHVLD C+APG K I + I G V
Sbjct: 222 ISQSDLFKQGKLTIQDEAASLVVEAFNFDQEADHVLDACSAPGGKTVQIAENI--KGDVI 279
Query: 140 GVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVL 192
+D+ +L R ++ + DR + D AP + PG + +L
Sbjct: 280 ALDIHEKKLNLVRENARRMHVEDRVKTKACDARK---AP--EIFKPGEFSKIL 327
>gi|345869608|ref|ZP_08821565.1| sun protein [Thiorhodococcus drewsii AZ1]
gi|343922991|gb|EGV33688.1| sun protein [Thiorhodococcus drewsii AZ1]
Length = 455
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G + DA + A L+ G VLD CAAPG K IL+ +G+ +T +D
Sbjct: 242 FDRGWVSVQDAGAQLAAQLLDAQPGQRVLDACAAPGGKTAAILERVGNQVELTAIDQDPT 301
Query: 147 RLAACRTLLQKYAL 160
RLA+ +TLL + L
Sbjct: 302 RLASVQTLLTRLGL 315
>gi|379012011|ref|YP_005269823.1| ribosomal RNA small subunit methyltransferase B [Acetobacterium
woodii DSM 1030]
gi|375302800|gb|AFA48934.1| ribosomal RNA small subunit methyltransferase B [Acetobacterium
woodii DSM 1030]
Length = 441
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y++G+ D A+ V L+ G VLD+CAAPG K + ++ + G + DV H
Sbjct: 235 YREGQFLIQDQAAMITVERLDPKPGQRVLDMCAAPGGKTTYLSQLMNNEGEIIARDVFPH 294
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTF 174
RL + L++ + L DGT F
Sbjct: 295 RLKLIKQQLRRLGCTN-IILEDQDGTVF 321
>gi|30109258|gb|AAH51209.1| Nsun5 protein, partial [Mus musculus]
Length = 286
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y+ G + D AS L+ G HV+D CAAPG K I ++ + G + D
Sbjct: 24 YRAGHLILQDKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFDQDAK 83
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSCNSVLQEKDDTFR 200
RLAA TL+ + + C L D T S + R +LLDP S + +
Sbjct: 84 RLAAMATLVARAGVSC-CELAEKDFLTVSPSDQRYSQVQYILLDPSCSGSGMLSRQ--LE 140
Query: 201 EWTSRIPWKERKRAVKARENAA 222
E P KER +A+ + A
Sbjct: 141 EHGEGTPSKERLQALAGFQQRA 162
>gi|390459010|ref|XP_002743979.2| PREDICTED: putative methyltransferase NSUN5 isoform 1 [Callithrix
jacchus]
Length = 466
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 81/210 (38%), Gaps = 25/210 (11%)
Query: 19 LDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPD 78
+D+ K G Y S+ +R G L+ + EL + P
Sbjct: 151 VDYFKRKGFS---YQGRASSADDLRALKGKRFLLDPVVPEL-------------LAFPAQ 194
Query: 79 IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSV 138
+ Y+ G + D AS L+ G HV+D CAAPG K + ++ + G +
Sbjct: 195 TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 254
Query: 139 TGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSCNSVL 192
D+ RL++ TLL + + C L D S + R +LLDP S +
Sbjct: 255 FAFDLDAKRLSSMATLLARAGVSC-CELAEDDFLAVSPSDPRYSQVRYILLDPSCSGSGM 313
Query: 193 QEKDDTFREWTSRIPWKERKRAVKARENAA 222
Q + E +R P ER A+ + A
Sbjct: 314 QSRQ--LEEPGARTPSPERLHALAGFQQRA 341
>gi|366053068|ref|ZP_09450790.1| 16S rRNA methyltransferase B [Lactobacillus suebicus KCTC 3549]
Length = 451
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 82 ATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI---LDIIGDSGSV 138
A S ++ G I D ++ AV ++ I+ GD VLD CAAPG K I LD I + G V
Sbjct: 227 AESPLFRDGTITIQDESAMLAVDSMKINPGDQVLDACAAPGGKTIQIAEHLD-INNGGKV 285
Query: 139 TGVDVARHRLAACR 152
T +D+ +H++ +
Sbjct: 286 TALDIHQHKIKLIK 299
>gi|402815959|ref|ZP_10865551.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
alvei DSM 29]
gi|402506999|gb|EJW17522.1| ribosomal RNA small subunit methyltransferase B [Paenibacillus
alvei DSM 29]
Length = 465
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%)
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVT 139
+A S Y+ G++ D +S V AL AG VLD CAAPG K I + +G+ G V
Sbjct: 233 NLALSQWYRNGELSVQDESSMLVVEALRPEAGMRVLDCCAAPGGKTTHIAERMGNKGEVV 292
Query: 140 GVDVARHRLA 149
DV H++A
Sbjct: 293 ANDVHAHKVA 302
>gi|70726699|ref|YP_253613.1| hypothetical protein SH1698 [Staphylococcus haemolyticus JCSC1435]
gi|68447423|dbj|BAE05007.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 435
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K G I D +S + + D +LD C+APG K C I +++ SG V
Sbjct: 219 IIESSNFKNGNISIQDKSSMFVGYLMGVEENDVILDACSAPGGKACHIAELLAPSGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ +H++ + + K L + + F D T
Sbjct: 279 TDIHKHKIGLIKENIVKLQLNN-IKAFDHDAT 309
>gi|392980964|ref|YP_006479552.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392326897|gb|AFM61850.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 428
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 69 LSGFY--SLPPDIKIATSM------AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
+SGF + P +++A+ + + +G + DA++ ++ L G+ +LDLCAA
Sbjct: 196 MSGFTHDAYPDAVRLASPVPVHALPGFDEGWVTVQDASAQGCMTWLEPKNGEQILDLCAA 255
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG--------- 171
PG K IL+ + +V VDV RL+ L++ LG + ++ DG
Sbjct: 256 PGGKTTHILE-VAPQANVMAVDVDEQRLSRVYDNLKR--LGMKAQVKQGDGRKPAEWCGE 312
Query: 172 TTFSLAPLRLLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVK 216
T F R+LLD P S V++ D I W R R +K
Sbjct: 313 TQFD----RILLDAPCSATGVIRRHPD--------IKWLRRDRDIK 346
>gi|335041811|ref|ZP_08534838.1| tRNA and rRNA cytosine-C5-methylase [Methylophaga
aminisulfidivorans MP]
gi|333788425|gb|EGL54307.1| tRNA and rRNA cytosine-C5-methylase [Methylophaga
aminisulfidivorans MP]
Length = 437
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 10/135 (7%)
Query: 15 PEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAE-LKCKLEKVVWLSGFY 73
PE++ D N P + R + K EA L+++E+E + + +
Sbjct: 162 PESWQDITNANNKQPPMML------RVNQQKVSREAYLQQLESEQIAASIIEATDQGILL 215
Query: 74 SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG 133
P D+ +++G + D ++ A + LNI+ G VLD CAAPG K C IL+
Sbjct: 216 DQPCDVYKLP--GFEEGWVSVQDGSAQLATTILNITPGQRVLDACAAPGGKTCHILE-TS 272
Query: 134 DSGSVTGVDVARHRL 148
VT +D++ RL
Sbjct: 273 PENDVTAIDISSDRL 287
>gi|288942527|ref|YP_003444767.1| RNA methylase, NOL1/NOP2/sun family [Allochromatium vinosum DSM
180]
gi|288897899|gb|ADC63735.1| RNA methylase, NOL1/NOP2/sun family [Allochromatium vinosum DSM
180]
Length = 488
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAG 111
L E+ E + + L +LPP + Y G + +A S V+ +++ G
Sbjct: 61 LTELLVEQGLSPQPIQGLPNALNLPPAFRAGQQWWYCVGLAHAQEAVSQLPVTLMDLKPG 120
Query: 112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
VLD+CAAPG K I + + G+V D++ R+ A + L + +
Sbjct: 121 QRVLDMCAAPGGKTAQIAFALDNRGTVVANDISYGRIKALQGNLDRLGV 169
>gi|345563613|gb|EGX46600.1| hypothetical protein AOL_s00097g616 [Arthrobotrys oligospora ATCC
24927]
Length = 602
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 78/183 (42%), Gaps = 7/183 (3%)
Query: 21 FLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIK 80
+++ N L ++ + S + + G+ +D+ + K K L ++ P
Sbjct: 153 WVRVNALQTTLEDSLSSPTFHAFQEVGSVSDMFFFDVVRKTYYRKAEILPNILAIHPSHD 212
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I +S YK GKI A+S L+ G V+D CAAPG K + ++G SG +
Sbjct: 213 ITSSELYKSGKIILQSASSCLPAIMLDPPKGSMVVDGCAAPGNKTTHLAALVGSSGKIFA 272
Query: 141 VDVARHRLAACRTLLQKY-ALGDRCRLFVADGTTF-----SLAPLRLLLDPG-SCNSVLQ 193
V+ R R ++ K A G L D TT + +LLDP S + +LQ
Sbjct: 273 VERDRRRADILEMMITKAGAEGIVTTLKATDFTTIMEGHPAWQASYILLDPSCSGSGILQ 332
Query: 194 EKD 196
D
Sbjct: 333 RVD 335
>gi|123444066|ref|YP_001008036.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|224493291|sp|A1JRZ3.1|RSMB_YERE8 RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|122091027|emb|CAL13910.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 429
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 38/211 (18%)
Query: 11 KLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLS 70
KL P+ + L N P P ++R+ + + +E +E + +E +
Sbjct: 154 KLAYPDQWQQILDANNQKP---------PMWLRVNRLHHSRIEYLELLKQANIEALP--H 202
Query: 71 GFYSLPPDIKIATSMA------YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAK 124
FY P +++ T A ++ G + DA++ V L+ G+ +LDLCAAPG K
Sbjct: 203 DFY--PDAVRLITPCAVSDLPGFELGWVTVQDASAQGCVDLLDPQDGEQILDLCAAPGGK 260
Query: 125 LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT---------FS 175
IL+ V VD+ RL+ + LQ+ L R V DG T F
Sbjct: 261 TTHILE-AAPKVHVLAVDIDEQRLSRVKENLQRLRLHADVR--VGDGRTPDEWCGDQQFD 317
Query: 176 LAPLRLLLD-PGSCNSVLQEKDDTFREWTSR 205
R+LLD P S V++ D +W R
Sbjct: 318 ----RILLDAPCSATGVIRRHPDI--KWLRR 342
>gi|410634870|ref|ZP_11345497.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
lipolytica E3]
gi|410145614|dbj|GAC12702.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
lipolytica E3]
Length = 442
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y+QG D A+ A + LN GD VLD CAAPG K C IL+ + +D+
Sbjct: 232 YQQGMFAVQDGAAQLAAAYLNAQEGDLVLDCCAAPGGKTCHILERQPNLSKCIALDIDDS 291
Query: 147 RLAACRTLLQKYALGDRCRLFVADGT 172
RL R L + L + L AD T
Sbjct: 292 RLDRVRENLSRLNL--KADLVAADAT 315
>gi|11499905|ref|NP_071149.1| fmu and fmv protein [Archaeoglobus fulgidus DSM 4304]
gi|2648195|gb|AAB88932.1| fmu and fmv protein [Archaeoglobus fulgidus DSM 4304]
Length = 437
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 98/222 (44%), Gaps = 26/222 (11%)
Query: 6 DGEISKLPL----PEAF----LDFLKENGLDPSVYSAADSTPRYIR---LKTGNEADLEE 54
+G + +L L PE F ++ L E+G + + + P Y+R LK E+ E
Sbjct: 135 EGRLKELSLTYFHPEWFVKYAIELLGEDGALKLMKANLRNPPTYVRVNELKGSVESVREY 194
Query: 55 IEAE----LKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISA 110
+E + L++V + G+ P + + +GK D AS ALN S
Sbjct: 195 LEKNGVILEETFLDEVFRVKGYEKHPASLDW-----HSEGKYVIQDLASCFVSHALNPSP 249
Query: 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD 170
GD V+DL AAPG K + ++ + G + VD + R+ R+ L++ + + + + D
Sbjct: 250 GDVVIDLAAAPGMKTAHMAMLMQNEGRIVAVDNSPSRVRRMRSKLKQLGVKN-VEIKLGD 308
Query: 171 GTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERK 212
G F + L+D C+S +WT + ERK
Sbjct: 309 GCVFECEADKALVD-APCSSTGNYASQPNVKWT----FDERK 345
>gi|392548176|ref|ZP_10295313.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Pseudoalteromonas
rubra ATCC 29570]
Length = 485
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 85/180 (47%), Gaps = 18/180 (10%)
Query: 40 RYIRLKTGNEADLEEIE---AELKCKLEKVVWL-SGFYSLPP-----DIKIATSMAYKQG 90
R +R+ T + L+E E A+L +E + W G++ P ++ I + + G
Sbjct: 44 RAVRVNT-LKMSLQEFEHQAAQLNWHIEPIPWCEQGYWLTRPAEEEANLPIGNTALHLSG 102
Query: 91 KIYGIDAASGAAVSAL--NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRL 148
IY +A+S AL +++ G+HVLD+ AAPG+K + ++ + G + +++ RL
Sbjct: 103 CIYVQEASSMLPPMALATSLTPGEHVLDMAAAPGSKTSQLAALMENQGILIANELSSSRL 162
Query: 149 AACRTLLQKYALGDRCRLFVADGTTFSLAPL----RLLLD-PGSCNSVLQEKDDTFREWT 203
L++ + + C L DG F +LLD P S +++ D + W+
Sbjct: 163 KTLAATLKRMGVAN-CALSHFDGQVFGDYMYESFDHILLDAPCSGEGTVRKDPDALKNWS 221
>gi|389852328|ref|YP_006354562.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus sp. ST04]
gi|388249634|gb|AFK22487.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus sp. ST04]
Length = 432
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 1/100 (1%)
Query: 75 LPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD 134
L D I Y++G D AS L+ GD VLDL AAPG+K ++ +
Sbjct: 209 LEYDTPITRLEWYRKGYFVIQDLASAYVAHVLSPEPGDRVLDLAAAPGSKTFHAAALMEN 268
Query: 135 SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174
G + VD + RL + +++ + + RL ADG +F
Sbjct: 269 KGEIVAVDYSYDRLMKMKERMKRLGVKN-VRLVHADGQSF 307
>gi|15595215|ref|NP_248707.1| hypothetical protein PA0017 [Pseudomonas aeruginosa PAO1]
gi|386056088|ref|YP_005972610.1| putative tRNA and rRNA cytosine-C5-methylase [Pseudomonas
aeruginosa M18]
gi|418587867|ref|ZP_13151888.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa MPAO1/P1]
gi|418591626|ref|ZP_13155522.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa MPAO1/P2]
gi|421156962|ref|ZP_15616381.1| hypothetical protein PABE173_0014 [Pseudomonas aeruginosa ATCC
25324]
gi|421514623|ref|ZP_15961309.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa PAO579]
gi|46397033|sp|Q9I7A9.1|RSMB_PSEAE RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|9945836|gb|AAG03407.1|AE004441_8 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|347302394|gb|AEO72508.1| putative tRNA and rRNA cytosine-C5-methylase [Pseudomonas
aeruginosa M18]
gi|375041379|gb|EHS34080.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa MPAO1/P1]
gi|375049685|gb|EHS42176.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa MPAO1/P2]
gi|404348351|gb|EJZ74688.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa PAO579]
gi|404551098|gb|EKA59785.1| hypothetical protein PABE173_0014 [Pseudomonas aeruginosa ATCC
25324]
Length = 434
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ D A+ A L + G VLD C APG K C +L+ + V VD+
Sbjct: 220 FAEGRVSVQDEAAQLAAEQLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEES 279
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R LQ+ LG + L AD G + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLQR--LGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|406971176|gb|EKD95321.1| RNA methylase, NOL1/NOP2/sun family [uncultured bacterium]
Length = 321
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 78 DIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGS 137
+IK++ + + G IY +S V +N+ G ++LD+CA+PG+K I + +
Sbjct: 82 EIKLSETEEFNNGLIYIQGLSSMFPVMLMNLEKGQNILDMCASPGSKTSQIAAELNNECF 141
Query: 138 VTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL----------RLLLDPGS 187
+T ++ + R + ++ LG +C V D PL R+LLD
Sbjct: 142 ITAIENNKKRYYILKKNME--TLGVKCVNAVYDNAV--TLPLKYPDLLESFDRVLLDVPC 197
Query: 188 CN--SVLQEKDDTFREWTSRI 206
N SV + + +W S+I
Sbjct: 198 SNEGSVYLQNPKSIEKWNSKI 218
>gi|402850314|ref|ZP_10898521.1| methyltransferase [Rhodovulum sp. PH10]
gi|402499405|gb|EJW11110.1| methyltransferase [Rhodovulum sp. PH10]
Length = 447
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 71/162 (43%), Gaps = 15/162 (9%)
Query: 49 EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNI 108
+AD E A L+ K + +G L P ++ + +G + DAA+ L
Sbjct: 194 KADPEGWAARLRGK----ILPTGTVRLVPHGPVSALPGFPEGGWWVQDAAAAIPARLLGD 249
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
AG V DLCAAPG K + L + G VT VD + RL R L++ AL + F
Sbjct: 250 VAGKAVADLCAAPGGK-TLQLALAG--AEVTAVDRSEGRLGRLRDNLRRVALDAQS--FA 304
Query: 169 ADGTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKE 210
AD T F P +L C+S T R IPW++
Sbjct: 305 ADVTGFEAGPFDAVLLDAPCSST-----GTIRRHPD-IPWRK 340
>gi|420260316|ref|ZP_14762999.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|404512132|gb|EKA25984.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
enterocolitica WA-314]
Length = 429
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 38/211 (18%)
Query: 11 KLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLS 70
KL P+ + L N P P ++R+ + + +E +E + +E +
Sbjct: 154 KLAYPDQWQQVLDANNQKP---------PMWLRVNRLHHSRIEYLELLKQANIEALP--H 202
Query: 71 GFYSLPPDIKIATSMA------YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAK 124
FY P +++ T A ++ G + DA++ V L+ G+ +LDLCAAPG K
Sbjct: 203 DFY--PDAVRLITPCAVSDLPGFELGWVTVQDASAQGCVDLLDPQDGEQILDLCAAPGGK 260
Query: 125 LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT---------FS 175
IL+ V VD+ RL+ + LQ+ L R V DG T F
Sbjct: 261 TTHILE-AAPKVHVLAVDIDEQRLSRVKENLQRLRLHADVR--VGDGRTPDEWCGDQQFD 317
Query: 176 LAPLRLLLD-PGSCNSVLQEKDDTFREWTSR 205
R+LLD P S V++ D +W R
Sbjct: 318 ----RILLDAPCSATGVIRRHPDI--KWLRR 342
>gi|346315319|ref|ZP_08856834.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 2_2_44A]
gi|345904847|gb|EGX74590.1| ribosomal RNA small subunit methyltransferase B
[Erysipelotrichaceae bacterium 2_2_44A]
Length = 415
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 60/135 (44%), Gaps = 14/135 (10%)
Query: 71 GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
Y L DI S YKQG I D S ++ + +LD+C+APG K C I +
Sbjct: 200 ALYYLGNDI--IHSNYYKQGLISIQDEVSQLVAQYVDPQPQERILDVCSAPGTKACHIAE 257
Query: 131 IIGDSGSVTGVDVARHRL-----AACRTLLQ--KYALGDRCRLFVADGTTFSLAPLRLLL 183
+GD GS+ D+ HR+ A R LQ + + D L +G F R+L
Sbjct: 258 RMGDKGSIVCGDIHAHRVELIKNGARRLQLQSIQAQVMDATSLKEIEGEMFD----RVLC 313
Query: 184 D-PGSCNSVLQEKDD 197
D P S VL K D
Sbjct: 314 DVPCSGYGVLARKSD 328
>gi|49088860|gb|AAT51614.1| PA0017, partial [synthetic construct]
Length = 435
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ D A+ A L + G VLD C APG K C +L+ + V VD+
Sbjct: 220 FAEGRVSVQDEAAQLAAEQLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEES 279
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R LQ+ LG + L AD G + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLQR--LGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|373857268|ref|ZP_09600010.1| sun protein [Bacillus sp. 1NLA3E]
gi|372452918|gb|EHP26387.1| sun protein [Bacillus sp. 1NLA3E]
Length = 449
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 38/68 (55%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ATS A+K G D +S AL IS D VLD CAAPG K I + + +G+V
Sbjct: 224 LATSKAFKDGLFTIQDESSMLVAYALGISLNDRVLDACAAPGGKSTHIAERLDHTGAVVS 283
Query: 141 VDVARHRL 148
+D+ H++
Sbjct: 284 LDLHEHKV 291
>gi|350265887|ref|YP_004877194.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|349598774|gb|AEP86562.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. spizizenii TU-B-10]
Length = 447
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 17/128 (13%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++ G++ D +S AL+ G+ VLD CAAPG K I +++ + GSVT
Sbjct: 222 IAGTHFFQTGEVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIGELMENKGSVTS 281
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVAD---------GTTFSLAPL-RLLLD-PGSCN 189
+D+ +H++ L+++ A DR L + D G TF R+L+D P S
Sbjct: 282 LDLHKHKV----KLIKEAA--DRLGLTIIDAKTMDARKAGETFENGQFDRILVDAPCSGF 335
Query: 190 SVLQEKDD 197
V++ K D
Sbjct: 336 GVIRRKPD 343
>gi|389576660|ref|ZP_10166688.1| NOL1/NOP2/sun family putative RNA methylase [Eubacterium
cellulosolvens 6]
gi|389312145|gb|EIM57078.1| NOL1/NOP2/sun family putative RNA methylase [Eubacterium
cellulosolvens 6]
Length = 532
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 68/153 (44%), Gaps = 9/153 (5%)
Query: 12 LPLPEAFLDFLKENGLDPSVYSAADSTP----RYIRLKTGNEADLEEIEAELKCKLEKVV 67
+ LPEAF++ +KE L + ADS R +R+ T + EE E +++V
Sbjct: 1 MNLPEAFVERMKEM-LGEEYRAFADSYNKTRLRGLRVNT-MKISPEEFERIAPFPVKRVP 58
Query: 68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
W+ + D+ A Y G Y + ++ L + GD VLDLCAAPG K
Sbjct: 59 WVRNGFFYDNDVFPAQHPYYAAGVYYLQEPSAMTPADRLPVEKGDRVLDLCAAPGGKATE 118
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
+ + +G + D + R R LL+ L
Sbjct: 119 LAAKLDGTGMLVANDASNSR---TRALLRNLEL 148
>gi|403222963|dbj|BAM41094.1| nucleolar protein [Theileria orientalis strain Shintoku]
Length = 368
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 29/129 (22%)
Query: 51 DLEEIEAELKCKLEKVV------------WLSGFYSLPPDIKIATSMAYKQGKIYGIDAA 98
+L + A KC+ ++V WL D+ + S + + YGIDA+
Sbjct: 44 ELNRVLANKKCRYYRIVDRNYSTEHVSVKWLR-------DVDVFRSHSNVEKACYGIDAS 96
Query: 99 SGAAVSALNIS---AGDH--VLDLCAAPGAKLCMILDIIGD-----SGSVTGVDVARHRL 148
S A V AL ++ D +LD+C APG KL + + V G+D + RL
Sbjct: 97 SAAVVDALRLNRLCGNDQAWILDMCCAPGGKLLATVSCLSKLKGPCKWKVVGLDSVKRRL 156
Query: 149 AACRTLLQK 157
CR++L+K
Sbjct: 157 DVCRSMLRK 165
>gi|335039089|ref|ZP_08532274.1| RNA methylase, NOL1/NOP2/sun family [Caldalkalibacillus thermarum
TA2.A1]
gi|334181016|gb|EGL83596.1| RNA methylase, NOL1/NOP2/sun family [Caldalkalibacillus thermarum
TA2.A1]
Length = 465
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 15/190 (7%)
Query: 26 GLDPSVYSAADSTPRYIRLKTGN-EADLEEIEAELKCKLEKVVWLS-GFYSLPPDIKIAT 83
G + + + PR+ L+ + +EE L LE V W GFY D + A
Sbjct: 16 GNEAQAFFQSYEQPRHYGLRINTLKWTVEEALQALPFHLEPVPWAKEGFYFHEAD-RPAK 74
Query: 84 SMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDV 143
Y G Y + ++ A + + I GD VLDLCAAPG K I + G + D+
Sbjct: 75 HPYYHAGLYYIQEPSAMAPGAMIPIEPGDKVLDLCAAPGGKSTQIAARLKGKGVLVSNDI 134
Query: 144 ARHRLAACRTLLQKYALGDRC-------RLFVADGTTFSLAPLRLLLD-PGSCNSVLQEK 195
+ R+ L+ + + + RL GT F ++++D P S + ++
Sbjct: 135 SAERVKPLVKNLELFGVRNGIVTNETPERLAAVFGTYFD----KIVIDAPCSGEGMFRKN 190
Query: 196 DDTFREWTSR 205
+ + W +
Sbjct: 191 PEMVKSWETH 200
>gi|348568692|ref|XP_003470132.1| PREDICTED: putative methyltransferase NSUN5-like [Cavia porcellus]
Length = 461
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 78/209 (37%), Gaps = 29/209 (13%)
Query: 35 ADSTPRYIRLKT--------------------GNEADLEEIEAELKCKLEKVVWLSGFYS 74
A PR++R+ T G + LEE+ A + L
Sbjct: 131 ASQVPRFVRVNTLKTCPDDVVDYFKRQGFSYQGRASSLEELRALKGKHFALDLLLPELLV 190
Query: 75 LPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD 134
P + Y+ G + D AS L G HV+D CAAPG K + I+ +
Sbjct: 191 FPAQTDLHEHPLYQAGHLILQDKASCLPAMLLAPPPGSHVIDACAAPGNKTSHLAAILKN 250
Query: 135 SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSC 188
G + D+ RLA+ TLL + + C L D S + R +LLDP
Sbjct: 251 QGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDTRYAQVQYILLDPSCS 309
Query: 189 NSVLQEKDDTFREWTSRIPWKERKRAVKA 217
S + + E + P KER A+ A
Sbjct: 310 GSGMLSRQ--LEEPAAEPPSKERLCALSA 336
>gi|291542931|emb|CBL16041.1| NOL1/NOP2/sun family putative RNA methylase [Ruminococcus bromii
L2-63]
Length = 440
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 23/164 (14%)
Query: 59 LKCKLEKVVWL------------SGFYSLPPDIK-IATSMAYKQGKIYGIDAASGAAVSA 105
LKC EK+ L GFY +P D+K I + + G Y + ++ +AV+
Sbjct: 37 LKCLPEKLCLLLDFELKKTPFCDEGFY-IPSDVKSIGNNPLHHAGAFYVQEPSATSAVTM 95
Query: 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD--- 162
L++ D+VLDLCAAPG K I + +G + ++ R R + +++ + +
Sbjct: 96 LDVHEDDYVLDLCAAPGGKSTQIGAKLNGTGLLWSNEIVRSRANILLSNIERMGISNAVV 155
Query: 163 -RCRLFVADGTTFSLAPL--RLLLDPGSCNSVLQEKDDTFREWT 203
CR D L R+L+D + K+D REW+
Sbjct: 156 SNCR---PDELCKRLENRFDRILVDAPCSGEGMFRKNDAEREWS 196
>gi|419960317|ref|ZP_14476359.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
GS1]
gi|388604809|gb|EIM34037.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
GS1]
Length = 420
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 69 LSGFY--SLPPDIKIATSM------AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
+SGF + P +++A+ +++G + DA++ ++ L G+ +LDLCAA
Sbjct: 188 MSGFTHAAYPDAVRLASPAPVHALPGFEEGWVTVQDASAQGCMAWLEPKDGEQILDLCAA 247
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG--------- 171
PG K IL+ + SV VDV RL+ L++ LG + ++ DG
Sbjct: 248 PGGKTTHILE-VAPQASVMAVDVDEQRLSRVYDNLKR--LGMKAQVKQGDGRKPADWCGD 304
Query: 172 TTFSLAPLRLLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVK 216
T F R+LLD P S V++ D I W R R +K
Sbjct: 305 TRFD----RILLDAPCSATGVIRRHPD--------IKWLRRDRDIK 338
>gi|419634606|ref|ZP_14166936.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
55037]
gi|380614244|gb|EIB33679.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
55037]
Length = 292
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 70/140 (50%), Gaps = 9/140 (6%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNI 108
+EE+E E + K ++ + L D I +SM A+ + Y + +S L +
Sbjct: 38 IEELEKEFLKQKLKFKKINAYCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEV 97
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 98 KAGQRVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVIAKVFM 155
Query: 169 ADGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 156 KDGKNIGNLCPLKFDKILLD 175
>gi|228475051|ref|ZP_04059779.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis SK119]
gi|314936621|ref|ZP_07843968.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis subsp. hominis C80]
gi|418620475|ref|ZP_13183279.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis VCU122]
gi|228271036|gb|EEK12424.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis SK119]
gi|313655240|gb|EFS18985.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis subsp. hominis C80]
gi|374822605|gb|EHR86625.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
hominis VCU122]
Length = 435
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K G I D +S +++ D +LD C+APG K C + +++ +G V
Sbjct: 219 VIESRAFKDGLISIQDKSSMLVGYLMDVQKDDTILDACSAPGGKACHMAELLASTGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTT-FSLAPLRLLLD-PGSCNSVLQEK 195
D+ +H++ + ++K L + F D T +S ++L+D P S VL+ K
Sbjct: 279 TDIHKHKIGLIKENIKKLKLKN-VSTFDHDATKPYSELYDKILVDAPCSGLGVLKHK 334
>gi|257125452|ref|YP_003163566.1| Fmu (Sun) domain-containing protein [Leptotrichia buccalis
C-1013-b]
gi|257049391|gb|ACV38575.1| Fmu (Sun) domain protein [Leptotrichia buccalis C-1013-b]
Length = 433
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 4/161 (2%)
Query: 48 NEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALN 107
N+ E+ E LK V++ G + I + YK G + DA+S AV L
Sbjct: 181 NKITSEKFEELLKNIKTDVLFSVGEVYYLSNANIFDTEIYKNGNVVIQDASSYLAVKNLG 240
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD-RCRL 166
+ G+ VLD C+APG K IL + + +T D+ H++ L KY + +L
Sbjct: 241 VKDGETVLDACSAPGGKSLAILQLF-NPKKLTSTDIHEHKVKLLNELKNKYGYSNFEVKL 299
Query: 167 F-VADGTTFSLAPLRLLLD-PGSCNSVLQEKDDTFREWTSR 205
A + ++LLD P S VL++K + E T+
Sbjct: 300 NDAAQIENLNTKFDKILLDMPCSGLGVLRKKPEKIYELTAN 340
>gi|226323830|ref|ZP_03799348.1| hypothetical protein COPCOM_01605 [Coprococcus comes ATCC 27758]
gi|225208014|gb|EEG90368.1| putative ribosomal RNA small subunit methyltransferase B
[Coprococcus comes ATCC 27758]
Length = 357
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 12/154 (7%)
Query: 21 FLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIK 80
F KE + A + IR TG E I+ + L + +SG+ L
Sbjct: 101 FYKERATTIRINGNATTKEELIRELTG-----EGIQVKEHPLLASALLISGYDYL----- 150
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
A A+++GK DAAS I GD++LD+CAAPG K I+ +G V
Sbjct: 151 -AAIPAFREGKFQVQDAASIMVAEQAGIKEGDYILDVCAAPGGKALHAAQILNGTGMVEA 209
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174
D+ ++ R + + + R D T F
Sbjct: 210 RDLTEMKVELIRENISRMGF-ENIRAVQQDATCF 242
>gi|395243947|ref|ZP_10420925.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
hominis CRBIP 24.179]
gi|394483779|emb|CCI81933.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
hominis CRBIP 24.179]
Length = 438
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 71/135 (52%), Gaps = 5/135 (3%)
Query: 33 SAADSTPRYIRLKTGNEADLEEIEAEL-KCKLE-KVVWLSGFYSLPPDIKIATSMAYKQG 90
S + P IR+ T N L+E+E L K K E ++ L+ ++ + +K+G
Sbjct: 172 SGNKAIPVSIRI-TAN-GQLQEVEQALTKEKFEYRLTPLTDHNLFVHPGQVVKTDLFKEG 229
Query: 91 KIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAA 150
KI D+A+ AV A + + + VLD CAAPG K I + + +G+VT +D+ ++L+
Sbjct: 230 KITIQDSAASLAVDAFDFNGDEKVLDACAAPGGKTVQIAEHLI-TGTVTALDIHENKLSL 288
Query: 151 CRTLLQKYALGDRCR 165
+ ++ + ++ +
Sbjct: 289 IKNAAKRLKVSEKVK 303
>gi|410997199|gb|AFV98664.1| hypothetical protein B649_11765 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 314
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
Query: 64 EKVVW--LSGFYSLPPD--IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCA 119
E+V W LSG Y + P+ +++ + A+ G++Y + +S A L + VLDL A
Sbjct: 59 ERVGWEILSGVYRIAPEDKLRLTQTSAFYDGRLYIQNLSSMIAPVLLAPKPEETVLDLAA 118
Query: 120 APGAKLCMILDIIGDSGSVTGVDVARHRL 148
APG K M+ ++ ++G ++ V++ R R
Sbjct: 119 APGGKTLMLAGMMENTGWLSAVELQRERF 147
>gi|332157765|ref|YP_004423044.1| hypothetical protein PNA2_0122 [Pyrococcus sp. NA2]
gi|331033228|gb|AEC51040.1| nucleolar protein [Pyrococcus sp. NA2]
Length = 311
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 42 IRLKT--GNEADLEEIEAELKCKLEKVVWLSG--FYSLPPDIKIATSMAYKQGKIYGIDA 97
IR+ T GN D++ + E K +LE++ W G FY D+ + Y G I +A
Sbjct: 39 IRINTLKGNLKDIKSLLEE-KFELERIPWTKGEGFYINSYDVNFGELIEYSLGLIIPQEA 97
Query: 98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHR 147
+S L+ G+ VLD+ AAPG+K I + + G + D R R
Sbjct: 98 SSMIPPVVLDPKPGELVLDMAAAPGSKTTQIAQYMENEGCIIANDAKRDR 147
>gi|189241014|ref|XP_968918.2| PREDICTED: similar to williams-beuren syndrome critical region
protein [Tribolium castaneum]
Length = 840
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%)
Query: 75 LPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD 134
PP + AYK G I D AS V L+ G +LD+CAAPG K +I +
Sbjct: 279 FPPKTEFYQHAAYKNGSIILQDKASCLPVHILDPQPGTSILDMCAAPGMKTTQCAALIDN 338
Query: 135 SGSVTGVDVARHRLAACRTLLQ 156
G + V++ R +++
Sbjct: 339 IGKIYAVEIGTKRFHTLEKIVE 360
>gi|429505125|ref|YP_007186309.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|429486715|gb|AFZ90639.1| 16S rRNA methyltransferase B [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
Length = 447
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++ G + D +S AL+ G+ VLD CAAPG K I +++ + GS+T
Sbjct: 222 IANTAFFQNGGVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENEGSLTS 281
Query: 141 VDVARHRLAACRTLLQKYAL 160
+D+ RH++ + ++ L
Sbjct: 282 LDLHRHKVKLIKEGAERLGL 301
>gi|319790535|ref|YP_004152168.1| sun protein [Thermovibrio ammonificans HB-1]
gi|317115037|gb|ADU97527.1| sun protein [Thermovibrio ammonificans HB-1]
Length = 445
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 6/103 (5%)
Query: 55 IEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHV 114
+EAE L++++ + G +LP +K+G Y D AS A L G+ +
Sbjct: 202 VEAEPHPFLKEMIRIKGRVNLP------ELPGFKEGLFYIQDPASYLAAYLLQPKPGELI 255
Query: 115 LDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157
LD+ AAPG K I + G+ + VDV R R + L+K
Sbjct: 256 LDVGAAPGGKTTAIASLTGNGAKIVAVDVNRERAELLKENLRK 298
>gi|421153048|ref|ZP_15612610.1| hypothetical protein PABE171_1959 [Pseudomonas aeruginosa ATCC
14886]
gi|404524332|gb|EKA34681.1| hypothetical protein PABE171_1959 [Pseudomonas aeruginosa ATCC
14886]
Length = 434
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ D A+ A L + G VLD C APG K C +L+ + V VD+
Sbjct: 220 FAEGRVSVQDEAAQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEES 279
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R LQ+ LG + L AD G + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLQR--LGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|419823924|ref|ZP_14347457.1| 16S rRNA methyltransferase B [Bacillus atrophaeus C89]
gi|388471961|gb|EIM08751.1| 16S rRNA methyltransferase B [Bacillus atrophaeus C89]
Length = 447
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA S +K G + D +S AL AG+ +LD CAAPG K I + +G+ GSV
Sbjct: 222 IAGSRFFKNGDVSIQDESSMLVARALGPEAGETILDACAAPGGKSTHIAERMGNEGSVLS 281
Query: 141 VDVARHRLAACRTLLQKYAL 160
+D+ H++ + + L
Sbjct: 282 LDLHEHKVKLIKEAANRLGL 301
>gi|311068095|ref|YP_003973018.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus atrophaeus
1942]
gi|310868612|gb|ADP32087.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus atrophaeus
1942]
Length = 447
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA S +K G + D +S AL AG+ +LD CAAPG K I + +G+ GSV
Sbjct: 222 IAGSRFFKNGDVSIQDESSMLVARALGPEAGETILDACAAPGGKSTHIAERMGNEGSVLS 281
Query: 141 VDVARHRLAACRTLLQKYAL 160
+D+ H++ + + L
Sbjct: 282 LDLHEHKVKLIKEAANRLGL 301
>gi|328786980|ref|XP_393743.4| PREDICTED: putative methyltransferase NSUN5-like [Apis mellifera]
Length = 607
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Query: 75 LPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD 134
PPD Y+ G+I D AS LN G VLD+CAAPG K + I+ +
Sbjct: 195 FPPDTVFYDHPGYQNGEIILQDKASCLPSYLLNPEPGSIVLDMCAAPGMKTSHLAAILTN 254
Query: 135 SGSVTGVDVARHRLAA-CRTL 154
+G + V+ HR C+ +
Sbjct: 255 TGKIYAVEKDEHRYKTLCKQI 275
>gi|270013829|gb|EFA10277.1| hypothetical protein TcasGA2_TC012481 [Tribolium castaneum]
Length = 767
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%)
Query: 75 LPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD 134
PP + AYK G I D AS V L+ G +LD+CAAPG K +I +
Sbjct: 192 FPPKTEFYQHAAYKNGSIILQDKASCLPVHILDPQPGTSILDMCAAPGMKTTQCAALIDN 251
Query: 135 SGSVTGVDVARHRLAACRTLLQ 156
G + V++ R +++
Sbjct: 252 IGKIYAVEIGTKRFHTLEKIVE 273
>gi|424943602|ref|ZP_18359365.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa NCMG1179]
gi|346060048|dbj|GAA19931.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa NCMG1179]
Length = 434
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ D A+ A L + G VLD C APG K C +L+ + V VD+
Sbjct: 220 FAEGRVSVQDEAAQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEES 279
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R LQ+ LG + L AD G + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLQR--LGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|288553113|ref|YP_003425048.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus
OF4]
gi|288544273|gb|ADC48156.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus pseudofirmus
OF4]
Length = 448
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVT 139
++ S A+KQG + D +S AL ++G+ V D+CAAPG K I + + + GSV
Sbjct: 221 QVFESKAFKQGYVTAQDESSMLVGRALGANSGERVADVCAAPGGKTTHIAEQMNNEGSVL 280
Query: 140 GVDVARHRLAACR 152
D+ H++ R
Sbjct: 281 AFDLHDHKVKLIR 293
>gi|300797713|ref|NP_001178522.1| NOP2/Sun domain family, member 5 [Rattus norvegicus]
gi|149063048|gb|EDM13371.1| NOL1/NOP2/Sun domain family, member 5 (predicted) [Rattus
norvegicus]
Length = 451
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 61/142 (42%), Gaps = 9/142 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y+ G + D AS L+ G HV+D CAAPG K I ++ + G + D
Sbjct: 201 YRAGHLILQDKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFDQDAK 260
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSCNSVLQEKDDTFR 200
RLAA TLL + + C + D T S + R +LLDP S + +
Sbjct: 261 RLAAMATLLARAGVSC-CEVAEKDFLTVSPSDQRYGQVQYILLDPSCSGSGMLSRQ--LE 317
Query: 201 EWTSRIPWKERKRAVKARENAA 222
E P KER +A+ + A
Sbjct: 318 EHGEGTPSKERLQALAGFQQRA 339
>gi|403378883|ref|ZP_10920940.1| 16S rRNA methyltransferase B [Paenibacillus sp. JC66]
Length = 457
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 16/158 (10%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + Y++G D +S A++ G VLD CAAPG K + +++ D G V G
Sbjct: 232 MADTDGYREGLFTIQDESSMLVGEAVDPRPGMSVLDCCAAPGGKTTHMAELMNDQGMVIG 291
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS-LAPL----RLLLD-PGSCNSVLQE 194
D+ H+ A R Q+ L + AD T S P R+LLD P S V++
Sbjct: 292 CDIHEHKEALIRKQAQRLGLTS-IQTLAADARTLSGRFPAESFDRVLLDAPCSGLGVIRR 350
Query: 195 KDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHP 232
K D + W + VKA ++ ++ + HP
Sbjct: 351 KPD--------LKWAKEPNEVKALSRIQAE-LLEAVHP 379
>gi|169827064|ref|YP_001697222.1| ribosomal RNA small subunit methyltransferase B [Lysinibacillus
sphaericus C3-41]
gi|168991552|gb|ACA39092.1| Ribosomal RNA small subunit methyltransferase B [Lysinibacillus
sphaericus C3-41]
Length = 453
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 82 ATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGV 141
A + A+K+G I D +S + L S G VLD+CAAPG K + +I+ + GS+
Sbjct: 228 ARTNAFKEGHITIQDESSMIPANVLKPSPGMRVLDMCAAPGGKTTHLAEIMKNEGSILAT 287
Query: 142 DVARHRL 148
D+ H+L
Sbjct: 288 DLHPHKL 294
>gi|337288807|ref|YP_004628279.1| RNA methylase, NOL1/NOP2/sun family [Thermodesulfobacterium sp.
OPB45]
gi|334902545|gb|AEH23351.1| RNA methylase, NOL1/NOP2/sun family [Thermodesulfobacterium
geofontis OPF15]
Length = 316
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 17/179 (9%)
Query: 21 FLKENGLDPS----VYSAADSTPRYIRLKT------GNEADLEEIEAELKCKLEKVVWLS 70
F K L P+ ++S P+Y R+ T ++ L EI + EK+ +
Sbjct: 14 FSKYENLIPNYENFLFSLKFPIPQYFRINTLKVPTKEDQEYLLEILRKKGVNFEKIEEIP 73
Query: 71 GFYSL--PPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
FY + +I + Y G I+ + +S V AL+ GD +LD+CAAPG K +I
Sbjct: 74 YFYRVLNNEEISLGNLEEYSLGLIHSMTLSSSLPVIALDPKPGDLILDMCAAPGGKTGLI 133
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRL---FVADGTTFSLAPLRLLLD 184
+ D V D RL A +++ LG C + + + F + ++L+D
Sbjct: 134 AMMTEDKAIVVSNDKRIDRLTALVANIKR--LGITCTITTRYRGEHFPFGIPFNKILVD 190
>gi|398891389|ref|ZP_10644765.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM55]
gi|398187070|gb|EJM74424.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM55]
Length = 436
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPKLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L++ L L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLERLKLS--AELIAADGRDTQTWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|397651760|ref|YP_006492341.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus
COM1]
gi|393189351|gb|AFN04049.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus
COM1]
Length = 433
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
YK+G D AS L+ G+ VLDL AAPG+K ++ + G + VD +
Sbjct: 220 GYKKGYFVIQDLASAYVAHVLSPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSY 279
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTF 174
RL + ++K + + +L ADG ++
Sbjct: 280 ERLVRMKERMKKLGVKN-VKLVYADGQSY 307
>gi|384442963|ref|YP_005659215.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
S3]
gi|424847077|ref|ZP_18271661.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
NW]
gi|315058050|gb|ADT72379.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
S3]
gi|356485674|gb|EHI15666.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
NW]
Length = 292
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNI 108
+EE+E E + K ++ + L D I +SM + + Y + +S L +
Sbjct: 38 IEELEKEFLKQKLKFKKINAYCYLFDAKDKAILSSMKVFNEAHFYIQNYSSYLCALNLEV 97
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 98 KAGQRVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVFM 155
Query: 169 ADGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 156 KDGKNIGNLCPLKFDKILLD 175
>gi|325108338|ref|YP_004269406.1| Fmu (Sun) domain-containing protein [Planctomyces brasiliensis DSM
5305]
gi|324968606|gb|ADY59384.1| Fmu (Sun) domain protein [Planctomyces brasiliensis DSM 5305]
Length = 495
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+ +G++ D + AV LN D VLDLCA PG K + +++ D GS+T DV +
Sbjct: 269 GFTEGEVVVQDLTAMHAVRLLNPYPKDDVLDLCAGPGTKTTQMAELMLDQGSITATDVTQ 328
Query: 146 HRL 148
RL
Sbjct: 329 ARL 331
>gi|295096932|emb|CBK86022.1| 16S rRNA m(5)C-967 methyltransferase [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 420
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 69 LSGFY--SLPPDIKIATSM------AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
+SGF + P +++A+ +++G + DA++ ++ L G+ +LDLCAA
Sbjct: 188 MSGFTHAAYPDAVRLASPALVHALPGFEEGWLTVQDASAQGCMTWLEPKDGEQILDLCAA 247
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG--------- 171
PG K IL+ + SV VDV RL+ L++ LG + ++ DG
Sbjct: 248 PGGKTTHILE-VAPQASVMAVDVDEQRLSRVYDNLKR--LGMKAQVKQGDGRKPADWCGD 304
Query: 172 TTFSLAPLRLLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVK 216
T F R+LLD P S V++ D I W R R +K
Sbjct: 305 TRFD----RILLDAPCSATGVIRRHPD--------IKWLRRDRDIK 338
>gi|358052141|ref|ZP_09146067.1| sun protein [Staphylococcus simiae CCM 7213]
gi|357258369|gb|EHJ08500.1| sun protein [Staphylococcus simiae CCM 7213]
Length = 435
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S + + DH+LD C+APG K C I +++ G V
Sbjct: 219 IINSRSFKDGFVSIQDKSSMFVGHIIGLERHDHILDACSAPGGKACHIAELLMPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTT-FSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ ++K L + + F D T + ++L+D P S VL+ K
Sbjct: 279 TDIHEHKIDLINYNIKKLRLNN-IKAFQHDATKPYQQTYDKVLVDAPCSGLGVLRHK 334
>gi|260888974|ref|ZP_05900237.1| ribosomal RNA small subunit methyltransferase B [Leptotrichia
hofstadii F0254]
gi|260861034|gb|EEX75534.1| ribosomal RNA small subunit methyltransferase B [Leptotrichia
hofstadii F0254]
Length = 433
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 76/165 (46%), Gaps = 21/165 (12%)
Query: 49 EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNI 108
E L+ I+ ++ + +V +LS + I + YK G + DA+S AV L +
Sbjct: 189 EELLKNIKTDILFSVGEVYYLS-------NANIFDTQIYKNGDVVIQDASSYLAVRNLGV 241
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA-------LG 161
G+ VLD C+APG K IL + + ++ D+ H++ L KY L
Sbjct: 242 KDGETVLDACSAPGGKSLAILQLF-NPKNLISTDIHEHKVKLLNELKNKYGYSNFEVKLN 300
Query: 162 DRCRLFVADGTTFSLAPLRLLLD-PGSCNSVLQEKDDTFREWTSR 205
D ++ D T F ++LLD P S VL++K + E T+
Sbjct: 301 DATQIENLD-TMFD----KILLDMPCSGLGVLRKKPEKIYELTAN 340
>gi|224476326|ref|YP_002633932.1| putative NusB_Sun RNA binding protein [Staphylococcus carnosus
subsp. carnosus TM300]
gi|222420933|emb|CAL27747.1| putative NusB_Sun RNA binding protein [Staphylococcus carnosus
subsp. carnosus TM300]
Length = 435
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A S A+K G + D +S L + GD +LD C+APG K C +++ +G V
Sbjct: 218 VAESRAFKDGIVSIQDKSSMFVAQILAPAEGDDILDACSAPGGKACQTAELLDGTGHVDA 277
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ ++K L + D + ++L+D P S VL+ K
Sbjct: 278 TDIHEHKIDLIEHNVRKLRLKNVTAFQHDDTKPYEKMYDKILVDAPCSGLGVLRHK 333
>gi|57236949|ref|YP_178750.1| NOL1/NOP2/sun family protein [Campylobacter jejuni RM1221]
gi|57165753|gb|AAW34532.1| NOL1/NOP2/sun family protein [Campylobacter jejuni RM1221]
Length = 279
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNI 108
+EE+E E + K ++ + L D I +SM + + Y + +S L +
Sbjct: 25 IEELEKEFLKQKLKFKKINAYCYLFDAKDKAILSSMKVFNEAHFYIQNYSSYLCALNLEV 84
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 85 KAGQRVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVFM 142
Query: 169 ADGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 143 KDGKNIGNLCPLKFDKILLD 162
>gi|398997462|ref|ZP_10700287.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM21]
gi|398124104|gb|EJM13627.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM21]
Length = 436
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPQLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|227890088|ref|ZP_04007893.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii ATCC 33200]
gi|227849532|gb|EEJ59618.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii ATCC 33200]
Length = 461
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ +LN+ GD VLDLCAAPG K + ++ D G + ++++ R
Sbjct: 76 GYVYSQDPSAMYPAVSLNVKPGDKVLDLCAAPGGKSTALASLLDDMGLLVANEISKSRAK 135
Query: 150 ACRTLLQKYA 159
R L+++
Sbjct: 136 DLRENLERWG 145
>gi|398310669|ref|ZP_10514143.1| 16S rRNA methyltransferase B [Bacillus mojavensis RO-H-1]
Length = 447
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++ G++ D +S AL+ G+ VLD CAAPG K I +++ + GSVT
Sbjct: 222 IAGTHFFQTGEVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIAELMENKGSVTS 281
Query: 141 VDVARHRLAACRTLLQKYAL 160
+D+ +H++ + ++ L
Sbjct: 282 LDLHKHKVKLIKEASERLGL 301
>gi|296104996|ref|YP_003615142.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295059455|gb|ADF64193.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 438
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 69 LSGFY--SLPPDIKIATSM------AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
+SGF + P +++A+ + + +G + DA++ ++ L G+ +LDLCAA
Sbjct: 206 MSGFAHDAYPDAVRLASPVPVHALPGFDEGWVTVQDASAQGCMTWLEPKNGEQILDLCAA 265
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG--------- 171
PG K IL+ + SV VD+ RL+ L++ LG + ++ DG
Sbjct: 266 PGGKTTHILE-VAPQASVMAVDIDDQRLSRVYDNLKR--LGMKAQVKQGDGRKPTEWCGE 322
Query: 172 TTFSLAPLRLLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVK 216
T F R+LLD P S V++ D I W R R +K
Sbjct: 323 TQFD----RILLDAPCSATGVIRRHPD--------IKWLRRDRDIK 356
>gi|209542805|ref|YP_002275034.1| Fmu (Sun) domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530482|gb|ACI50419.1| Fmu (Sun) domain protein [Gluconacetobacter diazotrophicus PAl 5]
Length = 438
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 85/196 (43%), Gaps = 14/196 (7%)
Query: 19 LDFLKENGLD--PSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEK----VVWLSGF 72
L+ L + LD P ++ A S R + G EA L+ + E+ V+ +G
Sbjct: 149 LEGLDQARLDVPPWLWGAWGSLARPVAEALGQEAPLDLTLRPGLPEAERPPGGVMLPTGT 208
Query: 73 YSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDII 132
LP ++A Y QG + DAA+ L AG+ + DLCAAPG K L +
Sbjct: 209 LRLPAGTRVADLPGYAQGAFWVQDAAAALPARLLAPRAGERIADLCAAPGGKTAQ-LAVA 267
Query: 133 GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL-APL-RLLLD-PGSCN 189
G VT ++ RLA + L + L DR +L D T+ APL +LLD P S
Sbjct: 268 G--AEVTAIEREPGRLARLKENLDRLGLADRVQLVQGDAATWRPDAPLDAVLLDAPCSAT 325
Query: 190 SVLQEKDDTFREWTSR 205
+ D W R
Sbjct: 326 GTARRHPDVL--WIKR 339
>gi|42561755|ref|NP_172143.3| NOL1/NOP2/sun-like protein [Arabidopsis thaliana]
gi|30102680|gb|AAP21258.1| At1g06560 [Arabidopsis thaliana]
gi|110743735|dbj|BAE99704.1| hypothetical protein [Arabidopsis thaliana]
gi|332189884|gb|AEE28005.1| NOL1/NOP2/sun-like protein [Arabidopsis thaliana]
Length = 599
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 103/235 (43%), Gaps = 33/235 (14%)
Query: 89 QGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRL 148
+G+I+ + S AL+ G+ +LD+CAAPG K I ++ D G + D + +++
Sbjct: 275 EGEIFLQNLPSIIVAHALDPQKGERILDMCAAPGGKTTAIAILMNDEGEIVAADRSHNKV 334
Query: 149 AACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN--SVLQEKDDTFREWT-SR 205
+ L + +G C TT L L+ + P + N ++L D++ + S
Sbjct: 335 LVVQNLSAE--MGFTCI------TTCKLDALKSVCLPTTLNESTILINGDNSSSMTSHSE 386
Query: 206 IPWKERKRAVKARENAASKAIVRSEHPELI-------------FYGRRSGIVGLTKEEIY 252
+ E +V +R + A K+ +++ E GR G T+ +
Sbjct: 387 LSSNEEMTSVTSRRSEADKSCEKNDSTEQPNGGDNVSQAYIRKNKGRLKNGRGRTQCQGG 446
Query: 253 QSVCNSEVSSSGYDKVLVDAECTHDG-------SIKHIQKFENWGWTTLQRRVLD 300
++ + + +D+VL+DA C+ G ++ + N GW QR++LD
Sbjct: 447 RAGKSQGFPPNSFDRVLLDAPCSALGLRPRLFAGLETVVSLRNHGW--YQRKMLD 499
>gi|337283536|ref|YP_004623010.1| sun protein (fmu protein) [Pyrococcus yayanosii CH1]
gi|334899470|gb|AEH23738.1| sun protein (fmu protein) [Pyrococcus yayanosii CH1]
Length = 450
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
YK+G D AS L G+ VLDL AAPG+K ++ + G + VD +
Sbjct: 238 YKRGYFVIQDLASAYVAHVLKPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYE 297
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFS 175
RL + +++ + + RL ADG F
Sbjct: 298 RLIKMKERMKRLGVKN-VRLVHADGQNFK 325
>gi|18977637|ref|NP_578994.1| nol1-nop2-sun family nucleolar protein II [Pyrococcus furiosus DSM
3638]
gi|18893359|gb|AAL81389.1| putative nucleolar protein II (nol1-nop2-sun family) [Pyrococcus
furiosus DSM 3638]
Length = 450
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
YK+G D AS L+ G+ VLDL AAPG+K ++ + G + VD +
Sbjct: 237 GYKKGYFVIQDLASAYVAHVLSPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSY 296
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTF 174
RL + ++K + + +L ADG ++
Sbjct: 297 ERLVRMKERMKKLGVKN-VKLVYADGQSY 324
>gi|363895560|ref|ZP_09322555.1| hypothetical protein HMPREF9629_00837 [Eubacteriaceae bacterium
ACC19a]
gi|361957312|gb|EHL10622.1| hypothetical protein HMPREF9629_00837 [Eubacteriaceae bacterium
ACC19a]
Length = 435
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 21 FLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIK 80
F++ N L +Y + K GN+ D+ I+ E +V L F
Sbjct: 186 FIRGNRLKTDIYDLKTNLQ-----KLGNKFDI--IDEE-----NMIVSLKNFKD------ 227
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I+ + YK+G D AS V L+ + + VLD+CAAPG K + +++ + GS+T
Sbjct: 228 ISKNDMYKKGLFSVQDYASMKTVLVLSPKSYEDVLDICAAPGGKSVFMAELMENKGSITS 287
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174
+D++ +L ++ + D + +V D T +
Sbjct: 288 LDISSKKLKLLEEQTKRLGI-DIIKTYVNDATIY 320
>gi|345301136|ref|YP_004830494.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
asburiae LF7a]
gi|345095073|gb|AEN66709.1| Ribosomal RNA small subunit methyltransferase B [Enterobacter
asburiae LF7a]
Length = 420
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 89/210 (42%), Gaps = 59/210 (28%)
Query: 16 EAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSL 75
+A+L LKE+G++ + D+ P +RL+T + ++L
Sbjct: 177 DAWLALLKESGMNGFTH---DAYPDAVRLETP----------------------APVHAL 211
Query: 76 PPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDS 135
P +++G + DA++ ++ L G+ +LDLCAAPG K IL+ +
Sbjct: 212 P---------GFEEGWVTVQDASAQGCMTWLEPQNGEQILDLCAAPGGKTTHILE-VAPQ 261
Query: 136 GSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-P 185
SV VDV RL+ L++ LG + ++ DG T F R+LLD P
Sbjct: 262 ASVLAVDVDEQRLSRVYDNLKR--LGLKAQVKQGDGRKPAEWCGDTQFD----RILLDAP 315
Query: 186 GSCNSVLQEKDDTFREWTSRIPWKERKRAV 215
S V++ D I W R R +
Sbjct: 316 CSATGVIRRHPD--------IKWLRRDRDI 337
>gi|197301683|ref|ZP_03166753.1| hypothetical protein RUMLAC_00409 [Ruminococcus lactaris ATCC
29176]
gi|197299123|gb|EDY33653.1| NOL1/NOP2/sun family protein [Ruminococcus lactaris ATCC 29176]
Length = 470
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 11/203 (5%)
Query: 14 LPEAFLDFLKEN-GLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKC---KLEKVVWL 69
LP+ F + +K G + Y+A PR+ L+ N A + +E LK LE V W+
Sbjct: 13 LPKEFEEKMKTLLGSEYEEYTACYDEPRHYGLRV-NTAKIS-VEDFLKIAPWPLEPVPWI 70
Query: 70 -SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
+GFY I+ + Y G Y + ++ S L + GD VLD+CAAPG K +
Sbjct: 71 ENGFYYDGDHIQPSKHPYYFAGLYYLQEPSAMTPASRLPVEPGDRVLDVCAAPGGKATEL 130
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG---TTFSLAPLRLLLD- 184
+ +G + D++ R L+ + +G+ L G + F ++L+D
Sbjct: 131 GAKLQGTGVLAANDLSSSRAKGLLKNLELFGIGNVLVLSEEPGKLVSYFEGYFDKILIDA 190
Query: 185 PGSCNSVLQEKDDTFREWTSRIP 207
P S + ++ + W P
Sbjct: 191 PCSGEGMFRKDKKMVKAWEEHGP 213
>gi|410931303|ref|XP_003979035.1| PREDICTED: putative methyltransferase NSUN5-like [Takifugu
rubripes]
Length = 434
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 55/141 (39%), Gaps = 21/141 (14%)
Query: 35 ADSTPRYIRLKT--------------------GNEADLEEIEAELKCKLEKVVWLSGFYS 74
AD PRY+R+ T G + ++++ + K + + + L
Sbjct: 129 ADQLPRYVRVNTVKTTVDDVVDYLKRDGLTYLGQASRIDDLTLKEK-EFLRDMHLQELLV 187
Query: 75 LPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD 134
P YK G I D AS LN G HV+D CAAPG K + I+ +
Sbjct: 188 FSPKTDFHDHFLYKAGHIILQDKASCLPAYLLNPPPGSHVIDACAAPGNKSSHLAAIMKN 247
Query: 135 SGSVTGVDVARHRLAACRTLL 155
G + D+ RL TLL
Sbjct: 248 KGRLFAFDLDAKRLTTMSTLL 268
>gi|418316081|ref|ZP_12927525.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21340]
gi|365241752|gb|EHM82487.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
aureus subsp. aureus 21340]
Length = 435
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S ++K G + D +S +N+ D+VLD C+APG K C I +++ G V
Sbjct: 219 IIHSRSFKDGFVSIQDKSSMFVAHIMNVDRHDNVLDACSAPGGKACHIAEVLMPEGQVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + + F D T
Sbjct: 279 SDIHDHKIDLINFNIKKLRLTN-IKAFQHDAT 309
>gi|295425221|ref|ZP_06817924.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
amylolyticus DSM 11664]
gi|295064997|gb|EFG55902.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
amylolyticus DSM 11664]
Length = 447
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA+S +KQGK+ D A+ V A + + VLD C+APG K I + + +G VT
Sbjct: 228 IASSSLFKQGKLTIQDEAASLVVDAFDFKGNEKVLDACSAPGGKTVQIAEHL-QTGEVTA 286
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+D+ +L + ++ + D+ + D
Sbjct: 287 LDIHDKKLRLVQQNTKRMNVADKVKTVAIDA 317
>gi|20094206|ref|NP_614053.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19887231|gb|AAM01983.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 356
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVT 139
K+ + AY++G +Y S AV AL+ G+ V+DLCAAPG K + I G +
Sbjct: 141 KVRETEAYRRGWVYSQGLPSILAVEALSPEPGETVVDLCAAPGGKCSHVAQITGPESKIV 200
Query: 140 GVDVARHRLAACRTLLQKYAL 160
+D + RL L++ +
Sbjct: 201 AIDRSAPRLERMEARLRRLGI 221
>gi|407367487|ref|ZP_11114019.1| 16S rRNA methyltransferase B [Pseudomonas mandelii JR-1]
Length = 436
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPKLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|406878692|gb|EKD27526.1| hypothetical protein ACD_79C00682G0006 [uncultured bacterium]
Length = 298
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 13/145 (8%)
Query: 92 IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAAC 151
Y +D AS V+AL++ G +VLD+CAAPG K ++ + + G + D + R+
Sbjct: 86 FYFMDIASIYPVTALDVKTGHNVLDMCAAPGGKSLILAENLRAEGFLKLNDSSMPRINRL 145
Query: 152 RTLLQKYALGD-----RCRLFVADGTTFSLAPL--RLLLD-PGSCNSVLQEKDDTFREWT 203
+ +L Y D RL A+ L R+LLD P S L K + EW+
Sbjct: 146 KNVLADYIPSDFLKNISIRLNKAETLCLKERELYDRILLDAPCSSERHLLHKPENLNEWS 205
Query: 204 SRIPWKERKRAVKARENAASKAIVR 228
+ R + + R+ A + +R
Sbjct: 206 -----RSRTKMLAQRQYAMLSSAIR 225
>gi|403046860|ref|ZP_10902329.1| tRNA and rRNA cytosine-C5-methylase [Staphylococcus sp. OJ82]
gi|402763556|gb|EJX17649.1| tRNA and rRNA cytosine-C5-methylase [Staphylococcus sp. OJ82]
Length = 437
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K G + D +S + ++ GD VLD C+APG K C I +++ +G +
Sbjct: 221 IIESRMFKDGLVSIQDKSSMFVAELMGLNEGDEVLDACSAPGGKACHIAEVLNGTGHIDA 280
Query: 141 VDVARHRLAACRTLLQKYALGD 162
D+ H++ ++K L +
Sbjct: 281 TDIYEHKIDLIDFNIKKLRLSN 302
>gi|256830872|ref|YP_003159600.1| Fmu (Sun) domain-containing protein [Desulfomicrobium baculatum DSM
4028]
gi|256580048|gb|ACU91184.1| Fmu (Sun) domain protein [Desulfomicrobium baculatum DSM 4028]
Length = 414
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 79 IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSV 138
+ + S+A K G IY D +S AL ++GD VLD CA+PG+K ++ ++G SG V
Sbjct: 48 MPLGRSIAAKFGYIYIQDKSSMLPPLALAPASGDRVLDFCASPGSKTGILSSLVGPSGLV 107
Query: 139 TGVDVARHRLAACRT 153
+ + RLA R
Sbjct: 108 LANEPSPDRLATLRV 122
>gi|14590712|ref|NP_142782.1| fmu protein [Pyrococcus horikoshii OT3]
gi|186972907|pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
gi|3257262|dbj|BAA29945.1| 450aa long hypothetical fmu protein [Pyrococcus horikoshii OT3]
Length = 450
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 83 TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVD 142
TS A+ +GKI + AS A L+ G+ V+DL AAPG K + +++ + G + D
Sbjct: 232 TSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFD 291
Query: 143 VARHRLAACRTLLQKYAL 160
V + R+ + +++ +
Sbjct: 292 VDKMRMKRLKDFVKRMGI 309
>gi|330446010|ref|ZP_08309662.1| ribosomal RNA small subunit methyltransferase F [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
gi|328490201|dbj|GAA04159.1| ribosomal RNA small subunit methyltransferase F [Photobacterium
leiognathi subsp. mandapamensis svers.1.1.]
Length = 476
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 31/214 (14%)
Query: 14 LPEAFLDFLKEN---GLDPSVYSAADSTP--RYIRLKTGNEADLEEIEAELKCK---LEK 65
+P+AF+D +K+ LD + A TP R IR+ T + +E+ A + + L
Sbjct: 7 IPDAFIDLIKQTMPEHLDIDEFIACCKTPLRRSIRVNTL-KISVEDFLARVANRGWTLTP 65
Query: 66 VVWL-SGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCA 119
V W +GF+ D + + + + G Y +A+S V+AL + A D VLD+ +
Sbjct: 66 VPWCDTGFWIEREDEDSVSLGNTAEHMAGLFYIQEASSMMPVTALLKDNDALDCVLDMAS 125
Query: 120 APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA-----DGTTF 174
APG+K I + + G++ ++A R+ + LQ RC ++ A DG F
Sbjct: 126 APGSKTTQIACTMQNQGALVANELAASRIKVLHSNLQ------RCGVYNAALTHFDGCVF 179
Query: 175 -SLAPL---RLLLD-PGSCNSVLQEKDDTFREWT 203
+ AP +LLD P S +++ DD W+
Sbjct: 180 GTWAPEAFDSILLDAPCSGEGAIRKDDDAMANWS 213
>gi|330806740|ref|YP_004351202.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327374848|gb|AEA66198.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 436
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L ++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHILEAEPKLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL + L++ LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVKENLER--LGLEAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|89074302|ref|ZP_01160792.1| putative sun/nucleolar protein family protein [Photobacterium sp.
SKA34]
gi|89050006|gb|EAR55540.1| putative sun/nucleolar protein family protein [Photobacterium sp.
SKA34]
Length = 476
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 141/323 (43%), Gaps = 34/323 (10%)
Query: 11 KLPLPEAFLDFLKEN---GLDPSVYSAADSTP--RYIR---LKTGNEADLEEIEAELKCK 62
+ +P+AF+D +K+ LD + A TP R IR LK E L + A
Sbjct: 4 NIHIPDAFIDLIKQTMPEHLDIDEFIACCKTPLRRSIRVNTLKISVEDFLVRV-ANRGWT 62
Query: 63 LEKVVWL-SGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLD 116
L V W +GF+ D + + + + G Y +A+S V+AL + +A D VLD
Sbjct: 63 LTPVPWCDTGFWIEREDEDTVSLGNTAEHMAGLFYIQEASSMMPVTALLKDNNALDCVLD 122
Query: 117 LCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF-S 175
+ +APG+K I + + G++ ++A R+ + LQ+ + + L DG F +
Sbjct: 123 MASAPGSKTTQIASAMQNRGALVANELAASRIKVLHSNLQRCGVHN-AALTHFDGCVFGT 181
Query: 176 LAPL---RLLLD-PGSCNSVLQEKDDTFREWT----SRIPWKERKRAVKARENAASKAIV 227
AP +LLD P S +++ +D W+ I +R + A + + ++
Sbjct: 182 WAPESFDSILLDAPCSGEGAIRKDEDAMANWSLASIDEIAEVQRNLIISAFQALKTSGVM 241
Query: 228 RSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSS--SGYDKVLVDAECTHDGSIK-HIQ 284
L + KE+ +V +++ G DK L T DG + + Q
Sbjct: 242 VYSTCTL-NQSENQDVCHFLKEKFGDAVEFEPLNTLFDGADKSL-----TEDGFLHVYPQ 295
Query: 285 KFENWGWTTLQRRVLDPERTDSV 307
F++ G+ + R L P TDSV
Sbjct: 296 VFDSEGFFVARIRKLAPVETDSV 318
>gi|392971815|ref|ZP_10337208.1| putative RNA methyltransferase [Staphylococcus equorum subsp.
equorum Mu2]
gi|392510354|emb|CCI60498.1| putative RNA methyltransferase [Staphylococcus equorum subsp.
equorum Mu2]
Length = 437
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K G + D +S + ++ GD VLD C+APG K C I +++ +G +
Sbjct: 221 IIESRMFKDGLVSIQDKSSMFVAELMGLNEGDEVLDACSAPGGKACHIAEVLNGTGHIDA 280
Query: 141 VDVARHRLAACRTLLQKYALGD 162
D+ H++ ++K L +
Sbjct: 281 TDIYEHKIDLIDFNIKKLRLSN 302
>gi|423694585|ref|ZP_17669075.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens Q8r1-96]
gi|388004506|gb|EIK65819.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens Q8r1-96]
Length = 436
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L ++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHILEAEPKLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL + L++ LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVKENLER--LGLEAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|319892211|ref|YP_004149086.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius HKU10-03]
gi|317161907|gb|ADV05450.1| Ribosomal RNA small subunit methyltransferase B [Staphylococcus
pseudintermedius HKU10-03]
Length = 433
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ TS +++G I D +S + + GD VLD C+APG K C I +I+ G+V
Sbjct: 218 VMTSELFQKGLISIQDKSSMFVAEYMELQPGDAVLDSCSAPGGKACHIAEILNGQGTVLA 277
Query: 141 VDVARHRLAACRTLLQKYAL 160
DV H++ ++K L
Sbjct: 278 TDVHAHKIQLIDHNIRKLHL 297
>gi|227544379|ref|ZP_03974428.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
CF48-3A]
gi|338202534|ref|YP_004648679.1| RNA methyltransferase Sun [Lactobacillus reuteri SD2112]
gi|227185642|gb|EEI65713.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus reuteri
CF48-3A]
gi|336447774|gb|AEI56389.1| RNA methyltransferase Sun [Lactobacillus reuteri SD2112]
Length = 449
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD-IIGDSGSV 138
+I +S +K G+I D ++ AV +++I GD VLD CAAPG K I + + + G V
Sbjct: 224 EIISSDLFKNGEITIQDESAMLAVESMHIEPGDKVLDACAAPGGKTVQIAEALTNEDGHV 283
Query: 139 TGVDVARHRL 148
+D+ +H++
Sbjct: 284 DALDIHQHKV 293
>gi|238916962|ref|YP_002930479.1| hypothetical protein EUBELI_01031 [Eubacterium eligens ATCC 27750]
gi|238872322|gb|ACR72032.1| Hypothetical protein EUBELI_01031 [Eubacterium eligens ATCC 27750]
Length = 442
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 4/150 (2%)
Query: 62 KLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
KLE V W+ + D K A Y G Y + ++ + L I GD V D+CAAP
Sbjct: 43 KLEPVPWIENGFYYSEDDKPAKHPYYFAGLYYIQEPSAMTPANVLPIDEGDVVFDMCAAP 102
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF---VADGTTFSLAP 178
G K + + +G + D++ R A ++ + + + C L V + FS
Sbjct: 103 GGKSTELAAKLNKTGLLITNDISNSRAKALLKNVEVFGVPNLCVLNEDPVGIASRFSGFF 162
Query: 179 LRLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
++L+D P S + ++ + + W P
Sbjct: 163 DKVLIDAPCSGEGMFRKDNKLIKAWEKNGP 192
>gi|363891053|ref|ZP_09318336.1| hypothetical protein HMPREF9628_00820 [Eubacteriaceae bacterium
CM5]
gi|361962020|gb|EHL15169.1| hypothetical protein HMPREF9628_00820 [Eubacteriaceae bacterium
CM5]
Length = 436
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 21 FLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIK 80
F++ N L +Y + K GN+ D+ I+ E +V L F
Sbjct: 186 FIRGNRLKTDIYDLKTNLQ-----KLGNKFDI--IDEE-----NMIVSLKNFKD------ 227
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I+ + YK+G D AS V L+ + + VLD+CAAPG K + +++ + GS+T
Sbjct: 228 ISKNDMYKKGLFSVQDYASMKTVLVLSPKSYEDVLDICAAPGGKSVFMAELMENKGSITS 287
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174
+D++ +L ++ + D + +V D T +
Sbjct: 288 LDISSKKLKLLEEQTKRLGI-DIIKTYVNDATIY 320
>gi|449329777|gb|AGE96046.1| nucleolar protein [Encephalitozoon cuniculi]
Length = 370
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 13/205 (6%)
Query: 13 PLPEAFLDFLKEN--------GLDPSVYSAADSTPRYIRLKT--GNEADLEEIEAELKCK 62
PL E + ++L E ++ + + P IR+ T D+ ++ +
Sbjct: 63 PLMETYNEYLLEKICEIFPRKEVEAFIEESEKQRPMTIRINTLLKGRKDVLKLLSGRGVD 122
Query: 63 LEKVVWL-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
L+ + W SG + I + Y G AAS V +++ G V+DLCAAP
Sbjct: 123 LDALSWTDSGCVVFKSSVPIGATPEYLAGYYCLQGAASMLPVLNMDLKEGLTVVDLCAAP 182
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL-R 180
G K I ++ ++G + DV R+A ++ +Q+ + + C + DG ++ + R
Sbjct: 183 GGKTTHIAALMENTGVIYANDVNEERIAGLKSNIQRMGVRN-CIVMNMDGRKVNVGRVDR 241
Query: 181 LLLDPGSCNSVLQEKDDTFREWTSR 205
+LLD + + KD + + +R
Sbjct: 242 VLLDAPCSGTGVISKDPSVKTSRTR 266
>gi|380016032|ref|XP_003691997.1| PREDICTED: putative methyltransferase NSUN5-like [Apis florea]
Length = 553
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
+S PPD Y+ G+I D AS LN G VLD+CAAPG K +
Sbjct: 189 ISEILVFPPDTIFYDHPGYQNGEIILQDKASCLPSYLLNPEPGSIVLDMCAAPGMKTSHL 248
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
++ ++G + V+ HR +TL ++ L +
Sbjct: 249 AALLTNTGKIYAVEKDEHRY---KTLCEQIKLTN 279
>gi|398868368|ref|ZP_10623767.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM78]
gi|398233338|gb|EJN19272.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM78]
Length = 436
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPKLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L++ L L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLERLKLS--AELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|423335551|ref|ZP_17313326.1| rRNA methylase [Lactobacillus reuteri ATCC 53608]
gi|337728781|emb|CCC03900.1| rRNA methylase [Lactobacillus reuteri ATCC 53608]
Length = 449
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDS-GSV 138
+I +S +K G+I D ++ V +++I GD VLD CAAPG K I + + D G V
Sbjct: 224 EIISSDLFKNGEITIQDESAMLVVESMHIEPGDKVLDACAAPGGKTVQIAEALADEDGHV 283
Query: 139 TGVDVARHRL 148
+D+ +H++
Sbjct: 284 DALDIHQHKV 293
>gi|404370888|ref|ZP_10976204.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
7_2_43FAA]
gi|226912989|gb|EEH98190.1| ribosomal RNA small subunit methyltransferase B [Clostridium sp.
7_2_43FAA]
Length = 439
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I + +K+G I D ++ L++ GD VLDLCAAPG K I +++ +SG V
Sbjct: 218 IEDNQLFKEGLITVQDESAMLVAPLLDLKEGDKVLDLCAAPGGKTTHIAELLANSGEVLA 277
Query: 141 VDVARHRLAACRTLLQKYALGD 162
D+ ++L+ ++ L +
Sbjct: 278 FDLHENKLSLIEENAKRLGLNN 299
>gi|401765477|ref|YP_006580484.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
ENHKU01]
gi|400177011|gb|AFP71860.1| 16S rRNA methyltransferase B [Enterobacter cloacae subsp. cloacae
ENHKU01]
Length = 428
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 33/166 (19%)
Query: 69 LSGFY--SLPPDIKIATSM------AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
+SGF + P +++A+ + +G + DA++ ++ L G+ +LDLCAA
Sbjct: 196 MSGFTHDAYPDAVRLASPAPVHALPGFDEGWVTVQDASAQGCMTFLEPKNGEQILDLCAA 255
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG--------- 171
PG K IL+ + SV VDV RL+ L++ LG + ++ DG
Sbjct: 256 PGGKTTHILE-VAPLASVMAVDVDEQRLSRVYDNLKR--LGMKAQVKQGDGRKPAEWCGE 312
Query: 172 TTFSLAPLRLLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVK 216
T F R+LLD P S V++ D I W R R +K
Sbjct: 313 TQFD----RILLDAPCSATGVIRRHPD--------IKWLRRDRDIK 346
>gi|114566754|ref|YP_753908.1| hypothetical protein Swol_1228 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337689|gb|ABI68537.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 456
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++K+G Y + AS A + LN AG+ VLDLC G K + + + + G V
Sbjct: 230 IAETASFKKGYFYIQNEASMLAAAILNPPAGERVLDLCCGVGGKTTHLAEYMNNQGEVLA 289
Query: 141 VDVARHRLAACRTLLQKYALG 161
V+ +L R Q+ LG
Sbjct: 290 VEFYAQKLELLRQNCQRLGLG 310
>gi|378948017|ref|YP_005205505.1| protein RsmB [Pseudomonas fluorescens F113]
gi|359758031|gb|AEV60110.1| RsmB [Pseudomonas fluorescens F113]
Length = 436
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L ++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHILEAEPKLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL + L++ LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVKENLER--LGLEAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|395242503|ref|ZP_10419500.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
pasteurii CRBIP 24.76]
gi|394480235|emb|CCI85740.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
pasteurii CRBIP 24.76]
Length = 440
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+K G I D A+G V A + + VLD C+APG K I + + +G VT +D+ ++
Sbjct: 227 FKNGDITIQDEAAGLVVQAFDFKGDEQVLDACSAPGGKTVQIAEHLT-TGQVTALDIHKN 285
Query: 147 RLAACRTLLQKYALGDRCRLFVADG 171
+L + Q+ + D+ ++ D
Sbjct: 286 KLNLVKKNAQRMKVADKLKVAAIDA 310
>gi|311029974|ref|ZP_07708064.1| sun protein [Bacillus sp. m3-13]
Length = 275
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
E +V L G +A S A+K G + D +S AL + D V D CAAPG
Sbjct: 41 ESIVSLKG--------NMAYSNAFKNGYMTIQDESSMLVARALGVEKDDFVYDCCAAPGG 92
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
K I +++ DSG V D+ H++ + ++ L +
Sbjct: 93 KTTHIAELLKDSGRVISTDLHEHKVKLIKDQAERLQLSN 131
>gi|194752568|ref|XP_001958593.1| GF11004 [Drosophila ananassae]
gi|190625875|gb|EDV41399.1| GF11004 [Drosophila ananassae]
Length = 441
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Query: 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
S V L+ G++VLD+CAAPG K I +++GD G V +D ++ R++ R+ L Y
Sbjct: 216 SIVCVRVLDPQPGENVLDMCAAPGNKTTHIAELMGDQGCVMALDNSKSRVSTMRSKLNNY 275
Query: 159 -----ALGDRCRLFVADGTTFSLAPL------RLLLD 184
+ D + A T+ S+ P R+LLD
Sbjct: 276 RSIQLHVFDSTKAVDALATSISVPPFPCASFDRILLD 312
>gi|429210998|ref|ZP_19202164.1| putative tRNA and rRNA cytosine-C5-methylase [Pseudomonas sp. M1]
gi|428158412|gb|EKX04959.1| putative tRNA and rRNA cytosine-C5-methylase [Pseudomonas sp. M1]
Length = 436
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ D A+ A L ++ G VLD C APG K C +L+ V GVD+
Sbjct: 222 FAEGRVSVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEAEPGLAGVLGVDLEES 281
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTT----FSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R LQ+ L L ADG + P R+LLD P S V++ D
Sbjct: 282 RLVRVRENLQRLRLD--ATLVAADGRDTVAWWDGKPFQRILLDAPCSATGVIRRHPD 336
>gi|85691089|ref|XP_965944.1| nucleolar protein [Encephalitozoon cuniculi GB-M1]
Length = 370
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 13/205 (6%)
Query: 13 PLPEAFLDFLKEN--------GLDPSVYSAADSTPRYIRLKT--GNEADLEEIEAELKCK 62
PL E + ++L E ++ + + P IR+ T D+ ++ +
Sbjct: 63 PLMETYNEYLLEKICEIFPRKEVEAFIEESEKQRPMTIRINTLLKGRKDVLKLLSGRGVD 122
Query: 63 LEKVVWL-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
L+ + W SG + I + Y G AAS V +++ G V+DLCAAP
Sbjct: 123 LDALSWTDSGCVVFKSSVPIGATPEYLAGYYCLQGAASMLPVLNMDLKEGLTVVDLCAAP 182
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL-R 180
G K I ++ ++G + DV R+A ++ +Q+ + + C + DG ++ + R
Sbjct: 183 GGKTTHIAALMENTGVIYANDVNEERIAGLKSNIQRMGVRN-CIVMNMDGRKVNVGRVDR 241
Query: 181 LLLDPGSCNSVLQEKDDTFREWTSR 205
+LLD + + KD + + +R
Sbjct: 242 VLLDAPCSGTGVISKDPSVKTSRTR 266
>gi|283954082|ref|ZP_06371607.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
414]
gi|283794361|gb|EFC33105.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
414]
Length = 292
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 51 DLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISA 110
+LEE + K K+ + + +++ A+ + K Y + +S L + A
Sbjct: 40 ELEEEFLKQGLKFRKINTYCYLFEAKDKVILSSMKAFNEFKFYIQNYSSYLCALNLEVKA 99
Query: 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD 170
G VLD+CAAPG K + + + ++G + ++++ R + L+ Y G ++F+ +
Sbjct: 100 GQSVLDICAAPGGKSINLANFMQNTGYLACNELSKDRFFTLQKNLKNY--GVNAKIFMKN 157
Query: 171 GTTF-SLAPL---RLLLD 184
G +L PL ++LLD
Sbjct: 158 GKNIGNLCPLKFDKILLD 175
>gi|297618702|ref|YP_003706807.1| RNA methylase, NOL1/NOP2/sun family [Methanococcus voltae A3]
gi|297377679|gb|ADI35834.1| RNA methylase, NOL1/NOP2/sun family [Methanococcus voltae A3]
Length = 322
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 4/126 (3%)
Query: 40 RYIRLKTGNEADLEEIEAELKCK---LEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGID 96
+YIR+ T A EE++ L+ K LE F + + + Y G +
Sbjct: 62 KYIRVNTLQIAP-EELKKRLENKKVVLEDTFLDYAFKVVSSPFSVGATPEYLYGYYFMQS 120
Query: 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156
+S V ALN + +LD+CAAPG K I ++ + G + V+V ++R+ + + +
Sbjct: 121 ISSMVPVIALNPQKNERILDMCAAPGGKTTHIAQLLENEGVIFAVEVNKNRIRSLTSNVN 180
Query: 157 KYALGD 162
+ + D
Sbjct: 181 RMGIKD 186
>gi|46581591|ref|YP_012399.1| NOL1/NOP2/sun family protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|387154790|ref|YP_005703726.1| Fmu (Sun) domain-containing protein [Desulfovibrio vulgaris RCH1]
gi|46451014|gb|AAS97659.1| NOL1/NOP2/sun family protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|311235234|gb|ADP88088.1| Fmu (Sun) domain protein [Desulfovibrio vulgaris RCH1]
Length = 431
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVT 139
+ S+A G IY D +S AL +AG VLD+CA+PG+K + ++G++G V
Sbjct: 51 PLGGSLAAFFGLIYIQDRSSMLPPVALAPAAGSAVLDMCASPGSKTGFLAQLVGETGFVL 110
Query: 140 GVDVARHRLAACRTLL 155
G + R RLA R L
Sbjct: 111 GNEPNRSRLATLRQNL 126
>gi|377556855|ref|ZP_09786534.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
gastricus PS3]
gi|376167285|gb|EHS86138.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
gastricus PS3]
Length = 443
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ + A+K+G+I D ++ AV ++++ D VLD CAAPG K I + + +G V
Sbjct: 221 VTETTAFKEGRITIQDESAMLAVESMHLKPDDLVLDACAAPGGKTVQIAENLT-TGKVVA 279
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+D+ H++ Q+ + DR + D
Sbjct: 280 LDIHAHKVKLIEQNAQRMQVADRIQALQLDA 310
>gi|182420429|ref|ZP_02951648.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum 5521]
gi|237668664|ref|ZP_04528648.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum E4 str. BoNT E BL5262]
gi|182375715|gb|EDT73315.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum 5521]
gi|237657012|gb|EEP54568.1| ribosomal RNA small subunit methyltransferase B [Clostridium
butyricum E4 str. BoNT E BL5262]
Length = 438
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I + +K+GKI D ++ L++ G V+DLC+APG K I +I+G++G V
Sbjct: 218 IENNPLFKEGKITVQDESAMLVAPLLDLKEGMTVVDLCSAPGGKTTHIAEILGNTGKVLA 277
Query: 141 VDVARHRLAACRTLLQKYALGDRC-RLFVADGTTFS 175
D+ +L + + C RL + + TTF+
Sbjct: 278 FDLHESKLGLIK---------ENCERLGITNVTTFA 304
>gi|428671760|gb|EKX72675.1| conserved hypothetical protein [Babesia equi]
Length = 380
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 35/170 (20%)
Query: 6 DGEISKLPLPEAFLDFLKENGLDPSVYSAA------DSTPRYIRLKTGNEADLEEIEAEL 59
D E K L +++ G+D + Y S RY R+++G + D I
Sbjct: 26 DIENGKEMLSSKLKSWIEHLGIDVASYEETLSNVINKSKQRYYRVRSGEDKDENSI---- 81
Query: 60 KCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDH------ 113
+ WL D+ I S GID++S A V AL +
Sbjct: 82 ------INWLR-------DVDIYVSSGSIPKSAIGIDSSSAAVVDALKLGRIPEQELDVW 128
Query: 114 VLDLCAAPGAKLCMI---LDIIGDSG---SVTGVDVARHRLAACRTLLQK 157
+LD+C APG KL + L+ D +V G+D+ + RL C++LL+K
Sbjct: 129 ILDMCCAPGGKLLAMISSLEKFSDRNRKWNVVGLDMVKRRLDVCKSLLKK 178
>gi|149194741|ref|ZP_01871836.1| NOL1/NOP2/sun family protein [Caminibacter mediatlanticus TB-2]
gi|149135164|gb|EDM23645.1| NOL1/NOP2/sun family protein [Caminibacter mediatlanticus TB-2]
Length = 298
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 9/138 (6%)
Query: 27 LDPSVYSAADSTPRYIRLKTGNEADLEEIEAELK---CKLEKVVWLSGFYSLPPD--IKI 81
++P + A + ++ADLE I+ ELK ++V W Y+LP + KI
Sbjct: 12 INPKILDALKEKKEFSFRINKHKADLEVID-ELKKEGFNPKRVEWSKYVYTLPIEDRKKI 70
Query: 82 ATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGV 141
S Y Q KIY + +S + LN+ D VLDL AAPG K + ++ + V+ V
Sbjct: 71 TKSNTYTQNKIYIQNLSSIISALNLNVKEEDWVLDLAAAPGGKSLIFSEV---AKKVSAV 127
Query: 142 DVARHRLAACRTLLQKYA 159
+ + R + +++
Sbjct: 128 EPDKKRFFRMKRNFKEHG 145
>gi|296109553|ref|YP_003616502.1| RNA methylase, NOL1/NOP2/sun family [methanocaldococcus infernus
ME]
gi|295434367|gb|ADG13538.1| RNA methylase, NOL1/NOP2/sun family [Methanocaldococcus infernus
ME]
Length = 274
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 44 LKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAV 103
LK A E +E + KLEK F + I + Y G +S
Sbjct: 20 LKISPSALKERLEKK-GVKLEKTFLDYAFRVIESPFSIGATPEYLFGYYMPQSLSSMIPP 78
Query: 104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRT 153
LN S D VLD+CAAPG K + ++G+ G++ V++++ R+ A ++
Sbjct: 79 ITLNPSPKDRVLDMCAAPGGKTTHLAQLMGNEGTILAVEISKERVKALKS 128
>gi|167747172|ref|ZP_02419299.1| hypothetical protein ANACAC_01886 [Anaerostipes caccae DSM 14662]
gi|167654132|gb|EDR98261.1| NOL1/NOP2/sun family protein [Anaerostipes caccae DSM 14662]
Length = 453
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 4/154 (2%)
Query: 12 LPLPEAFLDFLKEN-GLDPSVYSAADSTPRY--IRLKTGNEADLEEIEAELKCKLEKVVW 68
+ LP+ F++ +K G + S Y A P+ IR+ T ++ +EE + + E V W
Sbjct: 1 MELPQLFVEKMKSLLGEEYSDYEACLKRPKQNGIRVNT-SKISVEEFQKIAPFETEPVPW 59
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
+ + P + A Y G Y + ++ A + L + GD VLDLCAAPG K +
Sbjct: 60 TKNGFFVGPKEQPAKHPFYHAGLYYIQEPSAMAPAAFLPVEPGDKVLDLCAAPGGKSTEL 119
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
+ G + D++ R A L+ + + +
Sbjct: 120 GAKLRGEGILVSNDISITRTKALLKNLEMFGISN 153
>gi|443632757|ref|ZP_21116936.1| RNA-binding Sun protein [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443347580|gb|ELS61638.1| RNA-binding Sun protein [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 447
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 17/128 (13%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++ G++ D +S AL+ G+ VLD CAAPG K I +++ + GSVT
Sbjct: 222 IAGTHFFQNGEVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIGELMENKGSVTS 281
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVAD---------GTTFSLAPL-RLLLD-PGSCN 189
+D+ +H++ L+++ A DR L + + G TF R+L+D P S
Sbjct: 282 LDLHKHKV----KLIKEAA--DRLGLTIIEAKTMDARKAGETFENGQFDRILVDAPCSGF 335
Query: 190 SVLQEKDD 197
V++ K D
Sbjct: 336 GVIRRKPD 343
>gi|398862315|ref|ZP_10617925.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM79]
gi|398230962|gb|EJN16966.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM79]
Length = 436
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|334340862|ref|YP_004545842.1| sun protein [Desulfotomaculum ruminis DSM 2154]
gi|334092216|gb|AEG60556.1| sun protein [Desulfotomaculum ruminis DSM 2154]
Length = 453
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++K+G D +S ALN ++G VLD+ +APG K + ++GDSG + VD+
Sbjct: 231 SFKEGLFQVQDESSMLVAHALNPASGAKVLDVASAPGGKTTHVAQLMGDSGEIIAVDIHS 290
Query: 146 HRL 148
H+L
Sbjct: 291 HKL 293
>gi|305663869|ref|YP_003860157.1| Fmu (Sun) domain-containing protein [Ignisphaera aggregans DSM
17230]
gi|304378438|gb|ADM28277.1| Fmu (Sun) domain protein [Ignisphaera aggregans DSM 17230]
Length = 367
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 7/135 (5%)
Query: 44 LKTGNEADLEEIEAELKCKLEKVVWLSGFY---SLPPDIKIATSMAYKQGKIYGI-DAAS 99
L+T E L+++ L +LE V W Y S P I ++ Y +G Y DAAS
Sbjct: 93 LRTSCEELLQQL-YRLNFRLELVSWCHHCYRVISSPKHPSIGSTHQYLKGLYYVYRDAAS 151
Query: 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159
LN + G ++D+CAAPG K I +I D G + D++ RL A + Y
Sbjct: 152 TIPPLILNPTKGSSIIDMCAAPGGKAIHISLLIRDEGFLILNDISIKRLEA--LISNYYR 209
Query: 160 LGDRCRLFVADGTTF 174
+G + + + T
Sbjct: 210 MGFKSYIIINHDATL 224
>gi|73662864|ref|YP_301645.1| tRNA and rRNA cytosine-C5-methylase [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
gi|72495379|dbj|BAE18700.1| putative tRNA and rRNA cytosine-C5-methylase [Staphylococcus
saprophyticus subsp. saprophyticus ATCC 15305]
Length = 436
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K G I D +S + + GD VLD C+APG K C I +I+ +G V
Sbjct: 220 IIESRMFKDGLISIQDKSSMFIGELMALKEGDQVLDACSAPGGKACHIAEILNGTGHVDA 279
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ ++K L + F D T + ++L+D P S VL+ K
Sbjct: 280 TDIHEHKIDLIDFNIRKLRLSN-ISAFEHDATEKYDKVYDKILVDAPCSGLGVLRHK 335
>gi|226325128|ref|ZP_03800646.1| hypothetical protein COPCOM_02920 [Coprococcus comes ATCC 27758]
gi|225206476|gb|EEG88830.1| NOL1/NOP2/sun family protein [Coprococcus comes ATCC 27758]
Length = 473
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 6/175 (3%)
Query: 39 PRYIRLKTGNEA-DLEEIEAELKCKLEKVVWL-SGFYSLPPDIKIATSMAYKQGKIYGID 96
PRY L+ E +E+ ++ + W+ +GFY I A Y G Y +
Sbjct: 41 PRYYGLRVNTEKISVEDFVKICPFEITPIPWIDNGFYYDGEKISPAKHPYYFAGLYYLQE 100
Query: 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156
++ + L + GD VLD+CAAPG K + + + G + D++ R L+
Sbjct: 101 PSAMTPANRLPVEPGDRVLDVCAAPGGKATELGAKLQNEGVLVANDISSSRARGLLKNLE 160
Query: 157 KYALGDRCRLFVADG---TTFSLAPLRLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
+ +G+ + G FS ++L+D P S + ++ R W P
Sbjct: 161 VFGIGNMLVMSEEPGRLERYFSGYFDKILIDAPCSGEGMFRKDKKMVRAWEEHGP 215
>gi|445059863|ref|YP_007385267.1| 16S rRNA methyltransferase B [Staphylococcus warneri SG1]
gi|443425920|gb|AGC90823.1| 16S rRNA methyltransferase B [Staphylococcus warneri SG1]
Length = 435
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S A+K G + D +S ++++ D VLD C+APG K C I +I+ G V
Sbjct: 219 IVNSRAFKDGLVSIQDKSSMFVAHIMDLNRNDSVLDACSAPGGKACHIAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGD 162
D+ H++ ++K L +
Sbjct: 279 TDIHDHKIKLIDFNIRKLRLKN 300
>gi|333370272|ref|ZP_08462285.1| NOL1/NOP2/sun family protein [Desmospora sp. 8437]
gi|332978163|gb|EGK14897.1| NOL1/NOP2/sun family protein [Desmospora sp. 8437]
Length = 459
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 12/178 (6%)
Query: 36 DSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWL-SGFYSLPPDIKIATSMAYKQGKIYG 94
D R +R+ T + + E L +LE V W +GF+ + + + G Y
Sbjct: 29 DPPHRGLRINT-LKLSVAEGRQRLPFRLEPVPWCDTGFFYDHDRDRPGKHVYHAAGLYYI 87
Query: 95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL 154
D ++ A V AL G+ +LDLCAAPG K I + G + ++++ R
Sbjct: 88 QDPSAMAPVEALQPRPGEKILDLCAAPGGKTTQIAAHMKGKGILVANEISKERRKTLVEN 147
Query: 155 LQK------YALGDRCRLFVADGTTFSLAPLRLLLD-PGSCNSVLQEKDDTFREWTSR 205
L++ LG+ R T F+ R+L+D P S + ++ DT W+ R
Sbjct: 148 LERCGVPNALILGEDPRHL---STRFTGWFDRVLIDAPCSGEGMFRKDPDTRERWSHR 202
>gi|154504971|ref|ZP_02041709.1| hypothetical protein RUMGNA_02481 [Ruminococcus gnavus ATCC 29149]
gi|153794854|gb|EDN77274.1| NOL1/NOP2/sun family protein [Ruminococcus gnavus ATCC 29149]
Length = 462
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 80/201 (39%), Gaps = 7/201 (3%)
Query: 14 LPEAFLDFLKEN-GLDPSVYSAADSTPRYIRLKTG-NEADLEEIEAELKCKLEKVVWLS- 70
LP F + +K G + Y PR+ L+ N+ +E+ L V W+S
Sbjct: 5 LPNTFEEKMKHLLGEEYEDYLKCYEEPRHYGLRVNTNKISVEDFLKIAPWPLRPVPWISN 64
Query: 71 GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
GFY I+ A Y G Y + ++ L I GD VLD+CAAPG K +
Sbjct: 65 GFYYDGDQIQPAKHPYYFAGLYYLQEPSAMTPADRLLIEPGDRVLDVCAAPGGKATELGA 124
Query: 131 IIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL---RLLLD-PG 186
+ G + D++ R ++ + +G+ L G P ++L+D P
Sbjct: 125 KLQGKGVLMANDISNSRAKGLLKNIELFGIGNMLVLSEEPGKLTEYFPEYFDKILIDAPC 184
Query: 187 SCNSVLQEKDDTFREWTSRIP 207
S + ++ + W P
Sbjct: 185 SGEGMFRKDKKMVKAWEEHGP 205
>gi|418576403|ref|ZP_13140549.1| putative tRNA and rRNA cytosine-C5-methylase [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
gi|379325465|gb|EHY92597.1| putative tRNA and rRNA cytosine-C5-methylase [Staphylococcus
saprophyticus subsp. saprophyticus KACC 16562]
Length = 437
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K G I D +S + + GD VLD C+APG K C I +I+ +G V
Sbjct: 221 IIESRMFKDGLISIQDKSSMFIGELMALKEGDQVLDACSAPGGKACHIAEILNGTGHVDA 280
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ ++K L + F D T + ++L+D P S VL+ K
Sbjct: 281 TDIHEHKIDLIDFNIRKLRLSN-ISAFEHDATEKYDKVYDKILVDAPCSGLGVLRHK 336
>gi|116492597|ref|YP_804332.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC
25745]
gi|116102747|gb|ABJ67890.1| tRNA and rRNA cytosine-C5-methylase [Pediococcus pentosaceus ATCC
25745]
Length = 444
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I+ + +Y G + D ++ +++ G VLD CAAPG K I +IG++G VTG
Sbjct: 223 ISDTRSYIDGDLTVQDESAMLVAETMHLEKGQKVLDACAAPGGKTTQIAAMIGETGEVTG 282
Query: 141 VDVARHRLAACRTLLQKYAL 160
D+ + R+ + Q+ L
Sbjct: 283 WDIYQKRVQLIQDNAQRMHL 302
>gi|305664185|ref|YP_003860473.1| RNA methylase [Ignisphaera aggregans DSM 17230]
gi|304378754|gb|ADM28593.1| RNA methylase, NOL1/NOP2/sun family [Ignisphaera aggregans DSM
17230]
Length = 455
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 53 EEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGD 112
E I AE+ ++ V+ G Y S Y++GKI D AS A L+ G+
Sbjct: 214 EGINAEIGKYVKTVIKFKGPYDFD------RSSLYREGKIVIQDEASALASILLDPKPGE 267
Query: 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157
V+DLCAAPG K + +++ ++G + D+ + R+ + +L +
Sbjct: 268 VVIDLCAAPGGKTEHMGELMNNTGIIYAFDIDKTRIKRMQEILNR 312
>gi|329114269|ref|ZP_08243031.1| Ribosomal RNA small subunit methyltransferase B [Acetobacter
pomorum DM001]
gi|326696345|gb|EGE48024.1| Ribosomal RNA small subunit methyltransferase B [Acetobacter
pomorum DM001]
Length = 462
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 70/170 (41%), Gaps = 8/170 (4%)
Query: 39 PRYIRLKTGNEADLE-EIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDA 97
PR I +EA L+ + +V +G P ++A Y++G + DA
Sbjct: 199 PRAIAEGISHEAPLDITMRPGATAPEGGIVLPNGSVRYPAGTRVAELAGYEEGAFWVQDA 258
Query: 98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157
A+ LN+ AG+ V DLCAAPG K + V+ ++ +R+A + L +
Sbjct: 259 AATFPARLLNVQAGEKVADLCAAPGGKTA---QLAATGAHVSAIENNPNRMARLKENLAR 315
Query: 158 YALGDRCRLFVADGTTFSLAPL-RLLLD-PGSCNSVLQEKDDTFREWTSR 205
+ L GT APL +LLD P S + D W R
Sbjct: 316 LGFTNVTTLQADAGTWQPDAPLDAILLDAPCSATGTARRHPDVL--WVKR 363
>gi|332163229|ref|YP_004299806.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386310764|ref|YP_006006820.1| ribosomal RNA small subunit methyltransferase B [Yersinia
enterocolitica subsp. palearctica Y11]
gi|418243715|ref|ZP_12870175.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|433549200|ref|ZP_20505246.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
enterocolitica IP 10393]
gi|318607711|emb|CBY29209.1| ribosomal RNA small subunit methyltransferase B [Yersinia
enterocolitica subsp. palearctica Y11]
gi|325667459|gb|ADZ44103.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|351776783|gb|EHB19069.1| 16S rRNA methyltransferase B [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|431790241|emb|CCO68286.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
enterocolitica IP 10393]
Length = 429
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 88/211 (41%), Gaps = 38/211 (18%)
Query: 11 KLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLS 70
KL P+ + L N P P ++R+ + + +E + + +E +
Sbjct: 154 KLAYPDQWQQILDANNQKP---------PMWLRVSRLHHSRIEYLGLLKQANIEALP--H 202
Query: 71 GFYSLPPDIKIATSMA------YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAK 124
FY P +++ T A ++ G + DA++ V L+ G+ +LDLCAAPG K
Sbjct: 203 DFY--PDAVRLITPCAVSDLPGFELGWVTVQDASAQGCVDLLDPQEGEQILDLCAAPGGK 260
Query: 125 LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT---------FS 175
IL+ V VD+ RL+ + LQ+ L R V DG T F
Sbjct: 261 TTHILE-AAPKAHVLAVDIDEQRLSRVKENLQRLKLHADVR--VGDGRTPDEWCGDQQFD 317
Query: 176 LAPLRLLLD-PGSCNSVLQEKDDTFREWTSR 205
R+LLD P S V++ D +W R
Sbjct: 318 ----RILLDAPCSATGVIRRHPDI--KWLRR 342
>gi|309775876|ref|ZP_07670870.1| NOL1/NOP2/sun family protein [Erysipelotrichaceae bacterium 3_1_53]
gi|308916414|gb|EFP62160.1| NOL1/NOP2/sun family protein [Erysipelotrichaceae bacterium 3_1_53]
Length = 444
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 73 YSLPPDIK-IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDI 131
+ +P D+K + +A+ G Y + ++ +AV L++ +GD VLD+CAAPG K I
Sbjct: 64 FYIPKDLKGLGNHVAHLAGLFYMQEPSASSAVEVLDVQSGDWVLDMCAAPGGKSTQIAAK 123
Query: 132 IGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRL 166
+ DSG + ++ R + +++ RC +
Sbjct: 124 LKDSGFLVSNEIDSKRAGILLSNMERLGF-SRCMI 157
>gi|238852568|ref|ZP_04642978.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
gasseri 202-4]
gi|238834714|gb|EEQ26941.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
gasseri 202-4]
Length = 438
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + +K GKI DAA+ AV A + + VLD C+APG K I + + +G+V
Sbjct: 220 VAQTNLFKDGKITIQDAAASLAVDAFKFTGDEQVLDACSAPGGKTVQIAEKL-TTGNVIA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCR 165
+D+ ++L + ++ + D+ +
Sbjct: 279 LDIHENKLRLVKNAAKRLHVSDKVK 303
>gi|116629419|ref|YP_814591.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus gasseri ATCC
33323]
gi|311110932|ref|ZP_07712329.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
gasseri MV-22]
gi|420147428|ref|ZP_14654704.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
gasseri CECT 5714]
gi|116095001|gb|ABJ60153.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus gasseri ATCC
33323]
gi|311066086|gb|EFQ46426.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
gasseri MV-22]
gi|398401429|gb|EJN54931.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
gasseri CECT 5714]
Length = 438
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + +K GKI DAA+ AV A + + VLD C+APG K I + + +G+V
Sbjct: 220 VAQTNLFKDGKITIQDAAASLAVDAFKFTGDEQVLDACSAPGGKTVQIAEKL-TTGNVIA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCR 165
+D+ ++L + ++ + D+ +
Sbjct: 279 LDIHENKLRLVKNAAKRLHVSDKVK 303
>gi|398841295|ref|ZP_10598518.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM102]
gi|398108803|gb|EJL98752.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM102]
Length = 436
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILETEPALAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|303389837|ref|XP_003073150.1| Nop2-like nucleolar protein [Encephalitozoon intestinalis ATCC
50506]
gi|303302295|gb|ADM11790.1| Nop2-like nucleolar protein [Encephalitozoon intestinalis ATCC
50506]
Length = 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 44 LKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAV 103
LK G E D++ ++ E C + G Y + I S YK GK + +S
Sbjct: 117 LKNGTEKDIDFLKHEKTC-------IDGVYKILDSKDIVFSEEYKNGKFLIQNISSCLPA 169
Query: 104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
LN G V+D C+APG K + I+ ++G + + + R + L++ + +
Sbjct: 170 HILNPDEGSRVIDTCSAPGNKTSQLAMIMKNTGKIYAFERDKARAKTLKIRLERLGVNN 228
>gi|333924837|ref|YP_004498417.1| RNA methylase [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|333750398|gb|AEF95505.1| RNA methylase, NOL1/NOP2/sun family [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 448
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 5/150 (3%)
Query: 14 LPEAFLDFLKENGLD---PSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWL- 69
LP F+ ++E + S ++ PR + D E A + L V W
Sbjct: 4 LPVQFIQRMRETMTEDEFTSFMASYQERPRQGLRLNPLKIDRAEFVARMPFSLTPVPWCD 63
Query: 70 SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
+GFY D + + G Y + ++ A V L AGD VLDLCAAPG K I
Sbjct: 64 TGFYYSEAD-RPGKHPYHAAGLYYIQEPSAMAVVEVLQPEAGDKVLDLCAAPGGKATHIA 122
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYA 159
+G +G + ++ R A L+++
Sbjct: 123 GCLGHTGLLVANEINAKRARALSENLERWG 152
>gi|398883312|ref|ZP_10638269.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM60]
gi|398196974|gb|EJM83964.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM60]
Length = 436
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|373495906|ref|ZP_09586459.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
12_1B]
gi|371967035|gb|EHO84513.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
12_1B]
Length = 348
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%)
Query: 84 SMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDV 143
S +K+GKI DA+S + LN S D VLD C+APG K ++ +++ + G + +D+
Sbjct: 130 SDEFKEGKIIVQDASSYLSAKNLNPSEKDLVLDTCSAPGGKTAVLGELMENKGELLALDI 189
Query: 144 ARHRL 148
H+L
Sbjct: 190 YPHKL 194
>gi|336432507|ref|ZP_08612342.1| hypothetical protein HMPREF0991_01461 [Lachnospiraceae bacterium
2_1_58FAA]
gi|336018844|gb|EGN48581.1| hypothetical protein HMPREF0991_01461 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 460
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 80/201 (39%), Gaps = 7/201 (3%)
Query: 14 LPEAFLDFLKEN-GLDPSVYSAADSTPRYIRLKTG-NEADLEEIEAELKCKLEKVVWLS- 70
LP F + +K G + Y PR+ L+ N+ +E+ L V W+S
Sbjct: 3 LPNTFEEKMKHLLGEEYEDYLKCYEEPRHYGLRVNTNKISVEDFLKIAPWPLRPVPWISN 62
Query: 71 GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
GFY I+ A Y G Y + ++ L I GD VLD+CAAPG K +
Sbjct: 63 GFYYDGDQIQPAKHPYYFAGLYYLQEPSAMTPADRLLIEPGDRVLDVCAAPGGKATELGA 122
Query: 131 IIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL---RLLLD-PG 186
+ G + D++ R ++ + +G+ L G P ++L+D P
Sbjct: 123 KLQGKGVLMANDISNSRAKGLLKNIELFGIGNMLVLSEEPGKLTEYFPEYFDKILIDAPC 182
Query: 187 SCNSVLQEKDDTFREWTSRIP 207
S + ++ + W P
Sbjct: 183 SGEGMFRKDKKMVKAWEEHGP 203
>gi|323702581|ref|ZP_08114243.1| RNA methylase, NOL1/NOP2/sun family [Desulfotomaculum nigrificans
DSM 574]
gi|323532400|gb|EGB22277.1| RNA methylase, NOL1/NOP2/sun family [Desulfotomaculum nigrificans
DSM 574]
Length = 448
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 63/150 (42%), Gaps = 5/150 (3%)
Query: 14 LPEAFLDFLKENGLDP---SVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWL- 69
LP F+ ++E + S ++ PR + D E A + L V W
Sbjct: 4 LPVQFIQRMRETMTEEEFTSFMASYQERPRQGLRLNPLKIDRAEFVARMPFSLTPVPWCD 63
Query: 70 SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
+GFY D + + G Y + ++ A V L AGD VLDLCAAPG K I
Sbjct: 64 TGFYYSEAD-RPGKHPYHAAGLYYIQEPSAMAVVEVLQPEAGDKVLDLCAAPGGKATHIA 122
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYA 159
+G +G + ++ R A L+++
Sbjct: 123 GCLGHTGLLVANEINAKRARALSENLERWG 152
>gi|398900908|ref|ZP_10649895.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM50]
gi|398180737|gb|EJM68315.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM50]
Length = 436
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|387927084|ref|ZP_10129763.1| 16S rRNA methyltransferase B [Bacillus methanolicus PB1]
gi|387589228|gb|EIJ81548.1| 16S rRNA methyltransferase B [Bacillus methanolicus PB1]
Length = 446
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A S A+K G I D +S ALNI + VLD CAAPG K I + + +G V
Sbjct: 221 LAASNAFKNGLITIQDESSMLVAYALNIEENNTVLDACAAPGGKSTHIAERLNKTGKVIS 280
Query: 141 VDVARHRL 148
+D+ H++
Sbjct: 281 LDLHDHKV 288
>gi|282850876|ref|ZP_06260250.1| putative ribosomal RNA small subunit methyltransferase B
[Lactobacillus gasseri 224-1]
gi|282557828|gb|EFB63416.1| putative ribosomal RNA small subunit methyltransferase B
[Lactobacillus gasseri 224-1]
Length = 308
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + +K GKI DAA+ AV A + + VLD C+APG K I + + +G+V
Sbjct: 89 VAQTNLFKDGKITIQDAAASLAVDAFKFTGDEQVLDACSAPGGKTVQIAEKL-TTGNVIA 147
Query: 141 VDVARHRLAACRTLLQKYALGDRCR 165
+D+ ++L + ++ + D+ +
Sbjct: 148 LDIHENKLRLVKNAAKRLHVSDKVK 172
>gi|340355046|ref|ZP_08677739.1| RNA methyltransferase Sun [Sporosarcina newyorkensis 2681]
gi|339622727|gb|EGQ27241.1| RNA methyltransferase Sun [Sporosarcina newyorkensis 2681]
Length = 446
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A++ A++QG + D +S AL + G VLD+CAAPG K I + + D G V
Sbjct: 227 LASTEAFQQGLLTVQDESSMLPALALQVEPGMKVLDMCAAPGGKTTHIAERMKDEGEVQA 286
Query: 141 VDVARHRL 148
D+ H+L
Sbjct: 287 HDLHPHKL 294
>gi|85708267|ref|ZP_01039333.1| menH [Erythrobacter sp. NAP1]
gi|85689801|gb|EAQ29804.1| menH [Erythrobacter sp. NAP1]
Length = 214
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 33/46 (71%)
Query: 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRL 148
V+ L ++AGDHV+DLCA GA L +L+ +G SG VT VD+++ L
Sbjct: 40 VNRLELNAGDHVVDLCAGTGANLAFLLERVGPSGKVTLVDLSQGML 85
>gi|421500980|ref|ZP_15947961.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
necrophorum subsp. funduliforme Fnf 1007]
gi|402266693|gb|EJU16112.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
necrophorum subsp. funduliforme Fnf 1007]
Length = 432
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +++GK+ DAAS A L AG+ VLD C+APG K ++ + + + G +
Sbjct: 211 ILASSEFQEGKMIVQDAASYLAAKNLGAKAGEIVLDTCSAPGGKTSVLAEEMKNEGQILS 270
Query: 141 VDVARHRL 148
+D+ H++
Sbjct: 271 LDIHTHKI 278
>gi|333898250|ref|YP_004472123.1| sun protein [Pseudomonas fulva 12-X]
gi|333113515|gb|AEF20029.1| sun protein [Pseudomonas fulva 12-X]
Length = 438
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G + D A+ A L ++ G VLD CAAPG K C +L+ V VD+
Sbjct: 220 FAEGHVSVQDEAAQLAADLLQLAPGQRVLDACAAPGGKTCHLLEAEPALSEVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSL----APL-RLLLD-PGSCNSVLQEKDD 197
RLA R L + LG L ADG + P R+LLD P S V++ D
Sbjct: 280 RLARVRENLDR--LGLEATLIAADGRDTAAWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|399219258|emb|CCF76145.1| unnamed protein product [Babesia microti strain RI]
Length = 584
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD-IIGD-SGSVTGVDVARHRLAACRT 153
+ S V L++ GD+VLD+CA+PG K ILD + GD SG V G DV+ RL
Sbjct: 116 ELVSMLPVLFLDVQHGDNVLDVCASPGMKYLQILDQLAGDFSGLVVGNDVSASRLFTLAH 175
Query: 154 LLQKYALGDRCRLFVADGTTFS---------LAPLRLLLD-PGSCNSVLQEKDDTFREW 202
++ C L +DG+ F+ + ++L D P +C+ L++ D ++ W
Sbjct: 176 RSAVLSVPSSC-LIHSDGSKFASLYDDRGQKVYFHKILADVPCTCDGTLRKSPDIWKSW 233
>gi|223984485|ref|ZP_03634618.1| hypothetical protein HOLDEFILI_01912 [Holdemania filiformis DSM
12042]
gi|223963556|gb|EEF67935.1| hypothetical protein HOLDEFILI_01912 [Holdemania filiformis DSM
12042]
Length = 443
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 20/145 (13%)
Query: 71 GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
GF + + + ++QG Y + ++ +AV+ L+ GD VLDLCAAPG K I
Sbjct: 61 GFVLTGSETGLGNHIYHRQGLFYMQEPSASSAVTILDPQPGDWVLDLCAAPGGKSTQIAA 120
Query: 131 IIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRL--------- 181
IG SG + ++ R R L+ RL V++ +P RL
Sbjct: 121 RIGQSGFLIANEIDGGR---ARVLMSNLE-----RLGVSEAMITHASPERLCPQLGGWMD 172
Query: 182 --LLD-PGSCNSVLQEKDDTFREWT 203
L+D P S + +++D +W+
Sbjct: 173 KVLVDAPCSGEGMFKKEDRALADWS 197
>gi|254237740|ref|ZP_04931063.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|392981427|ref|YP_006480014.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa DK2]
gi|419757388|ref|ZP_14283731.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa PADK2_CF510]
gi|421183713|ref|ZP_15641162.1| hypothetical protein PAE2_5658 [Pseudomonas aeruginosa E2]
gi|126169671|gb|EAZ55182.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|384396187|gb|EIE42607.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa PADK2_CF510]
gi|392316932|gb|AFM62312.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa DK2]
gi|404539807|gb|EKA49254.1| hypothetical protein PAE2_5658 [Pseudomonas aeruginosa E2]
Length = 434
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ D A+ A L + G VLD C APG K C +L+ V VD+
Sbjct: 220 FAEGRVSVQDEAAQLAAEQLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEES 279
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R LQ+ LG + L AD G + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLQR--LGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|42519213|ref|NP_965143.1| hypothetical protein LJ1288 [Lactobacillus johnsonii NCC 533]
gi|41583501|gb|AAS09109.1| hypothetical protein LJ_1288 [Lactobacillus johnsonii NCC 533]
Length = 463
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ +LN+ GD VLDLCAAPG K + ++ ++G + ++++ R
Sbjct: 76 GYVYSQDPSAMYPAVSLNVKPGDKVLDLCAAPGGKSTALASLLDNTGLLVANEISKSRAK 135
Query: 150 ACRTLLQKYA 159
R L+++
Sbjct: 136 DLRENLERWG 145
>gi|398878982|ref|ZP_10634086.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM67]
gi|398197891|gb|EJM84863.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM67]
Length = 436
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|332795722|ref|YP_004457222.1| Fmu (Sun) domain-containing protein [Acidianus hospitalis W1]
gi|332693457|gb|AEE92924.1| Fmu (Sun) domain protein [Acidianus hospitalis W1]
Length = 350
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 78 DIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGS 137
D +I+ S A+K+G + D +S AV L+ + +L++ +APG K +I + +
Sbjct: 129 DKRISDSTAFKEGLLIPQDKSSVLAVMTLDPKPYEKILEIGSAPGVKSSLIQQLTRNKSF 188
Query: 138 VTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+ +D++ R+ + L++K+ + + L VAD
Sbjct: 189 LISIDISEKRIMQQKKLMEKWGVSN-VELIVADA 221
>gi|398944792|ref|ZP_10671461.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM41(2012)]
gi|398157775|gb|EJM46148.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM41(2012)]
Length = 436
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSAELIAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|340755287|ref|ZP_08691980.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
D12]
gi|419841505|ref|ZP_14364874.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
necrophorum subsp. funduliforme ATCC 51357]
gi|313687543|gb|EFS24378.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium sp.
D12]
gi|386905031|gb|EIJ69812.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
necrophorum subsp. funduliforme ATCC 51357]
Length = 432
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +++GK+ DAAS A L AG+ VLD C+APG K ++ + + + G +
Sbjct: 211 ILASSEFQEGKMIVQDAASYLAAKNLGAKAGEIVLDTCSAPGGKTSVLAEEMKNEGQILS 270
Query: 141 VDVARHRL 148
+D+ H++
Sbjct: 271 LDIHTHKI 278
>gi|134301049|ref|YP_001114545.1| Fmu (Sun) domain-containing protein [Desulfotomaculum reducens
MI-1]
gi|134053749|gb|ABO51720.1| Fmu (Sun) domain protein [Desulfotomaculum reducens MI-1]
Length = 470
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 19/208 (9%)
Query: 9 ISKLPLPEAFLDFLKE-NGLDPSVYSAADSTPRYIRLKTG----NEADLEEIEAELKCKL 63
I ++ LP AFL +++ G D + + R L+ + +DL E+ + L+
Sbjct: 4 IEEMKLPAAFLSKMEQLVGADYPQFLRSYEGSRLAGLRANGLKISPSDLNELLSFLE--- 60
Query: 64 EKVVWLS-GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPG 122
E + W GFY + A Y G Y + ++ L G+ VLDLCAAPG
Sbjct: 61 EPIAWSKDGFYYNEATTRPAKHPYYYAGLYYIQEPSAMLPAELLGAQPGERVLDLCAAPG 120
Query: 123 AKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL--- 179
K + +G G + D+ R +++Y + + V + T LA +
Sbjct: 121 GKSLQLAAHLGRKGLLVTNDLHPQRARVLLKNIERYGVANAI---VLNETPSHLAKVFAG 177
Query: 180 ---RLLLD-PGSCNSVLQEKDDTFREWT 203
R+L+D P S + +++ D +EW+
Sbjct: 178 FFDRILVDAPCSGEGMFRKEPDMAKEWS 205
>gi|70733533|ref|YP_257172.1| 16S rRNA methyltransferase GidB [Pseudomonas protegens Pf-5]
gi|68347832|gb|AAY95438.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
protegens Pf-5]
Length = 441
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L ++ G VLD C APG K C IL++ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAAELLELAPGQRVLDACCAPGGKTCHILEVQPALAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG +L ADG + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLDR--LGLDAQLIAADGRDTQAWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|85373706|ref|YP_457768.1| hypothetical protein ELI_04395 [Erythrobacter litoralis HTCC2594]
gi|341615008|ref|ZP_08701877.1| hypothetical protein CJLT1_08623 [Citromicrobium sp. JLT1363]
gi|84786789|gb|ABC62971.1| menH [Erythrobacter litoralis HTCC2594]
Length = 214
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRL 148
V+ L + AGDHV+DLCA GA L +L+ +G SG VT VD+++ L
Sbjct: 40 VNRLELKAGDHVIDLCAVTGANLAFLLERVGPSGKVTLVDLSQGML 85
>gi|225028095|ref|ZP_03717287.1| hypothetical protein EUBHAL_02365 [Eubacterium hallii DSM 3353]
gi|224954565|gb|EEG35774.1| ribosomal RNA small subunit methyltransferase B [Eubacterium hallii
DSM 3353]
Length = 466
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 62 KLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
K+EK +L +++ + A++QGK D +S AV+ +I+ GD VLD+CAAP
Sbjct: 222 KVEKGNYLPYAFTISNLNYLGKIAAFRQGKFAVQDESSQLAVAIADINEGDFVLDVCAAP 281
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHR 147
G K D + +G V D+ ++
Sbjct: 282 GGKTFHAADRLKGAGKVLSRDLTEYK 307
>gi|402837092|ref|ZP_10885623.1| ribosomal RNA small subunit methyltransferase B [Mogibacterium sp.
CM50]
gi|402270108|gb|EJU19377.1| ribosomal RNA small subunit methyltransferase B [Mogibacterium sp.
CM50]
Length = 423
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%)
Query: 78 DIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGS 137
D ++ + Y +G +S ++ + N + GD VLDLCAAPG K + +++ D G
Sbjct: 216 DGQVVNTPEYMRGMFSIQSTSSLRSIESFNPAPGDKVLDLCAAPGGKAAAMAEMMNDEGV 275
Query: 138 VTGVDVARHRLAACRTLLQKYALG 161
+ D+ HR+ + LG
Sbjct: 276 IIATDIHEHRIRLINDTTARLGLG 299
>gi|298675861|ref|YP_003727611.1| RNA methylase [Methanohalobium evestigatum Z-7303]
gi|298288849|gb|ADI74815.1| RNA methylase, NOL1/NOP2/sun family [Methanohalobium evestigatum
Z-7303]
Length = 292
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 7/119 (5%)
Query: 39 PRYIRLKT--GNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGID 96
P IR+ T N +++ + + E+ W + F + D + S+ + GK + +
Sbjct: 23 PYDIRINTIKANVPEIKSLLTQTGFSFEQRDWNNEFLKV--DFEPGKSILHWIGKYHVQE 80
Query: 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
+ SG ALN D VLD+CAAPG+K + ++ ++G + D++++R+ R+LL
Sbjct: 81 SVSGIPPLALNPIPYDRVLDMCAAPGSKTSQMSVLMENTGEILANDISKNRI---RSLL 136
>gi|253573323|ref|ZP_04850666.1| fmu domain-containing protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251846851|gb|EES74856.1| fmu domain-containing protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 513
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 6/178 (3%)
Query: 30 SVYSAADSTPRYIRLKTGN-EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYK 88
+ Y++ DS P++ ++ + D + +A + L + W Y + K Y
Sbjct: 24 NFYASYDS-PKFAGIRVNTLKIDPIDFKAVVPFDLRPIPWCQTGYYVEEQAKPGKHPYYH 82
Query: 89 QGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRL 148
G Y + ++ A V L+++ G+ VLDLCAAPG K I + G + D+ R
Sbjct: 83 AGLYYIQEPSAMAPVELLDVTPGERVLDLCAAPGGKSTQIAAKLCGRGMLVTNDINPERT 142
Query: 149 AACRTLLQKYALGDRCRLFVADGTTFSLAPL---RLLLD-PGSCNSVLQEKDDTFREW 202
A ++ Y + + L + P ++L+D P S + ++ +D R W
Sbjct: 143 KALAKNIELYGVRNAVVLGESPERIARAFPSFFDKILIDAPCSGEGMFRKDEDMARHW 200
>gi|116053737|ref|YP_788172.1| tRNA and rRNA cytosine-C5-methylases [Pseudomonas aeruginosa
UCBPP-PA14]
gi|421177850|ref|ZP_15635495.1| hypothetical protein PACI27_6070 [Pseudomonas aeruginosa CI27]
gi|115588958|gb|ABJ14973.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa UCBPP-PA14]
gi|404528712|gb|EKA38775.1| hypothetical protein PACI27_6070 [Pseudomonas aeruginosa CI27]
Length = 434
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ D A+ A L + G VLD C APG K C +L+ V VD+
Sbjct: 220 FAEGRVSVQDEATQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEES 279
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R LQ+ LG + L AD G + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLQR--LGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|429100951|ref|ZP_19162925.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
turicensis 564]
gi|426287600|emb|CCJ89038.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
turicensis 564]
Length = 480
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 24/225 (10%)
Query: 14 LPEAFLDFLKEN---GLDPSVYSAADSTP--RYIR---LKTGNEADLEEIEAELKCKLEK 65
LPEAFLD +++ GL + AA P R IR LK EA L ++ A +L
Sbjct: 9 LPEAFLDVMRDAMPAGLAMDDFIAACQRPLRRSIRVNTLKISVEAFLAQV-APYGWRLTP 67
Query: 66 VVWL-SGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCA 119
V W GF+ D + + ++ + G+ Y +A+S V+AL + +A V+D+ A
Sbjct: 68 VPWCPEGFWIEREDEDVLPLGSTAEHLSGQFYIQEASSMLPVAALFADNNAPARVMDVAA 127
Query: 120 APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA-P 178
APG+K I ++ + G + + + R+ + + + + L DG F A P
Sbjct: 128 APGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGIRN-VGLTHFDGRVFGAALP 186
Query: 179 LR---LLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARE 219
+ +LLD P S V+++ D R W+ P ++ A RE
Sbjct: 187 EQFDAILLDAPCSGEGVVRKDPDALRNWS---PQSNQEIAATQRE 228
>gi|417837475|ref|ZP_12483713.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus johnsonii pf01]
gi|338761018|gb|EGP12287.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus johnsonii pf01]
Length = 463
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ +LN+ GD VLDLCAAPG K + ++ ++G + ++++ R
Sbjct: 76 GYVYSQDPSAMYPAVSLNVKPGDKVLDLCAAPGGKSTALASLLDNTGLLVANEISKSRAK 135
Query: 150 ACRTLLQKYA 159
R L+++
Sbjct: 136 DLRENLERWG 145
>gi|296472402|tpg|DAA14517.1| TPA: NOL1/NOP2/Sun domain family, member 5-like [Bos taurus]
Length = 368
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y+ G + D AS L G HV+D CAAPG K + ++ + G + D
Sbjct: 109 YQAGHLILQDKASCLPAMLLAPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDQDAK 168
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSCNSVLQEKDDTFR 200
RLA+ TLL + + C L D S + R +LLDP S + +
Sbjct: 169 RLASMATLLARAGV-SCCELAEQDFLAVSPSDQRYCQVQYILLDPSCSGSGMPSRQ--LE 225
Query: 201 EWTSRIPWKERKRAVKA-RENAASKAIV 227
E S P ER RA+ A ++ A S A+
Sbjct: 226 EPKSCTPSPERLRALAAFQQRALSHALT 253
>gi|419640177|ref|ZP_14172114.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23357]
gi|380619716|gb|EIB38756.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
LMG 23357]
Length = 292
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 9/139 (6%)
Query: 53 EEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNIS 109
EE+E E + K ++ + L D I +SM + + Y + +S L +
Sbjct: 39 EELEKEFLKQNLKFKKINAYCYLFDAKDKAILSSMKVFNEAYFYIQNYSSYLCALNLEVK 98
Query: 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA 169
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 99 AGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVFMK 156
Query: 170 DGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 157 DGKNIGNLCPLKFDKILLD 175
>gi|184155726|ref|YP_001844066.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
gi|183227070|dbj|BAG27586.1| rRNA methylase [Lactobacillus fermentum IFO 3956]
Length = 448
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ + A+K G + D ++ AV +++++ + VLD CAAPG K I + + D G V
Sbjct: 226 VLKTAAFKNGVVTIQDESAMLAVESMHLTGHERVLDACAAPGGKTVQIAETLTD-GEVYA 284
Query: 141 VDVARHRLAACRTLLQKYALGDR---CRL 166
+D+ RH++ Q+ + DR C+L
Sbjct: 285 LDIHRHKVGLIEKNAQRMGVDDRVFACQL 313
>gi|117926942|ref|YP_867559.1| sun protein [Magnetococcus marinus MC-1]
gi|117610698|gb|ABK46153.1| 16S rRNA m(5)C-967 methyltransferase [Magnetococcus marinus MC-1]
Length = 452
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 4/110 (3%)
Query: 75 LPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD 134
LP K+AT Y G D A+ A L AG+ +LD CAAPG K ++ + G
Sbjct: 222 LPQGAKVATLPGYSNGWFAVQDRAAQAVARLLAPQAGEAILDACAAPGGKSAHLVALGGA 281
Query: 135 SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD 184
+T +D A+ RL + + + + +L AD T P+ L D
Sbjct: 282 GVVITALDSAQQRLERMGENMARLGIRSQVKLRCADATQ----PIEGLFD 327
>gi|182415839|ref|YP_001820905.1| Fmu (Sun) domain-containing protein [Opitutus terrae PB90-1]
gi|177843053|gb|ACB77305.1| Fmu (Sun) domain protein [Opitutus terrae PB90-1]
Length = 488
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 70 SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
+GF+ +PP ++G+IY D A+ V L +AG+ VLD CAAPG K +I
Sbjct: 259 AGFFEIPPGHWTEIEPLLQRGRIYLQDPATRIPVELLAPAAGELVLDGCAAPGGKSLLIA 318
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD 170
D + G + +D+ R+ + L + G L D
Sbjct: 319 DSM-RQGRLVAMDLPGARIGRLKENLARVPAGVEVALVQGD 358
>gi|319646043|ref|ZP_08000273.1| YloM protein [Bacillus sp. BT1B_CT2]
gi|317391793|gb|EFV72590.1| YloM protein [Bacillus sp. BT1B_CT2]
Length = 444
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 48 NEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALN 107
NEA +E E +L + V L G IA++ +K+G++ D +S AL
Sbjct: 194 NEAGIEAEEGDLSK--DAVKLLKG--------TIASTPFFKEGEVTIQDESSMLVARALG 243
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRL 148
G+ VLD CAAPG K I +++ D+G V +D+ +H++
Sbjct: 244 PERGETVLDACAAPGGKSTHIGELLEDTGKVVSLDLHQHKV 284
>gi|283956050|ref|ZP_06373537.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1336]
gi|283792370|gb|EFC31152.1| NOL1/NOP2/sun family protein [Campylobacter jejuni subsp. jejuni
1336]
Length = 292
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 9/139 (6%)
Query: 53 EEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSM-AYKQGKIYGIDAASGAAVSALNIS 109
EE+E E + K ++ + L D I +SM + + Y + +S L +
Sbjct: 39 EELEKEFLKQNLKFKKINAYCYLFDAKDKAILSSMKVFNEAYFYIQNYSSYLCALNLEVK 98
Query: 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA 169
AG VLD+CAAPG K + + + ++G + +++R R + L+ Y G ++F+
Sbjct: 99 AGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLKNY--GVNAKVFMK 156
Query: 170 DGTTF-SLAPL---RLLLD 184
DG +L PL ++LLD
Sbjct: 157 DGKNIGNLCPLKFDKILLD 175
>gi|163119428|ref|YP_078968.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|404489065|ref|YP_006713171.1| 16S rRNA methyltransferase B [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423682119|ref|ZP_17656958.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
WX-02]
gi|52348056|gb|AAU40690.1| rRNA large subunit methyltransferase B [Bacillus licheniformis DSM
13 = ATCC 14580]
gi|145902935|gb|AAU23330.2| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|383438893|gb|EID46668.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus licheniformis
WX-02]
Length = 448
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 48 NEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALN 107
NEA +E E +L + V L G IA++ +K+G++ D +S AL
Sbjct: 198 NEAGIEAEEGDLSK--DAVKLLKG--------TIASTPFFKEGEVTIQDESSMLVARALG 247
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRL 148
G+ VLD CAAPG K I +++ D+G V +D+ +H++
Sbjct: 248 PERGETVLDACAAPGGKSTHIGELLEDTGKVVSLDLHQHKV 288
>gi|168704061|ref|ZP_02736338.1| Fmu, rRNA SAM-dependent methyltransferase:Nop2p [Gemmata
obscuriglobus UQM 2246]
Length = 465
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y +G D +S SAL + G +LD CAAPG K +++++ G +T D+
Sbjct: 266 YAEGDFAVQDHSSMLVASALGVQPGMRILDACAAPGGKTTHLMELMDGRGHITACDIDPK 325
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSLAPL 179
RL L Q+ L + + D F P
Sbjct: 326 RLETVAALAQRMRLTGIETVLLKDNEEFPAGPF 358
>gi|373112396|ref|ZP_09526628.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
necrophorum subsp. funduliforme 1_1_36S]
gi|371655815|gb|EHO21153.1| ribosomal RNA small subunit methyltransferase B [Fusobacterium
necrophorum subsp. funduliforme 1_1_36S]
Length = 385
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 18/165 (10%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +++GK+ DAAS A L AG+ VLD C+APG K ++ + + + G +
Sbjct: 164 ILASSEFQEGKMIVQDAASYLAAKNLGAKAGEIVLDTCSAPGGKTSVLAEDMKNEGQILS 223
Query: 141 VDVARHRLAACR--------TLLQKYALGDRCRLFVADGTTFSLAPLRLLLD-PGSCNSV 191
+D+ H++ + T++Q L R G F R+L+D P S V
Sbjct: 224 LDIHTHKIKLIQENCKKLGITIVQAVKLD--ARHLSLQGKKFD----RILVDAPCSGYGV 277
Query: 192 LQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIF 236
L +K + ++ P + + RE AS A V E+++
Sbjct: 278 LAKKPEGL---YTKKPENIGELVILQREILASAAEVLKVGGEMVY 319
>gi|443323050|ref|ZP_21052061.1| ribosomal RNA small subunit methyltransferase RsmB [Gloeocapsa sp.
PCC 73106]
gi|442787231|gb|ELR96953.1| ribosomal RNA small subunit methyltransferase RsmB [Gloeocapsa sp.
PCC 73106]
Length = 451
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Query: 77 PDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSG 136
P I Y QG D+++ L+ G+ ++D CAAPG K I +++GD G
Sbjct: 223 PRGSIQQLPGYDQGWWVVQDSSAQLVTHLLDPQPGEKIIDACAAPGGKTTHIAELMGDVG 282
Query: 137 SVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL--RLLLD-PGSCNSVLQ 193
V +D + RL + L + L + L D +T L R+L+D P S N L
Sbjct: 283 EVWAIDRSFKRLKKVQENLDRLQL-NSISLHHLDSSTSELPQECDRVLVDAPCSGNGTLH 341
Query: 194 EKDDT-FREWTSRIP 207
++ D +R+ IP
Sbjct: 342 KRPDLRWRQTPEEIP 356
>gi|355650969|ref|ZP_09056397.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas sp.
2_1_26]
gi|354826493|gb|EHF10705.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas sp.
2_1_26]
Length = 434
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ D A+ A L + G VLD C APG K C +L+ V VD+
Sbjct: 220 FAEGRVSVQDEAAQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEES 279
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R LQ+ LG + L AD G + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLQR--LGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|254478823|ref|ZP_05092189.1| NOL1/NOP2/sun family putative RNA methylase protein
[Carboxydibrachium pacificum DSM 12653]
gi|214035230|gb|EEB75938.1| NOL1/NOP2/sun family putative RNA methylase protein
[Carboxydibrachium pacificum DSM 12653]
Length = 460
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 11 KLPLPEAFLDFLKENGLDPSVYSA----ADSTPRY-IRLKTGNEADLEEIEAELKCKLEK 65
K+P+ E FL +KE L Y A + P+ +R+ T + D+E + ++E
Sbjct: 2 KVPVKEEFLKRMKE--LLKEEYEAFLKEYEKKPQKGLRVNTL-KIDVENFKKIAPFEIEP 58
Query: 66 VVWL-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAK 124
+ W +GFY + K + + G Y + + A V L+ G+ +LD+ AAPG K
Sbjct: 59 IPWCPTGFY-YEKEEKAGNHLYHVLGLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGK 117
Query: 125 LCMILDIIGDSGSVTGVDVARHRLAA 150
I IGD G + ++ R R+ A
Sbjct: 118 TTHIASKIGDEGLIVANEIDRKRIRA 143
>gi|20808537|ref|NP_623708.1| tRNA and rRNA cytosine-C5-methylase [Thermoanaerobacter
tengcongensis MB4]
gi|20517161|gb|AAM25312.1| tRNA and rRNA cytosine-C5-methylases [Thermoanaerobacter
tengcongensis MB4]
Length = 460
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 69/146 (47%), Gaps = 10/146 (6%)
Query: 11 KLPLPEAFLDFLKENGLDPSVYSA----ADSTPRY-IRLKTGNEADLEEIEAELKCKLEK 65
K+P+ E FL +KE L Y A + P+ +R+ T + D+E + ++E
Sbjct: 2 KVPVKEEFLKRMKE--LLKEEYEAFLKEYEKKPQKGLRVNTL-KIDVENFKKIAPFEIEP 58
Query: 66 VVWL-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAK 124
+ W +GFY + K + + G Y + + A V L+ G+ +LD+ AAPG K
Sbjct: 59 IPWCPTGFY-YEKEEKAGNHLYHVLGLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGK 117
Query: 125 LCMILDIIGDSGSVTGVDVARHRLAA 150
I IGD G + ++ R R+ A
Sbjct: 118 TTHIASKIGDEGLIVANEIDRKRIRA 143
>gi|384496052|gb|EIE86543.1| hypothetical protein RO3G_11254 [Rhizopus delemar RA 99-880]
Length = 204
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAAC 151
Y +DA S A AL+I DHVLD+CAAPG K IL + G +T ++A R
Sbjct: 120 YILDAGSVLATEALDIQPEDHVLDICAAPGGKTLSILQRLDAKYGQLTSNEIASDRRRRL 179
Query: 152 RTLLQKY 158
R +++ Y
Sbjct: 180 RQVIESY 186
>gi|296386489|ref|ZP_06875988.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa PAb1]
gi|416881410|ref|ZP_11921605.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa 152504]
gi|334835789|gb|EGM14641.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa 152504]
Length = 434
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ D A+ A L + G VLD C APG K C +L+ V VD+
Sbjct: 220 FAEGRVSVQDEAAQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEES 279
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R LQ+ LG + L AD G + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLQR--LGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|242280710|ref|YP_002992839.1| Fmu (Sun) domain-containing protein [Desulfovibrio salexigens DSM
2638]
gi|242123604|gb|ACS81300.1| Fmu (Sun) domain protein [Desulfovibrio salexigens DSM 2638]
Length = 418
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 79 IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSV 138
+ S+A + G+IY D +S L GD VLD+CAAPG+K ++ ++G G V
Sbjct: 48 FPLGESVAARFGRIYIQDRSSMLPPLMLAPKEGDVVLDMCAAPGSKTGLLARLVGRDGFV 107
Query: 139 TGVDVARHRLAACRTLLQK 157
+ + RLA R L+K
Sbjct: 108 LASEPSSDRLALLRQNLRK 126
>gi|442804124|ref|YP_007372273.1| ribosomal RNA small subunit methyltransferase F [Clostridium
stercorarium subsp. stercorarium DSM 8532]
gi|442739974|gb|AGC67663.1| ribosomal RNA small subunit methyltransferase F [Clostridium
stercorarium subsp. stercorarium DSM 8532]
Length = 461
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 90/208 (43%), Gaps = 17/208 (8%)
Query: 8 EISKLPLPEAFLDFLKENGLDPSVYS---AADSTPRYIRLKTGN-EADLEEIEAELKCKL 63
E + +P F + + N +DPS + +A + R L+ + + DL+ E ++
Sbjct: 7 EFELMRIPAEFENKFR-NLMDPSEFDEFISALNEERVTGLRINSLKIDLDTWEKITPFEI 65
Query: 64 EKVVWLS-GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPG 122
+ V W S GFY + D + T Y G Y + ++ L + GD VLDLCAAPG
Sbjct: 66 QPVPWSSCGFY-IEDDSRPGTHPYYHAGLYYIQEPSAMFPAEVLAVEPGDRVLDLCAAPG 124
Query: 123 AKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL--- 179
K + + + G + D+ R+ A L++ L V + T L+
Sbjct: 125 GKTVALAAAMKNQGFLLSNDINPKRIKA---LVKNIELCGITNAVVTNETPEKLSGFYEG 181
Query: 180 ---RLLLD-PGSCNSVLQEKDDTFREWT 203
++LLD P S + ++ D + W
Sbjct: 182 FFSKILLDVPCSGEGMFRKDADAVKSWN 209
>gi|339250794|ref|XP_003374382.1| hypothetical protein Tsp_09736 [Trichinella spiralis]
gi|316969317|gb|EFV53435.1| hypothetical protein Tsp_09736 [Trichinella spiralis]
Length = 510
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
Y +DAAS V ALN+ D VLD+CAAPG K +IL+ + V DV R+ R
Sbjct: 321 YLMDAASVVPVLALNVEPSDVVLDMCAAPGGKSLLILETLLPELLVLN-DVNLSRMNRLR 379
Query: 153 TLLQKYALGD 162
+L Y D
Sbjct: 380 RMLNSYIPSD 389
>gi|14521455|ref|NP_126931.1| proliferating-cell nucleolar antigen P120, [Pyrococcus abyssi GE5]
gi|5458674|emb|CAB50161.1| Sun/NOL1/NOP2 nucleolar protein [Pyrococcus abyssi GE5]
gi|380742059|tpe|CCE70693.1| TPA: proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi GE5]
Length = 449
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 10/136 (7%)
Query: 32 YSAADSTPRYIRLKTGN-EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIA------TS 84
+ A + +I ++ +A++EE+ EL+ +VV +P +KI +S
Sbjct: 177 FRAVNERQEWISVRVNTLKANVEEVIEELRNDGVEVVRSE---RVPTILKIKGPYNFDSS 233
Query: 85 MAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVA 144
A+ +GKI + AS A LN G+ ++DL AAPG K + +++ + G + D+
Sbjct: 234 KAFNKGKIIVQEEASAVASLILNPQPGEVIVDLAAAPGGKTTHLAELMKNKGKIYAFDID 293
Query: 145 RHRLAACRTLLQKYAL 160
+ R+ + + + +
Sbjct: 294 KTRMKRLKEFVNRMGI 309
>gi|384260795|ref|YP_005415981.1| tRNA and rRNA cytosine-C5-methylase [Rhodospirillum photometricum
DSM 122]
gi|378401895|emb|CCG07011.1| tRNA and rRNA cytosine-C5-methylase [Rhodospirillum photometricum
DSM 122]
Length = 606
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 47/110 (42%), Gaps = 3/110 (2%)
Query: 66 VVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKL 125
V +G LP + Y+ G + DAA+ V AG DLCAAPG K
Sbjct: 366 TVLPTGSVRLPVGTAVPELPGYRDGTWWVQDAAAALPVRLAGPLAGKRAADLCAAPGGK- 424
Query: 126 CMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175
L + V +D A RLA R L + LG+ L AD TT++
Sbjct: 425 --TLQLAAAGAHVVALDRAEARLARVRENLTRTKLGEAVTLIAADATTWA 472
>gi|332159134|ref|YP_004424413.1| sun protein (fmu protein) [Pyrococcus sp. NA2]
gi|331034597|gb|AEC52409.1| sun protein (fmu protein) [Pyrococcus sp. NA2]
Length = 450
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
YK+G D AS LN G+ VLDL AAPG+K ++ + G + VD +
Sbjct: 238 YKKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYD 297
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTF 174
RL + ++ + + +L ADG +F
Sbjct: 298 RLMKMKERMKILGVKN-VKLVHADGQSF 324
>gi|260663557|ref|ZP_05864447.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
fermentum 28-3-CHN]
gi|260552098|gb|EEX25151.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
fermentum 28-3-CHN]
Length = 448
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ + A+K G + D ++ AV +++++ + VLD CAAPG K I + + D G V
Sbjct: 226 VLKTAAFKNGVVTIQDESAMLAVESMHLTGHERVLDACAAPGGKTVQIAEALTD-GEVYA 284
Query: 141 VDVARHRLAACRTLLQKYALGDRC 164
+D+ RH++ Q+ + DR
Sbjct: 285 LDIHRHKVGLIEKNAQRMGVDDRV 308
>gi|401825209|ref|XP_003886700.1| tRNA/rRNA cytosine-C5-methylase [Encephalitozoon hellem ATCC 50504]
gi|395459845|gb|AFM97719.1| tRNA/rRNA cytosine-C5-methylase [Encephalitozoon hellem ATCC 50504]
Length = 305
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 7/171 (4%)
Query: 39 PRYIRLKT--GNEADLEEIEAELKCKLEKVVWL-SGFYSLPPDIKIATSMAYKQGKIYGI 95
P IR+ T D+ ++ L+ + W+ SG + I + Y G
Sbjct: 33 PTTIRINTLLKRRKDVSKLLRGRGVDLDDLSWIDSGCVIFKSSVPIGATPEYLAGYYCLQ 92
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
AAS V + + G V+DLCAAPG K I ++ ++G + DV R+A ++ +
Sbjct: 93 GAASMLPVLNMELKEGLSVVDLCAAPGGKTTHIAALMENTGVIYANDVNEERIAGLKSNI 152
Query: 156 QKYALGDRCRLFVADGTTFSLAPL-RLLLDPGSCNSVLQEKDDTFREWTSR 205
Q+ + + C + DG ++ + R+LLD + + KD + + TSR
Sbjct: 153 QRMGVRN-CIVMNMDGRKVNVGKVDRVLLDAPCSGTGVISKDPSVK--TSR 200
>gi|416866944|ref|ZP_11915970.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa 138244]
gi|334833889|gb|EGM12914.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa 138244]
gi|453044697|gb|EME92419.1| 16S rRNA methyltransferase B [Pseudomonas aeruginosa PA21_ST175]
Length = 434
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ D A+ A L + G VLD C APG K C +L+ V VD+
Sbjct: 220 FAEGRVSVQDEAAQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEES 279
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R LQ+ LG + L AD G + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLQR--LGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|448727730|ref|ZP_21710079.1| RNA methylase, NOL1/NOP2/sun family protein [Halococcus morrhuae
DSM 1307]
gi|445789716|gb|EMA40395.1| RNA methylase, NOL1/NOP2/sun family protein [Halococcus morrhuae
DSM 1307]
Length = 302
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 9/149 (6%)
Query: 62 KLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
+ E V W G L T AY G ++G + S + G+ V CAAP
Sbjct: 51 EYEPVEWHPGLLRLDSTSPGRTWGAY-HGWLHGQEEVSTLPALVCDPDPGERVWAACAAP 109
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL-- 179
G K + + GD G++ D + RL+A R ++ + + D +SL P
Sbjct: 110 GGKATQLAALAGDEGTIVANDRSLGRLSALRFNAERLGVTSMA-VTNRDARNYSLKPFDF 168
Query: 180 ----RLLLD-PGSCNSVLQEKDDTFREWT 203
R L+D P SC +++ D EW+
Sbjct: 169 DAFDRALVDAPCSCEGTIRKNPDALDEWS 197
>gi|354595948|ref|ZP_09013965.1| Ribosomal RNA small subunit methyltransferase B [Brenneria sp.
EniD312]
gi|353673883|gb|EHD19916.1| Ribosomal RNA small subunit methyltransferase B [Brenneria sp.
EniD312]
Length = 429
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 15/128 (11%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++QG + DA++ V L+ G+ +LDLCAAPG K IL+ S V VD+
Sbjct: 222 GFEQGWVTVQDASAQGCVHWLDPHNGETILDLCAAPGGKTTHILEAAPQS-QVLAVDIDE 280
Query: 146 HRLAACRTLLQKY------ALGD-RCRLFVADGTTFSLAPLRLLLD-PGSCNSVLQEKDD 197
RL+ R LQ+ LGD R + G TF R+LLD P S V++ D
Sbjct: 281 SRLSRIRENLQRLQLHAQVVLGDGRQPESWSQGRTFD----RILLDAPCSATGVVRRHPD 336
Query: 198 TFREWTSR 205
+W R
Sbjct: 337 I--KWLRR 342
>gi|449472095|ref|XP_004153495.1| PREDICTED: ribosomal RNA small subunit methyltransferase B-like,
partial [Cucumis sativus]
Length = 211
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 33/166 (19%)
Query: 69 LSGFY--SLPPDIKIATSM------AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
+SGF + P +++A+ +++G + DA++ ++ L G+ +LDLCAA
Sbjct: 1 MSGFTHAAYPDAVRLASPAPVHALPGFEEGWVTVQDASAQGCMTWLEPKDGEQILDLCAA 60
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG--------- 171
PG K IL+ + SV VDV RL+ L++ LG + ++ DG
Sbjct: 61 PGGKTTHILE-VAPQASVMAVDVDEQRLSRVYDNLKR--LGMKAQVKQGDGRKPADWCGD 117
Query: 172 TTFSLAPLRLLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVK 216
T F R+LLD P S V++ D I W R R +K
Sbjct: 118 TRFD----RILLDAPCSATGVIRRHPD--------IKWLRRDRDIK 151
>gi|417919600|ref|ZP_12563129.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
australis ATCC 700641]
gi|342832367|gb|EGU66663.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
australis ATCC 700641]
Length = 433
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
A S +KQGK+ D S AL + D VLD CAAPG K + + D G VT
Sbjct: 213 FAGSDYFKQGKLTIQDETSQLVAPALEVQPSDQVLDACAAPGGKTTHLASYLVD-GQVTA 271
Query: 141 VDVARHRLAACRTLLQKYALGDRCR 165
+D+ H+L + ++ + D+ +
Sbjct: 272 LDLYDHKLQLIQENAERLGVADKIQ 296
>gi|262193849|ref|YP_003265058.1| tRNA (cytosine-5-)-methyltransferase [Haliangium ochraceum DSM
14365]
gi|262077196|gb|ACY13165.1| tRNA (cytosine-5-)-methyltransferase [Haliangium ochraceum DSM
14365]
Length = 499
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 1/112 (0%)
Query: 63 LEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPG 122
LE + W G Y +Y+ G + + AS V+ L G+ +LDLCAAPG
Sbjct: 64 LEPMSWHPGGYRWRGARTPGLHWSYQAGLYHVQEEASMVPVALLAPEPGERILDLCAAPG 123
Query: 123 AKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174
K I +G+ G+V D + RLAA + + + L + + DGT +
Sbjct: 124 NKTAQIALALGNRGTVVANDRSGGRLAAIQNAVTRLGLCN-VSMTGCDGTRY 174
>gi|50550307|ref|XP_502626.1| YALI0D09691p [Yarrowia lipolytica]
gi|49648494|emb|CAG80814.1| YALI0D09691p [Yarrowia lipolytica CLIB122]
Length = 506
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 120/299 (40%), Gaps = 44/299 (14%)
Query: 9 ISKLPLPEAFLDF------------LKENGLDPSVYSAADSTP-RYIRLKT--GNEADLE 53
ISK PL + FL LK D DSTP R+IR+ T NE +
Sbjct: 98 ISKGPLKDMFLAHQTRLKSELTKFKLKHKVSDLDELVEEDSTPIRWIRINTVLSNEEEFH 157
Query: 54 EIE--AELK------------CKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAAS 99
+ A LK ++ K + + Y + P K+A YKQGKI D AS
Sbjct: 158 KTPLIARLKPIDKIEGGTIQPGQIYKDIHVPHLYGIHPREKLANCELYKQGKIIIQDRAS 217
Query: 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKY 158
+ LN G ++D C+APG K + + G GS+ + R +++
Sbjct: 218 CFPATILNPQPGQKLIDCCSAPGNKTTHLASFVAGTPGSIDAFEKDAIRAKLLTKMVKTA 277
Query: 159 ALGDRCRLFVADGTTFSLAPLR----LLLDPGSCNSVL----QEKDDTFREWTSRIPWKE 210
+ ++ V D T + +L+DP S + E D E T+R K+
Sbjct: 278 GCHNCIKVNVGDFTDTNPDDYPEVEGILVDPSCSGSGIFGRKHEDDAAAAEETNRDDQKD 337
Query: 211 RKRAVKARE---NAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQS-VCNSEVSSSGY 265
+ R K E A++ ++++ I + EE+ Q + +S+V++ G+
Sbjct: 338 QFRLHKLSEFQYRIVKHALLFGSAKKVVY--STCSIHNIENEEVVQKLLLDSQVAAEGW 394
>gi|239636304|ref|ZP_04677306.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
warneri L37603]
gi|239597659|gb|EEQ80154.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
warneri L37603]
Length = 435
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S A+K G + D +S + ++ D VLD C+APG K C I +I+ G V
Sbjct: 219 IVNSRAFKDGLVSIQDKSSMFVAHIMGLNRDDSVLDACSAPGGKACHIAEILSPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTT-FSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ ++K L + + + D T ++ ++L+D P S VL+ K
Sbjct: 279 TDIHDHKIKLIDFNIRKLRLKN-IKAYQHDATKPYNNQYDKILVDAPCSGFGVLRHK 334
>gi|260772859|ref|ZP_05881775.1| ribosomal RNA small subunit methyltransferase F [Vibrio
metschnikovii CIP 69.14]
gi|260611998|gb|EEX37201.1| ribosomal RNA small subunit methyltransferase F [Vibrio
metschnikovii CIP 69.14]
Length = 473
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 99/212 (46%), Gaps = 19/212 (8%)
Query: 10 SKLPLPEAFLDFLKE---NGLDPSVYSAADSTP--RYIRLKT--GNEADLEEIEAELKCK 62
S + LPE FL + E + L+ + + AA P + IR+ T + AD + A+
Sbjct: 3 STVALPEEFLATIAEILPSTLNLNDFIAACQRPLRKSIRVNTLKISVADFQTRAADKGWY 62
Query: 63 LEKVVWL-SGFYSLPPD--IKIATSMAYKQGKIYGIDAASGAAVSALNISAG---DHVLD 116
LE + W SGF+ + + + + + G Y +A+S VSAL + +G +HVLD
Sbjct: 63 LEPIPWCESGFWITADEEQVPLGNTAEHMAGLFYIQEASSMMPVSALFMQSGAPFEHVLD 122
Query: 117 LCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF-S 175
+ AAPG+K I ++ + G + + + R+ +++ + + L DG F
Sbjct: 123 MAAAPGSKTTQIAALMDNQGVLIANEYSASRVKILHANIERCGIRNSA-LTNFDGQIFGG 181
Query: 176 LAPLRL---LLD-PGSCNSVLQEKDDTFREWT 203
P + LLD P S +++ D + W+
Sbjct: 182 WLPEQFDAVLLDAPCSGEGTVRKDPDAMKNWS 213
>gi|423092860|ref|ZP_17080656.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens Q2-87]
gi|397882733|gb|EJK99220.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
fluorescens Q2-87]
Length = 436
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ G I D A+ A L ++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FVDGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHILEAEPKLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL + L + LG LF ADG T + P R+LLD P S V++ D
Sbjct: 280 RLVRVKENLTR--LGLDAELFAADGRDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|319947546|ref|ZP_08021776.1| RNA methyltransferase Sun [Streptococcus australis ATCC 700641]
gi|319746234|gb|EFV98497.1| RNA methyltransferase Sun [Streptococcus australis ATCC 700641]
Length = 440
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
A S +KQGK+ D S AL + D VLD CAAPG K + + D G VT
Sbjct: 220 FAGSDYFKQGKLTIQDETSQLVAPALEVQPSDQVLDACAAPGGKTTHLASYLVD-GQVTA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCR 165
+D+ H+L + ++ + D+ +
Sbjct: 279 LDLYDHKLQLIQENAERLGVADKIQ 303
>gi|375131011|ref|YP_004993111.1| ribosomal RNA small subunit methyltransferase F [Vibrio furnissii
NCTC 11218]
gi|315180185|gb|ADT87099.1| Ribosomal RNA small subunit methyltransferase F (rRNA
(cytosine-C(5)-)-methyltransferase rsmF) (16S rRNA
m5C1407 methyltransferase) [Vibrio furnissii NCTC 11218]
Length = 474
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 21/213 (9%)
Query: 10 SKLPLPEAFLDFLKE---NGLDPSVYSAADSTP-----RYIRLKTGNEADLEEIEAELKC 61
S + LPEAFL + E + L+ + AA P R LK EA L + E
Sbjct: 3 SNISLPEAFLSTMAEILPSSLNMDDFIAACQRPLRKSIRVNTLKVSVEAFLSRAK-EKGW 61
Query: 62 KLEKVVWL-SGFY--SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAG---DHVL 115
LE V W +GF+ + D+ + + + G Y +A+S VSAL + A D VL
Sbjct: 62 MLEAVPWCDTGFWIDADESDVPLGNTAEHMAGLFYIQEASSMMPVSALFMDASERFDAVL 121
Query: 116 DLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF- 174
D+ AAPG+K I ++ ++G + + + R+ +++ + + L DG F
Sbjct: 122 DMAAAPGSKTTQIAALMNNAGILVANEFSASRVKVLHANIERCGIRNTA-LSNFDGRVFG 180
Query: 175 SLAPLRL---LLD-PGSCNSVLQEKDDTFREWT 203
P + L+D P S +++ D + W+
Sbjct: 181 GWLPEQFDAVLIDAPCSGEGTIRKDPDAMKNWS 213
>gi|237801648|ref|ZP_04590109.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. oryzae str.
1_6]
gi|331024507|gb|EGI04563.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. oryzae str.
1_6]
Length = 441
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L ++ G VLD C APG K C +L+ G V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEAQPQLGGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L AD T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLDR--LGLNAELIAADARDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|107099010|ref|ZP_01362928.1| hypothetical protein PaerPA_01000017 [Pseudomonas aeruginosa PACS2]
gi|218888763|ref|YP_002437627.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa LESB58]
gi|451983639|ref|ZP_21931915.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas
aeruginosa 18A]
gi|218768986|emb|CAW24744.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa LESB58]
gi|451758585|emb|CCQ84438.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas
aeruginosa 18A]
Length = 434
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ D A+ A L + G VLD C APG K C +L+ V VD+
Sbjct: 220 FAEGRVSVQDEAAQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEES 279
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R LQ+ LG + L AD G + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLQR--LGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|385812511|ref|YP_005848902.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
fermentum CECT 5716]
gi|299783408|gb|ADJ41406.1| Ribosomal RNA small subunit methyltransferase B [Lactobacillus
fermentum CECT 5716]
Length = 448
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ + A+K G + D ++ AV +++++ + VLD CAAPG K I + + D G V
Sbjct: 226 VLKTAAFKNGVVTIQDESAMLAVESMHLTGHERVLDACAAPGGKTVQIAEALTD-GEVYA 284
Query: 141 VDVARHRLAACRTLLQKYALGDRC 164
+D+ RH++ Q+ + DR
Sbjct: 285 LDIHRHKVGLIEKNAQRMGVDDRV 308
>gi|386062989|ref|YP_005978293.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa NCGM2.S1]
gi|348031548|dbj|BAK86908.1| putative tRNA and rRNA cytosine-C5-methylases [Pseudomonas
aeruginosa NCGM2.S1]
Length = 434
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ D A+ A L + G VLD C APG K C +L+ V VD+
Sbjct: 220 FAEGRVSVQDEAAQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEES 279
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R LQ+ LG + L AD G + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLQR--LGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|329117416|ref|ZP_08246133.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parauberis NCFD 2020]
gi|326907821|gb|EGE54735.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parauberis NCFD 2020]
gi|456369414|gb|EMF48314.1| Ribosomal RNA small subunit methyltransferase B [Streptococcus
parauberis KRS-02109]
gi|457094763|gb|EMG25276.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
parauberis KRS-02083]
Length = 440
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 38 TPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDA 97
TP ++ ++ +++++ EL+ +K V LS A+S A+ +GK+ D
Sbjct: 180 TPSKASIRVTDDVSIDQLQEELEA--DKSV-LSPVGLTKSSGHFASSQAFAEGKVTVQDE 236
Query: 98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157
+S L I D++LD C+APG K + + SG VT +D+ H+L ++
Sbjct: 237 SSQLVAPTLEIKQDDNILDACSAPGGKAVHMASYLT-SGKVTALDIYDHKLELVVENAKR 295
Query: 158 YALGDRCRLFVADG 171
L +R V D
Sbjct: 296 LGLSERIDTQVLDA 309
>gi|260598310|ref|YP_003210881.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Cronobacter
turicensis z3032]
gi|260217487|emb|CBA31639.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
turicensis z3032]
Length = 480
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 105/225 (46%), Gaps = 24/225 (10%)
Query: 14 LPEAFLDFLKEN---GLDPSVYSAADSTP--RYIR---LKTGNEADLEEIEAELKCKLEK 65
LPEAFLD +++ GL + AA P R IR LK EA L ++ A +L
Sbjct: 9 LPEAFLDVMRDAMPAGLAMDDFIAACQRPLRRSIRVNTLKISVEAFLAQV-APYGWQLTP 67
Query: 66 VVWL-SGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCA 119
V W GF+ D + + ++ + G+ Y +A+S V+AL + +A V+D+ A
Sbjct: 68 VPWCPEGFWIEREDEDALPLGSTAEHLSGQFYIQEASSMLPVAALFADNNAPARVMDVAA 127
Query: 120 APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA-P 178
APG+K I ++ + G + + + R+ + + + + L DG F A P
Sbjct: 128 APGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGIRN-VGLTHFDGRVFGAALP 186
Query: 179 LR---LLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARE 219
+ +LLD P S V+++ D R W+ P ++ A RE
Sbjct: 187 EQFDAILLDAPCSGEGVVRKDPDALRNWS---PQSNQEIAATQRE 228
>gi|387593782|gb|EIJ88806.1| hypothetical protein NEQG_00625 [Nematocida parisii ERTm3]
gi|387595088|gb|EIJ92714.1| hypothetical protein NEPG_02405 [Nematocida parisii ERTm1]
Length = 559
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
+A S V AL++ + VLD+CA+PG+K IL+++G+ ++ DV R+A
Sbjct: 125 EAVSMLPVFALDVKSDSIVLDMCASPGSKSSQILEVLGEDSTLICNDVNSRRVAQLIKQT 184
Query: 156 QKYALGDRCRLFVADGTTF---SLAPLRLLLD-PGSCNSVLQEKDDTFREW 202
+++ + + D T + + P R+L D P S + +++ F++W
Sbjct: 185 KRF-MHPGLVITCNDATVYPRCGITPNRILCDVPCSGDGTIRKNRHIFQKW 234
>gi|422652052|ref|ZP_16714841.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. actinidiae
str. M302091]
gi|330965124|gb|EGH65384.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. actinidiae
str. M302091]
Length = 448
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L +S G VLD C APG K C +L++ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLELSPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVA---------DGTTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL R L++ LG L A DG F R+LLD P S V++
Sbjct: 280 RLVRVRENLER--LGLEAELIAADARDTAQWWDGKPFQ----RILLDAPCSATGVIRRHP 333
Query: 197 D 197
D
Sbjct: 334 D 334
>gi|313111462|ref|ZP_07797263.1| putative tRNA and rRNA cytosine-C5-methylase [Pseudomonas
aeruginosa 39016]
gi|310883765|gb|EFQ42359.1| putative tRNA and rRNA cytosine-C5-methylase [Pseudomonas
aeruginosa 39016]
Length = 434
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ D A+ A L + G VLD C APG K C +L+ V VD+
Sbjct: 220 FAEGRVSVQDEAAQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVVAVDLEES 279
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R LQ+ LG + L AD G + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLQR--LGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|358419347|ref|XP_593209.4| PREDICTED: putative methyltransferase NSUN5 [Bos taurus]
gi|359080487|ref|XP_002698734.2| PREDICTED: putative methyltransferase NSUN5 [Bos taurus]
Length = 395
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y+ G + D AS L G HV+D CAAPG K + ++ + G + D
Sbjct: 136 YQAGHLILQDKASCLPAMLLAPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDQDAK 195
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSCNSVLQEKDDTFR 200
RLA+ TLL + + C L D S + R +LLDP S + +
Sbjct: 196 RLASMATLLARAGV-SCCELAEQDFLAVSPSDQRYCQVQYILLDPSCSGSGMPSRQ--LE 252
Query: 201 EWTSRIPWKERKRAVKA-RENAASKAIV 227
E S P ER RA+ A ++ A S A+
Sbjct: 253 EPKSCTPSPERLRALAAFQQRALSHALT 280
>gi|448237330|ref|YP_007401388.1| ribosomal RNA small subunit methyltransferase B [Geobacillus sp.
GHH01]
gi|445206172|gb|AGE21637.1| ribosomal RNA small subunit methyltransferase B [Geobacillus sp.
GHH01]
Length = 444
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 22/122 (18%)
Query: 37 STPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDI----------KIATSMA 86
ST R RL+ E LE + AE G ++P + +A +
Sbjct: 177 STARVNRLRATVEEALERLRAE------------GMQAIPGHVAPEAIRAEKGNLAHTET 224
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
++ G + D +S AL+ + G+ VLD CAAPG K I + +G G V VD+ H
Sbjct: 225 FRAGWLTIQDESSMLVARALDPAPGERVLDCCAAPGGKTTHIAERMGGRGEVVAVDIHEH 284
Query: 147 RL 148
++
Sbjct: 285 KV 286
>gi|420143339|ref|ZP_14650840.1| rRNA methylase [Lactococcus garvieae IPLA 31405]
gi|391856858|gb|EIT67394.1| rRNA methylase [Lactococcus garvieae IPLA 31405]
Length = 423
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
A S A+ +GKI D S L+++ + VLD CAAPG K I + D+G VT
Sbjct: 203 FAHSQAFIEGKITIQDETSQLVAPQLDLTGSERVLDACAAPGGKTTHIAQYL-DTGHVTA 261
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175
D+ H+L ++ + ++ AD T +
Sbjct: 262 CDLYDHKLKLIEDNAERQGVWEKITTVKADATQLA 296
>gi|430749701|ref|YP_007212609.1| tRNA/rRNA cytosine-C5-methylase [Thermobacillus composti KWC4]
gi|430733666|gb|AGA57611.1| tRNA/rRNA cytosine-C5-methylase [Thermobacillus composti KWC4]
Length = 497
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 86/214 (40%), Gaps = 25/214 (11%)
Query: 7 GEISKLPLPEAFLDFLKEN-GLDPSVYSAADSTPRY--IRLKTGNEADL--EEIEAELKC 61
G + PLP AF+ ++ G + + A PR +RL ADL E +
Sbjct: 35 GAADRPPLPAAFVRRMEALLGEEAGAFLRAYGEPRAYGLRLNGRKLADLRLEPDKLHRMI 94
Query: 62 KLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
LE V W G + P+ + + G Y + ++ +A L G+ VLDL AAP
Sbjct: 95 GLEPVPWCPGGFYYAPESRPGRHPYHAAGLYYIQEPSAMSAAELLAPQPGELVLDLAAAP 154
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRL 181
G K I D + G + ++ R R L + R+ +A+ + P RL
Sbjct: 155 GGKATQIADRLAGQGLLVANEIHPAR---ARVLSENIE-----RMGIANAVVTNEPPDRL 206
Query: 182 -----------LLD-PGSCNSVLQEKDDTFREWT 203
+LD P S + ++ D REW+
Sbjct: 207 AKRFPAYFDAVMLDAPCSGEGMFRKDPDAVREWS 240
>gi|90578629|ref|ZP_01234439.1| putative sun/nucleolar protein family protein [Photobacterium
angustum S14]
gi|90439462|gb|EAS64643.1| putative sun/nucleolar protein family protein [Photobacterium
angustum S14]
Length = 476
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 101/212 (47%), Gaps = 21/212 (9%)
Query: 11 KLPLPEAFLDFLKEN---GLDPSVYSAADSTP--RYIRLKTGNEADLEEIEAELKCK--- 62
+ +P+AF+D +K+ LD + A TP R IR+ T + +E+ A + +
Sbjct: 4 NIHIPDAFIDLIKQTMPEHLDIDEFIACCKTPLRRSIRVNT-LKISVEDFLARVANRGWT 62
Query: 63 LEKVVWL-SGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLD 116
L V W +GF+ D + + + + G Y +A+S V+AL + A D VLD
Sbjct: 63 LTPVPWCDTGFWIEREDEDTVSLGNTAEHMAGLFYIQEASSMMPVTALLKDNDALDCVLD 122
Query: 117 LCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF-S 175
+ +APG+K I + + G++ ++A R+ + LQ+ + + L DG F +
Sbjct: 123 MASAPGSKTTQIASAMQNRGALVANELAASRIKVLHSNLQRCGVHN-AALTHFDGCVFGT 181
Query: 176 LAPL---RLLLD-PGSCNSVLQEKDDTFREWT 203
AP +LLD P S +++ +D W+
Sbjct: 182 WAPESFDSILLDAPCSGEGAIRKDEDAMANWS 213
>gi|20093882|ref|NP_613729.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
gi|19886817|gb|AAM01659.1| tRNA/rRNA cytosine-C5-methylase [Methanopyrus kandleri AV19]
Length = 452
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 65/147 (44%), Gaps = 13/147 (8%)
Query: 78 DIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGS 137
D+ + Y++G + D AS AA AL GD VLD CAAPG K + +
Sbjct: 224 DVPPVRTEPYRRGWVAYQDKASAAAAYALRPEPGDRVLDACAAPGGKSAYLYALTEGEIE 283
Query: 138 VTGVDVARHRLAACRTLLQKYAL------GDRCRLFVADGTTFSLAPLRLLLDPGSCNSV 191
+T VDV RL R +++ + D RL+ TF LA L+DP C+S
Sbjct: 284 LTCVDVNPRRLREMRRNFRRWGIEARLRRADSSRLYRETDETFDLA----LVDP-PCSSS 338
Query: 192 LQEKDDTFREWTSRIPWKERKRAVKAR 218
+WT + W+ KR + +
Sbjct: 339 GAYVRAPEAKWT--VKWRHVKRYARGQ 363
>gi|260437130|ref|ZP_05790946.1| NOL1/NOP2/sun family protein [Butyrivibrio crossotus DSM 2876]
gi|292810442|gb|EFF69647.1| NOL1/NOP2/sun family protein [Butyrivibrio crossotus DSM 2876]
Length = 448
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 89/204 (43%), Gaps = 10/204 (4%)
Query: 12 LPLPEAFLDFLKE---NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVW 68
+ LPE +++ +KE + D + S + +R+ T + +E+ +E++ W
Sbjct: 1 MQLPEKYVNSMKELLADEFDSYMESFNEKRLYGLRVNTA-KISVEDFMKICPFHIERIPW 59
Query: 69 L-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
+ +GFY D K A Y G Y + ++ L ++ GD VLDLCAAPG K
Sbjct: 60 IPNGFYYSEND-KPAKHPYYFAGLYYLQEPSAMTPAYVLPVNKGDKVLDLCAAPGGKSTE 118
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD---RCRLFVADGTTFSLAPLRLLLD 184
+ + +G + D++ R A ++ + +G+ C F ++L+D
Sbjct: 119 LGAKLSGTGLLVSNDISASRAKALVKNIEVFGIGNVVITCEYPEKLAAKFPEFFDKILVD 178
Query: 185 -PGSCNSVLQEKDDTFREWTSRIP 207
P S + ++ + + W P
Sbjct: 179 APCSGEGMFRKDNKLIKSWEQEGP 202
>gi|156396524|ref|XP_001637443.1| predicted protein [Nematostella vectensis]
gi|156224555|gb|EDO45380.1| predicted protein [Nematostella vectensis]
Length = 464
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 61/153 (39%), Gaps = 18/153 (11%)
Query: 23 KENGLDPSVYSAADSTPRYIRLKTG-NEAD-----LEEIEAELKCKLEKVVWLSG----- 71
+ L P A + PRY R+ T AD +E L +K +++ G
Sbjct: 117 RNKDLLPKSVQTAGTIPRYARINTLLTTADKVIKHFQEESYHLVPSTDKRLYVEGSKIFA 176
Query: 72 -------FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAK 124
PP + Y G I D AS +++ G HV+D CAAPG K
Sbjct: 177 QDPHIPEVLVFPPSTDLHDHTLYINGHILLQDKASCLPAHVISLPPGAHVIDACAAPGNK 236
Query: 125 LCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157
+ + ++G V D++ RLA + ++K
Sbjct: 237 SSHLAAKLNNNGRVFSFDISASRLAVMQKQMKK 269
>gi|148926623|ref|ZP_01810304.1| NOL1\NOP2\sun family protein [Campylobacter jejuni subsp. jejuni
CG8486]
gi|145845142|gb|EDK22237.1| NOL1\NOP2\sun family protein [Campylobacter jejuni subsp. jejuni
CG8486]
Length = 232
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 78 DIKIATSM-AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSG 136
D I +SM + + Y + +S L + AG VLD+CAAPG K + + + ++G
Sbjct: 6 DKAILSSMKVFNEAHFYIQNYSSYLCALNLEVKAGQRVLDMCAAPGGKSINLANFMQNTG 65
Query: 137 SVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF-SLAPL---RLLLD 184
+ +++R R + L+ Y G ++F+ DG +L PL ++LLD
Sbjct: 66 YLACNEMSRDRFFILQKNLKNY--GVNAKVFMKDGKNIGNLCPLKFDKILLD 115
>gi|261342758|ref|ZP_05970616.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
cancerogenus ATCC 35316]
gi|288314937|gb|EFC53875.1| ribosomal RNA small subunit methyltransferase B [Enterobacter
cancerogenus ATCC 35316]
Length = 428
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 75/166 (45%), Gaps = 33/166 (19%)
Query: 69 LSGFY--SLPPDIKIATSM------AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
+SGF + P +++A+ +++G + DA++ ++ L G+ +LDLCAA
Sbjct: 196 MSGFIHEAYPDAVRLASPAPVHALPGFEEGWVTVQDASAQGCMTWLEPKNGEKILDLCAA 255
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG--------- 171
PG K IL+ + V VDV RL+ L++ LG + ++ DG
Sbjct: 256 PGGKTTHILE-VAPQADVLAVDVDEQRLSRVYDNLKR--LGMKAQVKQGDGRTPADWCGN 312
Query: 172 TTFSLAPLRLLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVK 216
T F R+LLD P S V++ D I W R R +K
Sbjct: 313 TQFD----RILLDAPCSATGVIRRHPD--------IKWLRRDRDIK 346
>gi|169349816|ref|ZP_02866754.1| hypothetical protein CLOSPI_00554 [Clostridium spiroforme DSM 1552]
gi|169293384|gb|EDS75517.1| ribosomal RNA small subunit methyltransferase B [Clostridium
spiroforme DSM 1552]
Length = 481
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA S +K+G + D +S L+ S D VLD+C APG+K + ++ + G +
Sbjct: 274 IAESTYFKEGLVTIQDESSQLVAPLLSPSEDDLVLDMCCAPGSKTTHLAALMNNKGKIIA 333
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL-----RLLLD-PGSCNSVLQE 194
D+ H++ + L++ + + L D TT L ++LLD P S V++
Sbjct: 334 CDLFEHKIKLVKENLKRLNISN-VELHAIDATTLKEKYLEGTFDKILLDAPCSGLGVMKR 392
Query: 195 K 195
K
Sbjct: 393 K 393
>gi|344344899|ref|ZP_08775758.1| sun protein [Marichromatium purpuratum 984]
gi|343803593|gb|EGV21500.1| sun protein [Marichromatium purpuratum 984]
Length = 447
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ DA + A L + G VLD CAAPG K IL+ G ++T +DV
Sbjct: 234 FVEGRVSVQDAGAQLAAELLEAAPGTRVLDACAAPGGKSAAILERAGGELALTALDVDGE 293
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFS---LAP--LRLLLD-PGSCNSVLQEKDDTFR 200
RL + LL + LG R L AD AP R+LLD P S V++ D
Sbjct: 294 RLQSVAALLDR--LGLRATLVEADAARPEGDWAAPGFERILLDVPCSATGVIRRHPDI-- 349
Query: 201 EWTSR 205
+W R
Sbjct: 350 KWLRR 354
>gi|260768468|ref|ZP_05877402.1| ribosomal RNA small subunit methyltransferase F [Vibrio furnissii
CIP 102972]
gi|260616498|gb|EEX41683.1| ribosomal RNA small subunit methyltransferase F [Vibrio furnissii
CIP 102972]
Length = 474
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 96/213 (45%), Gaps = 21/213 (9%)
Query: 10 SKLPLPEAFLDFLKE---NGLDPSVYSAADSTP-----RYIRLKTGNEADLEEIEAELKC 61
S + LPEAFL + E + L+ + AA P R LK EA L + E
Sbjct: 3 SNISLPEAFLSTMAEILPSSLNMDDFIAACQRPLRKSIRVNTLKISVEAFLSRAK-EKGW 61
Query: 62 KLEKVVWL-SGFY--SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAG---DHVL 115
LE V W +GF+ + D+ + + + G Y +A+S VSAL + A D VL
Sbjct: 62 MLEAVPWCDTGFWIDADESDVPLGNTAEHMAGLFYIQEASSMMPVSALFMDASERFDAVL 121
Query: 116 DLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF- 174
D+ AAPG+K I ++ ++G + + + R+ +++ + + L DG F
Sbjct: 122 DMAAAPGSKTTQIAALMNNAGILVANEFSASRVKVLHANIERCGIRNTA-LSNFDGRVFG 180
Query: 175 SLAPLRL---LLD-PGSCNSVLQEKDDTFREWT 203
P + L+D P S +++ D + W+
Sbjct: 181 GWLPEQFDAVLIDAPCSGEGTIRKDPDAMKNWS 213
>gi|426255336|ref|XP_004021307.1| PREDICTED: putative methyltransferase NSUN5 [Ovis aries]
Length = 501
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 10/148 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y+ G + D AS L G HV+D CAAPG K + ++ + G + D
Sbjct: 191 YQAGHLILQDKASCLPAMLLAPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDQDAK 250
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSCNSVLQEKDDTFR 200
RLA+ TLL + C L D T S + R +LLDP S + +
Sbjct: 251 RLASMATLLALAGVSC-CELAEQDFLTVSPSDQRYCQVQYILLDPSCSGSGMPSRQ--LE 307
Query: 201 EWTSRIPWKERKRAVKA-RENAASKAIV 227
E + +P ER RA+ A ++ A S A+
Sbjct: 308 EPKAGMPSPERLRALAAFQQRALSHALT 335
>gi|421167537|ref|ZP_15625720.1| hypothetical protein PABE177_2544 [Pseudomonas aeruginosa ATCC
700888]
gi|404534225|gb|EKA43978.1| hypothetical protein PABE177_2544 [Pseudomonas aeruginosa ATCC
700888]
Length = 434
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ D A+ A L + G VLD C APG K C +L+ V VD+
Sbjct: 220 FAEGRVSVQDEAAQLAAELLESAPGQRVLDACCAPGGKTCHLLETQPGLAEVIAVDLEES 279
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R LQ+ LG + L AD G + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLQR--LGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|322371799|ref|ZP_08046342.1| tRNA and rRNA cytosine-C5-methylase [Haladaptatus paucihalophilus
DX253]
gi|320548684|gb|EFW90355.1| tRNA and rRNA cytosine-C5-methylase [Haladaptatus paucihalophilus
DX253]
Length = 301
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 89 QGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRL 148
G +G + S L+ G+ VLD CAAPG+K + ++ D+G V D RL
Sbjct: 76 HGWTHGQEEVSSIPAFVLDPEPGERVLDSCAAPGSKTTQLAALMDDTGLVVANDSNLGRL 135
Query: 149 AACRTLLQKYALGDRCRLFV-ADGTTFSLAPLRL------LLD-PGSCNSVLQEKDDTFR 200
+A R ++ LG C D FSL P L L+D P SC +++
Sbjct: 136 SALRFNTER--LGVTCAAVTNQDARNFSLKPFGLSAFDAALVDVPCSCEGTVRKNPTALD 193
Query: 201 EW 202
+W
Sbjct: 194 DW 195
>gi|351705362|gb|EHB08281.1| Putative methyltransferase NSUN5 [Heterocephalus glaber]
Length = 496
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 78/209 (37%), Gaps = 29/209 (13%)
Query: 35 ADSTPRYIRLKT--------------------GNEADLEEIEAELKCKLEKVVWLSGFYS 74
A PR++R+ T G + LE++ A L
Sbjct: 165 ASQVPRFVRVNTLKTCPDDAVDYFKRKGFSYQGRASSLEDLRALKGKHFFLDPLLPELLV 224
Query: 75 LPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD 134
P + Y+ G + D AS L G HV+D CAAPG K + ++ +
Sbjct: 225 FPAQTDLHEHPLYQAGHLILQDKASCLPAMLLAPPPGSHVIDACAAPGNKTSHLAALLKN 284
Query: 135 SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSC 188
G + D+ RLA+ TLL + + C L D S + R +LLDP
Sbjct: 285 QGKIFAFDLDAKRLASMATLLARAGVSC-CELAEEDFLAVSPSDTRYARVQYILLDPSCS 343
Query: 189 NSVLQEKDDTFREWTSRIPWKERKRAVKA 217
S + + E + +P KER A+ A
Sbjct: 344 GSGMLSRQ--LEEPGAELPSKERLCALAA 370
>gi|363750830|ref|XP_003645632.1| hypothetical protein Ecym_3325 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889266|gb|AET38815.1| Hypothetical protein Ecym_3325 [Eremothecium cymbalariae
DBVPG#7215]
Length = 496
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 28/182 (15%)
Query: 35 ADSTP-RYIRLKTGN-EADLEEIEAELKCKLEKVV---------------WLSGFYSLPP 77
AD +P R+IR+ + ++++ EL+ K K V ++ Y + P
Sbjct: 160 ADMSPVRWIRINPFRCQGKVDDVLKELRKKFPKQVDDWTQIVPGSIYRDEYIPNLYGVHP 219
Query: 78 DIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGS 137
KI + YK+GKI D AS LN + D V+D C+APG K I I G+
Sbjct: 220 SDKITSHELYKRGKIIIQDRASCFPAYILNPTPHDVVIDACSAPGNKTTHIAAHIFPDGN 279
Query: 138 VTGVDV-ARHRLAACRTLLQKYALGDRC----RLFVADGTTFSLAPLR-----LLLDPGS 187
+ V + A R A +L+K C ++ V D T + + +LDP S
Sbjct: 280 ASDVKIYAFERDAKRAEILEKMVTSAGCESCIQISVGDFTQLAKPQMFKDVTGFILDP-S 338
Query: 188 CN 189
C+
Sbjct: 339 CS 340
>gi|390365596|ref|XP_787860.2| PREDICTED: putative methyltransferase NSUN5-like
[Strongylocentrotus purpuratus]
Length = 617
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 13/126 (10%)
Query: 36 DSTPRYI-RLKTGNEADLEEIEAELKCKLEKVVWLSG---FYSLPPDIKIATSMAYKQGK 91
D+TP+YI L L + E L+ V+ + F+S P Y QG
Sbjct: 180 DATPKYISNLSVDVSRSLGQYEFATDLHLDDVLVFAARTDFHSHP---------LYLQGH 230
Query: 92 IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAAC 151
I +D AS L+ G HV+D C+APG K + ++ + + D+ R++
Sbjct: 231 IILMDKASCFPAYVLSAKPGSHVIDACSAPGNKTSHMASLLRNDAKIYSYDLDPKRISVM 290
Query: 152 RTLLQK 157
TLL++
Sbjct: 291 NTLLER 296
>gi|373456730|ref|ZP_09548497.1| RNA methylase, NOL1/NOP2/sun family [Caldithrix abyssi DSM 13497]
gi|371718394|gb|EHO40165.1| RNA methylase, NOL1/NOP2/sun family [Caldithrix abyssi DSM 13497]
Length = 466
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 35 ADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGF--YSLPPD--------IKIATS 84
A PR IR+ T ++ AE+K +LE+ W F S P+ + ++ +
Sbjct: 26 ARPEPRAIRVNT-----IKTTVAEVKKRLEQ--WNVPFRPVSFNPEGLIIEDDHMPLSQT 78
Query: 85 MAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVA 144
+ + GK Y +S LN GD VLDL A+PG+K + ++ ++G + DV+
Sbjct: 79 LDFFLGKFYYQGVSSQLPAVVLNPQKGDKVLDLAASPGSKSTQMAAMMDNTGFLVLNDVS 138
Query: 145 RHRLAACRTLLQ 156
R+ A T +Q
Sbjct: 139 MKRIQALNTNIQ 150
>gi|345887954|ref|ZP_08839090.1| hypothetical protein HMPREF0178_01864 [Bilophila sp. 4_1_30]
gi|345041286|gb|EGW45463.1| hypothetical protein HMPREF0178_01864 [Bilophila sp. 4_1_30]
Length = 422
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%)
Query: 79 IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSV 138
+ S+A G IY D +S AL G VLD+CA+PG+K ++ ++G G V
Sbjct: 51 FPLGRSLAAFWGYIYIQDRSSMLPPLALAPGEGARVLDMCASPGSKTGLLAQLVGREGLV 110
Query: 139 TGVDVARHRLAACR 152
G + AR RLA R
Sbjct: 111 LGNEPARPRLANLR 124
>gi|339624615|ref|ZP_08660404.1| 16S rRNA methyltransferase B [Fructobacillus fructosus KCTC 3544]
Length = 448
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAG-DHVLDLCAAPGAKLCMILDIIGDSGSVT 139
+A+S AY++G + D ++ V A++I G VLD AAPG K I + + VT
Sbjct: 225 VASSKAYQEGLLTVQDESAMLPVEAMHIDQGVRSVLDAAAAPGGKTTQIAQDLPEGAFVT 284
Query: 140 GVDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+D+ RH++ + L DR R D
Sbjct: 285 ALDIHRHKVQLIAQNAARLGLADRVRAMEMDA 316
>gi|422643834|ref|ZP_16706973.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. maculicola
str. ES4326]
gi|330957387|gb|EGH57647.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. maculicola
str. ES4326]
Length = 441
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L ++ G VLD C APG K C +L++ +V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSAVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVA---------DGTTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL R L + LG L A DGT F R+LLD P S V++
Sbjct: 280 RLVRVRENLDR--LGLDAELIAADARDTASWWDGTPFQ----RILLDAPCSATGVIRRHP 333
Query: 197 D 197
D
Sbjct: 334 D 334
>gi|110598393|ref|ZP_01386666.1| sun protein:transcription antitermination factor NusB [Chlorobium
ferrooxidans DSM 13031]
gi|110340002|gb|EAT58504.1| sun protein:transcription antitermination factor NusB [Chlorobium
ferrooxidans DSM 13031]
Length = 447
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 59/140 (42%), Gaps = 15/140 (10%)
Query: 40 RYIRLKTGNEA----DLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGI 95
R RLKT E L A C +E + F + P A G++
Sbjct: 184 RINRLKTSEEQLFSDPLFSSAAYEACGIENLFISKEFSTFEP--------AVSDGRLTVQ 235
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
+ A LN G VLDLCAAPG K + +++G++GSVT +D+ +L T
Sbjct: 236 NPTQALACLLLNPVPGSAVLDLCAAPGGKSTFMAELMGNNGSVTSLDLYEQKLLKITT-- 293
Query: 156 QKYALG-DRCRLFVADGTTF 174
ALG R AD +F
Sbjct: 294 HAEALGITIIRTVAADARSF 313
>gi|429217623|ref|YP_007175613.1| tRNA/rRNA cytosine-C5-methylase [Caldisphaera lagunensis DSM 15908]
gi|429134152|gb|AFZ71164.1| tRNA/rRNA cytosine-C5-methylase [Caldisphaera lagunensis DSM 15908]
Length = 330
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 62 KLEKVVWL-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
K++K+ +L G+ + K+ + Y G Y D S V +N ++D+ +A
Sbjct: 82 KIKKIPFLPHGYEIISSPYKVGATHEYLMGYYYLQDPGSMLVVYLMNPKKNSFIIDMASA 141
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL--AP 178
PG K IL + D+ + V++ + R+ + R+ LQ+ L + D SL A
Sbjct: 142 PGGKSSQILQLTKDNVKLVSVELKKDRIKSLRSNLQRMGFSSYIILEI-DARKLSLKDAD 200
Query: 179 LRLLLDPGSCNSVLQE 194
+ LL P S ++++
Sbjct: 201 MILLDSPSSGEGIIRK 216
>gi|326435915|gb|EGD81485.1| hypothetical protein PTSG_02202 [Salpingoeca sp. ATCC 50818]
Length = 510
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 67/170 (39%), Gaps = 28/170 (16%)
Query: 14 LPEAFLDFLKENGLDPSVYSA----ADSTPRYIR---LKTGNEADLEEIEAELKCKLEKV 66
L A D + E G+D + A A+S PRY R LK A L +E E +L+++
Sbjct: 102 LQTALADLMAERGVDTASALAEDTLAESMPRYARVNPLKQPEAATLTALE-ETGFQLQQL 160
Query: 67 --------------------VWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSAL 106
L P T Y++G + D AS + L
Sbjct: 161 HAAGPKSTTTLESRQHYFKDTHLDNLLGFHPRTDFHTHWLYRRGHLILQDKASCFPAAIL 220
Query: 107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156
G +D CAAPG K + ++ + G+V D++R R+ R L+
Sbjct: 221 APPPGSVCIDACAAPGNKTSHLAALMHNKGTVFAFDISRRRMGVMRRQLK 270
>gi|284161697|ref|YP_003400320.1| RNA methylase [Archaeoglobus profundus DSM 5631]
gi|284011694|gb|ADB57647.1| RNA methylase, NOL1/NOP2/sun family [Archaeoglobus profundus DSM
5631]
Length = 305
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 7/129 (5%)
Query: 49 EADLEEIEAEL--KCKLEKVVWLS-GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSA 105
+A +E++ + L + KLE + W GF+S D ++ ++ ++ G I+ +A+S
Sbjct: 43 KASVEDVVSSLSDRFKLEPIPWCKEGFFS---DKEVGRTIEHQIGVIFSQEASSMIPAIV 99
Query: 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR 165
L+ VLD+CA+PG K I + + G + DV R+ + LQ+ + R
Sbjct: 100 LDPKPNMLVLDMCASPGGKTTQIAQYMKNEGCIVANDVKYDRINILISNLQRCGVT-IAR 158
Query: 166 LFVADGTTF 174
+ + DG F
Sbjct: 159 VTMKDGRFF 167
>gi|358067541|ref|ZP_09154019.1| ribosomal RNA small subunit methyltransferase B [Johnsonella ignava
ATCC 51276]
gi|356694194|gb|EHI55857.1| ribosomal RNA small subunit methyltransferase B [Johnsonella ignava
ATCC 51276]
Length = 455
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 18/150 (12%)
Query: 11 KLPLPEAFLDFLKE--NGLDPSVYSAA--DSTPRYIRLKTGNEADLEEIEAELKCKLE-- 64
K +PE +D L++ N D A +P IR+ N E +E +E
Sbjct: 145 KYSMPEWIMDLLEKRFNHTDTLAICEAFLAKSPLSIRINISNTCTGEVVEKLKDSGIEVS 204
Query: 65 ------KVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLC 118
+++++SGF +L ++ AY Q D S I GD V+DLC
Sbjct: 205 YSDFFDELIYISGFDNLAGLGVLSGKEAYIQ------DLGSFIVTKMAGIKQGDTVVDLC 258
Query: 119 AAPGAKLCMILDIIGDSGSVTGVDVARHRL 148
AAPG K DI+ SG V D++ ++L
Sbjct: 259 AAPGGKTIHAADILNGSGKVLAFDLSENKL 288
>gi|354580541|ref|ZP_08999446.1| RNA methylase, NOL1/NOP2/sun family [Paenibacillus lactis 154]
gi|353202972|gb|EHB68421.1| RNA methylase, NOL1/NOP2/sun family [Paenibacillus lactis 154]
Length = 534
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 62/152 (40%), Gaps = 8/152 (5%)
Query: 62 KLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
KL+ + W Y + + Y G Y + ++ A V L + GD VLDLCAAP
Sbjct: 55 KLDPIPWCKTGYYIEEGERPGRHPYYHAGLYYIQEPSAMAPVELLGVEPGDVVLDLCAAP 114
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD-----GTTFSL 176
G K I + G + D+ R A L+ Y G R + + D F
Sbjct: 115 GGKSTQIAAKLQGKGVLVSNDLHPDRTKALAKNLEMY--GVRNAIVLNDSPERIAEAFPE 172
Query: 177 APLRLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
A ++L+D P S + ++ + + W P
Sbjct: 173 AFTKILIDAPCSGEGMFRKDESMLKYWEESSP 204
>gi|333905489|ref|YP_004479360.1| 16S rRNA m(5)C 967 methyltransferase, partial [Streptococcus
parauberis KCTC 11537]
gi|333120754|gb|AEF25688.1| 16S rRNA m(5)C 967 methyltransferase [Streptococcus parauberis KCTC
11537]
Length = 287
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 38 TPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDA 97
TP ++ ++ +++++ EL+ +K V LS A+S A+ +GK+ D
Sbjct: 27 TPSKASIRVTDDVSIDQLQEELEA--DKSV-LSPVGLTKSSGHFASSQAFAEGKVTVQDE 83
Query: 98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157
+S L I D++LD C+APG K + + SG VT +D+ H+L ++
Sbjct: 84 SSQLVAPTLEIKQDDNILDACSAPGGKAVHMASYLT-SGKVTALDIYDHKLELVVENAKR 142
Query: 158 YALGDRCRLFVADG 171
L +R V D
Sbjct: 143 LGLSERIDTQVLDA 156
>gi|440230611|ref|YP_007344404.1| 16S rRNA m(5)C-1407 methyltransferase [Serratia marcescens FGI94]
gi|440052316|gb|AGB82219.1| 16S rRNA m(5)C-1407 methyltransferase [Serratia marcescens FGI94]
Length = 479
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 20/208 (9%)
Query: 14 LPEAFLDFLK-----ENGLDPSVYSAADSTPRYIRLKTG--NEADLEEIEAELKCKLEKV 66
LP AFLD + E +D + + R +R+ T + AD E +LE +
Sbjct: 9 LPPAFLDATRAIMPAELSMDDFIAACQRPLRRSLRVNTLKISVADFLARVKEYDWQLEPI 68
Query: 67 VWLS-GFYSLPPD--IKIATSMAYKQGKIYGIDAASGAAVSALNISAGD---HVLDLCAA 120
W + GF+ D +++ ++ + G Y +A+S VSAL + GD VLD+ AA
Sbjct: 69 PWCAEGFWIARDDESLRLGSAAEHLSGLFYIQEASSMLPVSAL-FAGGDAPTRVLDVAAA 127
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR 180
PG+K I ++ + G + + A R+ + + + + C L DG F A
Sbjct: 128 PGSKTTQIAALMHNQGGIVANEYAASRVKVLHANISRCGVSN-CALTHFDGRVFGAALPE 186
Query: 181 ----LLLD-PGSCNSVLQEKDDTFREWT 203
+LLD P S V+++ D W+
Sbjct: 187 AFDAILLDAPCSGEGVVRKDPDAMSNWS 214
>gi|432864632|ref|XP_004070383.1| PREDICTED: putative methyltransferase NSUN5-like [Oryzias latipes]
Length = 471
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 59/146 (40%), Gaps = 1/146 (0%)
Query: 10 SKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWL 69
++LP E +++ N L +V D R G + L+++ + K K + L
Sbjct: 124 AQLPSGEQLPRYVRVNTLKTTVEDVVDYLKRDGYTYQGQASRLDDLTLKEK-SFVKDLLL 182
Query: 70 SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
YK G I D AS L +G HV+D CAAPG K +
Sbjct: 183 PELLVFSSKTDFHDHFLYKAGHIILQDKASCLPAYLLKPPSGSHVIDACAAPGNKTSHLA 242
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLL 155
I+ + G + D+ RLA TLL
Sbjct: 243 AIMKNKGKLFAFDLDAKRLATMSTLL 268
>gi|373454494|ref|ZP_09546360.1| ribosomal RNA small subunit methyltransferase B [Dialister
succinatiphilus YIT 11850]
gi|371935769|gb|EHO63512.1| ribosomal RNA small subunit methyltransferase B [Dialister
succinatiphilus YIT 11850]
Length = 448
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 20/142 (14%)
Query: 30 SVYSAADSTP----RYIRLKTGNEADLEEIEAELKCKLEKVVW-------LSGFYSLPPD 78
S+ A + TP R LKT +A L+++ AE K E V W L G ++ P
Sbjct: 177 SILEAFNETPKLAVRVNTLKTNRDA-LQKMMAEKGIKTEAVPWDNNALILLEGAHAFWP- 234
Query: 79 IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSV 138
++G Y +S + L+ GD VLD+CAAPG+K + +++ ++G++
Sbjct: 235 -------LAEEGLAYVQSLSSMIPAAILSPKEGDRVLDMCAAPGSKTTQMAEMMKNNGTI 287
Query: 139 TGVDVARHRLAACRTLLQKYAL 160
D+ H+++ + +K +
Sbjct: 288 DAWDLYPHKISLIKNNAKKLGI 309
>gi|396080811|gb|AFN82432.1| NOL1/NOL2/sun tRNA/rRNA cytosine-C5-methylase [Encephalitozoon
romaleae SJ-2008]
Length = 306
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 5/171 (2%)
Query: 39 PRYIRLKT--GNEADLEEIEAELKCKLEKVVWL-SGFYSLPPDIKIATSMAYKQGKIYGI 95
P IR+ T + D+ ++ L+ + W SG + I + Y G
Sbjct: 33 PTTIRINTLLKHRKDVSKLLRGRGVDLDDLSWTDSGCVVFKSSVPIGATPEYLAGYYCLQ 92
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
AAS V + + G V+DLCAAPG K I ++ ++G + DV R+A ++ +
Sbjct: 93 GAASMLPVLNMELKEGLTVVDLCAAPGGKTTHIAALMENTGIIYANDVNEDRMAGLKSNI 152
Query: 156 QKYALGDRCRLFVADGTTFSLAPL-RLLLDPGSCNSVLQEKDDTFREWTSR 205
Q+ + + C + DG ++ + R+LLD + + KD + + +R
Sbjct: 153 QRMGVRN-CIVMNMDGRKVNVGKVDRVLLDAPCSGTGVISKDPSVKTTRTR 202
>gi|119357565|ref|YP_912209.1| sun protein [Chlorobium phaeobacteroides DSM 266]
gi|119354914|gb|ABL65785.1| sun protein [Chlorobium phaeobacteroides DSM 266]
Length = 444
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Query: 88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHR 147
K GK+ + G A LN VLDLCAAPG K + +++ + GS+T VD + +
Sbjct: 227 KSGKLTVQNPTQGVACLLLNPVPESRVLDLCAAPGGKATFMAELMQNKGSITAVDRSSEK 286
Query: 148 LAACRTLLQKYALG-DRCRLFVADGTTF--SLAPLRLLLD-PGSCNSVLQEKDD 197
L R LG + AD +F P +LLD P + VLQ++ +
Sbjct: 287 LEKTRQ--HAVELGITIIKTICADARSFVPEETPQAVLLDAPCTGTGVLQKRAE 338
>gi|390960865|ref|YP_006424699.1| hypothetical protein containing sun-domain [Thermococcus sp. CL1]
gi|390519173|gb|AFL94905.1| hypothetical protein containing sun-domain [Thermococcus sp. CL1]
Length = 451
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y++GK D AS L G+ VLDL AAPG+K ++ + G + VD +
Sbjct: 238 YREGKFVIQDLASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALMENRGEIVAVDYSYD 297
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTF 174
RL R ++ + + +L ADG +F
Sbjct: 298 RLMRMREKMKLLGIKN-VKLVHADGQSF 324
>gi|283835706|ref|ZP_06355447.1| hypothetical protein CIT292_10098 [Citrobacter youngae ATCC 29220]
gi|291068385|gb|EFE06494.1| ribosomal RNA small subunit methyltransferase B [Citrobacter
youngae ATCC 29220]
Length = 429
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++QG + DA++ VS L G+ +LDLCAAPG K IL+ + +V VDV
Sbjct: 222 GFEQGWVTVQDASAQGCVSYLQPQNGEQILDLCAAPGGKTTHILE-VAPQANVMAVDVDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEK 195
RL+ L++ LG + + DG F R+LLD P S + V++
Sbjct: 281 KRLSRVYDNLKR--LGMKATVKQGDGRYPQQWCGEQQFD----RILLDAPCSASGVIRRH 334
Query: 196 DDTFREWTSRIPWKERKRAV 215
D I W R R +
Sbjct: 335 PD--------IKWLRRDRDI 346
>gi|388601384|ref|ZP_10159780.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio campbellii
DS40M4]
Length = 478
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 20/209 (9%)
Query: 14 LPEAFLDFLK-----ENGLDPSVYSAADSTPRYIR---LKTGNEADLEEIEAELKCKLEK 65
+PEAFL+ ++ ++ + S + IR LK EA LE EA+ KL
Sbjct: 7 IPEAFLEKIQTILPAHLNMEDFIASCQKPLRKSIRVNTLKISVEAFLERAEAK-GWKLSP 65
Query: 66 VVWLSGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCAA 120
V W + + + D + + + + G Y +A+S VSAL N + D VLD AA
Sbjct: 66 VPWCNTGFWIKADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAA 125
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF-SLAPL 179
PG+K I ++ + G + + A R+ +++ + + L DG F P
Sbjct: 126 PGSKTTQIAALMNNEGVLVANEYAASRVKVLHANIERCGIRN-AALSNFDGRVFGGWLPE 184
Query: 180 RL---LLD-PGSCNSVLQEKDDTFREWTS 204
+ LLD P S +++ +D + WT
Sbjct: 185 QFDAVLLDAPCSGEGTVRKDEDAMKNWTQ 213
>gi|429110702|ref|ZP_19172472.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
malonaticus 507]
gi|426311859|emb|CCJ98585.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
malonaticus 507]
Length = 480
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 24/225 (10%)
Query: 14 LPEAFLDFLKEN---GLDPSVYSAADSTP--RYIR---LKTGNEADLEEIEAELKCKLEK 65
LPEAFLD ++E GL + AA P R IR LK EA L ++ A +L
Sbjct: 9 LPEAFLDVMREAMPAGLAMDDFIAACQRPLRRSIRVNTLKISVEAFLAQV-APYGWQLTP 67
Query: 66 VVWL-SGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSALNISAGD--HVLDLCA 119
V W GF+ D + + ++ + G+ Y +A+S V+AL V+D+ A
Sbjct: 68 VPWCPEGFWIERDDEEALPLGSTAEHLSGQFYIQEASSMLPVAALFADGNTPARVMDVAA 127
Query: 120 APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA-P 178
APG+K I ++ + G + + + R+ + + + + L DG F A P
Sbjct: 128 APGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGIRN-VGLTHFDGRVFGAALP 186
Query: 179 LR---LLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARE 219
+ +LLD P S V+++ D R W+ P ++ A RE
Sbjct: 187 EQFDAILLDAPCSGEGVVRKDPDALRNWS---PQSNQEIAATQRE 228
>gi|415886521|ref|ZP_11548301.1| sun protein [Bacillus methanolicus MGA3]
gi|387587208|gb|EIJ79531.1| sun protein [Bacillus methanolicus MGA3]
Length = 446
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 58/126 (46%), Gaps = 13/126 (10%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ATS A+K G I D +S ALNI +LD AAPG K I + + +G V
Sbjct: 221 LATSNAFKNGLITIQDESSMLVAYALNIEENFTILDAAAAPGGKSTHIAEKLNQTGKVIS 280
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL--------RLLLD-PGSCNSV 191
+D+ H++ ++ L D L V D LAP R+LLD P S V
Sbjct: 281 LDLHEHKVKLIGRAAERLGL-DNIELKVLDS---RLAPEHFAAESFDRILLDAPCSGLGV 336
Query: 192 LQEKDD 197
++ K D
Sbjct: 337 MRRKPD 342
>gi|323340708|ref|ZP_08080960.1| RNA methyltransferase Sun [Lactobacillus ruminis ATCC 25644]
gi|417974294|ref|ZP_12615115.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus ruminis ATCC
25644]
gi|323091831|gb|EFZ34451.1| RNA methyltransferase Sun [Lactobacillus ruminis ATCC 25644]
gi|346329291|gb|EGX97589.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus ruminis ATCC
25644]
Length = 447
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S AYK+G + D ++ AV ++++ + D VLD CAAPG K I ++ DSG V
Sbjct: 224 IPQSDAYKRGLVTVQDESAMLAVDSMDVKSTDVVLDGCAAPGGKTMQIAAVL-DSGRVYA 282
Query: 141 VDVARHRLA 149
+D+ H++
Sbjct: 283 LDIHAHKVG 291
>gi|126460604|ref|YP_001056882.1| Fmu (Sun) domain-containing protein [Pyrobaculum calidifontis JCM
11548]
gi|126250325|gb|ABO09416.1| Fmu (Sun) domain protein [Pyrobaculum calidifontis JCM 11548]
Length = 415
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
D AS V AL+ GD VLDL AAPG K+ + I V DV+R R+A R LL
Sbjct: 222 DLASVYTVLALDPRPGDSVLDLAAAPGMKISLATQIAEGKLKVVAADVSRKRVARMRHLL 281
Query: 156 QKYALGDRCRLFVADGTTFSLAPLRL---LLDPGSCNS 190
+ ALG + V + LA R LLD C S
Sbjct: 282 K--ALGAYQYVDVVHADSRKLAARRFDKALLD-APCTS 316
>gi|342306137|dbj|BAK54226.1| RNA (m5C) methyltransferase [Sulfolobus tokodaii str. 7]
Length = 335
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 52 LEEIEAELKCKLEKVVWLSGFY---SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNI 108
LE+I KLEKV WL Y P + ++ Y G Y AS L+
Sbjct: 75 LEKIMENKGFKLEKVSWLKHGYIVKQYPSKPSLGATIEYLSGYYYIQGLASMVPPYVLDP 134
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAA 150
+ D VLD+ AAPG+K + ++ + G + V+ +R R+ +
Sbjct: 135 NENDLVLDMAAAPGSKTTQLAQLMKNKGLIVAVEKSRERIKS 176
>gi|156121251|ref|NP_001095773.1| putative methyltransferase NSUN5 [Bos taurus]
gi|151556204|gb|AAI49961.1| NSUN5 protein [Bos taurus]
gi|296472990|tpg|DAA15105.1| TPA: NOL1/NOP2/Sun domain family, member 5 [Bos taurus]
Length = 462
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 66/160 (41%), Gaps = 10/160 (6%)
Query: 75 LPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD 134
P + Y+ G + D AS L G HV+D CAAPG K + ++ +
Sbjct: 191 FPAQTDLHNHPLYQAGHLILQDKASCLPAMLLAPPPGSHVIDACAAPGNKTSHLAALLKN 250
Query: 135 SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSC 188
G + D RLA+ TLL + + C L D S + R +LLDP
Sbjct: 251 QGKIFAFDQDAKRLASMATLLARAGVSC-CELAEQDFLAVSPSDQRYCQVQYILLDPSCS 309
Query: 189 NSVLQEKDDTFREWTSRIPWKERKRAVKA-RENAASKAIV 227
S + + E S P ER RA+ A ++ A S A+
Sbjct: 310 GSGMPSRQ--LEEPKSCTPSPERLRALAAFQQRALSHALT 347
>gi|149436867|ref|XP_001514526.1| PREDICTED: putative methyltransferase NSUN5-like, partial
[Ornithorhynchus anatinus]
Length = 433
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 87/224 (38%), Gaps = 34/224 (15%)
Query: 23 KENGLDP-SVYSAADSTPRYIRLKT--------------------GNEADLEEIEAELKC 61
E+ L+P S A PRY+R+ T G + EE++A
Sbjct: 86 NEDLLEPASGARPASKVPRYVRVNTLKTCPGDAVDYFKRQGFSYQGRASSPEELQALEGK 145
Query: 62 KLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
+ L P + + Y+ G + D AS + L G HV+D CAAP
Sbjct: 146 RFFLDPLLPELLVFPAGTDLHENPFYRAGHLILQDKASCLPATLLAPPPGSHVIDACAAP 205
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL-- 179
G K + ++ + G + D+ RLA+ TLL + + C L A+ S+ P
Sbjct: 206 GNKTSHLAALLKNQGKIFAFDLDAGRLASMATLLTRAGVSC-CEL--ANEDFLSVPPTDP 262
Query: 180 ------RLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKA 217
+LLDP S + + E + P ER RA+ A
Sbjct: 263 RYGRVQYILLDPSCSGSGMVSR--RLEEPEADGPSPERLRALAA 304
>gi|315917987|ref|ZP_07914227.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
ATCC 25563]
gi|313691862|gb|EFS28697.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium gonidiaformans
ATCC 25563]
Length = 440
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S +++GKI DAAS A L G+ VLD C+APG K ++ + + + G +
Sbjct: 211 LLNSSEFQEGKIIVQDAASYLAAKNLGAKPGEIVLDTCSAPGGKTSVLAEAMKNEGQILS 270
Query: 141 VDVARHRL 148
+D+ H++
Sbjct: 271 LDIHTHKI 278
>gi|33416857|gb|AAH55530.1| Zgc:66176 [Danio rerio]
gi|182890860|gb|AAI65602.1| Zgc:66176 protein [Danio rerio]
Length = 483
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
YK G I D AS LN G HV+D CAAPG K + I+ + G + D+
Sbjct: 201 YKAGHIILQDKASCLPAFLLNPPVGSHVIDACAAPGNKTSHLAAIMKNKGKLFAFDLDAK 260
Query: 147 RLAACRTLL 155
RL+ TLL
Sbjct: 261 RLSTMSTLL 269
>gi|164687800|ref|ZP_02211828.1| hypothetical protein CLOBAR_01444 [Clostridium bartlettii DSM
16795]
gi|164603075|gb|EDQ96540.1| ribosomal RNA small subunit methyltransferase B [Clostridium
bartlettii DSM 16795]
Length = 441
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 20 DFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIE-AELKCKLEKVVWLSGFYSLPPD 78
D L+ N PS+Y ++ LKT + ++ +E E+ C EKV ++ +
Sbjct: 167 DLLEANTERPSIYLRVNT------LKTTRDELIKLLEEQEVNC--EKVPFMDEAIKVNNL 218
Query: 79 IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSV 138
I + YK+G D +S LN VLD+C+APG K I ++ +SG V
Sbjct: 219 KNIENNELYKKGLFTVQDISSMLVGKILNPQKDTKVLDVCSAPGGKTTHIATLMENSGQV 278
Query: 139 TGVDVARHRLAACRTLLQKYALGD 162
D+ H++ + + + L +
Sbjct: 279 ISRDIFEHKIKLIQNSVNRLGLKN 302
>gi|317059336|ref|ZP_07923821.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
gi|313685012|gb|EFS21847.1| 16S rRNA m(5)C 967 methyltransferase [Fusobacterium sp. 3_1_5R]
Length = 440
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S +++GKI DAAS A L G+ VLD C+APG K ++ + + + G +
Sbjct: 211 LLNSSEFQEGKIIVQDAASYLAAKNLGAKPGEIVLDTCSAPGGKTSVLAEAMKNEGQILS 270
Query: 141 VDVARHRL 148
+D+ H++
Sbjct: 271 LDIHTHKI 278
>gi|153835218|ref|ZP_01987885.1| Sun/nucleolar protein family protein [Vibrio harveyi HY01]
gi|148868284|gb|EDL67416.1| Sun/nucleolar protein family protein [Vibrio harveyi HY01]
Length = 478
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 20/209 (9%)
Query: 14 LPEAFLDFLK-----ENGLDPSVYSAADSTPRYIR---LKTGNEADLEEIEAELKCKLEK 65
+PEAFL+ ++ ++ + S + IR LK EA LE EA+ KL
Sbjct: 7 IPEAFLEKIQTILPAHLNMEDFIASCQKPLRKSIRVNTLKISVEAFLERAEAK-GWKLSP 65
Query: 66 VVWLSGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCAA 120
V W + + + D + + + + G Y +A+S VSAL N + D VLD AA
Sbjct: 66 VPWCNTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAA 125
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF-SLAPL 179
PG+K I ++ + G + + A R+ +++ + + L DG F P
Sbjct: 126 PGSKTTQIAALMNNEGVLVANEYAASRVKVLHANIERCGVRN-AALSNFDGRVFGGWLPE 184
Query: 180 RL---LLD-PGSCNSVLQEKDDTFREWTS 204
+ LLD P S +++ +D + WT
Sbjct: 185 QFDAVLLDAPCSGEGTVRKDEDAMKNWTQ 213
>gi|407770375|ref|ZP_11117745.1| tRNA and rRNA cytosine-C5-methylase [Thalassospira xiamenensis M-5
= DSM 17429]
gi|407286653|gb|EKF12139.1| tRNA and rRNA cytosine-C5-methylase [Thalassospira xiamenensis M-5
= DSM 17429]
Length = 445
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 40 RYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAAS 99
R RL+ E ++ +EA+ +E+ + LP + + + AYK G I D AS
Sbjct: 168 RVNRLQGTVEDAIKSLEADGIHNIERTPYAPNGLRLPLGVNMLVTAAYKDGLIEIQDEAS 227
Query: 100 GAAVSALNISAGDHVLDLCAAPGAK-LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
V ++ G H+LD+CA G K L M D+ G G + D RL R ++
Sbjct: 228 QICVRLVDAKPGMHILDMCAGGGGKTLGMASDMRG-KGRILACDTHGGRLDNSRKRAKRA 286
Query: 159 ALGD 162
GD
Sbjct: 287 GAGD 290
>gi|440908449|gb|ELR58463.1| Putative methyltransferase NSUN5 [Bos grunniens mutus]
Length = 462
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y+ G + D AS L G HV+D CAAPG K + ++ + G + D
Sbjct: 203 YQAGHLILQDKASCLPAMLLAPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDQDAK 262
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSCNSVLQEKDDTFR 200
RLA+ TLL + + C L D S + R +LLDP S + +
Sbjct: 263 RLASMATLLARAGVSC-CELAEQDFLAVSPSDQRYCQVQYILLDPSCSGSGMPSRQ--LE 319
Query: 201 EWTSRIPWKERKRAVKA-RENAASKAIV 227
E S P ER RA+ A ++ A S A+
Sbjct: 320 EPKSCTPSPERLRALAAFQQRALSHALT 347
>gi|403667672|ref|ZP_10932972.1| ribosomal RNA small subunit methyltransferase B [Kurthia sp. JC8E]
Length = 454
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%)
Query: 82 ATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGV 141
A S A+++G I D +S AL++ G V D+CAAPG K I + + + G+V
Sbjct: 229 ARSKAFEEGVITIQDESSMIPAYALDVQPGMRVYDMCAAPGGKTTHIAEKMNNEGTVIAT 288
Query: 142 DVARHRL 148
D+ +H++
Sbjct: 289 DLHKHKI 295
>gi|429765805|ref|ZP_19298085.1| ribosomal RNA small subunit methyltransferase B [Clostridium
celatum DSM 1785]
gi|429185658|gb|EKY26632.1| ribosomal RNA small subunit methyltransferase B [Clostridium
celatum DSM 1785]
Length = 438
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 100/207 (48%), Gaps = 29/207 (14%)
Query: 23 KENGLDPSVYSAADSTPRY-IRLKTGNEADLEEIEAELKCKLEKVVW-LSGFYSLPPDI- 79
+ENG + + ++TP+ +R+ T N+AD +E+ KLE++ + + Y+ P I
Sbjct: 159 EENG--RKILAGLNATPKVTVRVNT-NKADFDEVYE----KLEEMGYDVEEGYACPEAII 211
Query: 80 -----KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD 134
I + +++G I D ++ L+I+ GD VLDLC+APG K +++
Sbjct: 212 IKGGSSIENNELFREGYITVQDESAMLVAPLLDINEGDVVLDLCSAPGGKTTHAAELLEG 271
Query: 135 SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF-----SLAPLRLLLDPGSCN 189
+G V D+ ++L+ +++ L + + D T S+A L+ P S
Sbjct: 272 TGKVYAFDLHENKLSLITENVERLGLNN-VEVDAMDATKLNSKYVSMADKVLIDVPCSGL 330
Query: 190 SVLQEKDDTFREWTSRIPWKERKRAVK 216
++++K + I W + ++++K
Sbjct: 331 GIIRKKPE--------IKWNKSRKSLK 349
>gi|409728290|ref|ZP_11271157.1| RNA methylase [Halococcus hamelinensis 100A6]
gi|448721863|ref|ZP_21704406.1| RNA methylase [Halococcus hamelinensis 100A6]
gi|445790935|gb|EMA41585.1| RNA methylase [Halococcus hamelinensis 100A6]
Length = 302
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 70/173 (40%), Gaps = 10/173 (5%)
Query: 40 RYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAAS 99
R +KT E E ++ E + E W G L T A+ G ++G + S
Sbjct: 30 RVNTIKTSVERAKEALDEE-GVEFESCEWQPGLVKLDGTTTGRTWGAF-HGWLHGQEEVS 87
Query: 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159
+ + G+ V CAAPG K + + D G V D RL+A R ++
Sbjct: 88 ALPATVCDPKPGERVFAACAAPGGKATQLAALADDRGLVVANDRNLGRLSALRFNAERLG 147
Query: 160 LGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWTSR 205
+ + D +SLAP R L+D P SC +++ D EW+ +
Sbjct: 148 VTSMA-VTNRDAGNYSLAPFDFEAFDRALVDVPCSCEGTIRKNPDALDEWSRQ 199
>gi|296131695|ref|YP_003638942.1| Fmu (Sun) domain-containing protein [Thermincola potens JR]
gi|296030273|gb|ADG81041.1| Fmu (Sun) domain protein [Thermincola potens JR]
Length = 464
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 11/171 (6%)
Query: 14 LPEAFLDFLKEN-GLDPSVYSAADSTPRYIRLKTGN-EADLEEIEAELKCKLEKVVWL-S 70
LP AFL +++ G + + + + + PR L+ + E ++ L E+V W
Sbjct: 3 LPPAFLTKMEQQLGSNFARFLQSYTEPRTAGLRANTLKISPEALQELLPFLQERVSWCRD 62
Query: 71 GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
GFY +++ A Y G Y + ++ L + G+ VLDLCAAPG K +
Sbjct: 63 GFYYNEEEVRPAKLPHYYAGLYYIQEPSAMLPAELLQVQPGERVLDLCAAPGGKSLQLAA 122
Query: 131 IIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRL 181
+G +G + D R +++Y V + S P RL
Sbjct: 123 HLGKAGLLVVNDPHPQRAKVLLKNIERYG--------VINAVVLSETPQRL 165
>gi|47220465|emb|CAG03245.1| unnamed protein product [Tetraodon nigroviridis]
Length = 429
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 58/153 (37%), Gaps = 21/153 (13%)
Query: 23 KENGLDPSVYSAADSTPRYIRLKT--------------------GNEADLEEIEAELKCK 62
K L P PRY+R+ T G+ + +E++ + K +
Sbjct: 115 KNEDLLPKNTKQPVQLPRYVRVNTLKTTVDDVVDYLKRDGLSYLGHASRMEDLTLKEK-E 173
Query: 63 LEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPG 122
+ + L P YK G I D AS L+ AG HV+D CAAPG
Sbjct: 174 FLRDMHLPELLVFSPRTDFHEHFLYKSGHIILQDKASCLPAYLLDPPAGSHVIDACAAPG 233
Query: 123 AKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
K + I+ + G + D+ RL TLL
Sbjct: 234 NKSSHLAAIMKNKGRLFAFDLDAKRLTTMSTLL 266
>gi|404418446|ref|ZP_11000213.1| 16S rRNA methyltransferase B [Staphylococcus arlettae CVD059]
gi|403489039|gb|EJY94617.1| 16S rRNA methyltransferase B [Staphylococcus arlettae CVD059]
Length = 435
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S +K G + D +S + L GD VLD C+APG K C I +++ + G V
Sbjct: 219 IIESRIFKDGLVSIQDKSSMFVANILAPEPGDSVLDACSAPGGKACHIAELMANQGQVDA 278
Query: 141 VDVARHRL 148
D+ H++
Sbjct: 279 TDIHEHKI 286
>gi|444316758|ref|XP_004179036.1| hypothetical protein TBLA_0B06960 [Tetrapisispora blattae CBS 6284]
gi|387512076|emb|CCH59517.1| hypothetical protein TBLA_0B06960 [Tetrapisispora blattae CBS 6284]
Length = 508
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%)
Query: 68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
++ + + P KI + YK GKI D AS LN + D+++D CAAPG K
Sbjct: 204 YIPNLFGISPTDKITSHELYKNGKIIIQDRASCFPAHILNATPDDYIIDACAAPGNKTTH 263
Query: 128 ILDIIGDSGSVTGVDVARHRLAA 150
+ I + T ++ + R+ A
Sbjct: 264 VASYIMSLNNDTHINFDKKRVFA 286
>gi|444426628|ref|ZP_21222039.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio campbellii
CAIM 519 = NBRC 15631]
gi|444240121|gb|ELU51669.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio campbellii
CAIM 519 = NBRC 15631]
Length = 478
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 20/209 (9%)
Query: 14 LPEAFLDFLK-----ENGLDPSVYSAADSTPRYIR---LKTGNEADLEEIEAELKCKLEK 65
+PEAFL+ ++ ++ + S + IR LK EA LE EA+ KL
Sbjct: 7 IPEAFLEKIQTILPAHLNMEDFIASCQKPLRKSIRVNTLKISVEAFLERAEAK-GWKLSP 65
Query: 66 VVWLSGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCAA 120
V W + + + D + + + + G Y +A+S VSAL N + D VLD AA
Sbjct: 66 VPWCNTGFWIKADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAA 125
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF-SLAPL 179
PG+K I ++ + G + + A R+ +++ + + L DG F P
Sbjct: 126 PGSKTTQIAALMNNEGVLVANEYAASRVKVLHANIERCGVRN-AALSNFDGRVFGGWLPE 184
Query: 180 RL---LLD-PGSCNSVLQEKDDTFREWTS 204
+ LLD P S +++ +D + WT
Sbjct: 185 QFDAVLLDAPCSGEGTVRKDEDAMKNWTQ 213
>gi|347522234|ref|YP_004779805.1| rRNA methylase [Lactococcus garvieae ATCC 49156]
gi|385833619|ref|YP_005871394.1| rRNA methylase [Lactococcus garvieae Lg2]
gi|343180802|dbj|BAK59141.1| rRNA methylase [Lactococcus garvieae ATCC 49156]
gi|343182772|dbj|BAK61110.1| rRNA methylase [Lactococcus garvieae Lg2]
Length = 423
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
A S A+ +GKI D S L+++ + +LD CAAPG K I + D+G VT
Sbjct: 203 FAHSQAFIEGKITIQDETSQLVAPQLDLTGSERILDACAAPGGKTTHIAQYL-DTGHVTA 261
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175
D+ H+L ++ + ++ AD T +
Sbjct: 262 CDLYDHKLKLIEDNAERQGVWEKITTVKADATQLA 296
>gi|257096824|sp|A7N0K6.2|RSMF_VIBHB RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 478
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 20/209 (9%)
Query: 14 LPEAFLDFLK-----ENGLDPSVYSAADSTPRYIR---LKTGNEADLEEIEAELKCKLEK 65
+PEAFL+ ++ ++ + S + IR LK EA LE EA+ KL
Sbjct: 7 IPEAFLEKIQTILPAHLNMEDFIASCQKPLRKSIRVNTLKISVEAFLERAEAK-GWKLSP 65
Query: 66 VVWLSGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCAA 120
V W + + + D + + + + G Y +A+S VSAL N + D VLD AA
Sbjct: 66 VPWCNTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAA 125
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF-SLAPL 179
PG+K I ++ + G + + A R+ +++ + + L DG F P
Sbjct: 126 PGSKTTQIAALMNNEGVLVANEYAASRVKVLHANIERCGVRN-AALSNFDGRVFGGWLPE 184
Query: 180 RL---LLD-PGSCNSVLQEKDDTFREWTS 204
+ LLD P S +++ +D + WT
Sbjct: 185 QFDAVLLDAPCSGEGTVRKDEDAMKNWTQ 213
>gi|156974634|ref|YP_001445541.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Vibrio harveyi ATCC
BAA-1116]
gi|156526228|gb|ABU71314.1| hypothetical protein VIBHAR_02352 [Vibrio harveyi ATCC BAA-1116]
Length = 501
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 20/209 (9%)
Query: 14 LPEAFLDFLK-----ENGLDPSVYSAADSTPRYIR---LKTGNEADLEEIEAELKCKLEK 65
+PEAFL+ ++ ++ + S + IR LK EA LE EA+ KL
Sbjct: 30 IPEAFLEKIQTILPAHLNMEDFIASCQKPLRKSIRVNTLKISVEAFLERAEAK-GWKLSP 88
Query: 66 VVWLSGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCAA 120
V W + + + D + + + + G Y +A+S VSAL N + D VLD AA
Sbjct: 89 VPWCNTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAA 148
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF-SLAPL 179
PG+K I ++ + G + + A R+ +++ + + L DG F P
Sbjct: 149 PGSKTTQIAALMNNEGVLVANEYAASRVKVLHANIERCGVRN-AALSNFDGRVFGGWLPE 207
Query: 180 RL---LLD-PGSCNSVLQEKDDTFREWTS 204
+ LLD P S +++ +D + WT
Sbjct: 208 QFDAVLLDAPCSGEGTVRKDEDAMKNWTQ 236
>gi|323701798|ref|ZP_08113469.1| sun protein [Desulfotomaculum nigrificans DSM 574]
gi|333923478|ref|YP_004497058.1| sun protein [Desulfotomaculum carboxydivorans CO-1-SRB]
gi|323533334|gb|EGB23202.1| sun protein [Desulfotomaculum nigrificans DSM 574]
gi|333749039|gb|AEF94146.1| sun protein [Desulfotomaculum carboxydivorans CO-1-SRB]
Length = 453
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 18/162 (11%)
Query: 21 FLKENGLDPSV---YSAADSTPRYIRLKTG--NEADL------EEIEAELKCKLEKVVWL 69
+LKE G D +V + P IR T N DL E +E + + + L
Sbjct: 161 WLKEFGFDQTVALCKANNHPAPNTIRTNTLKINRTDLKARLEFEGVETRVTKYAPEGLHL 220
Query: 70 SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
+GF S + ++++G D +S ALN ++G ++D+ +APG K +
Sbjct: 221 NGFLSY------QSLPSFQEGLFQVQDESSMLVAHALNPASGARIIDVASAPGGKTTHLA 274
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171
++ D G + VD+ H+L + Q+ + + R +AD
Sbjct: 275 QLMKDRGEIVAVDIHPHKLELIKENCQRLGI-NSIRTLLADA 315
>gi|392513053|emb|CAD24979.2| NUCLEOLAR PROTEIN (NOL1/NOP2 family) [Encephalitozoon cuniculi
GB-M1]
Length = 306
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 85/196 (43%), Gaps = 5/196 (2%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKT--GNEADLEEIEAELKCKLEKVVWL-S 70
L E + ++ + + P IR+ T D+ ++ + L+ + W S
Sbjct: 8 LLEKICEIFPRKEVEAFIEESEKQRPMTIRINTLLKGRKDVLKLLSGRGVDLDALSWTDS 67
Query: 71 GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
G + I + Y G AAS V +++ G V+DLCAAPG K I
Sbjct: 68 GCVVFKSSVPIGATPEYLAGYYCLQGAASMLPVLNMDLKEGLTVVDLCAAPGGKTTHIAA 127
Query: 131 IIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL-RLLLDPGSCN 189
++ ++G + DV R+A ++ +Q+ + + C + DG ++ + R+LLD
Sbjct: 128 LMENTGVIYANDVNEERIAGLKSNIQRMGVRN-CIVMNMDGRKVNVGRVDRVLLDAPCSG 186
Query: 190 SVLQEKDDTFREWTSR 205
+ + KD + + +R
Sbjct: 187 TGVISKDPSVKTSRTR 202
>gi|145592415|ref|YP_001154417.1| Fmu (Sun) domain-containing protein [Pyrobaculum arsenaticum DSM
13514]
gi|145284183|gb|ABP51765.1| Fmu (Sun) domain protein [Pyrobaculum arsenaticum DSM 13514]
Length = 414
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%)
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
D AS AV +L GD ++DL AAPG K +I + + VD++ R+A R LL
Sbjct: 220 DLASIYAVLSLRPEPGDRIIDLAAAPGMKTSLIAQLAEGRAKIVAVDLSAKRVARMRHLL 279
Query: 156 QKYALGDRCRLFVADG 171
+ GD + AD
Sbjct: 280 KNLGAGDFVEVVRADS 295
>gi|294056140|ref|YP_003549798.1| Fmu (Sun) domain-containing protein [Coraliomargarita akajimensis
DSM 45221]
gi|293615473|gb|ADE55628.1| Fmu (Sun) domain protein [Coraliomargarita akajimensis DSM 45221]
Length = 421
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 12/117 (10%)
Query: 41 YIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASG 100
Y++L G +A L E + W S FY L + +G Y D ++
Sbjct: 179 YLKLYQGTDAGLPESQ-----------W-SPFYKLDGPVPEPLKAELNRGLAYIKDPSTR 226
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157
A L AGD +LDLCAAPG K + ++ G +T +D+ R+ R L K
Sbjct: 227 LAPELLAPKAGDRILDLCAAPGGKAFDLAKLMQGRGQLTAIDLPGSRINRLRENLAK 283
>gi|302385720|ref|YP_003821542.1| RNA methylase [Clostridium saccharolyticum WM1]
gi|302196348|gb|ADL03919.1| RNA methylase, NOL1/NOP2/sun family [Clostridium saccharolyticum
WM1]
Length = 466
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 6/147 (4%)
Query: 62 KLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
+L+K+ W Y P D + ++ G Y + ++ A V L+ G+ +LDLCAAP
Sbjct: 54 QLKKIPWAEEGYYYPADERPGKHPYHEAGLYYIQEPSAMAVVELLDPRPGERILDLCAAP 113
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA-PL- 179
G K I + +G + ++ R +++ +G+ C + D + S P
Sbjct: 114 GGKTTHIAGRLKGNGFLLSNEIHPARARILSQNVERLGIGN-CVVSNEDSQSLSRRFPSF 172
Query: 180 --RLLLDPGSCNSVLQEKDDTFR-EWT 203
R+++D + KD+T R EWT
Sbjct: 173 FDRIVVDAPCSGEGMFRKDETARQEWT 199
>gi|331091190|ref|ZP_08340031.1| hypothetical protein HMPREF9477_00674 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330404637|gb|EGG84176.1| hypothetical protein HMPREF9477_00674 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 461
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 86/212 (40%), Gaps = 17/212 (8%)
Query: 2 LCTLDGEISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEA-DLEEIEAELK 60
L T+ E K+ L E F D++K PR+ L+ + +E+ +
Sbjct: 3 LPTIFEEKMKMLLGEEFSDYIK-----------CYDEPRFYGLRVNTKKISVEKFKEICP 51
Query: 61 CKLEKVVWL-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCA 119
++ + W+ +GFY ++ A Y G Y + ++ + L I GD VLD+CA
Sbjct: 52 FEIRPIPWIENGFYYDGDKVQPAKHPYYFAGLYYLQEPSAMTPANRLPIEPGDKVLDVCA 111
Query: 120 APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL 179
APG K + + G + D++ R ++ + +G+ L G P
Sbjct: 112 APGGKATELGAKLKGQGVLIANDISNSRAKGLLKNIEIFGVGNVLVLSEEPGKLEEYFPE 171
Query: 180 ---RLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
++L+D P S + ++ + W P
Sbjct: 172 YFDKILIDAPCSGEGMFRKDKKMVKAWEEHGP 203
>gi|307244060|ref|ZP_07526179.1| NOL1/NOP2/sun family protein [Peptostreptococcus stomatis DSM
17678]
gi|306492584|gb|EFM64618.1| NOL1/NOP2/sun family protein [Peptostreptococcus stomatis DSM
17678]
Length = 497
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 8/156 (5%)
Query: 11 KLPLPEAFLDFLKE-------NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKL 63
+L LPE+FL +KE + LD S S R LK E + +
Sbjct: 29 RLSLPESFLREMKEILGDEYQDFLD-SYQDEKTSAIRVNNLKMPIERFKDLGLFNIDFDR 87
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
+ + W Y + D+ + + G Y + ++ + V I+ GD VLDLCAAPG
Sbjct: 88 DNISWAKEGYYISGDVNPGKNPLHDAGAYYIQEPSAMSVVGQTPINEGDRVLDLCAAPGG 147
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159
K IL + G + ++ +R+ A L+++
Sbjct: 148 KSTYILSKLNHRGLLVSNEINPNRIRALGENLERFG 183
>gi|453066263|gb|EMF07212.1| 16S rRNA methyltransferase B [Serratia marcescens VGH107]
Length = 429
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 31/168 (18%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G + DA++ V L+ G+ +LDLCAAPG K IL+ V VD+
Sbjct: 223 FAEGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVMAVDIDEQ 281
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTT---------FSLAPLRLLLD-PGSCNSVLQEKD 196
RLA + LQ+ L +L DG T F R+LLD P S V++
Sbjct: 282 RLARVKENLQRLRLHAEVKL--GDGRTPQQWCGDKQFD----RILLDAPCSATGVIRRHP 335
Query: 197 DTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIV 244
D I W R R + A A +++E E ++ +SG V
Sbjct: 336 D--------IKWLRRDRDI------AELAALQAEILEAVWPHLKSGGV 369
>gi|153814848|ref|ZP_01967516.1| hypothetical protein RUMTOR_01063 [Ruminococcus torques ATCC 27756]
gi|331089630|ref|ZP_08338529.1| hypothetical protein HMPREF1025_02112 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145847879|gb|EDK24797.1| NOL1/NOP2/sun family protein [Ruminococcus torques ATCC 27756]
gi|330404998|gb|EGG84536.1| hypothetical protein HMPREF1025_02112 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 468
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 5/150 (3%)
Query: 63 LEKVVWL-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
L + W+ +GFY + A Y G Y + ++ + L I AGD VLD+CAAP
Sbjct: 54 LRPIPWIENGFYYDGEKYQPAKHPYYFAGLYYLQEPSAMTPANRLPIEAGDRVLDVCAAP 113
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL-- 179
G K + + SG + D++ R ++ + +G+ L G + P
Sbjct: 114 GGKATELGAKLNGSGVLIANDLSNSRARGLLKNIELFGIGNVLVLSEEPGKLVNYFPEYF 173
Query: 180 -RLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
++L+D P S + ++ + W P
Sbjct: 174 DKILIDAPCSGEGMFRKDRKMVKAWEEHGP 203
>gi|260942277|ref|XP_002615437.1| hypothetical protein CLUG_04319 [Clavispora lusitaniae ATCC 42720]
gi|238850727|gb|EEQ40191.1| hypothetical protein CLUG_04319 [Clavispora lusitaniae ATCC 42720]
Length = 479
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGD---HVLDLCAAPGAKL 125
+ Y L P KI ++ AY QG+I D AS LN D V+D CAAPG K
Sbjct: 205 IQNLYGLHPREKITSTPAYLQGEIIIQDRASCFPAEILNNDPNDVHSEVIDACAAPGNKT 264
Query: 126 CMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157
+G G V + R+ +T+ +K
Sbjct: 265 THAASFVGPKGVVYAFERDNRRVKVLKTMCEK 296
>gi|212703679|ref|ZP_03311807.1| hypothetical protein DESPIG_01725, partial [Desulfovibrio piger
ATCC 29098]
gi|212672912|gb|EEB33395.1| NOL1/NOP2/sun family protein, partial [Desulfovibrio piger ATCC
29098]
Length = 276
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ +S+A G IY D +S AL G+ VLD+CA+PG+K + + G G V G
Sbjct: 34 LGSSLAAFFGYIYIQDRSSMLPPLALAPRQGEAVLDMCASPGSKTGFLGQLTGPEGFVLG 93
Query: 141 VDVARHRLAACRTLLQ 156
+++R RLA R L
Sbjct: 94 NELSRARLATLRANLH 109
>gi|424045800|ref|ZP_17783364.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HENC-03]
gi|408885895|gb|EKM24600.1| ribosomal RNA small subunit methyltransferase F [Vibrio cholerae
HENC-03]
Length = 478
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 20/209 (9%)
Query: 14 LPEAFLDFLK-----ENGLDPSVYSAADSTPRYIR---LKTGNEADLEEIEAELKCKLEK 65
+PEAFL+ ++ ++ V S + IR LK EA LE EA+ KL
Sbjct: 7 IPEAFLEKIQTILPAHLNMEDFVASCQKPLRKSIRVNTLKISVEAFLERAEAK-GWKLSP 65
Query: 66 VVWLSGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCAA 120
V W + + D + + + + G Y +A+S VSAL N + D VLD AA
Sbjct: 66 VPWCETGFWIDADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNNESYDAVLDTAAA 125
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF-SLAPL 179
PG+K I ++ + G + + A R+ +++ + + L DG F P
Sbjct: 126 PGSKTTQIAALMNNEGVLVANEYAASRVKVLHANIERCGVRN-AALSNFDGRVFGGWLPE 184
Query: 180 RL---LLD-PGSCNSVLQEKDDTFREWTS 204
+ LLD P S +++ +D + WT
Sbjct: 185 QFDAVLLDAPCSGEGTVRKDEDAMKNWTQ 213
>gi|406604903|emb|CCH43644.1| putative methyltransferase [Wickerhamomyces ciferrii]
Length = 475
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 36 DSTP-RYIR---LKTGNEADLEEIEA-ELKCKLEKVV--------WLSGFYSLPPDIKIA 82
D TP R+ R +KT E L E+E E ++K+ ++ + + P KI
Sbjct: 132 DDTPVRWFRANTIKTTKEKVLSELEHLEEVDSIKKIQPGTIYHDEFIPNLFGIHPKEKIT 191
Query: 83 TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGV- 141
T+ Y++G I D AS LN D+V+D CAAPG K + I GS+
Sbjct: 192 TTKLYEKGHIIIQDRASCFPAHILNPGPDDYVIDSCAAPGNKTTHLASYIQRDGSINAFE 251
Query: 142 -DVARHRL 148
DV R ++
Sbjct: 252 RDVRRSKI 259
>gi|426406929|ref|YP_007027028.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas sp.
UW4]
gi|426265146|gb|AFY17223.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas sp.
UW4]
Length = 436
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPKLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L++ L L ADG + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLERLKLS--AELIAADGRDTQAWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|283769352|ref|ZP_06342251.1| NOL1/NOP2/sun family protein [Bulleidia extructa W1219]
gi|283104009|gb|EFC05393.1| NOL1/NOP2/sun family protein [Bulleidia extructa W1219]
Length = 437
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 4/122 (3%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+Y+ G Y +A++ + +S L I GD+VLD+CAAPG+K I + + G + +
Sbjct: 78 SYRNGGFYMQEASASSVISLLKIQPGDYVLDMCAAPGSKTTQIGEYLQQEGLLVSNEYVS 137
Query: 146 HRLAACRTLLQKYALGDRCRLFVAD---GTTFSLAPLRLLLD-PGSCNSVLQEKDDTFRE 201
R + ++ L + L F ++++D P S + +++D+ +E
Sbjct: 138 KRAMILLENIIRHGLQNALVLNCDTSLLAKEFPSGFDKIVVDAPCSGEGLFLKQEDSVQE 197
Query: 202 WT 203
W+
Sbjct: 198 WS 199
>gi|39997843|ref|NP_953794.1| NOL1/NOP2/Sun (tRNA and rRNA cytosine-C5-methyltransferase) family
protein [Geobacter sulfurreducens PCA]
gi|409913194|ref|YP_006891659.1| NOL1/NOP2/Sun (tRNA and rRNA cytosine-C5-methyltransferase) family
protein [Geobacter sulfurreducens KN400]
gi|39984788|gb|AAR36144.1| NOL1/NOP2/Sun (tRNA and rRNA cytosine-C5-methyltransferase) family
protein [Geobacter sulfurreducens PCA]
gi|298506778|gb|ADI85501.1| NOL1/NOP2/Sun (tRNA and rRNA cytosine-C5-methyltransferase) family
protein [Geobacter sulfurreducens KN400]
Length = 319
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 11/170 (6%)
Query: 13 PLPEAFLDFLKE----NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCK---LEK 65
PLP FL ++E + D + S + P +RL + D +E EL+
Sbjct: 8 PLPVPFLALMEEVLPPDLRDACLASFSQEKPTSLRLNP-LKGDPDETRRELESAGFDPVP 66
Query: 66 VVWLSGFYSLPPDIK--IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
V W +++ + + + S +++G+IY +S A AL G+ VLDL AAPG
Sbjct: 67 VSWYPLAFTVDGERRRALTESPPFREGRIYIQSLSSMTAPLALAPEPGETVLDLAAAPGG 126
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173
K M+ ++ + G ++ V+ R R + L R ++ DG +
Sbjct: 127 KTAMMAAMMENRGRLSAVEAVRGRFFRMKANLDHQG-ATMVRTYLTDGRS 175
>gi|392547674|ref|ZP_10294811.1| 16S rRNA methyltransferase [Pseudoalteromonas rubra ATCC 29570]
Length = 427
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 57/130 (43%), Gaps = 20/130 (15%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
A+ QG DAA+ A L G+H+LD CAAPG K C IL++ +V +D
Sbjct: 220 AFAQGASSVQDAAAQMAARLLAPQDGEHILDACAAPGGKTCHILELA--DANVIALDADG 277
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTT---------FSLAPLRLLLD-PGSCNSVLQEK 195
RL LQ+ L +C AD T F R+LLD P S V++
Sbjct: 278 ERLKRVDENLQRLHLSAQC--LEADAATPDAWWQGEQFD----RILLDVPCSATGVIRRH 331
Query: 196 DDTFREWTSR 205
D +W R
Sbjct: 332 PDI--KWLRR 339
>gi|398853373|ref|ZP_10609976.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM80]
gi|398239904|gb|EJN25602.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM80]
Length = 436
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEQALAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTT----FSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL + L++ LG L ADG + P R+LLD P S V++ D
Sbjct: 280 RLVRVKENLER--LGLNAELIAADGRDTEKWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|334125893|ref|ZP_08499877.1| RNA methyltransferase Sun [Enterobacter hormaechei ATCC 49162]
gi|333386293|gb|EGK57510.1| RNA methyltransferase Sun [Enterobacter hormaechei ATCC 49162]
Length = 428
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 25/141 (17%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+++G + DA++ ++ L G+ +LDLCAAPG K IL+ + +V VDV
Sbjct: 221 GFEEGWVTVQDASAQGCMTWLEPKDGEQILDLCAAPGGKTTHILE-VAPRANVMAVDVDE 279
Query: 146 HRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEK 195
RL+ L++ LG + ++ DG T F R+LLD P S V++
Sbjct: 280 QRLSRVYDNLKR--LGMKAQVKQGDGRTPADWCGDTRFD----RILLDAPCSATGVIRRH 333
Query: 196 DDTFREWTSRIPWKERKRAVK 216
D I W R R +K
Sbjct: 334 PD--------IKWLRRDRDIK 346
>gi|15920491|ref|NP_376160.1| Sun family protein [Sulfolobus tokodaii str. 7]
Length = 353
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 3/102 (2%)
Query: 52 LEEIEAELKCKLEKVVWLSGFY---SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNI 108
LE+I KLEKV WL Y P + ++ Y G Y AS L+
Sbjct: 93 LEKIMENKGFKLEKVSWLKHGYIVKQYPSKPSLGATIEYLSGYYYIQGLASMVPPYVLDP 152
Query: 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAA 150
+ D VLD+ AAPG+K + ++ + G + V+ +R R+ +
Sbjct: 153 NENDLVLDMAAAPGSKTTQLAQLMKNKGLIVAVEKSRERIKS 194
>gi|398947748|ref|ZP_10672384.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM33]
gi|398161660|gb|EJM49887.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM33]
Length = 436
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPKLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L++ L L ADG + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLERLKLS--AELIAADGRDTQAWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|223478128|ref|YP_002582529.1| tRNA/RNA cytosine-C5-methylase [Thermococcus sp. AM4]
gi|214033354|gb|EEB74181.1| tRNA/RNA cytosine-C5-methylase [Thermococcus sp. AM4]
Length = 451
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
YK+GK D AS L G+ VLDL AAPG+K ++ + G + VD +
Sbjct: 238 YKEGKFVIQDLASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALMENRGEIVAVDYSYD 297
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTF 174
RL + ++ + + +L ADG +F
Sbjct: 298 RLMRMKEKMKLLGIKN-VKLVHADGQSF 324
>gi|14521110|ref|NP_126585.1| sun protein (fmu protein) [Pyrococcus abyssi GE5]
gi|5458327|emb|CAB49816.1| Sun/NOL1/NOP nucleolar protein [Pyrococcus abyssi GE5]
gi|380741676|tpe|CCE70310.1| TPA: sun protein (fmu protein) [Pyrococcus abyssi GE5]
Length = 450
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+++G D AS LN G+ VLDL AAPG+K ++ + G + VD +
Sbjct: 238 HRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYD 297
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTF 174
RL + +++ + + +L ADG +F
Sbjct: 298 RLMKMKERMKRLGVKN-VKLVHADGQSF 324
>gi|402826699|ref|ZP_10875866.1| tRNA and rRNA cytosine-C5-methylase [Sphingomonas sp. LH128]
gi|402259767|gb|EJU09963.1| tRNA and rRNA cytosine-C5-methylase [Sphingomonas sp. LH128]
Length = 410
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 5/118 (4%)
Query: 57 AELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLD 116
AE +L V + G LP I + +++G + D A+ L S G VLD
Sbjct: 171 AEWAERLGGVSLMPGHVRLPRGIAVEHLEGFREGAWWVQDLAASLPARMLGASEGRSVLD 230
Query: 117 LCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174
LCAAPG K + + VT +D A+ RL R L++ +L + +AD T+
Sbjct: 231 LCAAPGGK---TMQLAAAGWKVTALDNAKRRLERLRENLERTSL--EAEVVLADAFTW 283
>gi|379795582|ref|YP_005325580.1| hypothetical protein SAMSHR1132_10580 [Staphylococcus aureus subsp.
aureus MSHR1132]
gi|356872572|emb|CCE58911.1| Bacterial Fmu (Sun) [Staphylococcus aureus subsp. aureus MSHR1132]
Length = 435
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S ++K G + D +S +N+ D VLD C+APG K C I +++ G V
Sbjct: 219 VIHSRSFKDGFVSIQDKSSMFVAHVMNVDRHDDVLDACSAPGGKACHIAEVLMPEGHVDA 278
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
D+ H++ ++K L + F D T
Sbjct: 279 SDIHEHKIDLINFNIKKLRLTN-ISAFQHDAT 309
>gi|256751534|ref|ZP_05492411.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter ethanolicus
CCSD1]
gi|256749618|gb|EEU62645.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter ethanolicus
CCSD1]
Length = 460
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWL-SGF 72
L E + DFLKE P R LK G +EE + + ++ + W +GF
Sbjct: 17 LKEEYEDFLKEYDKKPQ------KALRVNTLKIG----VEEFKKIVPFEITPIPWCPTGF 66
Query: 73 YSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDII 132
Y + K + + G Y + + A V L+ G+ +LD+ AAPG K I I
Sbjct: 67 Y-YDKEEKAGNHLYHILGLYYIQEPTAMAVVEVLDPRPGEKILDVSAAPGGKTTHIATKI 125
Query: 133 GDSGSVTGVDVARHRLAA 150
GD G + ++ + R+ A
Sbjct: 126 GDEGIIVANEIDKKRIKA 143
>gi|398869697|ref|ZP_10625055.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM74]
gi|398210546|gb|EJM97190.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM74]
Length = 436
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPKLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L++ L L ADG + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLERLKLS--AELIAADGRDTQAWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|398989733|ref|ZP_10692966.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM24]
gi|399012776|ref|ZP_10715094.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM16]
gi|398115020|gb|EJM04815.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM16]
gi|398146959|gb|EJM35683.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM24]
Length = 436
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTT----FSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL + L++ LG L ADG + P R+LLD P S V++ D
Sbjct: 280 RLVRVKENLER--LGLNAELIAADGRDTEKWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|335996801|ref|ZP_08562718.1| 16S rRNA m(5)C methyltransferase [Lactobacillus ruminis SPM0211]
gi|335351871|gb|EGM53362.1| 16S rRNA m(5)C methyltransferase [Lactobacillus ruminis SPM0211]
Length = 447
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S AYK+G + D ++ AV ++++ + D VLD CAAPG K I ++ DSG V
Sbjct: 224 IPHSDAYKRGLVTVQDESAMLAVDSMDVKSTDVVLDGCAAPGGKTMQIAAVL-DSGRVYA 282
Query: 141 VDVARHRLA 149
+D+ H++
Sbjct: 283 LDIHAHKVG 291
>gi|395233956|ref|ZP_10412190.1| 16S rRNA methyltransferase B [Enterobacter sp. Ag1]
gi|394731578|gb|EJF31337.1| 16S rRNA methyltransferase B [Enterobacter sp. Ag1]
Length = 429
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 26/158 (16%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
++QG + DA++ +V L+ G+ +LDLCAAPG K IL+ + V VDV
Sbjct: 223 FEQGWVTVQDASAQGSVDLLDPQNGETILDLCAAPGGKTTHILE-AAPNAKVMAVDVDTQ 281
Query: 147 RLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL L++ LG + + DG T F R+LLD P S V++
Sbjct: 282 RLKRVHENLER--LGMKAEVKQGDGRFPAQWCGETKFD----RILLDAPCSATGVIRRHP 335
Query: 197 DTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPEL 234
D I W R R + A A K I+ + P L
Sbjct: 336 D--------IKWLRRDRDI-AELAALQKEILDAIWPHL 364
>gi|312874209|ref|ZP_07734243.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 2052A-d]
gi|311090279|gb|EFQ48689.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 2052A-d]
Length = 469
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ + +I G++VLDLCAAPG K +I + + G + +++ R
Sbjct: 77 GYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLKNEGVLVANEISSKRAK 136
Query: 150 ACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD------PGSCNSVLQEKDDTFREWT 203
R L+K+ G + + + + D P S + ++ DD R W+
Sbjct: 137 ELRENLEKW--GTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGEGMFRKSDDAIRYWS 194
Query: 204 S 204
Sbjct: 195 Q 195
>gi|16078637|ref|NP_389456.1| RNA-binding Sun protein [Bacillus subtilis subsp. subtilis str.
168]
gi|221309449|ref|ZP_03591296.1| hypothetical protein Bsubs1_08691 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313774|ref|ZP_03595579.1| hypothetical protein BsubsN3_08627 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318698|ref|ZP_03599992.1| hypothetical protein BsubsJ_08561 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322969|ref|ZP_03604263.1| hypothetical protein BsubsS_08667 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402775819|ref|YP_006629763.1| RNA-binding Sun protein [Bacillus subtilis QB928]
gi|418033279|ref|ZP_12671756.1| hypothetical protein BSSC8_27000 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|452914583|ref|ZP_21963210.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
MB73/2]
gi|3915867|sp|P94464.2|RSMB_BACSU RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|2337803|emb|CAA74264.1| putative Fmu protein [Bacillus subtilis subsp. subtilis str. 168]
gi|2633946|emb|CAB13447.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
subsp. subtilis str. 168]
gi|351469427|gb|EHA29603.1| hypothetical protein BSSC8_27000 [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|402481001|gb|AFQ57510.1| RNA-binding Sun protein [Bacillus subtilis QB928]
gi|407958981|dbj|BAM52221.1| RNA-binding Sun protein [Synechocystis sp. PCC 6803]
gi|407964558|dbj|BAM57797.1| RNA-binding Sun protein [Bacillus subtilis BEST7003]
gi|452117003|gb|EME07398.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
MB73/2]
Length = 447
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++ G++ D +S AL+ + + VLD CAAPG K I +++ + GSVT
Sbjct: 222 IAGTHFFQNGEVSIQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTS 281
Query: 141 VDVARHRL 148
+D+ +H++
Sbjct: 282 LDLHKHKV 289
>gi|227500111|ref|ZP_03930182.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
tetradius ATCC 35098]
gi|227217826|gb|EEI83123.1| possible rRNA SAM-dependent methyltransferase RmsB [Anaerococcus
tetradius ATCC 35098]
Length = 433
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A S+ +K+G AS V LN +LD+CAAPG K + + ++G +
Sbjct: 216 LANSLEFKEGLFTIQQEASMKTVEVLNPKRNSRILDICAAPGTKTSYLAEYTSNTGKIIA 275
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175
D++ ++L + +++ AL + + DG+ F+
Sbjct: 276 NDISTNKLCLIKENIERLALTN-IEIKSFDGSVFN 309
>gi|404494920|ref|YP_006719026.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
metallireducens GS-15]
gi|418067574|ref|ZP_12704913.1| sun protein [Geobacter metallireducens RCH3]
gi|78192548|gb|ABB30315.1| 16S rRNA (5-methyl-C967)-methyltransferase [Geobacter
metallireducens GS-15]
gi|373558572|gb|EHP84908.1| sun protein [Geobacter metallireducens RCH3]
Length = 446
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 33 SAADSTPRYIR---LKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQ 89
+ A+ P IR LKT EA +EE+ A E VW + + T + +
Sbjct: 175 AMAEQAPLTIRVNTLKTTREAFMEELAAA-GITAEPTVWAPHGVRILSRTAVTTLPGFAE 233
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRL 148
G D +S A L+ G+ +LD+CAAPG K + ++ + G V D++ +L
Sbjct: 234 GLFTVQDESSQLAAFFLDPQPGERILDVCAAPGGKATYLAQLMENRGEVLACDISAKKL 292
>gi|347525667|ref|YP_004832415.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus ruminis ATCC
27782]
gi|345284626|gb|AEN78479.1| 16S rRNA m(5)C 967 methyltransferase [Lactobacillus ruminis ATCC
27782]
Length = 447
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S AYK+G + D ++ AV ++++ + D VLD CAAPG K I ++ DSG V
Sbjct: 224 IPHSDAYKRGLVTVQDESAMLAVDSMDVKSTDVVLDGCAAPGGKTMQIAAVL-DSGRVYA 282
Query: 141 VDVARHRLA 149
+D+ H++
Sbjct: 283 LDIHAHKVG 291
>gi|410456987|ref|ZP_11310834.1| 16S rRNA methyltransferase B [Bacillus bataviensis LMG 21833]
gi|409926961|gb|EKN64112.1| 16S rRNA methyltransferase B [Bacillus bataviensis LMG 21833]
Length = 449
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A+++A+K G + D +S A AL + VLD CAAPG K I + + ++G V
Sbjct: 224 LASTIAFKYGMLTIQDESSMLAAYALGAMENEFVLDACAAPGGKSTHIAEKLENTGEVIS 283
Query: 141 VDVARHRL 148
VD+ +H++
Sbjct: 284 VDLHQHKV 291
>gi|238797213|ref|ZP_04640714.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
mollaretii ATCC 43969]
gi|238718850|gb|EEQ10665.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
mollaretii ATCC 43969]
Length = 431
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 98/246 (39%), Gaps = 42/246 (17%)
Query: 11 KLPLPEAFLDFLKENGLDPSVYSAAD--STPRYIRLKTGNEADLEEIEAELKCKLEKVVW 68
KL P+ + L N P ++ + R L+ +AD++ + +L +++
Sbjct: 154 KLAYPDQWQQILDANNQKPPMWLRVNRLHHTRSEYLELLKQADIDAVPHDLYSDALRLIT 213
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
+LP ++ G DA++ V L+ G+ +LDLCAAPG K I
Sbjct: 214 PCAVSALP---------GFELGWATVQDASAQGCVDLLDPHNGEQILDLCAAPGGKTTHI 264
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT---------FSLAPL 179
L+ V VD+ RL + LQ+ L R V DG T F
Sbjct: 265 LE-AAPKAHVLAVDIDEQRLDRVKENLQRLKLHAVVR--VGDGRTPEDWCGDQQFD---- 317
Query: 180 RLLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYG 238
R+LLD P S V++ D I W R R + A A ++SE E I+
Sbjct: 318 RILLDAPCSATGVIRRHPD--------IKWLRRDRDI------AELAQLQSEIIEAIWPK 363
Query: 239 RRSGIV 244
+ G V
Sbjct: 364 LKKGGV 369
>gi|430759003|ref|YP_007209724.1| ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. subtilis str. BSP1]
gi|430023523|gb|AGA24129.1| Ribosomal RNA small subunit methyltransferase B [Bacillus subtilis
subsp. subtilis str. BSP1]
Length = 447
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++ G++ D +S AL+ + + VLD CAAPG K I +++ + GSVT
Sbjct: 222 IAGTHFFQNGEVSIQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTS 281
Query: 141 VDVARHRL 148
+D+ +H++
Sbjct: 282 LDLHKHKV 289
>gi|340000948|ref|YP_004731832.1| sun protein [Salmonella bongori NCTC 12419]
gi|339514310|emb|CCC32073.1| sun protein [Salmonella bongori NCTC 12419]
Length = 429
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+ QG + DA++ V+ L G+H+LDLCAAPG K IL+ ++ V VDV
Sbjct: 222 GFDQGWVTVQDASAQGCVALLAPQNGEHILDLCAAPGGKTTHILEAAPEA-HVMAVDVDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL---------RLLLD-PGSCNSVLQEK 195
RL+ L++ LG + + DG PL R+LLD P S V++
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRY----PLQWCGEQQFDRILLDAPCSATGVIRRH 334
Query: 196 DDTFREWTSRIPWKERKRAV 215
D I W R R +
Sbjct: 335 PD--------IKWLRRDRDI 346
>gi|300721396|ref|YP_003710667.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Xenorhabdus
nematophila ATCC 19061]
gi|297627884|emb|CBJ88430.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Xenorhabdus
nematophila ATCC 19061]
Length = 437
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 68/162 (41%), Gaps = 27/162 (16%)
Query: 55 IEAELKCKLEKVVWLSG---FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAG 111
IEAEL K + L +SLP + QG + D ++ L G
Sbjct: 197 IEAELDTKHPNAIRLLNPCPVHSLP---------GFNQGWVTIQDRSAQGCAELLTPCNG 247
Query: 112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL------GD-RC 164
+ +LDLCAAPG K IL+I S V +D+ RL + LQ+ L GD R
Sbjct: 248 EFILDLCAAPGGKTTHILEIAPKS-KVLAIDIDEQRLKRVKENLQRLNLHAVVKTGDGRL 306
Query: 165 RLFVADGTTFSLAPLRLLLD-PGSCNSVLQEKDDTFREWTSR 205
A G F R+LLD P S V++ D +W R
Sbjct: 307 PHEWAAGEQFD----RILLDAPCSATGVIRRHPDI--KWLRR 342
>gi|160892608|ref|ZP_02073398.1| hypothetical protein CLOL250_00138 [Clostridium sp. L2-50]
gi|156865649|gb|EDO59080.1| NOL1/NOP2/sun family protein [Clostridium sp. L2-50]
Length = 460
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 88/209 (42%), Gaps = 23/209 (11%)
Query: 12 LPLPEAFLDFLKE----------NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKC 61
+ LPE+F + +K N LD ++ +R+ T N+ +E+
Sbjct: 1 MNLPESFTNRIKTQLGDEYEAYMNCLDQGMHHG-------LRVNT-NKISVEDFLKISPF 52
Query: 62 KLEKVVWLS-GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
+L+ V W + GFY + Y G Y + ++ A S L + GD VLD+CAA
Sbjct: 53 ELKPVPWTTNGFYYDDKACTPSKHPYYYAGLYYIQEPSAMAPASILPVEDGDVVLDICAA 112
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG---TTFSLA 177
PG K + + +G + D++ R A L+ + +G+ C + A T F
Sbjct: 113 PGGKSTELAAKLHGTGFLISNDISNSRAKALLKNLELFGIGNMCVVSEAPNKLSTKFYQT 172
Query: 178 PLRLLLD-PGSCNSVLQEKDDTFREWTSR 205
++L+D P S + ++ W +
Sbjct: 173 FDKILIDAPCSGEGMFRKSQSMVTAWENN 201
>gi|77456243|ref|YP_345748.1| Fmu, rRNA SAM-dependent methyltransferase [Pseudomonas fluorescens
Pf0-1]
gi|77380246|gb|ABA71759.1| 16S rRNA m(5)C-967 methyltransferase [Pseudomonas fluorescens
Pf0-1]
Length = 436
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSL----APL-RLLLD-PGSCNSVLQEKDD 197
RL + L++ LG L ADG + P R+LLD P S V++ D
Sbjct: 280 RLVRVKENLER--LGLNAELIAADGRDTAAWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|398920312|ref|ZP_10659229.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM49]
gi|398168321|gb|EJM56342.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM49]
Length = 436
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPKLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L++ L L ADG + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLERLKLS--AELIAADGRDTQAWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|283785573|ref|YP_003365438.1| hypothetical protein ROD_18751 [Citrobacter rodentium ICC168]
gi|282949027|emb|CBG88630.1| conserved hypothetical protein [Citrobacter rodentium ICC168]
Length = 479
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 96/208 (46%), Gaps = 19/208 (9%)
Query: 14 LPEAFLDFLKEN---GLDPSVYSAADSTP--RYIRLKTG--NEADLEEIEAELKCKLEKV 66
LPEAFL ++E L + AA P R IR+ T + AD + A L V
Sbjct: 8 LPEAFLSQMREAMPANLSFDDFLAACQRPLRRSIRVNTLKISVADFLALTASYGWSLTPV 67
Query: 67 VWLS-GFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCAA 120
W + GF+ D + + ++ + G Y +A+S V+AL + +A + V+D+ AA
Sbjct: 68 PWCAEGFWIAREDEETLPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPERVMDVAAA 127
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR 180
PG+K I +G+ G++ + + R+ + + +G+ L DG F A
Sbjct: 128 PGSKTTQIAARMGNRGAILANEYSASRVKVLHANISRCGIGN-VALTHFDGRVFGAALPE 186
Query: 181 L----LLD-PGSCNSVLQEKDDTFREWT 203
+ LLD P S V+++ + + W+
Sbjct: 187 MFDAILLDAPCSGEGVVRKDPNALKNWS 214
>gi|449094266|ref|YP_007426757.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
XF-1]
gi|449028181|gb|AGE63420.1| RNA-binding Sun protein; 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Bacillus subtilis
XF-1]
Length = 447
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++ G++ D +S AL+ + + VLD CAAPG K I +++ + GSVT
Sbjct: 222 IAGTHFFQNGEVSIQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTS 281
Query: 141 VDVARHRL 148
+D+ +H++
Sbjct: 282 LDLHKHKV 289
>gi|409349310|ref|ZP_11232802.1| RNA methyltransferase Sun [Lactobacillus equicursoris CIP 110162]
gi|407878247|emb|CCK84860.1| RNA methyltransferase Sun [Lactobacillus equicursoris CIP 110162]
Length = 438
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+K+G++ D A+ A + + + VLD CAAPG K + + + + G VT +D+
Sbjct: 225 FKEGQVTVQDEAASLVAEAFDFTGNERVLDSCAAPGGKTIQLAEKVSE-GQVTALDIHEK 283
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPLRLLLDPGSCNSV 191
+L R Q+ + DR + D G FS +L C+ +
Sbjct: 284 KLRLVRENAQRMQVADRVKTKALDARKAGGYFSKGEFDKILIDAPCSGL 332
>gi|325912131|ref|ZP_08174529.1| NOL1/NOP2/sun family protein [Lactobacillus iners UPII 143-D]
gi|325476081|gb|EGC79249.1| NOL1/NOP2/sun family protein [Lactobacillus iners UPII 143-D]
Length = 469
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ + +I G++VLDLCAAPG K +I + + G + +++ R
Sbjct: 77 GYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLKNEGVLVANEISSKRAK 136
Query: 150 ACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD------PGSCNSVLQEKDDTFREWT 203
R L+K+ G + + + + D P S + ++ DD R W+
Sbjct: 137 ELRENLEKW--GTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGEGMFRKSDDAIRYWS 194
Query: 204 S 204
Sbjct: 195 Q 195
>gi|317486223|ref|ZP_07945057.1| NOL1/NOP2/sun family protein [Bilophila wadsworthia 3_1_6]
gi|316922522|gb|EFV43774.1| NOL1/NOP2/sun family protein [Bilophila wadsworthia 3_1_6]
Length = 425
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 79 IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSV 138
+ S+A G +Y D +S AL G VLD+CA+PG+K ++ ++G G V
Sbjct: 51 FPLGRSLAAFWGYVYIQDRSSMLPPLALAPGEGARVLDMCASPGSKTGLLAQLVGREGLV 110
Query: 139 TGVDVARHRLAACR 152
G + AR RLA R
Sbjct: 111 LGNEPARPRLANLR 124
>gi|389680644|ref|ZP_10171994.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
chlororaphis O6]
gi|388555749|gb|EIM18992.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
chlororaphis O6]
Length = 441
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L ++ G VLD C APG K C IL++ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAAELLELAPGQRVLDACCAPGGKTCHILEVEPALAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSL----APL-RLLLD-PGSCNSVLQEKDD 197
RL + L + LG L ADG + P R+LLD P S V++ D
Sbjct: 280 RLVRVQENLDR--LGLHAELIAADGRDTAAWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|373106317|ref|ZP_09520620.1| NOL1/NOP2/sun family putative RNA methylase [Stomatobaculum longum]
gi|371652692|gb|EHO18100.1| NOL1/NOP2/sun family putative RNA methylase [Stomatobaculum longum]
Length = 456
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 87/206 (42%), Gaps = 18/206 (8%)
Query: 8 EISKLPLP--EAFLDFLKENGLDPSVYSAADSTP----RYIRLKTGNEADLEEIEAELKC 61
+I +LP P E L E + + ++ D P R RLK E E A
Sbjct: 2 QIDRLPRPFLEEMRTLLGEVEYE-AFLASMDEVPLSGLRVNRLKVSTEKLTETFGA---- 56
Query: 62 KLEKVVWL-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
L+ V W +GFY P + + Y G Y + ++ ++ + L G+ +LDLCAA
Sbjct: 57 -LQPVPWTKNGFYR-EPGGEYTSHPYYYAGLYYMQEPSAMSSAALLGTKPGERILDLCAA 114
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL- 179
PG K I D + G + D++ R A ++ +G+ C G + PL
Sbjct: 115 PGGKSTQIADDLQGEGFLLSNDLSASRARALLKNIELMGIGNCCISCEDSGRLKNEYPLF 174
Query: 180 --RLLLD-PGSCNSVLQEKDDTFREW 202
R+L+D P S + ++ + W
Sbjct: 175 FDRILVDAPCSGEGMFRKHPAVIKAW 200
>gi|416350348|ref|ZP_11680855.1| 16S rRNA methyltransferase B [Clostridium botulinum C str.
Stockholm]
gi|338196305|gb|EGO88506.1| 16S rRNA methyltransferase B [Clostridium botulinum C str.
Stockholm]
Length = 443
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I ++ ++ GK+ D ++ + ++I G VLDLC+APG K I +I+ ++G V
Sbjct: 222 IESNPLFEDGKVTVQDESAMLVAATMDIKEGSLVLDLCSAPGGKTTHISEIMNNTGKVMA 281
Query: 141 VDVARHRLAACR 152
D+ ++L+ +
Sbjct: 282 FDIHENKLSLVK 293
>gi|167039631|ref|YP_001662616.1| NOL1/NOP2/sun family RNA methylase [Thermoanaerobacter sp. X514]
gi|307725043|ref|YP_003904794.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter sp. X513]
gi|166853871|gb|ABY92280.1| putative RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter
sp. X514]
gi|307582104|gb|ADN55503.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter sp. X513]
Length = 460
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWL-SGF 72
L E + DFLKE P R LK G +EE + + ++ + W +GF
Sbjct: 17 LKEEYEDFLKEYDKKPQ------KALRVNTLKIG----VEEFKKIVPFEITPIPWCPTGF 66
Query: 73 YSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDII 132
Y + K + + G Y + + A V L+ G+ +LD+ AAPG K I I
Sbjct: 67 Y-YDKEEKAGNHLYHILGLYYIQEPTAMAVVEVLDPRPGEKILDVSAAPGGKTTHIATKI 125
Query: 133 GDSGSVTGVDVARHRLAA 150
GD G + ++ + R+ A
Sbjct: 126 GDEGIIVANEIDKKRIKA 143
>gi|398926154|ref|ZP_10662315.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM48]
gi|398171191|gb|EJM59102.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM48]
Length = 436
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPKLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L++ L L ADG + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLERLKLS--AELIAADGRDTQAWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|325290674|ref|YP_004266855.1| RNA methylase [Syntrophobotulus glycolicus DSM 8271]
gi|324966075|gb|ADY56854.1| RNA methylase, NOL1/NOP2/sun family [Syntrophobotulus glycolicus
DSM 8271]
Length = 520
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 96/228 (42%), Gaps = 18/228 (7%)
Query: 8 EISKLPLPEAFLDFLKENGLDPSV--YSAADSTPRYIRLKTGN-EADLEEIEAELKCKLE 64
EIS L LP+ F + + L P + + A+ PR L+ + E+ A L+
Sbjct: 3 EISTLSLPQTFQKRMADL-LGPELPDFLASYLRPRSNSLRVNTLKITPEDFAALGLFPLK 61
Query: 65 KVVWLS-GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSA-LNISAGDHVLDLCAAPG 122
V W GFY D Y Q +Y I S AV+A L+ GD VLDL AAPG
Sbjct: 62 PVPWCPEGFYYAYQDY--PGKHPYHQAGVYYIQEPSAMAVAAYLDPRPGDCVLDLAAAPG 119
Query: 123 AKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL--- 179
K I + G + ++ R R R LL+ R+ V+ T +L+
Sbjct: 120 GKSTQIASSLQGQGLLWSNEIDRKR---SRILLENLERWGTARMIVSCETPENLSQALPG 176
Query: 180 ---RLLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAAS 223
++LLD P S + ++ R W+ + R K E+AAS
Sbjct: 177 FFHKILLDAPCSGEGMFRKDPGALRHWSVQHVLSCAFRQQKILESAAS 224
>gi|383766124|ref|YP_005445105.1| putative RNA methyltransferase [Phycisphaera mikurensis NBRC
102666]
gi|381386392|dbj|BAM03208.1| putative RNA methyltransferase [Phycisphaera mikurensis NBRC
102666]
Length = 310
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 20/200 (10%)
Query: 14 LPEAFLDFLKENGLDPS--VYSAADS--TPRYIRLKTGNEADLEEIEAELKC-----KLE 64
PEA++ L GL P+ + +AA+ PR + L+ N LE A E
Sbjct: 6 FPEAWIQRLP--GLVPAERLQAAAEHFLAPRPVALRV-NTLRLEPRTAAAALARDGLPAE 62
Query: 65 KVVWLSGFYSLPPDIK--IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPG 122
V W + +++ P + + +QG +Y AS A L+ G+ VLDLCAAPG
Sbjct: 63 PVAWSAAAFTVDPRRRALLVRHPLVEQGDVYPQGLASQLAAFVLDPRPGEAVLDLCAAPG 122
Query: 123 AKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG-TTFSLAPLR- 180
K + +G + V+ ++ R R L++ G R ++ DG T P R
Sbjct: 123 GKTLDLAARLGPGADLAAVEASKPRFFRLRANLERAGAGS-VRTYLHDGRRTGDKVPGRF 181
Query: 181 --LLLD-PGSCNSVLQEKDD 197
+LLD P S ++ L+ DD
Sbjct: 182 DAVLLDAPCSGDTRLRGGDD 201
>gi|374704485|ref|ZP_09711355.1| 16S rRNA methyltransferase B [Pseudomonas sp. S9]
Length = 437
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ T + +G++ D A+ A L ++ G VLD C APG K C IL++ V
Sbjct: 214 VTTLPGFAEGRVSVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHILEVEPGLAGVVA 273
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+D+ RL R L + L L ADG
Sbjct: 274 IDLEPKRLVRVRENLARLKLD--AELIAADG 302
>gi|296121363|ref|YP_003629141.1| sun protein [Planctomyces limnophilus DSM 3776]
gi|296013703|gb|ADG66942.1| sun protein [Planctomyces limnophilus DSM 3776]
Length = 471
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%)
Query: 79 IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSV 138
++I+T + +G+ D ++ A LN G+ VLDLCAAPG+K C + +++ + G +
Sbjct: 259 VRISTLPGFPEGEFSVQDLSAQHAARRLNPQPGEVVLDLCAAPGSKTCHMAELMQNQGEI 318
Query: 139 TGVDVARHRL 148
D R+
Sbjct: 319 IAADTHGGRI 328
>gi|255099659|ref|ZP_05328636.1| putative methylase [Clostridium difficile QCD-63q42]
Length = 436
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 91/199 (45%), Gaps = 11/199 (5%)
Query: 14 LPEAFLDFLKE---NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLS 70
LP+ FL+ ++E + D + S +S +R+ T + + EL L ++ W
Sbjct: 4 LPKEFLEDIEEILKDEYDDFIKSYEESKTTGLRINTLKIDKKKLFDLEL-FDLNQIPWAE 62
Query: 71 -GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
GFY + + ++ G Y + ++ + + +I G+ VLD+CAAPG K IL
Sbjct: 63 EGFYYDDKIDRPGRNPLHEAGAYYLQEPSAMSVIPKADIKEGEKVLDMCAAPGGKSTYIL 122
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT----TFSLAPLRLLLD- 184
+ D+G + ++ R+ A L+++ C + D TF+ ++++D
Sbjct: 123 SKLNDTGLLVSNEINASRIKALGENLERFG-ARNCIITNTDSNSLRKTFNGYFDKVIIDA 181
Query: 185 PGSCNSVLQEKDDTFREWT 203
P S + ++ + +W+
Sbjct: 182 PCSGQGMFRKDEVAISDWS 200
>gi|398976377|ref|ZP_10686283.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM25]
gi|398139213|gb|EJM28214.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM25]
Length = 436
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSL----APL-RLLLD-PGSCNSVLQEKDD 197
RL + L++ LG L ADG + P R+LLD P S V++ D
Sbjct: 280 RLVRVKENLER--LGLNAELIAADGRDTAAWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|84684376|ref|ZP_01012277.1| ribosomal RNA small subunit methyltransferase B, putative
[Maritimibacter alkaliphilus HTCC2654]
gi|84667355|gb|EAQ13824.1| ribosomal RNA small subunit methyltransferase B, putative
[Maritimibacter alkaliphilus HTCC2654]
Length = 420
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVT 139
+++T + +G + DAA+ LN G+ VLDLCAAPG K + + VT
Sbjct: 199 QVSTLPGFAEGDWWVQDAAAALPARVLNAQPGEAVLDLCAAPGGK---TMQLAAAGAEVT 255
Query: 140 GVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNS 190
VD++ HR+A L + L L D + P +L C +
Sbjct: 256 AVDISEHRMARVGENLARCGLS--ADLVTMDALEYEGGPFDAILLDAPCTA 304
>gi|428178413|gb|EKX47288.1| hypothetical protein GUITHDRAFT_157619 [Guillardia theta CCMP2712]
Length = 367
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++K+G Y D ++ +V L+ G+ +LDLC+APG K C I + D G + D+
Sbjct: 190 SFKRGLFYVQDPSTLLSVKVLDPQPGESILDLCSAPGGKSCYIAQRMEDKGKLIASDIDE 249
Query: 146 HRLAACR 152
RL R
Sbjct: 250 LRLNVVR 256
>gi|385333483|ref|YP_005887434.1| rRNA SAM-dependent methyltransferase [Marinobacter adhaerens HP15]
gi|311696633|gb|ADP99506.1| Fmu, rRNA SAM-dependent methyltransferase [Marinobacter adhaerens
HP15]
Length = 426
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 76 PPDIKIATSMA------YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
P I++AT + + G + D A+ + ++++ G VLD CAAPG K C IL
Sbjct: 196 PHGIQLATPVPVDRLPWFADGAVSVQDEAAQLCTTLMDLAPGQRVLDACAAPGGKTCAIL 255
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA-------DGTTFSLAPLRLL 182
+ G+ V +D + RL + L + L + A DG F R+L
Sbjct: 256 ESCGELAEVVAIDESADRLPRVQENLDRLDLNATLKQADAAATDQWWDGEAFD----RIL 311
Query: 183 LD-PGSCNSVLQEKDD 197
LD P S + V++ D
Sbjct: 312 LDVPCSASGVIRRHPD 327
>gi|253682518|ref|ZP_04863315.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum D str. 1873]
gi|253562230|gb|EES91682.1| ribosomal RNA small subunit methyltransferase B [Clostridium
botulinum D str. 1873]
Length = 443
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 41/72 (56%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I ++ ++ GK+ D ++ + ++I G VLDLC+APG K I +I+ ++G V
Sbjct: 222 IESNPLFEDGKVTVQDESAMLVAATMDIKEGSLVLDLCSAPGGKTTHISEIMNNTGKVMA 281
Query: 141 VDVARHRLAACR 152
D+ ++L+ +
Sbjct: 282 FDIHENKLSLVK 293
>gi|126698132|ref|YP_001087029.1| RNA methyltransferase [Clostridium difficile 630]
gi|254974153|ref|ZP_05270625.1| putative methylase [Clostridium difficile QCD-66c26]
gi|255091554|ref|ZP_05321032.1| putative methylase [Clostridium difficile CIP 107932]
gi|255515971|ref|ZP_05383647.1| putative methylase [Clostridium difficile QCD-97b34]
gi|255649062|ref|ZP_05395964.1| putative methylase [Clostridium difficile QCD-37x79]
gi|260682253|ref|YP_003213538.1| methylase [Clostridium difficile CD196]
gi|260685852|ref|YP_003216985.1| methylase [Clostridium difficile R20291]
gi|306519175|ref|ZP_07405522.1| putative methylase [Clostridium difficile QCD-32g58]
gi|384359820|ref|YP_006197672.1| methylase [Clostridium difficile BI1]
gi|423090193|ref|ZP_17078502.1| NOL1/NOP2/sun family protein [Clostridium difficile 70-100-2010]
gi|115249569|emb|CAJ67386.1| putative RNA methyltransferase [Clostridium difficile 630]
gi|260208416|emb|CBA60960.1| putative methylase [Clostridium difficile CD196]
gi|260211868|emb|CBE02298.1| putative methylase [Clostridium difficile R20291]
gi|357556979|gb|EHJ38548.1| NOL1/NOP2/sun family protein [Clostridium difficile 70-100-2010]
Length = 436
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 91/199 (45%), Gaps = 11/199 (5%)
Query: 14 LPEAFLDFLKE---NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLS 70
LP+ FL+ ++E + D + S +S +R+ T + + EL L ++ W
Sbjct: 4 LPKEFLEDIEEILKDEYDDFIKSYEESKTTGLRINTLKIDKKKLFDLEL-FDLNQIPWAE 62
Query: 71 -GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
GFY + + ++ G Y + ++ + + +I G+ VLD+CAAPG K IL
Sbjct: 63 EGFYYDDKIDRPGRNPLHEAGAYYLQEPSAMSVIPKADIKEGEKVLDMCAAPGGKSTYIL 122
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT----TFSLAPLRLLLD- 184
+ D+G + ++ R+ A L+++ C + D TF+ ++++D
Sbjct: 123 SKLNDTGLLVSNEINASRIKALGENLERFG-ARNCIITNTDSNSLRKTFNGYFDKVIIDA 181
Query: 185 PGSCNSVLQEKDDTFREWT 203
P S + ++ + +W+
Sbjct: 182 PCSGQGMFRKDEVAISDWS 200
>gi|422224063|ref|ZP_16383871.1| sun protein [Pseudomonas avellanae BPIC 631]
gi|407992706|gb|EKG34277.1| sun protein [Pseudomonas avellanae BPIC 631]
Length = 448
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L ++ G VLD C APG K C +L++ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVA---------DGTTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL R L++ LG L A DG F R+LLD P S V++
Sbjct: 280 RLVRVRENLER--LGLEAELIAADARDTAQWWDGKPFQ----RILLDAPCSATGVIRRHP 333
Query: 197 D 197
D
Sbjct: 334 D 334
>gi|239905251|ref|YP_002951990.1| hypothetical protein DMR_06130 [Desulfovibrio magneticus RS-1]
gi|239795115|dbj|BAH74104.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 423
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S+A + G I+ D +S L+ AG VLD+CAAPG K + ++G +G V G
Sbjct: 60 LGASLAARFGYIHIQDRSSMLPPLLLDPPAGARVLDMCAAPGGKTGFLAQLVGPTGFVLG 119
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVL 192
+ + RLA R L + +L A+ T S A L L GS +L
Sbjct: 120 NEPSPDRLATLRQTLFRESL--------ANTATCSFADLSPQLPAGSFTHIL 163
>gi|14520839|ref|NP_126314.1| proliferating-cell nucleolar antigen P120, [Pyrococcus abyssi GE5]
gi|74581685|sp|Q9V106.1|TRCM_PYRAB RecName: Full=tRNA (cytosine(49)-C(5))-methyltransferase
gi|5458055|emb|CAB49545.1| Sun/NOL1/NOP2 nucleolar protein [Pyrococcus abyssi GE5]
gi|380741383|tpe|CCE70017.1| TPA: proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi GE5]
Length = 311
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 20/175 (11%)
Query: 42 IRLKTGNEADLEEIEA--ELKCKLEKVVWLSG--FYSLPPDIKIATSMAYKQGKIYGIDA 97
IR+ T + +L+EI+A E K +LE + W G FY D+ + Y G I +A
Sbjct: 39 IRINTL-KGNLKEIKALLEEKFELEPIPWTKGEGFYIKSYDVNYGQLIEYSLGLIIPQEA 97
Query: 98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHR-------LAA 150
+S L+ + +LD+ AAPG+K + + + G + D R R L
Sbjct: 98 SSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANLTR 157
Query: 151 CRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSV-LQEKDDTF-REWT 203
L+ K + D F TF R+LLD C+SV + K+ F R W+
Sbjct: 158 AGVLIAKVTVKDGA-YFARYENTFD----RVLLD-APCSSVGMIRKNFKFARTWS 206
>gi|149200044|ref|ZP_01877070.1| tRNA and rRNA cytosine-C5-methylase [Lentisphaera araneosa
HTCC2155]
gi|149136917|gb|EDM25344.1| tRNA and rRNA cytosine-C5-methylase [Lentisphaera araneosa
HTCC2155]
Length = 407
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 20/159 (12%)
Query: 55 IEAELKCKL------------EKVVWLS--GFYSLPPDIKIATSMAYKQGKIYGIDAASG 100
+EAEL C+L E + W S FY + K + Q Y D A+
Sbjct: 168 LEAELNCRLINYDNHDLLSPLEDLAWDSPFQFYKINDAAKFISQTP--QENFYIQDPATS 225
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR-TLLQKYA 159
+S L + + DLC+APG K MI ++ +G V D++ RL R L +
Sbjct: 226 LCISLLKPQKDEVIADLCSAPGGKTLMISHLLEGTGQVFASDISEKRLERLRENLAHQSN 285
Query: 160 LGDRCRLFVADGTTFSLAPLRLLLD-PGSCNSVLQEKDD 197
+ +C A + +S +LLD P S VL+ K D
Sbjct: 286 VTVQC--LDARSSDYSEKFDAILLDVPCSNTGVLRRKPD 322
>gi|448244229|ref|YP_007408282.1| 16S rRNA m(5)C967 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
gi|445214593|gb|AGE20263.1| 16S rRNA m(5)C967 methyltransferase, SAM-dependent [Serratia
marcescens WW4]
Length = 429
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 73/168 (43%), Gaps = 31/168 (18%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G + DA++ V L+ G+ +LDLCAAPG K IL+ V VD+
Sbjct: 223 FAEGWVTVQDASAQGCVDLLDPQDGEQILDLCAAPGGKTTHILE-AAPKAHVMAVDIDEQ 281
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTT---------FSLAPLRLLLD-PGSCNSVLQEKD 196
RLA + LQ+ L +L DG T F R+LLD P S V++
Sbjct: 282 RLARVKENLQRLRLHAEVKL--GDGRTPQQWCGDKQFD----RILLDAPCSATGVIRRHP 335
Query: 197 DTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIV 244
D I W R R + A A +++E E ++ +SG V
Sbjct: 336 D--------IKWLRRDRDI------AELAALQAEILEAVWPHLKSGGV 369
>gi|375091698|ref|ZP_09737986.1| ribosomal RNA small subunit methyltransferase B [Helcococcus kunzii
ATCC 51366]
gi|374562585|gb|EHR33912.1| ribosomal RNA small subunit methyltransferase B [Helcococcus kunzii
ATCC 51366]
Length = 422
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 87 YKQGKIYGIDAASGAAVSA-LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+K+G ++ I S VS LN VLDLCAAPG+K +L I+ ++G V D+A+
Sbjct: 218 FKEG-LFTIQDQSSILVSEILNPKENSSVLDLCAAPGSKSTHLLQIMNNNGKVVANDIAK 276
Query: 146 HRLAACRTLLQKYALGD 162
+L + ++ L +
Sbjct: 277 DKLDKIKDNFERLQLSN 293
>gi|242237890|ref|YP_002986071.1| 16S rRNA methyltransferase B [Dickeya dadantii Ech703]
gi|242129947|gb|ACS84249.1| sun protein [Dickeya dadantii Ech703]
Length = 431
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++QG I DA++ L+ + +LDLCAAPG K IL+ I V VDV
Sbjct: 222 GFEQGWITVQDASAQGCAYWLDPQNNEDILDLCAAPGGKTTHILE-IAPKARVLAVDVDE 280
Query: 146 HRLAACRTLLQK 157
HRLA + LQ+
Sbjct: 281 HRLARVKENLQR 292
>gi|257096808|sp|A7MKH5.2|RSMF_ENTS8 RecName: Full=Ribosomal RNA small subunit methyltransferase F;
AltName: Full=16S rRNA m5C1407 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmF
Length = 480
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 24/225 (10%)
Query: 14 LPEAFLDFLKEN---GLDPSVYSAADSTP--RYIR---LKTGNEADLEEIEAELKCKLEK 65
LPEAFLD ++E GL + AA P R IR LK +A L ++ A +L
Sbjct: 9 LPEAFLDVMREAMPAGLAMDDFIAACQRPLRRSIRVNTLKISVDAFLAQV-APYGWQLTP 67
Query: 66 VVWL-SGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSALNISAGD--HVLDLCA 119
V W GF+ D + + ++ + G+ Y +A+S V+AL V+D+ A
Sbjct: 68 VPWCPEGFWIERDDEDALPLGSTAEHLSGQFYIQEASSMLPVAALFADGNTPARVMDVAA 127
Query: 120 APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA-P 178
APG+K I ++ + G + + + R+ + + + + L DG F A P
Sbjct: 128 APGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGIHN-VGLTHFDGRVFGAALP 186
Query: 179 LR---LLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARE 219
+ +LLD P S V+++ D R W+ P +++ A RE
Sbjct: 187 EQFDAILLDAPCSGEGVVRKDPDALRNWS---PQSDQEIAATQRE 228
>gi|425896690|ref|ZP_18873281.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
gi|397881818|gb|EJK98306.1| ribosomal RNA small subunit methyltransferase B [Pseudomonas
chlororaphis subsp. aureofaciens 30-84]
Length = 441
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L ++ G VLD C APG K C IL++ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAAELLELAPGQRVLDACCAPGGKTCHILEVEPALAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSL----APL-RLLLD-PGSCNSVLQEKDD 197
RL + L + LG L ADG + P R+LLD P S V++ D
Sbjct: 280 RLVRVQENLDR--LGLNAELIAADGRDTAAWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|422589567|ref|ZP_16664228.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. morsprunorum
str. M302280]
gi|330876378|gb|EGH10527.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. morsprunorum
str. M302280]
Length = 448
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L ++ G VLD C APG K C +L++ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVA---------DGTTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL R L++ LG L A DG F R+LLD P S V++
Sbjct: 280 RLVRVRENLER--LGLEAELIAADARDTAQWWDGKPFQ----RILLDAPCSATGVIRRHP 333
Query: 197 D 197
D
Sbjct: 334 D 334
>gi|345018343|ref|YP_004820696.1| RNA methylase [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033686|gb|AEM79412.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 469
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWL-SGF 72
L E + DFLKE P R LK G +EE++ + ++ + W +GF
Sbjct: 17 LKEEYEDFLKEYDKKPQ------KGLRVNTLKIG----VEELKRIVPFEITPIPWCPTGF 66
Query: 73 YSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDII 132
Y + K + + G Y + + A V L+ G+ +LD+ AAPG K I I
Sbjct: 67 Y-YDKEEKAGNHLYHILGLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTTHIATKI 125
Query: 133 GDSGSVTGVDVARHRLAA 150
GD G + ++ + R+ A
Sbjct: 126 GDEGIIVANEIDKKRIKA 143
>gi|399064740|ref|ZP_10747569.1| tRNA/rRNA cytosine-C5-methylase [Novosphingobium sp. AP12]
gi|398030339|gb|EJL23754.1| tRNA/rRNA cytosine-C5-methylase [Novosphingobium sp. AP12]
Length = 390
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 58 ELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDL 117
EL E+ V +G + PP+ +I S AY +G I D S AL G+ V+DL
Sbjct: 148 ELPEGGERTVAANG-WRYPPETRIEQSAAYLEGGIEVQDTGSQLTCDALAARPGEIVIDL 206
Query: 118 CAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
CA G K + + +SG++ D R RLA
Sbjct: 207 CAGAGGKTLALAAAMENSGTLIASDADRARLA 238
>gi|194476557|ref|YP_002048736.1| Sun protein (Fmu protein) [Paulinella chromatophora]
gi|171191564|gb|ACB42526.1| Sun protein (Fmu protein) [Paulinella chromatophora]
Length = 451
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 8/173 (4%)
Query: 9 ISKLP--LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELK--CKLE 64
I LP L L + + GL+ ++ DS P +R+ N + + + A +K K +
Sbjct: 166 IHSLPNWLTNNLLSWRGQMGLEAFAVTSNDSPPIDLRINPLNTSRAQVLHALIKLGIKAQ 225
Query: 65 KVVWLS-GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
+ LS G L + +K G D A+ L+ G VLD+C+APG
Sbjct: 226 PLPGLSQGIAILGRLGNLQILPGFKLGHWCIQDRAAQWISPLLDPHPGHRVLDVCSAPGG 285
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG-DRCRLFVADGTTFS 175
K I +++GD G + +D ++ RL + +L LG VADG T S
Sbjct: 286 KSTHIAELMGDVGEIWALDSSKVRLQ--KVVLNAKRLGLQTIHTLVADGITIS 336
>gi|333378844|ref|ZP_08470571.1| hypothetical protein HMPREF9456_02166 [Dysgonomonas mossii DSM
22836]
gi|332885656|gb|EGK05902.1| hypothetical protein HMPREF9456_02166 [Dysgonomonas mossii DSM
22836]
Length = 455
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 60 KCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALN---ISAGDHVLD 116
K L+KV+W Y LP + G Y +A+S A + +LD
Sbjct: 43 KLFLDKVLWTESGYYLPQRPSFTFDPLFHAGCYYVQEASSMFIEQAFRQYVVGGNVRILD 102
Query: 117 LCAAPGAKLCMILDIIGDSGSVTGVDVARHR 147
LCAAPG K +I D++G+S + +V R R
Sbjct: 103 LCAAPGGKSTLIADVMGESSLLVSNEVIRTR 133
>gi|410629255|ref|ZP_11339959.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
mesophila KMM 241]
gi|410151051|dbj|GAC26728.1| ribosomal RNA small subunit methyltransferase B [Glaciecola
mesophila KMM 241]
Length = 437
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I T Y +G D A+ A L D VLD CAAPG K C IL++ D +
Sbjct: 221 ITTLPGYDEGWFAVQDGAAQLAAGLLGSQPNDRVLDCCAAPGGKTCHILELQPDIATCVA 280
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADG---TTFSLAPL--RLLLD-PGSCNSVLQE 194
+D+ RL L + LG + L D T++ L R+LLD P S +++
Sbjct: 281 IDIESSRLKRIEENLTR--LGHQATLICGDASKPTSWWDGQLFDRILLDAPCSATGIIRR 338
Query: 195 KDD 197
D
Sbjct: 339 HPD 341
>gi|397906023|ref|ZP_10506850.1| Ribosomal RNA small subunit methyltransferase B [Caloramator
australicus RC3]
gi|397160937|emb|CCJ34185.1| Ribosomal RNA small subunit methyltransferase B [Caloramator
australicus RC3]
Length = 446
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVT 139
+I + G Y D +S A LN G+ VLD+CAAPG K + +++ ++G +
Sbjct: 221 QIEKMQEFLDGLFYVQDQSSMMASIILNPKPGEKVLDMCAAPGGKATHMAELMENTGEII 280
Query: 140 GVDVARHRL 148
DV H++
Sbjct: 281 AFDVHEHKI 289
>gi|406986579|gb|EKE07138.1| hypothetical protein ACD_18C00175G0001 [uncultured bacterium]
Length = 320
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 9/148 (6%)
Query: 9 ISKLPLPEAFLD-----FLKENGLDP-SVYSAADSTPRYIRLKTGNEADLEEIEAELKCK 62
+ K+ LPE LD F + N + + A +T R LK + ++ +I + K
Sbjct: 1 MPKINLPEKLLDRLNLIFGQSNAQKILTTFKARQTTFRVNTLK-NDRTEVLQILQQKGFK 59
Query: 63 LEKVVWLSGFYSL--PPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
+++V W S + L ++ + + GKIY AS V L+ GD VLDL +A
Sbjct: 60 VKRVTWFSDAFILENKSQSELMKTDLFLNGKIYLQSLASMVPVVVLDPKVGDKVLDLTSA 119
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRL 148
PG+K I ++ G + ++ + R
Sbjct: 120 PGSKTSQIAMMMKKDGELVANELDKIRF 147
>gi|325912622|ref|ZP_08175005.1| NOL1/NOP2/sun family protein [Lactobacillus iners UPII 60-B]
gi|325478043|gb|EGC81172.1| NOL1/NOP2/sun family protein [Lactobacillus iners UPII 60-B]
Length = 246
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ + +I G++VLDLCAAPG K +I + + G + +++ R
Sbjct: 77 GYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLKNEGILVANEISSKRAK 136
Query: 150 ACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD------PGSCNSVLQEKDDTFREWT 203
R L+K+ G + + + + D P S + ++ DD R W+
Sbjct: 137 ELRENLEKW--GTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGEGMFRKSDDAIRYWS 194
>gi|407473526|ref|YP_006787926.1| ribosomal RNA small subunit methyltransferase F [Clostridium
acidurici 9a]
gi|407050034|gb|AFS78079.1| ribosomal RNA small subunit methyltransferase F [Clostridium
acidurici 9a]
Length = 458
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 62 KLEKVVWL-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
KLE+V W+ GFY +++ Y G Y + ++ V L++ D VLD+ AA
Sbjct: 53 KLEQVPWIKEGFYIEEDELRPGKHPHYHCGLYYLQEPSAMIPVEVLDVKPNDKVLDISAA 112
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAA 150
PG K I + +G + D++ R+ A
Sbjct: 113 PGGKSTQIASKLNGTGLLVANDISPKRIKA 142
>gi|269962312|ref|ZP_06176663.1| NOL1/NOP2/sun family protein [Vibrio harveyi 1DA3]
gi|269832972|gb|EEZ87080.1| NOL1/NOP2/sun family protein [Vibrio harveyi 1DA3]
Length = 478
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 92/209 (44%), Gaps = 20/209 (9%)
Query: 14 LPEAFLDFLK-----ENGLDPSVYSAADSTPRYIR---LKTGNEADLEEIEAELKCKLEK 65
+PEAFL+ ++ ++ + S + IR LK EA LE EA+ KL
Sbjct: 7 IPEAFLEKIQTILPAHLNMEDFIASCQKPLRKSIRVNTLKISVEAFLERAEAK-GWKLSP 65
Query: 66 VVWLSGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCAA 120
V W + + D + + + + G Y +A+S VSAL N + D VLD AA
Sbjct: 66 VPWCETGFWIDADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNNESYDAVLDTAAA 125
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF-SLAPL 179
PG+K I ++ + G + + A R+ +++ + + L DG F P
Sbjct: 126 PGSKTTQIAALMNNEGVLVANEYAASRVKVLHANIERCGVRN-AALSNFDGRVFGGWLPE 184
Query: 180 RL---LLD-PGSCNSVLQEKDDTFREWTS 204
+ LLD P S +++ +D + WT
Sbjct: 185 QFDAVLLDAPCSGEGTVRKDEDAMKNWTQ 213
>gi|400406380|ref|YP_006589128.1| ribosomal RNA small subunit methyltransferase RsmB [secondary
endosymbiont of Heteropsylla cubana]
gi|400364633|gb|AFP85700.1| ribosomal RNA small subunit methyltransferase RsmB [secondary
endosymbiont of Heteropsylla cubana]
Length = 432
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 21/149 (14%)
Query: 71 GFYSLPPDIKIATSM------AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAK 124
G +LP I++ T + +G + DA+S AV L G+ +LDLCAAPG K
Sbjct: 202 GHKTLPYAIRLETPYTARILPGFYEGWVSVQDASSQGAVVLLAPKNGEKILDLCAAPGCK 261
Query: 125 LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY------ALGDRCRLFV-ADGTTFSLA 177
IL+ I + V VD+ R+ L + +GD C+ + G F
Sbjct: 262 TTHILE-IAPAAQVVAVDIDIKRVIRIYENLTRLKMQANVVIGDGCKPNTWSSGIVFD-- 318
Query: 178 PLRLLLDPG-SCNSVLQEKDDTFREWTSR 205
R+LLDP S V++ D +W R
Sbjct: 319 --RILLDPPCSATGVIRRHPDV--KWLRR 343
>gi|421858977|ref|ZP_16291226.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus popilliae ATCC
14706]
gi|410831496|dbj|GAC41663.1| tRNA and rRNA cytosine-C5-methylase [Paenibacillus popilliae ATCC
14706]
Length = 454
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 24/191 (12%)
Query: 37 STPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDI-------KIATSMAYKQ 89
S+ R RL+ EA L E+ A+ + + +L PD +A S Y+
Sbjct: 172 SSARVNRLRGTREALLAELRAD--------GYRAEASALSPDGIVAAGAGNLAHSAWYRA 223
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G++ D +S V AL G +LD CAAPG K I + +GD G VT DV +++
Sbjct: 224 GRLSVQDESSMLVVEALRPEPGMRILDCCAAPGGKSTHIAERMGDRGEVTANDVHAYKVG 283
Query: 150 ACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIP-- 207
L+++ A R L A L L P S ++VL + T R P
Sbjct: 284 ----LIEEQA--TRLGLTSLHVMNVDAAELGQALPPASFDAVLLDAPCTGFGVIRRKPDI 337
Query: 208 -WKERKRAVKA 217
W +R+ V A
Sbjct: 338 KWTKREEDVAA 348
>gi|303247304|ref|ZP_07333577.1| Fmu (Sun) domain protein [Desulfovibrio fructosovorans JJ]
gi|302491218|gb|EFL51107.1| Fmu (Sun) domain protein [Desulfovibrio fructosovorans JJ]
Length = 429
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ +S+A + G I+ D +S L+ AG VLD+CAAPG K + ++G +G V G
Sbjct: 63 LGSSLAARFGYIHIQDRSSMLPPLLLDPPAGARVLDMCAAPGGKTGFLAQLVGPTGFVLG 122
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTTF--SLAPLRLLLDPGSCN--SVLQEKD 196
+ + RLA R L + L + D + F A +LLDP C+ L +
Sbjct: 123 NEPSPDRLATLRQTLLRENLANTATCAQTDLSPFFPEGAFTHILLDP-PCSGWGTLDKNP 181
Query: 197 DTFREWTS 204
R W+
Sbjct: 182 QAARIWSG 189
>gi|259500608|ref|ZP_05743510.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus iners DSM 13335]
gi|302191297|ref|ZP_07267551.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus iners AB-1]
gi|259167992|gb|EEW52487.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus iners DSM 13335]
Length = 469
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ + +I G++VLDLCAAPG K +I + + G + +++ R
Sbjct: 77 GYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLKNEGVLVANEISSKRAK 136
Query: 150 ACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD------PGSCNSVLQEKDDTFREWT 203
R L+K+ G + + + + L D P S + ++ DD + W+
Sbjct: 137 ELRENLEKW--GTSNVIITNESPERLVKKFKNLFDTIIVDAPCSGEGMFRKSDDAIKYWS 194
Query: 204 S 204
Sbjct: 195 Q 195
>gi|374851128|dbj|BAL54097.1| ribosomal RNA small subunit methyltransferase B [uncultured gamma
proteobacterium]
Length = 431
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ QG + DAA+ A L + G VLD+CAAPG K IL+ + V VDV++
Sbjct: 219 FAQGLVSVQDAAAQLAAPLLAMQPGQRVLDVCAAPGGKTLHILESCPELAEVVAVDVSQE 278
Query: 147 RLAACRTLLQKYALGDRCRLFVA--------DGTTFSLAPLRLLLD-PGSCNSVLQEKDD 197
RL R L + + RL A DG F R+L+D P + + V++ D
Sbjct: 279 RLQGVRENLARAGAAGKVRLICADARDPSWWDGRHFE----RILVDAPCTASGVVRRHPD 334
>gi|167036928|ref|YP_001664506.1| NOL1/NOP2/sun family RNA methylase [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115347|ref|YP_004185506.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166855762|gb|ABY94170.1| putative RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928438|gb|ADV79123.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 460
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWL-SGF 72
L E + DFLKE P R LK G +EE + + ++ + W +GF
Sbjct: 17 LKEEYEDFLKEYDKKPQ------KGLRVNTLKIG----VEEFKKIVPFEITPIPWCPTGF 66
Query: 73 YSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDII 132
Y + K + + G Y + + A V L+ G+ +LD+ AAPG K I I
Sbjct: 67 Y-YDKEEKAGNHLYHILGLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTTHIATKI 125
Query: 133 GDSGSVTGVDVARHRLAA 150
GD G + ++ + R+ A
Sbjct: 126 GDEGIIVANEIDKKRIKA 143
>gi|399003945|ref|ZP_10706590.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM18]
gi|398121235|gb|EJM10872.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM18]
Length = 436
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPKLAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R L + LG L AD T + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLAR--LGLSAELIAADARDTATWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|317500362|ref|ZP_07958586.1| NOL1/NOP2/sun family protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|336438948|ref|ZP_08618569.1| hypothetical protein HMPREF0990_00963 [Lachnospiraceae bacterium
1_1_57FAA]
gi|316898117|gb|EFV20164.1| NOL1/NOP2/sun family protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|336017438|gb|EGN47200.1| hypothetical protein HMPREF0990_00963 [Lachnospiraceae bacterium
1_1_57FAA]
Length = 468
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 5/150 (3%)
Query: 63 LEKVVWL-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
L + W+ +GFY + A Y G Y + ++ + L I AGD VLD+CAAP
Sbjct: 54 LRPIPWIENGFYYDGEKYQPAKHPYYFAGLYYLQEPSAMTPANRLPIEAGDRVLDVCAAP 113
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL-- 179
G K + + SG + D++ R ++ + +G+ L G + P
Sbjct: 114 GGKATELGAKLNGSGVLIANDLSNSRARGLLKNIELFGIGNVLVLSEEPGKLVNYFPEYF 173
Query: 180 -RLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
++L+D P S + ++ + W P
Sbjct: 174 DKILIDAPCSGEGMFRKDRKMVKAWEEHGP 203
>gi|440635284|gb|ELR05203.1| hypothetical protein GMDG_07244 [Geomyces destructans 20631-21]
Length = 259
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
LNI+ G+HVLD+ PG I +I+G SGSV G+D ++ R+A
Sbjct: 29 LNITTGNHVLDVGCGPGDITAHISNIVGPSGSVVGIDPSKERIA 72
>gi|392939472|ref|ZP_10305116.1| NOL1/NOP2/sun family putative RNA methylase [Thermoanaerobacter
siderophilus SR4]
gi|392291222|gb|EIV99665.1| NOL1/NOP2/sun family putative RNA methylase [Thermoanaerobacter
siderophilus SR4]
Length = 460
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWL-SGF 72
L E + DFLKE P R LK G +EE + + ++ + W +GF
Sbjct: 17 LKEEYEDFLKEYDKKPQ------KGLRVNTLKIG----VEEFKKIVPFEITPIPWCPTGF 66
Query: 73 YSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDII 132
Y + K + + G Y + + A V L+ G+ +LD+ AAPG K I I
Sbjct: 67 Y-YDKEEKAGNHLYHILGLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTTHIATKI 125
Query: 133 GDSGSVTGVDVARHRLAA 150
GD G + ++ + R+ A
Sbjct: 126 GDEGIIVANEIDKKRIKA 143
>gi|344198260|ref|YP_004782586.1| sun protein [Acidithiobacillus ferrivorans SS3]
gi|343773704|gb|AEM46260.1| sun protein [Acidithiobacillus ferrivorans SS3]
Length = 432
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 5/132 (3%)
Query: 29 PSVYSAADSTPR-YIRLKTG--NEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSM 85
P++ +A ++TP ++R+ T + + ++ AE + + V W + LP + +AT
Sbjct: 169 PAIAAANNTTPPLWLRVNTQRVDPGNYRQLLAEQGLEAKGVAWSAAALCLPASVPVATLP 228
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+ G + D A+ A L G+ +LD CAAPG K + + + + +D +
Sbjct: 229 GWDAGWVAVQDGAAQMAAHILAPQEGERILDACAAPGGKTAHLWAL--GATRLDALDRSA 286
Query: 146 HRLAACRTLLQK 157
RL R L++
Sbjct: 287 ERLKRVREALER 298
>gi|198426740|ref|XP_002131278.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 418
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
YK G + D +S LN S HV+D CAAPG K + I+ ++G + +D +
Sbjct: 192 YKLGHLIFQDKSSCMPAFVLNPSPNSHVIDACAAPGNKTSHLSAIMNNTGKLFAIDRSSE 251
Query: 147 RLAACRTLLQKYALGDRCRLFVAD 170
R+ + L+K ++ + C + +D
Sbjct: 252 RIEVMKKQLKKASVKN-CEVINSD 274
>gi|254294173|ref|YP_003060196.1| Fmu (Sun) domain-containing protein [Hirschia baltica ATCC 49814]
gi|254042704|gb|ACT59499.1| Fmu (Sun) domain protein [Hirschia baltica ATCC 49814]
Length = 435
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 38 TPRYIRLKTGNEADLEEIEAELK-CKLEKVVWLSGFYSLP-PDIKI-ATSM----AYKQG 90
P +R+ T +A++E++E L+ E + L Y +P PD + A S+ AY +G
Sbjct: 152 APVDLRINT-LKAEVEKVEKALRSVHAEPIPTLKNGYRIPAPDPSVRANSVESIPAYSKG 210
Query: 91 KIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAA 150
+ DA S A + N G+ VLD CA G K + + + G + D+ RL+A
Sbjct: 211 WVEVQDAGSQMAAAGANAQPGEQVLDYCAGGGGKSLAMASTMQNKGQIYAYDIEGRRLSA 270
Query: 151 CRTLLQK 157
LQ+
Sbjct: 271 MIPRLQR 277
>gi|335284221|ref|XP_003354543.1| PREDICTED: putative methyltransferase NSUN5 isoform 2 [Sus scrofa]
Length = 391
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 88/222 (39%), Gaps = 36/222 (16%)
Query: 35 ADSTPRYIRLKT--------------------GNEADLEEIEAELKCK-LEKVVWLSGFY 73
A PR++R+ T G + LE+I A LK K L
Sbjct: 93 ASQVPRFVRVNTLKTRSEDVVDYFKRQGFSYQGQASSLEDIRA-LKGKCFLLDPLLPELL 151
Query: 74 SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG 133
P + Y+ G + D AS L G HV+D CAAPG K + ++
Sbjct: 152 VFPAQTDLHEHPLYQAGHLILQDKASCLPAVLLAPPPGSHVIDACAAPGNKTSHLAALLK 211
Query: 134 DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL--------RLLLDP 185
+ G + D+ RLA+ TLL + + C L A+ ++AP +LLDP
Sbjct: 212 NQGKIFAFDLDAKRLASMATLLARAGVSC-CEL--AEQDFLAVAPTDQRYRQVQYILLDP 268
Query: 186 GSCNSVLQEKDDTFREWTSRIPWKERKRAVKA-RENAASKAI 226
S + + E + P +ER RA+ ++ A S A+
Sbjct: 269 SCSGSGMLTR--RLEEPGAGAPSQERLRALAGFQQRALSHAL 308
>gi|289449902|ref|YP_003475108.1| putative ribosomal RNA small subunit methyltransferase F
[Clostridiales genomosp. BVAB3 str. UPII9-5]
gi|289184449|gb|ADC90874.1| putative ribosomal RNA small subunit methyltransferase F
[Clostridiales genomosp. BVAB3 str. UPII9-5]
Length = 573
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 6/135 (4%)
Query: 49 EADLEEIEAELKCK-----LEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAV 103
+ ++EE+ C L V W Y LP A ++ Y QG Y +A++
Sbjct: 46 KGEVEEMARNFACSYKLSPLVPVPWTKDAYYLPAGFAAAQTVEYLQGYFYLQEASAMLPA 105
Query: 104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR 163
+ L G VLDLCAAPG K + + + G + ++ R L+++
Sbjct: 106 ALLQAKPGMAVLDLCAAPGGKTTKLAADMNNQGLLLANEINLERAKVLLRNLEQWG-AKN 164
Query: 164 CRLFVADGTTFSLAP 178
L AD F+ P
Sbjct: 165 VVLTNADAAQFNRDP 179
>gi|229025307|ref|ZP_04181726.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1272]
gi|228735998|gb|EEL86574.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1272]
Length = 387
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + A+K+G + D +S AL + GD VLD CAAPG K I + + +G V
Sbjct: 162 VAHTEAFKKGFLSIQDESSMLVARALEPNEGDEVLDSCAAPGGKTTHIAERLKGTGKVMS 221
Query: 141 VDVARHRLAACRTLLQKYAL 160
+D+ H++ R + L
Sbjct: 222 LDLHAHKVRLIRQQADRLGL 241
>gi|377831247|ref|ZP_09814228.1| rRNA methylase [Lactobacillus mucosae LM1]
gi|377554925|gb|EHT16623.1| rRNA methylase [Lactobacillus mucosae LM1]
Length = 448
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDS--GSV 138
+ + ++ QG + D ++ AV ++ I+ D VLD CAAPG K I + + GSV
Sbjct: 224 VVNTDSFMQGLVTIQDESAMLAVESMTINPADQVLDACAAPGGKTVQIAAALDEKQGGSV 283
Query: 139 TGVDVARHRLAACRTLLQKYALGDR---CRL 166
T +D+ H++ Q+ + +R C+L
Sbjct: 284 TALDIHAHKIKLIEKNAQRLGVAERVHACQL 314
>gi|307132808|ref|YP_003884824.1| ribosomal RNA small subunit methyltransferase B [Dickeya dadantii
3937]
gi|306530337|gb|ADN00268.1| Ribosomal RNA small subunit methyltransferase B [Dickeya dadantii
3937]
Length = 431
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 66/158 (41%), Gaps = 27/158 (17%)
Query: 64 EKVVWLSGFYSLPPDIKIATSMA------YKQGKIYGIDAASGAAVSALNISAGDHVLDL 117
E + FY P I++ T A ++QG + DA++ + L + +LDL
Sbjct: 196 EITAYPHAFY--PDAIRLGTPCAVNQLPGFEQGWVTVQDASAQGCIHWLAPQDHEEILDL 253
Query: 118 CAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT---- 173
CAAPG K IL+ V VDV RL R LQ+ LG + DG T
Sbjct: 254 CAAPGGKTTHILE-AAPHAHVLAVDVDEQRLKRVRENLQR--LGQHAEVKCGDGRTPTEW 310
Query: 174 -----FSLAPLRLLLD-PGSCNSVLQEKDDTFREWTSR 205
F R+LLD P S V++ D +W R
Sbjct: 311 CGDKLFD----RILLDAPCSATGVIRRHPDI--KWLRR 342
>gi|297545215|ref|YP_003677517.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842990|gb|ADH61506.1| RNA methylase, NOL1/NOP2/sun family [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 459
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 12/138 (8%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWL-SGF 72
L E + DFL+E P R LK G +EE + + ++ + W +GF
Sbjct: 17 LKEEYEDFLREYDKKPQ------KGLRVNTLKIG----VEEFKKIVPFEITPIPWCPTGF 66
Query: 73 YSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDII 132
Y + K ++ + G Y + + A V L+ G+ +LD+ AAPG K I I
Sbjct: 67 Y-YDKEEKAGNNLYHVLGLYYIQEPTAMAVVEVLDPKPGEKILDVSAAPGGKTTHIATKI 125
Query: 133 GDSGSVTGVDVARHRLAA 150
GD G + ++ + R+ A
Sbjct: 126 GDEGLIVANEIDKKRMKA 143
>gi|448378077|ref|ZP_21560623.1| RNA methylase [Halovivax asiaticus JCM 14624]
gi|445654311|gb|ELZ07163.1| RNA methylase [Halovivax asiaticus JCM 14624]
Length = 302
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 56/129 (43%), Gaps = 8/129 (6%)
Query: 82 ATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGV 141
++ A G +G + S L+ G+ V D CAAPG+K + +I D G+V
Sbjct: 70 GSTWASFHGFTHGQEEVSVIPPLVLDPEPGERVWDACAAPGSKATQLAALIDDRGTVVAN 129
Query: 142 DVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQE 194
D RL+A R ++ + D +SL P R L+D P SC +++
Sbjct: 130 DNNLGRLSALRFNAERLG-ATSLAVTNDDARNYSLQPFDFDEFDRALVDVPCSCEGTIRK 188
Query: 195 KDDTFREWT 203
D EW+
Sbjct: 189 NPDALDEWS 197
>gi|424920643|ref|ZP_18344004.1| RsmB [Pseudomonas fluorescens R124]
gi|404301803|gb|EJZ55765.1| RsmB [Pseudomonas fluorescens R124]
Length = 436
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSL----APL-RLLLD-PGSCNSVLQEKDD 197
RL + L++ LG L ADG + P R+LLD P S V++ D
Sbjct: 280 RLVRVKENLER--LGLSAELIAADGRDTAAWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|385825826|ref|YP_005862168.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii DPC 6026]
gi|329667270|gb|AEB93218.1| tRNA/rRNA methyltransferase [Lactobacillus johnsonii DPC 6026]
Length = 463
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ +LN+ GD VLDLCAAPG K + + +SG + ++++ R
Sbjct: 76 GYVYSQDPSAMYPAVSLNVKPGDKVLDLCAAPGGKSTALASSLDNSGLLVVNEISKSRAK 135
Query: 150 ACRTLLQKYA 159
R L+++
Sbjct: 136 DLRENLERWG 145
>gi|374326205|ref|YP_005084405.1| sun family protein [Pyrobaculum sp. 1860]
gi|356641474|gb|AET32153.1| sun family protein [Pyrobaculum sp. 1860]
Length = 417
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
D AS AV +L GD ++DL AAPG K ++ + + VD+++ R+A + LL
Sbjct: 221 DLASVYAVLSLKPEPGDRIVDLAAAPGMKTSLVAQLAEGRAKIVAVDLSQKRVARMKQLL 280
Query: 156 QKYALGDRCRLFVAD 170
++ GD + +D
Sbjct: 281 RRVGAGDAVEVVRSD 295
>gi|357239284|ref|ZP_09126619.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
ictaluri 707-05]
gi|356751853|gb|EHI68983.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
ictaluri 707-05]
Length = 426
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
A S +K G I D S L I + +LD C+APG K + + SG +T
Sbjct: 206 FAASDYFKNGNITIQDETSQLVAPTLEIKGDEKILDACSAPGGKTVHMASYLT-SGQITA 264
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+D+ H+LA R ++ L D+ V D
Sbjct: 265 LDLYDHKLALVRENAERLNLSDKIETKVMDA 295
>gi|227515682|ref|ZP_03945731.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus fermentum
ATCC 14931]
gi|227085930|gb|EEI21242.1| rRNA SAM-dependent methyltransferase RmsB [Lactobacillus fermentum
ATCC 14931]
Length = 448
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ + A+K G + D ++ AV +++++ + VLD CAAPG K I + + D G V
Sbjct: 226 VLKTAAFKNGVVTIQDESAMLAVESMHLTGHERVLDACAAPGGKTVQIAEALTD-GEVYA 284
Query: 141 VDVARHRLAACRTLLQKYALGDRC 164
+D+ RH++ Q+ + +R
Sbjct: 285 LDIHRHKVGLIEKNAQRMGVDNRV 308
>gi|83950714|ref|ZP_00959447.1| ribosomal RNA small subunit methyltransferase B, putative
[Roseovarius nubinhibens ISM]
gi|83838613|gb|EAP77909.1| ribosomal RNA small subunit methyltransferase B, putative
[Roseovarius nubinhibens ISM]
Length = 410
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 70 SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
SG L +++ Y +G + DAA+ V L+ G++VLDLCAAPG K L
Sbjct: 178 SGSVRLTDPGQVSALPGYAEGAFWVQDAAAAMPVRILDPKPGENVLDLCAAPGGK---TL 234
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL-RLLLD-PGS 187
I S T +D++ R+ + L++ L C D + P +LLD P S
Sbjct: 235 QIAASGASATALDLSAQRMQRVQENLERTGLAASCE--TGDALRHTGGPYDAILLDAPCS 292
Query: 188 CNSVLQEKDD 197
L+ D
Sbjct: 293 ATGTLRRHPD 302
>gi|406659599|ref|ZP_11067737.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
iniae 9117]
gi|405577708|gb|EKB51856.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
iniae 9117]
Length = 440
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
ATS + G I D +S L I +H+LD C+APG K + + SG VT
Sbjct: 220 FATSDYFTSGAITIQDESSQLVAPTLQIEGHEHILDACSAPGGKTLHMASYLS-SGRVTA 278
Query: 141 VDVARHRLAACRTLLQKYALGDR 163
+D+ +H+L + ++ L D+
Sbjct: 279 LDIYQHKLDLVKENAKRLGLTDK 301
>gi|311251116|ref|XP_003124450.1| PREDICTED: putative methyltransferase NSUN5 isoform 1 [Sus scrofa]
Length = 466
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 88/223 (39%), Gaps = 36/223 (16%)
Query: 35 ADSTPRYIRLKT--------------------GNEADLEEIEAELKCK-LEKVVWLSGFY 73
A PR++R+ T G + LE+I A LK K L
Sbjct: 131 ASQVPRFVRVNTLKTRSEDVVDYFKRQGFSYQGQASSLEDIRA-LKGKCFLLDPLLPELL 189
Query: 74 SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG 133
P + Y+ G + D AS L G HV+D CAAPG K + ++
Sbjct: 190 VFPAQTDLHEHPLYQAGHLILQDKASCLPAVLLAPPPGSHVIDACAAPGNKTSHLAALLK 249
Query: 134 DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL--------RLLLDP 185
+ G + D+ RLA+ TLL + + C L A+ ++AP +LLDP
Sbjct: 250 NQGKIFAFDLDAKRLASMATLLARAGVSC-CEL--AEQDFLAVAPTDQRYRQVQYILLDP 306
Query: 186 GSCNSVLQEKDDTFREWTSRIPWKERKRAVKA-RENAASKAIV 227
S + + E + P +ER RA+ ++ A S A+
Sbjct: 307 SCSGSGMLTR--RLEEPGAGAPSQERLRALAGFQQRALSHALT 347
>gi|297526431|ref|YP_003668455.1| Fmu (Sun) domain-containing protein [Staphylothermus hellenicus DSM
12710]
gi|297255347|gb|ADI31556.1| Fmu (Sun) domain protein [Staphylothermus hellenicus DSM 12710]
Length = 449
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 44 LKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAV 103
LKTG E LE + E+K + + +S P S +++G I + A+ A
Sbjct: 192 LKTGVEEVLEILRREVKW-VRRSSIVSTIIKFPGPYNFDKSDLFRKGYIVIQEEAAAVAS 250
Query: 104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157
L+ G V+D+ AAPG K I +++G+ G + DV + R+ + +L++
Sbjct: 251 LILDPKPGMTVVDMAAAPGGKTQHIAELMGNEGVIYAFDVDKKRIDRMQGILRR 304
>gi|159045573|ref|YP_001534367.1| ribosomal RNA small subunit methyltransferase B [Dinoroseobacter
shibae DFL 12]
gi|157913333|gb|ABV94766.1| ribosomal RNA small subunit methyltransferase B [Dinoroseobacter
shibae DFL 12]
Length = 443
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 62 KLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
+L VV +G L +++ Y +G + DAA+ AL G VLDLCAAP
Sbjct: 190 RLGAVVLPTGGLRLSDAGQVSQLPGYAEGAWWVQDAAASLPARALGPVVGARVLDLCAAP 249
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175
G K L + VT +D++ R+A R L + L + +ADG T++
Sbjct: 250 GGK---TLQLAAAGAQVTALDISDARVARLRENLARTGLA--AEVVIADGLTYA 298
>gi|398961100|ref|ZP_10678498.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM30]
gi|398153051|gb|EJM41558.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM30]
Length = 436
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L+++ G VLD C APG K C IL+ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLDLAPGQRVLDACCAPGGKTCHILEAEPALAGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSL----APL-RLLLD-PGSCNSVLQEKDD 197
RL + L++ LG L ADG + P R+LLD P S V++ D
Sbjct: 280 RLVRVKENLER--LGLSAELIAADGRDTAAWWDGKPFQRILLDAPCSATGVIRRHPD 334
>gi|295424864|ref|ZP_06817579.1| NOL1/NOP2/sun family protein [Lactobacillus amylolyticus DSM 11664]
gi|295065430|gb|EFG56323.1| NOL1/NOP2/sun family protein [Lactobacillus amylolyticus DSM 11664]
Length = 463
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 10/142 (7%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D A+ I G VLDLCAAPG K + + + ++G + +++ R+
Sbjct: 76 GTVYSQDPAAMFPAYLAQIEPGQKVLDLCAAPGGKTTALGEALQNAGLLVANEISSVRVK 135
Query: 150 ACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLD-PGSCNSVLQEKDDTFREW 202
A R L+++ + + + + +F+LA + +L+D P S + ++ D W
Sbjct: 136 ALRENLERWGISNA---LITNDDSFALAKVFPEFFDVILVDAPCSGEGMFRKNPDAVSYW 192
Query: 203 TSRIPWKERKRAVKARENAASK 224
+ RKR + A K
Sbjct: 193 SPDYVLTCRKRQQEILTEAVKK 214
>gi|433638803|ref|YP_007284563.1| NOL1/NOP2/sun family putative RNA methylase [Halovivax ruber XH-70]
gi|433290607|gb|AGB16430.1| NOL1/NOP2/sun family putative RNA methylase [Halovivax ruber XH-70]
Length = 302
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 8/128 (6%)
Query: 83 TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVD 142
++ A G +G + S L+ G+ V D CAAPG+K + +I D G+V D
Sbjct: 71 STWASFHGFTHGQEEVSVIPPLVLDPEPGERVWDACAAPGSKATQLAALIDDRGTVVAND 130
Query: 143 VARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEK 195
RL+A R ++ + D +SL P R L+D P SC +++
Sbjct: 131 NNLGRLSALRFNAERLG-ATSLAVTNDDARNYSLQPFDFDEFDRALVDVPCSCEGTIRKN 189
Query: 196 DDTFREWT 203
D EW+
Sbjct: 190 PDALDEWS 197
>gi|346468509|gb|AEO34099.1| hypothetical protein [Amblyomma maculatum]
Length = 441
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%)
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
D ASG AV AL+ G +LD CAAPG K ++ ++G + VD RL A R L+
Sbjct: 225 DKASGMAVVALDPWPGAVLLDACAAPGMKTSYAAALMQNTGHILAVDKCGERLQALRDLM 284
Query: 156 QKYALGDRCRLFVAD 170
Q C++ AD
Sbjct: 285 QVGGFKSICKVQEAD 299
>gi|134299563|ref|YP_001113059.1| sun protein [Desulfotomaculum reducens MI-1]
gi|134052263|gb|ABO50234.1| sun protein [Desulfotomaculum reducens MI-1]
Length = 453
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 11/119 (9%)
Query: 35 ADSTPRYIRLKTGNEADLEEIEAE-LKCKLEKVV----WLSGFYSLPPDIKIATSMAYKQ 89
A +T R LK E + ++AE ++ + K V LSGF S T +++
Sbjct: 181 APNTVRTNTLKISREDLMARLKAEGVEARETKFVPEGLNLSGFLSY------RTLKSFQG 234
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRL 148
G D +S LN S+G VLD+ +APG K + ++GDSG + D+ H+L
Sbjct: 235 GFFQVQDESSMLVAHVLNPSSGAKVLDVASAPGGKTTHLAQLMGDSGQIIAFDIYSHKL 293
>gi|429105035|ref|ZP_19166904.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
malonaticus 681]
gi|426291758|emb|CCJ93017.1| Ribosomal RNA small subunit methyltransferase F [Cronobacter
malonaticus 681]
Length = 480
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 101/224 (45%), Gaps = 22/224 (9%)
Query: 14 LPEAFLDFLKEN---GLDPSVYSAADSTP--RYIRLKTGNEADLEEIE--AELKCKLEKV 66
LPEAFLD ++E GL + AA P R IR+ T + L +E A +L V
Sbjct: 9 LPEAFLDVMREAMPAGLAMDDFIAACQRPLRRSIRVNTLKISVLTFLEQVAPYGWQLTPV 68
Query: 67 VWL-SGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSALNISAGD--HVLDLCAA 120
W GF+ D + + ++ + G+ Y +A+S V+AL V+D+ AA
Sbjct: 69 PWCPEGFWIERDDEEALPLGSTAEHLSGQFYIQEASSMLPVAALFADGNTPARVMDVAAA 128
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA-PL 179
PG+K I ++ + G + + + R+ + + + + L DG F A P
Sbjct: 129 PGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGIRN-VGLTHFDGRVFGAALPE 187
Query: 180 R---LLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARE 219
+ +LLD P S V+++ D R W+ P ++ A RE
Sbjct: 188 QFDAILLDAPCSGEGVVRKDPDALRNWS---PQSNQEIAATQRE 228
>gi|424779926|ref|ZP_18206812.1| Ribosomal RNA small subunit methyltransferase B [Catellicoccus
marimammalium M35/04/3]
gi|422843465|gb|EKU27902.1| Ribosomal RNA small subunit methyltransferase B [Catellicoccus
marimammalium M35/04/3]
Length = 452
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 8/125 (6%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG--DSGSV 138
+A S A+K+G+I D +S AL + VLD CAAPG K I + G V
Sbjct: 227 LAGSKAFKEGRITIQDESSMLVAPALQVEPQHQVLDACAAPGGKTGHIASYLDATQGGKV 286
Query: 139 TGVDVARHRLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVL 192
T +D+ +H+ + + DR D G TF+ R+L+D P S ++
Sbjct: 287 TALDIHQHKCELIEETAARLHVTDRVTAQTLDARKVGDTFAKESFDRILVDAPCSGLGLM 346
Query: 193 QEKDD 197
+ K D
Sbjct: 347 RRKPD 351
>gi|321315340|ref|YP_004207627.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5]
gi|320021614|gb|ADV96600.1| 16S rRNA methyltransferase B [Bacillus subtilis BSn5]
Length = 447
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++ G++ D +S AL+ + VLD CAAPG K I +++ + GSVT
Sbjct: 222 IAGTHFFQNGEVSIQDESSMLVARALDPKPDETVLDACAAPGGKSAHIAELMKNKGSVTS 281
Query: 141 VDVARHRL 148
+D+ +H++
Sbjct: 282 LDLHKHKV 289
>gi|428311848|ref|YP_007122825.1| ribosomal RNA small subunit methyltransferase RsmB [Microcoleus sp.
PCC 7113]
gi|428253460|gb|AFZ19419.1| ribosomal RNA small subunit methyltransferase RsmB [Microcoleus sp.
PCC 7113]
Length = 485
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+++G D+++ LN AG+ V+D CAAPG K I +++GD G++ D A
Sbjct: 269 GFREGWWTVQDSSAQLVSHLLNPQAGEVVIDACAAPGGKTTHIAELMGDQGTIWACDRAA 328
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFSL---APLRLLLD-PGSCNSVLQEKDD 197
RL + Q+ L ++ D FS + R+LLD P S L + D
Sbjct: 329 SRLKKLQENTQRLQL-QSIQICTGDSRHFSQFTDSANRVLLDAPCSGLGTLHRRPD 383
>gi|238853388|ref|ZP_04643767.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus gasseri 202-4]
gi|420147079|ref|ZP_14654355.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri CECT 5714]
gi|238833960|gb|EEQ26218.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus gasseri 202-4]
gi|398401080|gb|EJN54582.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri CECT 5714]
Length = 464
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ ALN+ G+ VLDLCAAPG K + + + G + ++++ R
Sbjct: 76 GYVYSQDPSAMYPAVALNVKPGEKVLDLCAAPGGKSTALASFLENKGLLVANEISKSRAK 135
Query: 150 ACRTLLQKYA 159
R L+++
Sbjct: 136 DLRENLERWG 145
>gi|408411001|ref|ZP_11182188.1| RNA methyltransferase Sun [Lactobacillus sp. 66c]
gi|407874834|emb|CCK83994.1| RNA methyltransferase Sun [Lactobacillus sp. 66c]
Length = 438
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+K+G++ D A+ A + + + VLD CAAPG K + + + + G VT +D+
Sbjct: 225 FKEGQVTVQDEAASLVAEAFDFTGNERVLDSCAAPGGKTIQLAEKVPE-GQVTALDIHEK 283
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPLRLLLDPGSCNSV 191
+L R Q+ + DR + D G FS +L C+ +
Sbjct: 284 KLRLVRENAQRMQVADRVKTKALDARKAGGYFSKGEFDKILIDAPCSGL 332
>gi|392543420|ref|ZP_10290557.1| 16S rRNA methyltransferase [Pseudoalteromonas piscicida JCM 20779]
Length = 427
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 16/118 (13%)
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
DAA+ A L AG+++LD CAAPG K C IL++ VT +D RL L
Sbjct: 230 DAAAQKAARLLAPQAGENILDACAAPGGKTCHILELA--DAKVTAIDADSDRLQRVEQNL 287
Query: 156 QKYALGDRCRLFVA-------DGTTFSLAPLRLLLD-PGSCNSVLQEKDDTFREWTSR 205
++ L +C A DG + R+LLD P S V++ D +W R
Sbjct: 288 ERIGLSAKCLEGDASDPEAWWDGEQYD----RILLDVPCSATGVIRRHPDI--KWLRR 339
>gi|282851807|ref|ZP_06261170.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri 224-1]
gi|282557049|gb|EFB62648.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri 224-1]
Length = 464
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ ALN+ G+ VLDLCAAPG K + + + G + ++++ R
Sbjct: 76 GYVYSQDPSAMYPAVALNVKPGEKVLDLCAAPGGKSTALASFLENKGLLVANEISKSRAK 135
Query: 150 ACRTLLQKYA 159
R L+++
Sbjct: 136 DLRENLERWG 145
>gi|428279169|ref|YP_005560904.1| hypothetical protein BSNT_02587 [Bacillus subtilis subsp. natto
BEST195]
gi|291484126|dbj|BAI85201.1| hypothetical protein BSNT_02587 [Bacillus subtilis subsp. natto
BEST195]
Length = 447
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++ G++ D +S AL+ + VLD CAAPG K I +++ + GSVT
Sbjct: 222 IAGTHFFQNGEVSIQDESSMLVARALDPKPDETVLDACAAPGGKSAHIAELMQNKGSVTS 281
Query: 141 VDVARHRL 148
+D+ +H++
Sbjct: 282 LDLHKHKV 289
>gi|340624444|ref|YP_004742897.1| putative proliferating-cell nucleolar antigen [Methanococcus
maripaludis X1]
gi|339904712|gb|AEK20154.1| putative proliferating-cell nucleolar antigen [Methanococcus
maripaludis X1]
Length = 265
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
LN S D VLD+CAAPG K + ++ + GS+ V++ ++RL + R+ + + +
Sbjct: 72 TLNPSKDDEVLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINRMGFKN 129
>gi|311110618|ref|ZP_07712015.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri MV-22]
gi|311065772|gb|EFQ46112.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri MV-22]
Length = 464
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ ALN+ G+ VLDLCAAPG K + + + G + ++++ R
Sbjct: 76 GYVYSQDPSAMYPAVALNVKPGEKVLDLCAAPGGKSTALASFLENKGLLVANEISKSRAK 135
Query: 150 ACRTLLQKYA 159
R L+++
Sbjct: 136 DLRENLERWG 145
>gi|386758297|ref|YP_006231513.1| protein RsmB [Bacillus sp. JS]
gi|384931579|gb|AFI28257.1| RsmB [Bacillus sp. JS]
Length = 447
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++ G++ D +S AL+ + VLD CAAPG K I +++ + GSVT
Sbjct: 222 IAGTHFFQNGEVSIQDESSMLVARALDPKPDETVLDACAAPGGKSAHIAELMKNKGSVTS 281
Query: 141 VDVARHRL 148
+D+ +H++
Sbjct: 282 LDLHKHKV 289
>gi|383860508|ref|XP_003705731.1| PREDICTED: putative methyltransferase NSUN5-like [Megachile
rotundata]
Length = 563
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 63 LEKVVWLSGF-----YSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDL 117
LEK ++ F + P Y+ G+I D AS A L+ G VLD+
Sbjct: 178 LEKPNFIQDFHIPELFVFPKGTNFQDDRRYEAGEILIQDKASCLAAKILDPKPGSVVLDM 237
Query: 118 CAAPGAKLCMILDIIGDSGSVTGV--DVARHRL---------AACRTLLQKYALGDRCRL 166
CAAPG K + ++ ++G++ V DV+R+ A C +QK AL
Sbjct: 238 CAAPGMKTSHLAALMNNTGTIYAVEFDVSRYAFLCKQVKATGATCVKTIQKDALK----- 292
Query: 167 FVADGTTFSLAPLRLLLDPGSCN 189
DG F +L+DP SC+
Sbjct: 293 --LDGNNFKDVEY-ILVDP-SCS 311
>gi|228992593|ref|ZP_04152520.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
pseudomycoides DSM 12442]
gi|228998641|ref|ZP_04158228.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock3-17]
gi|228761109|gb|EEM10068.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock3-17]
gi|228767227|gb|EEM15863.1| Ribosomal RNA small subunit methyltransferase B [Bacillus
pseudomycoides DSM 12442]
Length = 415
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + A+K G + D +S AL GD VLD CAAPG K I + + +G VT
Sbjct: 190 VAHTEAFKNGFLSIQDESSMLVARALKPEEGDMVLDSCAAPGGKTTHIAERLKGTGQVTS 249
Query: 141 VDVARHRL 148
+D+ H++
Sbjct: 250 LDLHPHKV 257
>gi|425244944|ref|ZP_18638245.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MA6]
gi|408158135|gb|EKH86263.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
MA6]
Length = 429
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + ADG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQADGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>gi|423389828|ref|ZP_17367054.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1X1-3]
gi|423418228|ref|ZP_17395317.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3X2-1]
gi|401106501|gb|EJQ14462.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG3X2-1]
gi|401641919|gb|EJS59636.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
BAG1X1-3]
Length = 444
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + A+K+G + D +S AL + GD VLD CAAPG K I + + +G V
Sbjct: 219 VAHTEAFKKGFLSIQDESSMLVARALEPNEGDEVLDSCAAPGGKTTHIAERLKGTGKVMS 278
Query: 141 VDVARHRLAACRTLLQKYAL 160
+D+ H++ R + L
Sbjct: 279 LDLHAHKVRLIRQQADRLGL 298
>gi|384181679|ref|YP_005567441.1| 16S rRNA methyltransferase B [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|324327763|gb|ADY23023.1| 16S rRNA methyltransferase B [Bacillus thuringiensis serovar
finitimus YBT-020]
Length = 444
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + A+K+G + D +S AL GD VLD CAAPG K I + + +G V
Sbjct: 219 VAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMS 278
Query: 141 VDVARHRLAACRTLLQKYALGD 162
+D+ H++ + ++ LG+
Sbjct: 279 LDLHAHKVRLIKQQAERLGLGN 300
>gi|448311762|ref|ZP_21501516.1| RNA methylase, NOL1/NOP2/sun family protein [Natronolimnobius
innermongolicus JCM 12255]
gi|445603793|gb|ELY57750.1| RNA methylase, NOL1/NOP2/sun family protein [Natronolimnobius
innermongolicus JCM 12255]
Length = 302
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 74/194 (38%), Gaps = 41/194 (21%)
Query: 16 EAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSL 75
E L L+E+GL+ Y AD PR +RL+T + W S F+
Sbjct: 39 ERALATLEEDGLE---YEQADWNPRVLRLETDSPGS---------------TW-SSFH-- 77
Query: 76 PPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDS 135
G +G + S L+ +G+ V D CAAPG K I ++ D
Sbjct: 78 --------------GFTHGQEEVSAVPPIVLDPQSGERVWDCCAAPGGKATQIAALMDDE 123
Query: 136 GSVTGVDVARHRLAACRTLLQKYA------LGDRCRLFVADGTTFSLAPLRLLLDPGSCN 189
G+V D R++A R ++ D R + + +F L+ P SC
Sbjct: 124 GTVVANDNNLGRISALRFNAERLGATSLAVTNDDARNYSLNRFSFDEFDRALVDAPCSCE 183
Query: 190 SVLQEKDDTFREWT 203
+++ D W+
Sbjct: 184 GTIRKNPDALDNWS 197
>gi|423080442|ref|ZP_17069063.1| NOL1/NOP2/sun family protein [Clostridium difficile 002-P50-2011]
gi|423086602|ref|ZP_17075001.1| NOL1/NOP2/sun family protein [Clostridium difficile 050-P50-2011]
gi|357546448|gb|EHJ28372.1| NOL1/NOP2/sun family protein [Clostridium difficile 050-P50-2011]
gi|357553069|gb|EHJ34829.1| NOL1/NOP2/sun family protein [Clostridium difficile 002-P50-2011]
Length = 436
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 90/199 (45%), Gaps = 11/199 (5%)
Query: 14 LPEAFLDFLKE---NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLS 70
LP+ FL+ ++E + D + S +S +R+ T + EL L ++ W
Sbjct: 4 LPKKFLEDIEEILKDEYDDFIKSYEESKTTGLRINTLKIDKKRLFDLEL-FDLNQIPWAE 62
Query: 71 -GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
GFY + + ++ G Y + ++ + + +I G+ +LD+CAAPG K IL
Sbjct: 63 EGFYYDDKIDRPGRNPLHEAGAYYLQEPSAMSVIPKADIKEGEKILDMCAAPGGKSTYIL 122
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT----TFSLAPLRLLLD- 184
+ D+G + ++ R+ A L+++ C + D TF+ ++++D
Sbjct: 123 SKLNDTGLLVSNEINASRIKALGENLERFG-ARNCIITNTDSNSLRKTFNGYFNKVIIDA 181
Query: 185 PGSCNSVLQEKDDTFREWT 203
P S + ++ + +W+
Sbjct: 182 PCSGQGMFRKDEVAISDWS 200
>gi|229006142|ref|ZP_04163829.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock1-4]
gi|228755095|gb|EEM04453.1| Ribosomal RNA small subunit methyltransferase B [Bacillus mycoides
Rock1-4]
Length = 415
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + A+K G + D +S AL GD VLD CAAPG K I + + +G VT
Sbjct: 190 VAHTEAFKNGFLSIQDESSMLVARALKPEEGDMVLDSCAAPGGKTTHIAERLKGTGQVTS 249
Query: 141 VDVARHRL 148
+D+ H++
Sbjct: 250 LDLHPHKV 257
>gi|42782957|ref|NP_980204.1| sun protein [Bacillus cereus ATCC 10987]
gi|42738884|gb|AAS42812.1| sun protein [Bacillus cereus ATCC 10987]
Length = 444
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + A+K+G + D +S AL GD VLD CAAPG K I + + +G V
Sbjct: 219 VAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMS 278
Query: 141 VDVARHRLAACRTLLQKYALGD 162
+D+ H++ + ++ LG+
Sbjct: 279 LDLHAHKVRLIKQQAERLGLGN 300
>gi|402556013|ref|YP_006597284.1| 16S rRNA methyltransferase B [Bacillus cereus FRI-35]
gi|401797223|gb|AFQ11082.1| 16S rRNA methyltransferase B [Bacillus cereus FRI-35]
Length = 444
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + A+K+G + D +S AL GD VLD CAAPG K I + + +G V
Sbjct: 219 VAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMS 278
Query: 141 VDVARHRLAACRTLLQKYALGD 162
+D+ H++ + ++ LG+
Sbjct: 279 LDLHAHKVRLIKQQAERLGLGN 300
>gi|423574529|ref|ZP_17550648.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-D12]
gi|423604508|ref|ZP_17580401.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD102]
gi|401212054|gb|EJR18800.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-D12]
gi|401245128|gb|EJR51486.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
VD102]
Length = 444
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + A+K+G + D +S AL GD VLD CAAPG K I + + +G V
Sbjct: 219 VAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMS 278
Query: 141 VDVARHRLAACRTLLQKYALGD 162
+D+ H++ + ++ LG+
Sbjct: 279 LDLHAHKVRLIKQQAERLGLGN 300
>gi|331083252|ref|ZP_08332365.1| hypothetical protein HMPREF0992_01289 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330404333|gb|EGG83878.1| hypothetical protein HMPREF0992_01289 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 459
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 12/203 (5%)
Query: 14 LPEAFLDFLKEN-GLDPSVYSAADSTPRYIRLKTG-NEADLEEIEAELKCKLEKVVWLSG 71
LPE FL ++ G + + + PR L+ N+ +EE LE + W+
Sbjct: 4 LPEKFLSRMEAMLGKEFPAFLQSYDFPRKFGLRVNTNKISVEEFLEISPFHLEPIPWIDN 63
Query: 72 FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDI 131
+ + + + Y G Y + ++ + +++ G++VLDLCAAPG K +
Sbjct: 64 GFFYDENDRPSRHPYYFAGLYYLQEPSAMTPANRFSVNPGEYVLDLCAAPGGKATELGAK 123
Query: 132 IGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL------RLLLD- 184
+ +G + D++ R A L+ + + + V + T LA ++L+D
Sbjct: 124 LQGNGFLVANDISNSRAKALLRNLELFGIKNSM---VTNETPAKLAKYFPEFFDKILVDA 180
Query: 185 PGSCNSVLQEKDDTFREWTSRIP 207
P S + ++ D + W P
Sbjct: 181 PCSGEGMFRKDPDVAKTWDETRP 203
>gi|295109189|emb|CBL23142.1| ribosomal RNA small subunit methyltransferase RsmB [Ruminococcus
obeum A2-162]
Length = 450
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
A+ QGKI D +S N S GD+V+D+CAAPG K + D + G+V D+++
Sbjct: 233 AFIQGKILVQDVSSMLVAEIANPSRGDYVIDMCAAPGGKSLHMGDKMEGFGTVDARDISQ 292
Query: 146 HRLAACRTLLQK 157
+++ +Q+
Sbjct: 293 YKVNLIEENIQR 304
>gi|254435259|ref|ZP_05048766.1| ribosomal RNA small subunit methyltransferase B [Nitrosococcus
oceani AFC27]
gi|207088370|gb|EDZ65642.1| ribosomal RNA small subunit methyltransferase B [Nitrosococcus
oceani AFC27]
Length = 435
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 19/197 (9%)
Query: 15 PEAFLDFLKENGLD--PSVYSAADSTP----RYIRLKTGNEADLEEIEAELKCKLEKVVW 68
P+ LD ++ + D P + +A +S P R RL+ + L+E++ K +
Sbjct: 147 PQWLLDAIRNSWPDHWPQIITANNSHPPLSLRINRLQNNRKNYLQELKRN-DIKAWPIPH 205
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
L ++AT + +G++ D A A L ++ G VLD CAAPG K I
Sbjct: 206 TESGVILEQPCQVATLPGFLKGQVSVQDGAGQRAAPLLALTPGQRVLDACAAPGGKTSHI 265
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA-------DGTTFSLAPLRL 181
L++ ++ +D+ RL + L++ L A DG F R+
Sbjct: 266 LELEPQLETLIALDLDATRLERLNSNLKRLQLKAEVIQGNALQPDTWWDGIPFD----RI 321
Query: 182 LLD-PGSCNSVLQEKDD 197
LLD P S + V++ D
Sbjct: 322 LLDAPCSGSGVIRRHPD 338
>gi|138894694|ref|YP_001125147.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus
thermodenitrificans NG80-2]
gi|196247686|ref|ZP_03146388.1| sun protein [Geobacillus sp. G11MC16]
gi|134266207|gb|ABO66402.1| 16S rRNA m(5)C 967 methyltransferase [Geobacillus
thermodenitrificans NG80-2]
gi|196212470|gb|EDY07227.1| sun protein [Geobacillus sp. G11MC16]
Length = 444
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 13/139 (9%)
Query: 37 STPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIK-----IATSMAYKQGK 91
ST R R++ E LE + +E V + G + P I+ A + A+ G
Sbjct: 177 STARVNRMRATVEEALERLGSE------GVKAVRGLLA-PEAIRAENGNFAHTEAFHSGW 229
Query: 92 IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAAC 151
+ D +S AL+ +AG+ VLD CAAPG K I + + G V VD+ H++
Sbjct: 230 LTIQDESSMLVARALDPAAGERVLDCCAAPGGKTTHIAERMDGRGEVVAVDIHEHKVKLI 289
Query: 152 RTLLQKYALGDRCRLFVAD 170
Q+ L D R D
Sbjct: 290 EQQAQRLGL-DNIRTLALD 307
>gi|28867419|ref|NP_790038.1| sun protein [Pseudomonas syringae pv. tomato str. DC3000]
gi|46396868|sp|Q88B41.1|RSMB_PSESM RecName: Full=Ribosomal RNA small subunit methyltransferase B;
AltName: Full=16S rRNA m5C967 methyltransferase;
AltName: Full=rRNA (cytosine-C(5)-)-methyltransferase
RsmB
gi|28850653|gb|AAO53733.1| sun protein [Pseudomonas syringae pv. tomato str. DC3000]
Length = 448
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L ++ G VLD C APG K C +L++ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVA---------DGTTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL R L++ LG L A DG F R+LLD P S V++
Sbjct: 280 RLVRVRENLER--LGLDAELIAADARETAQWWDGKPFQ----RILLDAPCSATGVIRRHP 333
Query: 197 D 197
D
Sbjct: 334 D 334
>gi|229019063|ref|ZP_04175901.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1273]
gi|228742231|gb|EEL92393.1| Ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AH1273]
Length = 369
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + A+K+G + D +S AL + GD VLD CAAPG K I + + +G V
Sbjct: 144 VAHTEAFKKGFLSIQDESSMLVARALEPNEGDEVLDSCAAPGGKTTHIAERLKGTGKVMS 203
Query: 141 VDVARHRLAACRTLLQKYAL 160
+D+ H++ R + L
Sbjct: 204 LDLHAHKVRLIRQQADRLGL 223
>gi|206976730|ref|ZP_03237634.1| sun protein [Bacillus cereus H3081.97]
gi|206745040|gb|EDZ56443.1| sun protein [Bacillus cereus H3081.97]
Length = 444
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + A+K+G + D +S AL GD VLD CAAPG K I + + +G V
Sbjct: 219 VAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMS 278
Query: 141 VDVARHRLAACRTLLQKYALGD 162
+D+ H++ + ++ LG+
Sbjct: 279 LDLHAHKVRLIKQQAERLGLGN 300
>gi|222622433|gb|EEE56565.1| hypothetical protein OsJ_05902 [Oryza sativa Japonica Group]
Length = 505
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 11/159 (6%)
Query: 39 PRYIR---LKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGI 95
PR++R L+T ++ +EE+ K +++V LPP + +GK++
Sbjct: 175 PRFLRVNTLRTSTDSVIEELNKIHKVDKDELV--PDLLVLPPGTDLHNHHLVSEGKVFLQ 232
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
AS AL G V+D CAAPG K + ++ GS+T ++ + R + +
Sbjct: 233 GKASCMVAVALCPEPGWKVIDACAAPGNKTVHLAALMNGEGSITACELNKERTKTLQNTI 292
Query: 156 QKYALGD----RCRLFVADGTTFSLAPLR-LLLDPGSCN 189
++ + D S A +R +LLDP SC+
Sbjct: 293 RRSGANNIETINGDFLDIDSNDPSYAEVRAILLDP-SCS 330
>gi|77166463|ref|YP_344988.1| rRNA SAM-dependent methyltransferase [Nitrosococcus oceani ATCC
19707]
gi|76884777|gb|ABA59458.1| 16S rRNA m(5)C-967 methyltransferase [Nitrosococcus oceani ATCC
19707]
Length = 403
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 19/197 (9%)
Query: 15 PEAFLDFLKENGLD--PSVYSAADSTP----RYIRLKTGNEADLEEIEAELKCKLEKVVW 68
P+ LD ++ + D P + +A +S P R RL+ + L+E++ K +
Sbjct: 115 PQWLLDAIRNSWPDHWPQIITANNSHPPLSLRINRLQNNRKNYLQELKRN-DIKAWPIPH 173
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
L ++AT + +G++ D A A L ++ G VLD CAAPG K I
Sbjct: 174 TESGVILEQPCQVATLPGFLKGQVSVQDGAGQRAAPLLALTPGQRVLDACAAPGGKTSHI 233
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA-------DGTTFSLAPLRL 181
L++ ++ +D+ RL + L++ L A DG F R+
Sbjct: 234 LELEPQLETLIALDLDATRLERLNSNLKRLQLKAEVIQGNALQPDTWWDGIPFD----RI 289
Query: 182 LLD-PGSCNSVLQEKDD 197
LLD P S + V++ D
Sbjct: 290 LLDAPCSGSGVIRRHPD 306
>gi|294675830|ref|YP_003576445.1| ribosomal RNA small subunit methyltransferase B [Rhodobacter
capsulatus SB 1003]
gi|294474650|gb|ADE84038.1| ribosomal RNA small subunit methyltransferase B-1 [Rhodobacter
capsulatus SB 1003]
Length = 421
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 6/106 (5%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y G + DAA+ LN G+HVLDLCAAPG K L ++ VT +DV+
Sbjct: 207 YATGDWWVQDAAAALPARVLNAQPGEHVLDLCAAPGGK---TLQLLAAGARVTALDVSAP 263
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFS-LAPLRLLLDPGSCNSV 191
RL L + G R VAD ++ AP +L C++
Sbjct: 264 RLDRLEENLARC--GMRAETVVADALDWTPAAPFDAILLDAPCSAT 307
>gi|381183025|ref|ZP_09891794.1| 16S rRNA methyltransferase B [Listeriaceae bacterium TTU M1-001]
gi|380317083|gb|EIA20433.1| 16S rRNA methyltransferase B [Listeriaceae bacterium TTU M1-001]
Length = 441
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + A+K GK D +S AL + VLD CAAPG K +I + + +GSV
Sbjct: 219 IANTNAFKTGKCTIQDESSMVVAYALELKDDLDVLDACAAPGGKTTLIAEKMNGTGSVMA 278
Query: 141 VDVARHR 147
+D+ H+
Sbjct: 279 LDIHAHK 285
>gi|430749697|ref|YP_007212605.1| tRNA/rRNA cytosine-C5-methylase [Thermobacillus composti KWC4]
gi|430733662|gb|AGA57607.1| tRNA/rRNA cytosine-C5-methylase [Thermobacillus composti KWC4]
Length = 521
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Query: 44 LKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAV 103
LKT E+ + + L L+ V W Y + + Y G Y + ++ A
Sbjct: 41 LKTDGES--YRMRSPLSAGLKPVPWAEAGYYYSEEDRPGKHPHYHAGLYYIQEPSAMAPA 98
Query: 104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAA 150
LN+ G VLDLCAAPG K I + G + D AR R A
Sbjct: 99 ELLNVQPGHRVLDLCAAPGGKSSQIAAKLKGHGLLVANDNARERTKA 145
>gi|440719868|ref|ZP_20900291.1| 16S rRNA methyltransferase B [Pseudomonas syringae BRIP34876]
gi|440728127|ref|ZP_20908346.1| 16S rRNA methyltransferase B [Pseudomonas syringae BRIP34881]
gi|440362234|gb|ELP99434.1| 16S rRNA methyltransferase B [Pseudomonas syringae BRIP34881]
gi|440367108|gb|ELQ04177.1| 16S rRNA methyltransferase B [Pseudomonas syringae BRIP34876]
Length = 441
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 57/132 (43%), Gaps = 18/132 (13%)
Query: 76 PPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDS 135
P D+++ A +G I D A+ A L ++ G VLD C APG K C +L++
Sbjct: 211 PCDVRLLPGFA--EGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQL 268
Query: 136 GSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA---------DGTTFSLAPLRLLLD-P 185
V VD+ RL R L + LG L A DG F R+LLD P
Sbjct: 269 NGVVAVDLEAKRLVRVRENLDR--LGLDAELIAADARETAQWWDGKPFQ----RILLDAP 322
Query: 186 GSCNSVLQEKDD 197
S V++ D
Sbjct: 323 CSATGVIRRHPD 334
>gi|109004030|ref|XP_001108301.1| PREDICTED: putative methyltransferase NSUN4-like isoform 4 [Macaca
mulatta]
Length = 384
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
Y +DAAS V AL + GD VLDLCAAPG K +L G ++ D++ R+A +
Sbjct: 156 YLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQ-TGCCRNLAANDLSTSRIARLQ 214
Query: 153 TLLQKYAL-----GDRCRLFVADG 171
+L Y G+R R+ DG
Sbjct: 215 NILHSYVPQEIRDGNRVRVTSWDG 238
>gi|385799660|ref|YP_005836064.1| sun protein [Halanaerobium praevalens DSM 2228]
gi|309389024|gb|ADO76904.1| sun protein [Halanaerobium praevalens DSM 2228]
Length = 449
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 68 WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
+L FY L A + +K+G Y ++G A L+ S VLDL AAPG K
Sbjct: 211 FLESFYKLKKVNNPAQTKVFKRGGAYIQGTSAGLASLLLDPSENMEVLDLAAAPGGKTSH 270
Query: 128 ILDIIGDSGSVTGVDVARHRL 148
+ ++ ++G + +D+++ RL
Sbjct: 271 LAALMNNTGQIKALDISQSRL 291
>gi|217961285|ref|YP_002339853.1| sun protein [Bacillus cereus AH187]
gi|222097310|ref|YP_002531367.1| sun protein [Bacillus cereus Q1]
gi|375285788|ref|YP_005106227.1| sun protein [Bacillus cereus NC7401]
gi|423353567|ref|ZP_17331194.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
IS075]
gi|423374338|ref|ZP_17351676.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AND1407]
gi|423567240|ref|ZP_17543487.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-A12]
gi|217064955|gb|ACJ79205.1| sun protein [Bacillus cereus AH187]
gi|221241368|gb|ACM14078.1| sun protein [Bacillus cereus Q1]
gi|358354315|dbj|BAL19487.1| sun protein [Bacillus cereus NC7401]
gi|401089380|gb|EJP97551.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
IS075]
gi|401094250|gb|EJQ02332.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
AND1407]
gi|401214328|gb|EJR21058.1| ribosomal RNA small subunit methyltransferase B [Bacillus cereus
MSX-A12]
Length = 444
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + A+K+G + D +S AL GD VLD CAAPG K I + + +G V
Sbjct: 219 VAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMS 278
Query: 141 VDVARHRLAACRTLLQKYALGD 162
+D+ H++ + ++ LG+
Sbjct: 279 LDLHAHKVRLIKQQAERLGLGN 300
>gi|307708280|ref|ZP_07644747.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis NCTC 12261]
gi|307615726|gb|EFN94932.1| ribosomal RNA small subunit methyltransferase B [Streptococcus
mitis NCTC 12261]
Length = 437
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D +S L++ G+ VLD CAAPG K I + +G VT +D+ H
Sbjct: 222 FSEGAITIQDESSQLVAPTLDLQGGEQVLDACAAPGGKTAHIASYL-TTGQVTALDLYDH 280
Query: 147 RLAACRTLLQKYALGDRCRL 166
+L + Q+ + DR ++
Sbjct: 281 KLDLIQENAQRLGVADRVQM 300
>gi|170769473|ref|ZP_02903926.1| ribosomal RNA small subunit methyltransferase B [Escherichia
albertii TW07627]
gi|170121530|gb|EDS90461.1| ribosomal RNA small subunit methyltransferase B [Escherichia
albertii TW07627]
Length = 429
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 23/163 (14%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+ +G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFDEGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVMAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG + S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRSPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSG 242
I W R R + A A ++SE + I+ +SG
Sbjct: 337 ------IKWLRRDRDI------AELAQLQSEILDAIWPHLKSG 367
>gi|288941789|ref|YP_003444029.1| sun protein [Allochromatium vinosum DSM 180]
gi|288897161|gb|ADC62997.1| sun protein [Allochromatium vinosum DSM 180]
Length = 449
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ D+ + A L+ G+ VLD CAAPG K IL+ G++ + +D
Sbjct: 236 FIEGRVSVQDSGAQLAARLLDAQPGERVLDACAAPGGKTAAILERAGNALDLVAIDSDAA 295
Query: 147 RLAACRTLLQKYALGDRCRLFVADGT----TFSLAPL-RLLLD-PGSCNSVLQEKDDTFR 200
RLA T L + LG + ++ V D ++ P R+LLD P S V++ D
Sbjct: 296 RLATVGTTLDR--LGLKAQVRVGDAADPHGDWTARPFDRILLDVPCSATGVIRRHPDI-- 351
Query: 201 EWTSR 205
+W R
Sbjct: 352 KWLRR 356
>gi|229197976|ref|ZP_04324690.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293]
gi|228585455|gb|EEK43559.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus m1293]
Length = 360
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + A+K+G + D +S AL GD VLD CAAPG K I + + +G V
Sbjct: 135 VAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMS 194
Query: 141 VDVARHRLAACRTLLQKYALGD 162
+D+ H++ + ++ LG+
Sbjct: 195 LDLHAHKVRLIKQQAERLGLGN 216
>gi|423116640|ref|ZP_17104331.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5245]
gi|376377608|gb|EHS90376.1| ribosomal RNA small subunit methyltransferase B [Klebsiella oxytoca
10-5245]
Length = 429
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 25/162 (15%)
Query: 69 LSGF-YSLPPD-IKIATSM------AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
+SGF +S PD +++ T + +++G + DA++ V+ L G+H+LDLCAA
Sbjct: 197 MSGFTHSAYPDAVRMETPVPVHALPGFEEGWVTVQDASAQGCVTFLAPKNGEHILDLCAA 256
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS----- 175
PG K IL+ ++ V +D+ RL+ L++ LG + + DG S
Sbjct: 257 PGGKTTHILEAAPEA-QVLAIDIDEQRLSRVYDNLKR--LGMKATVKQGDGRHPSQWCGE 313
Query: 176 LAPLRLLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVK 216
R+LLD P S + V++ D I W R R ++
Sbjct: 314 QQFDRILLDAPCSASGVIRRHPD--------IKWLRRDRDIE 347
>gi|414160518|ref|ZP_11416784.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
simulans ACS-120-V-Sch1]
gi|410878038|gb|EKS25927.1| ribosomal RNA small subunit methyltransferase B [Staphylococcus
simulans ACS-120-V-Sch1]
Length = 434
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 3/117 (2%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S A+K G + D +S L G+++LD C+APG K C +++ SG V
Sbjct: 218 VVESRAFKDGYVSIQDKSSMFVAEILAPVEGENILDACSAPGGKACQTAELLKGSGHVDA 277
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTT-FSLAPLRLLLD-PGSCNSVLQEK 195
D+ H++ ++K L + F D T + ++L+D P S VL+ K
Sbjct: 278 TDIHEHKIDLIEHNIRKLRLKN-VTAFQHDATKPYDAKYDKILVDAPCSGLGVLRHK 333
>gi|378754789|gb|EHY64818.1| hypothetical protein NERG_02221 [Nematocida sp. 1 ERTm2]
Length = 368
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 22/133 (16%)
Query: 33 SAADSTPRYIRLKT--GNEADLEEIEAELKC------KLEKVVWLSGFYSLPPDIKIATS 84
+ D+TP+YIR+ T E + + E+ C LE+V W +
Sbjct: 108 TPKDTTPQYIRINTLKATETVISSLSTEVTCIPHVYKSLERVNW-------------SKL 154
Query: 85 MAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVA 144
++++QG + D +S LN + VLD CAAPG K L +I S +V ++
Sbjct: 155 VSFQQGLFFIQDLSSCMPAYVLNPPSNTVVLDACAAPGNKTTH-LAMISPSSTVYAIEKD 213
Query: 145 RHRLAACRTLLQK 157
R R +++K
Sbjct: 214 IDRYTTLREMVEK 226
>gi|365134343|ref|ZP_09343222.1| ribosomal RNA small subunit methyltransferase B [Subdoligranulum
sp. 4_3_54A2FAA]
gi|363614304|gb|EHL65801.1| ribosomal RNA small subunit methyltransferase B [Subdoligranulum
sp. 4_3_54A2FAA]
Length = 435
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+KQG + AS A +AL+ GD VLDLCAAPG K + + + G++ D A++
Sbjct: 224 FKQGLFHVQGEASQLACAALSPRPGDTVLDLCAAPGGKSATLAQYMENKGTLVSCDAAQN 283
Query: 147 RLAACRTLLQKYALGDRC-RLFVADGTTFSLA 177
RL L++ LG C R+ D ++ A
Sbjct: 284 RLTLVGGALER--LGVACGRVLHNDAAVYNEA 313
>gi|315651135|ref|ZP_07904167.1| rRNA (cytosine-5-)-methyltransferase [Lachnoanaerobaculum saburreum
DSM 3986]
gi|315486600|gb|EFU76950.1| rRNA (cytosine-5-)-methyltransferase [Lachnoanaerobaculum saburreum
DSM 3986]
Length = 444
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 67/149 (44%), Gaps = 17/149 (11%)
Query: 11 KLPLPEAFLDFLKENG---LDPSVYSAADSTPRYIRLKTGNEA------DLEE--IEAEL 59
+ +PE LD +KEN D ++ + P IR+ T +LEE I AE
Sbjct: 141 RYSMPEFLLDIIKENTGKYFDKTLEYFLEGRPVSIRVNTSKSKVTDVVKELEESNIRAER 200
Query: 60 KCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCA 119
+ V+++ GF + DI + K GK Y D +S + VLD+CA
Sbjct: 201 SSLNDAVLYIRGFDKVD-DISVI-----KSGKCYITDVSSSMIAELIIPDNIKKVLDVCA 254
Query: 120 APGAKLCMILDIIGDSGSVTGVDVARHRL 148
APG K ++ D I + + D++ +++
Sbjct: 255 APGGKSFLLADKIDNEALIYSCDISENKV 283
>gi|238754203|ref|ZP_04615561.1| Ribosomal RNA small subunit methyltransferase B [Yersinia ruckeri
ATCC 29473]
gi|238707699|gb|EEQ00059.1| Ribosomal RNA small subunit methyltransferase B [Yersinia ruckeri
ATCC 29473]
Length = 429
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+ QG + DA++ V L+ G+ +LDLCAAPG K IL+ S V VD+
Sbjct: 222 GFTQGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILEAAPKS-HVLAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFSLAP---------LRLLLD-PGSCNSVLQEK 195
RL+ + LQ+ L + V DG AP R+LLD P S V++
Sbjct: 281 QRLSRVKENLQRLQL--HATVTVGDGR----APDKWCGNQLFDRILLDAPCSATGVIRRH 334
Query: 196 DDTFREWTSR 205
D +W R
Sbjct: 335 PDI--KWLRR 342
>gi|348553437|ref|XP_003462533.1| PREDICTED: putative methyltransferase NSUN4 [Cavia porcellus]
Length = 381
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
Y +DAAS V AL + GD VLDLCAAPG K +L + G++ D++ R +
Sbjct: 153 YLMDAASLLPVLALGLHPGDTVLDLCAAPGGKTLALLQTLC-CGNLAANDLSTSRTGRLQ 211
Query: 153 TLLQKYALGD 162
+LQ Y D
Sbjct: 212 KVLQSYVPQD 221
>gi|418027741|ref|ZP_12666353.1| Methyltransferase [Streptococcus thermophilus CNCM I-1630]
gi|354689899|gb|EHE89869.1| Methyltransferase [Streptococcus thermophilus CNCM I-1630]
Length = 440
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+K+G + D S L I + +LD CAAPG K + + SG VT +D+ H
Sbjct: 226 FKEGLLTIQDETSQLVAPTLAIQGMEEILDACAAPGGKTVHMASYL-TSGHVTALDLYDH 284
Query: 147 RLAACRTLLQKYALGDRCRLFVADG----TTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
+LA + Q+ L D+ + D F A ++L+D PGS +++ K D
Sbjct: 285 KLALIKENAQRLGLADKVKTQKLDARQVHQVFPTASFDKILVDAPGSGIGLIRRKPD 341
>gi|386394497|ref|ZP_10079278.1| tRNA/rRNA cytosine-C5-methylase [Desulfovibrio sp. U5L]
gi|385735375|gb|EIG55573.1| tRNA/rRNA cytosine-C5-methylase [Desulfovibrio sp. U5L]
Length = 427
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 15/133 (11%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ S+A + G I+ D +S L+ AG VLD+CAAPG K + ++G +G V G
Sbjct: 62 LGASLAARFGYIHIQDRSSMLPPLLLDPPAGARVLDMCAAPGGKTGFLAQLVGPTGFVLG 121
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP-------LRLLLDPGSCN--SV 191
+ + RLA R L + +L + AD L+P +LLDP C+
Sbjct: 122 NEPSPDRLATLRQTLFRESLANAATCSQAD-----LSPHLPEGAFTHILLDP-PCSGWGT 175
Query: 192 LQEKDDTFREWTS 204
L + R W+
Sbjct: 176 LDKNPQAARIWSG 188
>gi|300361826|ref|ZP_07058003.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri JV-V03]
gi|300354445|gb|EFJ70316.1| NOL1/NOP2/sun family protein [Lactobacillus gasseri JV-V03]
Length = 463
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ G +Y D ++ ALN+ G+ VLDLCAAPG K + + + G + ++++
Sbjct: 73 WTSGYVYSQDPSAMYPAVALNVKPGEKVLDLCAAPGGKSTALASFLENKGLLVANEISKS 132
Query: 147 RLAACRTLLQKYA 159
R R L+++
Sbjct: 133 RAKDLRENLERWG 145
>gi|436841225|ref|YP_007325603.1| Fmu (Sun) domain protein [Desulfovibrio hydrothermalis AM13 = DSM
14728]
gi|432170131|emb|CCO23502.1| Fmu (Sun) domain protein [Desulfovibrio hydrothermalis AM13 = DSM
14728]
Length = 418
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 79 IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSV 138
+ S+A K G+IY D +S L+ G VLD+CAAPG+K ++ ++G G V
Sbjct: 48 FPLGESIAAKFGRIYIQDRSSMLPPLLLSPEKGAIVLDMCAAPGSKTGLLSRLVGRDGFV 107
Query: 139 TGVDVARHRLAACRTLLQK 157
+ + RLA R L+K
Sbjct: 108 LASEPSGDRLALLRQNLRK 126
>gi|422818448|ref|ZP_16866660.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M919]
gi|385537854|gb|EIF84721.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
M919]
Length = 429
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEK 195
RL+ L++ LG + L DG F R+LLD P S V++
Sbjct: 281 QRLSRVYDNLKR--LGMKATLKQGDGRYPSQWCGEQQFD----RILLDAPCSATGVIRRH 334
Query: 196 DDTFREWTSRIPWKERKRAV 215
D I W R R +
Sbjct: 335 PD--------IKWLRRDRDI 346
>gi|256851169|ref|ZP_05556558.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260660593|ref|ZP_05861508.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii
115-3-CHN]
gi|256616231|gb|EEU21419.1| conserved hypothetical protein [Lactobacillus jensenii 27-2-CHN]
gi|260548315|gb|EEX24290.1| tRNA and rRNA cytosine-C5-methylase [Lactobacillus jensenii
115-3-CHN]
Length = 461
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 89/203 (43%), Gaps = 14/203 (6%)
Query: 9 ISKLPLPEAFLDFLKE--NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKV 66
+ KL LP+ F D ++ S ++A ++ P+ +AD +E+ +L ++ V
Sbjct: 1 MDKLVLPKEFKDKYQKLLAKKADSFFTALEAEPKKAFRLNPLKADYQEVSYDLSKPVDGV 60
Query: 67 VWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLC 126
+Y +I + + G +Y D ++ AL + G VLDLCAAPG K
Sbjct: 61 A--DAYYG---EIS-GRDIEWVSGYVYSQDPSAMYPAEALGVKPGQKVLDLCAAPGGKST 114
Query: 127 MILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR----LL 182
+L + + G + +++ R R ++++ D C + D + + R +L
Sbjct: 115 ALLSALKNKGLLVANEISTSRAKNLRENIERWG-ADNCLVTNEDTSHLAQKFPRFFDAIL 173
Query: 183 LD-PGSCNSVLQEKDDTFREWTS 204
+D P S + ++ D W+
Sbjct: 174 VDAPCSGEGMFRKNHDAVTYWSQ 196
>gi|148262276|ref|YP_001228982.1| sun protein [Geobacter uraniireducens Rf4]
gi|146395776|gb|ABQ24409.1| sun protein [Geobacter uraniireducens Rf4]
Length = 448
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 33 SAADSTPRYIR---LKTGNEADLEEIEAE-LKCKLEKVVWLSGFYSLPPDIKIATSMA-- 86
+ A+ P IR LKT E +E + +E ++C+ + F L I A S+A
Sbjct: 175 AMAEPPPLTIRTNTLKTSREELMERLASEGVQCEATR------FSPLGVRIITAGSVARL 228
Query: 87 --YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVA 144
++ G D +S AV L+ G+ VLD CAAPG K + ++G+SG + DV
Sbjct: 229 QSFRDGLFTVQDESSQLAVMFLSPEPGEKVLDACAAPGGKATHMAQLMGNSGEIIACDVI 288
Query: 145 RHRL 148
+L
Sbjct: 289 GRKL 292
>gi|260589041|ref|ZP_05854954.1| NOL1/NOP2/sun family protein [Blautia hansenii DSM 20583]
gi|260540820|gb|EEX21389.1| NOL1/NOP2/sun family protein [Blautia hansenii DSM 20583]
Length = 459
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 86/203 (42%), Gaps = 12/203 (5%)
Query: 14 LPEAFLDFLKEN-GLDPSVYSAADSTPRYIRLKTG-NEADLEEIEAELKCKLEKVVWLSG 71
LPE FL ++ G + + + PR L+ N+ +EE LE + W+
Sbjct: 4 LPEKFLSRMEAMLGEEFPAFLQSYDFPRKFGLRVNTNKISVEEFLKISPFHLEPIPWIDN 63
Query: 72 FYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDI 131
+ + + + Y G Y + ++ + +++ G++VLDLCAAPG K +
Sbjct: 64 GFFYDENDRPSRHPYYFAGLYYLQEPSAMTPANRFSVNPGEYVLDLCAAPGGKATELGAK 123
Query: 132 IGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL------RLLLD- 184
+ +G + D++ R A L+ + + + V + T LA ++L+D
Sbjct: 124 LQGNGFLVANDISNSRAKALLRNLELFGIKNSM---VTNETPAKLAKYFPEFFDKILVDA 180
Query: 185 PGSCNSVLQEKDDTFREWTSRIP 207
P S + ++ D + W P
Sbjct: 181 PCSGEGMFRKDPDVAKTWDETRP 203
>gi|375083393|ref|ZP_09730416.1| nucleolar protein I [Thermococcus litoralis DSM 5473]
gi|374741903|gb|EHR78318.1| nucleolar protein I [Thermococcus litoralis DSM 5473]
Length = 304
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 42 IRLKTGNEADLEEIEAEL--KCKLEKVVWLS-GFYSLPPDIKIATSMAYKQGKIYGIDAA 98
IR+ T +A LE ++A L + +LE + W+ GF+ + + Y G ++ +A+
Sbjct: 36 IRINTL-KAPLEYVKARLEERYELEPIPWVKEGFFI--NTREFGDMIEYALGLVFPQEAS 92
Query: 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158
S L+ + VLD+ AAPGAK I + + G + D+ + R L ++
Sbjct: 93 SMIPPVVLDPKPRELVLDMAAAPGAKTTQIAQYMKNEGCIIANDLKKWRANVLIANLNRF 152
Query: 159 ALGDRCRLFVADGTTFSLAPL---RLLLDPGSCNSV 191
+ + R+ V DG FS R+LLD C+SV
Sbjct: 153 GVLN-ARVTVKDGIYFSRFENTFDRVLLD-APCSSV 186
>gi|18314169|ref|NP_560836.1| sun family protein [Pyrobaculum aerophilum str. IM2]
gi|18161759|gb|AAL65018.1| sun family protein [Pyrobaculum aerophilum str. IM2]
Length = 414
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
D AS AV +LN GD ++DL AAPG K +I + + VD++ R++ R LL
Sbjct: 221 DLASIYAVLSLNPQPGDRIIDLAAAPGMKTSLIAQLAEGRAKIVAVDLSAKRVSRMRHLL 280
Query: 156 QKYALGDRCRLFVADG 171
+ G + AD
Sbjct: 281 KNLGAGGFVEVVRADS 296
>gi|341582142|ref|YP_004762634.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. 4557]
gi|340809800|gb|AEK72957.1| tRNA/rRNA cytosine-C5-methylase [Thermococcus sp. 4557]
Length = 451
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y++GK D AS L G+ VLDL AAPG+K ++ + G + VD +
Sbjct: 238 YREGKFVIQDLASAYVAHVLAPEPGERVLDLAAAPGSKTFHAAALMENKGEIIAVDYSYD 297
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTF 174
RL + ++ + + +L ADG +F
Sbjct: 298 RLMRMKEKMKLLGIKN-VKLVHADGQSF 324
>gi|254490995|ref|ZP_05104176.1| ribosomal RNA small subunit methyltransferase B [Methylophaga
thiooxidans DMS010]
gi|224463508|gb|EEF79776.1| ribosomal RNA small subunit methyltransferase B [Methylophaga
thiooxydans DMS010]
Length = 406
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 67 VWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLC 126
V LS Y + T MA Q D A+ V L+I H+LD CAAPG K C
Sbjct: 182 VLLSKAYDVNALPNFETGMASVQ------DGAAQLVVKMLDIQPDQHILDACAAPGGKSC 235
Query: 127 MILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA-------DGTTFSLAPL 179
IL+ D+ ++ +D++ RL L + LG + + A DG F
Sbjct: 236 HILEQHPDN-TLVALDISAERLKQIEQNLSRLQLGAQLKAADASDTDAWWDGELFD---- 290
Query: 180 RLLLD-PGSCNSVLQEKDD 197
R+L+D P S + V++ D
Sbjct: 291 RILIDAPCSGSGVIRRHPD 309
>gi|355560554|gb|EHH17240.1| hypothetical protein EGK_13590, partial [Macaca mulatta]
Length = 399
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y+ G + D AS LN G HV+D CAAPG K + ++ + G + D+
Sbjct: 132 YRAGHLILQDRASCLPAMLLNPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAK 191
Query: 147 RLAACRTLLQK 157
RLA+ TLL +
Sbjct: 192 RLASMATLLAR 202
>gi|326437848|gb|EGD83418.1| hypothetical protein PTSG_04026 [Salpingoeca sp. ATCC 50818]
Length = 301
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
Y +D AS AL++ GD VLD+CAAPG K ++ + +GD G +T D + R A
Sbjct: 84 YLMDGASIFPALALDVEEGDCVLDMCAAPGGKSLILAEHLGDRGLLTSNDPSAARRARLG 143
Query: 153 TLLQKY 158
+L++Y
Sbjct: 144 RVLREY 149
>gi|229140511|ref|ZP_04269066.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
BDRD-ST26]
gi|228643072|gb|EEK99348.1| rRNA SAM-dependent methyltransferase RmsB [Bacillus cereus
BDRD-ST26]
Length = 360
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+A + A+K+G + D +S AL GD VLD CAAPG K I + + +G V
Sbjct: 135 VAHTDAFKKGFLSIQDESSMLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMS 194
Query: 141 VDVARHRLAACRTLLQKYALGD 162
+D+ H++ + ++ LG+
Sbjct: 195 LDLHAHKVRLIKQQAERLGLGN 216
>gi|195441370|ref|XP_002068484.1| GK20395 [Drosophila willistoni]
gi|194164569|gb|EDW79470.1| GK20395 [Drosophila willistoni]
Length = 457
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 93 YGI--DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAA 150
YG+ + S V LN GD VLD+CAAPG K I +++ D G + +D ++ R+ A
Sbjct: 215 YGLLQNLPSMVCVRVLNPQPGDRVLDMCAAPGNKTSHIAELMRDQGVLVALDNSKSRIKA 274
Query: 151 CRTLLQKY 158
++ + Y
Sbjct: 275 MQSRIGHY 282
>gi|379005606|ref|YP_005261278.1| tRNA and rRNA cytosine-C5-methylase [Pyrobaculum oguniense TE7]
gi|375161059|gb|AFA40671.1| tRNA and rRNA cytosine-C5-methylase [Pyrobaculum oguniense TE7]
Length = 414
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%)
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
D AS AV +L GD ++DL AAPG K +I + + VD++ R+A R LL
Sbjct: 220 DLASIYAVLSLRPEPGDRIIDLAAAPGMKTSLIAQLAEGRAKIVAVDLSAKRVARMRHLL 279
Query: 156 QKYALGD 162
+ GD
Sbjct: 280 KNLGAGD 286
>gi|284047695|ref|YP_003398034.1| sun protein [Acidaminococcus fermentans DSM 20731]
gi|283951916|gb|ADB46719.1| sun protein [Acidaminococcus fermentans DSM 20731]
Length = 446
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 92 IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAAC 151
IY D +S + L+ G+ VLDLC+APG K + + D G + +D+ H+L
Sbjct: 239 IYIQDESSMLDAAVLDPQPGERVLDLCSAPGGKTTHLAQKMQDQGEILALDLYDHKLDLV 298
Query: 152 RTLLQKYALGDRC-RLFVADGTTF 174
R ++ LG C R DGT F
Sbjct: 299 RENARR--LGIHCIRTEKQDGTVF 320
>gi|160939071|ref|ZP_02086422.1| hypothetical protein CLOBOL_03965 [Clostridium bolteae ATCC
BAA-613]
gi|158438034|gb|EDP15794.1| hypothetical protein CLOBOL_03965 [Clostridium bolteae ATCC
BAA-613]
Length = 393
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 21/178 (11%)
Query: 42 IRLKTGNEADLEEIEAELKCKLEKVVWL-SGFY---SLPPDI-KIATSMAYKQGKIYGID 96
++L G A+L + LE V W +GFY +L ++ + + AY G Y +
Sbjct: 48 LKLSPGELAEL------VPWNLEPVPWADNGFYYDGTLDGEVLRPSKHPAYYAGLYYLQE 101
Query: 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156
++ + L + GD VLDLCAAPG K + + G + D++ R R LL+
Sbjct: 102 PSAMTPAAMLPVVPGDRVLDLCAAPGGKSTELASKLKGRGMLVSNDISYSR---ARALLK 158
Query: 157 KYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
L + V LA + ++L+D P S + + +D ++W + P
Sbjct: 159 NLELAGAANICVTSEAPEKLAGVWPEFFDKILVDAPCSGEGMFRRDEDMVKDWNEKGP 216
>gi|374313841|ref|YP_005060270.1| ribosomal RNA small subunit methyltransferase B [Serratia
symbiotica str. 'Cinara cedri']
gi|363988067|gb|AEW44258.1| ribosomal RNA small subunit methyltransferase B [Serratia
symbiotica str. 'Cinara cedri']
Length = 429
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 19/130 (14%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+ G I DA++ +S LN + +LDLCAAPG K IL+ V +D+ +
Sbjct: 222 GFTDGWITIQDASAQGCISLLNPQNNEQILDLCAAPGGKTTHILE-AAPKAKVMAIDINQ 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTT---------FSLAPLRLLLD-PGSCNSVLQEK 195
R+ + LQ+ L +L DG T F R+LLD P S + V++
Sbjct: 281 QRITRIKENLQRLHLHAEIKL--GDGRTPQQWCGNKQFD----RILLDAPCSASGVIRRH 334
Query: 196 DDTFREWTSR 205
D +W R
Sbjct: 335 PDI--KWLRR 342
>gi|118431884|ref|NP_148630.2| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1]
gi|116063207|dbj|BAA81481.2| RNA (cytosine-C(5)-)-methyltransferase [Aeropyrum pernix K1]
Length = 451
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 13/104 (12%)
Query: 65 KVVWLSGFYSLPPDIKIATSMAYK------------QGKIYGIDAASGAAVSALNISAGD 112
K + SG Y+ P D ++ + Y+ +GKI D +S AA L G+
Sbjct: 202 KAIRSSGLYAWPSD-RVEGVIRYRGPFNDTLARLLAEGKIVPQDESSAAAAPLLQPRPGE 260
Query: 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156
VLD+CAAPG K + ++ + G D+ RL +TL++
Sbjct: 261 IVLDMCAAPGGKTTHLAELSRLQARILGFDIYWDRLRRMKTLVE 304
>gi|85000949|ref|XP_955193.1| nucleolar protein [Theileria annulata strain Ankara]
gi|65303339|emb|CAI75717.1| nucleolar protein, putative [Theileria annulata]
Length = 366
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 18/113 (15%)
Query: 66 VVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNI----SAGDH-VLDLCAA 120
V+WL D+++ + YG+DA+S A V +L + SA + VLD+C A
Sbjct: 71 VLWLR-------DVEVYNTTGNIPPSCYGLDASSAAVVDSLRLKRLSSAKEAWVLDMCCA 123
Query: 121 PGAKLCMILD----IIGDSG-SVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168
PG KL +D I D+ ++ G+D + R+ C+++L+K L DR R+ V
Sbjct: 124 PGGKLFATIDAADKIRSDTKWNIIGLDSSIRRIELCKSMLKK-ELFDRDRIDV 175
>gi|421615476|ref|ZP_16056500.1| 16S rRNA methyltransferase B [Pseudomonas stutzeri KOS6]
gi|409782549|gb|EKN62104.1| 16S rRNA methyltransferase B [Pseudomonas stutzeri KOS6]
Length = 440
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 16/121 (13%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +GK+ D A+ A S L+++ G VLD C APG K C +L+ +T +D+
Sbjct: 220 FAEGKVSVQDEAAQLAASLLDLAPGQRVLDACCAPGGKTCHLLEREPQLAGLTALDLEPK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVA---------DGTTFSLAPLRLLLD-PGSCNSVLQEKD 196
RLA + L + L L A DG F R+LLD P S V++
Sbjct: 280 RLARVQENLDRLQLS--AELVAADARATAQWWDGRPFQ----RILLDAPCSATGVIRRHP 333
Query: 197 D 197
D
Sbjct: 334 D 334
>gi|398304097|ref|ZP_10507683.1| 16S rRNA methyltransferase B [Bacillus vallismortis DV1-F-3]
Length = 447
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 17/128 (13%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + + G++ D +S AL+ G+ VLD CAAPG K I +++ + GS++
Sbjct: 222 IAGTHFFLNGEVSIQDESSMLVARALDPKPGETVLDACAAPGGKSAHIGELMENKGSISS 281
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVAD---------GTTFSLAPL-RLLLD-PGSCN 189
+D+ +H++ L+++ A DR L + D G TF R+L+D P S
Sbjct: 282 LDLHKHKV----KLIKEAA--DRLGLTIIDAQEMDARKAGETFENEQFDRVLVDAPCSGF 335
Query: 190 SVLQEKDD 197
V++ K D
Sbjct: 336 GVIRRKPD 343
>gi|389840619|ref|YP_006342703.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Cronobacter sakazakii
ES15]
gi|387851095|gb|AFJ99192.1| rRNA (cytosine-C(5)-)-methyltransferase RsmF [Cronobacter sakazakii
ES15]
Length = 480
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 100/224 (44%), Gaps = 22/224 (9%)
Query: 14 LPEAFLDFLKEN---GLDPSVYSAADSTP--RYIRLKTG--NEADLEEIEAELKCKLEKV 66
LPEAFLD ++E GL + AA P R IR+ T + AD A +L V
Sbjct: 9 LPEAFLDVMREAMPAGLAMDDFIAACQRPLRRSIRVNTLKISVADFLAQVAPYGWQLTPV 68
Query: 67 VWL-SGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSALNISAGD--HVLDLCAA 120
W GF+ D + + ++ + G+ Y +A+S V+AL V+D+ AA
Sbjct: 69 PWCPEGFWIERDDEDALPLGSTAEHLSGQFYIQEASSMLPVAALFADGNTPARVMDVAAA 128
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA-PL 179
PG+K I ++ + G + + + R+ + + + + L DG F A P
Sbjct: 129 PGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGIHN-VGLTHFDGRVFGAALPE 187
Query: 180 R---LLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARE 219
+ +LLD P S V+++ D R W+ P ++ A RE
Sbjct: 188 QFDAILLDAPCSGEGVVRKDPDALRNWS---PQSNQEIAATQRE 228
>gi|379726842|ref|YP_005319027.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
plutonius DAT561]
gi|376317745|dbj|BAL61532.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
plutonius DAT561]
Length = 453
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD--SGS 137
++ATS +++GK+ D +S A L I + VLD CAAPG K I + G
Sbjct: 227 RLATSSLFREGKLTIQDESSMLAAPTLQIDESNQVLDACAAPGGKTTHIATFLNQQKQGK 286
Query: 138 VTGVDVARHRLAACR 152
+ +D+ H+L +
Sbjct: 287 IIALDIHDHKLKLIK 301
>gi|319937497|ref|ZP_08011902.1| SUN protein [Coprobacillus sp. 29_1]
gi|319807337|gb|EFW03946.1| SUN protein [Coprobacillus sp. 29_1]
Length = 416
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 67 VWLSGFYSLPPDI------KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
+W G L PD IA + Y++G + D +S LN +++LD+C A
Sbjct: 192 MWSEG--QLSPDCLYYQRGNIANTKYYQEGLVTIQDESSQMVARLLNPQPHEYILDMCCA 249
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF-SLAPL 179
PG K + ++ + G + D+ H++ + +Q+ + D + D T L P
Sbjct: 250 PGGKTSHLAALMKNQGRIDAYDLYEHKIPLVKEQMQRLGV-DIVHVQAYDSTHLIELYPA 308
Query: 180 ----RLLLD-PGSCNSVLQEK 195
R+LLD P S VL K
Sbjct: 309 DTFDRILLDAPCSGLGVLARK 329
>gi|71278391|ref|YP_266800.1| sun protein [Colwellia psychrerythraea 34H]
gi|71144131|gb|AAZ24604.1| sun protein [Colwellia psychrerythraea 34H]
Length = 440
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 12/141 (8%)
Query: 39 PRYIRLKTGN------EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKI 92
P ++R+ + +A LEE E E+ V S L + +A + G +
Sbjct: 177 PMWLRVNQQHHTSEQYQALLEEAEIEIA----HVEPNSQAIELAKPLDVAKLPGFDDGWV 232
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
D A+ A L+ D VLD CAAPG K C I++ D S+T +D+ RL
Sbjct: 233 SIQDGAAQQAARLLDCQPNDIVLDCCAAPGGKTCHIIEQTPDIASMTAIDIEEGRLTRVH 292
Query: 153 TLLQKYALGDRCRLFVADGTT 173
L + L + AD T
Sbjct: 293 ENLDRLNL--TANVITADAAT 311
>gi|45358689|ref|NP_988246.1| proliferating-cell nucleolar antigen [Methanococcus maripaludis S2]
gi|45047555|emb|CAF30682.1| putative proliferating-cell nucleolar antigen [Methanococcus
maripaludis S2]
Length = 292
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
LN S D VLD+CAAPG K + ++ + GS+ V++ ++RL + R+ + + +
Sbjct: 99 TLNPSKDDEVLDMCAAPGGKTTHLAQLMENEGSILAVEINKNRLKSLRSNINRMGFKN 156
>gi|291548279|emb|CBL21387.1| NOL1/NOP2/sun family [Ruminococcus sp. SR1/5]
Length = 389
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 10/108 (9%)
Query: 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
S L I GD VLDLCAAPG K + + D+G + D++ R R LL+ L
Sbjct: 4 ASRLPIEPGDFVLDLCAAPGGKATALGAALNDTGFLLANDISTSR---ARALLRNLELFG 60
Query: 163 RCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
+ V D LA ++LLD P S + ++++ R+WT
Sbjct: 61 MKNMLVTDEKPAKLAQRFPAFFNKILLDAPCSGEGMFRKEEALARDWT 108
>gi|332685780|ref|YP_004455554.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
plutonius ATCC 35311]
gi|332369789|dbj|BAK20745.1| ribosomal RNA small subunit methyltransferase B [Melissococcus
plutonius ATCC 35311]
Length = 453
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD--SGS 137
++ATS +++GK+ D +S A L I + VLD CAAPG K I + G
Sbjct: 227 RLATSSLFREGKLTIQDESSMLAAPTLQIDESNQVLDACAAPGGKTTHIATFLNQQKQGK 286
Query: 138 VTGVDVARHRLAACR 152
+ +D+ H+L +
Sbjct: 287 IIALDIHDHKLKLIK 301
>gi|224061230|ref|XP_002300381.1| predicted protein [Populus trichocarpa]
gi|222847639|gb|EEE85186.1| predicted protein [Populus trichocarpa]
Length = 527
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 14/203 (6%)
Query: 10 SKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWL 69
+KL E + + N +PS A+S K ADL LK E + L
Sbjct: 239 TKLLGQEKAIKLMMWNNDNPSFSLRANSG------KGVTRADLVMQFNMLKVPHELSLHL 292
Query: 70 SGFYSLPPDIKIATSMAY-KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
F + ++I KQG D ++G VS +N GD ++D CAAPG K +
Sbjct: 293 DHFVRVKTGLQIVIQAGLLKQGLCAVQDESAGLIVSVVNPQPGDSIIDCCAAPGGKTLYM 352
Query: 129 LDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS----LAPLRLLLD 184
+ G + +D+ + RL + + + + +D TF+ L ++LLD
Sbjct: 353 ASQMHGQGMLYAIDINKGRLRIVKETAKLHQVDGVITTIPSDLRTFAESYQLKSDKVLLD 412
Query: 185 -PGSCNSVLQEKDDTFREWTSRI 206
P S VL ++ D W R+
Sbjct: 413 APCSGLGVLSKRADL--RWNRRL 433
>gi|310658497|ref|YP_003936218.1| putative RNA methylase, NOL1/NOP2/sun family [[Clostridium]
sticklandii]
gi|308825275|emb|CBH21313.1| putative RNA methylase, NOL1/NOP2/sun family [[Clostridium]
sticklandii]
Length = 455
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 20/206 (9%)
Query: 14 LPEAFLDFLKE-NGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKL--EKVVW-L 69
LP+ FLD +K D + + P Y L+ N + ++E + E++ W
Sbjct: 4 LPQKFLDEMKVLFKQDYDKFINTYNNPSYYGLR-ANTLKISKLELKAIADFIGEEIPWSQ 62
Query: 70 SGFYSLPPDI--KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCM 127
GFY DI + A S Y G Y + ++ A V+ + I G VLD+CAAPG K
Sbjct: 63 DGFYY---DINQRPAKSPLYHAGLYYIQEPSAMAVVNNIEIQPGMKVLDICAAPGGKTIN 119
Query: 128 ILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL------RL 181
I + G + D+ R A ++ Y + + + + L + R+
Sbjct: 120 IASKLKGEGLLVSNDINNQRTKAILKNIELYGVSNA---LITNENHHVLEKVFLEFFDRI 176
Query: 182 LLD-PGSCNSVLQEKDDTFREWTSRI 206
+LD P S + ++ +D + W +
Sbjct: 177 ILDAPCSGEGMFRKDEDLIKSWERSV 202
>gi|220905585|ref|YP_002480897.1| Fmu (Sun) domain-containing protein [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219869884|gb|ACL50219.1| Fmu (Sun) domain protein [Desulfovibrio desulfuricans subsp.
desulfuricans str. ATCC 27774]
Length = 462
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ +S+A G IY D +S AL +AG VLD+CA+PG+K + ++G +G V G
Sbjct: 54 LGSSLAAFFGYIYIQDRSSMLPPLALAPAAGSAVLDMCASPGSKTGFLAQLVGRTGFVLG 113
Query: 141 VDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVL 192
+ + RLA R L + F+ GT S + L L PGS ++L
Sbjct: 114 NEPSPSRLATLRANLHQCG-------FIHTGTC-SYSGDALPLRPGSWKNIL 157
>gi|422973942|ref|ZP_16976039.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA124]
gi|371596153|gb|EHN84993.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA124]
Length = 429
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K+ IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKITHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>gi|344343738|ref|ZP_08774605.1| tRNA (cytosine-5-)-methyltransferase [Marichromatium purpuratum
984]
gi|343804722|gb|EGV22621.1| tRNA (cytosine-5-)-methyltransferase [Marichromatium purpuratum
984]
Length = 506
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%)
Query: 50 ADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNIS 109
A L + AE E + L G L P+ +I Y G + + S L+++
Sbjct: 59 AGLAALLAEEGVAAEPLAALPGALRLAPEARIGQHWWYCAGLAHAQELVSQLPALLLDLA 118
Query: 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
G VLD+CAAPG K I +G+ G++ D++ R+ A + L + +
Sbjct: 119 PGQRVLDMCAAPGGKTAQIAFALGNRGTLVANDISSDRIKALQGNLDRLGV 169
>gi|386620896|ref|YP_006140476.1| 16S ribosomal RNA methyltransferase B [Escherichia coli NA114]
gi|387831166|ref|YP_003351103.1| putative rRNA methylase [Escherichia coli SE15]
gi|432423694|ref|ZP_19666232.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE178]
gi|432501843|ref|ZP_19743594.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE216]
gi|432560556|ref|ZP_19797211.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE49]
gi|432696153|ref|ZP_19931345.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE162]
gi|432707630|ref|ZP_19942706.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE6]
gi|432922420|ref|ZP_20125264.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE173]
gi|432929150|ref|ZP_20130200.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE175]
gi|432982732|ref|ZP_20171502.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE211]
gi|433098088|ref|ZP_20284263.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE139]
gi|433107536|ref|ZP_20293500.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE148]
gi|281180323|dbj|BAI56653.1| putative rRNA methylase [Escherichia coli SE15]
gi|333971397|gb|AEG38202.1| 16S ribosomal RNA methyltransferase B [Escherichia coli NA114]
gi|430942038|gb|ELC62176.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE178]
gi|431026022|gb|ELD39097.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE216]
gi|431088617|gb|ELD94487.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE49]
gi|431231379|gb|ELF27140.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE162]
gi|431255164|gb|ELF48418.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE6]
gi|431435418|gb|ELH17027.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE173]
gi|431440558|gb|ELH21886.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE175]
gi|431489330|gb|ELH68957.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE211]
gi|431613116|gb|ELI82317.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE139]
gi|431624661|gb|ELI93259.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE148]
Length = 429
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+++G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEEGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVLAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRNPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>gi|210615571|ref|ZP_03290669.1| hypothetical protein CLONEX_02887 [Clostridium nexile DSM 1787]
gi|210150238|gb|EEA81247.1| hypothetical protein CLONEX_02887 [Clostridium nexile DSM 1787]
Length = 460
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 69/161 (42%), Gaps = 5/161 (3%)
Query: 52 LEEIEAELKCKLEKVVWL-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISA 110
+EE + +++ V W+ +GFY ++ A Y G Y + ++ + L I
Sbjct: 43 VEEFKKICPFEIQPVPWIENGFYYDGEHVQPAKHPYYFAGLFYLQEPSAMTPANRLPIEP 102
Query: 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD 170
GD VLD+CAAPG K + + G + D++ R ++ + +G+ L
Sbjct: 103 GDKVLDVCAAPGGKATELGAKLCGEGVLVANDISNSRAKGLLKNIEVFGIGNVLVLSEEP 162
Query: 171 GTT---FSLAPLRLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
G F+ ++L+D P S + ++ + W P
Sbjct: 163 GKIEEYFTEYFDKILIDAPCSGEGMFRKDKKMVKAWEEHGP 203
>gi|387812477|ref|YP_005427954.1| 16S rRNA m5C967 methyltransferase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381337484|emb|CCG93531.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 433
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
++ G + D A+ + +++ G VLD CAAPG K C IL+ G V +D +
Sbjct: 220 FEDGAVSVQDEAAQLCTTLMDLQPGQRVLDACAAPGGKTCAILEACGALDEVVAIDESAE 279
Query: 147 RLAACRTLLQKYALGDRCRLFVA-------DGTTFSLAPLRLLLD-PGSCNSVLQEKDD 197
RL + L + L A DGT F R+LLD P S V++ D
Sbjct: 280 RLPRVQENLDRLDLQATLTQADAADIDSWWDGTPFD----RILLDVPCSATGVIRRHPD 334
>gi|399010725|ref|ZP_10713085.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM17]
gi|398106087|gb|EJL96141.1| ribosomal RNA small subunit methyltransferase RsmB [Pseudomonas sp.
GM17]
Length = 388
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L ++ G VLD C APG K C IL++ + VD+
Sbjct: 167 FAEGWISVQDEAAQLAAELLELAPGQRVLDACCAPGGKTCHILEVEPALAGMVAVDLEAK 226
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSL----APL-RLLLD-PGSCNSVLQEKDD 197
RL + L + L R L ADG + P R+LLD P S V++ D
Sbjct: 227 RLVRVQENLDRLNL--RAELIAADGRDTAAWWDGKPFQRILLDAPCSATGVIRRHPD 281
>gi|355745255|gb|EHH49880.1| hypothetical protein EGM_00611 [Macaca fascicularis]
gi|380812640|gb|AFE78194.1| putative methyltransferase NSUN4 [Macaca mulatta]
gi|383418253|gb|AFH32340.1| putative methyltransferase NSUN4 [Macaca mulatta]
Length = 384
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
Y +DAAS V AL + GD VLDLCAAPG K +L G ++ D++ R+A +
Sbjct: 156 YLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQ-TGCCRNLAANDLSTSRIARLQ 214
Query: 153 TLLQKYAL-----GDRCRLFVADG 171
+L Y G+R R+ DG
Sbjct: 215 KILHSYVPQEIRDGNRVRVTSWDG 238
>gi|357406751|ref|YP_004918675.1| ribosomal RNA small subunit methyltransferase B [Methylomicrobium
alcaliphilum 20Z]
gi|351719416|emb|CCE25092.1| Ribosomal RNA small subunit methyltransferase B [Methylomicrobium
alcaliphilum 20Z]
Length = 429
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 66/158 (41%), Gaps = 9/158 (5%)
Query: 15 PEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYS 74
PE L EN L A T R + G E++ A +E + S
Sbjct: 153 PEQAGHLLAENNLQ------APMTLRVNSARIGRTEYKEQLAAAQLGAIETSEYPSALIL 206
Query: 75 LPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD 134
P + + + +G + D A+ + L++ VLD+CAAPG K IL++ +
Sbjct: 207 ERP-VPVEQLPGFSEGLVSVQDLAAQLSAELLDLKPNQRVLDVCAAPGGKSAHILEMQAN 265
Query: 135 SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
+T +D+ +R+ R L++ L C VAD +
Sbjct: 266 LSGLTAIDIDANRMQKVRDTLRRLRLDAEC--IVADAS 301
>gi|355557964|gb|EHH14744.1| hypothetical protein EGK_00715 [Macaca mulatta]
Length = 384
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
Y +DAAS V AL + GD VLDLCAAPG K +L G ++ D++ R+A +
Sbjct: 156 YLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQ-TGCCRNLAANDLSTSRIARLQ 214
Query: 153 TLLQKYAL-----GDRCRLFVADG 171
+L Y G+R R+ DG
Sbjct: 215 KILHSYVPQEIRDGNRVRVTSWDG 238
>gi|410091107|ref|ZP_11287684.1| 16S rRNA methyltransferase B [Pseudomonas viridiflava UASWS0038]
gi|409761675|gb|EKN46734.1| 16S rRNA methyltransferase B [Pseudomonas viridiflava UASWS0038]
Length = 436
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L ++ G VLD C APG K C +L++ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVA---------DGTTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL R L + LG L A DG F R+LLD P S V++
Sbjct: 280 RLVRVRENLDR--LGLDAELIAADARETAQWWDGKPFQ----RILLDAPCSATGVIRRHP 333
Query: 197 D 197
D
Sbjct: 334 D 334
>gi|57642239|ref|YP_184717.1| tRNA/rRNA cytosine-C5-methylase NOL1/NOP2/Sun family protein
[Thermococcus kodakarensis KOD1]
gi|57160563|dbj|BAD86493.1| tRNA/rRNA cytosine-C5-methylase, NOL1/NOP2/Sun family, fused to
N-terminal NusB regulator domain [Thermococcus
kodakarensis KOD1]
Length = 450
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 3/89 (3%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
YK+GK D AS L+ G+ +LDL AAPG+K ++ + G + VD +
Sbjct: 238 YKEGKFVIQDLASAYVAHVLSPEPGERLLDLAAAPGSKTFHAAALMENKGEIVAVDYSYD 297
Query: 147 RLAACRTLLQKYALGDRCRLFV-ADGTTF 174
RL R + LG + FV ADG +F
Sbjct: 298 RL--MRMKEKAKVLGVKNVRFVHADGQSF 324
>gi|392957476|ref|ZP_10322999.1| 16S rRNA methyltransferase B [Bacillus macauensis ZFHKF-1]
gi|391876439|gb|EIT85036.1| 16S rRNA methyltransferase B [Bacillus macauensis ZFHKF-1]
Length = 457
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
++ + ++ QG + D +S L + +LD CAAPG K I +++ +SGSV
Sbjct: 222 LSQTQSFSQGYVTIQDESSMLVARGLGPKESETILDACAAPGGKTTHIAELLNNSGSVVA 281
Query: 141 VDVARHRL 148
+D+ +H++
Sbjct: 282 LDLHKHKV 289
>gi|254447515|ref|ZP_05060981.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium HTCC5015]
gi|198262858|gb|EDY87137.1| ribosomal RNA small subunit methyltransferase B [gamma
proteobacterium HTCC5015]
Length = 431
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 86/208 (41%), Gaps = 26/208 (12%)
Query: 6 DGEISKLPLPEAFLDFLKENGLDPSVYSAADS---TPRYIRLKTGNEADLEEIEAELKCK 62
D E ++ LP L+FL+ N D A S P +R+ G + + L +
Sbjct: 133 DEEAAQHSLPRWLLNFLEGNWPDQWTGIAEASLAKPPMTLRISGGARDQYRQRLSALDIE 192
Query: 63 L---EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCA 119
E+ W ++ P + + +G+ DAA+ A LN AG+ VLD CA
Sbjct: 193 CHAPERADWA---LTITPPVDTDVLPGFAKGEASVQDAAAQWAAPLLNPQAGERVLDACA 249
Query: 120 APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD--------- 170
APG K +L+ + + +D+ RLA L + LG L AD
Sbjct: 250 APGGKTGHMLE-WASALDLVALDLEPKRLARVEQNLTR--LGRSAELLSADLRDTARWWN 306
Query: 171 GTTFSLAPLRLLLD-PGSCNSVLQEKDD 197
G F R+LLD P S + V++ D
Sbjct: 307 GQAFD----RILLDAPCSASGVIRRHPD 330
>gi|406876046|gb|EKD25732.1| hypothetical protein ACD_79C01534G0001, partial [uncultured
bacterium]
Length = 247
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVT 139
K+ + YKQG Y +S L GD +LD+ AAPG+K + ++GDSG +
Sbjct: 6 KLTETELYKQGCFYIQSLSSMIPPLLLAPKKGDKILDITAAPGSKTTQMAAMMGDSGEIV 65
Query: 140 GVDVARHRLAACRTLLQ 156
D+++ RL + L+
Sbjct: 66 ANDLSQIRLLRLKNNLK 82
>gi|408673320|ref|YP_006873068.1| Fmu (Sun) domain protein [Emticicia oligotrophica DSM 17448]
gi|387854944|gb|AFK03041.1| Fmu (Sun) domain protein [Emticicia oligotrophica DSM 17448]
Length = 401
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 5/175 (2%)
Query: 28 DPSVYSAADSTPRYIRLKT--GNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSM 85
+ +++ P +R T N+ DL+ +E+ + E + ++ LP + ++
Sbjct: 141 EAELHAMNTQAPVVLRTNTLKTNKLDLKASFSEIGIETETLPNVTDALVLPKRANVFSTE 200
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+K+G DA S L++ AG V+D CA G K + ++ + G + +DV
Sbjct: 201 LFKKGFFEVQDAGSQLIAEYLDVQAGMRVIDACAGAGGKTLHLATLMENKGRIIAMDVED 260
Query: 146 HRLAACRTLLQKYALGD-RCRLFVADGTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
++L + ++ +G+ RL A RLLLD P S VL+ D
Sbjct: 261 YKLQELQRRAKRNGIGNVETRLIEAKTIKRQRETADRLLLDVPCSGLGVLRRNPD 315
>gi|309806235|ref|ZP_07700249.1| NOL1/NOP2/sun family protein [Lactobacillus iners LactinV 03V1-b]
gi|308167382|gb|EFO69547.1| NOL1/NOP2/sun family protein [Lactobacillus iners LactinV 03V1-b]
Length = 469
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ + +I G++VLDLCAAPG K +I + + G + +++ R
Sbjct: 77 GYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLKNEGVLVANEISSKRAK 136
Query: 150 ACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD------PGSCNSVLQEKDDTFREWT 203
R L+K+ G + + + + D P S + ++ DD + W+
Sbjct: 137 ELRENLEKW--GTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGEGMFRKSDDAIKYWS 194
Query: 204 S 204
Sbjct: 195 Q 195
>gi|256847372|ref|ZP_05552818.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
coleohominis 101-4-CHN]
gi|256716036|gb|EEU31011.1| ribosomal RNA small subunit methyltransferase B [Lactobacillus
coleohominis 101-4-CHN]
Length = 447
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDS-GSVT 139
+ TS A+ G + D ++ AV AL + + VLD CAAPG K I + + G V
Sbjct: 223 VLTSAAFANGMVTIQDESAMLAVEALQLRGDERVLDACAAPGGKTGQIAAALDPAMGQVD 282
Query: 140 GVDVARHRLAACRTLLQKYALGDRC 164
+D+ +H++ R +++ + +R
Sbjct: 283 ALDIHQHKVRLIRKNMERLGVANRV 307
>gi|380796409|gb|AFE70080.1| putative methyltransferase NSUN5 isoform 3, partial [Macaca
mulatta]
Length = 414
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y+ G + D AS LN G HV+D CAAPG K + ++ + G + D+
Sbjct: 188 YRAGHLILQDRASCLPAMLLNPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAK 247
Query: 147 RLAACRTLLQK 157
RLA+ TLL +
Sbjct: 248 RLASMATLLAR 258
>gi|379719867|ref|YP_005311998.1| hypothetical protein PM3016_1945 [Paenibacillus mucilaginosus 3016]
gi|378568539|gb|AFC28849.1| hypothetical protein PM3016_1945 [Paenibacillus mucilaginosus 3016]
Length = 503
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 14 LPEAFLDFLKEN-GLDPSVYSAADSTPRYIRLKTG----NEADLEEIEAELKCKLEKVVW 68
LP+AFL +KE G + + A+ R L+ + A E+ + +L+ + W
Sbjct: 9 LPQAFLLHMKELLGEEYPAFEASYGEDRLYGLRVNPLKISPAAFREL---TEWELKPIPW 65
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMI 128
+ ++ Y G Y + ++ A V L++ G VLDLCAAPG K +
Sbjct: 66 APEGFYYEEGVRPGKHPHYHAGLYYIQEPSAMAPVELLDVQPGHRVLDLCAAPGGKTTQL 125
Query: 129 LDIIGDSGSVTGVDVARHRLAA 150
+ +G V D+ R+ A
Sbjct: 126 AGKLQGTGLVAANDIHSERVKA 147
>gi|365991930|ref|XP_003672793.1| hypothetical protein NDAI_0L00650 [Naumovozyma dairenensis CBS 421]
gi|410729813|ref|XP_003671085.2| hypothetical protein NDAI_0G00660 [Naumovozyma dairenensis CBS 421]
gi|401779904|emb|CCD25842.2| hypothetical protein NDAI_0G00660 [Naumovozyma dairenensis CBS 421]
Length = 496
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 53/123 (43%), Gaps = 20/123 (16%)
Query: 33 SAADSTP-RYIR---LKTGNEADLEEIEAELKCKLEKVV---------------WLSGFY 73
S D TP R+IR L+ D+ + EL K K V ++ Y
Sbjct: 146 STEDVTPVRWIRINPLRCYQGRDVNAVLEELGKKFPKRVENWNDIVPGSIYYDEYIPHLY 205
Query: 74 SLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD-II 132
+ P KI + YKQGKI D AS LN S D ++D CAAPG K + +
Sbjct: 206 GIHPQDKITSHELYKQGKIIIQDRASCFPAHILNPSKDDIIIDACAAPGNKTTHVASYMF 265
Query: 133 GDS 135
GD+
Sbjct: 266 GDA 268
>gi|422665994|ref|ZP_16725864.1| 16S rRNA methyltransferase B, partial [Pseudomonas syringae pv.
aptata str. DSM 50252]
gi|330976420|gb|EGH76476.1| 16S rRNA methyltransferase B [Pseudomonas syringae pv. aptata str.
DSM 50252]
Length = 416
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L ++ G VLD C APG K C +L++ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVA---------DGTTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL R L + LG L A DG F R+LLD P S V++
Sbjct: 280 RLVRVRENLDR--LGLDAELIAADARETAQWWDGKPFQ----RILLDAPCSATGVIRRHP 333
Query: 197 D 197
D
Sbjct: 334 D 334
>gi|297288127|ref|XP_001110343.2| PREDICTED: putative methyltransferase NSUN5-like isoform 1 [Macaca
mulatta]
Length = 470
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y+ G + D AS LN G HV+D CAAPG K + ++ + G + D+
Sbjct: 203 YRAGHLILQDRASCLPAMLLNPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAK 262
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSCN 189
RLA+ TLL + + C L D S + R +LLDP SC+
Sbjct: 263 RLASMATLLARAGISC-CELAEEDFLAVSPSDPRYREVHYILLDP-SCS 309
>gi|218190325|gb|EEC72752.1| hypothetical protein OsI_06382 [Oryza sativa Indica Group]
Length = 479
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 11/159 (6%)
Query: 39 PRYIR---LKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGI 95
PR++R L+T ++ +EE+ K +++V LPP + +GK++
Sbjct: 149 PRFLRVNTLRTSTDSVVEELNKIHKVDKDELV--PDLLVLPPGTDLHNHHLVSEGKVFLQ 206
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
AS AL G V+D CAAPG K + ++ GS+T ++ + R + +
Sbjct: 207 GKASCMVAVALCPEPGWKVIDACAAPGNKTVHLAALMNGEGSITACELNKERTKTLQNTI 266
Query: 156 QKYALGD----RCRLFVADGTTFSLAPLR-LLLDPGSCN 189
++ + D S A +R +LLDP SC+
Sbjct: 267 RRSGANNIETINGDFLDIDSNDPSYAEVRAILLDP-SCS 304
>gi|380795877|gb|AFE69814.1| putative methyltransferase NSUN5 isoform 1, partial [Macaca
mulatta]
Length = 451
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y+ G + D AS LN G HV+D CAAPG K + ++ + G + D+
Sbjct: 188 YRAGHLILQDRASCLPAMLLNPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAK 247
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSCN 189
RLA+ TLL + + C L D S + R +LLDP SC+
Sbjct: 248 RLASMATLLARAGISC-CELAEEDFLAVSPSDPRYREVHYILLDP-SCS 294
>gi|309803987|ref|ZP_07698069.1| NOL1/NOP2/sun family protein [Lactobacillus iners LactinV 11V1-d]
gi|308163906|gb|EFO66171.1| NOL1/NOP2/sun family protein [Lactobacillus iners LactinV 11V1-d]
Length = 469
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ + +I G++VLDLCAAPG K +I + + G + +++ R
Sbjct: 77 GYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLKNEGVLVANEISSKRAK 136
Query: 150 ACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD------PGSCNSVLQEKDDTFREWT 203
R L+K+ G + + + + D P S + ++ DD + W+
Sbjct: 137 ELRENLEKW--GTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGEGMFRKSDDAIKYWS 194
Query: 204 S 204
Sbjct: 195 Q 195
>gi|309809849|ref|ZP_07703699.1| NOL1/NOP2/sun family protein [Lactobacillus iners SPIN 2503V10-D]
gi|308169801|gb|EFO71844.1| NOL1/NOP2/sun family protein [Lactobacillus iners SPIN 2503V10-D]
Length = 469
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ + +I G++VLDLCAAPG K +I + + G + +++ R
Sbjct: 77 GYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLKNEGVLVANEISSKRAK 136
Query: 150 ACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD------PGSCNSVLQEKDDTFREWT 203
R L+K+ G + + + + D P S + ++ DD + W+
Sbjct: 137 ELRENLEKW--GTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGEGMFRKSDDAIKYWS 194
>gi|406986686|gb|EKE07221.1| hypothetical protein ACD_18C00151G0002 [uncultured bacterium]
Length = 294
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 30 SVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSL--PPDIKIATSMAY 87
+ + A +T R LK + ++ +I + K+++VVW S + L ++ + +
Sbjct: 2 ATFKARPTTFRVNTLK-NDRVEVLQILQQKGFKVKRVVWFSDAFILENKSQSELMKTDLF 60
Query: 88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHR 147
GKIY AS V L+ GD VLDL +APG+K I ++ +G + ++ + R
Sbjct: 61 VDGKIYLQSLASMVPVIVLDPKVGDKVLDLTSAPGSKTSQIAMMMKKTGEIIANEIDQIR 120
Query: 148 L 148
Sbjct: 121 F 121
>gi|325290449|ref|YP_004266630.1| sun protein [Syntrophobotulus glycolicus DSM 8271]
gi|324965850|gb|ADY56629.1| sun protein [Syntrophobotulus glycolicus DSM 8271]
Length = 461
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%)
Query: 85 MAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVA 144
++Y++G D +S L + G+ VLD+C APG K + ++ + G++ G D+
Sbjct: 238 LSYQEGLFTVQDESSQLVAHILGVKPGERVLDVCCAPGGKTTHLAQLMNNQGTIIGNDLY 297
Query: 145 RHRLAACRTLLQKYALG 161
+L+ L+++ +G
Sbjct: 298 PAKLSLVNELVERLGIG 314
>gi|312871742|ref|ZP_07731830.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 3008A-a]
gi|311092684|gb|EFQ51040.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 3008A-a]
Length = 469
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ + +I G++VLDLCAAPG K +I + + G + +++ R
Sbjct: 77 GYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLKNEGVLVANEISSKRAK 136
Query: 150 ACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD------PGSCNSVLQEKDDTFREWT 203
R L+K+ G + + + + D P S + ++ DD + W+
Sbjct: 137 ELRENLEKW--GTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGEGMFRKSDDAIKYWS 194
>gi|88860599|ref|ZP_01135236.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Pseudoalteromonas
tunicata D2]
gi|88817194|gb|EAR27012.1| 16S rRNA m5C967 methyltransferase,
S-adenosyl-L-methionine-dependent [Pseudoalteromonas
tunicata D2]
Length = 429
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 19/129 (14%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G D A+ A + AG+ +LD CAAPG K C IL+ + D+ +VT +D
Sbjct: 221 FAEGACSVQDGAAQIAARLMAPQAGERILDACAAPGGKTCHILE-LADNLAVTALDCDET 279
Query: 147 RLAACRTLLQKYALGDRCRLFVADGT---------TFSLAPLRLLLD-PGSCNSVLQEKD 196
RLA + L + +G + +L AD TF ++LLD P S V++
Sbjct: 280 RLARVQENLSR--IGLQAQLLCADAANPDTWWDKETFD----KILLDVPCSATGVIRRHP 333
Query: 197 DTFREWTSR 205
D +W R
Sbjct: 334 DI--KWLRR 340
>gi|397690734|ref|YP_006527988.1| Ribosomal RNA small subunit methyltransferase B [Melioribacter
roseus P3M]
gi|395812226|gb|AFN74975.1| Ribosomal RNA small subunit methyltransferase B [Melioribacter
roseus P3M]
Length = 457
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Query: 34 AADSTPRYIRLKTGN----EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQ 89
AA+++ + L+ N +L+++ E++ + L F L + I +K
Sbjct: 187 AANNSKPVLALRVNNLVTTMEELKKLLDEVELRYTDSKLLPEFIRLNNLVNITDWKYFKL 246
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G D ++G V L G VLDLCAAPG K I D++ + G + +D RL
Sbjct: 247 GYFTVQDESTGLPVKLLKPEPGMRVLDLCAAPGGKSAFIADMMKNEGEIVALDRFDSRLK 306
Query: 150 ACRTLLQK 157
L++
Sbjct: 307 ILEKNLER 314
>gi|349611453|ref|ZP_08890688.1| hypothetical protein HMPREF1027_00115 [Lactobacillus sp. 7_1_47FAA]
gi|348608546|gb|EGY58526.1| hypothetical protein HMPREF1027_00115 [Lactobacillus sp. 7_1_47FAA]
Length = 469
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ + +I G++VLDLCAAPG K +I + + G + +++ R
Sbjct: 77 GYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLKNEGVLVANEISSKRAK 136
Query: 150 ACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD------PGSCNSVLQEKDDTFREWT 203
R L+K+ G + + + + D P S + ++ DD + W+
Sbjct: 137 ELRENLEKW--GTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGEGMFRKSDDAIKYWS 194
Query: 204 S 204
Sbjct: 195 Q 195
>gi|281203041|gb|EFA77242.1| NOL1/NOP2/Sun family protein [Polysphondylium pallidum PN500]
Length = 403
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 5/119 (4%)
Query: 35 ADSTPRYIRLKTGN----EADLEEIEAELKCKLEKVVWLS-GFYSLPPDIKIATSMAYKQ 89
A+ T R + ++T DL ++ + LE + W G + I + Y
Sbjct: 30 ANETQRPLTIRTNTLKTKRKDLADVLSTRGVHLEPIKWSQVGLTIYDSQVAIGATPEYLA 89
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRL 148
G A+S V AL G+ VLD+CA+PG K I ++ ++G + D+ + R+
Sbjct: 90 GHYIQQSASSFLPVLALEPQPGERVLDMCASPGGKTTYIASLMKNTGVLVANDINKERM 148
>gi|251796173|ref|YP_003010904.1| tRNA (cytosine-5-)-methyltransferase [Paenibacillus sp. JDR-2]
gi|247543799|gb|ACT00818.1| tRNA (cytosine-5-)-methyltransferase [Paenibacillus sp. JDR-2]
Length = 534
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 10/123 (8%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y G Y + ++ A V L++ G VLDLCAAPG K I + SG + D AR
Sbjct: 82 YHAGLYYIQEPSAMAPVELLDVHPGHRVLDLCAAPGGKSTQIAAKLQGSGVLVSNDNARE 141
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTF 199
R + L + L V + +LAP+ R+L+D P S + ++ +
Sbjct: 142 R---TKALAKNIELAGVRNAVVLNEEPSALAPVFRGWFDRILVDAPCSGEGMFRKDESMI 198
Query: 200 REW 202
EW
Sbjct: 199 AEW 201
>gi|158296526|ref|XP_554918.3| AGAP008523-PA [Anopheles gambiae str. PEST]
gi|157014752|gb|EAL39544.3| AGAP008523-PA [Anopheles gambiae str. PEST]
Length = 511
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
+ D AS ALN+ GD VLD CAAPG K ++L + G++ D+ R R
Sbjct: 281 FLFDGASCLPPLALNVQPGDRVLDACAAPGGKSLLLLQTL-HPGTMVMNDLQESRCNRIR 339
Query: 153 TLLQKYALG-------DRCRLFVADGTTFSLAPL--RLLLDPGSCN---SVLQEKDDTFR 200
L+++Y RC + +D + R+L+D N SV++ ++ F+
Sbjct: 340 QLMRQYLYDFDEKWKQKRCFITQSDARNLQEHSMYDRVLVDVPCTNDRHSVMENDNNIFK 399
Query: 201 EWTSRIPWKERKR 213
SR+ KER R
Sbjct: 400 --PSRV--KERLR 408
>gi|335429783|ref|ZP_08556681.1| 16S rRNA methyltransferase B [Haloplasma contractile SSD-17B]
gi|334889793|gb|EGM28078.1| 16S rRNA methyltransferase B [Haloplasma contractile SSD-17B]
Length = 439
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I TS+ Y G + D +S L+ S D VLD CAAPG K I +++ +SGSV+
Sbjct: 220 IGTSL-YTDGYLTIQDFSSMLVAKILDPSESDDVLDTCAAPGGKTTHIAELMSNSGSVSA 278
Query: 141 VDVARHRL 148
D+ H++
Sbjct: 279 CDIYDHKI 286
>gi|325283419|ref|YP_004255960.1| NusB/RsmB/TIM44 [Deinococcus proteolyticus MRP]
gi|324315228|gb|ADY26343.1| NusB/RsmB/TIM44 [Deinococcus proteolyticus MRP]
Length = 418
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 39 PRYIRLKTGNEA-DLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDA 97
P+ + L G + DL E E L +E+ V +G ++ D + + AY+QG+ ++
Sbjct: 168 PQPLWLHLGQQGPDLLESEGSL---IERTV--AGIDAVTLDRPLRQTAAYRQGQAQPVNP 222
Query: 98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157
AS A V+AL G V DL G K ++ D VT V++ H+ AA R+ L++
Sbjct: 223 ASAAVVTALGEVRGQKVYDLAGGAGIKAALLALAGAD---VTSVELQPHKHAAARSNLKR 279
Query: 158 YALGDRCRLFVADGT-TFSLAPLRLLLDPGSCN 189
L R RL D T AP L+L C
Sbjct: 280 --LHARARLITHDLTRPLDAAPASLVLLDAPCT 310
>gi|432928676|ref|XP_004081173.1| PREDICTED: putative methyltransferase NSUN6-like isoform 2 [Oryzias
latipes]
Length = 466
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
L G+ +LD+CAAPG K C I ++GD G V +D R+++A R
Sbjct: 239 LGPRPGERILDMCAAPGGKTCHIAALMGDQGEVVALDRIRNKIARIR 285
>gi|315653560|ref|ZP_07906480.1| NOL1/NOP2/sun family protein [Lactobacillus iners ATCC 55195]
gi|315488922|gb|EFU78564.1| NOL1/NOP2/sun family protein [Lactobacillus iners ATCC 55195]
Length = 469
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ + +I G++VLDLCAAPG K +I + + G + +++ R
Sbjct: 77 GYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLKNEGVLVANEISSKRAK 136
Query: 150 ACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD------PGSCNSVLQEKDDTFREWT 203
R L+K+ G + + + + D P S + ++ DD + W+
Sbjct: 137 ELRENLEKW--GTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGEGMFRKSDDAIKYWS 194
Query: 204 S 204
Sbjct: 195 Q 195
>gi|402854415|ref|XP_003891865.1| PREDICTED: putative methyltransferase NSUN4 [Papio anubis]
Length = 384
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
Y +DAAS V AL + GD VLDLCAAPG K +L G ++ D++ R+A +
Sbjct: 156 YLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQ-TGCCRNLAANDLSTSRIARLQ 214
Query: 153 TLLQKYAL-----GDRCRLFVADG 171
+L Y G+R R+ DG
Sbjct: 215 KILHSYVPQEIRDGNRVRVTSWDG 238
>gi|298160849|gb|EFI01866.1| Ribosomal RNA small subunit methyltransferase B [Pseudomonas
savastanoi pv. savastanoi NCPPB 3335]
Length = 441
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L ++ G VLD C APG K C +L++ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVA---------DGTTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL R L + LG L A DG F R+LLD P S V++
Sbjct: 280 RLVRVRENLDR--LGLDAELIAADARETAQWWDGKPFQ----RILLDAPCSATGVIRRHP 333
Query: 197 D 197
D
Sbjct: 334 D 334
>gi|259909968|ref|YP_002650324.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96]
gi|224965590|emb|CAX57122.1| 16S rRNA methyltransferase B [Erwinia pyrifoliae Ep1/96]
Length = 429
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 59/139 (42%), Gaps = 25/139 (17%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ QG + DA++ V+ L G+ +LDLCAAPG K IL+ V VDV
Sbjct: 223 FDQGWVTVQDASAQGCVALLAPRDGEQILDLCAAPGGKTTHILE-AAPQAKVLAVDVDAQ 281
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTT---------FSLAPLRLLLD-PGSCNSVLQEKD 196
RLA LQ+ L +L DG T F R+LLD P S V++
Sbjct: 282 RLARISENLQRLNLHAEVKL--GDGRTPAAWCGDRLFD----RILLDAPCSATGVIRRHP 335
Query: 197 DTFREWTSRIPWKERKRAV 215
D I W R R +
Sbjct: 336 D--------IKWLRRDRDI 346
>gi|432928674|ref|XP_004081172.1| PREDICTED: putative methyltransferase NSUN6-like isoform 1 [Oryzias
latipes]
Length = 459
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
L G+ +LD+CAAPG K C I ++GD G V +D R+++A R
Sbjct: 232 LGPRPGERILDMCAAPGGKTCHIAALMGDQGEVVALDRIRNKIARIR 278
>gi|309805044|ref|ZP_07699100.1| NOL1/NOP2/sun family protein [Lactobacillus iners LactinV 09V1-c]
gi|308165635|gb|EFO67862.1| NOL1/NOP2/sun family protein [Lactobacillus iners LactinV 09V1-c]
Length = 246
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ + +I G++VLDLCAAPG K +I + + G + +++ R
Sbjct: 77 GYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLKNEGVLVANEISSKRAK 136
Query: 150 ACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD------PGSCNSVLQEKDDTFREWT 203
R L+K+ G + + + + D P S + ++ DD + W+
Sbjct: 137 ELRENLEKW--GTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGEGMFRKSDDAIKYWS 194
>gi|448298241|ref|ZP_21488271.1| RNA methylase [Natronorubrum tibetense GA33]
gi|445591782|gb|ELY45979.1| RNA methylase [Natronorubrum tibetense GA33]
Length = 303
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 69/171 (40%), Gaps = 10/171 (5%)
Query: 40 RYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAAS 99
R +K E LE ++ E E+ W L D +T ++ G +G + S
Sbjct: 30 RVNTIKASVERTLETLD-EDGVTYEQANWNPRVLRLETDSPGSTWTSF-HGFTHGQEEVS 87
Query: 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159
L+ G+ V D CAAPG K I ++ D G+V D R++A R ++
Sbjct: 88 AVPPVVLDPQPGERVWDCCAAPGGKATQIAALMDDRGTVVANDNNLGRISALRFNAERLG 147
Query: 160 LGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKDDTFREWT 203
+ V D +SL R L+D P SC +++ D W+
Sbjct: 148 -ATSLAVTVDDARNYSLKRFPFDEFDRTLVDAPCSCEGTIRKNPDALDNWS 197
>gi|424069921|ref|ZP_17807363.1| sun protein [Pseudomonas syringae pv. avellanae str. ISPaVe037]
gi|443640744|ref|ZP_21124594.1| 16S rRNA SAM-dependent methyltransferase B [Pseudomonas syringae
pv. syringae B64]
gi|408001645|gb|EKG41940.1| sun protein [Pseudomonas syringae pv. avellanae str. ISPaVe037]
gi|443280761|gb|ELS39766.1| 16S rRNA SAM-dependent methyltransferase B [Pseudomonas syringae
pv. syringae B64]
Length = 441
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L ++ G VLD C APG K C +L++ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVA---------DGTTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL R L + LG L A DG F R+LLD P S V++
Sbjct: 280 RLVRVRENLDR--LGLDAELIAADARETAQWWDGKPFQ----RILLDAPCSATGVIRRHP 333
Query: 197 D 197
D
Sbjct: 334 D 334
>gi|331674796|ref|ZP_08375553.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA280]
gi|432604113|ref|ZP_19840343.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE66]
gi|331067705|gb|EGI39103.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
TA280]
gi|431137493|gb|ELE39338.1| ribosomal RNA small subunit methyltransferase B [Escherichia coli
KTE66]
Length = 429
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ +S L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMSWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEK 195
RL+ L++ LG + + DG F R+LLD P S V++
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFD----RILLDAPCSATGVIRRH 334
Query: 196 DDTFREWTSRIPWKERKRAV 215
D I W R R +
Sbjct: 335 PD--------IKWLRRDRDI 346
>gi|303388173|ref|XP_003072321.1| NOL1/NOL2/sun tRNA/rRNA cytosine-C5-methylase [Encephalitozoon
intestinalis ATCC 50506]
gi|303301460|gb|ADM10961.1| NOL1/NOL2/sun tRNA/rRNA cytosine-C5-methylase [Encephalitozoon
intestinalis ATCC 50506]
Length = 306
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 70 SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
SG + I + Y G AAS V + + G V+DLCAAPG K I
Sbjct: 67 SGCVIFKSSVPIGATPEYLAGYYCLQGAASMLPVLNMELKEGLTVVDLCAAPGGKTTHIA 126
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL-RLLLDPGSC 188
++ ++G++ D+ R+A ++ +Q+ + + C + DG ++ + R+L+D
Sbjct: 127 ALMENTGTIYANDMNEERIAGLKSNVQRMGVKN-CIIMNMDGRKVNVGKVDRVLVDAPCS 185
Query: 189 NSVLQEKDDTFREWTSR 205
+ + KD + + +R
Sbjct: 186 GTGVISKDPSVKTNRTR 202
>gi|238783195|ref|ZP_04627221.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
bercovieri ATCC 43970]
gi|238715991|gb|EEQ07977.1| Ribosomal RNA small subunit methyltransferase B [Yersinia
bercovieri ATCC 43970]
Length = 431
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 19/129 (14%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
++ G + DA++ V L+ G+ +LDLCAAPG K IL+ V VD+
Sbjct: 223 FELGWVTVQDASAQGCVELLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQ 281
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTT---------FSLAPLRLLLD-PGSCNSVLQEKD 196
RL+ + LQ+ L R V DG T F R+LLD P S V++
Sbjct: 282 RLSRVKENLQRLQLHAVVR--VGDGRTPEAWCGDQQFD----RILLDAPCSATGVIRRHP 335
Query: 197 DTFREWTSR 205
D +W R
Sbjct: 336 DI--KWLRR 342
>gi|71027761|ref|XP_763524.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350477|gb|EAN31241.1| hypothetical protein, conserved [Theileria parva]
Length = 365
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%)
Query: 78 DIKIATSMAYKQGKIYGIDAASGAAVSALNI-----SAGDHVLDLCAAPGAKLCMILD-- 130
D+++ ++ YGIDA+S A V +L + S +LD+C APG KL +D
Sbjct: 76 DVEVYNTIGNIPSSCYGIDASSAAVVDSLRLRKLSGSEEAWILDMCCAPGGKLFATIDSA 135
Query: 131 --IIGDSG-SVTGVDVARHRLAACRTLLQK 157
I D+ ++ G+D + R+ C+ +L+K
Sbjct: 136 DKINSDTKWNIIGLDSSIRRIELCKAMLRK 165
>gi|238752659|ref|ZP_04614130.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei
ATCC 43380]
gi|238709086|gb|EEQ01333.1| Ribosomal RNA small subunit methyltransferase B [Yersinia rohdei
ATCC 43380]
Length = 429
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 83/205 (40%), Gaps = 34/205 (16%)
Query: 15 PEAFLDFLKENGLDPSVY----SAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLS 70
P+ + L+ N P ++ S Y+ L +AD+E + ++ +++
Sbjct: 158 PDQWQQILEANNQKPPMWLRVSRLHHSRSEYLELL--KQADIEALPHDVYPDAVRLITPC 215
Query: 71 GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
LP + G + DA++ V L+ G+ +LDLCAAPG K IL+
Sbjct: 216 SVNDLP---------GFDLGWVTVQDASAQGCVDLLSPQNGEQILDLCAAPGGKTTHILE 266
Query: 131 IIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT---------FSLAPLRL 181
V VD+ RL+ + LQ+ L R V DG T F R+
Sbjct: 267 -AAPKAHVLAVDIDEQRLSRVKENLQRLKLHADVR--VGDGRTPDEWCGNQQFD----RI 319
Query: 182 LLD-PGSCNSVLQEKDDTFREWTSR 205
LLD P S V++ D +W R
Sbjct: 320 LLDAPCSATGVIRRHPDI--KWLRR 342
>gi|402863192|ref|XP_003895915.1| PREDICTED: putative methyltransferase NSUN5 [Papio anubis]
Length = 470
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y+ G + D AS LN G HV+D CAAPG K + ++ + G + D+
Sbjct: 203 YRAGHLILQDRASCLPAMLLNPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAK 262
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSCN 189
RLA+ TLL + + C L D S + R +LLDP SC+
Sbjct: 263 RLASMATLLARAGISC-CELAEEDFLAVSPSDPRYREVHYILLDP-SCS 309
>gi|312872920|ref|ZP_07732980.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 2062A-h1]
gi|311091442|gb|EFQ49826.1| NOL1/NOP2/sun family protein [Lactobacillus iners LEAF 2062A-h1]
Length = 469
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 8/121 (6%)
Query: 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149
G +Y D ++ + +I G++VLDLCAAPG K +I + + G + +++ R
Sbjct: 77 GYVYSQDPSAMYPATIADIKPGEYVLDLCAAPGGKSTIIASKLKNEGVLVANEISSKRAK 136
Query: 150 ACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD------PGSCNSVLQEKDDTFREWT 203
R L+K+ G + + + + D P S + ++ DD + W+
Sbjct: 137 ELRENLEKW--GTSNVIITNESPERLVKKFKNFFDTIIVDAPCSGEGMFRKSDDAIKYWS 194
Query: 204 S 204
Sbjct: 195 Q 195
>gi|448330992|ref|ZP_21520266.1| RNA methylase, NOL1/NOP2/sun family protein [Natrinema versiforme
JCM 10478]
gi|445610116|gb|ELY63891.1| RNA methylase, NOL1/NOP2/sun family protein [Natrinema versiforme
JCM 10478]
Length = 302
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 61/147 (41%), Gaps = 9/147 (6%)
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGA 123
E+ W S L D +T ++ G +G + S L+ G+ V D CAAPG
Sbjct: 53 EQADWNSRVLDLETDSPGSTWTSF-HGFTHGQEEVSAVPPVVLDPEPGERVWDCCAAPGG 111
Query: 124 KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL---- 179
K I ++ D G+V D R++A R ++ + AD +SL
Sbjct: 112 KATQIAALMDDRGTVVANDNNLGRISALRFNAERLG-ATSLAVTNADARNYSLERFEFDE 170
Query: 180 --RLLLD-PGSCNSVLQEKDDTFREWT 203
R L+D P SC +++ D W+
Sbjct: 171 FDRTLVDAPCSCEGTIRKNPDALDNWS 197
>gi|355747584|gb|EHH52081.1| hypothetical protein EGM_12451 [Macaca fascicularis]
Length = 470
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y+ G + D AS LN G HV+D CAAPG K + ++ + G + D+
Sbjct: 203 YRAGHLILQDRASCLPAMLLNPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAK 262
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSCN 189
RLA+ TLL + + C L D S + R +LLDP SC+
Sbjct: 263 RLASMATLLARAGISC-CELAEEDFLAVSPSDPRYREVHYILLDP-SCS 309
>gi|170028291|ref|XP_001842029.1| Nop2p [Culex quinquefasciatus]
gi|167874184|gb|EDS37567.1| Nop2p [Culex quinquefasciatus]
Length = 492
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 17/131 (12%)
Query: 95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL 154
+D AS AL++ GD VLD CAAPG K ++L + G++ DV R+ R L
Sbjct: 264 LDGASILPALALDVQPGDRVLDACAAPGGKSLLLLQTL-RPGTLVCNDVQESRVNRIRKL 322
Query: 155 LQKY-----ALGDRCRLFVADGTTFSLAPL----RLLLD-PGSCN--SVLQEKDDTFREW 202
+ Y A + R F+ G +L R+L+D P + + SV++ ++ F+
Sbjct: 323 MGSYLYDFSANWKQKRCFITHGDARNLTEYDMYDRILVDVPCTTDRHSVMENDNNIFK-- 380
Query: 203 TSRIPWKERKR 213
+SR+ KER R
Sbjct: 381 SSRV--KERLR 389
>gi|433454201|ref|ZP_20413052.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma sp.
G5847]
gi|431933444|gb|ELK20031.1| ribosomal RNA small subunit methyltransferase B [Mycoplasma sp.
G5847]
Length = 419
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
I S YK G I D AS LN S VLD+C+APG KL + I+ ++GS+ G
Sbjct: 214 IINSDLYKNGLITIQDKASILVSQILNPSLNTKVLDMCSAPGGKLTHLSMIMNNTGSIIG 273
Query: 141 VDVARHRLAACR 152
+++ ++ +
Sbjct: 274 NELSESKIRLIK 285
>gi|420156807|ref|ZP_14663647.1| NOL1/NOP2/sun family protein [Clostridium sp. MSTE9]
gi|394756817|gb|EJF39876.1| NOL1/NOP2/sun family protein [Clostridium sp. MSTE9]
Length = 445
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%)
Query: 56 EAELKCKLEKVVWLSGF----YSLPPDIKIATSMA-YKQGKIYGIDAASGAAVSALNISA 110
E LK L+ + +S F Y +P D S+ + G Y + ++ +AV+ L+
Sbjct: 44 EKTLKNALDFPIEISPFSPYSYYIPEDADKPGSIPLHHAGAFYSQEPSAASAVTILSPQP 103
Query: 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
G+ +LDLCAAPG K I ++ G + +V R R A + L++ + +
Sbjct: 104 GEKILDLCAAPGGKSTQIAALLAGRGLLWSNEVVRSRAMALLSNLERMGVSN 155
>gi|296131699|ref|YP_003638946.1| RNA methylase [Thermincola potens JR]
gi|296030277|gb|ADG81045.1| RNA methylase, NOL1/NOP2/sun family [Thermincola potens JR]
Length = 460
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 63 LEKVVWLS-GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAP 121
L V W GFY PD + + G Y + ++ A V L G+ +LDLCAAP
Sbjct: 56 LRPVPWCRLGFY-YSPDDRPGKHPYHAAGLYYIQEPSAMAVVEILQPQPGERILDLCAAP 114
Query: 122 GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159
G K I +G +G + ++ +R+ A L+++
Sbjct: 115 GGKSTHIYSYLGHTGLLVANEINANRVKALAENLERWG 152
>gi|153809822|ref|ZP_01962490.1| hypothetical protein RUMOBE_00203 [Ruminococcus obeum ATCC 29174]
gi|149834000|gb|EDM89080.1| ribosomal RNA small subunit methyltransferase B [Ruminococcus obeum
ATCC 29174]
Length = 450
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
A+ QGK+ D +S N GD+V+D+CAAPG K I D + G+V D+++
Sbjct: 233 AFIQGKMVVQDVSSMLVAEIANPQKGDYVIDMCAAPGGKSLHIGDKMEGFGTVDARDISQ 292
Query: 146 HRLAACRTLLQK 157
+++ +Q+
Sbjct: 293 YKVNLIEENIQR 304
>gi|385786294|ref|YP_005817403.1| Ribosomal RNA small subunit methyltransferase B [Erwinia sp.
Ejp617]
gi|310765566|gb|ADP10516.1| Ribosomal RNA small subunit methyltransferase B [Erwinia sp.
Ejp617]
Length = 441
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 59/139 (42%), Gaps = 25/139 (17%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ QG + DA++ V+ L G+ +LDLCAAPG K IL+ V VDV
Sbjct: 235 FDQGWVTVQDASAQGCVALLAPRDGEQILDLCAAPGGKTTHILE-AAPQAKVLAVDVDAQ 293
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTT---------FSLAPLRLLLD-PGSCNSVLQEKD 196
RLA LQ+ L +L DG T F R+LLD P S V++
Sbjct: 294 RLARISENLQRLNLHAEVKL--GDGRTPAAWCGDRLFD----RILLDAPCSATGVIRRHP 347
Query: 197 DTFREWTSRIPWKERKRAV 215
D I W R R +
Sbjct: 348 D--------IKWLRRDRDI 358
>gi|358255548|dbj|GAA57237.1| putative methyltransferase NSUN4, partial [Clonorchis sinensis]
Length = 1435
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 59 LKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLC 118
L+ K K L G++ + A Q Y ID S V ALN++ GD +LDLC
Sbjct: 1163 LRVKCPKYGKLGGYHK--------PTFANGQFDFYPIDLGSVLVVLALNLNPGDTLLDLC 1214
Query: 119 AAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
AAPG K L + V VD + RL + +L + L D
Sbjct: 1215 AAPGGKTVTALQTLKPRRLVC-VDNSLSRLQRLQHVLNTHGLVD 1257
>gi|339448375|ref|ZP_08651931.1| RNA methylase, NOL1/NOP2/sun family protein [Lactobacillus
fructivorans KCTC 3543]
Length = 447
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 71/159 (44%), Gaps = 7/159 (4%)
Query: 82 ATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGV 141
++ ++ G +Y + ++ +N + GD VLDLCAAPG K + ++ + G +
Sbjct: 66 GKTVEHQSGYVYSQEPSAMYVAEVVNPTPGDRVLDLCAAPGGKSTHLAGLMQNKGLLVSN 125
Query: 142 DVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL---RLLLD-PGSCNSVLQEKDD 197
++ R R L+++ + D L P ++L+D P S + ++ +
Sbjct: 126 EIERGRAKVLVENLERFGVFDPLILNEDPKMLSKHFPRYFDKILIDAPCSGEGMFRKNHE 185
Query: 198 TFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIF 236
+ W+ P R+ A++ +E A + +LI+
Sbjct: 186 ATKYWSKDYP---RECAIRQKEIVAEAIKMLKPGGQLIY 221
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,024,744,384
Number of Sequences: 23463169
Number of extensions: 205711223
Number of successful extensions: 582097
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2576
Number of HSP's successfully gapped in prelim test: 1681
Number of HSP's that attempted gapping in prelim test: 576203
Number of HSP's gapped (non-prelim): 7254
length of query: 313
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 171
effective length of database: 9,027,425,369
effective search space: 1543689738099
effective search space used: 1543689738099
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 76 (33.9 bits)