BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021397
(313 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4WF97|RSMB_ENT38 Ribosomal RNA small subunit methyltransferase B OS=Enterobacter sp.
(strain 638) GN=rsmB PE=3 SV=1
Length = 428
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 11/113 (9%)
Query: 69 LSGFY--SLPPDIKIATSM------AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAA 120
++GF + P I++A+ ++QG + DA++ ++ L GDH+LDLCAA
Sbjct: 196 MNGFTHDAYPDAIRLASPAPVQALPGFEQGWVTVQDASAQGCMTYLEPQNGDHILDLCAA 255
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173
PG K IL+ I SV VDV RL+ L++ LG + + DG T
Sbjct: 256 PGGKTTHILE-IAPKASVMAVDVDEQRLSRVYDNLKR--LGMKAEVKQGDGRT 305
>sp|Q8K4F6|NSUN5_MOUSE Putative methyltransferase NSUN5 OS=Mus musculus GN=Nsun5 PE=2 SV=2
Length = 465
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 84/229 (36%), Gaps = 33/229 (14%)
Query: 20 DFLKENGLDPSVYSAADSTPRYIRLKT--------------------GNEADLEEIEAEL 59
D L+E+ Y PR++R+ T G + LE++ A
Sbjct: 120 DLLQESSRPGQAYQ----VPRFVRVNTLKTRPEDAIDYFKRQGFSYQGRASSLEDLRALK 175
Query: 60 KCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCA 119
L P + Y+ G + D AS L+ G HV+D CA
Sbjct: 176 GQHFLLDPLLPELLVFPAQTDLHEHPLYRAGHLILQDKASCLPAMLLSPPPGSHVIDACA 235
Query: 120 APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL 179
APG K I ++ + G + D RLAA TL+ + + C L D T S +
Sbjct: 236 APGNKTSYIAALLKNQGKIFAFDQDAKRLAAMATLVARAGVSC-CELAEKDFLTVSPSDQ 294
Query: 180 R------LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAA 222
R +LLDP S + + E P KER +A+ + A
Sbjct: 295 RYSQVQYILLDPSCSGSGMLSRQ--LEEHGEGTPSKERLQALAGFQQRA 341
>sp|A1JRZ3|RSMB_YERE8 Ribosomal RNA small subunit methyltransferase B OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=rsmB PE=3 SV=1
Length = 429
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 38/211 (18%)
Query: 11 KLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLS 70
KL P+ + L N P P ++R+ + + +E +E + +E +
Sbjct: 154 KLAYPDQWQQILDANNQKP---------PMWLRVNRLHHSRIEYLELLKQANIEALP--H 202
Query: 71 GFYSLPPDIKIATSMA------YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAK 124
FY P +++ T A ++ G + DA++ V L+ G+ +LDLCAAPG K
Sbjct: 203 DFY--PDAVRLITPCAVSDLPGFELGWVTVQDASAQGCVDLLDPQDGEQILDLCAAPGGK 260
Query: 125 LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT---------FS 175
IL+ V VD+ RL+ + LQ+ L R V DG T F
Sbjct: 261 TTHILE-AAPKVHVLAVDIDEQRLSRVKENLQRLRLHADVR--VGDGRTPDEWCGDQQFD 317
Query: 176 LAPLRLLLD-PGSCNSVLQEKDDTFREWTSR 205
R+LLD P S V++ D +W R
Sbjct: 318 ----RILLDAPCSATGVIRRHPDI--KWLRR 342
>sp|Q9I7A9|RSMB_PSEAE Ribosomal RNA small subunit methyltransferase B OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rsmB PE=3 SV=1
Length = 434
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G++ D A+ A L + G VLD C APG K C +L+ + V VD+
Sbjct: 220 FAEGRVSVQDEAAQLAAEQLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVDLEES 279
Query: 147 RLAACRTLLQKYALGDRCRLFVAD----GTTFSLAPL-RLLLD-PGSCNSVLQEKDD 197
RL R LQ+ LG + L AD G + P R+LLD P S V++ D
Sbjct: 280 RLVRVRENLQR--LGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPD 334
>sp|A7N0K6|RSMF_VIBHB Ribosomal RNA small subunit methyltransferase F OS=Vibrio harveyi
(strain ATCC BAA-1116 / BB120) GN=rsmF PE=3 SV=2
Length = 478
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 93/209 (44%), Gaps = 20/209 (9%)
Query: 14 LPEAFLDFLK-----ENGLDPSVYSAADSTPRYIR---LKTGNEADLEEIEAELKCKLEK 65
+PEAFL+ ++ ++ + S + IR LK EA LE EA+ KL
Sbjct: 7 IPEAFLEKIQTILPAHLNMEDFIASCQKPLRKSIRVNTLKISVEAFLERAEAK-GWKLSP 65
Query: 66 VVWLSGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCAA 120
V W + + + D + + + + G Y +A+S VSAL N + D VLD AA
Sbjct: 66 VPWCNTGFWIEADESVVPLGNTAEHMSGLFYIQEASSMMPVSALFMNDESYDAVLDTAAA 125
Query: 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF-SLAPL 179
PG+K I ++ + G + + A R+ +++ + + L DG F P
Sbjct: 126 PGSKTTQIAALMNNEGVLVANEYAASRVKVLHANIERCGVRN-AALSNFDGRVFGGWLPE 184
Query: 180 RL---LLD-PGSCNSVLQEKDDTFREWTS 204
+ LLD P S +++ +D + WT
Sbjct: 185 QFDAVLLDAPCSGEGTVRKDEDAMKNWTQ 213
>sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus
subtilis (strain 168) GN=rsmB PE=3 SV=2
Length = 447
Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 81 IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
IA + ++ G++ D +S AL+ + + VLD CAAPG K I +++ + GSVT
Sbjct: 222 IAGTHFFQNGEVSIQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTS 281
Query: 141 VDVARHRL 148
+D+ +H++
Sbjct: 282 LDLHKHKV 289
>sp|Q9V106|TRCM_PYRAB tRNA (cytosine(49)-C(5))-methyltransferase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB06230 PE=1 SV=1
Length = 311
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 20/175 (11%)
Query: 42 IRLKTGNEADLEEIEA--ELKCKLEKVVWLSG--FYSLPPDIKIATSMAYKQGKIYGIDA 97
IR+ T + +L+EI+A E K +LE + W G FY D+ + Y G I +A
Sbjct: 39 IRINTL-KGNLKEIKALLEEKFELEPIPWTKGEGFYIKSYDVNYGQLIEYSLGLIIPQEA 97
Query: 98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHR-------LAA 150
+S L+ + +LD+ AAPG+K + + + G + D R R L
Sbjct: 98 SSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANLTR 157
Query: 151 CRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSV-LQEKDDTF-REWT 203
L+ K + D F TF R+LLD C+SV + K+ F R W+
Sbjct: 158 AGVLIAKVTVKDGA-YFARYENTFD----RVLLD-APCSSVGMIRKNFKFARTWS 206
>sp|A7MKH5|RSMF_CROS8 Ribosomal RNA small subunit methyltransferase F OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=rsmF PE=3 SV=2
Length = 480
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 103/225 (45%), Gaps = 24/225 (10%)
Query: 14 LPEAFLDFLKEN---GLDPSVYSAADSTP--RYIR---LKTGNEADLEEIEAELKCKLEK 65
LPEAFLD ++E GL + AA P R IR LK +A L ++ A +L
Sbjct: 9 LPEAFLDVMREAMPAGLAMDDFIAACQRPLRRSIRVNTLKISVDAFLAQV-APYGWQLTP 67
Query: 66 VVWL-SGFYSLPPD---IKIATSMAYKQGKIYGIDAASGAAVSALNISAGD--HVLDLCA 119
V W GF+ D + + ++ + G+ Y +A+S V+AL V+D+ A
Sbjct: 68 VPWCPEGFWIERDDEDALPLGSTAEHLSGQFYIQEASSMLPVAALFADGNTPARVMDVAA 127
Query: 120 APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA-P 178
APG+K I ++ + G + + + R+ + + + + L DG F A P
Sbjct: 128 APGSKTTQIAALMQNQGFILANEYSASRVKVLHANISRCGIHN-VGLTHFDGRVFGAALP 186
Query: 179 LR---LLLD-PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARE 219
+ +LLD P S V+++ D R W+ P +++ A RE
Sbjct: 187 EQFDAILLDAPCSGEGVVRKDPDALRNWS---PQSDQEIAATQRE 228
>sp|Q88B41|RSMB_PSESM Ribosomal RNA small subunit methyltransferase B OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=rsmB PE=3 SV=1
Length = 448
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ +G I D A+ A L ++ G VLD C APG K C +L++ V VD+
Sbjct: 220 FAEGWISVQDEAAQLAADLLELAPGQRVLDACCAPGGKTCHLLEVQPQLSGVVAVDLEAK 279
Query: 147 RLAACRTLLQKYALGDRCRLFVA---------DGTTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL R L++ LG L A DG F R+LLD P S V++
Sbjct: 280 RLVRVRENLER--LGLDAELIAADARETAQWWDGKPFQ----RILLDAPCSATGVIRRHP 333
Query: 197 D 197
D
Sbjct: 334 D 334
>sp|B7LRQ5|RSMB_ESCF3 Ribosomal RNA small subunit methyltransferase B OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rsmB PE=3 SV=1
Length = 429
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+++G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEEGWVTVQDASAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|B7NDR0|RSMB_ECOLU Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+++G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEEGWVTVQDASAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|Q3YWX1|RSMB_SHISS Ribosomal RNA small subunit methyltransferase B OS=Shigella sonnei
(strain Ss046) GN=rsmB PE=3 SV=1
Length = 429
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVHDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|B7N0S9|RSMB_ECO81 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O81 (strain ED1a) GN=rsmB PE=3 SV=1
Length = 429
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+++G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEEGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVLAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|Q8FD12|RSMB_ECOL6 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmB PE=3
SV=1
Length = 429
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+++G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEEGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVLAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|Q1R644|RSMB_ECOUT Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 25/140 (17%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+++G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEEGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVLAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEK 195
RL+ L++ LG + + DG F R+LLD P S V++
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFD----RILLDAPCSATGVIRRH 334
Query: 196 DDTFREWTSRIPWKERKRAV 215
D I W R R +
Sbjct: 335 PD--------IKWLRRDRDI 346
>sp|A1AGI0|RSMB_ECOK1 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O1:K1 / APEC GN=rsmB PE=3 SV=1
Length = 429
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 25/140 (17%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+++G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEEGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVLAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEK 195
RL+ L++ LG + + DG F R+LLD P S V++
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFD----RILLDAPCSATGVIRRH 334
Query: 196 DDTFREWTSRIPWKERKRAV 215
D I W R R +
Sbjct: 335 PD--------IKWLRRDRDI 346
>sp|B7NLK8|RSMB_ECO7I Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+++G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEEGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVLAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|B7MCQ4|RSMB_ECO45 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 25/140 (17%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+++G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEEGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVLAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEK 195
RL+ L++ LG + + DG F R+LLD P S V++
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFD----RILLDAPCSATGVIRRH 334
Query: 196 DDTFREWTSRIPWKERKRAV 215
D I W R R +
Sbjct: 335 PD--------IKWLRRDRDI 346
>sp|Q0T014|RSMB_SHIF8 Ribosomal RNA small subunit methyltransferase B OS=Shigella
flexneri serotype 5b (strain 8401) GN=rsmB PE=3 SV=2
Length = 429
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|B5YT08|RSMB_ECO5E Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|Q8XEE5|RSMB_ECO57 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O157:H7 GN=rsmB PE=3 SV=1
Length = 429
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|P36929|RSMB_ECOLI Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain K12) GN=rsmB PE=1 SV=2
Length = 429
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEK 195
RL+ L++ LG + + DG F R+LLD P S V++
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFD----RILLDAPCSATGVIRRH 334
Query: 196 DDTFREWTSRIPWKERKRAV 215
D I W R R +
Sbjct: 335 PD--------IKWLRRDRDI 346
>sp|B1IQ11|RSMB_ECOLC Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmB PE=3 SV=1
Length = 429
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEK 195
RL+ L++ LG + + DG F R+LLD P S V++
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFD----RILLDAPCSATGVIRRH 334
Query: 196 DDTFREWTSRIPWKERKRAV 215
D I W R R +
Sbjct: 335 PD--------IKWLRRDRDI 346
>sp|A8A593|RSMB_ECOHS Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O9:H4 (strain HS) GN=rsmB PE=3 SV=1
Length = 429
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEK 195
RL+ L++ LG + + DG F R+LLD P S V++
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFD----RILLDAPCSATGVIRRH 334
Query: 196 DDTFREWTSRIPWKERKRAV 215
D I W R R +
Sbjct: 335 PD--------IKWLRRDRDI 346
>sp|B1X6E1|RSMB_ECODH Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain K12 / DH10B) GN=rsmB PE=3 SV=1
Length = 429
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEK 195
RL+ L++ LG + + DG F R+LLD P S V++
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFD----RILLDAPCSATGVIRRH 334
Query: 196 DDTFREWTSRIPWKERKRAV 215
D I W R R +
Sbjct: 335 PD--------IKWLRRDRDI 346
>sp|C4ZUE3|RSMB_ECOBW Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmB PE=3 SV=1
Length = 429
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEK 195
RL+ L++ LG + + DG F R+LLD P S V++
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFD----RILLDAPCSATGVIRRH 334
Query: 196 DDTFREWTSRIPWKERKRAV 215
D I W R R +
Sbjct: 335 PD--------IKWLRRDRDI 346
>sp|Q7UBD3|RSMB_SHIFL Ribosomal RNA small subunit methyltransferase B OS=Shigella
flexneri GN=rsmB PE=3 SV=1
Length = 429
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRIYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|B1LGP5|RSMB_ECOSM Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|B6I202|RSMB_ECOSE Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain SE11) GN=rsmB PE=3 SV=1
Length = 429
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|B7M0Z4|RSMB_ECO8A Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O8 (strain IAI1) GN=rsmB PE=3 SV=1
Length = 429
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|B7LHZ0|RSMB_ECO55 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|A7ZSH7|RSMB_ECO24 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|B7UK12|RSMB_ECO27 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGKQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|Q31VY8|RSMB_SHIBS Ribosomal RNA small subunit methyltransferase B OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmB PE=3 SV=1
Length = 429
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G+H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|B1JJH6|RSMB_YERPY Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=rsmB
PE=3 SV=1
Length = 429
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 25/150 (16%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
++ G + DA++ V L+ G+ +LDLCAAPG K IL+ V VD+
Sbjct: 223 FELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQ 281
Query: 147 RLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL+ + LQ+ L R V DG F R+LLD P S V++
Sbjct: 282 RLSRVKENLQRLQLQAVVR--VGDGRAPDTWCGDQQFD----RILLDAPCSATGVIRRHP 335
Query: 197 DTFREWTSRIPWKERKRAVKARENAASKAI 226
D I W R R + S+ I
Sbjct: 336 D--------IKWLRRDRDISELAQLQSEII 357
>sp|Q664V2|RSMB_YERPS Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=rsmB
PE=3 SV=1
Length = 429
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 25/150 (16%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
++ G + DA++ V L+ G+ +LDLCAAPG K IL+ V VD+
Sbjct: 223 FELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQ 281
Query: 147 RLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL+ + LQ+ L R V DG F R+LLD P S V++
Sbjct: 282 RLSRVKENLQRLQLQAVVR--VGDGRAPDTWCGDQQFD----RILLDAPCSATGVIRRHP 335
Query: 197 DTFREWTSRIPWKERKRAVKARENAASKAI 226
D I W R R + S+ I
Sbjct: 336 D--------IKWLRRDRDISELAQLQSEII 357
>sp|A4TH21|RSMB_YERPP Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
(strain Pestoides F) GN=rsmB PE=3 SV=1
Length = 429
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 25/150 (16%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
++ G + DA++ V L+ G+ +LDLCAAPG K IL+ V VD+
Sbjct: 223 FELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQ 281
Query: 147 RLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL+ + LQ+ L R V DG F R+LLD P S V++
Sbjct: 282 RLSRVKENLQRLQLQAVVR--VGDGRAPDTWCGDQQFD----RILLDAPCSATGVIRRHP 335
Query: 197 DTFREWTSRIPWKERKRAVKARENAASKAI 226
D I W R R + S+ I
Sbjct: 336 D--------IKWLRRDRDISELAQLQSEII 357
>sp|Q1CCX4|RSMB_YERPN Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Nepal516) GN=rsmB PE=3 SV=1
Length = 429
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 25/150 (16%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
++ G + DA++ V L+ G+ +LDLCAAPG K IL+ V VD+
Sbjct: 223 FELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQ 281
Query: 147 RLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL+ + LQ+ L R V DG F R+LLD P S V++
Sbjct: 282 RLSRVKENLQRLQLQAVVR--VGDGRAPDTWCGDQQFD----RILLDAPCSATGVIRRHP 335
Query: 197 DTFREWTSRIPWKERKRAVKARENAASKAI 226
D I W R R + S+ I
Sbjct: 336 D--------IKWLRRDRDISELAQLQSEII 357
>sp|Q8ZJ81|RSMB_YERPE Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
GN=rsmB PE=3 SV=1
Length = 429
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 25/150 (16%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
++ G + DA++ V L+ G+ +LDLCAAPG K IL+ V VD+
Sbjct: 223 FELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQ 281
Query: 147 RLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL+ + LQ+ L R V DG F R+LLD P S V++
Sbjct: 282 RLSRVKENLQRLQLQAVVR--VGDGRAPDTWCGDQQFD----RILLDAPCSATGVIRRHP 335
Query: 197 DTFREWTSRIPWKERKRAVKARENAASKAI 226
D I W R R + S+ I
Sbjct: 336 D--------IKWLRRDRDISELAQLQSEII 357
>sp|B2K506|RSMB_YERPB Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=rsmB
PE=3 SV=1
Length = 429
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 25/150 (16%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
++ G + DA++ V L+ G+ +LDLCAAPG K IL+ V VD+
Sbjct: 223 FELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQ 281
Query: 147 RLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL+ + LQ+ L R V DG F R+LLD P S V++
Sbjct: 282 RLSRVKENLQRLQLQAVVR--VGDGRAPDTWCGDQQFD----RILLDAPCSATGVIRRHP 335
Query: 197 DTFREWTSRIPWKERKRAVKARENAASKAI 226
D I W R R + S+ I
Sbjct: 336 D--------IKWLRRDRDISELAQLQSEII 357
>sp|Q1C2X7|RSMB_YERPA Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Antiqua) GN=rsmB PE=3 SV=1
Length = 429
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 25/150 (16%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
++ G + DA++ V L+ G+ +LDLCAAPG K IL+ V VD+
Sbjct: 223 FELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQ 281
Query: 147 RLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL+ + LQ+ L R V DG F R+LLD P S V++
Sbjct: 282 RLSRVKENLQRLQLQAVVR--VGDGRAPDTWCGDQQFD----RILLDAPCSATGVIRRHP 335
Query: 197 DTFREWTSRIPWKERKRAVKARENAASKAI 226
D I W R R + S+ I
Sbjct: 336 D--------IKWLRRDRDISELAQLQSEII 357
>sp|A7FNK4|RSMB_YERP3 Ribosomal RNA small subunit methyltransferase B OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=rsmB PE=3 SV=1
Length = 429
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 25/150 (16%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
++ G + DA++ V L+ G+ +LDLCAAPG K IL+ V VD+
Sbjct: 223 FELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQ 281
Query: 147 RLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL+ + LQ+ L R V DG F R+LLD P S V++
Sbjct: 282 RLSRVKENLQRLQLQAVVR--VGDGRAPDTWCGDQQFD----RILLDAPCSATGVIRRHP 335
Query: 197 DTFREWTSRIPWKERKRAVKARENAASKAI 226
D I W R R + S+ I
Sbjct: 336 D--------IKWLRRDRDISELAQLQSEII 357
>sp|A9R925|RSMB_YERPG Ribosomal RNA small subunit methyltransferase B OS=Yersinia pestis
bv. Antiqua (strain Angola) GN=rsmB PE=3 SV=2
Length = 429
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 62/150 (41%), Gaps = 25/150 (16%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
++ G + DA++ V L+ G+ +LDLCAAPG K IL+ V VD+
Sbjct: 223 FELGWVTVQDASAQGCVDLLDPQNGEQILDLCAAPGGKTTHILE-AAPKAHVLAVDIDEQ 281
Query: 147 RLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEKD 196
RL+ + LQ+ L R V DG F R+LLD P S V++
Sbjct: 282 RLSRVKENLQRLQLQAVVR--VGDGRAPDTWCGDQQFD----RILLDAPCSATGVIRRHP 335
Query: 197 DTFREWTSRIPWKERKRAVKARENAASKAI 226
D I W R R + S+ I
Sbjct: 336 D--------IKWLRRDRDISELAQLQSEII 357
>sp|Q96CB9|NSUN4_HUMAN 5-methylcytosine rRNA methyltransferase NSUN4 OS=Homo sapiens
GN=NSUN4 PE=1 SV=2
Length = 384
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
Y +DAAS V AL + GD VLDLCAAPG K +L G ++ D++ R+A +
Sbjct: 156 YLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQ-TGCCRNLAANDLSPSRIARLQ 214
Query: 153 TLLQKYAL-----GDRCRLFVADG 171
+L Y G++ R+ DG
Sbjct: 215 KILHSYVPEEIRDGNQVRVTSWDG 238
>sp|A7MPE7|RSMB_CROS8 Ribosomal RNA small subunit methyltransferase B OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=rsmB PE=3 SV=1
Length = 429
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++QG + DA++ V L G+ +LDLCAAPG K IL+ SV VDV
Sbjct: 222 GFEQGWVTVQDASAQGCVELLAPQNGETILDLCAAPGGKTTHILE-AAPQASVMAVDVDA 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEK 195
R++ L++ + + + V DG T F R+LLD P S V++
Sbjct: 281 QRISRVYENLKRLKM--KADVKVGDGRFPSTWCGETQFD----RILLDAPCSATGVIRRH 334
Query: 196 DDTFREWTSR 205
D +W R
Sbjct: 335 PDI--KWLRR 342
>sp|Q32B61|RSMB_SHIDS Ribosomal RNA small subunit methyltransferase B OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rsmB PE=3 SV=1
Length = 429
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
++ G + DA++ ++ L G H+LDLCAAPG K IL++ ++ V VD+
Sbjct: 222 GFEDGWVTVQDASAQGCMTWLAPQNGKHILDLCAAPGGKTTHILEVAPEA-QVVAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|Q0TCH3|RSMB_ECOL5 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+++G + DA++ ++ L G+H+LDLCA PG K IL++ ++ V VD+
Sbjct: 222 GFEEGWVTVQDASAQGCMTWLAPQNGEHILDLCAGPGGKTTHILEVAPEA-QVLAVDIDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADGTTFS-----LAPLRLLLD-PGSCNSVLQEKDDTF 199
RL+ L++ LG + + DG S R+LLD P S V++ D
Sbjct: 281 QRLSRVYDNLKR--LGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPD-- 336
Query: 200 REWTSRIPWKERKRAV 215
I W R R +
Sbjct: 337 ------IKWLRRDRDI 346
>sp|Q96P11|NSUN5_HUMAN Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5 PE=1 SV=2
Length = 429
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
Y+ G + D AS L+ G HV+D CAAPG K + ++ + G + D+
Sbjct: 203 YRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAK 262
Query: 147 RLAACRTLLQK 157
RLA+ TLL +
Sbjct: 263 RLASMATLLAR 273
>sp|A9MN78|RSMB_SALAR Ribosomal RNA small subunit methyltransferase B OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=rsmB PE=3 SV=1
Length = 429
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 25/140 (17%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+ +G + DA++ V+ L G+H+LDLCAAPG K IL+ ++ V VDV
Sbjct: 222 GFAEGWVTVQDASAQKCVAFLAPQNGEHILDLCAAPGGKTTHILEAAPEA-DVLAVDVDE 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEK 195
RL+ L++ LG + + DG F R+LLD P S V++
Sbjct: 281 QRLSRIYDNLKR--LGMKATVKQGDGRYPAQWCDEQQFD----RILLDAPCSATGVIRRH 334
Query: 196 DDTFREWTSRIPWKERKRAV 215
D I W R R +
Sbjct: 335 PD--------IKWLRRDRDI 346
>sp|B2VK95|RSMB_ERWT9 Ribosomal RNA small subunit methyltransferase B OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=rsmB PE=3
SV=1
Length = 429
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 66/159 (41%), Gaps = 26/159 (16%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
+ QG I D ++ V+ L G+ +LDLCAAPG K IL+ V VDV
Sbjct: 222 GFDQGWITVQDVSAQGCVALLAPRDGEQILDLCAAPGGKTTHILE-AAPQAKVMAVDVDA 280
Query: 146 HRLAACRTLLQKYALGDRCRLFVADG---------TTFSLAPLRLLLD-PGSCNSVLQEK 195
RLA LQ+ + + + DG T F R+LLD P S V++
Sbjct: 281 QRLARVSENLQRLTM--QAEVKQGDGRTPAAWCGDTQFD----RILLDAPCSATGVIRRH 334
Query: 196 DDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPEL 234
D I W R R + A A + I+ + P L
Sbjct: 335 PD--------IKWLRRDRDI-AELAALQQQILDAVWPHL 364
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118,962,360
Number of Sequences: 539616
Number of extensions: 4905106
Number of successful extensions: 14994
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 103
Number of HSP's that attempted gapping in prelim test: 14678
Number of HSP's gapped (non-prelim): 418
length of query: 313
length of database: 191,569,459
effective HSP length: 117
effective length of query: 196
effective length of database: 128,434,387
effective search space: 25173139852
effective search space used: 25173139852
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)