BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021397
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%)
Query: 83 TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVD 142
TS A+ +GKI + AS A L+ G+ V+DL AAPG K + +++ + G + D
Sbjct: 232 TSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFD 291
Query: 143 VARHRLAACRTLLQKYAL 160
V + R+ + +++ +
Sbjct: 292 VDKMRMKRLKDFVKRMGI 309
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEK 195
RL+ L++ LG + + DG F R+LLD P S V++
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFD----RILLDAPCSATGVIRRH 334
Query: 196 DDTFREWTSRIPWKERKRAV 215
D I W R R +
Sbjct: 335 PD--------IKWLRRDRDI 346
>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|C Chain C, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|D Chain D, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|F Chain F, Human Mterf4-Nsun4 Protein Complex
Length = 360
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
Y +DAAS V AL + GD VLDLCAAPG K +L G ++ D++ R+A +
Sbjct: 132 YLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQ-TGCCRNLAANDLSPSRIARLQ 190
Query: 153 TLLQKYAL-----GDRCRLFVADG 171
+L Y G++ R+ DG
Sbjct: 191 KILHSYVPEEIRDGNQVRVTSWDG 214
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y+ G + D AS L+ G HV+D CAAPG K + ++ + G + D+
Sbjct: 79 YRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAK 138
Query: 147 RLAACRTLLQK 157
RLA+ TLL +
Sbjct: 139 RLASMATLLAR 149
>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 359
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 91 KIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAA 150
+ Y DAAS V AL + GD VLDLCAAPG K +L G ++ D++ R+A
Sbjct: 129 EYYLXDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQ-TGCCRNLAANDLSPSRIAR 187
Query: 151 CRTLLQKYAL-----GDRCRLFVADG 171
+ +L Y G++ R+ DG
Sbjct: 188 LQKILHSYVPEEIRDGNQVRVTSWDG 213
>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
Length = 274
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 32/56 (57%)
Query: 105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
LN D +LD+CAAPG K + ++ + G++ V++++ R A ++ + + +
Sbjct: 78 VLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV 133
>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
Query: 62 KLEKVVWLS-GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
+ ++V W GF I ++ + G IY +A+S AL+ G+ V D AA
Sbjct: 69 QFKRVPWAKEGFCLTREPFSITSTPEFLTGLIYIQEASSXYPPVALDPKPGEIVADXAAA 128
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157
PG K + + + G + DV +RL R L +
Sbjct: 129 PGGKTSYLAQLXRNDGVIYAFDVDENRLRETRLNLSR 165
>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 23/210 (10%)
Query: 14 LPEAFLDFLKENGLDPSVYS-----AADSTP--RYIRLKTG--NEADLEEIEAELKCKLE 64
P+AFL +E PS S AA P R IR+ T + AD ++ A L
Sbjct: 8 FPDAFLTQXRE--AXPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLT 65
Query: 65 KVVWLSGFYSLPPD----IKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLC 118
+ W + + D + + ++ + G Y +A+S V+AL + +A V D+
Sbjct: 66 PIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSXLPVAALFADGNAPQRVXDVA 125
Query: 119 AAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP 178
AAPG+K I + G++ + + R+ + + + + L DG F A
Sbjct: 126 AAPGSKTTQISARXNNEGAILANEFSASRVKVLHANISRCGISN-VALTHFDGRVFGAAV 184
Query: 179 LR----LLLD-PGSCNSVLQEKDDTFREWT 203
+LLD P S V+++ D + W+
Sbjct: 185 PEXFDAILLDAPCSGEGVVRKDPDALKNWS 214
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 15/154 (9%)
Query: 63 LEKVVWLS-GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSAL-NISAGDHVLDLCAA 120
L + W GFY P+ + +Y I S AV L + G+ VLDL AA
Sbjct: 54 LRPIPWCQEGFYY--PEEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAA 111
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL------GDRCRLFVADGTTF 174
PG K + +G G + +V R+ ++++ L A GT F
Sbjct: 112 PGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYF 171
Query: 175 SLAPLRLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
R+LLD P S + ++ + R W P
Sbjct: 172 H----RVLLDAPCSGEGMFRKDREAARHWGPSAP 201
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 60/154 (38%), Gaps = 15/154 (9%)
Query: 63 LEKVVWLS-GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSAL-NISAGDHVLDLCAA 120
L + W GFY P+ + +Y I S AV L + G+ VLDL AA
Sbjct: 54 LRPIPWCQEGFYY--PEEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAA 111
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL------GDRCRLFVADGTTF 174
PG K + +G G + +V R+ ++++ L A GT F
Sbjct: 112 PGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYF 171
Query: 175 SLAPLRLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
R+LLD P S + ++ + R W P
Sbjct: 172 H----RVLLDAPCSGEGMFRKDREAARHWGPSAP 201
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 10/137 (7%)
Query: 84 SMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDV 143
S ++ G Y + ++ +A G+ VLDLCAAPG K + G + ++
Sbjct: 79 SFLHQAGYEYSQEPSAXIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQXKGKGLLVTNEI 138
Query: 144 ARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL------RLLLD-PGSCNSVLQEKD 196
R ++++ + + V + L P R+++D P S ++
Sbjct: 139 FPKRAKILSENIERWGVSNAI---VTNHAPAELVPHFSGFFDRIVVDAPCSGEGXFRKDP 195
Query: 197 DTFREWTSRIPWKERKR 213
+ +EWT P +KR
Sbjct: 196 NAIKEWTEESPLYCQKR 212
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 35.4 bits (80), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY-- 158
A A + G+ +L++ G ++ D +G SG VTG+D+A A TL Q +
Sbjct: 34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNH 93
Query: 159 ----ALGDRCRLFVADGTTFSLAPL 179
LGDR + + L P+
Sbjct: 94 LLAGPLGDRLTVHFNTNLSDDLGPI 118
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 58/154 (37%), Gaps = 15/154 (9%)
Query: 63 LEKVVWLS-GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSAL-NISAGDHVLDLCAA 120
L + W GFY P+ + +Y I S AV L + G+ VLDL AA
Sbjct: 54 LRPIPWCQEGFYY--PEEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAA 111
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL------GDRCRLFVADGTTF 174
PG K + G G + +V R+ ++++ L A GT F
Sbjct: 112 PGGKTTHLAARXGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYF 171
Query: 175 SLAPLRLLLD-PGSCNSVLQEKDDTFREWTSRIP 207
R+LLD P S ++ + R W P
Sbjct: 172 H----RVLLDAPCSGEGXFRKDREAARHWGPSAP 201
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 71 GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
G+ +P I +M + +Y D++ A + L++ GD ++D GA ++
Sbjct: 75 GYILIPSLIDEIMNMKRRTQIVYPKDSSFIAMM--LDVKEGDRIIDTGVGSGAMCAVLAR 132
Query: 131 IIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD 170
+G SG V + + L K+ L +R + V D
Sbjct: 133 AVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD 172
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Query: 91 KIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAA 150
K YG G+ + A G VLDL G + + ++G+ G V GVD+ ++L
Sbjct: 68 KFYGC----GSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEV 123
Query: 151 CRTLLQKYA 159
R ++ +A
Sbjct: 124 ARKYVEYHA 132
>pdb|4DF3|A Chain A, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
pdb|4DF3|B Chain B, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
Length = 233
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVA 144
L + GD +L L A G + DIIG G + GV+ A
Sbjct: 73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFA 111
>pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
Length = 197
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167
+ GD V+D G + ++G++G V G D+ +A L L DR L
Sbjct: 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTL- 78
Query: 168 VADG 171
+ DG
Sbjct: 79 IKDG 82
>pdb|2EWS|A Chain A, Crystal Structure Of S.Aureus Pantothenate Kinase
pdb|2EWS|B Chain B, Crystal Structure Of S.Aureus Pantothenate Kinase
Length = 287
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 14/96 (14%)
Query: 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR--------------HRL 148
++A N H LD P KL ++ ++G+ + + VAR H
Sbjct: 191 LTAANFGHVLHHLDADFTPSNKLAAVIGVVGEVVTTMAITVAREFKTENIVYIGSSFHNN 250
Query: 149 AACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD 184
A R +++ Y + C+ + + FS A L L+
Sbjct: 251 ALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 286
>pdb|2YWX|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Methanocaldococcus
Jannaschii
Length = 157
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 32/133 (24%)
Query: 1 MLCTLDGEISKLPLPEAFLDFLKENGLDPSV-YSAADSTPRYI-RLKTGNEADLEEIEAE 58
M+C + G S L + E ++ LKE G++ V ++A TP + + ++AD+ A
Sbjct: 1 MICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIAG 60
Query: 59 LKCKLEKVVW---------------LSGFYSL------PPDIKIATSMAYKQGKIYGIDA 97
L L VV L G +L PP I +AT GID
Sbjct: 61 LAAHLPGVVASLTTKPVIAVPVDAKLDGLDALLSSVQMPPGIPVAT---------VGIDR 111
Query: 98 ASGAAVSALNISA 110
AA+ AL I A
Sbjct: 112 GENAAILALEILA 124
>pdb|2VLC|A Chain A, Crystal Structure Of Natural Cinnamomin (Isoform Iii)
pdb|2VLC|B Chain B, Crystal Structure Of Natural Cinnamomin (Isoform Iii)
Length = 570
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 21 FLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELK 60
FL+E+ DP++ + T RY +G+ DLE + E +
Sbjct: 109 FLREDNPDPAIENLLPDTKRYTFPFSGSYTDLERVAGERR 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,570,057
Number of Sequences: 62578
Number of extensions: 389620
Number of successful extensions: 1083
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1053
Number of HSP's gapped (non-prelim): 34
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)