Query 021397
Match_columns 313
No_of_seqs 394 out of 3051
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 02:37:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021397.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021397hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0144 Sun tRNA and rRNA cyto 100.0 8.2E-47 1.8E-51 357.1 23.0 238 10-267 50-306 (355)
2 PRK11933 yebU rRNA (cytosine-C 100.0 1.8E-46 3.9E-51 364.3 23.4 236 12-267 2-260 (470)
3 PRK14903 16S rRNA methyltransf 100.0 4E-44 8.6E-49 347.1 22.7 241 6-266 126-383 (431)
4 PRK14901 16S rRNA methyltransf 100.0 2E-43 4.3E-48 343.2 22.4 241 7-267 142-402 (434)
5 TIGR00563 rsmB ribosomal RNA s 100.0 4.7E-43 1E-47 340.0 22.4 242 6-267 129-386 (426)
6 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 4.3E-43 9.3E-48 322.5 17.2 214 34-267 5-237 (283)
7 PRK10901 16S rRNA methyltransf 100.0 3.7E-40 8.1E-45 319.7 23.0 239 6-266 135-389 (427)
8 PRK14902 16S rRNA methyltransf 100.0 1.2E-39 2.5E-44 317.9 22.4 240 7-267 142-397 (444)
9 PRK14904 16S rRNA methyltransf 100.0 8.4E-39 1.8E-43 311.8 22.1 238 7-267 144-395 (445)
10 KOG1122 tRNA and rRNA cytosine 100.0 3.1E-39 6.7E-44 300.0 16.2 274 7-305 130-424 (460)
11 TIGR00446 nop2p NOL1/NOP2/sun 100.0 7.1E-38 1.5E-42 285.7 19.4 205 42-267 1-217 (264)
12 KOG2198 tRNA cytosine-5-methyl 100.0 1.4E-31 3.1E-36 246.7 9.9 210 64-292 95-343 (375)
13 KOG2360 Proliferation-associat 99.9 1.1E-23 2.4E-28 194.5 11.8 209 36-263 128-358 (413)
14 COG2226 UbiE Methylase involve 99.6 3.2E-16 6.9E-21 139.8 8.5 119 99-250 40-158 (238)
15 PF01209 Ubie_methyltran: ubiE 99.5 4.6E-14 1E-18 126.5 9.9 118 101-250 38-155 (233)
16 PF12847 Methyltransf_18: Meth 99.5 4.6E-13 9.9E-18 105.6 12.1 61 110-171 1-61 (112)
17 PRK15128 23S rRNA m(5)C1962 me 99.5 4.9E-13 1.1E-17 128.5 14.2 132 84-250 197-341 (396)
18 COG1092 Predicted SAM-dependen 99.4 9.8E-13 2.1E-17 125.3 11.9 132 84-250 194-338 (393)
19 COG2242 CobL Precorrin-6B meth 99.3 1.5E-11 3.3E-16 104.9 12.1 75 97-173 21-95 (187)
20 KOG1540 Ubiquinone biosynthesi 99.3 3.9E-12 8.5E-17 112.6 8.3 132 101-267 91-229 (296)
21 PF10672 Methyltrans_SAM: S-ad 99.3 1E-11 2.2E-16 114.1 11.3 131 82-250 98-240 (286)
22 PLN02233 ubiquinone biosynthes 99.3 3.2E-11 7E-16 110.0 13.5 119 101-250 64-184 (261)
23 PRK13944 protein-L-isoaspartat 99.3 3.2E-11 6.9E-16 106.1 12.8 74 100-173 62-135 (205)
24 PRK00377 cbiT cobalt-precorrin 99.3 2.8E-11 6E-16 105.9 11.8 75 99-173 29-103 (198)
25 PRK11783 rlmL 23S rRNA m(2)G24 99.3 3.3E-11 7.1E-16 124.0 13.7 135 83-250 514-658 (702)
26 PF13847 Methyltransf_31: Meth 99.3 4.2E-11 9.1E-16 100.1 11.8 83 109-193 2-84 (152)
27 PRK13942 protein-L-isoaspartat 99.3 5.1E-11 1.1E-15 105.4 12.6 83 90-173 56-138 (212)
28 TIGR02752 MenG_heptapren 2-hep 99.3 6.9E-11 1.5E-15 105.4 13.6 92 100-194 35-126 (231)
29 PLN02244 tocopherol O-methyltr 99.3 8.5E-11 1.8E-15 111.2 13.6 92 102-197 105-201 (340)
30 PF08704 GCD14: tRNA methyltra 99.3 6.7E-11 1.5E-15 106.5 12.2 83 88-172 20-102 (247)
31 COG2519 GCD14 tRNA(1-methylade 99.2 7.6E-11 1.7E-15 104.9 11.7 89 85-173 69-157 (256)
32 TIGR00080 pimt protein-L-isoas 99.2 1.1E-10 2.5E-15 103.2 12.6 74 99-173 66-139 (215)
33 PF05175 MTS: Methyltransferas 99.2 8.4E-11 1.8E-15 100.4 10.4 75 96-172 17-91 (170)
34 PF02353 CMAS: Mycolic acid cy 99.2 1.1E-10 2.5E-15 106.9 11.3 92 98-196 50-141 (273)
35 PRK07402 precorrin-6B methylas 99.2 2E-10 4.3E-15 100.2 11.8 82 90-173 20-101 (196)
36 PF13659 Methyltransf_26: Meth 99.2 6E-11 1.3E-15 94.3 7.7 61 111-173 1-61 (117)
37 PRK14967 putative methyltransf 99.2 3.7E-10 8.1E-15 100.5 12.9 87 90-181 14-109 (223)
38 COG4123 Predicted O-methyltran 99.2 1.6E-10 3.6E-15 103.4 10.4 86 98-184 32-127 (248)
39 PRK11873 arsM arsenite S-adeno 99.2 3.6E-10 7.8E-15 103.5 12.8 87 105-194 72-158 (272)
40 TIGR00138 gidB 16S rRNA methyl 99.1 2.9E-10 6.2E-15 98.2 10.3 63 110-174 42-104 (181)
41 PRK15451 tRNA cmo(5)U34 methyl 99.1 4.3E-10 9.4E-15 101.7 11.8 69 108-176 54-123 (247)
42 COG2230 Cfa Cyclopropane fatty 99.1 5.6E-10 1.2E-14 101.7 12.2 95 95-196 57-151 (283)
43 PF01135 PCMT: Protein-L-isoas 99.1 3.6E-10 7.7E-15 99.6 10.6 83 90-173 52-134 (209)
44 PRK04266 fibrillarin; Provisio 99.1 5.8E-10 1.3E-14 99.6 12.1 73 97-173 57-131 (226)
45 TIGR03533 L3_gln_methyl protei 99.1 4.6E-10 1E-14 103.6 11.8 72 108-180 119-196 (284)
46 COG2518 Pcm Protein-L-isoaspar 99.1 5.8E-10 1.3E-14 97.2 11.7 81 89-173 51-131 (209)
47 PRK08287 cobalt-precorrin-6Y C 99.1 7E-10 1.5E-14 96.0 12.0 78 93-172 14-91 (187)
48 TIGR00537 hemK_rel_arch HemK-r 99.1 7.9E-10 1.7E-14 95.0 12.1 79 97-180 6-89 (179)
49 PLN02781 Probable caffeoyl-CoA 99.1 8E-10 1.7E-14 99.2 12.5 77 97-173 55-131 (234)
50 PRK11207 tellurite resistance 99.1 8.4E-10 1.8E-14 96.5 12.1 88 99-193 19-106 (197)
51 PLN02476 O-methyltransferase 99.1 1.4E-09 3.1E-14 99.4 12.9 82 91-172 99-180 (278)
52 PRK00107 gidB 16S rRNA methylt 99.1 1E-09 2.2E-14 95.2 11.2 66 109-176 44-109 (187)
53 TIGR02469 CbiT precorrin-6Y C5 99.1 2.3E-09 5E-14 85.5 12.4 70 102-173 11-80 (124)
54 TIGR01177 conserved hypothetic 99.1 1.3E-09 2.9E-14 102.6 12.8 72 100-175 172-243 (329)
55 TIGR03704 PrmC_rel_meth putati 99.1 1.2E-09 2.6E-14 99.1 11.5 119 111-250 87-218 (251)
56 PRK11805 N5-glutamine S-adenos 99.1 1.4E-09 3E-14 101.5 12.2 70 111-181 134-209 (307)
57 PTZ00146 fibrillarin; Provisio 99.1 1.5E-09 3.2E-14 99.7 11.5 65 106-173 128-192 (293)
58 TIGR00740 methyltransferase, p 99.0 2.7E-09 5.9E-14 95.9 12.5 69 108-176 51-120 (239)
59 PRK00121 trmB tRNA (guanine-N( 99.0 9.2E-10 2E-14 96.6 9.1 64 110-175 40-104 (202)
60 TIGR00536 hemK_fam HemK family 99.0 3.4E-09 7.5E-14 97.8 13.0 124 111-250 115-246 (284)
61 PLN02396 hexaprenyldihydroxybe 99.0 1.2E-09 2.7E-14 102.3 10.1 86 107-197 128-213 (322)
62 PRK09489 rsmC 16S ribosomal RN 99.0 5.7E-09 1.2E-13 98.7 13.8 86 95-183 181-271 (342)
63 PRK15068 tRNA mo(5)U34 methylt 99.0 4E-09 8.7E-14 99.0 12.6 92 101-197 113-204 (322)
64 TIGR00477 tehB tellurite resis 99.0 2.6E-09 5.6E-14 93.2 10.5 85 101-193 21-105 (195)
65 PRK14103 trans-aconitate 2-met 99.0 2.5E-09 5.5E-14 97.0 10.8 86 100-197 19-104 (255)
66 TIGR00091 tRNA (guanine-N(7)-) 99.0 9.5E-10 2.1E-14 95.9 7.7 63 110-174 16-78 (194)
67 COG4122 Predicted O-methyltran 99.0 3.9E-09 8.3E-14 93.2 11.3 76 96-171 45-121 (219)
68 PRK01683 trans-aconitate 2-met 99.0 4.3E-09 9.4E-14 95.5 11.8 91 94-194 15-105 (258)
69 PRK11036 putative S-adenosyl-L 99.0 2.6E-09 5.6E-14 97.0 10.3 82 109-194 43-124 (255)
70 PRK00216 ubiE ubiquinone/menaq 99.0 7.5E-09 1.6E-13 92.1 13.2 93 100-194 41-133 (239)
71 PRK10258 biotin biosynthesis p 99.0 3.1E-09 6.6E-14 96.1 9.9 89 93-192 25-113 (251)
72 PRK08317 hypothetical protein; 99.0 1.1E-08 2.5E-13 90.6 13.3 89 102-194 11-99 (241)
73 PRK13943 protein-L-isoaspartat 99.0 9.8E-09 2.1E-13 96.2 13.1 71 102-173 72-142 (322)
74 TIGR02716 C20_methyl_CrtF C-20 99.0 1.5E-08 3.3E-13 94.4 14.3 76 98-175 137-212 (306)
75 PRK00312 pcm protein-L-isoaspa 99.0 1.3E-08 2.7E-13 89.9 13.0 80 90-173 58-137 (212)
76 PRK09328 N5-glutamine S-adenos 98.9 7.8E-09 1.7E-13 94.5 12.0 74 106-181 104-183 (275)
77 PTZ00098 phosphoethanolamine N 98.9 7.3E-09 1.6E-13 94.6 11.6 100 86-192 27-127 (263)
78 PF01596 Methyltransf_3: O-met 98.9 1.8E-09 3.9E-14 94.9 7.1 74 99-172 34-107 (205)
79 TIGR00452 methyltransferase, p 98.9 1.1E-08 2.5E-13 95.5 12.3 90 103-197 114-203 (314)
80 PF13649 Methyltransf_25: Meth 98.9 3E-09 6.5E-14 82.6 7.1 74 114-191 1-76 (101)
81 PLN02336 phosphoethanolamine N 98.9 1.1E-08 2.3E-13 101.1 12.7 92 100-197 256-347 (475)
82 PRK15001 SAM-dependent 23S rib 98.9 1.7E-08 3.6E-13 96.5 13.5 88 96-184 214-309 (378)
83 COG2227 UbiG 2-polyprenyl-3-me 98.9 1.9E-09 4.1E-14 95.4 6.4 106 109-250 58-163 (243)
84 PRK14966 unknown domain/N5-glu 98.9 1.5E-08 3.3E-13 97.3 12.8 83 97-182 237-328 (423)
85 PRK14121 tRNA (guanine-N(7)-)- 98.9 1.3E-08 2.9E-13 97.0 11.9 130 94-250 108-237 (390)
86 PRK14968 putative methyltransf 98.9 2.1E-08 4.7E-13 86.0 12.2 79 90-172 4-83 (188)
87 TIGR03534 RF_mod_PrmC protein- 98.9 1.1E-08 2.5E-13 92.0 10.9 70 110-181 87-162 (251)
88 PRK11705 cyclopropane fatty ac 98.9 1.6E-08 3.5E-13 97.1 12.4 84 100-194 157-240 (383)
89 COG0293 FtsJ 23S rRNA methylas 98.9 3.5E-09 7.7E-14 92.1 7.0 121 108-240 43-200 (205)
90 COG2890 HemK Methylase of poly 98.9 1.8E-08 3.9E-13 92.8 11.4 95 88-184 86-187 (280)
91 PRK00517 prmA ribosomal protei 98.9 2.7E-08 5.9E-13 90.1 12.0 85 86-177 97-183 (250)
92 PF08241 Methyltransf_11: Meth 98.9 7.7E-09 1.7E-13 78.2 6.9 73 115-195 1-73 (95)
93 PRK03522 rumB 23S rRNA methylu 98.8 7.8E-09 1.7E-13 96.9 8.1 66 104-173 167-232 (315)
94 smart00828 PKS_MT Methyltransf 98.8 3.1E-08 6.7E-13 87.9 11.5 81 112-196 1-81 (224)
95 PRK01544 bifunctional N5-gluta 98.8 1.7E-08 3.7E-13 100.3 10.8 73 110-183 138-216 (506)
96 COG2263 Predicted RNA methylas 98.8 1.9E-08 4.2E-13 85.9 9.5 91 88-182 21-117 (198)
97 PRK12335 tellurite resistance 98.8 3.3E-08 7.2E-13 91.4 11.7 81 105-193 115-195 (287)
98 PLN02589 caffeoyl-CoA O-methyl 98.8 3.4E-08 7.5E-13 89.1 11.3 78 95-172 64-141 (247)
99 PRK11188 rrmJ 23S rRNA methylt 98.8 3.4E-08 7.4E-13 87.2 10.9 55 108-174 49-103 (209)
100 PF03848 TehB: Tellurite resis 98.8 4.7E-08 1E-12 84.8 11.3 75 96-176 17-91 (192)
101 PF02475 Met_10: Met-10+ like- 98.8 2.8E-08 6.2E-13 86.9 9.5 67 108-175 99-165 (200)
102 COG2813 RsmC 16S RNA G1207 met 98.8 5.6E-08 1.2E-12 89.1 11.4 88 95-184 143-235 (300)
103 TIGR01934 MenG_MenH_UbiE ubiqu 98.8 8.1E-08 1.7E-12 84.5 12.0 89 101-194 30-118 (223)
104 TIGR02021 BchM-ChlM magnesium 98.8 9.4E-08 2E-12 84.7 12.4 65 108-175 53-117 (219)
105 PRK06922 hypothetical protein; 98.8 7.7E-08 1.7E-12 96.6 12.7 88 103-193 411-498 (677)
106 TIGR00406 prmA ribosomal prote 98.8 1.2E-07 2.7E-12 87.6 12.8 79 86-170 137-217 (288)
107 PRK13168 rumA 23S rRNA m(5)U19 98.7 3.7E-08 8.1E-13 96.5 9.7 67 102-172 289-355 (443)
108 PF09445 Methyltransf_15: RNA 98.7 1.7E-08 3.6E-13 85.3 6.0 58 112-172 1-58 (163)
109 PLN03075 nicotianamine synthas 98.7 1.4E-07 3E-12 87.0 12.4 65 110-174 123-189 (296)
110 TIGR02072 BioC biotin biosynth 98.7 6.1E-08 1.3E-12 86.1 9.5 94 93-194 14-110 (240)
111 TIGR00438 rrmJ cell division p 98.7 1E-07 2.2E-12 82.5 10.2 57 105-173 27-83 (188)
112 TIGR03438 probable methyltrans 98.7 2.3E-07 4.9E-12 86.4 12.5 65 109-173 62-126 (301)
113 PF05958 tRNA_U5-meth_tr: tRNA 98.7 6.5E-08 1.4E-12 92.0 8.3 68 102-174 189-256 (352)
114 PF06325 PrmA: Ribosomal prote 98.7 1.1E-07 2.4E-12 88.0 9.3 75 86-166 139-215 (295)
115 KOG2904 Predicted methyltransf 98.6 2.2E-07 4.7E-12 83.5 10.4 62 110-172 148-209 (328)
116 PLN02336 phosphoethanolamine N 98.6 3.4E-07 7.4E-12 90.4 12.9 94 95-194 22-115 (475)
117 PTZ00338 dimethyladenosine tra 98.6 1.4E-07 3.1E-12 87.4 9.6 81 92-175 18-98 (294)
118 COG2265 TrmA SAM-dependent met 98.6 1.5E-07 3.2E-12 91.5 10.0 68 102-173 285-352 (432)
119 PLN02490 MPBQ/MSBQ methyltrans 98.6 1.7E-07 3.6E-12 88.4 10.0 81 109-196 112-192 (340)
120 PHA03411 putative methyltransf 98.6 2.3E-07 5.1E-12 84.5 10.5 71 106-183 60-136 (279)
121 KOG4589 Cell division protein 98.6 2.1E-07 4.5E-12 79.3 9.4 127 108-240 67-225 (232)
122 PRK06202 hypothetical protein; 98.6 1.4E-07 3E-12 84.4 8.9 89 103-197 53-144 (232)
123 PRK00050 16S rRNA m(4)C1402 me 98.6 7.5E-08 1.6E-12 89.0 7.2 68 102-172 11-78 (296)
124 PF08242 Methyltransf_12: Meth 98.6 1.1E-08 2.5E-13 78.8 1.5 81 115-197 1-81 (99)
125 PF01170 UPF0020: Putative RNA 98.6 7.1E-07 1.5E-11 76.9 12.8 79 97-175 15-101 (179)
126 PHA03412 putative methyltransf 98.6 2.2E-07 4.7E-12 82.9 9.8 85 91-184 33-125 (241)
127 KOG1270 Methyltransferases [Co 98.6 7.3E-08 1.6E-12 86.2 6.7 83 107-197 86-173 (282)
128 TIGR00479 rumA 23S rRNA (uraci 98.6 1E-07 2.2E-12 93.1 8.4 67 102-172 284-350 (431)
129 PRK10909 rsmD 16S rRNA m(2)G96 98.6 1.2E-07 2.6E-12 83.1 7.8 71 109-182 52-130 (199)
130 PRK11088 rrmA 23S rRNA methylt 98.6 1.7E-07 3.7E-12 86.0 9.2 62 109-176 84-147 (272)
131 COG2264 PrmA Ribosomal protein 98.6 3.8E-07 8.2E-12 84.0 11.4 70 86-161 140-211 (300)
132 COG4106 Tam Trans-aconitate me 98.6 2E-07 4.4E-12 81.1 8.9 73 95-175 16-88 (257)
133 KOG2915 tRNA(1-methyladenosine 98.6 3E-07 6.5E-12 82.6 10.2 83 88-172 85-167 (314)
134 KOG1663 O-methyltransferase [S 98.6 4E-07 8.6E-12 80.1 10.6 79 94-172 57-135 (237)
135 PRK00274 ksgA 16S ribosomal RN 98.6 1.5E-07 3.3E-12 86.3 8.4 73 96-175 28-100 (272)
136 PRK05785 hypothetical protein; 98.6 2.6E-07 5.6E-12 82.6 9.4 75 110-197 51-125 (226)
137 TIGR02143 trmA_only tRNA (urac 98.6 2.7E-07 5.9E-12 87.8 9.9 58 112-173 199-256 (353)
138 PLN02672 methionine S-methyltr 98.6 3.7E-07 8E-12 96.9 11.6 91 88-180 92-210 (1082)
139 TIGR00095 RNA methyltransferas 98.6 1.9E-07 4.1E-12 81.2 7.8 60 110-171 49-108 (189)
140 smart00650 rADc Ribosomal RNA 98.6 2.9E-07 6.3E-12 78.3 8.8 69 101-175 4-72 (169)
141 PRK07580 Mg-protoporphyrin IX 98.6 8E-07 1.7E-11 78.9 11.6 79 108-194 61-139 (230)
142 PRK05134 bifunctional 3-demeth 98.6 8.1E-07 1.8E-11 79.3 11.7 91 100-196 38-128 (233)
143 PF03602 Cons_hypoth95: Conser 98.5 1.3E-07 2.8E-12 81.8 6.0 72 110-183 42-124 (183)
144 COG1041 Predicted DNA modifica 98.5 5.9E-07 1.3E-11 83.9 10.5 75 98-176 185-260 (347)
145 PRK14896 ksgA 16S ribosomal RN 98.5 4.4E-07 9.6E-12 82.6 9.4 76 94-175 13-88 (258)
146 TIGR03840 TMPT_Se_Te thiopurin 98.5 7.8E-07 1.7E-11 78.7 10.5 61 109-175 33-107 (213)
147 COG2520 Predicted methyltransf 98.5 3.8E-07 8.3E-12 85.5 8.8 91 82-176 151-252 (341)
148 TIGR02085 meth_trns_rumB 23S r 98.5 2.6E-07 5.7E-12 88.6 7.7 64 106-173 229-292 (374)
149 PRK04457 spermidine synthase; 98.5 1.2E-06 2.5E-11 80.1 11.4 63 109-172 65-127 (262)
150 PLN02585 magnesium protoporphy 98.5 4.6E-07 9.9E-12 84.8 8.8 79 110-196 144-226 (315)
151 KOG1271 Methyltransferases [Ge 98.5 5.3E-07 1.1E-11 76.6 8.2 62 112-174 69-130 (227)
152 PF02390 Methyltransf_4: Putat 98.5 4.1E-07 8.8E-12 79.5 7.8 60 112-173 19-78 (195)
153 TIGR03587 Pse_Me-ase pseudamin 98.5 3.7E-07 8.1E-12 80.3 7.6 78 107-194 40-117 (204)
154 TIGR01983 UbiG ubiquinone bios 98.5 1.1E-06 2.4E-11 77.7 10.6 79 109-192 44-122 (224)
155 smart00138 MeTrc Methyltransfe 98.5 1.2E-06 2.6E-11 80.1 10.7 84 109-194 98-215 (264)
156 COG0742 N6-adenine-specific me 98.5 1.1E-06 2.3E-11 75.6 9.6 84 98-183 29-124 (187)
157 PRK05031 tRNA (uracil-5-)-meth 98.5 5E-07 1.1E-11 86.3 8.2 59 111-173 207-265 (362)
158 PF05401 NodS: Nodulation prot 98.5 5E-07 1.1E-11 78.1 7.3 91 93-192 26-116 (201)
159 PRK04338 N(2),N(2)-dimethylgua 98.4 1.7E-06 3.8E-11 83.0 11.3 80 100-181 46-133 (382)
160 KOG2187 tRNA uracil-5-methyltr 98.4 6E-07 1.3E-11 87.1 7.5 79 102-184 375-453 (534)
161 PRK13255 thiopurine S-methyltr 98.4 3.1E-06 6.6E-11 75.2 11.5 63 107-175 34-110 (218)
162 PF13489 Methyltransf_23: Meth 98.4 1.4E-06 2.9E-11 72.5 8.5 84 98-197 9-93 (161)
163 PF01728 FtsJ: FtsJ-like methy 98.4 3.8E-08 8.3E-13 84.6 -1.7 129 110-240 23-180 (181)
164 cd02440 AdoMet_MTases S-adenos 98.4 4.4E-06 9.6E-11 62.8 9.8 60 113-175 1-60 (107)
165 TIGR00755 ksgA dimethyladenosi 98.3 2E-06 4.3E-11 78.1 8.7 73 98-176 17-89 (253)
166 KOG3191 Predicted N6-DNA-methy 98.3 1.1E-05 2.4E-10 68.6 10.7 121 111-250 44-170 (209)
167 PF08003 Methyltransf_9: Prote 98.3 1.1E-05 2.4E-10 74.2 11.5 91 102-197 107-197 (315)
168 COG0220 Predicted S-adenosylme 98.3 2.8E-06 6.1E-11 75.8 7.5 117 112-250 50-166 (227)
169 PRK11727 23S rRNA mA1618 methy 98.2 3.9E-06 8.5E-11 78.6 8.7 73 110-183 114-199 (321)
170 TIGR00308 TRM1 tRNA(guanine-26 98.2 4.9E-06 1.1E-10 79.6 8.5 69 112-181 46-122 (374)
171 COG0030 KsgA Dimethyladenosine 98.2 6E-06 1.3E-10 74.7 8.3 73 99-177 19-91 (259)
172 PRK10742 putative methyltransf 98.2 8.4E-06 1.8E-10 73.2 8.4 82 99-183 75-174 (250)
173 TIGR00417 speE spermidine synt 98.1 4.1E-05 8.8E-10 70.2 11.6 71 110-181 72-153 (270)
174 PRK00811 spermidine synthase; 98.1 3.7E-05 8E-10 71.0 11.2 63 110-173 76-142 (283)
175 KOG3420 Predicted RNA methylas 98.1 3.4E-06 7.3E-11 69.2 3.6 63 107-173 45-107 (185)
176 KOG4300 Predicted methyltransf 98.1 1.6E-05 3.4E-10 69.0 7.7 89 105-197 71-160 (252)
177 TIGR02081 metW methionine bios 98.0 1.1E-05 2.5E-10 70.0 6.6 78 109-197 12-90 (194)
178 PF02384 N6_Mtase: N-6 DNA Met 98.0 1.3E-05 2.7E-10 74.8 7.4 94 90-183 26-135 (311)
179 PF01269 Fibrillarin: Fibrilla 98.0 8.4E-05 1.8E-09 65.5 11.8 66 106-174 69-134 (229)
180 KOG1541 Predicted protein carb 98.0 2.9E-05 6.3E-10 68.0 8.4 74 90-172 28-103 (270)
181 KOG0820 Ribosomal RNA adenine 98.0 2.8E-05 6E-10 70.2 8.4 79 101-182 49-127 (315)
182 KOG1098 Putative SAM-dependent 98.0 2E-05 4.2E-10 77.9 7.6 133 108-240 42-199 (780)
183 PF03291 Pox_MCEL: mRNA cappin 98.0 3.6E-05 7.7E-10 72.6 9.2 126 98-250 46-188 (331)
184 PF07021 MetW: Methionine bios 98.0 1.4E-05 3E-10 69.0 5.7 76 108-193 11-86 (193)
185 KOG2730 Methylase [General fun 97.9 9.7E-06 2.1E-10 70.9 3.5 83 87-172 69-153 (263)
186 PF00398 RrnaAD: Ribosomal RNA 97.9 6.3E-05 1.4E-09 68.6 8.9 73 99-177 19-91 (262)
187 COG4076 Predicted RNA methylas 97.9 2.3E-05 5.1E-10 67.0 5.5 65 112-180 34-98 (252)
188 PF12147 Methyltransf_20: Puta 97.9 0.00022 4.8E-09 65.2 11.8 87 111-197 136-224 (311)
189 TIGR00006 S-adenosyl-methyltra 97.9 4.2E-05 9.1E-10 71.0 7.3 68 102-172 12-79 (305)
190 PRK01544 bifunctional N5-gluta 97.8 9.2E-05 2E-09 73.8 10.1 62 110-173 347-408 (506)
191 KOG1661 Protein-L-isoaspartate 97.8 5.9E-05 1.3E-09 65.6 7.3 72 102-173 72-155 (237)
192 PRK03612 spermidine synthase; 97.8 9.2E-05 2E-09 74.1 9.6 64 109-173 296-365 (521)
193 PF05185 PRMT5: PRMT5 arginine 97.8 0.0001 2.3E-09 72.2 9.7 66 111-176 187-255 (448)
194 COG0116 Predicted N6-adenine-s 97.8 0.00031 6.7E-09 66.8 12.4 94 82-175 157-294 (381)
195 PRK04148 hypothetical protein; 97.8 0.00012 2.6E-09 59.8 8.1 65 101-176 7-72 (134)
196 TIGR00478 tly hemolysin TlyA f 97.8 2E-05 4.4E-10 70.4 3.8 40 109-150 74-113 (228)
197 KOG2899 Predicted methyltransf 97.8 9.7E-05 2.1E-09 65.7 7.8 48 110-158 58-105 (288)
198 PRK01581 speE spermidine synth 97.7 0.00023 5.1E-09 67.5 10.6 69 111-180 151-233 (374)
199 TIGR01444 fkbM_fam methyltrans 97.7 0.00012 2.7E-09 59.9 7.4 58 113-172 1-58 (143)
200 COG2521 Predicted archaeal met 97.7 5.8E-05 1.2E-09 66.8 4.7 68 103-172 127-195 (287)
201 PLN02366 spermidine synthase 97.6 0.0004 8.6E-09 64.9 10.5 63 109-172 90-155 (308)
202 PF05219 DREV: DREV methyltran 97.6 0.0003 6.6E-09 63.4 8.8 73 110-197 94-166 (265)
203 COG1889 NOP1 Fibrillarin-like 97.6 0.00056 1.2E-08 59.3 10.0 65 106-174 72-136 (231)
204 PRK11783 rlmL 23S rRNA m(2)G24 97.6 0.00031 6.8E-09 72.8 9.9 92 82-173 155-294 (702)
205 PF00891 Methyltransf_2: O-met 97.6 0.001 2.2E-08 59.7 11.5 114 101-257 91-207 (241)
206 PF13679 Methyltransf_32: Meth 97.6 0.00031 6.7E-09 58.0 7.5 63 109-171 24-91 (141)
207 KOG1499 Protein arginine N-met 97.5 0.00051 1.1E-08 64.2 9.4 63 109-174 59-121 (346)
208 PRK13256 thiopurine S-methyltr 97.5 0.00086 1.9E-08 59.8 10.5 65 107-175 40-116 (226)
209 KOG1975 mRNA cap methyltransfe 97.5 0.00043 9.4E-09 64.0 8.4 93 98-194 107-208 (389)
210 KOG3010 Methyltransferase [Gen 97.5 0.00029 6.3E-09 62.7 6.6 51 101-154 23-74 (261)
211 PRK11760 putative 23S rRNA C24 97.5 0.00022 4.9E-09 66.8 6.2 56 108-174 209-264 (357)
212 PF02005 TRM: N2,N2-dimethylgu 97.4 0.00016 3.5E-09 69.3 5.0 72 111-182 50-130 (377)
213 COG4976 Predicted methyltransf 97.4 7.2E-05 1.6E-09 66.0 2.2 44 108-154 123-166 (287)
214 COG3963 Phospholipid N-methylt 97.4 0.0011 2.5E-08 55.8 9.0 70 100-175 38-107 (194)
215 COG0275 Predicted S-adenosylme 97.3 0.0011 2.4E-08 60.9 8.4 68 102-171 15-82 (314)
216 KOG1596 Fibrillarin and relate 97.3 0.00092 2E-08 59.5 7.4 65 107-174 153-217 (317)
217 KOG1099 SAM-dependent methyltr 97.3 0.00088 1.9E-08 59.2 7.1 35 112-146 43-85 (294)
218 PF05724 TPMT: Thiopurine S-me 97.2 0.0015 3.3E-08 58.0 7.9 67 106-175 33-110 (218)
219 PF04816 DUF633: Family of unk 97.2 0.0014 3.1E-08 57.6 7.4 59 114-173 1-59 (205)
220 PF01795 Methyltransf_5: MraW 97.1 0.0005 1.1E-08 63.9 3.9 68 102-172 12-79 (310)
221 PF13578 Methyltransf_24: Meth 97.1 0.00073 1.6E-08 52.5 4.1 57 115-172 1-59 (106)
222 PF10294 Methyltransf_16: Puta 97.0 0.0014 3.1E-08 56.0 6.1 62 108-171 43-106 (173)
223 PLN02823 spermine synthase 97.0 0.0064 1.4E-07 57.5 10.9 69 111-180 104-183 (336)
224 PF02527 GidB: rRNA small subu 97.0 0.0029 6.3E-08 54.7 7.8 59 113-173 51-109 (184)
225 KOG1253 tRNA methyltransferase 97.0 0.00044 9.5E-09 67.2 2.8 75 108-182 107-192 (525)
226 PLN02232 ubiquinone biosynthes 97.0 0.0023 4.9E-08 54.0 6.7 56 139-196 1-58 (160)
227 TIGR02987 met_A_Alw26 type II 97.0 0.0023 5.1E-08 64.1 7.8 59 111-170 32-97 (524)
228 COG0357 GidB Predicted S-adeno 96.9 0.003 6.5E-08 55.8 7.4 64 111-176 68-131 (215)
229 PF04445 SAM_MT: Putative SAM- 96.8 0.0054 1.2E-07 54.8 8.0 82 100-184 63-162 (234)
230 KOG2361 Predicted methyltransf 96.8 0.0036 7.8E-08 55.8 6.3 60 113-174 74-134 (264)
231 COG1867 TRM1 N2,N2-dimethylgua 96.7 0.0027 5.9E-08 59.9 5.7 69 111-181 53-129 (380)
232 KOG1500 Protein arginine N-met 96.7 0.005 1.1E-07 57.4 7.1 62 110-174 177-238 (517)
233 COG3897 Predicted methyltransf 96.6 0.0031 6.7E-08 54.6 4.9 59 110-172 79-137 (218)
234 PF06080 DUF938: Protein of un 96.5 0.031 6.8E-07 48.9 10.3 62 111-173 26-87 (204)
235 COG2384 Predicted SAM-dependen 96.5 0.0078 1.7E-07 53.0 6.5 62 109-171 15-76 (226)
236 KOG3115 Methyltransferase-like 96.4 0.0086 1.9E-07 52.1 6.4 61 111-173 61-128 (249)
237 TIGR03439 methyl_EasF probable 96.4 0.012 2.7E-07 55.2 7.9 63 109-172 75-142 (319)
238 PF11599 AviRa: RRNA methyltra 96.4 0.011 2.3E-07 52.0 6.8 61 96-156 34-98 (246)
239 COG0286 HsdM Type I restrictio 96.2 0.013 2.9E-07 58.2 7.1 81 90-170 166-249 (489)
240 PF08123 DOT1: Histone methyla 96.1 0.031 6.8E-07 49.1 8.6 71 102-173 34-112 (205)
241 KOG2078 tRNA modification enzy 96.1 0.0028 6E-08 60.7 1.8 64 108-174 247-311 (495)
242 PF09243 Rsm22: Mitochondrial 96.0 0.013 2.8E-07 53.9 5.9 49 111-159 34-82 (274)
243 PF01564 Spermine_synth: Sperm 96.0 0.019 4.2E-07 51.9 6.7 76 103-180 70-157 (246)
244 COG0421 SpeE Spermidine syntha 96.0 0.056 1.2E-06 49.9 9.6 80 99-180 66-156 (282)
245 KOG1501 Arginine N-methyltrans 95.9 0.016 3.5E-07 55.8 5.9 56 113-170 69-124 (636)
246 KOG1227 Putative methyltransfe 95.5 0.0076 1.6E-07 55.4 2.1 63 110-173 194-256 (351)
247 PF05971 Methyltransf_10: Prot 95.5 0.056 1.2E-06 50.2 7.6 59 111-170 103-162 (299)
248 COG4262 Predicted spermidine s 95.4 0.14 3.1E-06 48.5 10.1 71 109-180 288-372 (508)
249 KOG2671 Putative RNA methylase 95.3 0.012 2.7E-07 55.0 2.8 81 99-182 197-293 (421)
250 COG0500 SmtA SAM-dependent met 95.3 0.34 7.4E-06 37.7 11.0 58 114-173 52-109 (257)
251 PHA01634 hypothetical protein 95.3 0.052 1.1E-06 43.9 5.9 49 110-160 28-76 (156)
252 PRK10611 chemotaxis methyltran 95.1 0.068 1.5E-06 49.5 6.9 43 112-154 117-166 (287)
253 PF03141 Methyltransf_29: Puta 95.0 0.014 3.1E-07 57.2 2.3 99 113-250 120-221 (506)
254 COG1189 Predicted rRNA methyla 94.9 0.026 5.6E-07 50.4 3.6 38 110-149 79-116 (245)
255 cd00315 Cyt_C5_DNA_methylase C 94.9 0.043 9.3E-07 50.4 5.1 42 113-156 2-43 (275)
256 KOG1269 SAM-dependent methyltr 94.7 0.041 8.9E-07 52.6 4.7 71 102-174 102-172 (364)
257 PF04989 CmcI: Cephalosporin h 94.7 0.053 1.1E-06 47.6 4.9 83 90-175 11-98 (206)
258 PRK11524 putative methyltransf 94.5 0.085 1.9E-06 48.7 6.0 46 109-157 207-252 (284)
259 PF06962 rRNA_methylase: Putat 94.0 0.24 5.2E-06 40.8 7.1 40 137-176 1-40 (140)
260 PF01555 N6_N4_Mtase: DNA meth 93.7 0.12 2.5E-06 45.1 5.1 43 108-153 189-231 (231)
261 COG1352 CheR Methylase of chem 93.6 0.43 9.4E-06 43.7 8.8 43 111-153 97-147 (268)
262 PRK13699 putative methylase; P 93.5 0.2 4.3E-06 44.8 6.2 49 108-159 161-209 (227)
263 KOG0024 Sorbitol dehydrogenase 93.4 0.23 5E-06 46.4 6.6 73 83-161 142-216 (354)
264 PF05891 Methyltransf_PK: AdoM 93.0 0.35 7.5E-06 42.8 6.8 61 111-174 56-116 (218)
265 COG2933 Predicted SAM-dependen 92.9 0.17 3.6E-06 46.0 4.7 57 108-175 209-265 (358)
266 PF00145 DNA_methylase: C-5 cy 92.3 0.24 5.2E-06 45.8 5.3 53 113-175 2-54 (335)
267 PF07279 DUF1442: Protein of u 92.2 0.84 1.8E-05 40.3 8.1 77 95-171 26-105 (218)
268 PF07091 FmrO: Ribosomal RNA m 91.9 0.41 8.9E-06 43.2 6.0 61 109-172 104-164 (251)
269 PF03059 NAS: Nicotianamine sy 91.5 0.82 1.8E-05 42.1 7.7 63 112-174 122-186 (276)
270 PF01861 DUF43: Protein of unk 89.9 0.9 2E-05 40.8 6.2 87 83-173 16-103 (243)
271 KOG2651 rRNA adenine N-6-methy 89.8 1 2.3E-05 43.0 6.8 53 99-153 142-194 (476)
272 PF05050 Methyltransf_21: Meth 89.5 1.1 2.5E-05 36.7 6.4 53 116-168 1-58 (167)
273 cd08283 FDH_like_1 Glutathione 88.8 1.4 3.1E-05 42.1 7.3 50 104-154 178-228 (386)
274 PF01739 CheR: CheR methyltran 86.4 0.96 2.1E-05 39.5 4.1 43 111-153 32-82 (196)
275 TIGR00497 hsdM type I restrict 86.3 2.5 5.4E-05 42.3 7.5 73 88-160 193-270 (501)
276 KOG0821 Predicted ribosomal RN 85.8 1.6 3.4E-05 38.8 5.0 69 102-174 42-110 (326)
277 COG0270 Dcm Site-specific DNA 85.6 1.2 2.6E-05 41.9 4.6 43 112-156 4-46 (328)
278 PF04672 Methyltransf_19: S-ad 85.5 0.97 2.1E-05 41.3 3.8 64 112-176 70-135 (267)
279 KOG4058 Uncharacterized conser 85.5 1.6 3.5E-05 36.4 4.7 72 103-176 65-136 (199)
280 KOG3178 Hydroxyindole-O-methyl 85.1 6.6 0.00014 37.1 9.2 59 105-171 168-230 (342)
281 KOG3987 Uncharacterized conser 85.0 0.23 4.9E-06 43.6 -0.5 40 111-153 113-152 (288)
282 PRK10458 DNA cytosine methylas 84.2 3.1 6.8E-05 41.2 7.0 43 111-155 88-130 (467)
283 COG4798 Predicted methyltransf 84.0 1.3 2.8E-05 38.7 3.6 43 104-146 42-84 (238)
284 KOG2198 tRNA cytosine-5-methyl 83.4 0.46 1E-05 45.1 0.7 34 261-294 233-266 (375)
285 COG1064 AdhP Zn-dependent alco 83.1 3 6.4E-05 39.5 6.0 46 106-153 162-208 (339)
286 PRK00536 speE spermidine synth 83.0 6.7 0.00014 35.9 8.1 75 102-180 65-146 (262)
287 KOG2782 Putative SAM dependent 82.6 0.41 9E-06 42.3 0.1 53 102-155 35-87 (303)
288 KOG0022 Alcohol dehydrogenase, 82.5 3.6 7.8E-05 38.6 6.2 56 102-161 184-239 (375)
289 PF11899 DUF3419: Protein of u 82.4 3 6.6E-05 40.2 6.0 62 88-152 12-74 (380)
290 TIGR00675 dcm DNA-methyltransf 82.0 2.3 5E-05 39.8 4.9 40 114-155 1-40 (315)
291 COG1062 AdhC Zn-dependent alco 81.2 4.7 0.0001 38.1 6.5 57 101-161 176-232 (366)
292 KOG0822 Protein kinase inhibit 79.8 4.8 0.0001 40.2 6.3 62 113-175 370-434 (649)
293 PF02254 TrkA_N: TrkA-N domain 79.4 3.4 7.3E-05 32.0 4.4 49 119-175 4-53 (116)
294 KOG1331 Predicted methyltransf 79.4 3.8 8.3E-05 37.7 5.1 55 110-176 45-99 (293)
295 PRK09424 pntA NAD(P) transhydr 78.3 6.1 0.00013 39.6 6.7 45 107-153 161-206 (509)
296 COG1063 Tdh Threonine dehydrog 78.2 8.8 0.00019 36.4 7.6 47 107-154 165-212 (350)
297 PF05206 TRM13: Methyltransfer 77.0 5.9 0.00013 36.1 5.7 67 109-176 17-87 (259)
298 PF05148 Methyltransf_8: Hypot 77.0 6.3 0.00014 34.8 5.6 60 97-176 59-118 (219)
299 TIGR03201 dearomat_had 6-hydro 76.7 9.7 0.00021 35.7 7.4 45 106-152 162-207 (349)
300 COG4301 Uncharacterized conser 75.2 15 0.00033 33.4 7.6 69 103-171 71-142 (321)
301 PRK07904 short chain dehydroge 74.0 15 0.00032 32.7 7.6 65 109-175 6-73 (253)
302 PRK06949 short chain dehydroge 73.4 20 0.00043 31.5 8.2 61 110-173 8-69 (258)
303 KOG3045 Predicted RNA methylas 73.1 2.3 5E-05 38.8 1.9 73 81-176 146-224 (325)
304 KOG2940 Predicted methyltransf 72.7 4.6 9.9E-05 36.2 3.7 67 105-176 66-133 (325)
305 PF11968 DUF3321: Putative met 69.9 10 0.00022 33.6 5.2 99 97-230 30-137 (219)
306 PF02636 Methyltransf_28: Puta 69.4 7.2 0.00016 35.1 4.4 47 111-157 19-72 (252)
307 COG0677 WecC UDP-N-acetyl-D-ma 69.0 17 0.00037 35.2 6.9 33 120-152 16-49 (436)
308 PRK06940 short chain dehydroge 68.5 31 0.00068 31.1 8.5 58 113-174 4-61 (275)
309 COG3129 Predicted SAM-dependen 68.3 7.5 0.00016 34.9 4.1 74 110-184 78-164 (292)
310 cd08237 ribitol-5-phosphate_DH 68.1 17 0.00038 34.0 6.9 47 107-153 160-207 (341)
311 PRK08945 putative oxoacyl-(acy 68.0 24 0.00053 30.9 7.5 63 108-172 9-72 (247)
312 PRK06172 short chain dehydroge 67.9 36 0.00079 29.8 8.7 62 110-174 6-68 (253)
313 cd05188 MDR Medium chain reduc 67.5 25 0.00055 30.7 7.6 43 108-152 132-175 (271)
314 cd08254 hydroxyacyl_CoA_DH 6-h 67.4 20 0.00044 32.8 7.2 44 107-152 162-206 (338)
315 COG1568 Predicted methyltransf 67.4 20 0.00043 33.2 6.7 86 83-173 124-212 (354)
316 KOG2920 Predicted methyltransf 66.6 5.6 0.00012 36.6 3.0 38 110-149 116-153 (282)
317 TIGR02818 adh_III_F_hyde S-(hy 66.4 22 0.00047 33.7 7.3 47 106-153 181-228 (368)
318 COG0863 DNA modification methy 66.3 15 0.00033 33.4 6.0 49 108-159 220-268 (302)
319 PF02086 MethyltransfD12: D12 65.7 9.1 0.0002 34.1 4.3 44 110-156 20-63 (260)
320 PTZ00357 methyltransferase; Pr 65.2 26 0.00056 36.5 7.6 63 113-175 703-776 (1072)
321 TIGR03451 mycoS_dep_FDH mycoth 64.7 22 0.00048 33.4 6.9 47 105-152 171-218 (358)
322 PRK06914 short chain dehydroge 64.7 47 0.001 29.7 8.9 63 111-174 3-66 (280)
323 PRK05599 hypothetical protein; 64.5 37 0.00081 29.9 8.0 60 113-174 2-61 (246)
324 PRK01747 mnmC bifunctional tRN 64.4 23 0.0005 36.6 7.5 35 111-145 58-103 (662)
325 PRK08213 gluconate 5-dehydroge 64.3 39 0.00086 29.8 8.2 62 110-174 11-73 (259)
326 TIGR02822 adh_fam_2 zinc-bindi 63.3 29 0.00063 32.3 7.4 51 105-161 160-211 (329)
327 PRK07063 short chain dehydroge 63.2 53 0.0011 29.0 8.8 64 110-174 6-70 (260)
328 COG5379 BtaA S-adenosylmethion 63.1 14 0.00031 34.3 5.0 66 87-155 39-105 (414)
329 PRK09880 L-idonate 5-dehydroge 62.6 30 0.00064 32.3 7.3 48 106-160 165-215 (343)
330 KOG1709 Guanidinoacetate methy 62.1 26 0.00056 31.3 6.2 57 109-169 100-156 (271)
331 COG5459 Predicted rRNA methyla 62.0 14 0.0003 35.3 4.8 40 112-151 115-154 (484)
332 PRK08217 fabG 3-ketoacyl-(acyl 62.0 55 0.0012 28.4 8.6 61 110-173 4-65 (253)
333 PF00107 ADH_zinc_N: Zinc-bind 61.8 10 0.00022 29.8 3.4 34 121-160 2-35 (130)
334 cd08281 liver_ADH_like1 Zinc-d 61.8 28 0.00061 32.9 7.1 47 105-152 186-233 (371)
335 cd08255 2-desacetyl-2-hydroxye 61.1 31 0.00067 30.7 6.9 49 103-152 90-139 (277)
336 PRK07677 short chain dehydroge 60.2 58 0.0013 28.6 8.5 60 111-173 1-61 (252)
337 PRK06124 gluconate 5-dehydroge 59.5 65 0.0014 28.2 8.7 61 110-173 10-71 (256)
338 PRK05867 short chain dehydroge 57.7 68 0.0015 28.1 8.5 62 110-174 8-70 (253)
339 PRK07097 gluconate 5-dehydroge 55.7 78 0.0017 28.0 8.6 61 110-173 9-70 (265)
340 PRK07062 short chain dehydroge 54.9 84 0.0018 27.7 8.7 64 110-174 7-71 (265)
341 PRK07576 short chain dehydroge 54.9 86 0.0019 27.9 8.7 61 110-173 8-69 (264)
342 PLN03154 putative allyl alcoho 54.9 45 0.00097 31.3 7.1 50 106-160 154-205 (348)
343 PLN02740 Alcohol dehydrogenase 54.7 39 0.00084 32.1 6.8 48 106-160 194-244 (381)
344 PRK06194 hypothetical protein; 53.7 82 0.0018 28.2 8.5 61 111-174 6-67 (287)
345 COG3510 CmcI Cephalosporin hyd 53.6 36 0.00077 29.9 5.5 60 110-175 69-131 (237)
346 PRK08339 short chain dehydroge 53.3 96 0.0021 27.6 8.8 63 110-174 7-70 (263)
347 KOG1197 Predicted quinone oxid 53.2 50 0.0011 30.4 6.6 52 102-154 138-190 (336)
348 TIGR03206 benzo_BadH 2-hydroxy 53.1 1E+02 0.0022 26.7 8.8 62 110-174 2-64 (250)
349 PRK12829 short chain dehydroge 53.1 86 0.0019 27.5 8.4 64 106-174 6-70 (264)
350 PRK07454 short chain dehydroge 53.0 1.1E+02 0.0025 26.3 9.1 63 110-175 5-68 (241)
351 cd08230 glucose_DH Glucose deh 52.7 33 0.00071 32.1 5.8 47 108-160 170-220 (355)
352 KOG3201 Uncharacterized conser 52.2 12 0.00025 31.9 2.3 48 110-158 29-77 (201)
353 PRK05876 short chain dehydroge 52.0 95 0.0021 27.9 8.6 62 110-174 5-67 (275)
354 PRK07890 short chain dehydroge 52.0 1.1E+02 0.0023 26.8 8.8 62 110-174 4-66 (258)
355 PRK07831 short chain dehydroge 51.9 91 0.002 27.5 8.4 64 110-174 16-81 (262)
356 PRK07102 short chain dehydroge 51.3 99 0.0021 26.8 8.4 62 112-175 2-64 (243)
357 PRK05653 fabG 3-ketoacyl-(acyl 51.3 87 0.0019 26.9 8.0 60 111-173 5-65 (246)
358 PRK06113 7-alpha-hydroxysteroi 51.2 1E+02 0.0022 27.0 8.6 63 110-175 10-73 (255)
359 cd08278 benzyl_alcohol_DH Benz 50.9 55 0.0012 30.8 7.1 47 105-152 181-228 (365)
360 PRK07109 short chain dehydroge 50.9 1.1E+02 0.0023 28.6 9.0 62 110-174 7-69 (334)
361 PRK09242 tropinone reductase; 50.4 1.2E+02 0.0025 26.6 8.8 64 110-174 8-72 (257)
362 PRK06181 short chain dehydroge 50.0 1.1E+02 0.0023 27.0 8.5 60 112-174 2-62 (263)
363 PRK07666 fabG 3-ketoacyl-(acyl 49.8 1.2E+02 0.0027 26.1 8.7 61 111-174 7-68 (239)
364 PRK08251 short chain dehydroge 49.6 1.2E+02 0.0026 26.3 8.7 63 111-174 2-65 (248)
365 PRK06139 short chain dehydroge 49.4 1E+02 0.0022 28.9 8.5 61 110-173 6-67 (330)
366 PF03721 UDPG_MGDP_dh_N: UDP-g 49.4 14 0.00031 31.7 2.6 33 120-152 7-40 (185)
367 PRK07533 enoyl-(acyl carrier p 49.1 75 0.0016 28.2 7.4 61 110-173 9-71 (258)
368 PRK12826 3-ketoacyl-(acyl-carr 48.8 1.2E+02 0.0026 26.1 8.6 60 111-173 6-66 (251)
369 PRK05866 short chain dehydroge 48.8 1.1E+02 0.0023 27.9 8.5 61 111-174 40-101 (293)
370 PRK08277 D-mannonate oxidoredu 48.7 1.2E+02 0.0025 27.1 8.6 62 110-174 9-71 (278)
371 cd08232 idonate-5-DH L-idonate 48.6 68 0.0015 29.5 7.2 46 106-152 161-207 (339)
372 PRK07814 short chain dehydroge 48.5 1.3E+02 0.0028 26.6 8.8 62 110-174 9-71 (263)
373 KOG2793 Putative N2,N2-dimethy 48.0 30 0.00066 31.3 4.5 52 102-156 77-129 (248)
374 cd08238 sorbose_phosphate_red 48.0 43 0.00094 32.2 6.0 49 106-154 171-222 (410)
375 PRK07523 gluconate 5-dehydroge 47.9 1.2E+02 0.0027 26.4 8.5 61 110-173 9-70 (255)
376 TIGR01500 sepiapter_red sepiap 47.3 1E+02 0.0022 27.2 7.9 61 113-174 2-67 (256)
377 PRK10669 putative cation:proto 47.3 27 0.00059 35.3 4.6 49 119-175 423-472 (558)
378 PLN02989 cinnamyl-alcohol dehy 47.2 62 0.0013 29.7 6.7 65 110-175 4-69 (325)
379 cd08261 Zn_ADH7 Alcohol dehydr 46.8 77 0.0017 29.1 7.3 47 104-152 153-200 (337)
380 PLN03209 translocon at the inn 46.7 1.1E+02 0.0023 31.4 8.6 70 105-175 74-151 (576)
381 PRK13394 3-hydroxybutyrate deh 46.0 1.4E+02 0.003 26.1 8.5 63 110-175 6-69 (262)
382 PRK07478 short chain dehydroge 45.9 1.5E+02 0.0032 25.9 8.7 61 111-174 6-67 (254)
383 PRK06720 hypothetical protein; 45.8 1.7E+02 0.0037 24.5 8.6 61 110-173 15-76 (169)
384 PRK08862 short chain dehydroge 45.6 1.3E+02 0.0029 26.2 8.3 61 110-173 4-65 (227)
385 PRK07791 short chain dehydroge 45.6 1.3E+02 0.0029 27.1 8.6 62 109-173 4-75 (286)
386 PLN02668 indole-3-acetate carb 45.6 17 0.00036 35.2 2.6 20 111-130 64-83 (386)
387 PRK07035 short chain dehydroge 45.4 1.5E+02 0.0032 25.9 8.6 61 111-174 8-69 (252)
388 KOG1201 Hydroxysteroid 17-beta 45.2 96 0.0021 28.9 7.3 63 110-175 37-99 (300)
389 cd08295 double_bond_reductase_ 45.1 72 0.0016 29.5 6.8 51 105-160 146-198 (338)
390 PRK07326 short chain dehydroge 45.1 1.4E+02 0.0031 25.6 8.4 61 110-174 5-66 (237)
391 PF01234 NNMT_PNMT_TEMT: NNMT/ 44.9 11 0.00025 34.2 1.3 47 109-157 55-101 (256)
392 PLN02780 ketoreductase/ oxidor 44.9 1.1E+02 0.0023 28.5 7.9 62 110-172 52-114 (320)
393 PRK05875 short chain dehydroge 44.9 1.5E+02 0.0032 26.3 8.7 64 110-174 6-70 (276)
394 PF03492 Methyltransf_7: SAM d 44.8 21 0.00045 33.8 3.1 20 112-131 18-37 (334)
395 PRK08643 acetoin reductase; Va 44.8 1.5E+02 0.0033 25.8 8.6 60 112-174 3-63 (256)
396 PRK03562 glutathione-regulated 44.2 29 0.00063 35.7 4.3 54 112-175 401-455 (621)
397 PRK05854 short chain dehydroge 43.8 1.3E+02 0.0028 27.7 8.3 63 111-174 14-77 (313)
398 cd05278 FDH_like Formaldehyde 43.8 56 0.0012 30.1 5.9 46 106-152 163-209 (347)
399 COG1565 Uncharacterized conser 43.7 84 0.0018 30.1 6.9 48 112-159 79-133 (370)
400 TIGR03366 HpnZ_proposed putati 43.5 1.1E+02 0.0024 27.5 7.7 46 105-153 115-163 (280)
401 TIGR02825 B4_12hDH leukotriene 43.2 89 0.0019 28.6 7.1 50 105-160 133-184 (325)
402 PRK05786 fabG 3-ketoacyl-(acyl 43.2 1.6E+02 0.0035 25.2 8.5 60 110-173 4-64 (238)
403 PRK07774 short chain dehydroge 43.2 1.6E+02 0.0035 25.4 8.5 62 110-174 5-67 (250)
404 PRK03659 glutathione-regulated 43.0 34 0.00074 35.1 4.6 49 119-175 406-455 (601)
405 PRK09291 short chain dehydroge 42.9 1.4E+02 0.0031 25.9 8.2 60 112-174 3-63 (257)
406 cd08294 leukotriene_B4_DH_like 42.5 86 0.0019 28.5 6.9 51 104-160 137-189 (329)
407 PRK05650 short chain dehydroge 41.9 1.7E+02 0.0036 25.9 8.5 58 113-173 2-60 (270)
408 cd08301 alcohol_DH_plants Plan 41.9 96 0.0021 29.1 7.2 49 105-160 182-233 (369)
409 PRK06125 short chain dehydroge 41.8 1.8E+02 0.004 25.4 8.7 62 110-173 6-68 (259)
410 PLN02827 Alcohol dehydrogenase 41.7 93 0.002 29.6 7.1 48 106-160 189-239 (378)
411 PRK08589 short chain dehydroge 41.4 1.6E+02 0.0034 26.3 8.3 61 110-174 5-66 (272)
412 cd05285 sorbitol_DH Sorbitol d 41.2 97 0.0021 28.6 7.1 49 104-153 156-205 (343)
413 PRK08703 short chain dehydroge 40.9 1.7E+02 0.0038 25.2 8.3 61 110-172 5-66 (239)
414 PRK12939 short chain dehydroge 40.8 2E+02 0.0042 24.8 8.7 62 110-174 6-68 (250)
415 PLN02540 methylenetetrahydrofo 40.7 71 0.0015 32.6 6.2 60 112-172 29-98 (565)
416 PRK12429 3-hydroxybutyrate deh 40.4 2E+02 0.0044 24.8 8.8 60 111-173 4-64 (258)
417 PRK06141 ornithine cyclodeamin 39.6 1.8E+02 0.0038 27.1 8.5 63 98-160 112-175 (314)
418 COG0300 DltE Short-chain dehyd 39.5 2.3E+02 0.0049 26.0 8.8 64 109-175 4-69 (265)
419 PRK08594 enoyl-(acyl carrier p 38.9 1.3E+02 0.0027 26.7 7.2 63 110-173 6-70 (257)
420 PRK08303 short chain dehydroge 38.7 1.7E+02 0.0036 27.0 8.1 62 110-174 7-79 (305)
421 cd08245 CAD Cinnamyl alcohol d 38.6 1.3E+02 0.0028 27.5 7.4 45 106-152 158-203 (330)
422 PRK07806 short chain dehydroge 38.6 2.2E+02 0.0048 24.6 8.6 62 110-174 5-68 (248)
423 KOG3673 FtsJ-like RNA methyltr 38.3 9.6 0.00021 38.2 -0.3 28 213-240 416-443 (845)
424 PRK07231 fabG 3-ketoacyl-(acyl 38.3 2E+02 0.0042 24.8 8.3 59 111-173 5-64 (251)
425 PRK08340 glucose-1-dehydrogena 38.2 1.6E+02 0.0036 25.8 7.8 57 113-173 2-59 (259)
426 PRK12384 sorbitol-6-phosphate 37.5 2.2E+02 0.0049 24.8 8.6 63 111-174 2-65 (259)
427 TIGR01963 PHB_DH 3-hydroxybuty 37.3 2.2E+02 0.0048 24.6 8.5 59 113-174 3-62 (255)
428 PRK09072 short chain dehydroge 37.0 2.2E+02 0.0048 25.0 8.5 61 110-174 4-65 (263)
429 cd08236 sugar_DH NAD(P)-depend 36.7 1.2E+02 0.0027 27.8 7.0 48 104-152 153-201 (343)
430 cd08285 NADP_ADH NADP(H)-depen 36.6 1.3E+02 0.0029 27.8 7.2 51 105-160 161-212 (351)
431 PRK07340 ornithine cyclodeamin 36.3 2.2E+02 0.0048 26.3 8.5 62 99-160 113-175 (304)
432 cd08234 threonine_DH_like L-th 36.2 1.3E+02 0.0028 27.4 7.1 48 104-152 153-201 (334)
433 COG1748 LYS9 Saccharopine dehy 36.0 80 0.0017 30.6 5.6 56 112-174 2-59 (389)
434 PRK09186 flagellin modificatio 35.8 2.4E+02 0.0053 24.4 8.5 63 110-174 3-67 (256)
435 PRK08085 gluconate 5-dehydroge 35.5 2.6E+02 0.0056 24.3 8.6 62 110-174 8-70 (254)
436 cd08277 liver_alcohol_DH_like 35.4 1.3E+02 0.0029 28.2 7.1 44 106-152 180-226 (365)
437 PF00106 adh_short: short chai 34.5 2.1E+02 0.0045 22.9 7.4 57 114-173 3-63 (167)
438 KOG1205 Predicted dehydrogenas 34.2 1.6E+02 0.0035 27.2 7.1 65 110-175 11-76 (282)
439 PRK08063 enoyl-(acyl carrier p 33.9 2.5E+02 0.0053 24.3 8.2 62 110-174 3-66 (250)
440 PRK06197 short chain dehydroge 33.5 2.9E+02 0.0063 25.0 8.8 64 110-174 15-79 (306)
441 PF10354 DUF2431: Domain of un 33.4 2.9E+02 0.0063 23.2 8.7 39 120-158 6-49 (166)
442 PRK09496 trkA potassium transp 33.3 83 0.0018 30.5 5.4 55 111-173 231-286 (453)
443 PF07757 AdoMet_MTase: Predict 33.0 30 0.00065 27.3 1.7 36 110-148 58-93 (112)
444 PRK15057 UDP-glucose 6-dehydro 32.9 55 0.0012 31.6 4.0 34 120-153 7-40 (388)
445 cd08239 THR_DH_like L-threonin 32.8 2.1E+02 0.0044 26.3 7.8 46 104-152 157-205 (339)
446 PRK06198 short chain dehydroge 32.7 3E+02 0.0064 24.0 8.5 62 110-174 5-68 (260)
447 PRK06123 short chain dehydroge 32.0 2.7E+02 0.0059 23.9 8.1 59 112-173 3-63 (248)
448 PRK05855 short chain dehydroge 31.9 2.4E+02 0.0053 27.8 8.7 62 111-175 315-377 (582)
449 COG1004 Ugd Predicted UDP-gluc 31.9 53 0.0012 31.9 3.6 33 120-152 7-40 (414)
450 PLN02662 cinnamyl-alcohol dehy 31.5 1.4E+02 0.0031 27.0 6.5 64 111-175 4-68 (322)
451 TIGR02415 23BDH acetoin reduct 31.4 3.1E+02 0.0067 23.7 8.4 58 114-174 3-61 (254)
452 PRK06200 2,3-dihydroxy-2,3-dih 31.4 2.6E+02 0.0057 24.5 8.0 59 110-174 5-64 (263)
453 COG0144 Sun tRNA and rRNA cyto 30.6 20 0.00044 34.2 0.6 23 264-286 229-251 (355)
454 COG0685 MetF 5,10-methylenetet 30.6 2.5E+02 0.0054 26.0 7.8 64 108-172 44-117 (291)
455 PRK07453 protochlorophyllide o 30.5 2.7E+02 0.0059 25.4 8.2 62 110-174 5-67 (322)
456 PRK12859 3-ketoacyl-(acyl-carr 30.2 3.2E+02 0.0068 24.0 8.3 64 109-174 4-80 (256)
457 PRK07024 short chain dehydroge 30.0 2.3E+02 0.005 24.8 7.4 59 112-174 3-62 (257)
458 cd08293 PTGR2 Prostaglandin re 30.0 1.8E+02 0.0039 26.7 6.9 50 107-160 149-202 (345)
459 PRK08265 short chain dehydroge 29.9 2.9E+02 0.0063 24.3 8.0 59 110-174 5-64 (261)
460 PRK06138 short chain dehydroge 29.9 3.4E+02 0.0074 23.3 8.4 61 111-175 5-66 (252)
461 PRK06701 short chain dehydroge 29.8 3E+02 0.0066 24.8 8.3 62 110-174 45-108 (290)
462 PF07942 N2227: N2227-like pro 29.8 1.8E+02 0.0039 26.7 6.6 44 110-156 56-99 (270)
463 PRK06035 3-hydroxyacyl-CoA deh 29.8 95 0.0021 28.3 4.9 42 113-156 5-47 (291)
464 PRK08267 short chain dehydroge 29.6 2.5E+02 0.0054 24.5 7.5 58 113-175 3-61 (260)
465 cd08282 PFDH_like Pseudomonas 29.6 2.1E+02 0.0045 27.0 7.3 48 104-152 170-218 (375)
466 PRK12481 2-deoxy-D-gluconate 3 29.6 3.1E+02 0.0068 23.9 8.1 60 110-174 7-67 (251)
467 PRK12748 3-ketoacyl-(acyl-carr 28.9 2.8E+02 0.006 24.2 7.7 62 110-174 4-79 (256)
468 COG0569 TrkA K+ transport syst 28.8 1.2E+02 0.0026 26.7 5.2 48 120-173 7-55 (225)
469 TIGR01202 bchC 2-desacetyl-2-h 28.4 1.1E+02 0.0023 28.1 5.0 43 109-152 143-186 (308)
470 PF02737 3HCDH_N: 3-hydroxyacy 28.4 1.8E+02 0.004 24.5 6.1 43 114-157 2-44 (180)
471 PF03514 GRAS: GRAS domain fam 28.2 2.1E+02 0.0046 27.4 7.1 64 97-160 97-174 (374)
472 PRK15182 Vi polysaccharide bio 27.6 82 0.0018 30.8 4.2 33 120-152 13-45 (425)
473 PRK05717 oxidoreductase; Valid 27.4 3.4E+02 0.0073 23.6 8.0 59 110-174 9-68 (255)
474 PRK06935 2-deoxy-D-gluconate 3 27.3 3.7E+02 0.0079 23.4 8.2 61 110-174 14-75 (258)
475 PRK12823 benD 1,6-dihydroxycyc 27.3 3.8E+02 0.0081 23.3 8.3 61 110-174 7-68 (260)
476 PRK08628 short chain dehydroge 27.1 3.6E+02 0.0079 23.4 8.1 61 110-174 6-67 (258)
477 PF02056 Glyco_hydro_4: Family 26.7 1.6E+02 0.0035 25.3 5.4 46 115-160 3-57 (183)
478 PRK07069 short chain dehydroge 26.6 1.9E+02 0.0042 24.9 6.2 54 120-173 7-62 (251)
479 PRK09496 trkA potassium transp 26.6 1.3E+02 0.0028 29.2 5.4 47 120-173 7-54 (453)
480 PRK07792 fabG 3-ketoacyl-(acyl 26.5 4.1E+02 0.009 24.1 8.6 61 110-173 11-73 (306)
481 PRK07201 short chain dehydroge 26.4 3.1E+02 0.0068 27.9 8.5 61 111-174 371-432 (657)
482 PRK06114 short chain dehydroge 26.3 4.1E+02 0.009 23.1 8.3 62 110-174 7-70 (254)
483 TIGR00561 pntA NAD(P) transhyd 26.2 2.4E+02 0.0053 28.4 7.3 43 109-153 162-205 (511)
484 TIGR03589 PseB UDP-N-acetylglu 26.0 2.1E+02 0.0045 26.5 6.5 61 110-175 3-66 (324)
485 PRK07041 short chain dehydroge 26.0 2.1E+02 0.0045 24.4 6.2 52 120-174 5-57 (230)
486 PRK08690 enoyl-(acyl carrier p 25.8 2.9E+02 0.0064 24.3 7.3 62 110-174 5-68 (261)
487 cd08241 QOR1 Quinone oxidoredu 25.6 2.8E+02 0.006 24.6 7.2 46 105-152 134-181 (323)
488 PRK11933 yebU rRNA (cytosine-C 25.5 21 0.00046 35.5 -0.3 24 263-286 182-205 (470)
489 PRK06505 enoyl-(acyl carrier p 25.4 3.4E+02 0.0074 24.2 7.7 62 110-174 6-69 (271)
490 KOG0058 Peptide exporter, ABC 25.1 1E+02 0.0022 32.2 4.5 151 106-271 489-653 (716)
491 PRK05872 short chain dehydroge 24.9 3.3E+02 0.0072 24.6 7.6 61 110-174 8-69 (296)
492 PF02719 Polysacc_synt_2: Poly 24.8 1.8E+02 0.0039 27.1 5.7 55 119-173 5-65 (293)
493 KOG1429 dTDP-glucose 4-6-dehyd 24.3 4.7E+02 0.01 24.6 8.1 62 108-173 24-86 (350)
494 PLN00015 protochlorophyllide r 24.2 1.5E+02 0.0033 27.1 5.2 54 119-174 4-59 (308)
495 PRK06101 short chain dehydroge 23.9 2.2E+02 0.0047 24.7 6.0 56 113-175 3-59 (240)
496 PRK08415 enoyl-(acyl carrier p 23.7 4E+02 0.0087 23.8 7.8 62 110-174 4-67 (274)
497 cd00401 AdoHcyase S-adenosyl-L 23.4 1.8E+02 0.0038 28.5 5.6 43 109-153 200-243 (413)
498 PRK08324 short chain dehydroge 23.2 3.6E+02 0.0078 28.0 8.2 61 110-174 421-482 (681)
499 PLN00198 anthocyanidin reducta 23.1 2.7E+02 0.006 25.5 6.8 68 106-175 4-72 (338)
500 cd08300 alcohol_DH_class_III c 23.0 3.1E+02 0.0068 25.6 7.3 48 106-160 182-232 (368)
No 1
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.2e-47 Score=357.07 Aligned_cols=238 Identities=24% Similarity=0.317 Sum_probs=204.9
Q ss_pred cCCCChHHHHH-HHHHcCCChh--hhh-hcCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCCCCCCc
Q 021397 10 SKLPLPEAFLD-FLKENGLDPS--VYS-AADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIA 82 (313)
Q Consensus 10 ~~ys~P~w~~~-~~~~~g~~~~--~~~-~~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~~~~~ 82 (313)
.+|++|+|+++ +.+.+|.+.. +.. .+.++|+++|+|+ +.+++.+.|+.. |+...+..+.+.++.+....++.
T Consensus 50 ~~~~~p~w~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~l~~~-~~~~~~~~~~~~~~~i~~~~~~~ 128 (355)
T COG0144 50 FRYSHPEWLVEKLPDALGEDEAEAIAAALLRPPPRSLRVNTLKADVEELLEALEEA-GVLDEKPWVLDEVLRIEASGPIG 128 (355)
T ss_pred ccccCcHHHHHHHHHHcChHHHHHHHHHcCCCCCeeEEEcCccCCHHHHHHHHhhc-ccccccCCccccEEEecCCCCcc
Confidence 56999999999 6777887743 333 4578889999998 567778888765 66555554556788888877889
Q ss_pred ccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcE-EEEEcCCHHHHHHHHHHHHHcCCC
Q 021397 83 TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGS-VTGVDVARHRLAACRTLLQKYALG 161 (313)
Q Consensus 83 ~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~-V~avD~s~~~l~~~~~~~~~~g~~ 161 (313)
.+++|.+|+|++||.+||+++.+|+|+||++|||+||||||||+|+|++|.+.+. |+|+|++++|++.+++|++|+|+.
T Consensus 129 ~~~~~~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~ 208 (355)
T COG0144 129 RLPEFAEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR 208 (355)
T ss_pred cChhhhceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999999987554 599999999999999999999997
Q ss_pred CcEEEEecCCC----------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhcccc
Q 021397 162 DRCRLFVADGT----------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSE 230 (313)
Q Consensus 162 ~~v~~~~~D~~----------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~ 230 (313)
|+.+++.|++ .||.+++| || |++|+++++|++ .|.....+......+|.++|.++.+++++
T Consensus 209 -nv~~~~~d~~~~~~~~~~~~~fD~iLlDaPC----Sg~G~irr~Pd~--~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~- 280 (355)
T COG0144 209 -NVIVVNKDARRLAELLPGGEKFDRILLDAPC----SGTGVIRRDPDV--KWRRTPEDIAELAKLQKEILAAALKLLKP- 280 (355)
T ss_pred -ceEEEecccccccccccccCcCcEEEECCCC----CCCcccccCccc--cccCCHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 5888888874 27888888 88 999999999999 56666667777889999999999999866
Q ss_pred CcceeEeecCCcEEEEEcCCCCCcccchhhhhhcccc
Q 021397 231 HPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDK 267 (313)
Q Consensus 231 ~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~ 267 (313)
||+||||||| ++|+|||+||.+.+.+
T Consensus 281 ----------GG~LVYSTCS-~~~eENE~vV~~~L~~ 306 (355)
T COG0144 281 ----------GGVLVYSTCS-LTPEENEEVVERFLER 306 (355)
T ss_pred ----------CCEEEEEccC-CchhcCHHHHHHHHHh
Confidence 9999999999 9999999999766654
No 2
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=1.8e-46 Score=364.30 Aligned_cols=236 Identities=19% Similarity=0.247 Sum_probs=206.4
Q ss_pred CCChHHHHH-HHHHcCC-Chh--hhhh-cCCCCeEEEecCC---hHHHHHHHHHhcCCceEEeccCCCcEEeCCC----C
Q 021397 12 LPLPEAFLD-FLKENGL-DPS--VYSA-ADSTPRYIRLKTG---NEADLEEIEAELKCKLEKVVWLSGFYSLPPD----I 79 (313)
Q Consensus 12 ys~P~w~~~-~~~~~g~-~~~--~~~~-~~~~~~~~Rvn~~---~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~----~ 79 (313)
..+|+||++ |.+.+|. ++. ++.+ ++++|+++|||+. .+++.+.|++. |+.+++++|+|+++.+... .
T Consensus 2 ~~lP~~fv~~~~~~lg~~ee~~~~l~a~~~~~~~~lRvN~lK~~~~~~~~~L~~~-g~~~~~~p~~~~g~~~~~~~~~~~ 80 (470)
T PRK11933 2 VYLPDAFLTQMREAMPSHLSMDDFIAACQRPLRRSIRVNTLKISVADFLQLMAPY-GWTLTPIPWCEEGFWIERDDEDAL 80 (470)
T ss_pred CcChHHHHHHHHHHhCCcHHHHHHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhC-CCceeECCCCCceEEEecCccccC
Confidence 359999999 7778896 332 4444 5888899999974 46777777765 9999999999999998742 2
Q ss_pred CCcccccccCCeEEEecHHHHHHHHhc--CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH
Q 021397 80 KIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157 (313)
Q Consensus 80 ~~~~~~~~~~G~~~~Qd~ss~~~~~~l--~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~ 157 (313)
.+..++.|..|+||+||+|||+++.++ ++++|++|||+||||||||+++|+++++.|.|+|+|+++.|++.+++|+++
T Consensus 81 ~~~~~~~~~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r 160 (470)
T PRK11933 81 PLGNTAEHLSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISR 160 (470)
T ss_pred CcccChHHHCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999 899999999999999999999999999889999999999999999999999
Q ss_pred cCCCCcEEEEecCCC--------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhcc
Q 021397 158 YALGDRCRLFVADGT--------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVR 228 (313)
Q Consensus 158 ~g~~~~v~~~~~D~~--------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r 228 (313)
+|+. ++.+++.|+. .||.|++| || |++|+++++|++...|+++ +.....++|.++|.++.++++
T Consensus 161 ~G~~-nv~v~~~D~~~~~~~~~~~fD~ILvDaPC----SG~G~~rk~p~~~~~~s~~--~v~~l~~lQ~~iL~~A~~~Lk 233 (470)
T PRK11933 161 CGVS-NVALTHFDGRVFGAALPETFDAILLDAPC----SGEGTVRKDPDALKNWSPE--SNLEIAATQRELIESAFHALK 233 (470)
T ss_pred cCCC-eEEEEeCchhhhhhhchhhcCeEEEcCCC----CCCcccccCHHHhhhCCHH--HHHHHHHHHHHHHHHHHHHcC
Confidence 9996 7999999975 37888999 89 9999999999997777654 445678899999999999986
Q ss_pred ccCcceeEeecCCcEEEEEcCCCCCcccchhhhhhcccc
Q 021397 229 SEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDK 267 (313)
Q Consensus 229 ~~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~ 267 (313)
+ ||+||||||| ++|+|||+||.+++++
T Consensus 234 p-----------GG~LVYSTCT-~~~eENE~vV~~~L~~ 260 (470)
T PRK11933 234 P-----------GGTLVYSTCT-LNREENQAVCLWLKET 260 (470)
T ss_pred C-----------CcEEEEECCC-CCHHHHHHHHHHHHHH
Confidence 6 9999999999 9999999999877654
No 3
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4e-44 Score=347.13 Aligned_cols=241 Identities=15% Similarity=0.179 Sum_probs=210.8
Q ss_pred cccccCCCChHHHHH-HHHHcCCChh--hhh-hcCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCC-
Q 021397 6 DGEISKLPLPEAFLD-FLKENGLDPS--VYS-AADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPP- 77 (313)
Q Consensus 6 ~~~~~~ys~P~w~~~-~~~~~g~~~~--~~~-~~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~- 77 (313)
+.++.+||+|+|+++ |.+.+|.+.+ ++. .++++|.++|+|+ +++++.+.|+++ |+.+++.++.|+++.++.
T Consensus 126 ~~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~RvN~~k~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~ 204 (431)
T PRK14903 126 KELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTMLRVNSLAITREEVIKILAEE-GTEAVPGKHSPFSLIVRKL 204 (431)
T ss_pred hhhhhhhcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCCeeEEeeCCcCCHHHHHHHHHHC-CCeeEECCCCCceEEEcCC
Confidence 347889999999999 8899997754 344 4589999999997 456778888776 999999999999999875
Q ss_pred CCCCcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH
Q 021397 78 DIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157 (313)
Q Consensus 78 ~~~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~ 157 (313)
...+..++.|++|++++||.+|++++.++++++|++|||+|||||+||+++++.+++.+.|+|+|+|++|++.+++|+++
T Consensus 205 ~~~~~~~~~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r 284 (431)
T PRK14903 205 GVNMNDSRVIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKR 284 (431)
T ss_pred CCCcccChHHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999999999999999999999998789999999999999999999999
Q ss_pred cCCCCcEEEEecCCC--------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhcc
Q 021397 158 YALGDRCRLFVADGT--------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVR 228 (313)
Q Consensus 158 ~g~~~~v~~~~~D~~--------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r 228 (313)
+|+. +++++++|+. .||.|++| || |+.|+++++|++. |.....+......+|.+++.++.+.++
T Consensus 285 ~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~DaPC----sg~G~~~~~p~~~--~~~~~~~~~~l~~~Q~~iL~~a~~~Lk 357 (431)
T PRK14903 285 LKLS-SIEIKIADAERLTEYVQDTFDRILVDAPC----TSLGTARNHPEVL--RRVNKEDFKKLSEIQLRIVSQAWKLLE 357 (431)
T ss_pred cCCC-eEEEEECchhhhhhhhhccCCEEEECCCC----CCCccccCChHHH--HhCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9996 6999999974 36777888 78 8899999999984 555555666778899999999999886
Q ss_pred ccCcceeEeecCCcEEEEEcCCCCCcccchhhhhhccc
Q 021397 229 SEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYD 266 (313)
Q Consensus 229 ~~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~ 266 (313)
+ ||+||||||| ++|+|||+||...++
T Consensus 358 p-----------GG~LvYsTCs-~~~eEne~vv~~fl~ 383 (431)
T PRK14903 358 K-----------GGILLYSTCT-VTKEENTEVVKRFVY 383 (431)
T ss_pred C-----------CCEEEEEECC-CChhhCHHHHHHHHH
Confidence 6 9999999999 999999999976554
No 4
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=2e-43 Score=343.24 Aligned_cols=241 Identities=18% Similarity=0.225 Sum_probs=210.2
Q ss_pred ccccCCCChHHHHH-HHHHcCCChh--hhh-hcCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCCC-
Q 021397 7 GEISKLPLPEAFLD-FLKENGLDPS--VYS-AADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPPD- 78 (313)
Q Consensus 7 ~~~~~ys~P~w~~~-~~~~~g~~~~--~~~-~~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~- 78 (313)
.++.+||+|+|+++ |.+.+|.+.+ ++. .+.++|.++|+|+ +.+++.+.|+++ |+.+++.+|+|+++.+...
T Consensus 142 ~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~ 220 (434)
T PRK14901 142 RLAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEA-GITATPIPGLPQGLRLTGNP 220 (434)
T ss_pred HHHHHhCCcHHHHHHHHHHhCHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHC-CCceEECCCCCCeEEecCCC
Confidence 37789999999999 8889997753 444 4588999999997 456778888876 9999999999999999753
Q ss_pred CCCcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 021397 79 IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158 (313)
Q Consensus 79 ~~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~ 158 (313)
..+..+++|++|++++||.+|++++.++++++|++|||+|||||+||+++++.+++.++|+|+|+++.|++.+++|++++
T Consensus 221 ~~~~~~~~f~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~ 300 (434)
T PRK14901 221 GSIRQLPGYEEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL 300 (434)
T ss_pred CccccChHHhCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc
Confidence 35888999999999999999999999999999999999999999999999999987789999999999999999999999
Q ss_pred CCCCcEEEEecCCCC-----------CCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhh
Q 021397 159 ALGDRCRLFVADGTT-----------FSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAI 226 (313)
Q Consensus 159 g~~~~v~~~~~D~~~-----------~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~ 226 (313)
|+. +|+++++|+.. ||.+++| || |++|+++++|++ .|.....+......+|.+++.++.++
T Consensus 301 g~~-~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPC----Sg~G~~~r~p~~--~~~~~~~~~~~l~~~Q~~iL~~a~~~ 373 (434)
T PRK14901 301 GLK-SIKILAADSRNLLELKPQWRGYFDRILLDAPC----SGLGTLHRHPDA--RWRQTPEKIQELAPLQAELLESLAPL 373 (434)
T ss_pred CCC-eEEEEeCChhhcccccccccccCCEEEEeCCC----CcccccccCcch--hhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 996 69999999853 5667777 77 888999999998 67666666667788899999999998
Q ss_pred ccccCcceeEeecCCcEEEEEcCCCCCcccchhhhhhcccc
Q 021397 227 VRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDK 267 (313)
Q Consensus 227 ~r~~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~ 267 (313)
++| ||+||||||| ++|+|||++|.+.+++
T Consensus 374 lkp-----------gG~lvystcs-i~~~Ene~~v~~~l~~ 402 (434)
T PRK14901 374 LKP-----------GGTLVYATCT-LHPAENEAQIEQFLAR 402 (434)
T ss_pred cCC-----------CCEEEEEeCC-CChhhHHHHHHHHHHh
Confidence 866 9999999999 9999999999666554
No 5
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=4.7e-43 Score=339.97 Aligned_cols=242 Identities=18% Similarity=0.196 Sum_probs=207.3
Q ss_pred cccccCCCChHHHHH-HHHHcCCCh-hhhh-hcCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCCCC
Q 021397 6 DGEISKLPLPEAFLD-FLKENGLDP-SVYS-AADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPPDI 79 (313)
Q Consensus 6 ~~~~~~ys~P~w~~~-~~~~~g~~~-~~~~-~~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~~ 79 (313)
+.++.+||+|+|+++ |.+.++.+. .+.. .++++|+++|+|+ +.+++.+.|+++ |+.+++.+|.|+++.+..+.
T Consensus 129 ~~l~~~~s~P~wl~~~~~~~~~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~~~ 207 (426)
T TIGR00563 129 NALDARYLHPEWLVKRLQKAYPGQWQSICEANNQRPPMWLRINRTKHSRDEWLALLAEA-GMKGFPHDLAPDAVRLETPA 207 (426)
T ss_pred HhHHHHcCCCHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEEcCCcCCHHHHHHHHHhc-CCceeeCCCCCCeEEECCCC
Confidence 457889999999999 888885442 2443 4589999999997 456778888876 99999999999999998655
Q ss_pred CCcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159 (313)
Q Consensus 80 ~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g 159 (313)
.+..++.|++|++++||.+|++++.++++++|++|||+|||||+||.++++.++ .++|+|+|++++|++.+++|++++|
T Consensus 208 ~~~~~~~~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g 286 (426)
T TIGR00563 208 AVHALPGFEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLG 286 (426)
T ss_pred CcccCchhhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 688999999999999999999999999999999999999999999999999987 6899999999999999999999999
Q ss_pred CCCcEEEEecCCC---------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccc
Q 021397 160 LGDRCRLFVADGT---------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRS 229 (313)
Q Consensus 160 ~~~~v~~~~~D~~---------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~ 229 (313)
+..++.+..+|+. .||.+++| || |++|+++++|++ .|.....+......+|.+++.++.++++|
T Consensus 287 ~~~~v~~~~~d~~~~~~~~~~~~fD~VllDaPc----Sg~G~~~~~p~~--~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp 360 (426)
T TIGR00563 287 LTIKAETKDGDGRGPSQWAENEQFDRILLDAPC----SATGVIRRHPDI--KWLRKPRDIAELAELQSEILDAIWPLLKT 360 (426)
T ss_pred CCeEEEEeccccccccccccccccCEEEEcCCC----CCCcccccCcch--hhcCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8533444666653 37777888 78 999999999998 67666666777788999999999998866
Q ss_pred cCcceeEeecCCcEEEEEcCCCCCcccchhhhhhcccc
Q 021397 230 EHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDK 267 (313)
Q Consensus 230 ~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~ 267 (313)
||+||||||| ++|+|||+||...+.+
T Consensus 361 -----------gG~lvystcs-~~~~Ene~~v~~~l~~ 386 (426)
T TIGR00563 361 -----------GGTLVYATCS-VLPEENSEQIKAFLQE 386 (426)
T ss_pred -----------CcEEEEEeCC-CChhhCHHHHHHHHHh
Confidence 9999999999 9999999999655543
No 6
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=4.3e-43 Score=322.51 Aligned_cols=214 Identities=22% Similarity=0.301 Sum_probs=186.0
Q ss_pred hcCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCc--EEeCCCCCCcccccccCCeEEEecHHHHHHHHhcCC
Q 021397 34 AADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGF--YSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNI 108 (313)
Q Consensus 34 ~~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~ 108 (313)
.+.++|.++|+|+ +++++.+.|++. |+.+++.++.+++ +.......+..++.|++|++++||.+||+++.+|++
T Consensus 5 ~n~~~~~~iRvN~~k~~~~~~~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~G~~~vQd~sS~l~~~~L~~ 83 (283)
T PF01189_consen 5 NNCPPPVTIRVNTLKISREELLEELEEE-GIQLEPIPRSPDALRVIGKSPYSICSLPEFKNGLFYVQDESSQLVALALDP 83 (283)
T ss_dssp CTS--GEEEEE-TTTSSHHHHHHHHHHT-THEEEEETSTTCEEEEEEECSSCGGGSHHHHTTSEEEHHHHHHHHHHHHTT
T ss_pred cCCCCCeEEEECcCcCCHHHHHHHHhhc-ccceEEcccccchhccccccccchhhchhhhCCcEEecccccccccccccc
Confidence 4688999999997 457788899876 9999999999998 344455678999999999999999999999999999
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC---------CCCcccc
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT---------TFSLAPL 179 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~---------~~d~v~~ 179 (313)
++|+.|||+||||||||.++++.|++.|.|+|+|++++|+..++++++++|+. ++.++..|++ .||.+++
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccccccchhhc
Confidence 99999999999999999999999998999999999999999999999999996 6888888874 3788888
Q ss_pred c-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhc----cccCcceeEeecCCcEEEEEcCCCCCc
Q 021397 180 R-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIV----RSEHPELIFYGRRSGIVGLTKEEIYQS 254 (313)
Q Consensus 180 D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~----r~~~~El~~~~k~gG~lvysTcs~~~p 254 (313)
| || |++|+++++|++ .|.....+......+|.++|+++.+++ ++ ||+||||||| ++|
T Consensus 163 DaPC----Sg~G~i~r~p~~--~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~-----------gG~lvYsTCS-~~~ 224 (283)
T PF01189_consen 163 DAPC----SGLGTIRRNPDI--KWRRSPEDIEKLAELQREILDNAAKLLNIDFKP-----------GGRLVYSTCS-LSP 224 (283)
T ss_dssp ECSC----CCGGGTTTCTTH--HHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE-----------EEEEEEEESH-HHG
T ss_pred CCCc----cchhhhhhccch--hhcccccccchHHHHHHHHHHHHHHhhcccccC-----------CCeEEEEecc-HHH
Confidence 9 88 999999999998 455555666677888999999999988 77 9999999999 999
Q ss_pred ccchhhhhhcccc
Q 021397 255 VCNSEVSSSGYDK 267 (313)
Q Consensus 255 ~Ene~vv~~~~~~ 267 (313)
+|||+||...+++
T Consensus 225 eENE~vV~~fl~~ 237 (283)
T PF01189_consen 225 EENEEVVEKFLKR 237 (283)
T ss_dssp GGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999766554
No 7
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=3.7e-40 Score=319.72 Aligned_cols=239 Identities=19% Similarity=0.254 Sum_probs=205.8
Q ss_pred cccccCCCChHHHHH-HHHHcCCCh-hhhh-hcCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCCCC
Q 021397 6 DGEISKLPLPEAFLD-FLKENGLDP-SVYS-AADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPPDI 79 (313)
Q Consensus 6 ~~~~~~ys~P~w~~~-~~~~~g~~~-~~~~-~~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~~ 79 (313)
..++.+||+|+|+++ |.+.+|.+. .+.. .+.++|.++|+|+ +++++.+.|+++ |+.+++.+|.|+++.+....
T Consensus 135 ~~~~~~~s~P~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~ 213 (427)
T PRK10901 135 ADPVARYNHPSWLIKRLKKAYPEQWQAILAANNQRPPMWLRVNRRHHSRDAYLALLAEA-GIEAFPHAVGPDAIRLETPV 213 (427)
T ss_pred hchHhHhcCCHHHHHHHHHHhHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHhC-CCceeecCCCCCeEEECCCC
Confidence 357889999999999 888886442 2444 4589999999997 457778888876 99999999999999998655
Q ss_pred CCcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159 (313)
Q Consensus 80 ~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g 159 (313)
.+..+++|++|++++||.+|++++.++++++|++|||+|||||++|.++++.+++ +.|+|+|+++.|++.+++|++++|
T Consensus 214 ~~~~~~~~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g 292 (427)
T PRK10901 214 PVHQLPGFAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLG 292 (427)
T ss_pred CcccCchhhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcC
Confidence 6889999999999999999999999999999999999999999999999998754 799999999999999999999999
Q ss_pred CCCcEEEEecCCC---------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccc
Q 021397 160 LGDRCRLFVADGT---------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRS 229 (313)
Q Consensus 160 ~~~~v~~~~~D~~---------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~ 229 (313)
+ +++++++|+. .||.+++| || +++|+++++|++ .|.....+.......|.+++..+.++++|
T Consensus 293 ~--~~~~~~~D~~~~~~~~~~~~fD~Vl~D~Pc----s~~G~~~~~p~~--~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp 364 (427)
T PRK10901 293 L--KATVIVGDARDPAQWWDGQPFDRILLDAPC----SATGVIRRHPDI--KWLRRPEDIAALAALQSEILDALWPLLKP 364 (427)
T ss_pred C--CeEEEEcCcccchhhcccCCCCEEEECCCC----CcccccccCccc--cccCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8 3788999984 36677778 67 888999999997 57666666666778899999999988865
Q ss_pred cCcceeEeecCCcEEEEEcCCCCCcccchhhhhhccc
Q 021397 230 EHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYD 266 (313)
Q Consensus 230 ~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~ 266 (313)
||+++||||| +.++|||+++...+.
T Consensus 365 -----------GG~lvystcs-~~~~Ene~~v~~~l~ 389 (427)
T PRK10901 365 -----------GGTLLYATCS-ILPEENEQQIKAFLA 389 (427)
T ss_pred -----------CCEEEEEeCC-CChhhCHHHHHHHHH
Confidence 9999999999 999999999965554
No 8
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.2e-39 Score=317.88 Aligned_cols=240 Identities=21% Similarity=0.265 Sum_probs=208.9
Q ss_pred ccccCCCChHHHHH-HHHHcCCChh--hhhh-cCCCCeEEEecCC---hHHHHHHHHHhcCCceEEeccCCCcEEeCCCC
Q 021397 7 GEISKLPLPEAFLD-FLKENGLDPS--VYSA-ADSTPRYIRLKTG---NEADLEEIEAELKCKLEKVVWLSGFYSLPPDI 79 (313)
Q Consensus 7 ~~~~~ys~P~w~~~-~~~~~g~~~~--~~~~-~~~~~~~~Rvn~~---~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~~ 79 (313)
.++.+||+|+|+++ |.+.+|.+.+ ++.+ +.++|.++|+|+. .+++.+.|+++ |+.+++.+|.|+++.++. .
T Consensus 142 ~~~~~~~~P~w~~~~~~~~~g~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~-g~~~~~~~~~~~~~~~~~-~ 219 (444)
T PRK14902 142 RLSIKYSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEE-GYEVEESLLSPEALVIEK-G 219 (444)
T ss_pred HHHHHhCChHHHHHHHHHHhCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHc-CceeEEcCCCCCeEEEeC-C
Confidence 36789999999999 8888987754 4444 5889999999974 56777888876 999999999999999986 5
Q ss_pred CCcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159 (313)
Q Consensus 80 ~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g 159 (313)
.+..++.|++|.+++||.+|++++.++++++|++|||+|||||++|+++++.+++.+.|+|+|+++.+++.+++|++++|
T Consensus 220 ~~~~~~~~~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g 299 (444)
T PRK14902 220 NIAGTDLFKDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG 299 (444)
T ss_pred CcccChHHhCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999999998667899999999999999999999999
Q ss_pred CCCcEEEEecCCC--------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhcccc
Q 021397 160 LGDRCRLFVADGT--------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSE 230 (313)
Q Consensus 160 ~~~~v~~~~~D~~--------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~ 230 (313)
+. +++++++|+. .||.+++| || ++.|+++++|++ .|............+|..++..+.++++|
T Consensus 300 ~~-~v~~~~~D~~~~~~~~~~~fD~Vl~D~Pc----sg~G~~~~~p~~--~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp- 371 (444)
T PRK14902 300 LT-NIETKALDARKVHEKFAEKFDKILVDAPC----SGLGVIRRKPDI--KYNKTKEDIESLQEIQLEILESVAQYLKK- 371 (444)
T ss_pred CC-eEEEEeCCcccccchhcccCCEEEEcCCC----CCCeeeccCcch--hhcCCHHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 96 5999999984 36677777 67 888999999997 56666566667788899999999988865
Q ss_pred CcceeEeecCCcEEEEEcCCCCCcccchhhhhhcccc
Q 021397 231 HPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDK 267 (313)
Q Consensus 231 ~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~ 267 (313)
||+||||||| +.++|||.|+.+.+++
T Consensus 372 ----------GG~lvystcs-~~~~Ene~vv~~~l~~ 397 (444)
T PRK14902 372 ----------GGILVYSTCT-IEKEENEEVIEAFLEE 397 (444)
T ss_pred ----------CCEEEEEcCC-CChhhhHHHHHHHHHh
Confidence 9999999999 9999999999665543
No 9
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=8.4e-39 Score=311.77 Aligned_cols=238 Identities=18% Similarity=0.194 Sum_probs=199.9
Q ss_pred ccccCCCChHHHHH-HHHHcCCChh--hhh-hcCCCCeEEEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCCCC
Q 021397 7 GEISKLPLPEAFLD-FLKENGLDPS--VYS-AADSTPRYIRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPPDI 79 (313)
Q Consensus 7 ~~~~~ys~P~w~~~-~~~~~g~~~~--~~~-~~~~~~~~~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~~~ 79 (313)
.++.+||+|+|+++ |.+.+|.+.+ +.. .+.+||.++|+|+ +.+++.+.|.++ |+.+++.++ + .+.+...
T Consensus 144 ~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~-~~~~~~~~~-~-~~~~~~~- 219 (445)
T PRK14904 144 RLSLLYSHPEWLLERWIARYGEERTEAMLSYNNQAPLFGFRINRLKTTPEKFLAAPADA-SVTFEKSGL-P-NFFLSKD- 219 (445)
T ss_pred HHHHHhCCCHHHHHHHHHHhChHHHHHHHHHhCCCCCceeEeCCCCCCHHHHHHHHHhC-CCceEEcCc-c-eEEEecc-
Confidence 46789999999999 8888997754 444 3578888999997 566777788766 888877664 3 3455432
Q ss_pred CCcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159 (313)
Q Consensus 80 ~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g 159 (313)
.....+.|..|.+++||++|++++.++++++|++|||+|||||+||.++++.+++.+.|+|+|+|+.|++.++++++++|
T Consensus 220 ~~~~~~~~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g 299 (445)
T PRK14904 220 FSLFEPFLKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALG 299 (445)
T ss_pred ccccChHHhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhC
Confidence 22233899999999999999999999999999999999999999999999998777899999999999999999999999
Q ss_pred CCCcEEEEecCCCC------CCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCc
Q 021397 160 LGDRCRLFVADGTT------FSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHP 232 (313)
Q Consensus 160 ~~~~v~~~~~D~~~------~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~ 232 (313)
+. +|+++++|+.. ||.+++| || |++|+++++|++ .|.............|.+++.++.+.+++
T Consensus 300 ~~-~v~~~~~Da~~~~~~~~fD~Vl~D~Pc----sg~g~~~r~p~~--~~~~~~~~~~~l~~~q~~iL~~a~~~lkp--- 369 (445)
T PRK14904 300 IT-IIETIEGDARSFSPEEQPDAILLDAPC----TGTGVLGRRAEL--RWKLTPEKLAELVGLQAELLDHAASLLKP--- 369 (445)
T ss_pred CC-eEEEEeCcccccccCCCCCEEEEcCCC----CCcchhhcCcch--hhcCCHHHHHHHHHHHHHHHHHHHHhcCC---
Confidence 95 79999999864 7778888 88 999999999998 46655556666788899999999998866
Q ss_pred ceeEeecCCcEEEEEcCCCCCcccchhhhhhcccc
Q 021397 233 ELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDK 267 (313)
Q Consensus 233 El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~ 267 (313)
||+|+|+||| ++|+|||+||...+++
T Consensus 370 --------gG~lvystcs-~~~~Ene~~v~~~l~~ 395 (445)
T PRK14904 370 --------GGVLVYATCS-IEPEENELQIEAFLQR 395 (445)
T ss_pred --------CcEEEEEeCC-CChhhHHHHHHHHHHh
Confidence 9999999999 9999999999666554
No 10
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=100.00 E-value=3.1e-39 Score=300.02 Aligned_cols=274 Identities=17% Similarity=0.166 Sum_probs=210.8
Q ss_pred ccccCCCChHHHHH-HHHHcCCChh--hhhh-cCCCCeEEEecCCh---HHHHHHHHHhcCCceEEe-ccCCCcEEeCC-
Q 021397 7 GEISKLPLPEAFLD-FLKENGLDPS--VYSA-ADSTPRYIRLKTGN---EADLEEIEAELKCKLEKV-VWLSGFYSLPP- 77 (313)
Q Consensus 7 ~~~~~ys~P~w~~~-~~~~~g~~~~--~~~~-~~~~~~~~Rvn~~~---~~~~~~L~~~~g~~~~~~-~~~~~~~~l~~- 77 (313)
++|..|++-..+.. +++.+...+. .+++ ..++|.++|.|+.+ -+....|... |+...+. .|..-++.+-.
T Consensus 130 ~~~~~y~y~~~l~~~~~e~~~~~ev~~~~e~~~~~rp~tir~ntlk~~rrd~~~~L~nr-gv~~~pl~~ws~vgl~v~~s 208 (460)
T KOG1122|consen 130 DGAHYYAYGVFLAEKLMELFPLVEVYEFLEANEKPRPVTIRTNTLKTRRRDLAVELSNR-GVNLDPLGKWSKVGLVVFDS 208 (460)
T ss_pred cccceechHHHHHHHhcccccHHHHHHHHHhhcCCCCeeEEecccchhhhhHHHHHHhc-ccCcccccccccceEEEecC
Confidence 45667777777766 4443322222 2233 47888999999754 3445555544 7765443 47777777754
Q ss_pred CCCCcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH
Q 021397 78 DIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157 (313)
Q Consensus 78 ~~~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~ 157 (313)
..++..++.|..|++.+|+.+|.+++.+|+||||++||||||||||||++||.+|+++|.|+|+|.+..|+..++.|+.+
T Consensus 209 ~vpigat~e~lag~~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r 288 (460)
T KOG1122|consen 209 VVPIGATPEYLAGHYMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR 288 (460)
T ss_pred ccccCCchhhcccceeeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcEEEEecCCCC---------CCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhc
Q 021397 158 YALGDRCRLFVADGTT---------FSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIV 227 (313)
Q Consensus 158 ~g~~~~v~~~~~D~~~---------~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~ 227 (313)
+|+. +..+.+.|+.. ||.|++| || |++|++.+.+.+ .|.....+..+...+|++++..|..++
T Consensus 289 lGv~-ntiv~n~D~~ef~~~~~~~~fDRVLLDAPC----SGtgvi~K~~~v--kt~k~~~di~~~~~LQr~LllsAi~lv 361 (460)
T KOG1122|consen 289 LGVT-NTIVSNYDGREFPEKEFPGSFDRVLLDAPC----SGTGVISKDQSV--KTNKTVKDILRYAHLQRELLLSAIDLV 361 (460)
T ss_pred hCCC-ceEEEccCcccccccccCcccceeeecCCC----CCCccccccccc--ccchhHHHHHHhHHHHHHHHHHHHhhc
Confidence 9996 68888999864 5666677 67 777788888776 676777777788999999999999999
Q ss_pred cccCcceeEeecCCcEEEEEcCCCCCcccchhhhhhcccce-eec-cccccCCCcccccccccccccccccccCCccccc
Q 021397 228 RSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKV-LVD-AECTHDGSIKHIQKFENWGWTTLQRRVLDPERTD 305 (313)
Q Consensus 228 r~~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~~-l~d-~e~~~~~~~~~~~~~~~w~~~~~~~~~~~~~r~~ 305 (313)
++ ||+||||||| +.++|||+||++.+++. -+. ++|..+. +.+| .+.+..|++.+...+|+.
T Consensus 362 ~~-----------GGvLVYSTCS-I~~~ENE~vV~yaL~K~p~~kL~p~~~~i---G~~G--~~~~~~~~psl~~~~r~y 424 (460)
T KOG1122|consen 362 KA-----------GGVLVYSTCS-ITVEENEAVVDYALKKRPEVKLVPTGLDI---GGEG--RFRGGRFHPSLKLTRRFY 424 (460)
T ss_pred cC-----------CcEEEEEeee-cchhhhHHHHHHHHHhCCceEeccccccC---CCCC--cccCcccCcchhheeeec
Confidence 76 9999999999 99999999999988875 111 2222222 2222 345555666665555553
No 11
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=7.1e-38 Score=285.68 Aligned_cols=205 Identities=19% Similarity=0.216 Sum_probs=176.2
Q ss_pred EEecC---ChHHHHHHHHHhcCCceEEeccCCCcEEeCC-CCCCcccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEE
Q 021397 42 IRLKT---GNEADLEEIEAELKCKLEKVVWLSGFYSLPP-DIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDL 117 (313)
Q Consensus 42 ~Rvn~---~~~~~~~~L~~~~g~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDl 117 (313)
+|||+ +++++++.|++. |+.+++.. .|+++.+.. ...+..++.|++|++++||.+|++++.++++++|++|||+
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~~~~qd~~s~~~~~~l~~~~g~~VLDl 78 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENR-GVTLIPWC-EEGFFEVNESPLPIGSTPEYLSGLYYIQEASSMIPPLALEPDPPERVLDM 78 (264)
T ss_pred CeecCCCCCHHHHHHHHHhC-CCceeecC-CCceEEEeCCCCCcccChhHhCCeEEEECHHHHHHHHHhCCCCcCEEEEE
Confidence 36664 678888899876 88887754 466776763 3358899999999999999999999999999999999999
Q ss_pred CCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC-------CCCccccc-cccCccccc
Q 021397 118 CAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT-------TFSLAPLR-LLLDPGSCN 189 (313)
Q Consensus 118 cagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~-------~~d~v~~D-~~l~~~s~s 189 (313)
|||||+||+++++++++.+.|+|+|+++.|++.+++|++++|+. ++++++.|+. .||.+++| || |++
T Consensus 79 ~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Vl~D~Pc----sg~ 153 (264)
T TIGR00446 79 AAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDAILLDAPC----SGE 153 (264)
T ss_pred CCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCEEEEcCCC----CCC
Confidence 99999999999999987789999999999999999999999986 6999999974 37788888 88 899
Q ss_pred ccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCCCCCcccchhhhhhcccc
Q 021397 190 SVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDK 267 (313)
Q Consensus 190 g~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~ 267 (313)
|+++++|+.. |.............|.+++..+.+++++ ||+||||||| ++++|||+||.+.+++
T Consensus 154 G~~~~~p~~~--~~~~~~~~~~l~~~q~~iL~~a~~~lkp-----------gG~lvYstcs-~~~~Ene~vv~~~l~~ 217 (264)
T TIGR00446 154 GVIRKDPSRK--KNWSEEDIQEISALQKELIDSAFDALKP-----------GGVLVYSTCS-LEPEENEAVVDYLLEK 217 (264)
T ss_pred cccccChhhh--hcCCHHHHHHHHHHHHHHHHHHHHhcCC-----------CCEEEEEeCC-CChHHHHHHHHHHHHh
Confidence 9999999984 4444455566778899999999998866 9999999999 9999999999766554
No 12
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.4e-31 Score=246.67 Aligned_cols=210 Identities=22% Similarity=0.317 Sum_probs=161.1
Q ss_pred EEeccCCCcEEeCCCC---------CCcccc-----cccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHH
Q 021397 64 EKVVWLSGFYSLPPDI---------KIATSM-----AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129 (313)
Q Consensus 64 ~~~~~~~~~~~l~~~~---------~~~~~~-----~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la 129 (313)
.+.+|.|+.+.+.... .+...+ ...-|.++.||.+||+++.+|+++||++|||||||||+||.++.
T Consensus 95 ~~~p~~p~~~a~~~~~~~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLL 174 (375)
T KOG2198|consen 95 FELPWYPDNLAFEKDVKLDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLL 174 (375)
T ss_pred ccCCCCcccchhhhcCcccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHH
Confidence 4567788776665321 122233 34678999999999999999999999999999999999999998
Q ss_pred HHhCC---CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC----------------CCCccccc-cccCccccc
Q 021397 130 DIIGD---SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT----------------TFSLAPLR-LLLDPGSCN 189 (313)
Q Consensus 130 ~~~~~---~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~----------------~~d~v~~D-~~l~~~s~s 189 (313)
+.+.. .|.|+|+|.+..|+..+++.+++..-. ++.+...|+. .||.|++| || |+.
T Consensus 175 eal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~~~~~~~~fDrVLvDVPC----S~D 249 (375)
T KOG2198|consen 175 EALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDGNDKEQLKFDRVLVDVPC----SGD 249 (375)
T ss_pred HHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-ceeeecccceeccccccccCchhhhhhcceeEEeccc----CCC
Confidence 87742 369999999999999999999777643 5556655553 25566667 67 778
Q ss_pred cccccccccccc-ccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCCCCCcccchhhhhhcccce
Q 021397 190 SVLQEKDDTFRE-WTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKV 268 (313)
Q Consensus 190 g~l~~~p~~~~~-w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs~~~p~Ene~vv~~~~~~~ 268 (313)
|++++++++++. |..... ..+..+|.++|++..+++++ ||+||||||| ++|.|||+||+..+.++
T Consensus 250 gt~rk~~~i~~~~w~~~~~--~~L~~LQ~~iL~rgl~lLk~-----------GG~lVYSTCS-LnpieNEaVV~~~L~~~ 315 (375)
T KOG2198|consen 250 GTLRKNPNIWKEGWKTQRA--LGLHALQLRILRRGLRLLKV-----------GGRLVYSTCS-LNPIENEAVVQEALQKV 315 (375)
T ss_pred cccccCchHhhhhhhhhhc--cCChHHHHHHHHHHHHHhcC-----------CCEEEEeccC-CCchhhHHHHHHHHHHh
Confidence 899999999888 866542 34467899999999999966 9999999999 99999999998777654
Q ss_pred eecccc---ccCC-Cccccccccccccc
Q 021397 269 LVDAEC---THDG-SIKHIQKFENWGWT 292 (313)
Q Consensus 269 l~d~e~---~~~~-~~~~~~~~~~w~~~ 292 (313)
-.+.+. +.+. .+.++++.+.|.--
T Consensus 316 ~~~~~lv~~~~~lp~l~r~~g~t~~~~~ 343 (375)
T KOG2198|consen 316 GGAVELVDVSGDLPGLKRMFGSTGWKVH 343 (375)
T ss_pred cCcccceeeccccccceecCCCCcceEE
Confidence 333332 2222 34578888888743
No 13
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=1.1e-23 Score=194.51 Aligned_cols=209 Identities=21% Similarity=0.228 Sum_probs=153.7
Q ss_pred CCCCeEEEecCCh---HHHHHHHHHhcCC---------ceEEeccCCCcEEeCCCCCCcccccccCCeEEEecHHHHHHH
Q 021397 36 DSTPRYIRLKTGN---EADLEEIEAELKC---------KLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAV 103 (313)
Q Consensus 36 ~~~~~~~Rvn~~~---~~~~~~L~~~~g~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~~~Qd~ss~~~~ 103 (313)
.+.|+|+|+|+.+ ++.+..|..+ +. .+--.++.++.+.++.+..+...+.|+.|.+.+||.+|.+++
T Consensus 128 ~~~pr~vRINtlk~~~~e~~~~L~~e-~~~~~~~l~p~~~~~D~~~~~ll~~~~~n~i~~~~ly~~g~~ilqd~asclpA 206 (413)
T KOG2360|consen 128 IPLPRYVRINTLKGTTDEALDYLDYE-KWKMITELKPDEFYVDPHVENLIIFPPSNFIVEHELYKNGKFILQDKASCLPA 206 (413)
T ss_pred CCCceeEEeecccCchhhhhhhhhhh-hhhhhhhcCCcceeccccchhhcccCCCcceeeccccccCceEEechhhcchh
Confidence 5899999999854 3334444333 22 222344556666666555678899999999999999999999
Q ss_pred HhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC----C----
Q 021397 104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF----S---- 175 (313)
Q Consensus 104 ~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~----d---- 175 (313)
+.|+|.+|..|+|.||+||.||.|+|..+.+.|+|.|.|.+..|.+.+++.++..|.. .++...+|+... +
T Consensus 207 ~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~-~~~~~~~df~~t~~~~~~~~v 285 (413)
T KOG2360|consen 207 HLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVS-IVESVEGDFLNTATPEKFRDV 285 (413)
T ss_pred hhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCC-ccccccccccCCCCcccccce
Confidence 9999999999999999999999999999999999999999999999999999999986 677888887541 1
Q ss_pred -ccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCCCCC
Q 021397 176 -LAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQ 253 (313)
Q Consensus 176 -~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs~~~ 253 (313)
.+++| +| |+||+..+.-...-.=.+........+..|..++.++...-+ --+|+||||| ++
T Consensus 286 ~~iL~Dpsc----SgSgm~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~------------~k~vvystcs-~~ 348 (413)
T KOG2360|consen 286 TYILVDPSC----SGSGMVSRQDEDPGAETESPERLENLQSFQIRILKHALTFPN------------LKRLVYSTCS-LH 348 (413)
T ss_pred eEEEeCCCC----CCCccccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcCCc------------hhheeeecch-hh
Confidence 24455 34 666654433222110111122223447778877777665222 3379999999 99
Q ss_pred cccchhhhhh
Q 021397 254 SVCNSEVSSS 263 (313)
Q Consensus 254 p~Ene~vv~~ 263 (313)
.+|||+||..
T Consensus 349 reene~vv~d 358 (413)
T KOG2360|consen 349 REENEQVVQE 358 (413)
T ss_pred hhhhhHHHHH
Confidence 9999999953
No 14
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.65 E-value=3.2e-16 Score=139.83 Aligned_cols=119 Identities=22% Similarity=0.303 Sum_probs=99.5
Q ss_pred HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccc
Q 021397 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP 178 (313)
Q Consensus 99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~ 178 (313)
-..++..+.+.+|++|||+|||||-.+..+++..+ .++|+++|+|++||+.+++.+...+..+ ++++.+||..+++
T Consensus 40 r~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf-- 115 (238)
T COG2226 40 RRALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPF-- 115 (238)
T ss_pred HHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCC--
Confidence 34566677777999999999999999999999988 7999999999999999999999998874 9999999999984
Q ss_pred cccccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397 179 LRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE 250 (313)
Q Consensus 179 ~D~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs 250 (313)
-|..||.++++..+|+-+++- + ...|+++|+||||+++.-.=+
T Consensus 116 ~D~sFD~vt~~fglrnv~d~~-------------------------~----aL~E~~RVlKpgG~~~vle~~ 158 (238)
T COG2226 116 PDNSFDAVTISFGLRNVTDID-------------------------K----ALKEMYRVLKPGGRLLVLEFS 158 (238)
T ss_pred CCCccCEEEeeehhhcCCCHH-------------------------H----HHHHHHHhhcCCeEEEEEEcC
Confidence 478888889999998887751 1 124788889999966544433
No 15
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.52 E-value=4.6e-14 Score=126.47 Aligned_cols=118 Identities=21% Similarity=0.307 Sum_probs=82.5
Q ss_pred HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR 180 (313)
Q Consensus 101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D 180 (313)
.++..+.+++|.+|||+|||||..+..+++..+..++|+++|+|+.|++.+++++++.+.. +|+++++|++.+++ -|
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~--~d 114 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPF--PD 114 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S---T
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcC--CC
Confidence 4555678899999999999999999999998877789999999999999999999999886 89999999999885 36
Q ss_pred cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397 181 LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE 250 (313)
Q Consensus 181 ~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs 250 (313)
..||.++|+..++.-+|. .+. ..|+++++||||+++.-.-+
T Consensus 115 ~sfD~v~~~fglrn~~d~------------------~~~-----------l~E~~RVLkPGG~l~ile~~ 155 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFPDR------------------ERA-----------LREMYRVLKPGGRLVILEFS 155 (233)
T ss_dssp T-EEEEEEES-GGG-SSH------------------HHH-----------HHHHHHHEEEEEEEEEEEEE
T ss_pred CceeEEEHHhhHHhhCCH------------------HHH-----------HHHHHHHcCCCeEEEEeecc
Confidence 777777999888877763 111 13566677889998876665
No 16
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.49 E-value=4.6e-13 Score=105.60 Aligned_cols=61 Identities=26% Similarity=0.382 Sum_probs=56.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~ 171 (313)
||.+|||+|||+|..+..+++..+ ..+|+|+|+|+.+++.+++++.+.+..++++++++|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFP-GARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHT-TSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 688999999999999999999655 4789999999999999999998788778999999999
No 17
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.48 E-value=4.9e-13 Score=128.51 Aligned_cols=132 Identities=14% Similarity=0.078 Sum_probs=97.5
Q ss_pred cccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-C
Q 021397 84 SMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG-D 162 (313)
Q Consensus 84 ~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~ 162 (313)
..++++|+|..|......+..+. +|.+|||+|||+|+++++++. ++..+|+++|+|+.+++.+++|++.+|+. +
T Consensus 197 ~~g~ktG~flDqr~~R~~~~~~~---~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~ 271 (396)
T PRK15128 197 QGGHKTGYYLDQRDSRLATRRYV---ENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLS 271 (396)
T ss_pred ccccccCcChhhHHHHHHHHHhc---CCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCC
Confidence 46789999999988877766553 588999999999999887664 34458999999999999999999999985 4
Q ss_pred cEEEEecCCC-----------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhcccc
Q 021397 163 RCRLFVADGT-----------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSE 230 (313)
Q Consensus 163 ~v~~~~~D~~-----------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~ 230 (313)
+++++++|+. .||.+++| |.|.. ..........-...+...+.+++++
T Consensus 272 ~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~-------------------~k~~l~~~~~~y~~l~~~a~~lLk~- 331 (396)
T PRK15128 272 KAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVE-------------------NKSQLMGACRGYKDINMLAIQLLNP- 331 (396)
T ss_pred cEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCC-------------------ChHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 7999999973 46777777 44221 0011111122234445556666654
Q ss_pred CcceeEeecCCcEEEEEcCC
Q 021397 231 HPELIFYGRRSGIVGLTKEE 250 (313)
Q Consensus 231 ~~El~~~~k~gG~lvysTcs 250 (313)
||.+++++||
T Consensus 332 ----------gG~lv~~scs 341 (396)
T PRK15128 332 ----------GGILLTFSCS 341 (396)
T ss_pred ----------CeEEEEEeCC
Confidence 9999999998
No 18
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.43 E-value=9.8e-13 Score=125.28 Aligned_cols=132 Identities=20% Similarity=0.172 Sum_probs=106.3
Q ss_pred cccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-C
Q 021397 84 SMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG-D 162 (313)
Q Consensus 84 ~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~ 162 (313)
..+.++|+|..|..+...+...+. |++|||++|-||++|.++|. ++..+|++||+|...++.+++|++.+|+. .
T Consensus 194 ~~g~kTGfFlDqR~~R~~l~~~~~---GkrvLNlFsYTGgfSv~Aa~--gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~ 268 (393)
T COG1092 194 VDGLKTGFFLDQRDNRRALGELAA---GKRVLNLFSYTGGFSVHAAL--GGASEVTSVDLSKRALEWARENAELNGLDGD 268 (393)
T ss_pred CCcccceeeHHhHHHHHHHhhhcc---CCeEEEecccCcHHHHHHHh--cCCCceEEEeccHHHHHHHHHHHHhcCCCcc
Confidence 347799999999999988887763 99999999999999999986 34459999999999999999999999985 4
Q ss_pred cEEEEecCC-----------CCCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhcccc
Q 021397 163 RCRLFVADG-----------TTFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSE 230 (313)
Q Consensus 163 ~v~~~~~D~-----------~~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~ 230 (313)
++.++++|+ ..||.|++| |.|. ++++ ......+-...++..+.++++|
T Consensus 269 ~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~---------r~k~----------~~~~~~rdy~~l~~~~~~iL~p- 328 (393)
T COG1092 269 RHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFA---------RSKK----------QEFSAQRDYKDLNDLALRLLAP- 328 (393)
T ss_pred ceeeehhhHHHHHHHHHhcCCcccEEEECCcccc---------cCcc----------cchhHHHHHHHHHHHHHHHcCC-
Confidence 588999997 369999999 5532 2222 2223345556677778888766
Q ss_pred CcceeEeecCCcEEEEEcCC
Q 021397 231 HPELIFYGRRSGIVGLTKEE 250 (313)
Q Consensus 231 ~~El~~~~k~gG~lvysTcs 250 (313)
||+++.|||+
T Consensus 329 ----------gG~l~~~s~~ 338 (393)
T COG1092 329 ----------GGTLVTSSCS 338 (393)
T ss_pred ----------CCEEEEEecC
Confidence 9999999998
No 19
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.33 E-value=1.5e-11 Score=104.91 Aligned_cols=75 Identities=17% Similarity=0.269 Sum_probs=67.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
+-..+....|.|+||+.++|+|||+|+.|..++ ++++.++|+|+|.++++++..++|++++|++ |++++.+|+-.
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~Ap~ 95 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDAPE 95 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccchH
Confidence 344556678899999999999999999999999 6777899999999999999999999999975 89999999854
No 20
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.33 E-value=3.9e-12 Score=112.61 Aligned_cols=132 Identities=20% Similarity=0.135 Sum_probs=99.0
Q ss_pred HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCC-----cEEEEEcCCHHHHHHHHHHHHHcCCCCc--EEEEecCCCC
Q 021397 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDS-----GSVTGVDVARHRLAACRTLLQKYALGDR--CRLFVADGTT 173 (313)
Q Consensus 101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~-----~~V~avD~s~~~l~~~~~~~~~~g~~~~--v~~~~~D~~~ 173 (313)
..+..|+|.+|+++||+|+|+|-.|+-+.+..+.. ++|+.+|+|++||..++++.++.++..+ +.++.+||+.
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 45677889999999999999999999999998753 7999999999999999999988887655 8999999998
Q ss_pred CCccccccccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCCCCC
Q 021397 174 FSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEIYQ 253 (313)
Q Consensus 174 ~d~v~~D~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs~~~ 253 (313)
+++ -|..+|.-+.++.+|.-+++. + ...|.|+|+||||+.. |=-|+
T Consensus 171 LpF--dd~s~D~yTiafGIRN~th~~-----------------k------------~l~EAYRVLKpGGrf~---cLeFs 216 (296)
T KOG1540|consen 171 LPF--DDDSFDAYTIAFGIRNVTHIQ-----------------K------------ALREAYRVLKPGGRFS---CLEFS 216 (296)
T ss_pred CCC--CCCcceeEEEecceecCCCHH-----------------H------------HHHHHHHhcCCCcEEE---EEEcc
Confidence 873 134455556677777666541 1 1235677888999776 75244
Q ss_pred cccchhhhhhcccc
Q 021397 254 SVCNSEVSSSGYDK 267 (313)
Q Consensus 254 p~Ene~vv~~~~~~ 267 (313)
..||+ .+.+++|.
T Consensus 217 kv~~~-~l~~fy~~ 229 (296)
T KOG1540|consen 217 KVENE-PLKWFYDQ 229 (296)
T ss_pred ccccH-HHHHHHHh
Confidence 44554 44444443
No 21
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.33 E-value=1e-11 Score=114.06 Aligned_cols=131 Identities=16% Similarity=0.150 Sum_probs=94.7
Q ss_pred cccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397 82 ATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG 161 (313)
Q Consensus 82 ~~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~ 161 (313)
.-..+.++|+|..|.+...++.... .|.+|||++|-+|++|.+++. ++..+|++||.|...++.+++|++.+|+.
T Consensus 98 ~l~~gqktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~ 172 (286)
T PF10672_consen 98 DLTDGQKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLD 172 (286)
T ss_dssp ESSSSSSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-C
T ss_pred EcCCCCcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 3446789999999999999887764 588999999999999998775 34458999999999999999999999975
Q ss_pred -CcEEEEecCCC----------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccc
Q 021397 162 -DRCRLFVADGT----------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRS 229 (313)
Q Consensus 162 -~~v~~~~~D~~----------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~ 229 (313)
++++++..|+. .||.|.+| |.|. +. .|. ..+-..+++..+.+++++
T Consensus 173 ~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~---------k~-----~~~--------~~~~y~~L~~~a~~ll~~ 230 (286)
T PF10672_consen 173 LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFA---------KS-----KFD--------LERDYKKLLRRAMKLLKP 230 (286)
T ss_dssp CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEE---------SS-----TCE--------HHHHHHHHHHHHHHTEEE
T ss_pred ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCC---------CC-----HHH--------HHHHHHHHHHHHHHhcCC
Confidence 57899999973 57888888 5542 00 111 112344566677777765
Q ss_pred cCcceeEeecCCcEEEEEcCC
Q 021397 230 EHPELIFYGRRSGIVGLTKEE 250 (313)
Q Consensus 230 ~~~El~~~~k~gG~lvysTcs 250 (313)
||.|+.+|||
T Consensus 231 -----------gG~l~~~scs 240 (286)
T PF10672_consen 231 -----------GGLLLTCSCS 240 (286)
T ss_dssp -----------EEEEEEEE--
T ss_pred -----------CCEEEEEcCC
Confidence 9999999999
No 22
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.31 E-value=3.2e-11 Score=109.99 Aligned_cols=119 Identities=21% Similarity=0.254 Sum_probs=86.4
Q ss_pred HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH--cCCCCcEEEEecCCCCCCccc
Q 021397 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK--YALGDRCRLFVADGTTFSLAP 178 (313)
Q Consensus 101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~--~g~~~~v~~~~~D~~~~d~v~ 178 (313)
.+...+.++++++|||+|||+|..+..+++..+..+.|+|+|+|+.|++.++++... .+...+++++++|+..+++
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~-- 141 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF-- 141 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC--
Confidence 345567788899999999999999999998876567999999999999999877542 1222379999999988764
Q ss_pred cccccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397 179 LRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE 250 (313)
Q Consensus 179 ~D~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs 250 (313)
.|..||.+.++.++++-++. .+.+. |++.++||||+++..+.+
T Consensus 142 ~~~sfD~V~~~~~l~~~~d~------------------~~~l~-----------ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 142 DDCYFDAITMGYGLRNVVDR------------------LKAMQ-----------EMYRVLKPGSRVSILDFN 184 (261)
T ss_pred CCCCEeEEEEecccccCCCH------------------HHHHH-----------HHHHHcCcCcEEEEEECC
Confidence 24456655777666554432 11122 233345679999998876
No 23
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.30 E-value=3.2e-11 Score=106.13 Aligned_cols=74 Identities=12% Similarity=0.238 Sum_probs=66.1
Q ss_pred HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
......++++++++|||+|||+|..+..+++.++..++|+++|+++.+++.+++|+++.++.++++++.+|+..
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCccc
Confidence 44566788899999999999999999999998876689999999999999999999999986679999999864
No 24
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.29 E-value=2.8e-11 Score=105.86 Aligned_cols=75 Identities=21% Similarity=0.350 Sum_probs=65.5
Q ss_pred HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
..++...+++.++++|||+|||+|..+..++..++..++|+++|+++.+++.+++|++++++.+++.++.+|+..
T Consensus 29 r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~ 103 (198)
T PRK00377 29 RALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPE 103 (198)
T ss_pred HHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhh
Confidence 344455678999999999999999999999988776689999999999999999999999965689999999865
No 25
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.29 E-value=3.3e-11 Score=124.03 Aligned_cols=135 Identities=17% Similarity=0.157 Sum_probs=99.9
Q ss_pred ccccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-
Q 021397 83 TSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG- 161 (313)
Q Consensus 83 ~~~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~- 161 (313)
-....++|+|..|.....++.... +|.+|||+|||+|+++++++.. +..+|+++|+|+.+++.+++|++.+|+.
T Consensus 514 ~~~~~~tG~flDqr~~R~~~~~~~---~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~ 588 (702)
T PRK11783 514 LTDYLDTGLFLDHRPTRRMIGQMA---KGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSG 588 (702)
T ss_pred cCCCCcceECHHHHHHHHHHHHhc---CCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 345678999999998888777654 5889999999999999999974 3357999999999999999999999985
Q ss_pred CcEEEEecCCC--------CCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCc
Q 021397 162 DRCRLFVADGT--------TFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHP 232 (313)
Q Consensus 162 ~~v~~~~~D~~--------~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~ 232 (313)
++++++++|+. .||.|.+| |.|.. + ....+ .| ........++..+.+++++
T Consensus 589 ~~v~~i~~D~~~~l~~~~~~fDlIilDPP~f~~----~--~~~~~---~~--------~~~~~y~~l~~~a~~lL~~--- 648 (702)
T PRK11783 589 RQHRLIQADCLAWLKEAREQFDLIFIDPPTFSN----S--KRMED---SF--------DVQRDHVALIKDAKRLLRP--- 648 (702)
T ss_pred cceEEEEccHHHHHHHcCCCcCEEEECCCCCCC----C--Cccch---hh--------hHHHHHHHHHHHHHHHcCC---
Confidence 57999999962 57888888 44320 0 00000 11 1122344455556666654
Q ss_pred ceeEeecCCcEEEEEcCC
Q 021397 233 ELIFYGRRSGIVGLTKEE 250 (313)
Q Consensus 233 El~~~~k~gG~lvysTcs 250 (313)
||++++++|+
T Consensus 649 --------gG~l~~~~~~ 658 (702)
T PRK11783 649 --------GGTLYFSNNK 658 (702)
T ss_pred --------CCEEEEEeCC
Confidence 9999999998
No 26
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.28 E-value=4.2e-11 Score=100.07 Aligned_cols=83 Identities=18% Similarity=0.272 Sum_probs=67.1
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccc
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSC 188 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~ 188 (313)
+.+.+|||+|||+|..+..+++..+..++++++|+|+.+++.+++++++.++. +++++++|+.+++.. +...||.+.+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~-~~~~~D~I~~ 79 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQE-LEEKFDIIIS 79 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGC-SSTTEEEEEE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccc-cCCCeeEEEE
Confidence 56889999999999999999976655689999999999999999999999997 899999999887632 1134444466
Q ss_pred ccccc
Q 021397 189 NSVLQ 193 (313)
Q Consensus 189 sg~l~ 193 (313)
.+++.
T Consensus 80 ~~~l~ 84 (152)
T PF13847_consen 80 NGVLH 84 (152)
T ss_dssp ESTGG
T ss_pred cCchh
Confidence 66653
No 27
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.28 E-value=5.1e-11 Score=105.39 Aligned_cols=83 Identities=20% Similarity=0.361 Sum_probs=71.5
Q ss_pred CeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 021397 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA 169 (313)
Q Consensus 90 G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~ 169 (313)
|....+..-...+...+++++|++|||+|||+|+.|..+++..+..++|+++|+++.+++.++++++++|+. +++++.+
T Consensus 56 g~~~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~g 134 (212)
T PRK13942 56 GQTISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVG 134 (212)
T ss_pred CCEeCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEEC
Confidence 444445555566777889999999999999999999999998876689999999999999999999999985 7999999
Q ss_pred CCCC
Q 021397 170 DGTT 173 (313)
Q Consensus 170 D~~~ 173 (313)
|+..
T Consensus 135 d~~~ 138 (212)
T PRK13942 135 DGTL 138 (212)
T ss_pred Cccc
Confidence 9864
No 28
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.28 E-value=6.9e-11 Score=105.40 Aligned_cols=92 Identities=18% Similarity=0.303 Sum_probs=73.2
Q ss_pred HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL 179 (313)
Q Consensus 100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~ 179 (313)
......+.+++|++|||+|||+|..+..+++..+..+.|+++|+++.+++.+++++++.++. +++++.+|+..++. .
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~--~ 111 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNAMELPF--D 111 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEechhcCCC--C
Confidence 44556778889999999999999999999998766689999999999999999999888874 79999999977653 1
Q ss_pred ccccCcccccccccc
Q 021397 180 RLLLDPGSCNSVLQE 194 (313)
Q Consensus 180 D~~l~~~s~sg~l~~ 194 (313)
+..||.+.+...++.
T Consensus 112 ~~~fD~V~~~~~l~~ 126 (231)
T TIGR02752 112 DNSFDYVTIGFGLRN 126 (231)
T ss_pred CCCccEEEEeccccc
Confidence 234444444444443
No 29
>PLN02244 tocopherol O-methyltransferase
Probab=99.25 E-value=8.5e-11 Score=111.21 Aligned_cols=92 Identities=14% Similarity=0.137 Sum_probs=73.7
Q ss_pred HHHhcCC-----CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397 102 AVSALNI-----SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 102 ~~~~l~~-----~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
+...+.+ +++++|||+|||+|+.+..+++.. ...|+|+|+|+.+++.++++++..++.++++++.+|+..+++
T Consensus 105 ~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~ 182 (340)
T PLN02244 105 SLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF 182 (340)
T ss_pred HHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC
Confidence 4445555 678999999999999999999876 368999999999999999999998887789999999987654
Q ss_pred cccccccCccccccccccccc
Q 021397 177 APLRLLLDPGSCNSVLQEKDD 197 (313)
Q Consensus 177 v~~D~~l~~~s~sg~l~~~p~ 197 (313)
.|..||.+.+...+.+.++
T Consensus 183 --~~~~FD~V~s~~~~~h~~d 201 (340)
T PLN02244 183 --EDGQFDLVWSMESGEHMPD 201 (340)
T ss_pred --CCCCccEEEECCchhccCC
Confidence 2455666566666655554
No 30
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.25 E-value=6.7e-11 Score=106.50 Aligned_cols=83 Identities=20% Similarity=0.310 Sum_probs=66.2
Q ss_pred cCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 021397 88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167 (313)
Q Consensus 88 ~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~ 167 (313)
....+|.-|.+ ++...+++.||++||+.|.|+|+.|..++..+++.|+|+..|+++.+.+.+++|++++|+.+++++.
T Consensus 20 rtQIiYpkD~~--~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~ 97 (247)
T PF08704_consen 20 RTQIIYPKDIS--YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVH 97 (247)
T ss_dssp SS----HHHHH--HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEE
T ss_pred CcceeeCchHH--HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeE
Confidence 34456665654 5667899999999999999999999999999999999999999999999999999999998899999
Q ss_pred ecCCC
Q 021397 168 VADGT 172 (313)
Q Consensus 168 ~~D~~ 172 (313)
+.|..
T Consensus 98 ~~Dv~ 102 (247)
T PF08704_consen 98 HRDVC 102 (247)
T ss_dssp ES-GG
T ss_pred eccee
Confidence 99985
No 31
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=7.6e-11 Score=104.93 Aligned_cols=89 Identities=26% Similarity=0.370 Sum_probs=77.8
Q ss_pred ccccCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcE
Q 021397 85 MAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRC 164 (313)
Q Consensus 85 ~~~~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v 164 (313)
..|+.+--.+--+.|.+++..+++.||++|||.|.|+|..|..||...++.|+|+..|+.+..++.|++|++..|+.+++
T Consensus 69 ~~~~R~tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v 148 (256)
T COG2519 69 LSMKRRTQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRV 148 (256)
T ss_pred HhCcCCCceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccce
Confidence 34665555555555667888999999999999999999999999999998999999999999999999999999998779
Q ss_pred EEEecCCCC
Q 021397 165 RLFVADGTT 173 (313)
Q Consensus 165 ~~~~~D~~~ 173 (313)
.+..+|...
T Consensus 149 ~~~~~Dv~~ 157 (256)
T COG2519 149 TLKLGDVRE 157 (256)
T ss_pred EEEeccccc
Confidence 999999864
No 32
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.23 E-value=1.1e-10 Score=103.24 Aligned_cols=74 Identities=22% Similarity=0.380 Sum_probs=66.2
Q ss_pred HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
...+..++++++|++|||+|||+|..+..+++..+..++|+++|+++.+++.++++++++|+. +++++.+|+..
T Consensus 66 ~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~~~ 139 (215)
T TIGR00080 66 VAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDGTQ 139 (215)
T ss_pred HHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCccc
Confidence 345667788999999999999999999999998776688999999999999999999999985 79999999854
No 33
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.22 E-value=8.4e-11 Score=100.40 Aligned_cols=75 Identities=21% Similarity=0.236 Sum_probs=66.8
Q ss_pred cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 96 d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
|.++.+++..+...++.+|||+|||+|..++.+++..+ ..+|+++|+++.+++.+++|++.+++.+ ++++..|..
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~-~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~ 91 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRGP-DAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLF 91 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTST-CEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTT
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccc
Confidence 67888888888776889999999999999999998754 3579999999999999999999999974 999999974
No 34
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.20 E-value=1.1e-10 Score=106.94 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=69.2
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcc
Q 021397 98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA 177 (313)
Q Consensus 98 ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v 177 (313)
.-..++..++++||++|||+|||.|+.+..+++..+ .+|+++.+|+...+.+++.+++.|+.+++++...|...++.
T Consensus 50 k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~- 126 (273)
T PF02353_consen 50 KLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG- 126 (273)
T ss_dssp HHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC-
Confidence 344677888999999999999999999999999874 69999999999999999999999998899999999877655
Q ss_pred ccccccCcccccccccccc
Q 021397 178 PLRLLLDPGSCNSVLQEKD 196 (313)
Q Consensus 178 ~~D~~l~~~s~sg~l~~~p 196 (313)
.+|. +.+.|++.+-+
T Consensus 127 ~fD~----IvSi~~~Ehvg 141 (273)
T PF02353_consen 127 KFDR----IVSIEMFEHVG 141 (273)
T ss_dssp S-SE----EEEESEGGGTC
T ss_pred CCCE----EEEEechhhcC
Confidence 4444 37778776653
No 35
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.19 E-value=2e-10 Score=100.22 Aligned_cols=82 Identities=11% Similarity=0.118 Sum_probs=71.7
Q ss_pred CeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 021397 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA 169 (313)
Q Consensus 90 G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~ 169 (313)
|.-..|.+..+++...++++++++|||+|||+|..+..+++..+ .+.|+++|+|+.+++.+++|++++++. +++++.+
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~-~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~ 97 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCP-KGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEG 97 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEEC
Confidence 44466788888888889999999999999999999999987654 479999999999999999999999985 7999999
Q ss_pred CCCC
Q 021397 170 DGTT 173 (313)
Q Consensus 170 D~~~ 173 (313)
|+..
T Consensus 98 d~~~ 101 (196)
T PRK07402 98 SAPE 101 (196)
T ss_pred chHH
Confidence 9854
No 36
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.19 E-value=6e-11 Score=94.26 Aligned_cols=61 Identities=33% Similarity=0.440 Sum_probs=55.7
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
|.+|||+|||+|..+..+++.. ..+++++|+++..++.+++++...++.++++++++|+..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~ 61 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARD 61 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHH
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhh
Confidence 6799999999999999999875 479999999999999999999999987789999999853
No 37
>PRK14967 putative methyltransferase; Provisional
Probab=99.17 E-value=3.7e-10 Score=100.52 Aligned_cols=87 Identities=24% Similarity=0.309 Sum_probs=66.6
Q ss_pred CeEEEecHHHHHHHHh---cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 021397 90 GKIYGIDAASGAAVSA---LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRL 166 (313)
Q Consensus 90 G~~~~Qd~ss~~~~~~---l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~ 166 (313)
|.|..|..+ .+++.. +.++++++|||+|||+|..+..++.. + ..+|+++|+++.+++.+++|++..++ ++++
T Consensus 14 g~~~p~~ds-~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~-~-~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~ 88 (223)
T PRK14967 14 GVYRPQEDT-QLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA-G-AGSVTAVDISRRAVRSARLNALLAGV--DVDV 88 (223)
T ss_pred CCcCCCCcH-HHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHhCC--eeEE
Confidence 555666544 344433 34678899999999999999998875 3 35899999999999999999999887 5888
Q ss_pred EecCCC------CCCcccccc
Q 021397 167 FVADGT------TFSLAPLRL 181 (313)
Q Consensus 167 ~~~D~~------~~d~v~~D~ 181 (313)
+.+|.. .||.+..||
T Consensus 89 ~~~d~~~~~~~~~fD~Vi~np 109 (223)
T PRK14967 89 RRGDWARAVEFRPFDVVVSNP 109 (223)
T ss_pred EECchhhhccCCCeeEEEECC
Confidence 888874 355555553
No 38
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.17 E-value=1.6e-10 Score=103.40 Aligned_cols=86 Identities=16% Similarity=0.196 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC-----
Q 021397 98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT----- 172 (313)
Q Consensus 98 ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~----- 172 (313)
.|++++.+..+....+|||+|||.|..++.+|++..+ .+|++||+++.+.+.|++|++.+++.++|+++++|..
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~ 110 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA 110 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence 4788888888888999999999999999999998765 8999999999999999999999999999999999984
Q ss_pred ----CCCccccc-cccC
Q 021397 173 ----TFSLAPLR-LLLD 184 (313)
Q Consensus 173 ----~~d~v~~D-~~l~ 184 (313)
.||.|..+ |-|.
T Consensus 111 ~~~~~fD~Ii~NPPyf~ 127 (248)
T COG4123 111 LVFASFDLIICNPPYFK 127 (248)
T ss_pred ccccccCEEEeCCCCCC
Confidence 36677777 4433
No 39
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.17 E-value=3.6e-10 Score=103.45 Aligned_cols=87 Identities=22% Similarity=0.286 Sum_probs=68.7
Q ss_pred hcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccC
Q 021397 105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD 184 (313)
Q Consensus 105 ~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~ 184 (313)
...+++|++|||+|||+|..+..+++.++..++|+++|+++.+++.++++.+..++. +++++.+|+..+++ .+..||
T Consensus 72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~~~l~~--~~~~fD 148 (272)
T PRK11873 72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEIEALPV--ADNSVD 148 (272)
T ss_pred hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcchhhCCC--CCCcee
Confidence 346789999999999999999988888877679999999999999999999999985 79999999876553 123344
Q ss_pred cccccccccc
Q 021397 185 PGSCNSVLQE 194 (313)
Q Consensus 185 ~~s~sg~l~~ 194 (313)
.+.+..++..
T Consensus 149 ~Vi~~~v~~~ 158 (272)
T PRK11873 149 VIISNCVINL 158 (272)
T ss_pred EEEEcCcccC
Confidence 4444444433
No 40
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.14 E-value=2.9e-10 Score=98.18 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=56.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+|.+|||+|||+|..+..++... +.++|+|+|+|+.+++.++++++++++. +++++++|+..+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~ 104 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDF 104 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhc
Confidence 48899999999999999998754 3478999999999999999999999985 699999999875
No 41
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.14 E-value=4.3e-10 Score=101.70 Aligned_cols=69 Identities=19% Similarity=0.315 Sum_probs=59.9
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
+.++.+|||+|||+|..+..+++.+ .+.++|+|+|+|+.|++.+++++++++...+++++++|+..++.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~ 123 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI 123 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC
Confidence 4578899999999999999998864 34579999999999999999999998876689999999877654
No 42
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.13 E-value=5.6e-10 Score=101.75 Aligned_cols=95 Identities=17% Similarity=0.193 Sum_probs=80.0
Q ss_pred ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
|-..-..++..+.++||++|||+|||.|+.+..+|+..+ .+|+|+++|+++.+.+++.++..|+.+++++...|-+.+
T Consensus 57 Q~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~ 134 (283)
T COG2230 57 QRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF 134 (283)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc
Confidence 334445577788999999999999999999999999873 799999999999999999999999988899999998876
Q ss_pred CccccccccCcccccccccccc
Q 021397 175 SLAPLRLLLDPGSCNSVLQEKD 196 (313)
Q Consensus 175 d~v~~D~~l~~~s~sg~l~~~p 196 (313)
+-- +| .++..|++.+-.
T Consensus 135 ~e~-fD----rIvSvgmfEhvg 151 (283)
T COG2230 135 EEP-FD----RIVSVGMFEHVG 151 (283)
T ss_pred ccc-cc----eeeehhhHHHhC
Confidence 643 44 448888876654
No 43
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.13 E-value=3.6e-10 Score=99.64 Aligned_cols=83 Identities=20% Similarity=0.418 Sum_probs=66.7
Q ss_pred CeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 021397 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA 169 (313)
Q Consensus 90 G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~ 169 (313)
|....|-.--..+.++|+++||++|||+|||+|+.|..++.+.+..+.|+++|+++..++.+++++++++.. ||.++.+
T Consensus 52 ~~~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-nv~~~~g 130 (209)
T PF01135_consen 52 GQTISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGID-NVEVVVG 130 (209)
T ss_dssp TEEE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTH-SEEEEES
T ss_pred eeechHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccC-ceeEEEc
Confidence 444434333344667889999999999999999999999999988889999999999999999999999996 7999999
Q ss_pred CCCC
Q 021397 170 DGTT 173 (313)
Q Consensus 170 D~~~ 173 (313)
|+..
T Consensus 131 dg~~ 134 (209)
T PF01135_consen 131 DGSE 134 (209)
T ss_dssp -GGG
T ss_pred chhh
Confidence 9854
No 44
>PRK04266 fibrillarin; Provisional
Probab=99.13 E-value=5.8e-10 Score=99.56 Aligned_cols=73 Identities=23% Similarity=0.290 Sum_probs=60.9
Q ss_pred HHHHHHHHh--cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 97 AASGAAVSA--LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 97 ~ss~~~~~~--l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
.++.+++.+ +++++|++|||+|||+|.++.++++.++ .+.|+|+|+++.|++.+.+++++. .|+.++.+|+..
T Consensus 57 ~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~ 131 (226)
T PRK04266 57 LAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARK 131 (226)
T ss_pred hHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCC
Confidence 334444433 8899999999999999999999999886 689999999999999888887654 368999999864
No 45
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.13 E-value=4.6e-10 Score=103.63 Aligned_cols=72 Identities=22% Similarity=0.306 Sum_probs=62.1
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC------CCCccccc
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT------TFSLAPLR 180 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~------~~d~v~~D 180 (313)
++++.+|||+|||+|..+..+++..+ ..+|+|+|+|+.+++.+++|++++++.++++++++|+. .||.+..|
T Consensus 119 ~~~~~~vLDlG~GsG~i~~~la~~~~-~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 119 PEPVKRILDLCTGSGCIAIACAYAFP-EAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSN 196 (284)
T ss_pred cCCCCEEEEEeCchhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEEC
Confidence 44567999999999999999998765 47999999999999999999999998767999999973 36666677
No 46
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=5.8e-10 Score=97.18 Aligned_cols=81 Identities=16% Similarity=0.311 Sum_probs=70.9
Q ss_pred CCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 021397 89 QGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168 (313)
Q Consensus 89 ~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~ 168 (313)
.|.+.-|-.--....++|++++|++||++|||+|+.|..||++. ++|+++|+.+...+.+++|++.+|+. ||.+++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~ 126 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYE-NVTVRH 126 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEE
Confidence 46655555445567788999999999999999999999999986 48999999999999999999999997 699999
Q ss_pred cCCCC
Q 021397 169 ADGTT 173 (313)
Q Consensus 169 ~D~~~ 173 (313)
+|+..
T Consensus 127 gDG~~ 131 (209)
T COG2518 127 GDGSK 131 (209)
T ss_pred CCccc
Confidence 99954
No 47
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.13 E-value=7e-10 Score=95.99 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=66.9
Q ss_pred EEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 93 ~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
..++.....+...+++.++.+|||+|||+|..+..+++..+ .++|+++|+++.+++.+++|++++++. +++++.+|+.
T Consensus 14 ~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~~ 91 (187)
T PRK08287 14 MTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFP-SLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEAP 91 (187)
T ss_pred CchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCch
Confidence 34555566677788888999999999999999999998754 479999999999999999999999885 6999998874
No 48
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.12 E-value=7.9e-10 Score=94.97 Aligned_cols=79 Identities=14% Similarity=0.077 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC---
Q 021397 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT--- 173 (313)
Q Consensus 97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~--- 173 (313)
..+.++...+...++.+|||+|||+|..+..+++.. .+|+++|+|+.+++.+++|++..+. +++++.+|...
T Consensus 6 ~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~ 80 (179)
T TIGR00537 6 EDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGVR 80 (179)
T ss_pred ccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEcccccccC
Confidence 345666677777778899999999999999999852 3899999999999999999998886 58888888743
Q ss_pred --CCccccc
Q 021397 174 --FSLAPLR 180 (313)
Q Consensus 174 --~d~v~~D 180 (313)
||.+..+
T Consensus 81 ~~fD~Vi~n 89 (179)
T TIGR00537 81 GKFDVILFN 89 (179)
T ss_pred CcccEEEEC
Confidence 4555555
No 49
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.12 E-value=8e-10 Score=99.23 Aligned_cols=77 Identities=12% Similarity=0.204 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
...+++..++...++.+|||+|||+|+-++.++..++..++|+++|+++++++.+++|+++.|+.++++++.+|+..
T Consensus 55 ~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~ 131 (234)
T PLN02781 55 DEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS 131 (234)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH
Confidence 34556666666677889999999999999999998877789999999999999999999999998889999999843
No 50
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.11 E-value=8.4e-10 Score=96.46 Aligned_cols=88 Identities=17% Similarity=0.093 Sum_probs=70.0
Q ss_pred HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccc
Q 021397 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP 178 (313)
Q Consensus 99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~ 178 (313)
+..+...+...++.+|||+|||+|..+..+++. ..+|+|+|+|+.+++.++++++..++. ++++...|...++.
T Consensus 19 ~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~~~-- 92 (197)
T PRK11207 19 HSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDLNNLTF-- 92 (197)
T ss_pred hHHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecChhhCCc--
Confidence 345566677778899999999999999999985 358999999999999999999988885 68899999876543
Q ss_pred cccccCccccccccc
Q 021397 179 LRLLLDPGSCNSVLQ 193 (313)
Q Consensus 179 ~D~~l~~~s~sg~l~ 193 (313)
+..||.+.|+++++
T Consensus 93 -~~~fD~I~~~~~~~ 106 (197)
T PRK11207 93 -DGEYDFILSTVVLM 106 (197)
T ss_pred -CCCcCEEEEecchh
Confidence 33355556766653
No 51
>PLN02476 O-methyltransferase
Probab=99.09 E-value=1.4e-09 Score=99.44 Aligned_cols=82 Identities=6% Similarity=0.105 Sum_probs=73.0
Q ss_pred eEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecC
Q 021397 91 KIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD 170 (313)
Q Consensus 91 ~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D 170 (313)
...+.....++...++...+..+|||+|++.|+.|+++|..+++.|+|+++|.++++.+.+++++++.|+.++|+++.+|
T Consensus 99 ~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~Gd 178 (278)
T PLN02476 99 QMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGL 178 (278)
T ss_pred ccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcC
Confidence 34556666777777777788899999999999999999999887889999999999999999999999998899999999
Q ss_pred CC
Q 021397 171 GT 172 (313)
Q Consensus 171 ~~ 172 (313)
+.
T Consensus 179 A~ 180 (278)
T PLN02476 179 AA 180 (278)
T ss_pred HH
Confidence 73
No 52
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.08 E-value=1e-09 Score=95.20 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=58.5
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
+++.+|||+|||+|..+..++...+ .++|+++|+++.+++.+++++++.++. +++++.+|+..++.
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~-~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~ 109 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARP-ELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQ 109 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCC-CCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCC
Confidence 3589999999999999999998654 479999999999999999999999986 59999999977553
No 53
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.08 E-value=2.3e-09 Score=85.51 Aligned_cols=70 Identities=16% Similarity=0.286 Sum_probs=61.2
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
+...+.+.++++|||+|||+|..+..+++..++ ++|+++|+|+.+++.++++++.+++. +++++.+|+..
T Consensus 11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ 80 (124)
T TIGR02469 11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPE 80 (124)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccc
Confidence 445667778899999999999999999998764 79999999999999999999999886 68998888753
No 54
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.08 E-value=1.3e-09 Score=102.62 Aligned_cols=72 Identities=26% Similarity=0.342 Sum_probs=60.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
...+.++++++|+.|||.|||+|+.+..++.. ...|+|+|+++.|++.+++|++.+|+.+ +.+..+|+..++
T Consensus 172 ~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~ 243 (329)
T TIGR01177 172 RAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLP 243 (329)
T ss_pred HHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCC
Confidence 33445667889999999999999998876653 3689999999999999999999999974 889999987543
No 55
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.07 E-value=1.2e-09 Score=99.15 Aligned_cols=119 Identities=14% Similarity=0.143 Sum_probs=80.5
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC---------CCCccccc-
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT---------TFSLAPLR- 180 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~---------~~d~v~~D- 180 (313)
+.+|||+|||+|..++.+++..+. .+|+|+|+|+.+++.+++|++.++. +++++|.. .||.+.+|
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~~----~~~~~D~~~~l~~~~~~~fDlVv~NP 161 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAGG----TVHEGDLYDALPTALRGRVDILAANA 161 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCC----EEEEeechhhcchhcCCCEeEEEECC
Confidence 468999999999999999987653 5899999999999999999988763 56777753 36777777
Q ss_pred cccCcccccccccc-cccccccccccchh--HHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397 181 LLLDPGSCNSVLQE-KDDTFREWTSRIPW--KERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE 250 (313)
Q Consensus 181 ~~l~~~s~sg~l~~-~p~~~~~w~~~~~~--~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs 250 (313)
|+ ...+.+.. .|+. +.+.+...- .......+..++..+.+.+++ ||.+++.+..
T Consensus 162 Py----~~~~~~~~~~~e~-~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~-----------gG~l~l~~~~ 218 (251)
T TIGR03704 162 PY----VPTDAIALMPPEA-RDHEPRVALDGGADGLDVLRRVAAGAPDWLAP-----------GGHLLVETSE 218 (251)
T ss_pred CC----CCchhhhcCCHHH-HhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC-----------CCEEEEEECc
Confidence 55 22232222 2332 111111100 012345566677777777755 9999999876
No 56
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.07 E-value=1.4e-09 Score=101.46 Aligned_cols=70 Identities=23% Similarity=0.309 Sum_probs=60.7
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC------CCCcccccc
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT------TFSLAPLRL 181 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~------~~d~v~~D~ 181 (313)
..+|||+|||+|..+..++...+ ..+|+|+|+|+.+++.+++|++++++.++++++++|+. .||.+..||
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p-~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNP 209 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFP-DAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNP 209 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECC
Confidence 36899999999999999998764 47899999999999999999999998767999999963 367777773
No 57
>PTZ00146 fibrillarin; Provisional
Probab=99.06 E-value=1.5e-09 Score=99.68 Aligned_cols=65 Identities=23% Similarity=0.343 Sum_probs=54.8
Q ss_pred cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
+.+++|++|||+|||||++|.++++.+++.+.|+|+|+++.+++.+.+.+++. .||.++..|++.
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~ 192 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARY 192 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccC
Confidence 56789999999999999999999999987899999999988776666555432 368899999864
No 58
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.04 E-value=2.7e-09 Score=95.85 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=59.5
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
+.++.+|||+|||+|..+..+++... +.++|+++|+|+.|++.++++++..+...+++++++|+..++.
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 120 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI 120 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC
Confidence 35788999999999999999998753 3579999999999999999999887765579999999987664
No 59
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.04 E-value=9.2e-10 Score=96.62 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=56.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC-CCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG-TTFS 175 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~-~~~d 175 (313)
++.+|||+|||+|..+..+++..+ ...|+|+|+|+.+++.++++++..++. ++.++++|+ ..++
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p-~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~~~~l~ 104 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANP-DINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDAVEVLL 104 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCC-CccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCHHHHHH
Confidence 578999999999999999998765 368999999999999999999998884 799999998 5443
No 60
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.03 E-value=3.4e-09 Score=97.81 Aligned_cols=124 Identities=12% Similarity=0.103 Sum_probs=83.4
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC------CCCccccccccC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT------TFSLAPLRLLLD 184 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~------~~d~v~~D~~l~ 184 (313)
+.+|||+|||+|..++.++...+ ..+|+|+|+|+.+++.+++|++++++.++++++.+|.. .||.+..||-+.
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCC
Confidence 36999999999999999998865 36899999999999999999999998656999999863 467777774332
Q ss_pred cccccccccccccccccccccchh--HHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397 185 PGSCNSVLQEKDDTFREWTSRIPW--KERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE 250 (313)
Q Consensus 185 ~~s~sg~l~~~p~~~~~w~~~~~~--~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs 250 (313)
.... +...++.. .|.+...- .........+++..+.+.+++ ||.+++.++.
T Consensus 194 ~~~~---~~~~~~~~-~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~-----------gG~l~~e~g~ 246 (284)
T TIGR00536 194 DEED---LADLPNVV-RFEPLLALVGGDDGLNILRQIIELAPDYLKP-----------NGFLVCEIGN 246 (284)
T ss_pred Ccch---hhcCCccc-ccCcHHHhcCCCcHHHHHHHHHHHHHHhccC-----------CCEEEEEECc
Confidence 2111 11112111 12211100 011123445555666666654 9999998886
No 61
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.03 E-value=1.2e-09 Score=102.29 Aligned_cols=86 Identities=13% Similarity=0.118 Sum_probs=68.6
Q ss_pred CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcc
Q 021397 107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPG 186 (313)
Q Consensus 107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~ 186 (313)
.+.+|.+|||+|||+|..+..+++. ...|+|+|+++++++.++++++..+...+++++++|+..++. .+..||.+
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~--~~~~FD~V 202 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD--EGRKFDAV 202 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh--ccCCCCEE
Confidence 3567889999999999999999863 368999999999999999887766554579999999877653 23456666
Q ss_pred ccccccccccc
Q 021397 187 SCNSVLQEKDD 197 (313)
Q Consensus 187 s~sg~l~~~p~ 197 (313)
.|..++.+-++
T Consensus 203 i~~~vLeHv~d 213 (322)
T PLN02396 203 LSLEVIEHVAN 213 (322)
T ss_pred EEhhHHHhcCC
Confidence 88888876665
No 62
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.01 E-value=5.7e-09 Score=98.70 Aligned_cols=86 Identities=20% Similarity=0.198 Sum_probs=68.7
Q ss_pred ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC--
Q 021397 95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT-- 172 (313)
Q Consensus 95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~-- 172 (313)
.|..+.++...+......+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.+++++++.++. .+++..|+.
T Consensus 181 lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p-~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~ 257 (342)
T PRK09489 181 LDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSP-KIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD 257 (342)
T ss_pred CCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc
Confidence 477888888877666667999999999999999998754 368999999999999999999999874 466777753
Q ss_pred ---CCCcccccccc
Q 021397 173 ---TFSLAPLRLLL 183 (313)
Q Consensus 173 ---~~d~v~~D~~l 183 (313)
.||.+..+|.|
T Consensus 258 ~~~~fDlIvsNPPF 271 (342)
T PRK09489 258 IKGRFDMIISNPPF 271 (342)
T ss_pred cCCCccEEEECCCc
Confidence 35555555543
No 63
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.01 E-value=4e-09 Score=99.04 Aligned_cols=92 Identities=18% Similarity=0.211 Sum_probs=68.3
Q ss_pred HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR 180 (313)
Q Consensus 101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D 180 (313)
.+...+.+.+|.+|||+|||+|..+..++.. + ...|+|+|+|+.++.+.+...+..+...++.++.+|+..++. +
T Consensus 113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~-g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~---~ 187 (322)
T PRK15068 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGA-G-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA---L 187 (322)
T ss_pred HHHHhhCCCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC---c
Confidence 3445666678899999999999999999886 3 247999999999987665543433333479999999887764 4
Q ss_pred cccCccccccccccccc
Q 021397 181 LLLDPGSCNSVLQEKDD 197 (313)
Q Consensus 181 ~~l~~~s~sg~l~~~p~ 197 (313)
..||.+.|.+++.+..+
T Consensus 188 ~~FD~V~s~~vl~H~~d 204 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRS 204 (322)
T ss_pred CCcCEEEECChhhccCC
Confidence 45666688888765443
No 64
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.00 E-value=2.6e-09 Score=93.22 Aligned_cols=85 Identities=19% Similarity=0.038 Sum_probs=64.7
Q ss_pred HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR 180 (313)
Q Consensus 101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D 180 (313)
.+...+.+.++.+|||+|||+|..+..+++. ...|+|+|+|+.+++.++++++..++ ++.+...|...++. +
T Consensus 21 ~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~---~ 92 (195)
T TIGR00477 21 AVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAAL---N 92 (195)
T ss_pred HHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccc---c
Confidence 4445666667789999999999999999974 36899999999999999999988887 37777778754432 3
Q ss_pred cccCccccccccc
Q 021397 181 LLLDPGSCNSVLQ 193 (313)
Q Consensus 181 ~~l~~~s~sg~l~ 193 (313)
..+|.+.++.+++
T Consensus 93 ~~fD~I~~~~~~~ 105 (195)
T TIGR00477 93 EDYDFIFSTVVFM 105 (195)
T ss_pred CCCCEEEEecccc
Confidence 3345445555553
No 65
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.00 E-value=2.5e-09 Score=97.04 Aligned_cols=86 Identities=16% Similarity=0.124 Sum_probs=66.0
Q ss_pred HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL 179 (313)
Q Consensus 100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~ 179 (313)
.-+...+.+.++.+|||+|||+|..+..+++..+ .++|+|+|+|+.|++.++++ +++++.+|+..+. .
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p-~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~---~ 86 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWP-GAVIEALDSSPEMVAAARER--------GVDARTGDVRDWK---P 86 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCC---C
Confidence 3345567778899999999999999999998864 47899999999999988752 4678889987653 2
Q ss_pred ccccCccccccccccccc
Q 021397 180 RLLLDPGSCNSVLQEKDD 197 (313)
Q Consensus 180 D~~l~~~s~sg~l~~~p~ 197 (313)
+..||.+.|..+++..++
T Consensus 87 ~~~fD~v~~~~~l~~~~d 104 (255)
T PRK14103 87 KPDTDVVVSNAALQWVPE 104 (255)
T ss_pred CCCceEEEEehhhhhCCC
Confidence 455666677777654443
No 66
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.00 E-value=9.5e-10 Score=95.87 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=56.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+.+|||+|||+|..+..+++..+ ...|+|+|+++.+++.+++++++.++. |++++++|+..+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p-~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~ 78 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNP-DKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANEL 78 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCC-CCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHH
Confidence 456999999999999999998865 478999999999999999999999986 799999999754
No 67
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.00 E-value=3.9e-09 Score=93.19 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=68.9
Q ss_pred cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe-cCC
Q 021397 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV-ADG 171 (313)
Q Consensus 96 d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~-~D~ 171 (313)
.+...++..++......+||++|.+.|..|++||..++..++++++|+++++.+.+++|+++.|+.++|+++. +|+
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gda 121 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDA 121 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcH
Confidence 5666777778888888999999999999999999999877899999999999999999999999998888888 476
No 68
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.99 E-value=4.3e-09 Score=95.47 Aligned_cols=91 Identities=22% Similarity=0.282 Sum_probs=67.5
Q ss_pred EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
.|...+..+...+.+.++.+|||+|||+|..+..+++..+ .+.|+|+|+|+.+++.+++++ . ++.++.+|+..
T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~~~v~gvD~s~~~i~~a~~~~-----~-~~~~~~~d~~~ 87 (258)
T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWP-AARITGIDSSPAMLAEARSRL-----P-DCQFVEADIAS 87 (258)
T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhC-----C-CCeEEECchhc
Confidence 3444455556667778899999999999999999998864 479999999999999998763 2 57888999875
Q ss_pred CCccccccccCcccccccccc
Q 021397 174 FSLAPLRLLLDPGSCNSVLQE 194 (313)
Q Consensus 174 ~d~v~~D~~l~~~s~sg~l~~ 194 (313)
+.. +..||.+.++.+++.
T Consensus 88 ~~~---~~~fD~v~~~~~l~~ 105 (258)
T PRK01683 88 WQP---PQALDLIFANASLQW 105 (258)
T ss_pred cCC---CCCccEEEEccChhh
Confidence 431 234454566655543
No 69
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.99 E-value=2.6e-09 Score=97.02 Aligned_cols=82 Identities=13% Similarity=0.138 Sum_probs=65.0
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccc
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSC 188 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~ 188 (313)
.++.+|||+|||+|..+..+++. ...|+++|+|+.+++.++++++..|+.++++++++|+..+.. ..+..||.+.|
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-~~~~~fD~V~~ 118 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-HLETPVDLILF 118 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-hcCCCCCEEEe
Confidence 45689999999999999999985 368999999999999999999999987689999999876532 12334555566
Q ss_pred cccccc
Q 021397 189 NSVLQE 194 (313)
Q Consensus 189 sg~l~~ 194 (313)
.+++..
T Consensus 119 ~~vl~~ 124 (255)
T PRK11036 119 HAVLEW 124 (255)
T ss_pred hhHHHh
Confidence 666543
No 70
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.99 E-value=7.5e-09 Score=92.11 Aligned_cols=93 Identities=23% Similarity=0.354 Sum_probs=71.0
Q ss_pred HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL 179 (313)
Q Consensus 100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~ 179 (313)
..+...+.+.++.+|||+|||+|..+..++...+...+++++|+++.+++.+++++...+...++.++.+|+..++. .
T Consensus 41 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--~ 118 (239)
T PRK00216 41 RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF--P 118 (239)
T ss_pred HHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--C
Confidence 34455666778899999999999999999998753579999999999999999998876665578999999876542 1
Q ss_pred ccccCcccccccccc
Q 021397 180 RLLLDPGSCNSVLQE 194 (313)
Q Consensus 180 D~~l~~~s~sg~l~~ 194 (313)
+..+|.+.++..+..
T Consensus 119 ~~~~D~I~~~~~l~~ 133 (239)
T PRK00216 119 DNSFDAVTIAFGLRN 133 (239)
T ss_pred CCCccEEEEeccccc
Confidence 234454455555443
No 71
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.97 E-value=3.1e-09 Score=96.12 Aligned_cols=89 Identities=20% Similarity=0.135 Sum_probs=67.0
Q ss_pred EEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 93 ~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
.+|...+..+...+...++.+|||+|||+|..+..+++. ...|+++|+|+.+++.++++.. .+.++++|+.
T Consensus 25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~ 95 (251)
T PRK10258 25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIE 95 (251)
T ss_pred HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcc
Confidence 368888888888887777889999999999999888763 3689999999999999887632 2457888987
Q ss_pred CCCccccccccCcccccccc
Q 021397 173 TFSLAPLRLLLDPGSCNSVL 192 (313)
Q Consensus 173 ~~d~v~~D~~l~~~s~sg~l 192 (313)
.+++ .+..||.+.++..+
T Consensus 96 ~~~~--~~~~fD~V~s~~~l 113 (251)
T PRK10258 96 SLPL--ATATFDLAWSNLAV 113 (251)
T ss_pred cCcC--CCCcEEEEEECchh
Confidence 7653 23445544554444
No 72
>PRK08317 hypothetical protein; Provisional
Probab=98.96 E-value=1.1e-08 Score=90.63 Aligned_cols=89 Identities=24% Similarity=0.362 Sum_probs=66.9
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccccc
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRL 181 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~ 181 (313)
+...+.+.++.+|||+|||+|..+..+++.++..++++++|+++.+++.++++.... ..++.+..+|+..++. .+.
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~--~~~ 86 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPF--PDG 86 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCC--CCC
Confidence 445677889999999999999999999998755579999999999999999873322 2378999999876553 123
Q ss_pred ccCcccccccccc
Q 021397 182 LLDPGSCNSVLQE 194 (313)
Q Consensus 182 ~l~~~s~sg~l~~ 194 (313)
.||.+.+..++..
T Consensus 87 ~~D~v~~~~~~~~ 99 (241)
T PRK08317 87 SFDAVRSDRVLQH 99 (241)
T ss_pred CceEEEEechhhc
Confidence 4444455554443
No 73
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.96 E-value=9.8e-09 Score=96.19 Aligned_cols=71 Identities=15% Similarity=0.332 Sum_probs=63.1
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
....++++++++|||+|||+|..+..+++..+..+.|+++|+++.+++.++++++++|+. ++.++.+|+..
T Consensus 72 ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~~~ 142 (322)
T PRK13943 72 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDGYY 142 (322)
T ss_pred HHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCChhh
Confidence 445667889999999999999999999998865678999999999999999999999985 79999999754
No 74
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.95 E-value=1.5e-08 Score=94.38 Aligned_cols=76 Identities=13% Similarity=0.071 Sum_probs=65.3
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 98 ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
....+...++..++.+|||+|||+|..+..+++..+ ..+++++|. +.+++.+++++++.|+.++++++.+|+...+
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFP-ELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES 212 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCC-CCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence 345566677788889999999999999999999875 478999997 7899999999999999888999999986543
No 75
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.95 E-value=1.3e-08 Score=89.88 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=66.5
Q ss_pred CeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 021397 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA 169 (313)
Q Consensus 90 G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~ 169 (313)
|....+-.....+...+.++++++|||+|||+|..+..+++.. ++|+++|+++.+++.++++++++++. +++++.+
T Consensus 58 ~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~ 133 (212)
T PRK00312 58 GQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHG 133 (212)
T ss_pred CCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEEC
Confidence 4444444444556677889999999999999999999888764 48999999999999999999999986 6999999
Q ss_pred CCCC
Q 021397 170 DGTT 173 (313)
Q Consensus 170 D~~~ 173 (313)
|+..
T Consensus 134 d~~~ 137 (212)
T PRK00312 134 DGWK 137 (212)
T ss_pred Cccc
Confidence 9743
No 76
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.95 E-value=7.8e-09 Score=94.48 Aligned_cols=74 Identities=27% Similarity=0.275 Sum_probs=60.6
Q ss_pred cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC------CCCcccc
Q 021397 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT------TFSLAPL 179 (313)
Q Consensus 106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~------~~d~v~~ 179 (313)
+...++.+|||+|||+|..+..++...+ ...|+++|+|+.+++.+++|++ .+...++.++.+|.. .||.+..
T Consensus 104 ~~~~~~~~vLDiG~GsG~~~~~la~~~~-~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~fD~Iv~ 181 (275)
T PRK09328 104 LLLKEPLRVLDLGTGSGAIALALAKERP-DAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGRFDLIVS 181 (275)
T ss_pred ccccCCCEEEEEcCcHHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCceeEEEE
Confidence 3456788999999999999999999875 4799999999999999999998 333347999999873 4666666
Q ss_pred cc
Q 021397 180 RL 181 (313)
Q Consensus 180 D~ 181 (313)
||
T Consensus 182 np 183 (275)
T PRK09328 182 NP 183 (275)
T ss_pred CC
Confidence 73
No 77
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.95 E-value=7.3e-09 Score=94.62 Aligned_cols=100 Identities=14% Similarity=0.155 Sum_probs=71.5
Q ss_pred cccCCeEEEecH-HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcE
Q 021397 86 AYKQGKIYGIDA-ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRC 164 (313)
Q Consensus 86 ~~~~G~~~~Qd~-ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v 164 (313)
.|..|++..... .+..++..+.+.++.+|||+|||+|+.+..+++.. .++|+++|+|+.+++.+++++.. .+++
T Consensus 27 ~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~---~~~i 101 (263)
T PTZ00098 27 IFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD---KNKI 101 (263)
T ss_pred HhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc---CCce
Confidence 345566666533 24445567788999999999999999999998764 36899999999999999987653 2479
Q ss_pred EEEecCCCCCCccccccccCcccccccc
Q 021397 165 RLFVADGTTFSLAPLRLLLDPGSCNSVL 192 (313)
Q Consensus 165 ~~~~~D~~~~d~v~~D~~l~~~s~sg~l 192 (313)
.+..+|+...++. +..||.+.+..++
T Consensus 102 ~~~~~D~~~~~~~--~~~FD~V~s~~~l 127 (263)
T PTZ00098 102 EFEANDILKKDFP--ENTFDMIYSRDAI 127 (263)
T ss_pred EEEECCcccCCCC--CCCeEEEEEhhhH
Confidence 9999998754431 2334444444433
No 78
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.94 E-value=1.8e-09 Score=94.93 Aligned_cols=74 Identities=16% Similarity=0.287 Sum_probs=63.1
Q ss_pred HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
.+++..++......+||++|++.|.-|+++|+.+++.++|+++|+++.+.+.+++++++.|+.++|+++.+|+.
T Consensus 34 g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~ 107 (205)
T PF01596_consen 34 GQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDAL 107 (205)
T ss_dssp HHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HH
T ss_pred HHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccH
Confidence 34444444444567999999999999999999998889999999999999999999999999889999999984
No 79
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.93 E-value=1.1e-08 Score=95.45 Aligned_cols=90 Identities=18% Similarity=0.176 Sum_probs=64.5
Q ss_pred HHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccc
Q 021397 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLL 182 (313)
Q Consensus 103 ~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~ 182 (313)
...+++.+|.+|||+|||+|..+..++.. + ...|+|+|+|+.++.+++..-+..+...++.+...|+..++. +..
T Consensus 114 l~~l~~~~g~~VLDvGCG~G~~~~~~~~~-g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~---~~~ 188 (314)
T TIGR00452 114 LPHLSPLKGRTILDVGCGSGYHMWRMLGH-G-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE---LYA 188 (314)
T ss_pred HHhcCCCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC---CCC
Confidence 33456788999999999999999888865 2 257999999999998765433333333467788888766553 235
Q ss_pred cCccccccccccccc
Q 021397 183 LDPGSCNSVLQEKDD 197 (313)
Q Consensus 183 l~~~s~sg~l~~~p~ 197 (313)
||.+.|.|++.+.++
T Consensus 189 FD~V~s~gvL~H~~d 203 (314)
T TIGR00452 189 FDTVFSMGVLYHRKS 203 (314)
T ss_pred cCEEEEcchhhccCC
Confidence 666688888866554
No 80
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.93 E-value=3e-09 Score=82.59 Aligned_cols=74 Identities=22% Similarity=0.321 Sum_probs=56.5
Q ss_pred EEEECCCcChHHHHHHHHh--CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccccc
Q 021397 114 VLDLCAAPGAKLCMILDII--GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSV 191 (313)
Q Consensus 114 VLDlcagpG~kt~~la~~~--~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg~ 191 (313)
|||+|||+|..+..+++.. +....++++|+|+.+++.++++.+..+. +++++++|+..++. .+..++.+.|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~--~~~~~D~v~~~~~ 76 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPF--SDGKFDLVVCSGL 76 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHH--HSSSEEEEEE-TT
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcc--cCCCeeEEEEcCC
Confidence 7999999999999999986 2236899999999999999999988777 68999999988653 3455555566553
No 81
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.92 E-value=1.1e-08 Score=101.11 Aligned_cols=92 Identities=17% Similarity=0.140 Sum_probs=70.6
Q ss_pred HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL 179 (313)
Q Consensus 100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~ 179 (313)
..++..+.+.++.+|||+|||+|..+..+++.. ...|+|+|+|+.+++.++++.... ..++++..+|+...++ .
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~--~~~v~~~~~d~~~~~~--~ 329 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGR--KCSVEFEVADCTKKTY--P 329 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcC--CCceEEEEcCcccCCC--C
Confidence 345566677889999999999999999999875 368999999999999999887533 3479999999876543 2
Q ss_pred ccccCccccccccccccc
Q 021397 180 RLLLDPGSCNSVLQEKDD 197 (313)
Q Consensus 180 D~~l~~~s~sg~l~~~p~ 197 (313)
+..||.+.|.+++.+.++
T Consensus 330 ~~~fD~I~s~~~l~h~~d 347 (475)
T PLN02336 330 DNSFDVIYSRDTILHIQD 347 (475)
T ss_pred CCCEEEEEECCcccccCC
Confidence 345666677777765544
No 82
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.92 E-value=1.7e-08 Score=96.45 Aligned_cols=88 Identities=18% Similarity=0.203 Sum_probs=72.3
Q ss_pred cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CcEEEEecCCC-
Q 021397 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG--DRCRLFVADGT- 172 (313)
Q Consensus 96 d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~--~~v~~~~~D~~- 172 (313)
|..+.+....+....+.+|||+|||+|..+..+++..+ ..+|+++|+|+.+++.+++|++.++.. .+++++..|+.
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P-~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNP-QAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 88898888888766677999999999999999998864 479999999999999999999888753 26888888863
Q ss_pred -----CCCccccccccC
Q 021397 173 -----TFSLAPLRLLLD 184 (313)
Q Consensus 173 -----~~d~v~~D~~l~ 184 (313)
.||.|+.+|.|.
T Consensus 293 ~~~~~~fDlIlsNPPfh 309 (378)
T PRK15001 293 GVEPFRFNAVLCNPPFH 309 (378)
T ss_pred cCCCCCEEEEEECcCcc
Confidence 466666666543
No 83
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.92 E-value=1.9e-09 Score=95.38 Aligned_cols=106 Identities=21% Similarity=0.216 Sum_probs=79.9
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccc
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSC 188 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~ 188 (313)
-+|.+|||+|||-|..+..||+. +..|+|+|++++.++.++..+.+.|+ ++......+..+... --.||.+.|
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~--~~~FDvV~c 130 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASA--GGQFDVVTC 130 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhc--CCCccEEEE
Confidence 47999999999999999999985 37899999999999999999988887 355554444322110 024455588
Q ss_pred cccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397 189 NSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE 250 (313)
Q Consensus 189 sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs 250 (313)
--++.|-|+. ...++.+.+++|| ||.++.||=-
T Consensus 131 mEVlEHv~dp------------------~~~~~~c~~lvkP-----------~G~lf~STin 163 (243)
T COG2227 131 MEVLEHVPDP------------------ESFLRACAKLVKP-----------GGILFLSTIN 163 (243)
T ss_pred hhHHHccCCH------------------HHHHHHHHHHcCC-----------CcEEEEeccc
Confidence 8889888875 1234567777755 9999999975
No 84
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.91 E-value=1.5e-08 Score=97.31 Aligned_cols=83 Identities=13% Similarity=0.088 Sum_probs=64.1
Q ss_pred HHHHHHHHhcC-CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC---
Q 021397 97 AASGAAVSALN-ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT--- 172 (313)
Q Consensus 97 ~ss~~~~~~l~-~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~--- 172 (313)
....++-.++. +.++.+|||+|||+|..+..++...+ ..+|+|+|+|+.+++.+++|+++++. +++++++|..
T Consensus 237 eTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p-~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~ 313 (423)
T PRK14966 237 ETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERP-DAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTD 313 (423)
T ss_pred cHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccc
Confidence 33344433332 45677999999999999999987654 47899999999999999999999886 6999999873
Q ss_pred -----CCCccccccc
Q 021397 173 -----TFSLAPLRLL 182 (313)
Q Consensus 173 -----~~d~v~~D~~ 182 (313)
.||.+..||.
T Consensus 314 l~~~~~FDLIVSNPP 328 (423)
T PRK14966 314 MPSEGKWDIIVSNPP 328 (423)
T ss_pred cccCCCccEEEECCC
Confidence 2566666643
No 85
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.90 E-value=1.3e-08 Score=96.98 Aligned_cols=130 Identities=8% Similarity=0.105 Sum_probs=87.8
Q ss_pred EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
++|..- ....+....+..+||+|||+|..+.++|...+ ...++|+|+++.+++.+.+++.+.|+. |+.++++|+..
T Consensus 108 ~~d~~~--~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P-~~~~iGIEI~~~~i~~a~~ka~~~gL~-NV~~i~~DA~~ 183 (390)
T PRK14121 108 ILDIDN--FLDFISKNQEKILIEIGFGSGRHLLYQAKNNP-NKLFIGIEIHTPSIEQVLKQIELLNLK-NLLIINYDARL 183 (390)
T ss_pred cCCHHH--HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCC-CCCEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHH
Confidence 555442 23344556678999999999999999999875 478999999999999999999999996 79999999975
Q ss_pred CCccccccccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397 174 FSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE 250 (313)
Q Consensus 174 ~d~v~~D~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs 250 (313)
+...+.+.+ .+.++-+.|+. |....- ..-.+...+..+.+.+ ++||.+...|.+
T Consensus 184 ll~~~~~~s-----~D~I~lnFPdP---W~KkrH----RRlv~~~fL~e~~RvL-----------kpGG~l~l~TD~ 237 (390)
T PRK14121 184 LLELLPSNS-----VEKIFVHFPVP---WDKKPH----RRVISEDFLNEALRVL-----------KPGGTLELRTDS 237 (390)
T ss_pred hhhhCCCCc-----eeEEEEeCCCC---ccccch----hhccHHHHHHHHHHHc-----------CCCcEEEEEEEC
Confidence 432112222 22333334553 522211 1112233344444444 569999999997
No 86
>PRK14968 putative methyltransferase; Provisional
Probab=98.90 E-value=2.1e-08 Score=86.01 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=63.1
Q ss_pred CeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCc-EEEEe
Q 021397 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR-CRLFV 168 (313)
Q Consensus 90 G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~-v~~~~ 168 (313)
|.|..... +.++...+...++.+|||+|||+|..+..++.. ...|+++|+|+.+++.++++++..++.++ +.++.
T Consensus 4 ~~~~p~~~-~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~ 79 (188)
T PRK14968 4 EVYEPAED-SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIR 79 (188)
T ss_pred cccCcchh-HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEe
Confidence 44444333 455556666688999999999999999999987 36899999999999999999998887533 88888
Q ss_pred cCCC
Q 021397 169 ADGT 172 (313)
Q Consensus 169 ~D~~ 172 (313)
+|..
T Consensus 80 ~d~~ 83 (188)
T PRK14968 80 SDLF 83 (188)
T ss_pred cccc
Confidence 8864
No 87
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.90 E-value=1.1e-08 Score=91.97 Aligned_cols=70 Identities=26% Similarity=0.261 Sum_probs=59.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC------CCCcccccc
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT------TFSLAPLRL 181 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~------~~d~v~~D~ 181 (313)
.+.+|||+|||+|..+..+++..++ ..|+++|+++.+++.++++++..++. ++.++++|+. .||.+..||
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~np 162 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPGGKFDLIVSNP 162 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcCCceeEEEECC
Confidence 3569999999999999999987653 68999999999999999999999985 7999999974 355555663
No 88
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.89 E-value=1.6e-08 Score=97.11 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=64.3
Q ss_pred HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL 179 (313)
Q Consensus 100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~ 179 (313)
..++..+++++|++|||+|||+|+.+..+++..+ .+|+|+|+|+.+++.++++++ ++ ++++...|...++
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l~---- 226 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDLN---- 226 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhcC----
Confidence 4466677889999999999999999999998753 689999999999999998874 33 4778888876542
Q ss_pred ccccCcccccccccc
Q 021397 180 RLLLDPGSCNSVLQE 194 (313)
Q Consensus 180 D~~l~~~s~sg~l~~ 194 (313)
..||.+.+.+++.+
T Consensus 227 -~~fD~Ivs~~~~eh 240 (383)
T PRK11705 227 -GQFDRIVSVGMFEH 240 (383)
T ss_pred -CCCCEEEEeCchhh
Confidence 23443455555543
No 89
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=3.5e-09 Score=92.13 Aligned_cols=121 Identities=16% Similarity=0.100 Sum_probs=82.9
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC--------------
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT-------------- 173 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~-------------- 173 (313)
+++|+.|+|+||+||||+..+++.++.++.|+|+|+.+-.. +. +|.++++|++.
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~-~V~~iq~d~~~~~~~~~l~~~l~~~ 110 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IP-GVIFLQGDITDEDTLEKLLEALGGA 110 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CC-CceEEeeeccCccHHHHHHHHcCCC
Confidence 46799999999999999999999999888899999977542 11 35666666532
Q ss_pred -CCccccc--cc----------------cCcc-ccccccccccc-ccccccccchhHHH--HHHHHHHHHHhhhhhcccc
Q 021397 174 -FSLAPLR--LL----------------LDPG-SCNSVLQEKDD-TFREWTSRIPWKER--KRAVKARENAASKAIVRSE 230 (313)
Q Consensus 174 -~d~v~~D--~~----------------l~~~-s~sg~l~~~p~-~~~~w~~~~~~~~~--~~~~q~~~l~~~~~~~r~~ 230 (313)
.|.|..| |. +... .+..++.+... +.+.++++...... .++.+..+...++..+|+.
T Consensus 111 ~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~F~~v~~~KP~aSR~~ 190 (205)
T COG0293 111 PVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRLFRKVKIFKPKASRKR 190 (205)
T ss_pred CcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHhhceeEEecCccccCC
Confidence 2333333 10 0000 01112222222 56778777776543 3778888888999999999
Q ss_pred CcceeEeecC
Q 021397 231 HPELIFYGRR 240 (313)
Q Consensus 231 ~~El~~~~k~ 240 (313)
|+|+|++++.
T Consensus 191 S~E~y~v~~~ 200 (205)
T COG0293 191 SREIYLVAKG 200 (205)
T ss_pred CceEEEEEec
Confidence 9999999875
No 90
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=1.8e-08 Score=92.80 Aligned_cols=95 Identities=22% Similarity=0.169 Sum_probs=71.1
Q ss_pred cCCeEEEecHHHHHHHHhc-CCCCCC-EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEE
Q 021397 88 KQGKIYGIDAASGAAVSAL-NISAGD-HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR 165 (313)
Q Consensus 88 ~~G~~~~Qd~ss~~~~~~l-~~~~g~-~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~ 165 (313)
.++.+.+....-.++-.++ ...... +|||+|||+|..++.++...++ ..|+|+|+|+.+++.+++|++++|+ .++.
T Consensus 86 ~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~ 163 (280)
T COG2890 86 DEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGL-VRVL 163 (280)
T ss_pred CCCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCC-ccEE
Confidence 3455555555554444432 222223 7999999999999999998654 6999999999999999999999998 4677
Q ss_pred EEecCCC-----CCCccccccccC
Q 021397 166 LFVADGT-----TFSLAPLRLLLD 184 (313)
Q Consensus 166 ~~~~D~~-----~~d~v~~D~~l~ 184 (313)
++.+|.. .||.+.++|-+.
T Consensus 164 ~~~~dlf~~~~~~fDlIVsNPPYi 187 (280)
T COG2890 164 VVQSDLFEPLRGKFDLIVSNPPYI 187 (280)
T ss_pred EEeeecccccCCceeEEEeCCCCC
Confidence 7777752 588888885544
No 91
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.86 E-value=2.7e-08 Score=90.15 Aligned_cols=85 Identities=20% Similarity=0.251 Sum_probs=60.8
Q ss_pred cccCCeEEEecHHHHHHHHhcC--CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCc
Q 021397 86 AYKQGKIYGIDAASGAAVSALN--ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR 163 (313)
Q Consensus 86 ~~~~G~~~~Qd~ss~~~~~~l~--~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~ 163 (313)
.|..|. -+.+......+. +.++.+|||+|||+|..+..++.. +. ..|+|+|+|+.+++.+++|++.+++.++
T Consensus 97 afgtg~----h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~~~~~~~ 170 (250)
T PRK00517 97 AFGTGT----HPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAELNGVELN 170 (250)
T ss_pred ccCCCC----CHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHcCCCce
Confidence 455555 233444444433 568999999999999988876653 43 4799999999999999999999988545
Q ss_pred EEEEecCCCCCCcc
Q 021397 164 CRLFVADGTTFSLA 177 (313)
Q Consensus 164 v~~~~~D~~~~d~v 177 (313)
+.+..+|. .||.+
T Consensus 171 ~~~~~~~~-~fD~V 183 (250)
T PRK00517 171 VYLPQGDL-KADVI 183 (250)
T ss_pred EEEccCCC-CcCEE
Confidence 66655554 44544
No 92
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.85 E-value=7.7e-09 Score=78.17 Aligned_cols=73 Identities=23% Similarity=0.271 Sum_probs=55.6
Q ss_pred EEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccccccccc
Q 021397 115 LDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQE 194 (313)
Q Consensus 115 LDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg~l~~ 194 (313)
||+|||+|..+..+++. +...|+++|+++.+++.++++.... ++.+..+|++.+++ .|..||.+.+.+++.+
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~--~~~sfD~v~~~~~~~~ 72 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPF--PDNSFDVVFSNSVLHH 72 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS---TT-EEEEEEESHGGG
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCcc--ccccccccccccceee
Confidence 89999999999999997 3479999999999999999876543 45699999988864 3566666677776654
Q ss_pred c
Q 021397 195 K 195 (313)
Q Consensus 195 ~ 195 (313)
-
T Consensus 73 ~ 73 (95)
T PF08241_consen 73 L 73 (95)
T ss_dssp S
T ss_pred c
Confidence 3
No 93
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.84 E-value=7.8e-09 Score=96.86 Aligned_cols=66 Identities=14% Similarity=0.138 Sum_probs=57.3
Q ss_pred HhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 104 ~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
..+...++.+|||+|||+|..++.+++. ...|+|+|+++.+++.+++|++.+++. +++++++|+..
T Consensus 167 ~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~-~v~~~~~D~~~ 232 (315)
T PRK03522 167 DWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLT-NVQFQALDSTQ 232 (315)
T ss_pred HHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEcCHHH
Confidence 3444446789999999999999999984 368999999999999999999999984 79999999854
No 94
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.84 E-value=3.1e-08 Score=87.87 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=64.0
Q ss_pred CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccccc
Q 021397 112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSV 191 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg~ 191 (313)
++|||+|||+|+.+..+++..+ ...|+++|+|+.+++.++++++..|+.++++++..|....+. ...||.+.+..+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~---~~~fD~I~~~~~ 76 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF---PDTYDLVFGFEV 76 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC---CCCCCEeehHHH
Confidence 3799999999999999998864 368999999999999999999999988789999999854332 223555566666
Q ss_pred ccccc
Q 021397 192 LQEKD 196 (313)
Q Consensus 192 l~~~p 196 (313)
+.+.+
T Consensus 77 l~~~~ 81 (224)
T smart00828 77 IHHIK 81 (224)
T ss_pred HHhCC
Confidence 55443
No 95
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.84 E-value=1.7e-08 Score=100.28 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=62.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC------CCCcccccccc
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT------TFSLAPLRLLL 183 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~------~~d~v~~D~~l 183 (313)
++.+|||+|||+|..++.++...++ .+|+|+|+|+.+++.+++|++++++.+++.++.+|+. .||.+.+||-+
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCC
Confidence 4568999999999999999987653 7999999999999999999999998768999999863 47777777443
No 96
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.9e-08 Score=85.87 Aligned_cols=91 Identities=20% Similarity=0.115 Sum_probs=68.3
Q ss_pred cCCeEEEecHHHHHHHH--hcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEE
Q 021397 88 KQGKIYGIDAASGAAVS--ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR 165 (313)
Q Consensus 88 ~~G~~~~Qd~ss~~~~~--~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~ 165 (313)
.+-|-.+-+.++.++.. ..+.-.|..|+|+|||+|..++..+-+ + ..+|+|+|+++++++.+++|+.+++ +++.
T Consensus 21 LEQY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l-G-a~~V~~vdiD~~a~ei~r~N~~~l~--g~v~ 96 (198)
T COG2263 21 LEQYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL-G-ASRVLAVDIDPEALEIARANAEELL--GDVE 96 (198)
T ss_pred ceecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc-C-CcEEEEEecCHHHHHHHHHHHHhhC--CceE
Confidence 33344444556655433 345667889999999999999877654 4 3699999999999999999999944 3799
Q ss_pred EEecCCCCCC----ccccccc
Q 021397 166 LFVADGTTFS----LAPLRLL 182 (313)
Q Consensus 166 ~~~~D~~~~d----~v~~D~~ 182 (313)
++.+|++.|+ .+..||-
T Consensus 97 f~~~dv~~~~~~~dtvimNPP 117 (198)
T COG2263 97 FVVADVSDFRGKFDTVIMNPP 117 (198)
T ss_pred EEEcchhhcCCccceEEECCC
Confidence 9999998764 3455655
No 97
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.83 E-value=3.3e-08 Score=91.39 Aligned_cols=81 Identities=22% Similarity=0.174 Sum_probs=62.5
Q ss_pred hcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccC
Q 021397 105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLD 184 (313)
Q Consensus 105 ~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~ 184 (313)
.+...++.+|||+|||+|..+..+++. ...|+|+|+|+.+++.++++++..++ ++++...|+...+. +..||
T Consensus 115 ~~~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~---~~~fD 186 (287)
T PRK12335 115 AVQTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI---QEEYD 186 (287)
T ss_pred HhhccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc---cCCcc
Confidence 333334569999999999999999884 36899999999999999999999888 58888888765432 44455
Q ss_pred ccccccccc
Q 021397 185 PGSCNSVLQ 193 (313)
Q Consensus 185 ~~s~sg~l~ 193 (313)
.+.+..++.
T Consensus 187 ~I~~~~vl~ 195 (287)
T PRK12335 187 FILSTVVLM 195 (287)
T ss_pred EEEEcchhh
Confidence 556665553
No 98
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.82 E-value=3.4e-08 Score=89.14 Aligned_cols=78 Identities=10% Similarity=0.138 Sum_probs=68.9
Q ss_pred ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
.....+++..++......+||++|++.|.-|+++|..++..|+|+++|+++.+.+.+++++++.|+.++|+++.+|+.
T Consensus 64 ~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~ 141 (247)
T PLN02589 64 SADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL 141 (247)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH
Confidence 345667776666666677999999999999999999988789999999999999999999999999889999999873
No 99
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.82 E-value=3.4e-08 Score=87.17 Aligned_cols=55 Identities=27% Similarity=0.306 Sum_probs=46.1
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+++|.+|||+|||||.++..+++..+..+.|+|+|+++ + .... +++++++|+...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~-~v~~i~~D~~~~ 103 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIV-GVDFLQGDFRDE 103 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCC-CcEEEecCCCCh
Confidence 46789999999999999999999987778999999998 1 1233 588999998764
No 100
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.81 E-value=4.7e-08 Score=84.82 Aligned_cols=75 Identities=24% Similarity=0.257 Sum_probs=56.7
Q ss_pred cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 96 d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
..-|. +..++..-++.++||+|||.|..+..+|++ +-.|+|+|+|+..++.+++.+++.++ .|+....|...++
T Consensus 17 ~~hs~-v~~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l--~i~~~~~Dl~~~~ 90 (192)
T PF03848_consen 17 PTHSE-VLEAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGL--DIRTRVADLNDFD 90 (192)
T ss_dssp ---HH-HHHHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT---TEEEEE-BGCCBS
T ss_pred CCcHH-HHHHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCc--eeEEEEecchhcc
Confidence 33444 445566667789999999999999999985 36899999999999999999999998 4999999987765
Q ss_pred c
Q 021397 176 L 176 (313)
Q Consensus 176 ~ 176 (313)
.
T Consensus 91 ~ 91 (192)
T PF03848_consen 91 F 91 (192)
T ss_dssp -
T ss_pred c
Confidence 4
No 101
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.80 E-value=2.8e-08 Score=86.88 Aligned_cols=67 Identities=19% Similarity=0.233 Sum_probs=53.3
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
+++|+.|+|++||-|.+++.+|+.. +...|+|+|+++..++.+++|++.+++.+++.++++|+..+.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~ 165 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL 165 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--
T ss_pred CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc
Confidence 6789999999999999999999853 346899999999999999999999999988999999998764
No 102
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=5.6e-08 Score=89.05 Aligned_cols=88 Identities=19% Similarity=0.198 Sum_probs=75.1
Q ss_pred ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC--
Q 021397 95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT-- 172 (313)
Q Consensus 95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~-- 172 (313)
-|..|.++..-+....+.+|||+|||.|..++.+++..+ ..+|+-+|+|...++.+++|++.+++. +..+...|..
T Consensus 143 lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p-~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~ 220 (300)
T COG2813 143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSP-QAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEP 220 (300)
T ss_pred cChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCC-CCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEeccccc
Confidence 388999999999888888999999999999999999876 589999999999999999999999986 4466666652
Q ss_pred ---CCCccccccccC
Q 021397 173 ---TFSLAPLRLLLD 184 (313)
Q Consensus 173 ---~~d~v~~D~~l~ 184 (313)
.||.|..+|-|.
T Consensus 221 v~~kfd~IisNPPfh 235 (300)
T COG2813 221 VEGKFDLIISNPPFH 235 (300)
T ss_pred ccccccEEEeCCCcc
Confidence 477777776643
No 103
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.78 E-value=8.1e-08 Score=84.53 Aligned_cols=89 Identities=22% Similarity=0.275 Sum_probs=66.2
Q ss_pred HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR 180 (313)
Q Consensus 101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D 180 (313)
.+...+...++.+|||+|||+|..+..+++..+..++++++|+++.+++.++++.. ...++.++.+|+...+. .+
T Consensus 30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~--~~ 104 (223)
T TIGR01934 30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPF--ED 104 (223)
T ss_pred HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCC--CC
Confidence 34455556688999999999999999999887544689999999999999998875 22368899999876552 12
Q ss_pred cccCcccccccccc
Q 021397 181 LLLDPGSCNSVLQE 194 (313)
Q Consensus 181 ~~l~~~s~sg~l~~ 194 (313)
..+|.+.++..++.
T Consensus 105 ~~~D~i~~~~~~~~ 118 (223)
T TIGR01934 105 NSFDAVTIAFGLRN 118 (223)
T ss_pred CcEEEEEEeeeeCC
Confidence 33444455555543
No 104
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.78 E-value=9.4e-08 Score=84.66 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=56.5
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
+.++.+|||+|||+|..+..++.. ...|+|+|+|+.+++.+++++...+..+++.+.++|+...+
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~ 117 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC 117 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC
Confidence 567899999999999999999874 35899999999999999999988776557999999987654
No 105
>PRK06922 hypothetical protein; Provisional
Probab=98.77 E-value=7.7e-08 Score=96.63 Aligned_cols=88 Identities=19% Similarity=0.232 Sum_probs=65.6
Q ss_pred HHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccc
Q 021397 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLL 182 (313)
Q Consensus 103 ~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~ 182 (313)
...++..++.+|||+|||+|..+..+++..+ .+.|+|+|+|+.|++.+++++...+. ++.++++|+..++..+-+..
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~P-~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dLp~~fedeS 487 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEETE-DKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINLSSSFEKES 487 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhCccccCCCC
Confidence 3455666789999999999999999998765 47999999999999999998776664 68889999876542222333
Q ss_pred cCccccccccc
Q 021397 183 LDPGSCNSVLQ 193 (313)
Q Consensus 183 l~~~s~sg~l~ 193 (313)
||.+.++.+++
T Consensus 488 FDvVVsn~vLH 498 (677)
T PRK06922 488 VDTIVYSSILH 498 (677)
T ss_pred EEEEEEchHHH
Confidence 44444444443
No 106
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.75 E-value=1.2e-07 Score=87.64 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=60.8
Q ss_pred cccCCeEEEecHHHHHHHHhcC--CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCc
Q 021397 86 AYKQGKIYGIDAASGAAVSALN--ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR 163 (313)
Q Consensus 86 ~~~~G~~~~Qd~ss~~~~~~l~--~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~ 163 (313)
.|-+|. .+...+...++. ..+|++|||+|||+|..+..+++. + ..+|+|+|+++.+++.+++|++.+++.++
T Consensus 137 aFgtG~----h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~ 210 (288)
T TIGR00406 137 AFGTGT----HPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDR 210 (288)
T ss_pred cccCCC----CHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcc
Confidence 355554 345555544443 567899999999999999887764 3 36899999999999999999999998766
Q ss_pred EEEEecC
Q 021397 164 CRLFVAD 170 (313)
Q Consensus 164 v~~~~~D 170 (313)
+.+...|
T Consensus 211 ~~~~~~~ 217 (288)
T TIGR00406 211 LQVKLIY 217 (288)
T ss_pred eEEEecc
Confidence 7776665
No 107
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.75 E-value=3.7e-08 Score=96.48 Aligned_cols=67 Identities=22% Similarity=0.268 Sum_probs=59.2
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
+...+.+.+|++|||+|||+|..++.+++.. ..|+|+|+|+.+++.+++|++.+++. +++++++|+.
T Consensus 289 vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~~ 355 (443)
T PRK13168 289 ALEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLD-NVTFYHANLE 355 (443)
T ss_pred HHHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeChH
Confidence 3445667889999999999999999999863 58999999999999999999999986 6999999974
No 108
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.74 E-value=1.7e-08 Score=85.25 Aligned_cols=58 Identities=19% Similarity=0.287 Sum_probs=49.3
Q ss_pred CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
..|+|+|||-||-|+++|+.. .+|+|+|+++.+++.+++|++-+|+.++|+++++|..
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~ 58 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFF 58 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HH
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHH
Confidence 369999999999999999863 4799999999999999999999999889999999974
No 109
>PLN03075 nicotianamine synthase; Provisional
Probab=98.73 E-value=1.4e-07 Score=87.00 Aligned_cols=65 Identities=15% Similarity=0.093 Sum_probs=54.2
Q ss_pred CCCEEEEECCCcChHHHHH-HHHhCCCcEEEEEcCCHHHHHHHHHHHHH-cCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMI-LDIIGDSGSVTGVDVARHRLAACRTLLQK-YALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~l-a~~~~~~~~V~avD~s~~~l~~~~~~~~~-~g~~~~v~~~~~D~~~~ 174 (313)
++++|+|+|||||+.|..+ +....++++++++|+++.+++.+++++++ .|+.+++++..+|+...
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~ 189 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV 189 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc
Confidence 6789999999999875544 43444568999999999999999999965 88887899999998654
No 110
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.72 E-value=6.1e-08 Score=86.09 Aligned_cols=94 Identities=18% Similarity=0.146 Sum_probs=67.7
Q ss_pred EEecHHHHHHHHhcCC---CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 021397 93 YGIDAASGAAVSALNI---SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA 169 (313)
Q Consensus 93 ~~Qd~ss~~~~~~l~~---~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~ 169 (313)
.+|...+..+...+.. ..+.+|||+|||+|..+..+++..+ ...++++|+++.+++.+++++. .++.++.+
T Consensus 14 ~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~ 87 (240)
T TIGR02072 14 KIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFP-QAEFIALDISAGMLAQAKTKLS-----ENVQFICG 87 (240)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCC-CCcEEEEeChHHHHHHHHHhcC-----CCCeEEec
Confidence 3566555555554442 3457999999999999999999864 4679999999999998886643 26888999
Q ss_pred CCCCCCccccccccCcccccccccc
Q 021397 170 DGTTFSLAPLRLLLDPGSCNSVLQE 194 (313)
Q Consensus 170 D~~~~d~v~~D~~l~~~s~sg~l~~ 194 (313)
|+...+. .+..||.+.+..++..
T Consensus 88 d~~~~~~--~~~~fD~vi~~~~l~~ 110 (240)
T TIGR02072 88 DAEKLPL--EDSSFDLIVSNLALQW 110 (240)
T ss_pred chhhCCC--CCCceeEEEEhhhhhh
Confidence 9876653 2345665566666543
No 111
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.71 E-value=1e-07 Score=82.50 Aligned_cols=57 Identities=32% Similarity=0.426 Sum_probs=46.3
Q ss_pred hcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 105 ~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
...+++|++|||+|||||+.+..+++.....++|+++|+|+.+ ... +++++++|+..
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~-~i~~~~~d~~~ 83 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIE-NVDFIRGDFTD 83 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCC-CceEEEeeCCC
Confidence 3456789999999999999999999987656789999999865 122 57788888754
No 112
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.69 E-value=2.3e-07 Score=86.45 Aligned_cols=65 Identities=18% Similarity=0.194 Sum_probs=53.7
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
.++.+|||+|||+|.+|..+++.+.....++++|+|+.||+.+++++......-++..+++|+..
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~ 126 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ 126 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence 46789999999999999999998753468999999999999999988764322257788999865
No 113
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.66 E-value=6.5e-08 Score=92.00 Aligned_cols=68 Identities=22% Similarity=0.327 Sum_probs=52.9
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+..++++.++ .|||++||.|.+|+.+|+.. .+|+|+|+++.+++.|++|++.+++. |++++.+++..+
T Consensus 189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~-n~~f~~~~~~~~ 256 (352)
T PF05958_consen 189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGID-NVEFIRGDAEDF 256 (352)
T ss_dssp HHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHC
T ss_pred HHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCC-cceEEEeeccch
Confidence 4556777766 89999999999999999753 68999999999999999999999996 799998887543
No 114
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.66 E-value=1.1e-07 Score=88.00 Aligned_cols=75 Identities=20% Similarity=0.357 Sum_probs=58.3
Q ss_pred cccCCeEEEecHHHHHHHHhcC--CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCc
Q 021397 86 AYKQGKIYGIDAASGAAVSALN--ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR 163 (313)
Q Consensus 86 ~~~~G~~~~Qd~ss~~~~~~l~--~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~ 163 (313)
+|-+|. -+..+++..++. ..+|++|||+|||+|-.++..+.+ + ..+|+|+|+++..++.+++|++.+|+.++
T Consensus 139 AFGTG~----H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-G-A~~v~a~DiDp~Av~~a~~N~~~N~~~~~ 212 (295)
T PF06325_consen 139 AFGTGH----HPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-G-AKKVVAIDIDPLAVEAARENAELNGVEDR 212 (295)
T ss_dssp SS-SSH----CHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-T-BSEEEEEESSCHHHHHHHHHHHHTT-TTC
T ss_pred cccCCC----CHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEecCCHHHHHHHHHHHHHcCCCee
Confidence 456664 455666666654 578999999999999999887765 4 36899999999999999999999999876
Q ss_pred EEE
Q 021397 164 CRL 166 (313)
Q Consensus 164 v~~ 166 (313)
+.+
T Consensus 213 ~~v 215 (295)
T PF06325_consen 213 IEV 215 (295)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 115
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.64 E-value=2.2e-07 Score=83.52 Aligned_cols=62 Identities=23% Similarity=0.280 Sum_probs=56.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
.+..+||+|||+|..++.++..++ ++.|+|+|.|+.++..+.+|++++++.+++.+++.+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me 209 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIME 209 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccc
Confidence 456899999999999999999888 68999999999999999999999999999999877653
No 116
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.64 E-value=3.4e-07 Score=90.41 Aligned_cols=94 Identities=19% Similarity=0.098 Sum_probs=66.2
Q ss_pred ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
|......+...+.+.++.+|||+|||+|..+..+++.. .+|+|+|+++.+++.+++. .+...++.++++|+...
T Consensus 22 ~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~~~~ 95 (475)
T PLN02336 22 DKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESI---NGHYKNVKFMCADVTSP 95 (475)
T ss_pred CchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHH---hccCCceEEEEeccccc
Confidence 33444555667777788899999999999999999863 5899999999999876542 22224789999998643
Q ss_pred CccccccccCcccccccccc
Q 021397 175 SLAPLRLLLDPGSCNSVLQE 194 (313)
Q Consensus 175 d~v~~D~~l~~~s~sg~l~~ 194 (313)
+....+..||.+.|..++.+
T Consensus 96 ~~~~~~~~fD~I~~~~~l~~ 115 (475)
T PLN02336 96 DLNISDGSVDLIFSNWLLMY 115 (475)
T ss_pred ccCCCCCCEEEEehhhhHHh
Confidence 32222344555566665543
No 117
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.64 E-value=1.4e-07 Score=87.42 Aligned_cols=81 Identities=16% Similarity=0.218 Sum_probs=67.5
Q ss_pred EEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397 92 IYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171 (313)
Q Consensus 92 ~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~ 171 (313)
|..+......++..+++.++++|||+|||+|..|..+++. ..+|+|+|+++.+++.+++++...+..++++++.+|+
T Consensus 18 FL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da 94 (294)
T PTZ00338 18 ILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA 94 (294)
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH
Confidence 3344445566777888999999999999999999999986 2579999999999999999998877545899999999
Q ss_pred CCCC
Q 021397 172 TTFS 175 (313)
Q Consensus 172 ~~~d 175 (313)
..++
T Consensus 95 l~~~ 98 (294)
T PTZ00338 95 LKTE 98 (294)
T ss_pred hhhc
Confidence 6544
No 118
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.5e-07 Score=91.51 Aligned_cols=68 Identities=19% Similarity=0.294 Sum_probs=60.9
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
+..+++..++++|||+-||.|++|+.+|+. ..+|+|+|+++.+++.+++|++.+|+. |+++..+|+..
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~~~~ae~ 352 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGID-NVEFIAGDAEE 352 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEeCCHHH
Confidence 556677888999999999999999999964 368999999999999999999999997 59999999854
No 119
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.64 E-value=1.7e-07 Score=88.45 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=60.9
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccc
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSC 188 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~ 188 (313)
.++.+|||+|||+|..+..+++..+. ..|+++|+|+.+++.++++.. . .+++++.+|+..+++ .+..||.+.+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~-~~VtgVD~S~~mL~~A~~k~~---~-~~i~~i~gD~e~lp~--~~~sFDvVIs 184 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEP---L-KECKIIEGDAEDLPF--PTDYADRYVS 184 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhhh---c-cCCeEEeccHHhCCC--CCCceeEEEE
Confidence 46789999999999999999887653 689999999999999998754 2 257889999876553 1334454456
Q ss_pred cccccccc
Q 021397 189 NSVLQEKD 196 (313)
Q Consensus 189 sg~l~~~p 196 (313)
.++++..+
T Consensus 185 ~~~L~~~~ 192 (340)
T PLN02490 185 AGSIEYWP 192 (340)
T ss_pred cChhhhCC
Confidence 66554433
No 120
>PHA03411 putative methyltransferase; Provisional
Probab=98.63 E-value=2.3e-07 Score=84.46 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=55.6
Q ss_pred cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC------CCcccc
Q 021397 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT------FSLAPL 179 (313)
Q Consensus 106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~------~d~v~~ 179 (313)
+.++++.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++++ . +++++++|+.. ||.+++
T Consensus 60 ~~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-----~-~v~~v~~D~~e~~~~~kFDlIIs 132 (279)
T PHA03411 60 IDAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-----P-EAEWITSDVFEFESNEKFDVVIS 132 (279)
T ss_pred hccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-----c-CCEEEECchhhhcccCCCcEEEE
Confidence 3456678999999999999999888753 368999999999999998763 2 57888998854 555666
Q ss_pred cccc
Q 021397 180 RLLL 183 (313)
Q Consensus 180 D~~l 183 (313)
||.|
T Consensus 133 NPPF 136 (279)
T PHA03411 133 NPPF 136 (279)
T ss_pred cCCc
Confidence 6553
No 121
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=2.1e-07 Score=79.27 Aligned_cols=127 Identities=19% Similarity=0.207 Sum_probs=83.6
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcC------------------CHHHHHHHHHHHHHcCCCCcEEEEec
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDV------------------ARHRLAACRTLLQKYALGDRCRLFVA 169 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~------------------s~~~l~~~~~~~~~~g~~~~v~~~~~ 169 (313)
++|+++|||+||+||.|+....++.++.|.|.++|+ ++.....+.+.+ .- -.+.++..
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p~~Ga~~i~~~dvtdp~~~~ki~e~l---p~-r~VdvVlS 142 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEPPEGATIIQGNDVTDPETYRKIFEAL---PN-RPVDVVLS 142 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccCCCCcccccccccCCHHHHHHHHHhC---CC-CcccEEEe
Confidence 357999999999999999999999988899999996 333333333333 22 25777878
Q ss_pred CCCC----CCc----cccccc---cCccccccccccccc-ccccccccchhHHHH--HHHHHHHHHhhhhhccccCccee
Q 021397 170 DGTT----FSL----APLRLL---LDPGSCNSVLQEKDD-TFREWTSRIPWKERK--RAVKARENAASKAIVRSEHPELI 235 (313)
Q Consensus 170 D~~~----~d~----v~~D~~---l~~~s~sg~l~~~p~-~~~~w~~~~~~~~~~--~~~q~~~l~~~~~~~r~~~~El~ 235 (313)
|+.. +.. ..++-| +. ...-....+.. +.|.|.++....+.+ ...+..+..-++++.|.+|.|.|
T Consensus 143 DMapnaTGvr~~Dh~~~i~LC~s~l~--~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~f~~Vk~vKP~Asr~eS~E~y 220 (232)
T KOG4589|consen 143 DMAPNATGVRIRDHYRSIELCDSALL--FALTLLIPNGSFVCKLWDGSEEALLQRRLQAVFTNVKKVKPDASRDESAETY 220 (232)
T ss_pred ccCCCCcCcchhhHHHHHHHHHHHHH--HhhhhcCCCcEEEEEEecCCchHHHHHHHHHHhhhcEeeCCcccccccccee
Confidence 8743 110 011112 10 00001111111 678899888776543 66777777889999999999999
Q ss_pred EeecC
Q 021397 236 FYGRR 240 (313)
Q Consensus 236 ~~~k~ 240 (313)
++|..
T Consensus 221 ~v~~~ 225 (232)
T KOG4589|consen 221 LVCLN 225 (232)
T ss_pred eeeee
Confidence 99765
No 122
>PRK06202 hypothetical protein; Provisional
Probab=98.63 E-value=1.4e-07 Score=84.36 Aligned_cols=89 Identities=18% Similarity=0.080 Sum_probs=63.1
Q ss_pred HHhcCCCCCCEEEEECCCcChHHHHHHHHhC---CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIG---DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL 179 (313)
Q Consensus 103 ~~~l~~~~g~~VLDlcagpG~kt~~la~~~~---~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~ 179 (313)
...+...++.+|||+|||+|..+..+++... ...+|+|+|+|+.+++.++++....+ +.+...|+..++. .
T Consensus 53 ~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~~~l~~--~ 126 (232)
T PRK06202 53 RPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVSDELVA--E 126 (232)
T ss_pred HHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEecccccc--c
Confidence 3344446778999999999999999987653 23489999999999999988754333 4455555544442 2
Q ss_pred ccccCccccccccccccc
Q 021397 180 RLLLDPGSCNSVLQEKDD 197 (313)
Q Consensus 180 D~~l~~~s~sg~l~~~p~ 197 (313)
+..||.+.|+.++++-++
T Consensus 127 ~~~fD~V~~~~~lhh~~d 144 (232)
T PRK06202 127 GERFDVVTSNHFLHHLDD 144 (232)
T ss_pred CCCccEEEECCeeecCCh
Confidence 456676688887766554
No 123
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.62 E-value=7.5e-08 Score=89.01 Aligned_cols=68 Identities=24% Similarity=0.307 Sum_probs=60.1
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
+...+.+++|+.++|++||.||.|..+++..++.+.|+|+|.++.+++.++++++. . ++++++++|..
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~-~ri~~i~~~f~ 78 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--F-GRFTLVHGNFS 78 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--C-CcEEEEeCCHH
Confidence 55677889999999999999999999999987678999999999999999988865 2 47999998874
No 124
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.62 E-value=1.1e-08 Score=78.81 Aligned_cols=81 Identities=21% Similarity=0.196 Sum_probs=47.8
Q ss_pred EEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccccccccc
Q 021397 115 LDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQE 194 (313)
Q Consensus 115 LDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg~l~~ 194 (313)
||+|||+|..+..+++..+ ..+++++|+|+.+++.+++++...+.. +......+............||.+.+.+++++
T Consensus 1 LdiGcG~G~~~~~l~~~~~-~~~~~~~D~s~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~ 78 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-DARYTGVDISPSMLERARERLAELGND-NFERLRFDVLDLFDYDPPESFDLVVASNVLHH 78 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS-
T ss_pred CEeCccChHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHhhhcCCc-ceeEEEeecCChhhcccccccceehhhhhHhh
Confidence 7999999999999999874 589999999999999999999888754 34444333222111000024555577777766
Q ss_pred ccc
Q 021397 195 KDD 197 (313)
Q Consensus 195 ~p~ 197 (313)
.++
T Consensus 79 l~~ 81 (99)
T PF08242_consen 79 LED 81 (99)
T ss_dssp -S-
T ss_pred hhh
Confidence 543
No 125
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.62 E-value=7.1e-07 Score=76.87 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCc--------EEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 021397 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSG--------SVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168 (313)
Q Consensus 97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~--------~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~ 168 (313)
.-|..++.+.++++|+.|||-+||+|+..+..+....+.. .++|.|+++++++.+++|++.+|+.+.+.+.+
T Consensus 15 ~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~ 94 (179)
T PF01170_consen 15 TLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQ 94 (179)
T ss_dssp HHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE
T ss_pred HHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEe
Confidence 3345566778899999999999999999998887765433 38999999999999999999999987899999
Q ss_pred cCCCCCC
Q 021397 169 ADGTTFS 175 (313)
Q Consensus 169 ~D~~~~d 175 (313)
.|++.++
T Consensus 95 ~D~~~l~ 101 (179)
T PF01170_consen 95 WDARELP 101 (179)
T ss_dssp --GGGGG
T ss_pred cchhhcc
Confidence 9998766
No 126
>PHA03412 putative methyltransferase; Provisional
Probab=98.62 E-value=2.2e-07 Score=82.86 Aligned_cols=85 Identities=15% Similarity=0.217 Sum_probs=62.1
Q ss_pred eEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhC--CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 021397 91 KIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG--DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168 (313)
Q Consensus 91 ~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~--~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~ 168 (313)
+|.....+..++.. ...+.+|||+|||+|..+..+++.+. ....|+|+|+++.+++.+++|+. ++.++.
T Consensus 33 FfTP~~iAr~~~i~---~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~ 103 (241)
T PHA03412 33 FFTPIGLARDFTID---ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWIN 103 (241)
T ss_pred cCCCHHHHHHHHHh---ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEE
Confidence 44455555544322 23478999999999999999998753 24689999999999999998752 467888
Q ss_pred cCCC------CCCccccccccC
Q 021397 169 ADGT------TFSLAPLRLLLD 184 (313)
Q Consensus 169 ~D~~------~~d~v~~D~~l~ 184 (313)
+|+. .||.|..+|-|.
T Consensus 104 ~D~~~~~~~~~FDlIIsNPPY~ 125 (241)
T PHA03412 104 ADALTTEFDTLFDMAISNPPFG 125 (241)
T ss_pred cchhcccccCCccEEEECCCCC
Confidence 8874 366777775544
No 127
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.62 E-value=7.3e-08 Score=86.19 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=59.1
Q ss_pred CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-----cEEEEecCCCCCCcccccc
Q 021397 107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD-----RCRLFVADGTTFSLAPLRL 181 (313)
Q Consensus 107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-----~v~~~~~D~~~~d~v~~D~ 181 (313)
.+..|.+|||+|||.|-.|.+||+. +..|+|+|+++.+++.+++........+ ++++.+.|++.+- +
T Consensus 86 k~~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~-----~ 157 (282)
T KOG1270|consen 86 KPLLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT-----G 157 (282)
T ss_pred cccCCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc-----c
Confidence 3445789999999999999999986 3689999999999999998833322211 2444444544321 4
Q ss_pred ccCccccccccccccc
Q 021397 182 LLDPGSCNSVLQEKDD 197 (313)
Q Consensus 182 ~l~~~s~sg~l~~~p~ 197 (313)
+||.+.|+-++.|-.+
T Consensus 158 ~fDaVvcsevleHV~d 173 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKD 173 (282)
T ss_pred ccceeeeHHHHHHHhC
Confidence 4666689888866543
No 128
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.62 E-value=1e-07 Score=93.06 Aligned_cols=67 Identities=15% Similarity=0.213 Sum_probs=59.0
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
+...+.+.++++|||+|||+|..++.+++.. ..|+|+|+++.+++.+++|++.+++. +++++.+|+.
T Consensus 284 ~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~~ 350 (431)
T TIGR00479 284 ALEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTLE 350 (431)
T ss_pred HHHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCHH
Confidence 3445567788999999999999999999863 58999999999999999999999985 7999999974
No 129
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.61 E-value=1.2e-07 Score=83.07 Aligned_cols=71 Identities=15% Similarity=0.094 Sum_probs=58.4
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC--------CCCccccc
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT--------TFSLAPLR 180 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~--------~~d~v~~D 180 (313)
.++.+|||+|||+|..++.++... ..+|+++|+++..++.+++|++.+++. +++++++|+. .||.+++|
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~-~v~~~~~D~~~~l~~~~~~fDlV~~D 128 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAG-NARVVNTNALSFLAQPGTPHNVVFVD 128 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEEchHHHHHhhcCCCceEEEEC
Confidence 568899999999999998655432 368999999999999999999999985 7999999873 25666666
Q ss_pred cc
Q 021397 181 LL 182 (313)
Q Consensus 181 ~~ 182 (313)
|-
T Consensus 129 PP 130 (199)
T PRK10909 129 PP 130 (199)
T ss_pred CC
Confidence 44
No 130
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.61 E-value=1.7e-07 Score=85.97 Aligned_cols=62 Identities=13% Similarity=0.223 Sum_probs=50.1
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCC--cEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDS--GSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~--~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
.++.+|||+|||+|..+..+++..+.. ..|+|+|+|+.+++.++++. . ++.+..+|+..+++
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~-~~~~~~~d~~~lp~ 147 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----P-QVTFCVASSHRLPF 147 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----C-CCeEEEeecccCCC
Confidence 456789999999999999999876532 37999999999999987542 2 57889999877653
No 131
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=3.8e-07 Score=83.99 Aligned_cols=70 Identities=23% Similarity=0.389 Sum_probs=58.4
Q ss_pred cccCCeEEEecHHHHHHHHhcC--CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397 86 AYKQGKIYGIDAASGAAVSALN--ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG 161 (313)
Q Consensus 86 ~~~~G~~~~Qd~ss~~~~~~l~--~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~ 161 (313)
+|-+|. -+...+..++++ .++|.+|||+|||+|-.++.++++ + ...|+|+|+++-.++.+++|++++++.
T Consensus 140 AFGTG~----HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL-G-A~~v~g~DiDp~AV~aa~eNa~~N~v~ 211 (300)
T COG2264 140 AFGTGT----HPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL-G-AKKVVGVDIDPQAVEAARENARLNGVE 211 (300)
T ss_pred ccCCCC----ChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc-C-CceEEEecCCHHHHHHHHHHHHHcCCc
Confidence 455665 456667777765 568999999999999999988875 3 468999999999999999999999986
No 132
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.61 E-value=2e-07 Score=81.14 Aligned_cols=73 Identities=22% Similarity=0.248 Sum_probs=57.8
Q ss_pred ecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+.++-.+++. +.+.+-.+|.|+|||||..|..++++.+. ..|+|+|-|+.|++.+++.+ . ++++..+|...+
T Consensus 16 tRPa~dLla~-Vp~~~~~~v~DLGCGpGnsTelL~~RwP~-A~i~GiDsS~~Mla~Aa~rl-----p-~~~f~~aDl~~w 87 (257)
T COG4106 16 TRPARDLLAR-VPLERPRRVVDLGCGPGNSTELLARRWPD-AVITGIDSSPAMLAKAAQRL-----P-DATFEEADLRTW 87 (257)
T ss_pred cCcHHHHHhh-CCccccceeeecCCCCCHHHHHHHHhCCC-CeEeeccCCHHHHHHHHHhC-----C-CCceecccHhhc
Confidence 4445455443 34566789999999999999999999875 79999999999999987543 2 688999998765
Q ss_pred C
Q 021397 175 S 175 (313)
Q Consensus 175 d 175 (313)
.
T Consensus 88 ~ 88 (257)
T COG4106 88 K 88 (257)
T ss_pred C
Confidence 3
No 133
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=3e-07 Score=82.55 Aligned_cols=83 Identities=19% Similarity=0.262 Sum_probs=74.1
Q ss_pred cCCeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 021397 88 KQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167 (313)
Q Consensus 88 ~~G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~ 167 (313)
.+-..|.-|.+ ++...|++.||.+|++.|.|+|+.+..+++.+++.|+++..|++..|.+.+.+.+++.|+.++++++
T Consensus 85 RTQI~Yt~Dia--~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~ 162 (314)
T KOG2915|consen 85 RTQILYTPDIA--MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVT 162 (314)
T ss_pred cceEEecccHH--HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEE
Confidence 44455555543 5677899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 021397 168 VADGT 172 (313)
Q Consensus 168 ~~D~~ 172 (313)
+-|..
T Consensus 163 hrDVc 167 (314)
T KOG2915|consen 163 HRDVC 167 (314)
T ss_pred Eeecc
Confidence 98875
No 134
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.60 E-value=4e-07 Score=80.09 Aligned_cols=79 Identities=8% Similarity=0.075 Sum_probs=71.2
Q ss_pred EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
+=+...+++..++......++||+|.-+|..++..|..++..|+|+++|+++...+...+..+..|..++|.++++++.
T Consensus 57 v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~ 135 (237)
T KOG1663|consen 57 VGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPAL 135 (237)
T ss_pred cChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchh
Confidence 3356677777777777788999999999999999999999999999999999999999999999999999999999884
No 135
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.60 E-value=1.5e-07 Score=86.32 Aligned_cols=73 Identities=21% Similarity=0.262 Sum_probs=60.8
Q ss_pred cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 96 d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
..-...++..+++.++++|||+|||+|..|..+++.. .+|+|+|+++.+++.+++++.. ++++++++|+..++
T Consensus 28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~ 100 (272)
T PRK00274 28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVD 100 (272)
T ss_pred HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCC
Confidence 3344556677888999999999999999999999873 3899999999999999987642 37999999997655
No 136
>PRK05785 hypothetical protein; Provisional
Probab=98.59 E-value=2.6e-07 Score=82.56 Aligned_cols=75 Identities=17% Similarity=0.117 Sum_probs=58.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccc
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN 189 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~s 189 (313)
++.+|||+|||+|..+..+++.. .+.|+|+|+|++|++.+++. ...+++|+..+++ .|..||.+.++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~--~d~sfD~v~~~ 117 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPF--RDKSFDVVMSS 117 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhc---------cceEEechhhCCC--CCCCEEEEEec
Confidence 47899999999999999998875 36899999999999998753 1246788887764 35667766887
Q ss_pred cccccccc
Q 021397 190 SVLQEKDD 197 (313)
Q Consensus 190 g~l~~~p~ 197 (313)
.++++.++
T Consensus 118 ~~l~~~~d 125 (226)
T PRK05785 118 FALHASDN 125 (226)
T ss_pred ChhhccCC
Confidence 77765444
No 137
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.58 E-value=2.7e-07 Score=87.77 Aligned_cols=58 Identities=10% Similarity=0.181 Sum_probs=52.4
Q ss_pred CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
.+|||+|||+|.+++.+++.. ..|+|+|+++.+++.+++|++.+++. +++++.+|+..
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHH
Confidence 479999999999999999864 48999999999999999999999986 69999999754
No 138
>PLN02672 methionine S-methyltransferase
Probab=98.57 E-value=3.7e-07 Score=96.92 Aligned_cols=91 Identities=18% Similarity=0.065 Sum_probs=67.3
Q ss_pred cCCeEEEecHHHHHHHHhcCCC-----CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-
Q 021397 88 KQGKIYGIDAASGAAVSALNIS-----AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG- 161 (313)
Q Consensus 88 ~~G~~~~Qd~ss~~~~~~l~~~-----~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~- 161 (313)
..|-+.+.+.+-.+ ++.+... ++.+|||+|||+|..++.+++..++ .+|+|+|+|+.+++.+++|+++++++
T Consensus 92 ~p~VLIPRpeTE~l-ve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~n~l~~ 169 (1082)
T PLN02672 92 IPSIFIPEDWSFTF-YEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYLNALDD 169 (1082)
T ss_pred CCCcccCchhHHHH-HHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCccc
Confidence 34455555544444 4434422 2468999999999999999998754 69999999999999999999987542
Q ss_pred --------------CcEEEEecCCCC--------CCccccc
Q 021397 162 --------------DRCRLFVADGTT--------FSLAPLR 180 (313)
Q Consensus 162 --------------~~v~~~~~D~~~--------~d~v~~D 180 (313)
++++++++|... ||.+..+
T Consensus 170 ~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSN 210 (1082)
T PLN02672 170 DGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGC 210 (1082)
T ss_pred ccccccccccccccccEEEEECchhhhccccCCceEEEEEC
Confidence 469999999732 5666666
No 139
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.57 E-value=1.9e-07 Score=81.18 Aligned_cols=60 Identities=17% Similarity=0.110 Sum_probs=54.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~ 171 (313)
+|.+|||+|||+|..++.++.+. ...|+++|.++..++.+++|++.+++.++++++++|+
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~ 108 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA 108 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH
Confidence 58899999999999999999862 3589999999999999999999999876799999998
No 140
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.57 E-value=2.9e-07 Score=78.32 Aligned_cols=69 Identities=23% Similarity=0.337 Sum_probs=59.1
Q ss_pred HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
.++..+++.++++|||+|||+|..|..+++. .++|+|+|+++.+++.+++++.. . ++++++++|+..++
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~-~~v~ii~~D~~~~~ 72 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--A-DNLTVIHGDALKFD 72 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--C-CCEEEEECchhcCC
Confidence 3556778889999999999999999999987 26899999999999999998854 2 37999999997765
No 141
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.55 E-value=8e-07 Score=78.90 Aligned_cols=79 Identities=18% Similarity=0.157 Sum_probs=61.3
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccc
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS 187 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s 187 (313)
..++.+|||+|||+|..+..+++. ...|+++|+|+.+++.+++++...+..+++.+..+|.... +..||.+.
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-----~~~fD~v~ 132 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL-----LGRFDTVV 132 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc-----cCCcCEEE
Confidence 356789999999999999999875 2579999999999999999998888755789998884321 23455556
Q ss_pred ccccccc
Q 021397 188 CNSVLQE 194 (313)
Q Consensus 188 ~sg~l~~ 194 (313)
+..++.+
T Consensus 133 ~~~~l~~ 139 (230)
T PRK07580 133 CLDVLIH 139 (230)
T ss_pred Ecchhhc
Confidence 6665543
No 142
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.55 E-value=8.1e-07 Score=79.26 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=65.7
Q ss_pred HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccc
Q 021397 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL 179 (313)
Q Consensus 100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~ 179 (313)
.++...+.+.++.+|||+|||+|..+..+++. ...|+++|+++.+++.+++++...+. ++.++..|+..+... .
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~-~ 111 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAE-H 111 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhh-c
Confidence 45555556678899999999999999988875 25799999999999999999888776 577887777654311 1
Q ss_pred ccccCcccccccccccc
Q 021397 180 RLLLDPGSCNSVLQEKD 196 (313)
Q Consensus 180 D~~l~~~s~sg~l~~~p 196 (313)
+..||.+.++.++...+
T Consensus 112 ~~~fD~Ii~~~~l~~~~ 128 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVP 128 (233)
T ss_pred CCCccEEEEhhHhhccC
Confidence 12344445655554433
No 143
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.54 E-value=1.3e-07 Score=81.78 Aligned_cols=72 Identities=29% Similarity=0.328 Sum_probs=56.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC-----------CCCCccc
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG-----------TTFSLAP 178 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~-----------~~~d~v~ 178 (313)
+|.+|||++||+|..++..+.+ +...|+.||.++..+..+++|++..+..++++++..|+ ..||+++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIf 119 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIF 119 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEE
Confidence 7999999999999999988775 34689999999999999999999999987799999995 3578888
Q ss_pred ccccc
Q 021397 179 LRLLL 183 (313)
Q Consensus 179 ~D~~l 183 (313)
+||-+
T Consensus 120 lDPPY 124 (183)
T PF03602_consen 120 LDPPY 124 (183)
T ss_dssp E--ST
T ss_pred ECCCc
Confidence 88653
No 144
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.53 E-value=5.9e-07 Score=83.90 Aligned_cols=75 Identities=23% Similarity=0.333 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec-CCCCCCc
Q 021397 98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA-DGTTFSL 176 (313)
Q Consensus 98 ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~-D~~~~d~ 176 (313)
-|...+.+..+++|+.|||=.||||+....+.- +| ..++|+|++..|++-++.|++.+++. ...+... |++..++
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~G--~~viG~Did~~mv~gak~Nl~~y~i~-~~~~~~~~Da~~lpl 260 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGL-MG--ARVIGSDIDERMVRGAKINLEYYGIE-DYPVLKVLDATNLPL 260 (347)
T ss_pred HHHHHHHHhccccCCEeecCcCCccHHHHhhhh-cC--ceEeecchHHHHHhhhhhhhhhhCcC-ceeEEEecccccCCC
Confidence 356677888899999999999999999876654 44 78999999999999999999999986 4655555 9987663
No 145
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.53 E-value=4.4e-07 Score=82.64 Aligned_cols=76 Identities=14% Similarity=0.080 Sum_probs=63.1
Q ss_pred EecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 94 ~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
+.......++..+++.++++|||+|||+|..|..+++. ...|+|+|+++.+++.++++++. . ++++++++|+..
T Consensus 13 ~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~ 86 (258)
T PRK14896 13 IDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALK 86 (258)
T ss_pred CCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEecccc
Confidence 33444566777788889999999999999999999987 25899999999999999988754 2 379999999976
Q ss_pred CC
Q 021397 174 FS 175 (313)
Q Consensus 174 ~d 175 (313)
++
T Consensus 87 ~~ 88 (258)
T PRK14896 87 VD 88 (258)
T ss_pred CC
Confidence 54
No 146
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.52 E-value=7.8e-07 Score=78.74 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=48.7
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC--------------CCcEEEEecCCCCC
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL--------------GDRCRLFVADGTTF 174 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~--------------~~~v~~~~~D~~~~ 174 (313)
.++.+|||+|||.|.-+..+|++ +-.|+|+|+|+.+++.+.+. .++ ..+|+++++|+..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAE---NGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHH---cCCCcceeccccceeeecCceEEEEccCCCC
Confidence 57789999999999999999974 36899999999999976432 221 12588899998776
Q ss_pred C
Q 021397 175 S 175 (313)
Q Consensus 175 d 175 (313)
+
T Consensus 107 ~ 107 (213)
T TIGR03840 107 T 107 (213)
T ss_pred C
Confidence 5
No 147
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.51 E-value=3.8e-07 Score=85.54 Aligned_cols=91 Identities=15% Similarity=0.198 Sum_probs=72.9
Q ss_pred cccccccCCeEEEecHHHHH-----------HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHH
Q 021397 82 ATSMAYKQGKIYGIDAASGA-----------AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAA 150 (313)
Q Consensus 82 ~~~~~~~~G~~~~Qd~ss~~-----------~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~ 150 (313)
..+-.-..|..+-.|.+..+ ++.. ..+|+.|+||.||-|.+|+.+|..-. ..|+|+|+++..++.
T Consensus 151 teTihrE~G~~f~vD~~Kv~Fsprl~~ER~Rva~~--v~~GE~V~DmFAGVGpfsi~~Ak~g~--~~V~A~diNP~A~~~ 226 (341)
T COG2520 151 TETIHRENGCRFKVDVAKVYFSPRLSTERARVAEL--VKEGETVLDMFAGVGPFSIPIAKKGR--PKVYAIDINPDAVEY 226 (341)
T ss_pred ceEEEecCCEEEEEchHHeEECCCchHHHHHHHhh--hcCCCEEEEccCCcccchhhhhhcCC--ceEEEEecCHHHHHH
Confidence 44555567777778877422 2222 35699999999999999999998732 349999999999999
Q ss_pred HHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397 151 CRTLLQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 151 ~~~~~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
+++|++.+++.+.+..+++|++.+..
T Consensus 227 L~eNi~LN~v~~~v~~i~gD~rev~~ 252 (341)
T COG2520 227 LKENIRLNKVEGRVEPILGDAREVAP 252 (341)
T ss_pred HHHHHHhcCccceeeEEeccHHHhhh
Confidence 99999999998779999999977654
No 148
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.51 E-value=2.6e-07 Score=88.55 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=55.7
Q ss_pred cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
++..++.+|||+|||+|..++.++.. ...|+|+|+++.+++.+++|++.+++. +++++.+|+..
T Consensus 229 l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~ 292 (374)
T TIGR02085 229 VREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAK 292 (374)
T ss_pred HHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHH
Confidence 44456789999999999999999964 358999999999999999999999986 79999999743
No 149
>PRK04457 spermidine synthase; Provisional
Probab=98.50 E-value=1.2e-06 Score=80.12 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=53.8
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
.++.+|||+|||.|..+..+++..+ ..+|+++|+++.+++.+++++...+..++++++.+|+.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p-~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~ 127 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLP-DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGA 127 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHH
Confidence 4567999999999999999998875 47999999999999999998765544458999999984
No 150
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.50 E-value=4.6e-07 Score=84.77 Aligned_cols=79 Identities=16% Similarity=0.081 Sum_probs=60.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC----CCcEEEEecCCCCCCccccccccCc
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL----GDRCRLFVADGTTFSLAPLRLLLDP 185 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~----~~~v~~~~~D~~~~d~v~~D~~l~~ 185 (313)
+|.+|||+|||+|..+..+++. ...|+|+|+|+.|++.++++++..+. ..++++...|...+ +..||.
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l-----~~~fD~ 215 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL-----SGKYDT 215 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc-----CCCcCE
Confidence 5789999999999999999974 35899999999999999999877532 12577888887543 334555
Q ss_pred ccccccccccc
Q 021397 186 GSCNSVLQEKD 196 (313)
Q Consensus 186 ~s~sg~l~~~p 196 (313)
+.|..++.+.|
T Consensus 216 Vv~~~vL~H~p 226 (315)
T PLN02585 216 VTCLDVLIHYP 226 (315)
T ss_pred EEEcCEEEecC
Confidence 57777765544
No 151
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.49 E-value=5.3e-07 Score=76.59 Aligned_cols=62 Identities=23% Similarity=0.254 Sum_probs=54.3
Q ss_pred CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+|||+|||.|..-..|++.- =.+.++++|.|++.++.|+..+++.++.+.|++.+.|....
T Consensus 69 ~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~ 130 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP 130 (227)
T ss_pred cceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC
Confidence 499999999999999998753 24569999999999999999999999987799999998753
No 152
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.49 E-value=4.1e-07 Score=79.47 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=52.7
Q ss_pred CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
..+||+|||.|.+...+|...++ ..++|+|++..++..+.+.+.+.++. |+.++++|+..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd-~n~iGiE~~~~~v~~a~~~~~~~~l~-Nv~~~~~da~~ 78 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPD-INFIGIEIRKKRVAKALRKAEKRGLK-NVRFLRGDARE 78 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTT-SEEEEEES-HHHHHHHHHHHHHHTTS-SEEEEES-CTT
T ss_pred CeEEEecCCCCHHHHHHHHHCCC-CCEEEEecchHHHHHHHHHHHhhccc-ceEEEEccHHH
Confidence 38999999999999999998764 78999999999999999999999996 89999999976
No 153
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.49 E-value=3.7e-07 Score=80.28 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=59.4
Q ss_pred CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcc
Q 021397 107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPG 186 (313)
Q Consensus 107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~ 186 (313)
.+.++.+|||+|||+|..+..+++..+ ...++|+|+|+.+++.+++++ . ++.+..+|+.. +. .+..||.+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~-----~-~~~~~~~d~~~-~~--~~~sfD~V 109 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL-----P-NINIIQGSLFD-PF--KDNFFDLV 109 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC-----C-CCcEEEeeccC-CC--CCCCEEEE
Confidence 345678999999999999999988764 378999999999999998763 1 46677888765 22 24455555
Q ss_pred cccccccc
Q 021397 187 SCNSVLQE 194 (313)
Q Consensus 187 s~sg~l~~ 194 (313)
.+.+++.+
T Consensus 110 ~~~~vL~h 117 (204)
T TIGR03587 110 LTKGVLIH 117 (204)
T ss_pred EECChhhh
Confidence 77777654
No 154
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.48 E-value=1.1e-06 Score=77.71 Aligned_cols=79 Identities=19% Similarity=0.204 Sum_probs=58.4
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCcccc
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSC 188 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~ 188 (313)
..+.+|||+|||+|..+..+++. ...++++|+++.+++.+++++...+.. ++.+...|+..+.... +..+|.+.+
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~-~~~~D~i~~ 118 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKG-AKSFDVVTC 118 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhcCC-CCCccEEEe
Confidence 35789999999999999988874 246999999999999999999887764 5888888876543211 123444445
Q ss_pred cccc
Q 021397 189 NSVL 192 (313)
Q Consensus 189 sg~l 192 (313)
..++
T Consensus 119 ~~~l 122 (224)
T TIGR01983 119 MEVL 122 (224)
T ss_pred hhHH
Confidence 4444
No 155
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.47 E-value=1.2e-06 Score=80.11 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=57.1
Q ss_pred CCCCEEEEECCCcCh----HHHHHHHHhCC----CcEEEEEcCCHHHHHHHHHHHH------Hc----------------
Q 021397 109 SAGDHVLDLCAAPGA----KLCMILDIIGD----SGSVTGVDVARHRLAACRTLLQ------KY---------------- 158 (313)
Q Consensus 109 ~~g~~VLDlcagpG~----kt~~la~~~~~----~~~V~avD~s~~~l~~~~~~~~------~~---------------- 158 (313)
.++.+|||+|||+|. .+..+++..+. ..+|+|+|+|+.+++.+++.+- ..
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 355799999999996 45566665442 4689999999999999997531 00
Q ss_pred ----CCCCcEEEEecCCCCCCccccccccCcccccccccc
Q 021397 159 ----ALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQE 194 (313)
Q Consensus 159 ----g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg~l~~ 194 (313)
.+.++|.+.++|+...+. .+..||.+.|..++..
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~--~~~~fD~I~crnvl~y 215 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESP--PLGDFDLIFCRNVLIY 215 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCC--ccCCCCEEEechhHHh
Confidence 012367888888876543 2345666677666543
No 156
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.47 E-value=1.1e-06 Score=75.65 Aligned_cols=84 Identities=25% Similarity=0.239 Sum_probs=69.5
Q ss_pred HHHHHHHhcCC--CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC---
Q 021397 98 ASGAAVSALNI--SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT--- 172 (313)
Q Consensus 98 ss~~~~~~l~~--~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~--- 172 (313)
.-..+...+.+ -+|.++||++||+|+.++..+.+ +...++.+|.+...+..+++|++.+++..+++++..|+.
T Consensus 29 VREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L 106 (187)
T COG0742 29 VREALFNILAPDEIEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL 106 (187)
T ss_pred HHHHHHHhccccccCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH
Confidence 33344455655 47999999999999999998886 346899999999999999999999997778999999973
Q ss_pred -------CCCcccccccc
Q 021397 173 -------TFSLAPLRLLL 183 (313)
Q Consensus 173 -------~~d~v~~D~~l 183 (313)
.||+|++||-|
T Consensus 107 ~~~~~~~~FDlVflDPPy 124 (187)
T COG0742 107 KQLGTREPFDLVFLDPPY 124 (187)
T ss_pred HhcCCCCcccEEEeCCCC
Confidence 38888888664
No 157
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.46 E-value=5e-07 Score=86.27 Aligned_cols=59 Identities=10% Similarity=0.182 Sum_probs=52.7
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
+.+|||+|||+|.+|+.+++.. ..|+|+|+++.+++.+++|++.+++. +++++.+|+..
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~ 265 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEE 265 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHH
Confidence 3579999999999999998763 48999999999999999999999986 79999999743
No 158
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.46 E-value=5e-07 Score=78.07 Aligned_cols=91 Identities=19% Similarity=0.117 Sum_probs=59.1
Q ss_pred EEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 93 ~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
|=|..-.+.+...|.-..-.++||+|||.|..|..||.+. ..++|+|+|+..++.++++++.. . +|++.+.|..
T Consensus 26 YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~--~-~V~~~~~dvp 99 (201)
T PF05401_consen 26 YERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL--P-HVEWIQADVP 99 (201)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---S-SEEEEES-TT
T ss_pred HHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC--C-CeEEEECcCC
Confidence 3344333444444544455789999999999999999874 58999999999999999887643 3 7999999986
Q ss_pred CCCccccccccCcccccccc
Q 021397 173 TFSLAPLRLLLDPGSCNSVL 192 (313)
Q Consensus 173 ~~d~v~~D~~l~~~s~sg~l 192 (313)
.+. .+..||.+.+|.++
T Consensus 100 ~~~---P~~~FDLIV~SEVl 116 (201)
T PF05401_consen 100 EFW---PEGRFDLIVLSEVL 116 (201)
T ss_dssp T------SS-EEEEEEES-G
T ss_pred CCC---CCCCeeEEEEehHh
Confidence 642 12344444555544
No 159
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.44 E-value=1.7e-06 Score=83.00 Aligned_cols=80 Identities=19% Similarity=0.183 Sum_probs=62.9
Q ss_pred HHHHHhcCCC-CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC------
Q 021397 100 GAAVSALNIS-AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT------ 172 (313)
Q Consensus 100 ~~~~~~l~~~-~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~------ 172 (313)
.+++..+... ++.+|||++||+|..++.++...+ ...|+++|+++..++.+++|++.+++. +++++++|+.
T Consensus 46 ~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~ 123 (382)
T PRK04338 46 VLVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEE 123 (382)
T ss_pred HHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhc
Confidence 3444444433 457999999999999999988764 358999999999999999999999986 5789999974
Q ss_pred -CCCcccccc
Q 021397 173 -TFSLAPLRL 181 (313)
Q Consensus 173 -~~d~v~~D~ 181 (313)
.||.+.+||
T Consensus 124 ~~fD~V~lDP 133 (382)
T PRK04338 124 RKFDVVDIDP 133 (382)
T ss_pred CCCCEEEECC
Confidence 355555554
No 160
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=6e-07 Score=87.05 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=65.9
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccccc
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRL 181 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~ 181 (313)
+-+.+++.++..++|+|||+|..++.+|+.. .+|+++++++..++-|+.|++.+|+. |++++++-++..--.++++
T Consensus 375 i~e~~~l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~ 450 (534)
T KOG2187|consen 375 IGEWAGLPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFPSLLTP 450 (534)
T ss_pred HHHHhCCCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccchhccc
Confidence 4566788889999999999999999999864 68999999999999999999999997 7999999666543334456
Q ss_pred ccC
Q 021397 182 LLD 184 (313)
Q Consensus 182 ~l~ 184 (313)
|++
T Consensus 451 ~~~ 453 (534)
T KOG2187|consen 451 CCD 453 (534)
T ss_pred CCC
Confidence 543
No 161
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.41 E-value=3.1e-06 Score=75.24 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=49.4
Q ss_pred CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC--------------CCcEEEEecCCC
Q 021397 107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL--------------GDRCRLFVADGT 172 (313)
Q Consensus 107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~--------------~~~v~~~~~D~~ 172 (313)
.+.++.+|||+|||.|.-+..+|+. +..|+|+|+|+..++.+.+ +.++ ..+|++.++|+.
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~ 107 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFF 107 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECccc
Confidence 4456789999999999999999974 3689999999999998642 2222 236888899987
Q ss_pred CCC
Q 021397 173 TFS 175 (313)
Q Consensus 173 ~~d 175 (313)
.++
T Consensus 108 ~l~ 110 (218)
T PRK13255 108 ALT 110 (218)
T ss_pred CCC
Confidence 663
No 162
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.40 E-value=1.4e-06 Score=72.51 Aligned_cols=84 Identities=23% Similarity=0.204 Sum_probs=56.5
Q ss_pred HHHHHHHhcC-CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397 98 ASGAAVSALN-ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 98 ss~~~~~~l~-~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
-+.++..+.. ..++.+|||+|||.|..+..+++. ..+++++|+++.+++. . ++.....+....+
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~---------~--~~~~~~~~~~~~~- 73 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK---------R--NVVFDNFDAQDPP- 73 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH---------T--TSEEEEEECHTHH-
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh---------h--hhhhhhhhhhhhh-
Confidence 3445555554 567899999999999999999664 2489999999999987 1 2333333322111
Q ss_pred cccccccCccccccccccccc
Q 021397 177 APLRLLLDPGSCNSVLQEKDD 197 (313)
Q Consensus 177 v~~D~~l~~~s~sg~l~~~p~ 197 (313)
..+..||.+.|..++.+.++
T Consensus 74 -~~~~~fD~i~~~~~l~~~~d 93 (161)
T PF13489_consen 74 -FPDGSFDLIICNDVLEHLPD 93 (161)
T ss_dssp -CHSSSEEEEEEESSGGGSSH
T ss_pred -ccccchhhHhhHHHHhhccc
Confidence 12345555688888877765
No 163
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.37 E-value=3.8e-08 Score=84.57 Aligned_cols=129 Identities=22% Similarity=0.218 Sum_probs=67.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHH-----------------HHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHR-----------------LAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~-----------------l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
++.+|||+||||||+|..+.+..+..+.|+|+|+.+.. .+.+++.+...+ ..++++..|+.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~--~~~dlv~~D~~ 100 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPLQNVSFIQGDITNPENIKDIRKLLPESG--EKFDLVLSDMA 100 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS-TTEEBTTGGGEEEEHSHHGGGSHGTTT--CSESEEEE---
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEeccccccccceeeeecccchhhHHHhhhhhccccc--cCcceeccccc
Confidence 45899999999999999999987556899999998761 111111111000 13444444441
Q ss_pred CC-Cc-cccc------cccC-ccccccccccccc-ccccccccchhH--HHHHHHHHHHHHhhhhhccccCcceeEeecC
Q 021397 173 TF-SL-APLR------LLLD-PGSCNSVLQEKDD-TFREWTSRIPWK--ERKRAVKARENAASKAIVRSEHPELIFYGRR 240 (313)
Q Consensus 173 ~~-d~-v~~D------~~l~-~~s~sg~l~~~p~-~~~~w~~~~~~~--~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~ 240 (313)
.- .. ...| -++. ...+...++.... +++.+....... ....+.|..+...++..+|++++|+|+++++
T Consensus 101 ~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~~~~~~~l~~~F~~v~~~Kp~~sr~~s~E~Ylv~~~ 180 (181)
T PF01728_consen 101 PNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEIEELIYLLKRCFSKVKIVKPPSSRSESSEEYLVCRG 180 (181)
T ss_dssp ----SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTSHHHHHHHHHHHHHEEEEE-TTSBTTCBEEEEESEE
T ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccHHHHHHHHHhCCeEEEEEECcCCCCCccEEEEEEcC
Confidence 10 00 0000 0000 0011112233332 445555433322 2235667777677888889999999998764
No 164
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.36 E-value=4.4e-06 Score=62.75 Aligned_cols=60 Identities=27% Similarity=0.376 Sum_probs=48.0
Q ss_pred EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 113 ~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
+|+|+|||+|..+..+++ .....++++|+++..++.+++.....+. .++.++..|...+.
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 60 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLA-DNVEVLKGDAEELP 60 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccc-cceEEEEcChhhhc
Confidence 489999999999999987 2357999999999999998865444444 36889988886654
No 165
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.34 E-value=2e-06 Score=78.08 Aligned_cols=73 Identities=25% Similarity=0.275 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397 98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 98 ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
....++..+++.++++|||+|||+|..|..+++.. ..|+++|+++.+++.+++++.. ..+++++++|+..++.
T Consensus 17 i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 17 VIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDL 89 (253)
T ss_pred HHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCCh
Confidence 34456667788899999999999999999999875 3599999999999999987643 2379999999987654
No 166
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1.1e-05 Score=68.58 Aligned_cols=121 Identities=13% Similarity=0.146 Sum_probs=84.7
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC------CCCCccccccccC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG------TTFSLAPLRLLLD 184 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~------~~~d~v~~D~~l~ 184 (313)
..-++++|||+|..+..+++..++.....|.|+++.+++...+.++.++. ++++++.|. .+.|.+.++|-++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhccCCccEEEECCCcC
Confidence 56899999999999999999998878899999999999999999998887 588888886 3567778887777
Q ss_pred cccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397 185 PGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE 250 (313)
Q Consensus 185 ~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs 250 (313)
+.++.-.- ...+-..|.+...-..... +++.....++.| .|..+.-+|.
T Consensus 122 pt~~~~i~--~~~i~~a~aGG~~Gr~v~d----~ll~~v~~iLSp-----------~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 122 PTSDEEIG--DEGIASAWAGGKDGREVTD----RLLPQVPDILSP-----------RGVFYLVALR 170 (209)
T ss_pred cCCcccch--hHHHHHHHhcCcchHHHHH----HHHhhhhhhcCc-----------CceEEeeehh
Confidence 65543221 2223345765433222211 222333444433 7777777776
No 167
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.25 E-value=1.1e-05 Score=74.20 Aligned_cols=91 Identities=15% Similarity=0.060 Sum_probs=59.3
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcccccc
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRL 181 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~ 181 (313)
+...+..-.|.+|||+|||.|+.+..++.. +...|+|+|.+..-..+.+..-+-.|....+..+..-...++. ..
T Consensus 107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~---~~ 181 (315)
T PF08003_consen 107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN---LG 181 (315)
T ss_pred HHhhhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc---cC
Confidence 444454567999999999999999999876 3358999999998776654433334443223222112223332 34
Q ss_pred ccCccccccccccccc
Q 021397 182 LLDPGSCNSVLQEKDD 197 (313)
Q Consensus 182 ~l~~~s~sg~l~~~p~ 197 (313)
.||.+-|-|++.|..+
T Consensus 182 ~FDtVF~MGVLYHrr~ 197 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRS 197 (315)
T ss_pred CcCEEEEeeehhccCC
Confidence 5677789999876654
No 168
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.25 E-value=2.8e-06 Score=75.77 Aligned_cols=117 Identities=14% Similarity=0.148 Sum_probs=79.9
Q ss_pred CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccccc
Q 021397 112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSV 191 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg~ 191 (313)
-.+||+|||.|.+...+|+..++ ..++|+|+....+..+.+.+.+.++. |+.+++.||..+-..+++.. +.+++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~-~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~----sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPE-KNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDG----SLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCC-CCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCC----CeeEE
Confidence 47999999999999999999765 68999999999999999999999996 89999999976432222221 44555
Q ss_pred ccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397 192 LQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE 250 (313)
Q Consensus 192 l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs 250 (313)
.-.-||- |-...-.+.+. .|...+....+ ++++||.|...|=.
T Consensus 124 ~i~FPDP---WpKkRH~KRRl--~~~~fl~~~a~-----------~Lk~gG~l~~aTD~ 166 (227)
T COG0220 124 YINFPDP---WPKKRHHKRRL--TQPEFLKLYAR-----------KLKPGGVLHFATDN 166 (227)
T ss_pred EEECCCC---CCCcccccccc--CCHHHHHHHHH-----------HccCCCEEEEEecC
Confidence 5555664 43222211111 11111222223 34669999988854
No 169
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.25 E-value=3.9e-06 Score=78.55 Aligned_cols=73 Identities=19% Similarity=0.183 Sum_probs=58.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc-CCCCcEEEEe-cCC-----------CCCCc
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY-ALGDRCRLFV-ADG-----------TTFSL 176 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~-g~~~~v~~~~-~D~-----------~~~d~ 176 (313)
++.+|||+|||+|+....++.... ...++|+|+++..++.+++|++.+ ++.++|++.. .|. ..||+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl 192 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA 192 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence 467999999999999999888765 378999999999999999999999 7877888764 222 24666
Q ss_pred ccccccc
Q 021397 177 APLRLLL 183 (313)
Q Consensus 177 v~~D~~l 183 (313)
+..+|-|
T Consensus 193 ivcNPPf 199 (321)
T PRK11727 193 TLCNPPF 199 (321)
T ss_pred EEeCCCC
Confidence 6677443
No 170
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.21 E-value=4.9e-06 Score=79.61 Aligned_cols=69 Identities=12% Similarity=0.127 Sum_probs=60.6
Q ss_pred CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC--------CCCcccccc
Q 021397 112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT--------TFSLAPLRL 181 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~--------~~d~v~~D~ 181 (313)
-+|||+.||+|..++.++...++...|+++|+++..++.+++|++.+++. ++++++.|+. .||++.+||
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 48999999999999999987544468999999999999999999999885 6899999974 478888886
No 171
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=6e-06 Score=74.74 Aligned_cols=73 Identities=25% Similarity=0.323 Sum_probs=63.0
Q ss_pred HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcc
Q 021397 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA 177 (313)
Q Consensus 99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v 177 (313)
...++..+++++++.||++|+|.|..|..|++.. ..|+|+|+++.+++.+++.+. ..+|++++.+|+..+|+.
T Consensus 19 ~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 19 IDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcCcch
Confidence 4567888999999999999999999999999974 579999999999999998765 224899999999877653
No 172
>PRK10742 putative methyltransferase; Provisional
Probab=98.15 E-value=8.4e-06 Score=73.17 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=69.8
Q ss_pred HHHHHHhcCCCCCC--EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc------C--CCCcEEEEe
Q 021397 99 SGAAVSALNISAGD--HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY------A--LGDRCRLFV 168 (313)
Q Consensus 99 s~~~~~~l~~~~g~--~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~------g--~~~~v~~~~ 168 (313)
.+.++.++++++|. +|||+.||.|.-++.++.+ ++.|+++|.|+.....+++++++. + +..++++++
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 46788999999998 9999999999999999986 367999999999999999999985 3 224789999
Q ss_pred cCCC--------CCCcccccccc
Q 021397 169 ADGT--------TFSLAPLRLLL 183 (313)
Q Consensus 169 ~D~~--------~~d~v~~D~~l 183 (313)
+|+. .||+|.+||-|
T Consensus 152 ~da~~~L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 152 ASSLTALTDITPRPQVVYLDPMF 174 (250)
T ss_pred CcHHHHHhhCCCCCcEEEECCCC
Confidence 9872 57888889775
No 173
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.08 E-value=4.1e-05 Score=70.21 Aligned_cols=71 Identities=24% Similarity=0.278 Sum_probs=54.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC---CCcEEEEecCCC--------CCCccc
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL---GDRCRLFVADGT--------TFSLAP 178 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~~v~~~~~D~~--------~~d~v~ 178 (313)
.+.+||++|||.|+.+..+++..+ ..+|+++|+++.+++.+++++...+. ..+++++.+|+. .||.+.
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~-~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKS-VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCC-cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345999999999999888877542 36899999999999999998865431 236888889873 466666
Q ss_pred ccc
Q 021397 179 LRL 181 (313)
Q Consensus 179 ~D~ 181 (313)
+|+
T Consensus 151 ~D~ 153 (270)
T TIGR00417 151 VDS 153 (270)
T ss_pred EeC
Confidence 663
No 174
>PRK00811 spermidine synthase; Provisional
Probab=98.07 E-value=3.7e-05 Score=71.01 Aligned_cols=63 Identities=24% Similarity=0.363 Sum_probs=51.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC--C--CCcEEEEecCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA--L--GDRCRLFVADGTT 173 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g--~--~~~v~~~~~D~~~ 173 (313)
...+|||+|||.|+.+..+++.. +..+|+++|+++.+++.+++.+...+ . ..+++++.+|+..
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~ 142 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIK 142 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHH
Confidence 45799999999999999998753 34689999999999999999887643 1 3479999999853
No 175
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=3.4e-06 Score=69.16 Aligned_cols=63 Identities=17% Similarity=0.193 Sum_probs=52.2
Q ss_pred CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
+--+|..++|+|||.|..++..+ +.....|+|+|+++..++...+|++...+ ++.++++|...
T Consensus 45 gdiEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdild 107 (185)
T KOG3420|consen 45 GDIEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILD 107 (185)
T ss_pred ccccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccc
Confidence 33468999999999999995544 34446899999999999999999999988 57888888743
No 176
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.05 E-value=1.6e-05 Score=69.01 Aligned_cols=89 Identities=21% Similarity=0.158 Sum_probs=62.8
Q ss_pred hcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEE-EEecCCCCCCcccccccc
Q 021397 105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR-LFVADGTTFSLAPLRLLL 183 (313)
Q Consensus 105 ~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~-~~~~D~~~~d~v~~D~~l 183 (313)
++.......||++|||||..--..-. .+...|+++|.+++|-+.+.+.++..... ++. ++.+|+++++-. .|...
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~~-~~~~fvva~ge~l~~l-~d~s~ 146 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKPL-QVERFVVADGENLPQL-ADGSY 146 (252)
T ss_pred HhcccCccceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccCc-ceEEEEeechhcCccc-ccCCe
Confidence 34444445789999999987544432 14578999999999999999888777543 676 999999987732 35555
Q ss_pred Cccccccccccccc
Q 021397 184 DPGSCNSVLQEKDD 197 (313)
Q Consensus 184 ~~~s~sg~l~~~p~ 197 (313)
|.+.|+-++-...+
T Consensus 147 DtVV~TlvLCSve~ 160 (252)
T KOG4300|consen 147 DTVVCTLVLCSVED 160 (252)
T ss_pred eeEEEEEEEeccCC
Confidence 55566666555444
No 177
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.03 E-value=1.1e-05 Score=70.00 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=55.1
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC-CCccccccccCccc
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT-FSLAPLRLLLDPGS 187 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~-~d~v~~D~~l~~~s 187 (313)
+++++|||+|||+|..+..+++.. ...++++|+++.+++.++++ +++++.+|+.. ++. ..+..||.+.
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~-~~~~sfD~Vi 80 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEA-FPDKSFDYVI 80 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccc-cCCCCcCEEE
Confidence 477899999999999998888653 25689999999999887531 35677788754 211 1234566667
Q ss_pred cccccccccc
Q 021397 188 CNSVLQEKDD 197 (313)
Q Consensus 188 ~sg~l~~~p~ 197 (313)
|..++++.++
T Consensus 81 ~~~~l~~~~d 90 (194)
T TIGR02081 81 LSQTLQATRN 90 (194)
T ss_pred EhhHhHcCcC
Confidence 7777655443
No 178
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.03 E-value=1.3e-05 Score=74.83 Aligned_cols=94 Identities=19% Similarity=0.260 Sum_probs=65.4
Q ss_pred CeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHh------CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCc
Q 021397 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDII------GDSGSVTGVDVARHRLAACRTLLQKYALGDR 163 (313)
Q Consensus 90 G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~------~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~ 163 (313)
|.|+-=..-+.+++.++.++++.+|+|.|||+|++...+.+.+ .....++|+|+++..+..++-|+.-.|....
T Consensus 26 G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~ 105 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNS 105 (311)
T ss_dssp GGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCB
T ss_pred ceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccc
Confidence 5555555667788889999999999999999999998888754 2347899999999999999988876665322
Q ss_pred -EEEEecCCC---------CCCcccccccc
Q 021397 164 -CRLFVADGT---------TFSLAPLRLLL 183 (313)
Q Consensus 164 -v~~~~~D~~---------~~d~v~~D~~l 183 (313)
..+..+|.. .||.++.+|-|
T Consensus 106 ~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf 135 (311)
T PF02384_consen 106 NINIIQGDSLENDKFIKNQKFDVIIGNPPF 135 (311)
T ss_dssp GCEEEES-TTTSHSCTST--EEEEEEE--C
T ss_pred cccccccccccccccccccccccccCCCCc
Confidence 357788862 46666667554
No 179
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.02 E-value=8.4e-05 Score=65.51 Aligned_cols=66 Identities=26% Similarity=0.356 Sum_probs=53.7
Q ss_pred cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+.+++|.+||-+||++|..-.|+++..+..|.|+|||.|+...+.+-..+++.. ||..+.+|++..
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~---NIiPIl~DAr~P 134 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRP---NIIPILEDARHP 134 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHST---TEEEEES-TTSG
T ss_pred cCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCC---ceeeeeccCCCh
Confidence 346789999999999999999999999988999999999988888776666653 799999999753
No 180
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.00 E-value=2.9e-05 Score=68.03 Aligned_cols=74 Identities=16% Similarity=0.184 Sum_probs=57.7
Q ss_pred CeEEEecHHHHHHHHhcCCCC--CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEE
Q 021397 90 GKIYGIDAASGAAVSALNISA--GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167 (313)
Q Consensus 90 G~~~~Qd~ss~~~~~~l~~~~--g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~ 167 (313)
-..++|-+-+.-+.++|++.+ ..-|||+|||+|-.+..+.+- ....+++|||+.||+.+.+. .+. -.++
T Consensus 28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~~--e~e----gdli 98 (270)
T KOG1541|consen 28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVER--ELE----GDLI 98 (270)
T ss_pred eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHHh--hhh----cCee
Confidence 457889998888888888776 678999999999998877652 35789999999999999862 222 1356
Q ss_pred ecCCC
Q 021397 168 VADGT 172 (313)
Q Consensus 168 ~~D~~ 172 (313)
.+|+-
T Consensus 99 l~DMG 103 (270)
T KOG1541|consen 99 LCDMG 103 (270)
T ss_pred eeecC
Confidence 67763
No 181
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=97.99 E-value=2.8e-05 Score=70.15 Aligned_cols=79 Identities=15% Similarity=0.176 Sum_probs=66.5
Q ss_pred HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR 180 (313)
Q Consensus 101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D 180 (313)
-++...++++++.||++|-|||..|..|.+. ..+|+|+|+++.|+..+.++.+.....+..+++.+|....|.-.+|
T Consensus 49 ~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd 125 (315)
T KOG0820|consen 49 QIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFD 125 (315)
T ss_pred HHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccc
Confidence 3556677899999999999999999999986 3589999999999999999987776667899999999776654555
Q ss_pred cc
Q 021397 181 LL 182 (313)
Q Consensus 181 ~~ 182 (313)
-|
T Consensus 126 ~c 127 (315)
T KOG0820|consen 126 GC 127 (315)
T ss_pred ee
Confidence 44
No 182
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=97.97 E-value=2e-05 Score=77.93 Aligned_cols=133 Identities=21% Similarity=0.214 Sum_probs=77.8
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHH-------------HHHHHHHHHHcCCCCcEEEEecCCCC-
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHR-------------LAACRTLLQKYALGDRCRLFVADGTT- 173 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~-------------l~~~~~~~~~~g~~~~v~~~~~D~~~- 173 (313)
++++..|||+||+||+|....++.|+-++.|+|+|+-+-. -+.++..++..--.....++..|+..
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pikp~~~c~t~v~dIttd~cr~~l~k~l~t~~advVLhDgapn 121 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIKPIPNCDTLVEDITTDECRSKLRKILKTWKADVVLHDGAPN 121 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecccCCccchhhhhhhHHHHHHHHHHHHHhCCCcEEeecCCCc
Confidence 4678899999999999999999999988899999986533 12222222221111234567777642
Q ss_pred CCcc-ccc----cccCcc---ccccccccccc-ccccccccchh--HHHHHHHHHHHHHhhhhhccccCcceeEeecC
Q 021397 174 FSLA-PLR----LLLDPG---SCNSVLQEKDD-TFREWTSRIPW--KERKRAVKARENAASKAIVRSEHPELIFYGRR 240 (313)
Q Consensus 174 ~d~v-~~D----~~l~~~---s~sg~l~~~p~-~~~~w~~~~~~--~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~ 240 (313)
.... .-| .||..- ...+.+++... +-+.+....-. .....+++.++....+...|..|.|+|++|..
T Consensus 122 Vg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkvfrs~dy~~ll~v~~qLf~kv~~tkp~asr~~saeif~vc~~ 199 (780)
T KOG1098|consen 122 VGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKVFRSEDYNGLLRVFGQLFKKVEATKPAASRSESAEIFVVCLG 199 (780)
T ss_pred cchhHHHHHHHhhHHHHHHHHHHHHHHHhcCccccccccCCcchHHHHHHHHHHHHHHhcCChhhhhhccceeeeeec
Confidence 1100 000 111100 00111111111 11222222211 23458999999999999999999999999875
No 183
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.97 E-value=3.6e-05 Score=72.59 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=74.7
Q ss_pred HHHHHHHhcC----CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC---------CCCcE
Q 021397 98 ASGAAVSALN----ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA---------LGDRC 164 (313)
Q Consensus 98 ss~~~~~~l~----~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g---------~~~~v 164 (313)
-|.++...+. -.++.+|||||||-||-..=.... +-..++|+|++...++.++++.+... ..-..
T Consensus 46 Ks~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a 123 (331)
T PF03291_consen 46 KSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIA 123 (331)
T ss_dssp HHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEE
T ss_pred HHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchh
Confidence 3455555443 127899999999999987766553 45789999999999999999884321 11135
Q ss_pred EEEecCCCCCC--ccccc--cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecC
Q 021397 165 RLFVADGTTFS--LAPLR--LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRR 240 (313)
Q Consensus 165 ~~~~~D~~~~d--~v~~D--~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~ 240 (313)
.++.+|...-. ..+.+ ..||.+||--.++.. |... +.-..++.++...++|
T Consensus 124 ~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~------Fese--------~~ar~~l~Nvs~~Lk~----------- 178 (331)
T PF03291_consen 124 EFIAADCFSESLREKLPPRSRKFDVVSCQFALHYA------FESE--------EKARQFLKNVSSLLKP----------- 178 (331)
T ss_dssp EEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGG------GSSH--------HHHHHHHHHHHHTEEE-----------
T ss_pred heeccccccchhhhhccccCCCcceeehHHHHHHh------cCCH--------HHHHHHHHHHHHhcCC-----------
Confidence 67888875322 12223 366777887766542 1110 1112345667777765
Q ss_pred CcEEEEEcCC
Q 021397 241 SGIVGLTKEE 250 (313)
Q Consensus 241 gG~lvysTcs 250 (313)
||+.+-+|-+
T Consensus 179 GG~FIgT~~d 188 (331)
T PF03291_consen 179 GGYFIGTTPD 188 (331)
T ss_dssp EEEEEEEEE-
T ss_pred CCEEEEEecC
Confidence 9988777655
No 184
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.96 E-value=1.4e-05 Score=68.99 Aligned_cols=76 Identities=24% Similarity=0.216 Sum_probs=54.4
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccc
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS 187 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s 187 (313)
++||.+|||+|||.|..-.++.+. .+....|+|+++..+..+.++ | +.++++|+..-=.-+.|..||.+.
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~d~sFD~VI 80 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFPDQSFDYVI 80 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCCCCCccEEe
Confidence 468999999999999999888875 347899999999988766643 4 458999985311112245555556
Q ss_pred cccccc
Q 021397 188 CNSVLQ 193 (313)
Q Consensus 188 ~sg~l~ 193 (313)
.+.++.
T Consensus 81 lsqtLQ 86 (193)
T PF07021_consen 81 LSQTLQ 86 (193)
T ss_pred hHhHHH
Confidence 666553
No 185
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.89 E-value=9.7e-06 Score=70.88 Aligned_cols=83 Identities=13% Similarity=0.136 Sum_probs=63.8
Q ss_pred ccCCeEEEecHH-HHHHHHhc-CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcE
Q 021397 87 YKQGKIYGIDAA-SGAAVSAL-NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRC 164 (313)
Q Consensus 87 ~~~G~~~~Qd~s-s~~~~~~l-~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v 164 (313)
..+|++.+--+. +..++... ..-.-+.|+|..||-||-|++.|... ..|+++|+++-++..+++|++-+|+.++|
T Consensus 69 d~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~~rI 145 (263)
T KOG2730|consen 69 DREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVPDRI 145 (263)
T ss_pred cccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCCcee
Confidence 356777765443 22222221 11145689999999999999998763 57999999999999999999999999999
Q ss_pred EEEecCCC
Q 021397 165 RLFVADGT 172 (313)
Q Consensus 165 ~~~~~D~~ 172 (313)
+++++|..
T Consensus 146 tFI~GD~l 153 (263)
T KOG2730|consen 146 TFICGDFL 153 (263)
T ss_pred EEEechHH
Confidence 99999973
No 186
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.88 E-value=6.3e-05 Score=68.65 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=61.3
Q ss_pred HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCcc
Q 021397 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLA 177 (313)
Q Consensus 99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v 177 (313)
...++..+++.++..|||+|+|+|..|..+++.. ..|+++|+++..++.+++.+. ...+++++.+|+..++..
T Consensus 19 ~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 19 ADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTSCGG
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh---hcccceeeecchhccccH
Confidence 4557778889999999999999999999999874 689999999999999997654 234899999999887653
No 187
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.87 E-value=2.3e-05 Score=66.96 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=57.5
Q ss_pred CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccc
Q 021397 112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR 180 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D 180 (313)
+.+.|+|+|+|-.+...|+.. -+|+|++.++++.+.+.+|+.-.|.. |++++.+|+..+++...|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA~~y~fe~AD 98 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDARDYDFENAD 98 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEecccccccccccc
Confidence 789999999999999888873 48999999999999999999777874 899999999998875555
No 188
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.85 E-value=0.00022 Score=65.19 Aligned_cols=87 Identities=18% Similarity=0.132 Sum_probs=64.7
Q ss_pred CCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc-cccccccCcccc
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL-APLRLLLDPGSC 188 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~-v~~D~~l~~~s~ 188 (313)
.-+|||++||+|.--+-+.+..+. ...|.-.|.|+.-++..++.++..|+.+.+++.++|+...+- ..++|.-..+..
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~iV 215 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAIV 215 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEEE
Confidence 458999999999998877776654 358999999999999999999999998656999999865432 223443223355
Q ss_pred ccccccccc
Q 021397 189 NSVLQEKDD 197 (313)
Q Consensus 189 sg~l~~~p~ 197 (313)
||...-.||
T Consensus 216 sGL~ElF~D 224 (311)
T PF12147_consen 216 SGLYELFPD 224 (311)
T ss_pred ecchhhCCc
Confidence 665544443
No 189
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.85 E-value=4.2e-05 Score=71.01 Aligned_cols=68 Identities=24% Similarity=0.348 Sum_probs=59.9
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
+..+|.+++|+.++|+-+|-||.|..+++.+++ |+|+|+|.++.+++.++++++.++ +++.+++++..
T Consensus 12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~--~R~~~i~~nF~ 79 (305)
T TIGR00006 12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE--GRVVLIHDNFA 79 (305)
T ss_pred HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC--CcEEEEeCCHH
Confidence 456778899999999999999999999998875 999999999999999999988764 47899988764
No 190
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.84 E-value=9.2e-05 Score=73.81 Aligned_cols=62 Identities=16% Similarity=0.129 Sum_probs=54.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
.+..+||+|||.|.++..+|...++ ..++|+|++...+..+.+.+.+.++. |+.++..|+..
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~-~~~iGiE~~~~~~~~~~~~~~~~~l~-N~~~~~~~~~~ 408 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPD-ALFIGVEVYLNGVANVLKLAGEQNIT-NFLLFPNNLDL 408 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCC-CCEEEEEeeHHHHHHHHHHHHHcCCC-eEEEEcCCHHH
Confidence 3568999999999999999998765 68999999999999999999999996 79998888654
No 191
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=5.9e-05 Score=65.62 Aligned_cols=72 Identities=19% Similarity=0.334 Sum_probs=60.0
Q ss_pred HHHhcC--CCCCCEEEEECCCcChHHHHHHHHhCCCcEE-EEEcCCHHHHHHHHHHHHHcCC---------CCcEEEEec
Q 021397 102 AVSALN--ISAGDHVLDLCAAPGAKLCMILDIIGDSGSV-TGVDVARHRLAACRTLLQKYAL---------GDRCRLFVA 169 (313)
Q Consensus 102 ~~~~l~--~~~g~~VLDlcagpG~kt~~la~~~~~~~~V-~avD~s~~~l~~~~~~~~~~g~---------~~~v~~~~~ 169 (313)
+.+.|+ ++||.+.||+|+|+|+.|..++.+++..|.+ +++|..++.++..++|+.+.-- ..++.++.+
T Consensus 72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG 151 (237)
T KOG1661|consen 72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG 151 (237)
T ss_pred HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence 455676 8999999999999999999999888776664 9999999999999999987641 135778888
Q ss_pred CCCC
Q 021397 170 DGTT 173 (313)
Q Consensus 170 D~~~ 173 (313)
|++.
T Consensus 152 Dgr~ 155 (237)
T KOG1661|consen 152 DGRK 155 (237)
T ss_pred Cccc
Confidence 8864
No 192
>PRK03612 spermidine synthase; Provisional
Probab=97.81 E-value=9.2e-05 Score=74.11 Aligned_cols=64 Identities=28% Similarity=0.253 Sum_probs=49.7
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH--HHHc---CC-CCcEEEEecCCCC
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL--LQKY---AL-GDRCRLFVADGTT 173 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~--~~~~---g~-~~~v~~~~~D~~~ 173 (313)
+++.+|||+|+|.|..+..+++. +...+|+++|+++++++.++++ +... .+ +++++++.+|+..
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~ 365 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFN 365 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHH
Confidence 45679999999999999988874 3336999999999999999984 3222 12 2479999999853
No 193
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.81 E-value=0.0001 Score=72.19 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=53.1
Q ss_pred CCEEEEECCCcChHHHHHHHH---hCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397 111 GDHVLDLCAAPGAKLCMILDI---IGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~---~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
+..|+|+|||+|-.+...++. .+...+|+|+|.|+.+...+++.+++.+..++|+++.+|++.+..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC
Confidence 467999999999998665543 344569999999999999888888899998899999999998764
No 194
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.81 E-value=0.00031 Score=66.77 Aligned_cols=94 Identities=17% Similarity=0.162 Sum_probs=74.3
Q ss_pred cccccccCCeEEEecHH------HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCC--------------------
Q 021397 82 ATSMAYKQGKIYGIDAA------SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDS-------------------- 135 (313)
Q Consensus 82 ~~~~~~~~G~~~~Qd~s------s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~-------------------- 135 (313)
+....++.||-.-+-.+ +..+..+.+.+++..++|--||+|...+..|.+..+-
T Consensus 157 tG~sLhkRGyR~~~g~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~l 236 (381)
T COG0116 157 TGDSLHKRGYRVYDGPAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDL 236 (381)
T ss_pred CCcchhhccccccCCCCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHH
Confidence 34467788876666555 2334455677888999999999999999888765321
Q ss_pred -----------c-------EEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 136 -----------G-------SVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 136 -----------~-------~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
+ .++|+|+++.+++.|+.|+++.|+.+.|++.++|++.+.
T Consensus 237 w~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~ 294 (381)
T COG0116 237 WDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLK 294 (381)
T ss_pred HHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCC
Confidence 1 378999999999999999999999999999999998654
No 195
>PRK04148 hypothetical protein; Provisional
Probab=97.79 E-value=0.00012 Score=59.83 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=47.7
Q ss_pred HHHHhcCCCCCCEEEEECCCcCh-HHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397 101 AAVSALNISAGDHVLDLCAAPGA-KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 101 ~~~~~l~~~~g~~VLDlcagpG~-kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
.+...+....+.+|||+|||+|. .+..+++. +..|+|+|+++.+++.++++ + +.++.+|..+.+.
T Consensus 7 ~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~----~~~v~dDlf~p~~ 72 (134)
T PRK04148 7 FIAENYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G----LNAFVDDLFNPNL 72 (134)
T ss_pred HHHHhcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C----CeEEECcCCCCCH
Confidence 34444544467899999999997 66667653 36899999999988877654 2 5688888765543
No 196
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.77 E-value=2e-05 Score=70.37 Aligned_cols=40 Identities=33% Similarity=0.385 Sum_probs=34.6
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHH
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAA 150 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~ 150 (313)
.+|..|||+|||||++|..+++. + ..+|+|+|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-g-a~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-G-AKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-C-CCEEEEEeCCHHHHHH
Confidence 36789999999999999999986 3 4689999999988764
No 197
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=97.76 E-value=9.7e-05 Score=65.66 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=43.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~ 158 (313)
.+..+||+||-.|..|++||+..+. -.|+|+||++..++.|+++++..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhcccc
Confidence 3568999999999999999999875 57999999999999999998654
No 198
>PRK01581 speE spermidine synthase; Validated
Probab=97.75 E-value=0.00023 Score=67.49 Aligned_cols=69 Identities=23% Similarity=0.295 Sum_probs=51.0
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH--H---HHcCC-CCcEEEEecCCCC--------CCc
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL--L---QKYAL-GDRCRLFVADGTT--------FSL 176 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~--~---~~~g~-~~~v~~~~~D~~~--------~d~ 176 (313)
..+||++|+|.|+.+..+.+. ++..+|+++|+++.+++.+++. + .+..+ ..+++++.+|+.. ||+
T Consensus 151 PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 469999999999977777764 3346899999999999999962 1 12222 3589999999853 555
Q ss_pred cccc
Q 021397 177 APLR 180 (313)
Q Consensus 177 v~~D 180 (313)
+.+|
T Consensus 230 IIvD 233 (374)
T PRK01581 230 IIID 233 (374)
T ss_pred EEEc
Confidence 5555
No 199
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.72 E-value=0.00012 Score=59.88 Aligned_cols=58 Identities=16% Similarity=0.057 Sum_probs=49.9
Q ss_pred EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 113 ~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
.|||+||+.|..+..+++..+ .++|+++|.++.+.+.++++++.+++. ++.++.....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-EGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeee
Confidence 489999999999999998754 469999999999999999999999885 5888776553
No 200
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.66 E-value=5.8e-05 Score=66.75 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=51.2
Q ss_pred HHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCcEEEEecCCC
Q 021397 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL-GDRCRLFVADGT 172 (313)
Q Consensus 103 ~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~~v~~~~~D~~ 172 (313)
+....++.|++|||.|.|-|+.++..+++ +..+|+.++.++..++.+.-|==..++ ..+++++.+|+.
T Consensus 127 v~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~ 195 (287)
T COG2521 127 VELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAY 195 (287)
T ss_pred hheeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHH
Confidence 44567888999999999999999988875 234899999999999887644211111 125789999973
No 201
>PLN02366 spermidine synthase
Probab=97.65 E-value=0.0004 Score=64.91 Aligned_cols=63 Identities=16% Similarity=0.266 Sum_probs=51.6
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC--C-CCcEEEEecCCC
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA--L-GDRCRLFVADGT 172 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g--~-~~~v~~~~~D~~ 172 (313)
....+||++|+|.|+.+..+++. ++..+|+.+|+++.+++.+++.+...+ + +.+++++.+|+.
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~ 155 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGV 155 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHH
Confidence 34679999999999999999876 434689999999999999999886542 2 248999999974
No 202
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.62 E-value=0.0003 Score=63.41 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=49.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccc
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN 189 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~s 189 (313)
...++||+|||-|+.|..++.... +|+|.|.|+.|..+++ +.|. +++..| .+.- .+..||.++|-
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~----~kg~----~vl~~~--~w~~--~~~~fDvIscL 158 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLS----KKGF----TVLDID--DWQQ--TDFKFDVISCL 158 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHH----hCCC----eEEehh--hhhc--cCCceEEEeeh
Confidence 356899999999999999998764 6999999999876655 4454 233222 1211 12345566888
Q ss_pred cccccccc
Q 021397 190 SVLQEKDD 197 (313)
Q Consensus 190 g~l~~~p~ 197 (313)
.++.|..+
T Consensus 159 NvLDRc~~ 166 (265)
T PF05219_consen 159 NVLDRCDR 166 (265)
T ss_pred hhhhccCC
Confidence 77766543
No 203
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00056 Score=59.32 Aligned_cols=65 Identities=23% Similarity=0.342 Sum_probs=55.8
Q ss_pred cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+.+++|++||=+||++|....|++...+ .|.|+|++.|+.....+-..+++. .|+-.+.+|++..
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P 136 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKP 136 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCc
Confidence 3467899999999999999999999998 699999999999888777776653 3788999999753
No 204
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.59 E-value=0.00031 Score=72.76 Aligned_cols=92 Identities=15% Similarity=0.133 Sum_probs=66.9
Q ss_pred cccccccCCeEEEecHHH------HHHHHhcCC-CCCCEEEEECCCcChHHHHHHHHhC---------------------
Q 021397 82 ATSMAYKQGKIYGIDAAS------GAAVSALNI-SAGDHVLDLCAAPGAKLCMILDIIG--------------------- 133 (313)
Q Consensus 82 ~~~~~~~~G~~~~Qd~ss------~~~~~~l~~-~~g~~VLDlcagpG~kt~~la~~~~--------------------- 133 (313)
+..+.++.|+-..+.++. ..+..+.+. +++..++|-+||+|...+..|....
T Consensus 155 sg~~L~rRgyr~~~~~Apl~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~ 234 (702)
T PRK11783 155 SGESLHQRGYRQATGEAPLKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDE 234 (702)
T ss_pred CCCchhhccCccCCCCCCCcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCH
Confidence 344556666644333332 222233344 5688999999999999988876421
Q ss_pred --------------------CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 134 --------------------DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 134 --------------------~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
....|+|+|+++.+++.+++|++.+|+.+.+++.++|+..
T Consensus 235 ~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~ 294 (702)
T PRK11783 235 ALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVAD 294 (702)
T ss_pred HHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhh
Confidence 1236999999999999999999999998779999999854
No 205
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.55 E-value=0.001 Score=59.70 Aligned_cols=114 Identities=13% Similarity=0.133 Sum_probs=73.8
Q ss_pred HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC-CCCcccc
Q 021397 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT-TFSLAPL 179 (313)
Q Consensus 101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~-~~d~v~~ 179 (313)
.+....+..+..+|+|+|.|.|..+..+++..++ .+++..|. +..++.+++ .++|+++.+|.. .++. .
T Consensus 91 ~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P~--~ 159 (241)
T PF00891_consen 91 ILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPN-LRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLPV--A 159 (241)
T ss_dssp HHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTT-SEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCSS--E
T ss_pred hhhccccccCccEEEeccCcchHHHHHHHHHCCC-Ccceeecc-Hhhhhcccc-------ccccccccccHHhhhcc--c
Confidence 3445667777789999999999999999999875 79999998 778887776 358999999985 2222 3
Q ss_pred ccccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCC--cEEEEEcCCCCCcccc
Q 021397 180 RLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRS--GIVGLTKEEIYQSVCN 257 (313)
Q Consensus 180 D~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~g--G~lvysTcs~~~p~En 257 (313)
| ....+.+++ .|..+. -..+|+++.++++| | |+|+....- +.+...
T Consensus 160 D----~~~l~~vLh-------~~~d~~---------~~~iL~~~~~al~p-----------g~~g~llI~e~~-~~~~~~ 207 (241)
T PF00891_consen 160 D----VYLLRHVLH-------DWSDED---------CVKILRNAAAALKP-----------GKDGRLLIIEMV-LPDDRT 207 (241)
T ss_dssp S----EEEEESSGG-------GS-HHH---------HHHHHHHHHHHSEE-----------CTTEEEEEEEEE-ECSSSS
T ss_pred c----ceeeehhhh-------hcchHH---------HHHHHHHHHHHhCC-----------CCCCeEEEEeec-cCCCCC
Confidence 3 223344443 443311 23345566666655 7 888777665 444333
No 206
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.55 E-value=0.00031 Score=57.98 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=50.8
Q ss_pred CCCCEEEEECCCcChHHHHHHHHh---CCCcEEEEEcCCHHHHHHHHHHHHHcC--CCCcEEEEecCC
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDII---GDSGSVTGVDVARHRLAACRTLLQKYA--LGDRCRLFVADG 171 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~---~~~~~V~avD~s~~~l~~~~~~~~~~g--~~~~v~~~~~D~ 171 (313)
.+...|+|+|||-|..+..++..+ .....|+++|.++..++.+++..++.+ ...++.+..++.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 91 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDI 91 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccch
Confidence 677899999999999999999944 234689999999999999999998887 433455555544
No 207
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.53 E-value=0.00051 Score=64.24 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=54.5
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
-.+..|||+|||+|-.++..|+. | ..+|+|+|.|.-. +.+++.++.+++.+.|+++.+.+..+
T Consensus 59 f~dK~VlDVGcGtGILS~F~akA-G-A~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKA-G-ARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI 121 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHh-C-cceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE
Confidence 36889999999999999988876 3 4689999988766 89999999999988899999988765
No 208
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.53 E-value=0.00086 Score=59.83 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=49.9
Q ss_pred CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH------------HHcCCCCcEEEEecCCCCC
Q 021397 107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL------------QKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~------------~~~g~~~~v~~~~~D~~~~ 174 (313)
.+.++.+||+.|||.|.-+.+||+. +-.|+|+|+|+..++.+.+.. .++. ..++++.++|...+
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~-~~~i~~~~gD~f~l 115 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK-GDDIEIYVADIFNL 115 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceec-cCceEEEEccCcCC
Confidence 3446789999999999999999985 357999999999999876521 0111 13689999998766
Q ss_pred C
Q 021397 175 S 175 (313)
Q Consensus 175 d 175 (313)
+
T Consensus 116 ~ 116 (226)
T PRK13256 116 P 116 (226)
T ss_pred C
Confidence 4
No 209
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=97.51 E-value=0.00043 Score=63.97 Aligned_cols=93 Identities=22% Similarity=0.196 Sum_probs=65.6
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CC----cEEEEecCCC
Q 021397 98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL-GD----RCRLFVADGT 172 (313)
Q Consensus 98 ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~----~v~~~~~D~~ 172 (313)
-|+++-..+ ++++.++|||||-||-.+-.-.. +-+.++|+||.+--+++++++.+.+.- .. .+.++.+|-.
T Consensus 107 Ks~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~ 182 (389)
T KOG1975|consen 107 KSVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF 182 (389)
T ss_pred HHHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence 467666655 67899999999999997766543 246899999999999999877664421 11 3678899875
Q ss_pred CC---Cccccc-cccCcccccccccc
Q 021397 173 TF---SLAPLR-LLLDPGSCNSVLQE 194 (313)
Q Consensus 173 ~~---d~v~~D-~~l~~~s~sg~l~~ 194 (313)
.- +.+..+ |-||.+||.-.++-
T Consensus 183 ~~~l~d~~e~~dp~fDivScQF~~HY 208 (389)
T KOG1975|consen 183 KERLMDLLEFKDPRFDIVSCQFAFHY 208 (389)
T ss_pred hhHHHHhccCCCCCcceeeeeeeEee
Confidence 32 222234 66888899877653
No 210
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.48 E-value=0.00029 Score=62.66 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=39.0
Q ss_pred HHHHhcCCCCCC-EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH
Q 021397 101 AAVSALNISAGD-HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL 154 (313)
Q Consensus 101 ~~~~~l~~~~g~-~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~ 154 (313)
+.-.+....++. .++|+|||+|--+..+|+.. -+|+|+|+|+.||+.+++.
T Consensus 23 w~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~ 74 (261)
T KOG3010|consen 23 WFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKH 74 (261)
T ss_pred HHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcC
Confidence 444445555665 89999999996667777764 3699999999999987754
No 211
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.48 E-value=0.00022 Score=66.85 Aligned_cols=56 Identities=29% Similarity=0.332 Sum_probs=41.8
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+.+|+++||+||+|||+|..++++ +..|+|||..+ +...+.. ..+|+....|+..+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-----l~~~L~~---~~~V~h~~~d~fr~ 264 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-----MAQSLMD---TGQVEHLRADGFKF 264 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-----cCHhhhC---CCCEEEEeccCccc
Confidence 368999999999999999999986 35999999554 2222222 23788888887554
No 212
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.44 E-value=0.00016 Score=69.29 Aligned_cols=72 Identities=22% Similarity=0.228 Sum_probs=55.1
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-cEEEEecCCC--------CCCcccccc
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD-RCRLFVADGT--------TFSLAPLRL 181 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-~v~~~~~D~~--------~~d~v~~D~ 181 (313)
+-+|||.=||+|--++-.+..+++...|+++|+|++.++.+++|++.+++.+ ++++.+.|+. .||+|-+||
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlDP 129 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLDP 129 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeCC
Confidence 4589999999999999999887666799999999999999999999999986 6899999984 366666664
Q ss_pred c
Q 021397 182 L 182 (313)
Q Consensus 182 ~ 182 (313)
-
T Consensus 130 f 130 (377)
T PF02005_consen 130 F 130 (377)
T ss_dssp S
T ss_pred C
Confidence 3
No 213
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.43 E-value=7.2e-05 Score=65.99 Aligned_cols=44 Identities=25% Similarity=0.337 Sum_probs=37.2
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL 154 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~ 154 (313)
..+-.++||+|||+|-.+..|-.+. ..++++|+|.+|++++.++
T Consensus 123 ~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 123 LGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK 166 (287)
T ss_pred CCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc
Confidence 3345799999999999999888775 4799999999999988754
No 214
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.41 E-value=0.0011 Score=55.82 Aligned_cols=70 Identities=17% Similarity=0.172 Sum_probs=57.0
Q ss_pred HHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 100 ~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
+..+...++..|..||++|.|+|-.|-.+.++.-....++++|.|++-...+.+.. . .+.++++|+...+
T Consensus 38 ~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---p---~~~ii~gda~~l~ 107 (194)
T COG3963 38 RKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---P---GVNIINGDAFDLR 107 (194)
T ss_pred HHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---C---CccccccchhhHH
Confidence 34445667888999999999999999999988766678999999999998887543 2 3668999987655
No 215
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.30 E-value=0.0011 Score=60.95 Aligned_cols=68 Identities=21% Similarity=0.289 Sum_probs=62.0
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~ 171 (313)
++..|.++|+...+|.--|-||.|..+.+..+..++++|+|.++.+++.+++.+..++ +++.++++..
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F 82 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNF 82 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcH
Confidence 5678899999999999999999999999999888899999999999999999998877 3788888765
No 216
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=97.28 E-value=0.00092 Score=59.46 Aligned_cols=65 Identities=25% Similarity=0.331 Sum_probs=52.8
Q ss_pred CCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 107 ~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.++||.+||=|||++|..-.|++...++.+.|+|+|.|...=..+-..+++. .||..+..|++..
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArhP 217 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARHP 217 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCCc
Confidence 4789999999999999999999999999999999999986544444333332 3788899999754
No 217
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.27 E-value=0.00088 Score=59.17 Aligned_cols=35 Identities=34% Similarity=0.551 Sum_probs=28.5
Q ss_pred CEEEEECCCcChHHHHHHHHhCC----Cc----EEEEEcCCHH
Q 021397 112 DHVLDLCAAPGAKLCMILDIIGD----SG----SVTGVDVARH 146 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~~----~~----~V~avD~s~~ 146 (313)
.+|.|+||+||+|+..+++.+.. .+ .|+|||+.+.
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M 85 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM 85 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC
Confidence 57999999999999999998743 22 3999998653
No 218
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.19 E-value=0.0015 Score=58.00 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=48.9
Q ss_pred cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH-c-----C-----CCCcEEEEecCCCCC
Q 021397 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK-Y-----A-----LGDRCRLFVADGTTF 174 (313)
Q Consensus 106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~-~-----g-----~~~~v~~~~~D~~~~ 174 (313)
+..+++.+||+.|||.|.-...+|+. +-.|+|+|+|+..++.+.+.... . + -.++|+++++|...+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 45678889999999999999999985 35899999999999988432111 0 0 013578999998765
Q ss_pred C
Q 021397 175 S 175 (313)
Q Consensus 175 d 175 (313)
+
T Consensus 110 ~ 110 (218)
T PF05724_consen 110 P 110 (218)
T ss_dssp G
T ss_pred C
Confidence 4
No 219
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.16 E-value=0.0014 Score=57.57 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=49.9
Q ss_pred EEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 114 VLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 114 VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
|.|+||--|.....|.+.- ...+++|+|+++.-++.++++++++|+.++|++..+|+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~-~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~ 59 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG-KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLE 59 (205)
T ss_dssp EEEET-STTHHHHHHHHTT-SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGG
T ss_pred CceeccchhHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccc
Confidence 6899999999999999852 2347999999999999999999999999899999999743
No 220
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.08 E-value=0.0005 Score=63.93 Aligned_cols=68 Identities=24% Similarity=0.353 Sum_probs=52.2
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
+...|.++++..++|+--|.||.|..+.+..++ ++|+|+|.++.+++.++++++.+ .+++.+++++..
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~ 79 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GG
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHH
Confidence 556778999999999999999999999999887 99999999999999999887655 347888888764
No 221
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.05 E-value=0.00073 Score=52.55 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=16.7
Q ss_pred EEECCCcChHHHHHHHHhCCCc--EEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 115 LDLCAAPGAKLCMILDIIGDSG--SVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 115 LDlcagpG~kt~~la~~~~~~~--~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
|++|++.|..|..+++.+...+ +++++|..+. .+..++.+++.++.++++++.+|..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~ 59 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSP 59 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-TH
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcH
Confidence 6899999999999998876544 7999999997 4556666666777778999999974
No 222
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.03 E-value=0.0014 Score=55.99 Aligned_cols=62 Identities=21% Similarity=0.188 Sum_probs=42.1
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC--CCCcEEEEecCC
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA--LGDRCRLFVADG 171 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g--~~~~v~~~~~D~ 171 (313)
..++.+||++|||.|--++.++... ....|++.|.++ .++.++.|++.++ ...++.+...|-
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~W 106 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDW 106 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--T
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEe
Confidence 3468899999999999999888874 346899999999 9999999999876 445677776654
No 223
>PLN02823 spermine synthase
Probab=97.02 E-value=0.0064 Score=57.50 Aligned_cols=69 Identities=17% Similarity=0.203 Sum_probs=54.3
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC---CCCcEEEEecCCC--------CCCcccc
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA---LGDRCRLFVADGT--------TFSLAPL 179 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g---~~~~v~~~~~D~~--------~~d~v~~ 179 (313)
..+||-+|+|.|+.+..+.+..+ ..+|+++|+++..++.+++.+...+ -+.+++++.+|+. .||++++
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 46899999999999988877533 3689999999999999998875432 1358999999984 3666666
Q ss_pred c
Q 021397 180 R 180 (313)
Q Consensus 180 D 180 (313)
|
T Consensus 183 D 183 (336)
T PLN02823 183 D 183 (336)
T ss_pred c
Confidence 6
No 224
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.01 E-value=0.0029 Score=54.73 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=51.9
Q ss_pred EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 113 ~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
+++|+|+|.|-=++.+|=..+ ..+++-+|.+.+++.-++.-...+|+. |++++++.++.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~ 109 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-DLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEE 109 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-TSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHH
T ss_pred eEEecCCCCCChhHHHHHhCC-CCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecc
Confidence 899999999999999988775 478999999999999999999999997 79999999877
No 225
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.00 E-value=0.00044 Score=67.19 Aligned_cols=75 Identities=13% Similarity=0.120 Sum_probs=65.2
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC-----------CCCc
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT-----------TFSL 176 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~-----------~~d~ 176 (313)
-.++-+|||.-||+|--++..|..+++-+.|+|+|.++..++..++|++.++..+.++....|+. .||+
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDv 186 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDV 186 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccce
Confidence 34567999999999999999999999888999999999999999999999988877888888873 5777
Q ss_pred cccccc
Q 021397 177 APLRLL 182 (313)
Q Consensus 177 v~~D~~ 182 (313)
|-+||-
T Consensus 187 IDLDPy 192 (525)
T KOG1253|consen 187 IDLDPY 192 (525)
T ss_pred EecCCC
Confidence 777754
No 226
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.97 E-value=0.0023 Score=53.95 Aligned_cols=56 Identities=16% Similarity=0.071 Sum_probs=39.3
Q ss_pred EEEcCCHHHHHHHHHHHHHcC--CCCcEEEEecCCCCCCccccccccCcccccccccccc
Q 021397 139 TGVDVARHRLAACRTLLQKYA--LGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKD 196 (313)
Q Consensus 139 ~avD~s~~~l~~~~~~~~~~g--~~~~v~~~~~D~~~~d~v~~D~~l~~~s~sg~l~~~p 196 (313)
+|+|+|+.|++.++++.+..+ ...+++++++|+..++. .|..||.+.+..+++.-+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~--~~~~fD~v~~~~~l~~~~ 58 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF--DDCEFDAVTMGYGLRNVV 58 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC--CCCCeeEEEecchhhcCC
Confidence 489999999999987765332 22379999999988764 234566667666665433
No 227
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.96 E-value=0.0023 Score=64.12 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=46.2
Q ss_pred CCEEEEECCCcChHHHHHHHHhCC-------CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGD-------SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD 170 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~-------~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D 170 (313)
+.+|||.|||+|++...+++.+.. ...++|+|+++..+..++.++..++.. .+.+.+.|
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~-~~~i~~~d 97 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALL-EINVINFN 97 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCC-Cceeeecc
Confidence 458999999999999999887631 246899999999999999999877621 24444444
No 228
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.95 E-value=0.003 Score=55.82 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=56.4
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
+.+++|+|+|+|-=++.+|=.. +...|+-+|...+|+.-++...+.+|++ |++++++.++.+..
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~ 131 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQ 131 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhccc
Confidence 6899999999999999998444 4567999999999999999999999996 79999999887653
No 229
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.81 E-value=0.0054 Score=54.83 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=54.2
Q ss_pred HHHHHhcCCCCCC--EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC--C------CcEEEEec
Q 021397 100 GAAVSALNISAGD--HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL--G------DRCRLFVA 169 (313)
Q Consensus 100 ~~~~~~l~~~~g~--~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~--~------~~v~~~~~ 169 (313)
+.++.++++++|. +|||+-+|-|.-++.+|.. | ++|+++|.|+-....++.-++++.- . .+++++++
T Consensus 63 ~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 63 DPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp SHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred cHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 5677788888875 8999999999999999964 4 6899999999988888877665521 1 37899999
Q ss_pred CCC--------CCCccccccccC
Q 021397 170 DGT--------TFSLAPLRLLLD 184 (313)
Q Consensus 170 D~~--------~~d~v~~D~~l~ 184 (313)
|+. .+|.|.+||-|-
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S--
T ss_pred CHHHHHhhcCCCCCEEEECCCCC
Confidence 974 467778887754
No 230
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=96.76 E-value=0.0036 Score=55.81 Aligned_cols=60 Identities=17% Similarity=0.155 Sum_probs=47.9
Q ss_pred EEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 113 HVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 113 ~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+||++|||-|.....+.+..++ .-.|+|+|.|+.+++..+++..... .++...+.|.+.-
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dlt~~ 134 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDLTSP 134 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceeccch
Confidence 8999999999999999887554 2589999999999999998865444 2566677776543
No 231
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.73 E-value=0.0027 Score=59.87 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=57.5
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC--------CCCCcccccc
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG--------TTFSLAPLRL 181 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~--------~~~d~v~~D~ 181 (313)
..+|+|.-+|+|--++-+|...+.. +|+.+|+|++.++.+++|++.+... +..+++.|+ ..||+|-+||
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~-~~~v~n~DAN~lm~~~~~~fd~IDiDP 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGE-DAEVINKDANALLHELHRAFDVIDIDP 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcc-cceeecchHHHHHHhcCCCccEEecCC
Confidence 6799999999999999999887754 8999999999999999999998443 577777887 3467666664
No 232
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.70 E-value=0.005 Score=57.36 Aligned_cols=62 Identities=19% Similarity=0.211 Sum_probs=52.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|..|||+|||+|-.+...++. +..+|+|++.| +|.+.+++.++.+.+.++|.++.+..+.+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdi 238 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDI 238 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccc
Confidence 4678999999999999988875 34689999987 57788999988888888999998887654
No 233
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.64 E-value=0.0031 Score=54.56 Aligned_cols=59 Identities=22% Similarity=0.148 Sum_probs=50.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
.|.+|||+|+|+|--++..+.. +...|++.|+.+.....++-|++.+|. .|.++..|..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~ 137 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLI 137 (218)
T ss_pred ccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccc--eeEEeecccc
Confidence 4899999999999998877764 346899999999999999999999997 5888888764
No 234
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.48 E-value=0.031 Score=48.95 Aligned_cols=62 Identities=13% Similarity=0.158 Sum_probs=50.2
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
+.+||++|||+|-.+.++|+.++. -.-.-.|.++..+..++..++..++.+-...+.-|+..
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~lP~-l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~ 87 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQALPH-LTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA 87 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHCCC-CEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC
Confidence 346999999999999999999975 67889999999999999988888876322345556554
No 235
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.47 E-value=0.0078 Score=53.03 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=55.8
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~ 171 (313)
+.+.++.|+||--|+....+.+... ...++|.|+++.-++.+.+++++.++.+++++..+|+
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg 76 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG 76 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC
Confidence 4567799999999999999988643 4689999999999999999999999999999999998
No 236
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.44 E-value=0.0086 Score=52.12 Aligned_cols=61 Identities=10% Similarity=0.116 Sum_probs=49.1
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC-------CCCcEEEEecCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA-------LGDRCRLFVADGTT 173 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g-------~~~~v~~~~~D~~~ 173 (313)
.-.+.|+|||-||....++.+.++ ..|+|.+|..+..+..+++++.++ .. |+.+...++..
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPd-tLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~-ni~vlr~namk 128 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPD-TLILGMEIRDKVSDYVKERIQALRRTSAEGQYP-NISVLRTNAMK 128 (249)
T ss_pred cceEEeeccCccchhhhccccCcc-ceeeeehhhHHHHHHHHHHHHHHhccccccccc-cceeeeccchh
Confidence 346899999999999999998875 689999999988888888877665 33 56777776644
No 237
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.41 E-value=0.012 Score=55.16 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=48.8
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCC---CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE--EecCCC
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGD---SGSVTGVDVARHRLAACRTLLQKYALGDRCRL--FVADGT 172 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~---~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~--~~~D~~ 172 (313)
.++..++|+|||.|.||..+.+.+.. ...-+++|+|...|+.+.+++.....+ .+++ +++|..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p-~l~v~~l~gdy~ 142 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFS-HVRCAGLLGTYD 142 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCC-CeEEEEEEecHH
Confidence 46779999999999999998887742 246899999999999999998733332 3444 777753
No 238
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.40 E-value=0.011 Score=52.02 Aligned_cols=61 Identities=23% Similarity=0.224 Sum_probs=44.8
Q ss_pred cHHHHHHHHhcCCCCC---CEEEEECCCcChHHHHHHHHhCCC-cEEEEEcCCHHHHHHHHHHHH
Q 021397 96 DAASGAAVSALNISAG---DHVLDLCAAPGAKLCMILDIIGDS-GSVTGVDVARHRLAACRTLLQ 156 (313)
Q Consensus 96 d~ss~~~~~~l~~~~g---~~VLDlcagpG~kt~~la~~~~~~-~~V~avD~s~~~l~~~~~~~~ 156 (313)
..+|.+....+...++ -+++|-|||.|+..+.+.-+-++. ..|+|.|+++++++.+++|+.
T Consensus 34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 4567666666655443 489999999999988877654332 369999999999999999885
No 239
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.15 E-value=0.013 Score=58.21 Aligned_cols=81 Identities=14% Similarity=0.162 Sum_probs=67.2
Q ss_pred CeEEEecHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCC---CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEE
Q 021397 90 GKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD---SGSVTGVDVARHRLAACRTLLQKYALGDRCRL 166 (313)
Q Consensus 90 G~~~~Qd~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~---~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~ 166 (313)
|.||-=...+.+.+.++.|++..+|+|-|||+|+.-...++.++. ...++|.|+++.....++-|+--+|+..++.+
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 777766677888999999999999999999999999998888853 36799999999999999999988888533445
Q ss_pred EecC
Q 021397 167 FVAD 170 (313)
Q Consensus 167 ~~~D 170 (313)
..+|
T Consensus 246 ~~~d 249 (489)
T COG0286 246 RHGD 249 (489)
T ss_pred cccc
Confidence 5544
No 240
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.14 E-value=0.031 Score=49.15 Aligned_cols=71 Identities=18% Similarity=0.250 Sum_probs=46.6
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHH-------HcCC-CCcEEEEecCCCC
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ-------KYAL-GDRCRLFVADGTT 173 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~-------~~g~-~~~v~~~~~D~~~ 173 (313)
+...+++.+++..+|+|||.|...+++|-..+ -.+.+|+|+.+...+.++...+ .+|. ..++++..+|...
T Consensus 34 il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~ 112 (205)
T PF08123_consen 34 ILDELNLTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD 112 (205)
T ss_dssp HHHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred HHHHhCCCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence 44667899999999999999999988887664 3569999999998777664433 3343 2367788888654
No 241
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=96.09 E-value=0.0028 Score=60.69 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=56.2
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCc-EEEEecCCCCC
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR-CRLFVADGTTF 174 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~-v~~~~~D~~~~ 174 (313)
.++|+.|-|+|||-|-+++.++.. ...|+|+|.++++++.++.|++.+.+... |+++..||..|
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 468999999999999999998875 38999999999999999999988877655 89999998654
No 242
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=96.04 E-value=0.013 Score=53.91 Aligned_cols=49 Identities=24% Similarity=0.279 Sum_probs=41.0
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g 159 (313)
..+|||+|||||.-+..+.+..+....++++|.|+.|++.++..++...
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~ 82 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGP 82 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhccc
Confidence 3689999999998888777777755689999999999999888776543
No 243
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.98 E-value=0.019 Score=51.88 Aligned_cols=76 Identities=17% Similarity=0.262 Sum_probs=55.4
Q ss_pred HHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC---CCcEEEEecCCC-------
Q 021397 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL---GDRCRLFVADGT------- 172 (313)
Q Consensus 103 ~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---~~~v~~~~~D~~------- 172 (313)
+.++.+ ...+||=+|-|.|+.+..+.+.- ...+|+++|+++..++.+++-+..... +.+++++.+|+.
T Consensus 70 ~~~~~~-~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~ 147 (246)
T PF01564_consen 70 PLLLHP-NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ 147 (246)
T ss_dssp HHHHSS-ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSS
T ss_pred HhhcCC-CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhcc
Confidence 334444 46799999999999999887653 236899999999999999987765432 258999999983
Q ss_pred --CCCccccc
Q 021397 173 --TFSLAPLR 180 (313)
Q Consensus 173 --~~d~v~~D 180 (313)
.||.+..|
T Consensus 148 ~~~yDvIi~D 157 (246)
T PF01564_consen 148 EEKYDVIIVD 157 (246)
T ss_dssp ST-EEEEEEE
T ss_pred CCcccEEEEe
Confidence 46666666
No 244
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.95 E-value=0.056 Score=49.91 Aligned_cols=80 Identities=16% Similarity=0.229 Sum_probs=62.7
Q ss_pred HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC--C-CCcEEEEecCCC---
Q 021397 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA--L-GDRCRLFVADGT--- 172 (313)
Q Consensus 99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g--~-~~~v~~~~~D~~--- 172 (313)
...++....+.| .+||=+|-|.|+.+..+.+... -.+++.|||++..++.+++-+.... . +.+++++..|+.
T Consensus 66 l~h~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v 143 (282)
T COG0421 66 LAHVPLLAHPNP-KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFL 143 (282)
T ss_pred HHhchhhhCCCC-CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHH
Confidence 334555566677 6999999999999999998764 4689999999999999998876543 2 258999999983
Q ss_pred -----CCCccccc
Q 021397 173 -----TFSLAPLR 180 (313)
Q Consensus 173 -----~~d~v~~D 180 (313)
.||.+..|
T Consensus 144 ~~~~~~fDvIi~D 156 (282)
T COG0421 144 RDCEEKFDVIIVD 156 (282)
T ss_pred HhCCCcCCEEEEc
Confidence 36666666
No 245
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.89 E-value=0.016 Score=55.79 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=49.4
Q ss_pred EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecC
Q 021397 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD 170 (313)
Q Consensus 113 ~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D 170 (313)
.|||+|+|+|-.+.+.+.... -.|+|++.-..|.+.+++...+.|..++|.++..-
T Consensus 69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkr 124 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKR 124 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeeccc
Confidence 589999999999988887653 47999999999999999999999999899887543
No 246
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=95.52 E-value=0.0076 Score=55.35 Aligned_cols=63 Identities=24% Similarity=0.297 Sum_probs=51.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
.|+.|.||-||-|++|+...-..+ ...|+|+|.++..++.++++++.+++.++..++.+|-+.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~ag-Ak~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~ 256 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAG-AKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRN 256 (351)
T ss_pred ccchhhhhhcccceEEeehhhccC-ccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccc
Confidence 368999999999999993333333 468999999999999999999999887777788888654
No 247
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=95.46 E-value=0.056 Score=50.18 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=43.3
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc-CCCCcEEEEecC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY-ALGDRCRLFVAD 170 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~-g~~~~v~~~~~D 170 (313)
.-++||+|+|.-..-..|+.... +-.++|.|+++..++.|++|++++ ++.++|+++...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~ 162 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQK 162 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcC
Confidence 45899999999887655555543 479999999999999999999999 898889987553
No 248
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.43 E-value=0.14 Score=48.50 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=53.3
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH--HHcC---C-CCcEEEEecCCC--------CC
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL--QKYA---L-GDRCRLFVADGT--------TF 174 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~--~~~g---~-~~~v~~~~~D~~--------~~ 174 (313)
+...+||=+|-|-|--...+.+. +.-++|+-+|++|+|++.++++. +..+ + +.+++++..|+. .|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 44578999999998887777765 44579999999999999999543 3222 1 247899999984 46
Q ss_pred Cccccc
Q 021397 175 SLAPLR 180 (313)
Q Consensus 175 d~v~~D 180 (313)
|.+.+|
T Consensus 367 D~vIVD 372 (508)
T COG4262 367 DVVIVD 372 (508)
T ss_pred cEEEEe
Confidence 777666
No 249
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=95.33 E-value=0.012 Score=54.98 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=61.8
Q ss_pred HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHH-------HHHHHHHHcCCCC-cEEEEecC
Q 021397 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA-------ACRTLLQKYALGD-RCRLFVAD 170 (313)
Q Consensus 99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~-------~~~~~~~~~g~~~-~v~~~~~D 170 (313)
|-+.+....++||+-|+|-..|+|+.-...|.. ++.|+|.||+-.++. ..+.|++++|... -+.++.+|
T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D 273 (421)
T KOG2671|consen 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTAD 273 (421)
T ss_pred HHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeec
Confidence 444555667899999999999999998877765 379999999988877 4678999999542 25677888
Q ss_pred CCC--------CCccccccc
Q 021397 171 GTT--------FSLAPLRLL 182 (313)
Q Consensus 171 ~~~--------~d~v~~D~~ 182 (313)
.++ ||.+..||-
T Consensus 274 ~sn~~~rsn~~fDaIvcDPP 293 (421)
T KOG2671|consen 274 FSNPPLRSNLKFDAIVCDPP 293 (421)
T ss_pred ccCcchhhcceeeEEEeCCC
Confidence 754 556666644
No 250
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.32 E-value=0.34 Score=37.68 Aligned_cols=58 Identities=29% Similarity=0.395 Sum_probs=40.0
Q ss_pred EEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 114 VLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 114 VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
++|+|||+|..+ .++........++++|+++.++...+......+.. .+.+...|...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEecccc
Confidence 999999999988 55554432237999999999999855444332221 15777777654
No 251
>PHA01634 hypothetical protein
Probab=95.30 E-value=0.052 Score=43.90 Aligned_cols=49 Identities=8% Similarity=-0.011 Sum_probs=42.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~ 160 (313)
.+.+|+|+||+-|..++..+-. +...|+|++.+++..+..+++++-+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhhee
Confidence 4789999999999999998854 446899999999999999999877644
No 252
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.07 E-value=0.068 Score=49.46 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=32.5
Q ss_pred CEEEEECCCcChHH----HHHHHHhCC---CcEEEEEcCCHHHHHHHHHH
Q 021397 112 DHVLDLCAAPGAKL----CMILDIIGD---SGSVTGVDVARHRLAACRTL 154 (313)
Q Consensus 112 ~~VLDlcagpG~kt----~~la~~~~~---~~~V~avD~s~~~l~~~~~~ 154 (313)
-+||.+||++|-=. ..+.+..+. ..+|+|.|+|+..++.|++.
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 59999999999643 333443322 35799999999999999865
No 253
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.00 E-value=0.014 Score=57.22 Aligned_cols=99 Identities=12% Similarity=0.087 Sum_probs=54.1
Q ss_pred EEEEECCCcChHHHHHHHHhCCCcEEEEE---cCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCccccccccCccccc
Q 021397 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGV---DVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCN 189 (313)
Q Consensus 113 ~VLDlcagpG~kt~~la~~~~~~~~V~av---D~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~v~~D~~l~~~s~s 189 (313)
.+||+|||.|+++..|.++ +..++++ |.++..++.+- +-|+..-+.+ .-...+++ .|..||.+-|+
T Consensus 120 ~~LDvGcG~aSF~a~l~~r---~V~t~s~a~~d~~~~qvqfal----eRGvpa~~~~--~~s~rLPf--p~~~fDmvHcs 188 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER---NVTTMSFAPNDEHEAQVQFAL----ERGVPAMIGV--LGSQRLPF--PSNAFDMVHCS 188 (506)
T ss_pred EEEeccceeehhHHHHhhC---CceEEEcccccCCchhhhhhh----hcCcchhhhh--hccccccC--Cccchhhhhcc
Confidence 6899999999999999875 2233232 44444443332 2344311111 11123332 45566666676
Q ss_pred ccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCC
Q 021397 190 SVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEE 250 (313)
Q Consensus 190 g~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs 250 (313)
..+- .|...... -.-|+.++++|||+.|+|.=-
T Consensus 189 rc~i-------~W~~~~g~---------------------~l~evdRvLRpGGyfv~S~pp 221 (506)
T PF03141_consen 189 RCLI-------PWHPNDGF---------------------LLFEVDRVLRPGGYFVLSGPP 221 (506)
T ss_pred cccc-------cchhcccc---------------------eeehhhhhhccCceEEecCCc
Confidence 6432 35443211 012455667779999999887
No 254
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.92 E-value=0.026 Score=50.39 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=32.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHH
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~ 149 (313)
+|..+||+||.+||+|..+.+. +..+|+|+|.....+.
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~ 116 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLH 116 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccC
Confidence 5889999999999999999986 3468999999876554
No 255
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.90 E-value=0.043 Score=50.43 Aligned_cols=42 Identities=17% Similarity=0.168 Sum_probs=35.3
Q ss_pred EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHH
Q 021397 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156 (313)
Q Consensus 113 ~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~ 156 (313)
+|+|++||.|+.+.-+.+. + -..|+++|+++..++..+.|..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~ 43 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFP 43 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCC
Confidence 6999999999998887764 3 3468999999999999998863
No 256
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=94.75 E-value=0.041 Score=52.56 Aligned_cols=71 Identities=23% Similarity=0.250 Sum_probs=57.0
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+.....+++..++|++||-|+.+..++..- ...++++|.++-.+.+........++.++..++.+|...-
T Consensus 102 ~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~ 172 (364)
T KOG1269|consen 102 VALRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKM 172 (364)
T ss_pred HHHhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcC
Confidence 3444567788999999999999999999874 3679999999999999888888888776666677776543
No 257
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=94.72 E-value=0.053 Score=47.61 Aligned_cols=83 Identities=17% Similarity=0.254 Sum_probs=45.8
Q ss_pred CeEEEecHHHHHHHHhc--CCCCCCEEEEECCCcChHHHHHHHHh---CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcE
Q 021397 90 GKIYGIDAASGAAVSAL--NISAGDHVLDLCAAPGAKLCMILDII---GDSGSVTGVDVARHRLAACRTLLQKYALGDRC 164 (313)
Q Consensus 90 G~~~~Qd~ss~~~~~~l--~~~~g~~VLDlcagpG~kt~~la~~~---~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v 164 (313)
|.-.+|.+--+.+...+ +++| +.|+++|.+-||-+...|+.+ ++.++|+++|++........ .+.+.+.++|
T Consensus 11 G~pi~q~P~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~~~rI 87 (206)
T PF04989_consen 11 GRPIIQYPQDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPMSPRI 87 (206)
T ss_dssp TEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG----TTE
T ss_pred CeehhcCHHHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--HhhccccCce
Confidence 55556666555443322 2343 699999999999999887654 46689999999655443222 2334455689
Q ss_pred EEEecCCCCCC
Q 021397 165 RLFVADGTTFS 175 (313)
Q Consensus 165 ~~~~~D~~~~d 175 (313)
+++.+|....+
T Consensus 88 ~~i~Gds~d~~ 98 (206)
T PF04989_consen 88 TFIQGDSIDPE 98 (206)
T ss_dssp EEEES-SSSTH
T ss_pred EEEECCCCCHH
Confidence 99999986543
No 258
>PRK11524 putative methyltransferase; Provisional
Probab=94.45 E-value=0.085 Score=48.66 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=37.7
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~ 157 (313)
.+|+.|||-++|+|..+. +|..++ -.-+|+|++++.++.++++++.
T Consensus 207 ~~GD~VLDPF~GSGTT~~-AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGA-VAKASG--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHH-HHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 589999999999987655 455554 3699999999999999988753
No 259
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=94.01 E-value=0.24 Score=40.81 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=33.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397 137 SVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 137 ~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
+|+|.||.+.+++..+++++..++.++++++...-..++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~ 40 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDE 40 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGG
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHh
Confidence 5899999999999999999999988789999888776654
No 260
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.70 E-value=0.12 Score=45.09 Aligned_cols=43 Identities=21% Similarity=0.372 Sum_probs=31.4
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRT 153 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~ 153 (313)
-.+|+.|||-+||+|..+. +|..++ -+-+++|+++..++.+++
T Consensus 189 t~~gdiVlDpF~GSGTT~~-aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAV-AAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHH-HHHHTT---EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHH-HHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 3579999999999987655 445554 479999999999988864
No 261
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=93.64 E-value=0.43 Score=43.71 Aligned_cols=43 Identities=14% Similarity=0.268 Sum_probs=34.0
Q ss_pred CCEEEEECCCcCh----HHHHHHHHhCC----CcEEEEEcCCHHHHHHHHH
Q 021397 111 GDHVLDLCAAPGA----KLCMILDIIGD----SGSVTGVDVARHRLAACRT 153 (313)
Q Consensus 111 g~~VLDlcagpG~----kt~~la~~~~~----~~~V~avD~s~~~l~~~~~ 153 (313)
.-+||-+||++|- .+..+.+..+. ..+|+|.|+|...|+.|++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 4589999999994 45555666542 4689999999999999874
No 262
>PRK13699 putative methylase; Provisional
Probab=93.47 E-value=0.2 Score=44.78 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=39.1
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g 159 (313)
-.+|+.|||-.||+|+...... .++ -..+|+|+++.-.+.+.++++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~-~~~--r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAAL-QSG--RRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHH-HcC--CCEEEEecCHHHHHHHHHHHHHHH
Confidence 3589999999999987665544 444 468999999999999988887653
No 263
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.44 E-value=0.23 Score=46.39 Aligned_cols=73 Identities=18% Similarity=0.285 Sum_probs=53.9
Q ss_pred ccccccCCeEEEecHHH-HHHHHhcCCCCCCEEEEECCCcChH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397 83 TSMAYKQGKIYGIDAAS-GAAVSALNISAGDHVLDLCAAPGAK-LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160 (313)
Q Consensus 83 ~~~~~~~G~~~~Qd~ss-~~~~~~l~~~~g~~VLDlcagpG~k-t~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~ 160 (313)
+.-.|.+|.+ +|..|- .-+....++++|.+||=+||||=|. |...|+.++ ..+|+.+|+++.|++.+++ +|.
T Consensus 142 d~vs~eeGAl-~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~----~Ga 215 (354)
T KOG0024|consen 142 DNVSFEEGAL-IEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK----FGA 215 (354)
T ss_pred CCCchhhccc-ccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH----hCC
Confidence 3344566653 455543 3356677899999999999999555 666677776 4799999999999999885 576
Q ss_pred C
Q 021397 161 G 161 (313)
Q Consensus 161 ~ 161 (313)
.
T Consensus 216 ~ 216 (354)
T KOG0024|consen 216 T 216 (354)
T ss_pred e
Confidence 3
No 264
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=93.00 E-value=0.35 Score=42.81 Aligned_cols=61 Identities=18% Similarity=0.091 Sum_probs=39.8
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
-.+.||+|||-|..|-.+.-.+ -.+|..+|..++.++.+++.+...+ ....++++.-.+.|
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f 116 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDF 116 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG-
T ss_pred cceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhc
Confidence 4689999999999998764322 3589999999999999997654311 11245555555544
No 265
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=92.87 E-value=0.17 Score=45.97 Aligned_cols=57 Identities=23% Similarity=0.281 Sum_probs=42.2
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
+.+|+...|+||.|||+|-++.++ .-.|+|+|.-+-+ +++-..| .|+-...|+..|.
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~ma-----~sL~dtg---~v~h~r~DGfk~~ 265 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGPMA-----QSLMDTG---QVTHLREDGFKFR 265 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccchhh-----hhhhccc---ceeeeeccCcccc
Confidence 458999999999999999998875 4689999975432 2332233 5788888886653
No 266
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=92.28 E-value=0.24 Score=45.80 Aligned_cols=53 Identities=17% Similarity=0.186 Sum_probs=42.2
Q ss_pred EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 113 ~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
+++|++||-||.+.-+.+. + -..|.|+|+++...+..+.|.. ....+|.+.++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g-~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~ 54 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-G-FEVVWAVEIDPDACETYKANFP--------EVICGDITEID 54 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-T-EEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCH
T ss_pred cEEEEccCccHHHHHHHhc-C-cEEEEEeecCHHHHHhhhhccc--------ccccccccccc
Confidence 6999999999999988764 2 2378999999999999998863 56778876554
No 267
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=92.22 E-value=0.84 Score=40.27 Aligned_cols=77 Identities=10% Similarity=0.094 Sum_probs=54.8
Q ss_pred ecHHHHHHHHhcCCCCCCEEEEECCCcCh--HHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397 95 IDAASGAAVSALNISAGDHVLDLCAAPGA--KLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171 (313)
Q Consensus 95 Qd~ss~~~~~~l~~~~g~~VLDlcagpG~--kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~ 171 (313)
|..++.++..+..=.....+++.+|+-|. .|+.|+... ...|+++|+-.++..+...++.+..+|+.+.++++.+|.
T Consensus 26 ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~ 105 (218)
T PF07279_consen 26 EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA 105 (218)
T ss_pred CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC
Confidence 45566776666554555789999776443 344443322 235799999999998888899999899876679998885
No 268
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=91.91 E-value=0.41 Score=43.22 Aligned_cols=61 Identities=13% Similarity=0.065 Sum_probs=43.2
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
.+..+|+|+|||-==.++..-... .+...+|.||+...++.+.+.+..++. +..+...|..
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~ 164 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLL 164 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TT
T ss_pred CCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeee
Confidence 346899999999877776554332 246899999999999999999999997 4566666653
No 269
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=91.53 E-value=0.82 Score=42.06 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=41.9
Q ss_pred CEEEEECCCcChHHHH-HHHHhCCCcEEEEEcCCHHHHHHHHHHHH-HcCCCCcEEEEecCCCCC
Q 021397 112 DHVLDLCAAPGAKLCM-ILDIIGDSGSVTGVDVARHRLAACRTLLQ-KYALGDRCRLFVADGTTF 174 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~-la~~~~~~~~V~avD~s~~~l~~~~~~~~-~~g~~~~v~~~~~D~~~~ 174 (313)
.+|+=+||||=-.|.. +++..+.+..|+++|+++.+.+.+++.++ ..|+..++.++.+|+...
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~ 186 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDV 186 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcc
Confidence 4999999999877654 45554445689999999999999999888 667777899999998654
No 270
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=89.89 E-value=0.9 Score=40.83 Aligned_cols=87 Identities=18% Similarity=0.116 Sum_probs=47.7
Q ss_pred ccccccCCeEEEecHHHHHHHHh-cCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397 83 TSMAYKQGKIYGIDAASGAAVSA-LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG 161 (313)
Q Consensus 83 ~~~~~~~G~~~~Qd~ss~~~~~~-l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~ 161 (313)
....|.+|+......-+...... -.--.|.+||=+| -+-.+...+.+.+....|+.+|+++..++-+++.+++.|+
T Consensus 16 ~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lG--DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl- 92 (243)
T PF01861_consen 16 PDVELDQGYATPETTLRRAALMAERGDLEGKRILFLG--DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGL- 92 (243)
T ss_dssp --GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES---TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--
T ss_pred CccccccccccHHHHHHHHHHHHhcCcccCCEEEEEc--CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCC-
Confidence 34567777777655544332211 1123588998554 6666555555555567999999999999999999999999
Q ss_pred CcEEEEecCCCC
Q 021397 162 DRCRLFVADGTT 173 (313)
Q Consensus 162 ~~v~~~~~D~~~ 173 (313)
+|+.+..|.+.
T Consensus 93 -~i~~~~~DlR~ 103 (243)
T PF01861_consen 93 -PIEAVHYDLRD 103 (243)
T ss_dssp --EEEE---TTS
T ss_pred -ceEEEEecccc
Confidence 49999999863
No 271
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=89.78 E-value=1 Score=43.01 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=39.7
Q ss_pred HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRT 153 (313)
Q Consensus 99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~ 153 (313)
+.++..+.+..+-+.|.|+|+|+|..+..|+-.. +-.|.|+|-|....+++++
T Consensus 142 selvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y--~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 142 SELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY--GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HHHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc--CceEEEeccchHHHHHHHH
Confidence 4445555555666799999999999999998654 4789999999665555543
No 272
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=89.51 E-value=1.1 Score=36.70 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=32.1
Q ss_pred EECCCcC--hHHHHHH-HHhCCCcEEEEEcCCHHHHHHHHHH--HHHcCCCCcEEEEe
Q 021397 116 DLCAAPG--AKLCMIL-DIIGDSGSVTGVDVARHRLAACRTL--LQKYALGDRCRLFV 168 (313)
Q Consensus 116 DlcagpG--~kt~~la-~~~~~~~~V~avD~s~~~l~~~~~~--~~~~g~~~~v~~~~ 168 (313)
|+||.-| ..+..+. +..+..++|+++|.++..++.++++ +.-....+.+++..
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~ 58 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHP 58 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEE
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEE
Confidence 8999999 6655554 2455568999999999999999999 54443222344443
No 273
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=88.76 E-value=1.4 Score=42.07 Aligned_cols=50 Identities=22% Similarity=0.322 Sum_probs=40.2
Q ss_pred HhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH
Q 021397 104 SALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTL 154 (313)
Q Consensus 104 ~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~ 154 (313)
....+++|++||..|+|+ |..+.++|+..+. ..|+++|.++.+++.+++.
T Consensus 178 ~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSH 228 (386)
T ss_pred hhccCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc
Confidence 345677899999999887 7778888888753 4699999999998887753
No 274
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=86.40 E-value=0.96 Score=39.47 Aligned_cols=43 Identities=12% Similarity=0.245 Sum_probs=28.8
Q ss_pred CCEEEEECCCcChHH----HHHHHHhCC----CcEEEEEcCCHHHHHHHHH
Q 021397 111 GDHVLDLCAAPGAKL----CMILDIIGD----SGSVTGVDVARHRLAACRT 153 (313)
Q Consensus 111 g~~VLDlcagpG~kt----~~la~~~~~----~~~V~avD~s~~~l~~~~~ 153 (313)
.-+||.+||++|-=+ ..+.+..+. .-+|+|.|+|+..++.|++
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 358999999999643 333442221 3489999999999998874
No 275
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=86.34 E-value=2.5 Score=42.28 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=55.0
Q ss_pred cCCeEEEecHHHHHHHHhcCCC--CCCEEEEECCCcChHHHHHHHHhC---CCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397 88 KQGKIYGIDAASGAAVSALNIS--AGDHVLDLCAAPGAKLCMILDIIG---DSGSVTGVDVARHRLAACRTLLQKYAL 160 (313)
Q Consensus 88 ~~G~~~~Qd~ss~~~~~~l~~~--~g~~VLDlcagpG~kt~~la~~~~---~~~~V~avD~s~~~l~~~~~~~~~~g~ 160 (313)
..|.++.-..-+.+.+..+++. |+..|.|+|||+|+.-....+.++ ....+++.+....+...++.|+.-++.
T Consensus 193 ~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~ 270 (501)
T TIGR00497 193 SGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI 270 (501)
T ss_pred cCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence 3566666666677777777765 678999999999998765544432 124689999999999999988766665
No 276
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=85.79 E-value=1.6 Score=38.85 Aligned_cols=69 Identities=17% Similarity=0.177 Sum_probs=50.3
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
++...+.-..+.|+++|-||||.|..+.+. +..++..++++...+.-++...+.... +..+..+|+..|
T Consensus 42 IvK~A~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa~~--~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 42 IVKKAGNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAAPG--KLRIHHGDVLRF 110 (326)
T ss_pred HHHhccccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcCCc--ceEEecccccee
Confidence 444455556789999999999999998864 235788888888877777765553333 677888887544
No 277
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=85.58 E-value=1.2 Score=41.94 Aligned_cols=43 Identities=19% Similarity=0.157 Sum_probs=35.7
Q ss_pred CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHH
Q 021397 112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~ 156 (313)
.+++|++||-||...-+.+. + --.+.|+|+++..++..+.|..
T Consensus 4 ~~~idLFsG~GG~~lGf~~a-g-f~~~~a~Eid~~a~~ty~~n~~ 46 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA-G-FEIVFANEIDPPAVATYKANFP 46 (328)
T ss_pred ceEEeeccCCchHHHHHHhc-C-CeEEEEEecCHHHHHHHHHhCC
Confidence 57999999999999777654 2 2468999999999999988764
No 278
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=85.53 E-value=0.97 Score=41.31 Aligned_cols=64 Identities=22% Similarity=0.168 Sum_probs=43.2
Q ss_pred CEEEEECCCc--ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397 112 DHVLDLCAAP--GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 112 ~~VLDlcagp--G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
...||+|||- -+.+-.+|+...+..+|+-+|+++-.+..++..+....- +...++.+|.+..+.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~ 135 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEA 135 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHH
Confidence 5799999994 456778888888889999999999999988887765432 248899999986543
No 279
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.46 E-value=1.6 Score=36.36 Aligned_cols=72 Identities=17% Similarity=0.095 Sum_probs=56.6
Q ss_pred HHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 103 ~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
..++.-.+..+.+|+|+|-|..-++.++.- --.-+++|+++-.+...+-..-|.|+.....+...|.-.+|.
T Consensus 65 LSll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl 136 (199)
T KOG4058|consen 65 LSLLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDL 136 (199)
T ss_pred HHHccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccc
Confidence 334444566789999999999988887752 235789999999998888878888888778888888877765
No 280
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=85.14 E-value=6.6 Score=37.15 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=44.6
Q ss_pred hcCCCCC----CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397 105 ALNISAG----DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171 (313)
Q Consensus 105 ~l~~~~g----~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~ 171 (313)
.+....| ...+|+|+|.|..+-.+....+ .|-+++.+..-+-.++..+. .| |+.+-+|+
T Consensus 168 il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~-~g----V~~v~gdm 230 (342)
T KOG3178|consen 168 ILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA-PG----VEHVAGDM 230 (342)
T ss_pred hhhhhcccccCceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc-CC----cceecccc
Confidence 3444455 7899999999999999988654 48899999888877776664 44 55667776
No 281
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=85.00 E-value=0.23 Score=43.64 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=33.8
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRT 153 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~ 153 (313)
..++||+|||-|-.|.+++-.. .+|+|.+.|..|..+++.
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK 152 (288)
T ss_pred CeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh
Confidence 3589999999999999998765 369999999998877664
No 282
>PRK10458 DNA cytosine methylase; Provisional
Probab=84.23 E-value=3.1 Score=41.22 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=35.6
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~ 155 (313)
.-+++|++||.||.+.-+-.. + .-.|.++|+++...+.-+.|.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHc
Confidence 458999999999999888553 3 236899999999999888874
No 283
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=83.96 E-value=1.3 Score=38.65 Aligned_cols=43 Identities=21% Similarity=0.239 Sum_probs=37.4
Q ss_pred HhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHH
Q 021397 104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146 (313)
Q Consensus 104 ~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~ 146 (313)
.+.++++|++|+|+--|.|.+|..++..++.+|.|++.=..+.
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL 84 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence 3557899999999999999999999999999999998765443
No 284
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=83.37 E-value=0.46 Score=45.13 Aligned_cols=34 Identities=32% Similarity=0.668 Sum_probs=28.4
Q ss_pred hhhcccceeeccccccCCCccccccccccccccc
Q 021397 261 SSSGYDKVLVDAECTHDGSIKHIQKFENWGWTTL 294 (313)
Q Consensus 261 v~~~~~~~l~d~e~~~~~~~~~~~~~~~w~~~~~ 294 (313)
....||+||+|++|+.|+.+++.+.+-.|+|.+-
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~ 266 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQ 266 (375)
T ss_pred hhhhcceeEEecccCCCcccccCchHhhhhhhhh
Confidence 3568999999999999999999988877765543
No 285
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=83.09 E-value=3 Score=39.54 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=37.4
Q ss_pred cCCCCCCEEEEECCC-cChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397 106 LNISAGDHVLDLCAA-PGAKLCMILDIIGDSGSVTGVDVARHRLAACRT 153 (313)
Q Consensus 106 l~~~~g~~VLDlcag-pG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~ 153 (313)
.+++||++|+=.|+| -|..+.++|+.++ .+|+|+|+++++++.+++
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~ 208 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKK 208 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHH
Confidence 567899999888877 4456778888776 799999999999987764
No 286
>PRK00536 speE spermidine synthase; Provisional
Probab=83.05 E-value=6.7 Score=35.85 Aligned_cols=75 Identities=11% Similarity=0.004 Sum_probs=52.3
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc--CC-CCcEEEEec----CCCCC
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY--AL-GDRCRLFVA----DGTTF 174 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--g~-~~~v~~~~~----D~~~~ 174 (313)
++....+.| .+||=+|.|-|+....+.+. + .+|+-||+++..++.+++-+-.. ++ +.+++++.. +...|
T Consensus 65 ppl~~h~~p-k~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~~~~~~~~~f 140 (262)
T PRK00536 65 MGGCTKKEL-KEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKY 140 (262)
T ss_pred HHHhhCCCC-CeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeehhhhccCCcC
Confidence 344444444 79999999999999999886 2 49999999999999999854332 12 235666542 12356
Q ss_pred Cccccc
Q 021397 175 SLAPLR 180 (313)
Q Consensus 175 d~v~~D 180 (313)
|.+.+|
T Consensus 141 DVIIvD 146 (262)
T PRK00536 141 DLIICL 146 (262)
T ss_pred CEEEEc
Confidence 666666
No 287
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=82.63 E-value=0.41 Score=42.33 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=44.4
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~ 155 (313)
+.+.+.|.+|...+||--|.||.|..|.+.-+ ..+++|.|.+|-+-+.++...
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~s-e~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKHS-ELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHhCc-HhhhhhhccChHHHHHHHHhh
Confidence 56788899999999999999999999999865 478999999987766655444
No 288
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.54 E-value=3.6 Score=38.56 Aligned_cols=56 Identities=11% Similarity=0.179 Sum_probs=43.0
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG 161 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~ 161 (313)
+....+++||++|.=.|.|.=|.+...-.+..+.++|+|+|+++++.+.++ ++|..
T Consensus 184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak----~fGaT 239 (375)
T KOG0022|consen 184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK----EFGAT 239 (375)
T ss_pred hhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH----hcCcc
Confidence 445667899999999988876766655545555689999999999998876 45654
No 289
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=82.43 E-value=3 Score=40.17 Aligned_cols=62 Identities=23% Similarity=0.238 Sum_probs=42.8
Q ss_pred cCCeEEEe-cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 88 KQGKIYGI-DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 88 ~~G~~~~Q-d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
..+++|-| .+....-..+|++.|+++||=+++|- ..++.++. .+..+|+|||+|+..+..++
T Consensus 12 f~~lvY~~~WEDp~vD~~aL~i~~~d~vl~ItSaG-~N~L~yL~--~~P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 12 FRGLVYAQCWEDPRVDMEALNIGPDDRVLTITSAG-CNALDYLL--AGPKRIHAVDLNPAQNALLE 74 (380)
T ss_pred ccceeeccccCCcHHHHHHhCCCCCCeEEEEccCC-chHHHHHh--cCCceEEEEeCCHHHHHHHH
Confidence 33555554 23344556789999999999997664 44444432 34579999999999877666
No 290
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.99 E-value=2.3 Score=39.84 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=33.0
Q ss_pred EEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH
Q 021397 114 VLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155 (313)
Q Consensus 114 VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~ 155 (313)
|+|++||.||.+.-+.+. + --.|.|+|+++..++..+.|.
T Consensus 1 vidLF~G~GG~~~Gl~~a-G-~~~~~a~e~~~~a~~ty~~N~ 40 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-G-FKCVFASEIDKYAQKTYEANF 40 (315)
T ss_pred CEEEecCccHHHHHHHHc-C-CeEEEEEeCCHHHHHHHHHhC
Confidence 689999999999888653 2 235788999999999988875
No 291
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=81.18 E-value=4.7 Score=38.15 Aligned_cols=57 Identities=18% Similarity=0.251 Sum_probs=42.8
Q ss_pred HHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG 161 (313)
Q Consensus 101 ~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~ 161 (313)
.+...+++++|++|.=.|+|-=|.+......+-+.++|+|+|+++.+++.++ ++|..
T Consensus 176 av~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~----~fGAT 232 (366)
T COG1062 176 AVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK----KFGAT 232 (366)
T ss_pred HhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH----hcCCc
Confidence 3566788999999999998865555444444445689999999999998876 45654
No 292
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=79.75 E-value=4.8 Score=40.21 Aligned_cols=62 Identities=10% Similarity=0.087 Sum_probs=48.7
Q ss_pred EEEEECCCcChH---HHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 113 HVLDLCAAPGAK---LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 113 ~VLDlcagpG~k---t~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
.|+=+|+|.|-. ++.+|+....+.+++|+|.++.++-.++. .+....+++|+++..|++.+.
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ 434 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWN 434 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccC
Confidence 578889999865 55666666667889999999999988775 444455568999999998765
No 293
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=79.43 E-value=3.4 Score=32.03 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=36.9
Q ss_pred CCcChHHHHHHHHhCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 119 AAPGAKLCMILDIIGDSG-SVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 119 agpG~kt~~la~~~~~~~-~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
||.|..+..+++.+...+ .|+.+|.++..++.+++. | +.++.+|+.+.+
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~ 53 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPE 53 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhh
Confidence 677889999988876666 899999999998777643 2 568899987644
No 294
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=79.37 E-value=3.8 Score=37.73 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=38.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
.|..++|.|||-|--+. ..+...+++.|++..-+..+++ .|. ..+..+|+...+.
T Consensus 45 ~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~----~~~---~~~~~ad~l~~p~ 99 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKR----SGG---DNVCRADALKLPF 99 (293)
T ss_pred CcceeeecccCCcccCc-----CCCcceeeecchhhhhcccccc----CCC---ceeehhhhhcCCC
Confidence 48899999999985542 1123579999999887766552 221 2577888877664
No 295
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=78.34 E-value=6.1 Score=39.62 Aligned_cols=45 Identities=13% Similarity=0.048 Sum_probs=36.5
Q ss_pred CCCCCCEEEEECCCcChH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397 107 NISAGDHVLDLCAAPGAK-LCMILDIIGDSGSVTGVDVARHRLAACRT 153 (313)
Q Consensus 107 ~~~~g~~VLDlcagpG~k-t~~la~~~~~~~~V~avD~s~~~l~~~~~ 153 (313)
+..++++|+=+|||+=|. ++..|+.++ ..|+++|.++.+++.+++
T Consensus 161 G~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes 206 (509)
T PRK09424 161 GKVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 356899999999999765 556677776 479999999999987764
No 296
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=78.18 E-value=8.8 Score=36.40 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=36.8
Q ss_pred CCCCCCEEEEECCCcChH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHHH
Q 021397 107 NISAGDHVLDLCAAPGAK-LCMILDIIGDSGSVTGVDVARHRLAACRTL 154 (313)
Q Consensus 107 ~~~~g~~VLDlcagpG~k-t~~la~~~~~~~~V~avD~s~~~l~~~~~~ 154 (313)
..+++.+|+=+||||=|. +.++++.++ ...|+++|+++.|++.+++.
T Consensus 165 ~~~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 165 AVRPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHh
Confidence 345566999999999555 466666665 47999999999999998853
No 297
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=77.03 E-value=5.9 Score=36.15 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=46.8
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhC----CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIG----DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~----~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
.+...++|+|||.|..|.++++.+. ....++.||....|.+ .-..++.......++=+..|...++.
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K-~D~~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK-ADNKIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc-chhhhhccCCCCceEEEEEEeeccch
Confidence 5667999999999999999999884 2357999999777663 33333333211146667778777664
No 298
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=77.00 E-value=6.3 Score=34.82 Aligned_cols=60 Identities=10% Similarity=-0.001 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
+.-.++..+....++..|-|+|||-+..+.. +++.-.|...|+-.. +-.++.+|+.+.|.
T Consensus 59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~----~~~~~~V~SfDLva~----------------n~~Vtacdia~vPL 118 (219)
T PF05148_consen 59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKA----VPNKHKVHSFDLVAP----------------NPRVTACDIANVPL 118 (219)
T ss_dssp HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH------S---EEEEESS-S----------------STTEEES-TTS-S-
T ss_pred cHHHHHHHHHhcCCCEEEEECCCchHHHHHh----cccCceEEEeeccCC----------------CCCEEEecCccCcC
Confidence 3333333333333457999999999877643 344457999997542 12367899988774
No 299
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=76.67 E-value=9.7 Score=35.69 Aligned_cols=45 Identities=20% Similarity=0.399 Sum_probs=34.4
Q ss_pred cCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 106 LNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 106 l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
..+++|++||=.|||+ |..+.++|+.++ ..|+++|.++.+++.++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~ 207 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMK 207 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHH
Confidence 4678899999999855 445566677664 47999999999987665
No 300
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=75.22 E-value=15 Score=33.35 Aligned_cols=69 Identities=17% Similarity=0.187 Sum_probs=47.1
Q ss_pred HHhcCCCCCCEEEEECCCcChHHHHHHHHhCCC---cEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCC
Q 021397 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDS---GSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171 (313)
Q Consensus 103 ~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~---~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~ 171 (313)
+++.....+...+|+|+|.-.||..+...+... .+-+.+|+|...++...+.+.+--..-.+.-+++|.
T Consensus 71 ~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~ 142 (321)
T COG4301 71 AEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDY 142 (321)
T ss_pred HHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhH
Confidence 334444558899999999999999998876532 367999999999877655544332211344555554
No 301
>PRK07904 short chain dehydrogenase; Provisional
Probab=74.05 E-value=15 Score=32.74 Aligned_cols=65 Identities=9% Similarity=0.003 Sum_probs=46.3
Q ss_pred CCCCEEEEECCCcChHHHHHHHHh-CCC-cEEEEEcCCHHH-HHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDII-GDS-GSVTGVDVARHR-LAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~-~~~-~~V~avD~s~~~-l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
..+.+||=.|| +|+.+..+++.+ ... ..|++++.++.. ++.+.+.++..+.. +++++..|..+..
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~-~v~~~~~D~~~~~ 73 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGAS-SVEVIDFDALDTD 73 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCC-ceEEEEecCCChH
Confidence 34667887777 578888888765 322 489999998775 77776666665532 6888999986543
No 302
>PRK06949 short chain dehydrogenase; Provisional
Probab=73.37 E-value=20 Score=31.54 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=45.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
.+.+||=.| |+|+.+.++++.+.. +..|++++.+++.++.+...++..+. ++.++..|...
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~ 69 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG--AAHVVSLDVTD 69 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEecCCC
Confidence 467888777 667888888876643 34799999999998888777665543 57888888864
No 303
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=73.11 E-value=2.3 Score=38.78 Aligned_cols=73 Identities=11% Similarity=0.098 Sum_probs=43.3
Q ss_pred CcccccccCCeEE-----EecHHHHHHHHhcCCCCC-CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHH
Q 021397 81 IATSMAYKQGKIY-----GIDAASGAAVSALNISAG-DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL 154 (313)
Q Consensus 81 ~~~~~~~~~G~~~-----~Qd~ss~~~~~~l~~~~g-~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~ 154 (313)
+.....|+.|+-+ .-.+-- .++..+.-.|+ ..|-|+|||-+-.+. +....|.+.|+..
T Consensus 146 p~afdlYH~gfr~QV~kWP~nPld-~ii~~ik~r~~~~vIaD~GCGEakiA~------~~~~kV~SfDL~a--------- 209 (325)
T KOG3045|consen 146 PTAFDLYHAGFRSQVKKWPENPLD-VIIRKIKRRPKNIVIADFGCGEAKIAS------SERHKVHSFDLVA--------- 209 (325)
T ss_pred cHHHHHHHHHHHHHHHhCCCChHH-HHHHHHHhCcCceEEEecccchhhhhh------ccccceeeeeeec---------
Confidence 3446678887621 011111 13334444444 578999999976654 2235799999643
Q ss_pred HHHcCCCCcEEEEecCCCCCCc
Q 021397 155 LQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 155 ~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
+ +-+++.+|+++.+.
T Consensus 210 -----~--~~~V~~cDm~~vPl 224 (325)
T KOG3045|consen 210 -----V--NERVIACDMRNVPL 224 (325)
T ss_pred -----C--CCceeeccccCCcC
Confidence 1 34578889988664
No 304
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=72.66 E-value=4.6 Score=36.25 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=47.9
Q ss_pred hcCCC-CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCc
Q 021397 105 ALNIS-AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSL 176 (313)
Q Consensus 105 ~l~~~-~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d~ 176 (313)
+.+.+ ....++|+||+-|....++... +-++++-+|.|-.|++.++.. +..++ .+....+|-+.+|+
T Consensus 66 vfD~kk~fp~a~diGcs~G~v~rhl~~e--~vekli~~DtS~~M~~s~~~~-qdp~i--~~~~~v~DEE~Ldf 133 (325)
T KOG2940|consen 66 VFDCKKSFPTAFDIGCSLGAVKRHLRGE--GVEKLIMMDTSYDMIKSCRDA-QDPSI--ETSYFVGDEEFLDF 133 (325)
T ss_pred HHHHhhhCcceeecccchhhhhHHHHhc--chhheeeeecchHHHHHhhcc-CCCce--EEEEEecchhcccc
Confidence 34444 3468999999999999998764 346899999999999987743 22333 34556777766663
No 305
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=69.86 E-value=10 Score=33.62 Aligned_cols=99 Identities=16% Similarity=0.047 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCCC----C----CCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 021397 97 AASGAAVSALNIS----A----GDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFV 168 (313)
Q Consensus 97 ~ss~~~~~~l~~~----~----g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~ 168 (313)
.+|.+++.+|... . .-++||+||=+......... --.|+++|+++. .-.+.+
T Consensus 30 dSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~----~fdvt~IDLns~----------------~~~I~q 89 (219)
T PF11968_consen 30 DSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG----WFDVTRIDLNSQ----------------HPGILQ 89 (219)
T ss_pred chhHHHHHHhhhhccccccccccceEEeecccCCCCcccccC----ceeeEEeecCCC----------------CCCcee
Confidence 3666666666422 1 24899999986554433222 235999998761 123566
Q ss_pred cCCCCCCccccc-cccCcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhcccc
Q 021397 169 ADGTTFSLAPLR-LLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSE 230 (313)
Q Consensus 169 ~D~~~~d~v~~D-~~l~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~ 230 (313)
.|....+...-+ ..|+.++||=++.--|+...+ -+++.++-+.+++.
T Consensus 90 qDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~R---------------G~Ml~r~~~fL~~~ 137 (219)
T PF11968_consen 90 QDFMERPLPKNESEKFDVISLSLVLNFVPDPKQR---------------GEMLRRAHKFLKPP 137 (219)
T ss_pred eccccCCCCCCcccceeEEEEEEEEeeCCCHHHH---------------HHHHHHHHHHhCCC
Confidence 777665543233 567778999998777765222 34556667777763
No 306
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=69.41 E-value=7.2 Score=35.09 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=37.2
Q ss_pred CCEEEEECCCcChHHHHHHHHhCC-------CcEEEEEcCCHHHHHHHHHHHHH
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGD-------SGSVTGVDVARHRLAACRTLLQK 157 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~-------~~~V~avD~s~~~l~~~~~~~~~ 157 (313)
.-+|+++|+|.|..+..+.+.+.. ..+++-+|+|+.+.+.-++.++.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 359999999999999999988753 25799999999998888877755
No 307
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=68.95 E-value=17 Score=35.21 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=24.4
Q ss_pred CcChHHHHHHHHhCCC-cEEEEEcCCHHHHHHHH
Q 021397 120 APGAKLCMILDIIGDS-GSVTGVDVARHRLAACR 152 (313)
Q Consensus 120 gpG~kt~~la~~~~~~-~~V~avD~s~~~l~~~~ 152 (313)
|-|+.++.+|-..... -.|+|+||++.+++.+.
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln 49 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLN 49 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHh
Confidence 5667776666554333 58999999999998776
No 308
>PRK06940 short chain dehydrogenase; Provisional
Probab=68.54 E-value=31 Score=31.07 Aligned_cols=58 Identities=19% Similarity=0.113 Sum_probs=42.6
Q ss_pred EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 113 ~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+|=.|+ |+.+.++++.+..+..|+.+|.++..++.+.+.++..+. ++.++..|..+.
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~ 61 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF--DVSTQEVDVSSR 61 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEeecCCH
Confidence 4554454 689999998886556899999998888777666665553 577888888653
No 309
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=68.27 E-value=7.5 Score=34.93 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=50.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc-CCCCcEEEEec-C-----------CCCCCc
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY-ALGDRCRLFVA-D-----------GTTFSL 176 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~-g~~~~v~~~~~-D-----------~~~~d~ 176 (313)
++-++||+|.|---.--.+...+- +-..++.|+++..++.++.++..+ ++...|++... | .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 456889999886554444443332 257899999999999999999877 66555666532 2 134666
Q ss_pred cccccccC
Q 021397 177 APLRLLLD 184 (313)
Q Consensus 177 v~~D~~l~ 184 (313)
.+.+|-|.
T Consensus 157 tlCNPPFh 164 (292)
T COG3129 157 TLCNPPFH 164 (292)
T ss_pred EecCCCcc
Confidence 67776654
No 310
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=68.06 E-value=17 Score=33.95 Aligned_cols=47 Identities=6% Similarity=-0.065 Sum_probs=33.1
Q ss_pred CCCCCCEEEEECCCcChH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397 107 NISAGDHVLDLCAAPGAK-LCMILDIIGDSGSVTGVDVARHRLAACRT 153 (313)
Q Consensus 107 ~~~~g~~VLDlcagpG~k-t~~la~~~~~~~~V~avD~s~~~l~~~~~ 153 (313)
.+++|++||=.|||+=|. +.++++.+.+...|+++|.++.+++.+++
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 467899999998755443 23455543223579999999999988764
No 311
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=68.03 E-value=24 Score=30.88 Aligned_cols=63 Identities=10% Similarity=-0.087 Sum_probs=45.6
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
+.++.+||=.|+ +|+.+..+++.+.. +..|+++|.+...++.+.+.++..+.. ++.++..|..
T Consensus 9 ~~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~d~~ 72 (247)
T PRK08945 9 LLKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGP-QPAIIPLDLL 72 (247)
T ss_pred ccCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEeccc
Confidence 446788888884 67788777766532 348999999998888777777766543 5677777764
No 312
>PRK06172 short chain dehydrogenase; Provisional
Probab=67.94 E-value=36 Score=29.83 Aligned_cols=62 Identities=11% Similarity=-0.035 Sum_probs=45.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+.+||=.|+ +|+.+..+++.+. .+..|+.++.++..++.+.+.++..+. ++.++..|..+.
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~ 68 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG--EALFVACDVTRD 68 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCH
Confidence 4678888886 5667777766553 335899999999888877777766653 688889998653
No 313
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=67.49 E-value=25 Score=30.70 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=33.5
Q ss_pred CCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 108 ISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 108 ~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
+.+|++||-.|+|+ |..+.++++..+ ..|++++.++.+.+.++
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHH
Confidence 37899999999886 555666776654 68999999988877664
No 314
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=67.45 E-value=20 Score=32.78 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=33.2
Q ss_pred CCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 107 NISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 107 ~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
.++++++||..|+|. |..+.++|+..+ ..|++++.++.+.+.++
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~ 206 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAK 206 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHH
Confidence 467899999977653 566677777764 56999999998887664
No 315
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=67.44 E-value=20 Score=33.16 Aligned_cols=86 Identities=14% Similarity=0.164 Sum_probs=59.0
Q ss_pred ccccccCCeEEEecHHHHHHHHhcC---CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397 83 TSMAYKQGKIYGIDAASGAAVSALN---ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159 (313)
Q Consensus 83 ~~~~~~~G~~~~Qd~ss~~~~~~l~---~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g 159 (313)
-...|.+|+..+--..|.. .++. --.|..|+=+| --..|...+.+.+-.-+|..+||++..+....+-++.+|
T Consensus 124 p~~~yDQgfvTpEttv~Rv--~lm~~RGDL~gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g 199 (354)
T COG1568 124 PLHQYDQGFVTPETTVSRV--ALMYSRGDLEGKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELG 199 (354)
T ss_pred cchhcccccccccceeeee--eeeccccCcCCCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhC
Confidence 3456777877665443332 2222 23477899888 334444444444434589999999999999999999999
Q ss_pred CCCcEEEEecCCCC
Q 021397 160 LGDRCRLFVADGTT 173 (313)
Q Consensus 160 ~~~~v~~~~~D~~~ 173 (313)
+. |++.+..|.++
T Consensus 200 ~~-~ie~~~~Dlr~ 212 (354)
T COG1568 200 YN-NIEAFVFDLRN 212 (354)
T ss_pred cc-chhheeehhcc
Confidence 95 79999999863
No 316
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=66.64 E-value=5.6 Score=36.61 Aligned_cols=38 Identities=21% Similarity=0.137 Sum_probs=30.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHH
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLA 149 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~ 149 (313)
.|.+|||+|||+|-..+.+... ....+...|.+..-++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~--~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVK--GAVSVHFQDFNAEVLR 153 (282)
T ss_pred cCceeEecCCcccccchhhhhh--ccceeeeEecchhhee
Confidence 5889999999999999887764 2367899999887663
No 317
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=66.44 E-value=22 Score=33.66 Aligned_cols=47 Identities=11% Similarity=0.210 Sum_probs=33.0
Q ss_pred cCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397 106 LNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRT 153 (313)
Q Consensus 106 l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~ 153 (313)
..+++|++||=.|||+ |..+.++|+.++. ..|+++|.++.+++.+++
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAIDINPAKFELAKK 228 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH
Confidence 4678899999887643 2334556666542 379999999999887753
No 318
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=66.31 E-value=15 Score=33.39 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=39.6
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g 159 (313)
-.+|+.|||-.+|+|....+... ++ -..+++|+++.-++.+.+++++..
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~-~~--r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKN-LG--RRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHH-cC--CceEEEecCHHHHHHHHHHHHhhc
Confidence 46899999999999887665544 43 468999999999999998887654
No 319
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=65.65 E-value=9.1 Score=34.13 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=30.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHH
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~ 156 (313)
+..+++|..||+|+.+..+... ...|+.+|+++.-....+..++
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~---~~~vi~ND~~~~l~~~~~~~l~ 63 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQP---GKRVIINDINPDLINFWKAVLK 63 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccc---ccceeeeechHHHHHHHHHHHh
Confidence 6889999999999999888762 3689999999976665553443
No 320
>PTZ00357 methyltransferase; Provisional
Probab=65.20 E-value=26 Score=36.54 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=42.6
Q ss_pred EEEEECCCcChH---HHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH---HHcC-----CCCcEEEEecCCCCCC
Q 021397 113 HVLDLCAAPGAK---LCMILDIIGDSGSVTGVDVARHRLAACRTLL---QKYA-----LGDRCRLFVADGTTFS 175 (313)
Q Consensus 113 ~VLDlcagpG~k---t~~la~~~~~~~~V~avD~s~~~l~~~~~~~---~~~g-----~~~~v~~~~~D~~~~d 175 (313)
.|+=+|||.|-. ++.+++..+-..+|+|+|.++..+.....+. .... ..++|+++..|++.+.
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~ 776 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIA 776 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccc
Confidence 589999999987 4445555555678999999966443333332 2221 1246999999998874
No 321
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=64.70 E-value=22 Score=33.37 Aligned_cols=47 Identities=19% Similarity=0.271 Sum_probs=32.3
Q ss_pred hcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 105 ALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 105 ~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
...+++|++||=.|+|+ |..+.++|+.++. ..|+++|.++.+++.++
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~ 218 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWAR 218 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHH
Confidence 34578899999887643 2234455665531 25999999999988775
No 322
>PRK06914 short chain dehydrogenase; Provisional
Probab=64.69 E-value=47 Score=29.66 Aligned_cols=63 Identities=8% Similarity=-0.118 Sum_probs=43.6
Q ss_pred CCEEEEECCCcChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+..+|=.| |+|+.+..+++.+ ..+..|++++.++..++...+.+...+...++.++..|..+.
T Consensus 3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~ 66 (280)
T PRK06914 3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQ 66 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCH
Confidence 44566666 5556677776654 334589999999888877776666555444688889998654
No 323
>PRK05599 hypothetical protein; Provisional
Probab=64.51 E-value=37 Score=29.93 Aligned_cols=60 Identities=10% Similarity=0.045 Sum_probs=44.1
Q ss_pred EEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 113 HVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 113 ~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+|=.|+ ++|.+..+++.+..+..|+.++.++..++.+.+.++..+- +.+.++..|..+.
T Consensus 2 ~vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~ 61 (246)
T PRK05599 2 SILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDL 61 (246)
T ss_pred eEEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCH
Confidence 4565565 4677888887765567899999999999888877776653 2477888888654
No 324
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=64.41 E-value=23 Score=36.63 Aligned_cols=35 Identities=3% Similarity=-0.106 Sum_probs=26.8
Q ss_pred CCEEEEECCCcChHHHHHHHHh-------CC----CcEEEEEcCCH
Q 021397 111 GDHVLDLCAAPGAKLCMILDII-------GD----SGSVTGVDVAR 145 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~-------~~----~~~V~avD~s~ 145 (313)
.-+|+|+|=|+|..++...+.. ++ .-+++++|..+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p 103 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFP 103 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCC
Confidence 3589999999999988777655 11 24789999765
No 325
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=64.31 E-value=39 Score=29.76 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=46.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+.++|=.| |+|+.+.++++.+.. +..|+.++.+...++.+...++..+. ++.++.+|..+.
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~Dl~d~ 73 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI--DALWIAADVADE 73 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEccCCCH
Confidence 467788777 567888888877632 34899999999888877777766553 578889998754
No 326
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=63.25 E-value=29 Score=32.28 Aligned_cols=51 Identities=8% Similarity=-0.048 Sum_probs=35.4
Q ss_pred hcCCCCCCEEEEECCCcCh-HHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q 021397 105 ALNISAGDHVLDLCAAPGA-KLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG 161 (313)
Q Consensus 105 ~l~~~~g~~VLDlcagpG~-kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~ 161 (313)
...+++|++||=.|+|+-+ .+.++|+.++ ..|++++.++++++.++ ++|.+
T Consensus 160 ~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~----~~Ga~ 211 (329)
T TIGR02822 160 RASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLAL----ALGAA 211 (329)
T ss_pred hcCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHH----HhCCc
Confidence 3567899999998875433 2345566554 47999999999876554 46763
No 327
>PRK07063 short chain dehydrogenase; Provisional
Probab=63.22 E-value=53 Score=28.96 Aligned_cols=64 Identities=20% Similarity=0.117 Sum_probs=45.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+.+||=.|++ |+.+..+++.+- .+..|+.++.++..++.+.+.++..+...++.++..|..+.
T Consensus 6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 70 (260)
T PRK07063 6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDA 70 (260)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCH
Confidence 46788888865 677777777553 34589999999998888877776532223688888898653
No 328
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=63.07 E-value=14 Score=34.31 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=41.8
Q ss_pred ccCCeEEEe-cHHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHH
Q 021397 87 YKQGKIYGI-DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155 (313)
Q Consensus 87 ~~~G~~~~Q-d~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~ 155 (313)
+..|+.|.| ++.+..=..++...+|.+|.-+|+|-=..-.+++. ....|.+||+++..+..-+-.+
T Consensus 39 lFsgLvYpqiwEDp~Vdmeam~~g~ghrivtigSGGcn~L~ylsr---~Pa~id~VDlN~ahiAln~lkl 105 (414)
T COG5379 39 LFSGLVYPQIWEDPSVDMEAMQLGIGHRIVTIGSGGCNMLAYLSR---APARIDVVDLNPAHIALNRLKL 105 (414)
T ss_pred HhcccccccccCCccccHHHHhcCCCcEEEEecCCcchHHHHhhc---CCceeEEEeCCHHHHHHHHHHH
Confidence 345566655 22233334455567888999888775444445543 3478999999999877655433
No 329
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=62.60 E-value=30 Score=32.28 Aligned_cols=48 Identities=17% Similarity=0.213 Sum_probs=33.2
Q ss_pred cCCCCCCEEEEECCCcChHH---HHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397 106 LNISAGDHVLDLCAAPGAKL---CMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160 (313)
Q Consensus 106 l~~~~g~~VLDlcagpG~kt---~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~ 160 (313)
....+|++||=.|| |+.+ .++|+.++ ...|+++|.++++++.++ ++|.
T Consensus 165 ~~~~~g~~VlV~G~--G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~----~lGa 215 (343)
T PRK09880 165 AGDLQGKRVFVSGV--GPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLAR----EMGA 215 (343)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHH----HcCC
Confidence 34567999998876 4454 45555554 237999999999988765 3565
No 330
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=62.15 E-value=26 Score=31.29 Aligned_cols=57 Identities=12% Similarity=0.056 Sum_probs=42.7
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA 169 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~ 169 (313)
.+|.+||.+|=|-|-..+.+-+.-+ ..-+-++.++..+++++...=+ -.+||.++.+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p--~~H~IiE~hp~V~krmr~~gw~--ek~nViil~g 156 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPP--DEHWIIEAHPDVLKRMRDWGWR--EKENVIILEG 156 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCC--cceEEEecCHHHHHHHHhcccc--cccceEEEec
Confidence 6799999999999999888877633 4566789999999888865322 2246766655
No 331
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=62.03 E-value=14 Score=35.30 Aligned_cols=40 Identities=25% Similarity=0.276 Sum_probs=28.7
Q ss_pred CEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHH
Q 021397 112 DHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAAC 151 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~ 151 (313)
++|||+|+|||.-..++-...+.-..++-++.|+..-+..
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~ 154 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVG 154 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHH
Confidence 5699999999988777666666545677777777544333
No 332
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=62.01 E-value=55 Score=28.43 Aligned_cols=61 Identities=8% Similarity=0.074 Sum_probs=44.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
+|.++|=.|+ .|+.+..+++.+. .+..|+.+|.++.+++.+.+.++..+. ++.++..|...
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~ 65 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT--EVRGYAANVTD 65 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCC
Confidence 4678887775 5677777777553 335799999999888877777666553 57788888754
No 333
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=61.81 E-value=10 Score=29.77 Aligned_cols=34 Identities=15% Similarity=0.266 Sum_probs=28.1
Q ss_pred cChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397 121 PGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160 (313)
Q Consensus 121 pG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~ 160 (313)
-|..+.++|+.++ .+|+++|.++.+++.++ ++|.
T Consensus 2 vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~----~~Ga 35 (130)
T PF00107_consen 2 VGLMAIQLAKAMG--AKVIATDRSEEKLELAK----ELGA 35 (130)
T ss_dssp HHHHHHHHHHHTT--SEEEEEESSHHHHHHHH----HTTE
T ss_pred hHHHHHHHHHHcC--CEEEEEECCHHHHHHHH----hhcc
Confidence 4778899999886 79999999999987765 4664
No 334
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=61.79 E-value=28 Score=32.89 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=31.9
Q ss_pred hcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 105 ALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 105 ~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
...+++|++||=.|+|+ |..+.++|+..+. ..|+++|.++.+++.++
T Consensus 186 ~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~-~~Vi~~~~~~~r~~~a~ 233 (371)
T cd08281 186 TAGVRPGQSVAVVGLGGVGLSALLGAVAAGA-SQVVAVDLNEDKLALAR 233 (371)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHH
Confidence 34578899998887643 2233445555432 26999999999988765
No 335
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=61.10 E-value=31 Score=30.73 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=34.4
Q ss_pred HHhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 103 VSALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 103 ~~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
.....+++|++||=.|+|+ |..+..+|+.++. ..|++++.++++++.++
T Consensus 90 ~~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~ 139 (277)
T cd08255 90 VRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAE 139 (277)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEECCCHHHHHHHH
Confidence 3456778899998887654 4455666776652 24999999999877554
No 336
>PRK07677 short chain dehydrogenase; Provisional
Probab=60.22 E-value=58 Score=28.55 Aligned_cols=60 Identities=7% Similarity=0.060 Sum_probs=41.7
Q ss_pred CCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
|.++|=.|+ .|+.+..+++.+. .+..|+.++.++..++.+.+.++..+ .++.++..|..+
T Consensus 1 ~k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~ 61 (252)
T PRK07677 1 EKVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRN 61 (252)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCC
Confidence 356776666 4556666666543 33589999999988887777666554 268888888864
No 337
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=59.53 E-value=65 Score=28.23 Aligned_cols=61 Identities=15% Similarity=-0.005 Sum_probs=45.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
.|.+||=.|+ .|+.+..+++.+. .+..|+.++.+++.++.+.+.+++.+. ++.++..|...
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~ 71 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG--AAEALAFDIAD 71 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCC
Confidence 4778887875 5677777776552 346899999998888777777766653 57888888764
No 338
>PRK05867 short chain dehydrogenase; Provisional
Probab=57.75 E-value=68 Score=28.13 Aligned_cols=62 Identities=10% Similarity=-0.102 Sum_probs=45.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|..+|=.|++ |+.+..+++.+. .+..|+.++.+...++.+.+.++..+. ++..+..|..+.
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~ 70 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGG--KVVPVCCDVSQH 70 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC--eEEEEEccCCCH
Confidence 46788888865 566777776653 335899999999888888777766653 577888888653
No 339
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=55.71 E-value=78 Score=28.02 Aligned_cols=61 Identities=13% Similarity=0.070 Sum_probs=44.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
.+.++|=.|++. +.+..+++.+ ..+..|+.++.++..++.+.+.++..+. ++.++..|.++
T Consensus 9 ~~k~~lItGa~~-~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~ 70 (265)
T PRK07097 9 KGKIALITGASY-GIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGI--EAHGYVCDVTD 70 (265)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCC
Confidence 466788777765 5566666544 3346899999999988888877776653 58888899864
No 340
>PRK07062 short chain dehydrogenase; Provisional
Probab=54.95 E-value=84 Score=27.72 Aligned_cols=64 Identities=16% Similarity=0.072 Sum_probs=44.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|..+|=.|++ |+.+..+++.+ ..+..|+.++.++..++.+.+.+....-..++.++..|..+.
T Consensus 7 ~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 71 (265)
T PRK07062 7 EGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDE 71 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCH
Confidence 46778888855 56666676655 334689999999988887776665542222577888888654
No 341
>PRK07576 short chain dehydrogenase; Provisional
Probab=54.89 E-value=86 Score=27.86 Aligned_cols=61 Identities=16% Similarity=0.085 Sum_probs=44.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
++.+||=.|+ +|+.+..+++.+. .+..|++++.++..++...+.+...+. ++.++..|.++
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~ 69 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP--EGLGVSADVRD 69 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC--ceEEEECCCCC
Confidence 5778888874 6677777776553 335899999998888777666665543 56778888864
No 342
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=54.86 E-value=45 Score=31.32 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=37.1
Q ss_pred cCCCCCCEEEEECC--CcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397 106 LNISAGDHVLDLCA--APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160 (313)
Q Consensus 106 l~~~~g~~VLDlca--gpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~ 160 (313)
..+++|++||=.|+ |-|..+.++|+.++ .+|++++.++++.+.+++ .+|.
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~---~lGa 205 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKN---KLGF 205 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH---hcCC
Confidence 45789999988887 35666777888765 579999999988776652 3565
No 343
>PLN02740 Alcohol dehydrogenase-like
Probab=54.73 E-value=39 Score=32.11 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=33.8
Q ss_pred cCCCCCCEEEEECCCcChHHHH---HHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397 106 LNISAGDHVLDLCAAPGAKLCM---ILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160 (313)
Q Consensus 106 l~~~~g~~VLDlcagpG~kt~~---la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~ 160 (313)
..+++|++||=.|+ |+.+.. +|+.++ ...|+++|.++.+++.+++ +|.
T Consensus 194 ~~~~~g~~VlV~G~--G~vG~~a~q~ak~~G-~~~Vi~~~~~~~r~~~a~~----~Ga 244 (381)
T PLN02740 194 ANVQAGSSVAIFGL--GAVGLAVAEGARARG-ASKIIGVDINPEKFEKGKE----MGI 244 (381)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHCC-CCcEEEEcCChHHHHHHHH----cCC
Confidence 56788999998876 555544 455443 1269999999999887753 565
No 344
>PRK06194 hypothetical protein; Provisional
Probab=53.65 E-value=82 Score=28.17 Aligned_cols=61 Identities=13% Similarity=-0.063 Sum_probs=43.2
Q ss_pred CCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+.+||=.| |+|+.+.++++.+. .+..|+.+|.+...++...+.+...+. ++.++.+|..+.
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~d~ 67 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA--EVLGVRTDVSDA 67 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC--eEEEEECCCCCH
Confidence 56788555 55788888887653 345799999998887777666655443 578889998653
No 345
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=53.59 E-value=36 Score=29.86 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=44.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC---CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG---DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~---~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
..+.|++.|..-||.++..|..|- ...+|+++|++-.-++.+... .+ +|.++.++.+...
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p-~i~f~egss~dpa 131 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VP-DILFIEGSSTDPA 131 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CC-CeEEEeCCCCCHH
Confidence 346899999999999999988763 235899999987665544322 33 6999999876544
No 346
>PRK08339 short chain dehydrogenase; Provisional
Probab=53.26 E-value=96 Score=27.58 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=43.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|..+|=.|++ |+.+..+++.+- .+..|+.++.++..++.+.+.++... ..++.++..|..+.
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~ 70 (263)
T PRK08339 7 SGKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKR 70 (263)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCH
Confidence 46677877765 566776766553 34589999999988888777665432 12588888998754
No 347
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=53.17 E-value=50 Score=30.36 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=35.8
Q ss_pred HHHhcCCCCCCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHH
Q 021397 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTL 154 (313)
Q Consensus 102 ~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~ 154 (313)
+-++..++||+.||= -++-||.++.+.+.+.. +.++++.--+.++.+.+++|
T Consensus 138 l~e~y~vkpGhtVlv-haAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken 190 (336)
T KOG1197|consen 138 LFEAYNVKPGHTVLV-HAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN 190 (336)
T ss_pred HHHhcCCCCCCEEEE-EeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc
Confidence 445567899999884 45566676666665432 25788888888888777755
No 348
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=53.13 E-value=1e+02 Score=26.70 Aligned_cols=62 Identities=11% Similarity=0.034 Sum_probs=44.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
++..+|=.|+ +|+.+..+++.+-. +..|+.++.+......+...++..+. ++.++..|....
T Consensus 2 ~~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~ 64 (250)
T TIGR03206 2 KDKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGG--NAQAFACDITDR 64 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCH
Confidence 3567787775 56777777776533 34899999999888877777665543 688889998653
No 349
>PRK12829 short chain dehydrogenase; Provisional
Probab=53.12 E-value=86 Score=27.46 Aligned_cols=64 Identities=25% Similarity=0.127 Sum_probs=44.0
Q ss_pred cCCCCCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 106 LNISAGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 106 l~~~~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+...++.++|=.|++ |+.+.++++.+- .+..|++++.++..++.+.+...+ . ++.++..|....
T Consensus 6 ~~~~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~--~~~~~~~D~~~~ 70 (264)
T PRK12829 6 LKPLDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG--A--KVTATVADVADP 70 (264)
T ss_pred hhccCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc--C--ceEEEEccCCCH
Confidence 344577899988875 777887777653 345799999998877665544322 1 467888887653
No 350
>PRK07454 short chain dehydrogenase; Provisional
Probab=53.05 E-value=1.1e+02 Score=26.34 Aligned_cols=63 Identities=11% Similarity=-0.032 Sum_probs=45.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
.+.++|=.|+ +|+.+..+++.+.. +..|++++.++...+.+.+.++..+. ++.++.+|.+..+
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~ 68 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGV--KAAAYSIDLSNPE 68 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCC--cEEEEEccCCCHH
Confidence 3457787775 68888888876642 34899999999887777766665442 6888899987643
No 351
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=52.75 E-value=33 Score=32.13 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=32.1
Q ss_pred CCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcC---CHHHHHHHHHHHHHcCC
Q 021397 108 ISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDV---ARHRLAACRTLLQKYAL 160 (313)
Q Consensus 108 ~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~---s~~~l~~~~~~~~~~g~ 160 (313)
+++|++||=.|+|+ |..+.++|+.++ ..|++++. ++.+++.++ ++|.
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~----~~Ga 220 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVE----ELGA 220 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHH----HcCC
Confidence 56899999888754 334556666654 47999987 677776554 4565
No 352
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.17 E-value=12 Score=31.93 Aligned_cols=48 Identities=17% Similarity=0.057 Sum_probs=34.5
Q ss_pred CCCEEEEECCCcChH-HHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHc
Q 021397 110 AGDHVLDLCAAPGAK-LCMILDIIGDSGSVTGVDVARHRLAACRTLLQKY 158 (313)
Q Consensus 110 ~g~~VLDlcagpG~k-t~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~ 158 (313)
.|.+||++|.|-=+. ++++|...+ ...|.-.|-++..++..++...++
T Consensus 29 rg~~ilelgggft~laglmia~~a~-~~~v~ltdgne~svrnv~ki~~~n 77 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAP-DSSVWLTDGNEESVRNVEKIRNSN 77 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecC-CceEEEecCCHHHHHHHHHHHhcc
Confidence 377899999885444 445555544 468999999999888877665544
No 353
>PRK05876 short chain dehydrogenase; Provisional
Probab=52.04 E-value=95 Score=27.90 Aligned_cols=62 Identities=13% Similarity=-0.027 Sum_probs=44.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|..+|=.|++ |+.+..+++.+. .+..|+.+|.++..++.+.+.++..+. ++.++..|.++.
T Consensus 5 ~~k~vlVTGas-~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~Dv~d~ 67 (275)
T PRK05876 5 PGRGAVITGGA-SGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF--DVHGVMCDVRHR 67 (275)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEeCCCCCH
Confidence 46678877765 677777777653 335799999999888877766665554 577888898653
No 354
>PRK07890 short chain dehydrogenase; Provisional
Probab=52.02 E-value=1.1e+02 Score=26.75 Aligned_cols=62 Identities=13% Similarity=-0.035 Sum_probs=44.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+.+||=.|+ +|+.+.++++.+- .+..|+.++.++..++.+.+.++..+. ++..+..|..+.
T Consensus 4 ~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~ 66 (258)
T PRK07890 4 KGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR--RALAVPTDITDE 66 (258)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC--ceEEEecCCCCH
Confidence 4567886665 6677777777653 335899999999888877777766553 578889998653
No 355
>PRK07831 short chain dehydrogenase; Provisional
Probab=51.94 E-value=91 Score=27.50 Aligned_cols=64 Identities=25% Similarity=0.153 Sum_probs=43.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHH-cCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQK-YALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~-~g~~~~v~~~~~D~~~~ 174 (313)
.+.++|=.|++..+.+..+++.+. .+..|+.+|.+...++...+.++. ++- .++.++..|....
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 81 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGL-GRVEAVVCDVTSE 81 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCC-ceEEEEEccCCCH
Confidence 467788787753356666666543 235799999999888877776655 443 2578888898653
No 356
>PRK07102 short chain dehydrogenase; Provisional
Probab=51.33 E-value=99 Score=26.84 Aligned_cols=62 Identities=10% Similarity=-0.092 Sum_probs=43.0
Q ss_pred CEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 112 DHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
++|+=.| |+|+.+..+++.+-. +..|++++.++...+...+.+...+- .++.++..|.....
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~ 64 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGA-VAVSTHELDILDTA 64 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChH
Confidence 3567566 567888888776633 34899999999887766655544332 36889999987543
No 357
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=51.27 E-value=87 Score=26.89 Aligned_cols=60 Identities=20% Similarity=0.078 Sum_probs=43.7
Q ss_pred CCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
+.+||=.|+ +|+.+..+++.+. .+..|+.++.++...+.....++..+. ++.++..|...
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~ 65 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGG--EARVLVFDVSD 65 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCC--ceEEEEccCCC
Confidence 467886665 7888888887653 234699999998888776666665553 57888888864
No 358
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=51.16 E-value=1e+02 Score=26.99 Aligned_cols=63 Identities=14% Similarity=-0.028 Sum_probs=44.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
.+.+||=.|++ |+.+..+++.+. .+..|+.++.+...++.+...++..+. ++.++..|.+..+
T Consensus 10 ~~k~vlVtG~s-~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~ 73 (255)
T PRK06113 10 DGKCAIITGAG-AGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQ 73 (255)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHH
Confidence 36789988854 567777766543 335788899998888877777666553 5778888987543
No 359
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=50.89 E-value=55 Score=30.81 Aligned_cols=47 Identities=23% Similarity=0.353 Sum_probs=32.7
Q ss_pred hcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 105 ALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 105 ~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
...+++|++||=.|+|. |..+.++|+..+. ..|+++|.++.+.+.++
T Consensus 181 ~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~-~~v~~~~~~~~k~~~~~ 228 (365)
T cd08278 181 VLKPRPGSSIAVFGAGAVGLAAVMAAKIAGC-TTIIAVDIVDSRLELAK 228 (365)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHH
Confidence 34567899998886543 4445566666652 36999999998887654
No 360
>PRK07109 short chain dehydrogenase; Provisional
Probab=50.88 E-value=1.1e+02 Score=28.61 Aligned_cols=62 Identities=13% Similarity=-0.038 Sum_probs=45.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+..||=.|+ +|+.+..+++.+. .+.+|+.++.++..++.+.+.++..|. ++.++..|..+.
T Consensus 7 ~~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~--~~~~v~~Dv~d~ 69 (334)
T PRK07109 7 GRQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGG--EALAVVADVADA 69 (334)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEecCCCH
Confidence 4567776664 5677777776553 335899999999999888888877664 588888998653
No 361
>PRK09242 tropinone reductase; Provisional
Probab=50.35 E-value=1.2e+02 Score=26.63 Aligned_cols=64 Identities=19% Similarity=-0.028 Sum_probs=44.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|..+|=.|++ |+.+..+++.+. .+..|+.++.+.+.++.+.+.++...-..++.++..|....
T Consensus 8 ~~k~~lItGa~-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~ 72 (257)
T PRK09242 8 DGQTALITGAS-KGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDD 72 (257)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCH
Confidence 46788888774 566666666553 34589999999988888777766542123678888898653
No 362
>PRK06181 short chain dehydrogenase; Provisional
Probab=49.97 E-value=1.1e+02 Score=26.98 Aligned_cols=60 Identities=12% Similarity=-0.052 Sum_probs=41.9
Q ss_pred CEEEEECCCcChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 112 DHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+||=.| |+|+.+..+++.+ ..+..|++++.++...+.+.+.++..+. ++.++..|..+.
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~ 62 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGG--EALVVPTDVSDA 62 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCH
Confidence 3566455 5677888777654 3346899999998887777666665553 688888888653
No 363
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.76 E-value=1.2e+02 Score=26.12 Aligned_cols=61 Identities=15% Similarity=0.124 Sum_probs=44.5
Q ss_pred CCEEEEECCCcChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+.++|=.|+ +|+.+..+++.+ ..+..|+.++.++..++.....++..+. ++.++..|....
T Consensus 7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~ 68 (239)
T PRK07666 7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGV--KVVIATADVSDY 68 (239)
T ss_pred CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC--eEEEEECCCCCH
Confidence 567888885 778888887764 3345899999998887776666655543 688888998653
No 364
>PRK08251 short chain dehydrogenase; Provisional
Probab=49.64 E-value=1.2e+02 Score=26.27 Aligned_cols=63 Identities=11% Similarity=-0.008 Sum_probs=44.3
Q ss_pred CCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+.++|=.| |+|+.+..+++.+.. +..|+.++.++.+++.+...+....-..++.++..|..+.
T Consensus 2 ~k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 65 (248)
T PRK08251 2 RQKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDH 65 (248)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCH
Confidence 34677666 567888888876632 3489999999998887776665442223688888998754
No 365
>PRK06139 short chain dehydrogenase; Provisional
Probab=49.40 E-value=1e+02 Score=28.89 Aligned_cols=61 Identities=11% Similarity=-0.013 Sum_probs=45.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
.+..||=.|+ +|+.+..+++.+. .+..|+.++.++..++.+.+.++..|. ++.++..|..+
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~--~~~~~~~Dv~d 67 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA--EVLVVPTDVTD 67 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCC
Confidence 4567775655 5677777777553 345899999999999988888877764 57778888864
No 366
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=49.38 E-value=14 Score=31.65 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=20.3
Q ss_pred CcChHHHHHHHHhCCC-cEEEEEcCCHHHHHHHH
Q 021397 120 APGAKLCMILDIIGDS-GSVTGVDVARHRLAACR 152 (313)
Q Consensus 120 gpG~kt~~la~~~~~~-~~V~avD~s~~~l~~~~ 152 (313)
|.|..++.+|..+... .+|+++|+++++++.++
T Consensus 7 GlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~ 40 (185)
T PF03721_consen 7 GLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN 40 (185)
T ss_dssp --STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred CCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence 5666665555544333 58999999999988766
No 367
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=49.06 E-value=75 Score=28.17 Aligned_cols=61 Identities=10% Similarity=-0.052 Sum_probs=40.3
Q ss_pred CCCEEEEECCCcC-hHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 110 AGDHVLDLCAAPG-AKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 110 ~g~~VLDlcagpG-~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
.|..+|=.|+++| |.+..+++.+- .+..|+.++.+....+.+++..+..+ .+.++..|..+
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~ 71 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVRE 71 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCC
Confidence 4778999999984 88888887653 23578888888655444444333333 24567788764
No 368
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=48.82 E-value=1.2e+02 Score=26.14 Aligned_cols=60 Identities=22% Similarity=0.106 Sum_probs=42.8
Q ss_pred CCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
+.+||=.|+ +|+.+..+++.+. .+..|++++.++..+......+...+. ++.++.+|...
T Consensus 6 ~~~ilItGa-sg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~ 66 (251)
T PRK12826 6 GRVALVTGA-ARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGG--KARARQVDVRD 66 (251)
T ss_pred CCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCC
Confidence 567886665 5777777776543 335899999998877776666655543 58888888865
No 369
>PRK05866 short chain dehydrogenase; Provisional
Probab=48.80 E-value=1.1e+02 Score=27.92 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=44.0
Q ss_pred CCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+.+||=.|+ +|+.+..+++.+. .+..|++++.+.+.++.+.+.+...+. ++.++..|..+.
T Consensus 40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~--~~~~~~~Dl~d~ 101 (293)
T PRK05866 40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG--DAMAVPCDLSDL 101 (293)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCH
Confidence 456776665 5677888777653 345899999999988888777765553 577888888653
No 370
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=48.75 E-value=1.2e+02 Score=27.05 Aligned_cols=62 Identities=11% Similarity=-0.001 Sum_probs=42.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+..+|=.|++ |+.+..+++.+. .+..|+.++.+...++.+.+.++..+. ++.++..|....
T Consensus 9 ~~k~vlVtGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~ 71 (278)
T PRK08277 9 KGKVAVITGGG-GVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGG--EALAVKADVLDK 71 (278)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCH
Confidence 35677766665 566666766553 345899999998888777766665543 578888888653
No 371
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=48.60 E-value=68 Score=29.50 Aligned_cols=46 Identities=30% Similarity=0.341 Sum_probs=31.3
Q ss_pred cCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 106 LNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 106 l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
+...+|++||-.++|. |..+.++++.++- ..|++++.++.+.+.++
T Consensus 161 ~~~~~~~~VLI~g~g~vG~~~~~lak~~G~-~~v~~~~~s~~~~~~~~ 207 (339)
T cd08232 161 AGDLAGKRVLVTGAGPIGALVVAAARRAGA-AEIVATDLADAPLAVAR 207 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHH
Confidence 3444899999977654 4455666666542 26899999988877543
No 372
>PRK07814 short chain dehydrogenase; Provisional
Probab=48.45 E-value=1.3e+02 Score=26.58 Aligned_cols=62 Identities=11% Similarity=-0.033 Sum_probs=45.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
++.++|=.|+ +|+.+.++++.+ ..+.+|+.++.+++.++.+.+.++..+. ++.++..|.++.
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~ 71 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGR--RAHVVAADLAHP 71 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCH
Confidence 4678888885 677888887755 3345899999999888877777665543 578888888654
No 373
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=48.04 E-value=30 Score=31.32 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=32.6
Q ss_pred HHHhcCCC-CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHH
Q 021397 102 AVSALNIS-AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156 (313)
Q Consensus 102 ~~~~l~~~-~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~ 156 (313)
-+..++.+ ...+||++|+|+|--++.+|...+ ..|+--|+. ..+..++.|.+
T Consensus 77 ~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~-~~~~~L~~~~~ 129 (248)
T KOG2793|consen 77 TATLIGFKTKYINVLELGSGTGLVGILAALLLG--AEVVLTDLP-KVVENLKFNRD 129 (248)
T ss_pred hhccccccccceeEEEecCCccHHHHHHHHHhc--ceeccCCch-hhHHHHHHhhh
Confidence 33444434 456799999999977776666543 567777753 44445555533
No 374
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=48.01 E-value=43 Score=32.22 Aligned_cols=49 Identities=20% Similarity=0.120 Sum_probs=34.3
Q ss_pred cCCCCCCEEEEECC-C-cChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHH
Q 021397 106 LNISAGDHVLDLCA-A-PGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTL 154 (313)
Q Consensus 106 l~~~~g~~VLDlca-g-pG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~ 154 (313)
..+++|++||=+|+ | -|..+.++|+.++ +...|+++|.++.+++.+++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 35678999887763 3 3444556666653 223799999999999988764
No 375
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=47.90 E-value=1.2e+02 Score=26.45 Aligned_cols=61 Identities=16% Similarity=0.083 Sum_probs=45.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
.|.+||=.| |+|+.+..+++.+. .+..|+..+.++..++.+.+.++..|. ++..+..|..+
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~--~~~~~~~D~~~ 70 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL--SAHALAFDVTD 70 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc--eEEEEEccCCC
Confidence 467888777 46788888887653 345899999999888877777766553 57888888865
No 376
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=47.32 E-value=1e+02 Score=27.16 Aligned_cols=61 Identities=11% Similarity=-0.106 Sum_probs=41.3
Q ss_pred EEEEECCCcChHHHHHHHHhC-----CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 113 HVLDLCAAPGAKLCMILDIIG-----DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 113 ~VLDlcagpG~kt~~la~~~~-----~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+|=.|++ ||.+..+++.+. .+..|+.++.++..++.+.+.++......++.++..|..+.
T Consensus 2 ~vlItGas-~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~ 67 (256)
T TIGR01500 2 VCLVTGAS-RGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAE 67 (256)
T ss_pred EEEEecCC-CchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCH
Confidence 35656654 677777766542 24579999999998888877776532222578888898654
No 377
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=47.31 E-value=27 Score=35.30 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=36.1
Q ss_pred CCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 119 AAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 119 agpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
||-|..+..+++.+.. +..++.+|.++++++.+++ .| ..++.+|+++.+
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~g----~~~i~GD~~~~~ 472 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----RG----IRAVLGNAANEE 472 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----CC----CeEEEcCCCCHH
Confidence 5666677778887643 3479999999999887763 23 568999997643
No 378
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=47.21 E-value=62 Score=29.69 Aligned_cols=65 Identities=18% Similarity=0.086 Sum_probs=40.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
.|.+||=.| |+|+.+.++++.+-. +..|+++..+..............+...+++++.+|....+
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~ 69 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEG 69 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCch
Confidence 367888777 578889988876633 34787776665544433322222232236888999987654
No 379
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=46.77 E-value=77 Score=29.13 Aligned_cols=47 Identities=32% Similarity=0.451 Sum_probs=33.7
Q ss_pred HhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 104 SALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 104 ~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
....+++|++||-.|+|. |..+.++|+.++ ..|+++..++++.+.++
T Consensus 153 ~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~ 200 (337)
T cd08261 153 RRAGVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFAR 200 (337)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHH
Confidence 345678899999997543 445666777664 57899988888777664
No 380
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=46.70 E-value=1.1e+02 Score=31.35 Aligned_cols=70 Identities=11% Similarity=-0.001 Sum_probs=48.3
Q ss_pred hcCCCCCCEEEEECCCcChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCC-------CCcEEEEecCCCCCC
Q 021397 105 ALNISAGDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYAL-------GDRCRLFVADGTTFS 175 (313)
Q Consensus 105 ~l~~~~g~~VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~-------~~~v~~~~~D~~~~d 175 (313)
.++.+.|..||=.|+ +|+.+.++++.+ ..+..|++++.+..+++.+.+.+...++ ..++.++.+|..+.+
T Consensus 74 ~~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e 151 (576)
T PLN03209 74 ELDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD 151 (576)
T ss_pred ccccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH
Confidence 345567888887766 588888887765 3345899999999888776665544221 125888999987644
No 381
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=46.04 E-value=1.4e+02 Score=26.11 Aligned_cols=63 Identities=14% Similarity=0.031 Sum_probs=44.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
.+.+|| +-.|+|+.+.++++.+. .+..|+.++.++...+.+.+.++..+. ++.++.+|..+.+
T Consensus 6 ~~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~ 69 (262)
T PRK13394 6 NGKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG--KAIGVAMDVTNED 69 (262)
T ss_pred CCCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc--eEEEEECCCCCHH
Confidence 356777 44556788877777653 335799999999888887777766553 5788899986543
No 382
>PRK07478 short chain dehydrogenase; Provisional
Probab=45.91 E-value=1.5e+02 Score=25.91 Aligned_cols=61 Identities=8% Similarity=-0.051 Sum_probs=43.9
Q ss_pred CCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+..+|=.|++ |+.+..+++.+. .+..|+.++.+++.++.+.+.++..+. ++.++..|....
T Consensus 6 ~k~~lItGas-~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~ 67 (254)
T PRK07478 6 GKVAIITGAS-SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG--EAVALAGDVRDE 67 (254)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCH
Confidence 5677755554 677777776553 335899999999988888777776663 578888888653
No 383
>PRK06720 hypothetical protein; Provisional
Probab=45.84 E-value=1.7e+02 Score=24.46 Aligned_cols=61 Identities=10% Similarity=-0.039 Sum_probs=40.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
.|..+|=.|++. +.+..++..+ ..+..|+.+|.+...++...+.+...+. .+.++..|...
T Consensus 15 ~gk~~lVTGa~~-GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~ 76 (169)
T PRK06720 15 AGKVAIVTGGGI-GIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGG--EALFVSYDMEK 76 (169)
T ss_pred CCCEEEEecCCC-hHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCC
Confidence 466777777764 5555555544 3346899999998877766666655553 46677888754
No 384
>PRK08862 short chain dehydrogenase; Provisional
Probab=45.59 E-value=1.3e+02 Score=26.18 Aligned_cols=61 Identities=10% Similarity=-0.081 Sum_probs=42.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
.|..+|=.|++. +.+..++..+ ..+..|+.++.+++.++.+.+.++..+. ++..+..|...
T Consensus 4 ~~k~~lVtGas~-GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~--~~~~~~~D~~~ 65 (227)
T PRK08862 4 KSSIILITSAGS-VLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTD--NVYSFQLKDFS 65 (227)
T ss_pred CCeEEEEECCcc-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC--CeEEEEccCCC
Confidence 366788777776 4555555544 3446899999999999888777776653 46667777653
No 385
>PRK07791 short chain dehydrogenase; Provisional
Probab=45.59 E-value=1.3e+02 Score=27.12 Aligned_cols=62 Identities=11% Similarity=-0.120 Sum_probs=40.6
Q ss_pred CCCCEEEEECCCcChHHHHHHHHh-CCCcEEEEEcCCH---------HHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVAR---------HRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~---------~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
..|..+|=.|++. +.+..+++.+ ..+..|+.+|.+. ..++.+.+.++..+. ++.++..|..+
T Consensus 4 l~~k~~lITGas~-GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~ 75 (286)
T PRK07791 4 LDGRVVIVTGAGG-GIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG--EAVANGDDIAD 75 (286)
T ss_pred cCCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCC--ceEEEeCCCCC
Confidence 3577888888765 5666666554 2345788888765 556666655655553 57778888865
No 386
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=45.56 E-value=17 Score=35.22 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=16.6
Q ss_pred CCEEEEECCCcChHHHHHHH
Q 021397 111 GDHVLDLCAAPGAKLCMILD 130 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~ 130 (313)
...|+|+|||+|..|+.+..
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs 83 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIID 83 (386)
T ss_pred ceeEEEecCCCCccHHHHHH
Confidence 45899999999999876644
No 387
>PRK07035 short chain dehydrogenase; Provisional
Probab=45.43 E-value=1.5e+02 Score=25.86 Aligned_cols=61 Identities=10% Similarity=-0.022 Sum_probs=42.7
Q ss_pred CCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+..||=.|++ |+.+..+++.+. .+..|+.++.+...++.+.+.+...+. ++.++..|....
T Consensus 8 ~k~vlItGas-~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~ 69 (252)
T PRK07035 8 GKIALVTGAS-RGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGG--KAEALACHIGEM 69 (252)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCH
Confidence 5567766655 566676666553 335899999999888887777766553 577788888654
No 388
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=45.23 E-value=96 Score=28.91 Aligned_cols=63 Identities=13% Similarity=0.159 Sum_probs=46.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
.|+.||=-|+|.|-==....+....+.+++..|++..-.+...+.+++.| ++.....|..+.+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~e 99 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDRE 99 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHH
Confidence 48899999999875433333333334579999999999998888888876 5888888887543
No 389
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=45.13 E-value=72 Score=29.48 Aligned_cols=51 Identities=16% Similarity=0.196 Sum_probs=35.9
Q ss_pred hcCCCCCCEEEEECC--CcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397 105 ALNISAGDHVLDLCA--APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160 (313)
Q Consensus 105 ~l~~~~g~~VLDlca--gpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~ 160 (313)
...+++|++||=.|+ |-|..+.++|+.++ .+|++++.++++.+.+++. +|.
T Consensus 146 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~---lGa 198 (338)
T cd08295 146 VCKPKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNK---LGF 198 (338)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCC
Confidence 346789999997776 34445566777664 4799999998887776642 565
No 390
>PRK07326 short chain dehydrogenase; Provisional
Probab=45.07 E-value=1.4e+02 Score=25.58 Aligned_cols=61 Identities=13% Similarity=-0.033 Sum_probs=43.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+..||=.|+ +|+.+..+++.+.. +..|++++.++..+..+.+.+... .++.++.+|....
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~ 66 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDE 66 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCH
Confidence 3677887774 78888888776532 358999999988877766655433 2578888887643
No 391
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=44.95 E-value=11 Score=34.20 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=29.4
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~ 157 (313)
..|.++||+||||--.-. ++ ...---.|+..|.++.-.+.+++-+++
T Consensus 55 ~~g~~llDiGsGPtiy~~-ls-a~~~f~~I~l~dy~~~N~~el~kWl~~ 101 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQL-LS-ACEWFEEIVLSDYSEQNREELEKWLRK 101 (256)
T ss_dssp S-EEEEEEES-TT--GGG-TT-GGGTEEEEEEEESSHHHHHHHHHHHTT
T ss_pred cCCCEEEEeCCCcHHHhh-hh-HHHhhcceEEeeccHhhHHHHHHHHCC
Confidence 357899999999943322 21 112224799999999888777766544
No 392
>PLN02780 ketoreductase/ oxidoreductase
Probab=44.89 E-value=1.1e+02 Score=28.52 Aligned_cols=62 Identities=11% Similarity=-0.050 Sum_probs=42.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
.|..+|=.|| +||.+.++++.+. .+..|+.++.+++.++.+.+.++...-..++..+..|..
T Consensus 52 ~g~~~lITGA-s~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGP-TDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCC-CcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 3678887775 5677777777653 334799999999999888777765321125666777765
No 393
>PRK05875 short chain dehydrogenase; Provisional
Probab=44.87 E-value=1.5e+02 Score=26.26 Aligned_cols=64 Identities=16% Similarity=-0.041 Sum_probs=44.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
++.+||=.|++ |+.+.++++.+. .+..|++++.++..++...+.+...+...++.++..|..+.
T Consensus 6 ~~k~vlItGas-g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~ 70 (276)
T PRK05875 6 QDRTYLVTGGG-SGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDE 70 (276)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCH
Confidence 36788888754 678888877653 33489999999887776666555443223678888888653
No 394
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=44.77 E-value=21 Score=33.78 Aligned_cols=20 Identities=15% Similarity=0.207 Sum_probs=15.3
Q ss_pred CEEEEECCCcChHHHHHHHH
Q 021397 112 DHVLDLCAAPGAKLCMILDI 131 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~ 131 (313)
-+|+|+||+.|..|+.+.+.
T Consensus 18 ~~iaD~GcS~G~Nsl~~~~~ 37 (334)
T PF03492_consen 18 FRIADLGCSSGPNSLLAVSN 37 (334)
T ss_dssp EEEEEES--SSHHHHHHHHH
T ss_pred eEEEecCCCCCccHHHHHHH
Confidence 58999999999999877654
No 395
>PRK08643 acetoin reductase; Validated
Probab=44.77 E-value=1.5e+02 Score=25.85 Aligned_cols=60 Identities=20% Similarity=-0.022 Sum_probs=43.1
Q ss_pred CEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 112 DHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
..+|=.| |+|+.+.++++.+- .+.+|+.++.++..++.+...+...+. ++.++..|....
T Consensus 3 k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~ 63 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGG--KAIAVKADVSDR 63 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCH
Confidence 4556444 56778887777653 335899999999888888777766553 578888998754
No 396
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=44.24 E-value=29 Score=35.73 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=37.0
Q ss_pred CEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 112 DHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
.+|+=+|+| ..+..+++.+.. +-.++.+|.++++++.+++ .| ..++.+|+++.+
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~ 455 (621)
T PRK03562 401 PRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRMD 455 (621)
T ss_pred CcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCHH
Confidence 456555555 555666665543 3479999999999988864 33 457899987654
No 397
>PRK05854 short chain dehydrogenase; Provisional
Probab=43.82 E-value=1.3e+02 Score=27.69 Aligned_cols=63 Identities=11% Similarity=-0.008 Sum_probs=42.4
Q ss_pred CCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
|..+|=.|+ +||.+..+++.+. .+.+|+.+..+..+.+.+.+.+....-..++.++..|...+
T Consensus 14 gk~~lITGa-s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~ 77 (313)
T PRK05854 14 GKRAVVTGA-SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSL 77 (313)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCH
Confidence 567775555 5677777776553 34588888999888877766665432222578888888654
No 398
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=43.80 E-value=56 Score=30.06 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=31.3
Q ss_pred cCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 106 LNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 106 l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
..+++|++||-.|+|. |..+.++|+.++. ..|++++.++.+.+.++
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~ 209 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAK 209 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHH
Confidence 3467899999976542 4455666776542 37888888887776555
No 399
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=43.65 E-value=84 Score=30.13 Aligned_cols=48 Identities=15% Similarity=0.098 Sum_probs=39.0
Q ss_pred CEEEEECCCcChHHHHHHHHhC-------CCcEEEEEcCCHHHHHHHHHHHHHcC
Q 021397 112 DHVLDLCAAPGAKLCMILDIIG-------DSGSVTGVDVARHRLAACRTLLQKYA 159 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~-------~~~~V~avD~s~~~l~~~~~~~~~~g 159 (313)
-.++++|+|.|..+.-+...+. +..++.-+|+|++..+.=+++++...
T Consensus 79 ~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 79 LKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred ceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc
Confidence 4799999999999988877652 24689999999998888777777654
No 400
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=43.51 E-value=1.1e+02 Score=27.47 Aligned_cols=46 Identities=20% Similarity=0.094 Sum_probs=31.2
Q ss_pred hcCCCCCCEEEEECCCcChHHH---HHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397 105 ALNISAGDHVLDLCAAPGAKLC---MILDIIGDSGSVTGVDVARHRLAACRT 153 (313)
Q Consensus 105 ~l~~~~g~~VLDlcagpG~kt~---~la~~~~~~~~V~avD~s~~~l~~~~~ 153 (313)
.+...+|++||=.|+| +.+. ++|+.++ ...|+++|.++.+++.+++
T Consensus 115 ~~~~~~g~~VlV~G~G--~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 115 AAGDLKGRRVLVVGAG--MLGLTAAAAAAAAG-AARVVAADPSPDRRELALS 163 (280)
T ss_pred hccCCCCCEEEEECCC--HHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHH
Confidence 3456789999988764 4444 4555543 2348999999998876654
No 401
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=43.20 E-value=89 Score=28.62 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=35.6
Q ss_pred hcCCCCCCEEEEECC--CcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397 105 ALNISAGDHVLDLCA--APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160 (313)
Q Consensus 105 ~l~~~~g~~VLDlca--gpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~ 160 (313)
...+++|++||=.|+ |-|..+.++|+..+ .+|++++.++++.+.++ .+|.
T Consensus 133 ~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~----~lGa 184 (325)
T TIGR02825 133 ICGVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLK----KLGF 184 (325)
T ss_pred HhCCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH----HcCC
Confidence 346789999987775 34555666777654 47999999998877664 3565
No 402
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=43.18 E-value=1.6e+02 Score=25.19 Aligned_cols=60 Identities=15% Similarity=0.139 Sum_probs=43.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
.+.+||=.|++ |+.+..+++.+. .+..|++++.++..++.+.+.+...+ ++.++..|...
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~ 64 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSS 64 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCC
Confidence 36788888885 778888877653 33589999999988776655544332 57788888764
No 403
>PRK07774 short chain dehydrogenase; Provisional
Probab=43.17 E-value=1.6e+02 Score=25.42 Aligned_cols=62 Identities=10% Similarity=-0.021 Sum_probs=42.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+.+||=.| |+|+.+.++++.+. .+..|+.++.++..++.+...++..+. ++..+..|.+..
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~ 67 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGG--TAIAVQVDVSDP 67 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCH
Confidence 456777555 66788888887653 335899999998777666665554432 567788887643
No 404
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=42.95 E-value=34 Score=35.05 Aligned_cols=49 Identities=14% Similarity=0.165 Sum_probs=35.6
Q ss_pred CCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 119 AAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 119 agpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
||-|..+..+++.+.. +..++++|.++++++.+++ .| ..++.+|+++.+
T Consensus 406 ~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~~ 455 (601)
T PRK03659 406 VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----YG----YKVYYGDATQLE 455 (601)
T ss_pred ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----CC----CeEEEeeCCCHH
Confidence 5666677777776533 3579999999999987763 34 457899997643
No 405
>PRK09291 short chain dehydrogenase; Provisional
Probab=42.86 E-value=1.4e+02 Score=25.91 Aligned_cols=60 Identities=15% Similarity=-0.043 Sum_probs=42.3
Q ss_pred CEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 112 DHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+||=.|+ +|+.+..+++.+. .+..|++++.++...+.+.+.....+. ++.++..|....
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~ 63 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDA 63 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCH
Confidence 46776665 6777887776653 345899999988877777766666554 578888887653
No 406
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=42.51 E-value=86 Score=28.53 Aligned_cols=51 Identities=24% Similarity=0.238 Sum_probs=35.7
Q ss_pred HhcCCCCCCEEEEECC--CcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397 104 SALNISAGDHVLDLCA--APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160 (313)
Q Consensus 104 ~~l~~~~g~~VLDlca--gpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~ 160 (313)
....+++|++||=.|+ +-|..+.++|+.++ ..|++++.++++.+.+++ +|.
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~----~Ga 189 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE----LGF 189 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCC
Confidence 3456789999987764 34445566777664 479999999988777653 565
No 407
>PRK05650 short chain dehydrogenase; Provisional
Probab=41.88 E-value=1.7e+02 Score=25.91 Aligned_cols=58 Identities=14% Similarity=-0.096 Sum_probs=41.2
Q ss_pred EEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 113 HVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 113 ~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
+||=.| |+|+.+..+++.+. .+..|+.++.+...++.+...++..+. ++.++..|...
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~ 60 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGG--DGFYQRCDVRD 60 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCC
Confidence 456555 46777777776653 335899999999888877777766553 57888888865
No 408
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=41.86 E-value=96 Score=29.10 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=33.8
Q ss_pred hcCCCCCCEEEEECCCcChHHH---HHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397 105 ALNISAGDHVLDLCAAPGAKLC---MILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160 (313)
Q Consensus 105 ~l~~~~g~~VLDlcagpG~kt~---~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~ 160 (313)
...+++|++||=.|+ |+.+. ++|+.++ ...|+++|.++++++.++ ++|.
T Consensus 182 ~~~~~~g~~VlV~G~--g~vG~~a~q~ak~~G-~~~vi~~~~~~~~~~~~~----~~Ga 233 (369)
T cd08301 182 VAKVKKGSTVAIFGL--GAVGLAVAEGARIRG-ASRIIGVDLNPSKFEQAK----KFGV 233 (369)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCC
Confidence 356788999988865 55554 4455543 237999999999887764 4565
No 409
>PRK06125 short chain dehydrogenase; Provisional
Probab=41.81 E-value=1.8e+02 Score=25.42 Aligned_cols=62 Identities=16% Similarity=0.024 Sum_probs=43.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
.+.++|=.|+ +|+.+..+++.+. .+..|++++.++..++.+.+.++...- .++.++..|.+.
T Consensus 6 ~~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~ 68 (259)
T PRK06125 6 AGKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHG-VDVAVHALDLSS 68 (259)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcC-CceEEEEecCCC
Confidence 3667777775 5667777776553 235899999999888877776665432 257788888864
No 410
>PLN02827 Alcohol dehydrogenase-like
Probab=41.71 E-value=93 Score=29.56 Aligned_cols=48 Identities=17% Similarity=0.321 Sum_probs=33.0
Q ss_pred cCCCCCCEEEEECCCcChHHHH---HHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397 106 LNISAGDHVLDLCAAPGAKLCM---ILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160 (313)
Q Consensus 106 l~~~~g~~VLDlcagpG~kt~~---la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~ 160 (313)
..+++|++||=.|+ |+.+.. +|+.++ ...|+++|.++.+.+.++ .+|.
T Consensus 189 ~~~~~g~~VlV~G~--G~vG~~~iqlak~~G-~~~vi~~~~~~~~~~~a~----~lGa 239 (378)
T PLN02827 189 ADVSKGSSVVIFGL--GTVGLSVAQGAKLRG-ASQIIGVDINPEKAEKAK----TFGV 239 (378)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEECCCHHHHHHHH----HcCC
Confidence 45788999998875 555544 455543 236899999998887664 4565
No 411
>PRK08589 short chain dehydrogenase; Validated
Probab=41.44 E-value=1.6e+02 Score=26.26 Aligned_cols=61 Identities=10% Similarity=0.022 Sum_probs=41.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|.++|=.|++ |+.+..+++.+. .+..|+.++.+ ..++.+.+.++..+. ++.++..|....
T Consensus 5 ~~k~vlItGas-~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~--~~~~~~~Dl~~~ 66 (272)
T PRK08589 5 ENKVAVITGAS-TGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGG--KAKAYHVDISDE 66 (272)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCC--eEEEEEeecCCH
Confidence 45677766654 566777776553 34689999998 666666666655543 578888888653
No 412
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=41.21 E-value=97 Score=28.63 Aligned_cols=49 Identities=24% Similarity=0.364 Sum_probs=33.0
Q ss_pred HhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397 104 SALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRT 153 (313)
Q Consensus 104 ~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~ 153 (313)
....+++|++||=.|+|. |..+.++|+.++. ..|++++.++.+.+.+++
T Consensus 156 ~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~-~~v~~~~~~~~~~~~~~~ 205 (343)
T cd05285 156 RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGA-TKVVVTDIDPSRLEFAKE 205 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHH
Confidence 456678899998876543 4445566666542 238999988888766643
No 413
>PRK08703 short chain dehydrogenase; Provisional
Probab=40.92 E-value=1.7e+02 Score=25.18 Aligned_cols=61 Identities=10% Similarity=-0.061 Sum_probs=42.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
++.+||=.|+ +|+.+..+++.+. .+..|+.++.++..++.+.+.+...+-. .+.++..|..
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~D~~ 66 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHP-EPFAIRFDLM 66 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCC-CcceEEeeec
Confidence 4678888885 6777777776653 3458999999998888777776655432 3556666654
No 414
>PRK12939 short chain dehydrogenase; Provisional
Probab=40.80 E-value=2e+02 Score=24.81 Aligned_cols=62 Identities=16% Similarity=0.052 Sum_probs=44.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
++.+||=.| |.|+.+.++++.+.. +..|++++.++..+....+.++..+. ++.++..|..+.
T Consensus 6 ~~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~ 68 (250)
T PRK12939 6 AGKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGG--RAHAIAADLADP 68 (250)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCH
Confidence 467787445 578888888876632 35799999998888777766655543 688899998653
No 415
>PLN02540 methylenetetrahydrofolate reductase
Probab=40.67 E-value=71 Score=32.57 Aligned_cols=60 Identities=8% Similarity=0.066 Sum_probs=48.8
Q ss_pred CEEEEECCCcCh----HHHHHHHHhCCC------cEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 112 DHVLDLCAAPGA----KLCMILDIIGDS------GSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 112 ~~VLDlcagpG~----kt~~la~~~~~~------~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
-..+|+--|.|| +|+.++..+.+. .+++|.|.+...++..-..+..+|+. ||-.+.||..
T Consensus 29 P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIr-NILALrGDpp 98 (565)
T PLN02540 29 PLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQ-NILALRGDPP 98 (565)
T ss_pred CCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCC-EEEEECCCCC
Confidence 357888888887 577777766433 47999999999999988889999996 7999999964
No 416
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=40.41 E-value=2e+02 Score=24.84 Aligned_cols=60 Identities=22% Similarity=0.070 Sum_probs=44.2
Q ss_pred CCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
+.+||=.| |+|+.+.++++.+. .+..|++++.++..++.....++..+. ++.++.+|...
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~ 64 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGG--KAIGVAMDVTD 64 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCC
Confidence 45677444 46888888888654 334899999999888877776666553 68888899864
No 417
>PRK06141 ornithine cyclodeaminase; Validated
Probab=39.64 E-value=1.8e+02 Score=27.09 Aligned_cols=63 Identities=17% Similarity=0.059 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHH-hCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397 98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDI-IGDSGSVTGVDVARHRLAACRTLLQKYAL 160 (313)
Q Consensus 98 ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~-~~~~~~V~avD~s~~~l~~~~~~~~~~g~ 160 (313)
.|.+++..|......+|+=+|||.=+.....+-. ..+..+|+..+.++++.+...+.+++.+.
T Consensus 112 ~sala~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~ 175 (314)
T PRK06141 112 ASALAASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGF 175 (314)
T ss_pred HHHHHHHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCC
Confidence 3566777787777889999998776665543222 23345799999999998888877766553
No 418
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=39.53 E-value=2.3e+02 Score=26.00 Aligned_cols=64 Identities=14% Similarity=0.055 Sum_probs=47.5
Q ss_pred CCCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHc-CCCCcEEEEecCCCCCC
Q 021397 109 SAGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKY-ALGDRCRLFVADGTTFS 175 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~-g~~~~v~~~~~D~~~~d 175 (313)
..+.++|=-||. +|.+..+|+.+. ++..|+-+-.+.++|+.+.+.++.. ++ .+.++..|....+
T Consensus 4 ~~~~~~lITGAS-sGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v--~v~vi~~DLs~~~ 69 (265)
T COG0300 4 MKGKTALITGAS-SGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGV--EVEVIPADLSDPE 69 (265)
T ss_pred CCCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCc--eEEEEECcCCChh
Confidence 456677766665 566777776654 3458999999999999999888754 44 6889999987643
No 419
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=38.87 E-value=1.3e+02 Score=26.74 Aligned_cols=63 Identities=14% Similarity=0.089 Sum_probs=39.4
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 110 AGDHVLDLCAAP-GAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 110 ~g~~VLDlcagp-G~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
.|..+|=.|+++ +|.+..+++.+. .+.+|+.++.+....+.+++..+... ..++.++..|..+
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d 70 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE-GQESLLLPCDVTS 70 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC-CCceEEEecCCCC
Confidence 467899999884 889888888764 33478777654322222333323332 1357788889864
No 420
>PRK08303 short chain dehydrogenase; Provisional
Probab=38.67 E-value=1.7e+02 Score=26.97 Aligned_cols=62 Identities=15% Similarity=-0.014 Sum_probs=41.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCC----------HHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVA----------RHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s----------~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|..+|=.|++. |.+..+++.+. .+..|+.++.+ ++.++.+.+.++..+. ++.++..|..+.
T Consensus 7 ~~k~~lITGgs~-GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~ 79 (305)
T PRK08303 7 RGKVALVAGATR-GAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGG--RGIAVQVDHLVP 79 (305)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCC--ceEEEEcCCCCH
Confidence 467888888654 57777777653 33578888876 3456666666665553 577888898653
No 421
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=38.57 E-value=1.3e+02 Score=27.46 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=31.5
Q ss_pred cCCCCCCEEEEECCC-cChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 106 LNISAGDHVLDLCAA-PGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 106 l~~~~g~~VLDlcag-pG~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
..+.+|++||-.|+| -|..+..+++.++ ..|++++.++.+.+.++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELAR 203 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH
Confidence 456788999998765 3444445555544 47999999998876663
No 422
>PRK07806 short chain dehydrogenase; Provisional
Probab=38.57 E-value=2.2e+02 Score=24.59 Aligned_cols=62 Identities=15% Similarity=-0.017 Sum_probs=40.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCH-HHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVAR-HRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~-~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+.++|=.|+ +|+.+.++++.+. .+..|++++.+. ..++.+...++..+. ++.++.+|.++.
T Consensus 5 ~~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~ 68 (248)
T PRK07806 5 PGKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGG--RASAVGADLTDE 68 (248)
T ss_pred CCcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCC--ceEEEEcCCCCH
Confidence 3567887775 5677777777653 334788887764 455555555555443 578888898654
No 423
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=38.30 E-value=9.6 Score=38.19 Aligned_cols=28 Identities=7% Similarity=-0.048 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhhhhccccCcceeEeecC
Q 021397 213 RAVKARENAASKAIVRSEHPELIFYGRR 240 (313)
Q Consensus 213 ~~~q~~~l~~~~~~~r~~~~El~~~~k~ 240 (313)
-..+.++...++..+||..+|=|++||.
T Consensus 416 y~Cfq~v~l~KP~tSRPANSERYivCKg 443 (845)
T KOG3673|consen 416 YVCFQSVSLHKPHTSRPANSERYIVCKG 443 (845)
T ss_pred HHHHHHhhcccCCCCCCCCCceeEEecc
Confidence 4455556677888889988888888774
No 424
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.30 E-value=2e+02 Score=24.83 Aligned_cols=59 Identities=14% Similarity=0.026 Sum_probs=40.6
Q ss_pred CCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
+.+||=.|+ +|+.+.++++.+- .+..|++++.++..++.+...++. + .++.++.+|...
T Consensus 5 ~~~vlItGa-sg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~D~~~ 64 (251)
T PRK07231 5 GKVAIVTGA-SSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G--GRAIAVAADVSD 64 (251)
T ss_pred CcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C--CeEEEEECCCCC
Confidence 456666655 4677777776543 335899999999887776665544 3 357888888864
No 425
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=38.16 E-value=1.6e+02 Score=25.79 Aligned_cols=57 Identities=14% Similarity=0.043 Sum_probs=40.5
Q ss_pred EEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 113 HVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 113 ~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
+||=.|++ |+.+..+++.+. .+..|+.++.++..++.+.+.++..+ ++.++..|..+
T Consensus 2 ~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d 59 (259)
T PRK08340 2 NVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG---EVYAVKADLSD 59 (259)
T ss_pred eEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCC
Confidence 46666755 667777776653 34689999999988888777765543 47788888764
No 426
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=37.51 E-value=2.2e+02 Score=24.77 Aligned_cols=63 Identities=11% Similarity=-0.006 Sum_probs=42.2
Q ss_pred CCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+..||=.|+ +|+.+.++++.+. .+..|+.+|.+...++...+.++...-..++.++..|.++.
T Consensus 2 ~k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 65 (259)
T PRK12384 2 NQVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSE 65 (259)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCH
Confidence 356777775 5777777776653 33589999999887776665554322112588888998653
No 427
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=37.30 E-value=2.2e+02 Score=24.56 Aligned_cols=59 Identities=17% Similarity=0.004 Sum_probs=41.9
Q ss_pred EEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 113 HVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 113 ~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+||=.| |+|+.+..+++.+- .+..|++++.++...+.+...++..+. ++.++..|....
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~ 62 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGG--SVIYLVADVTKE 62 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--ceEEEECCCCCH
Confidence 455455 56788888887653 335899999998888777766655543 688888888653
No 428
>PRK09072 short chain dehydrogenase; Provisional
Probab=36.95 E-value=2.2e+02 Score=24.96 Aligned_cols=61 Identities=25% Similarity=0.204 Sum_probs=41.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
++.+||=.|++ |+.+..+++.+ ..+..|++++.+++.++.+...+ ..+ .++.++..|..+.
T Consensus 4 ~~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~--~~~~~~~~D~~d~ 65 (263)
T PRK09072 4 KDKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYP--GRHRWVVADLTSE 65 (263)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcC--CceEEEEccCCCH
Confidence 35567766655 67777776654 23458999999998887776555 233 3688888888653
No 429
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=36.67 E-value=1.2e+02 Score=27.78 Aligned_cols=48 Identities=31% Similarity=0.434 Sum_probs=32.3
Q ss_pred HhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 104 SALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 104 ~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
....+++|++||-.|+|. |..+.++|+.++- ..|++++.++.+.+.++
T Consensus 153 ~~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~-~~v~~~~~~~~~~~~l~ 201 (343)
T cd08236 153 RLAGITLGDTVVVIGAGTIGLLAIQWLKILGA-KRVIAVDIDDEKLAVAR 201 (343)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHH
Confidence 355677899999997544 4455666666542 24899988887766553
No 430
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=36.57 E-value=1.3e+02 Score=27.82 Aligned_cols=51 Identities=24% Similarity=0.348 Sum_probs=34.1
Q ss_pred hcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397 105 ALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160 (313)
Q Consensus 105 ~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~ 160 (313)
....++|++||=.|+|+ |..+.++|+.++. ..|+++|.++++.+.++ .+|.
T Consensus 161 ~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~----~~g~ 212 (351)
T cd08285 161 LANIKLGDTVAVFGIGPVGLMAVAGARLRGA-GRIIAVGSRPNRVELAK----EYGA 212 (351)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHH----HcCC
Confidence 34567899998886542 2334556666542 46999999998876665 3565
No 431
>PRK07340 ornithine cyclodeaminase; Validated
Probab=36.28 E-value=2.2e+02 Score=26.32 Aligned_cols=62 Identities=13% Similarity=-0.130 Sum_probs=44.6
Q ss_pred HHHHHHhcCCCCCCEEEEECCCcChHHHHHHHH-hCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397 99 SGAAVSALNISAGDHVLDLCAAPGAKLCMILDI-IGDSGSVTGVDVARHRLAACRTLLQKYAL 160 (313)
Q Consensus 99 s~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~-~~~~~~V~avD~s~~~l~~~~~~~~~~g~ 160 (313)
|.+++..|......+|+=+|||.=+.+...+-. ..+..+|...+.++++.+...+.++..++
T Consensus 113 sala~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~ 175 (304)
T PRK07340 113 SLLAARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGP 175 (304)
T ss_pred HHHHHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCC
Confidence 566777787777889999999877665544332 23335799999999998888877765443
No 432
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=36.21 E-value=1.3e+02 Score=27.39 Aligned_cols=48 Identities=31% Similarity=0.470 Sum_probs=30.8
Q ss_pred HhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 104 SALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 104 ~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
....+++|++||-.|+|. |..+.++|+..+- ..|++++.++++.+.++
T Consensus 153 ~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~ 201 (334)
T cd08234 153 DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGA-SRVTVAEPNEEKLELAK 201 (334)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHH
Confidence 345678899999996431 3334445554431 23899999988877654
No 433
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=35.96 E-value=80 Score=30.63 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=40.4
Q ss_pred CEEEEECCCcChHHHHHHHHhC-C-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 112 DHVLDLCAAPGAKLCMILDIIG-D-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~-~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
++||=+|| |+.+..+|..+. + .+.|+..|.|...++++..... .+++....|+...
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~ 59 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADV 59 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccCh
Confidence 46788898 777777776642 2 2699999999998888765531 1578888887654
No 434
>PRK09186 flagellin modification protein A; Provisional
Probab=35.82 E-value=2.4e+02 Score=24.39 Aligned_cols=63 Identities=22% Similarity=0.156 Sum_probs=42.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHc-CCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKY-ALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~-g~~~~v~~~~~D~~~~ 174 (313)
.+.+||=.|+ +|+.+.++++.+. .+..|+.++.+++.++.+.+.+... +- ..+.++.+|..+.
T Consensus 3 ~~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~~Dl~d~ 67 (256)
T PRK09186 3 KGKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKS-KKLSLVELDITDQ 67 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCC-CceeEEEecCCCH
Confidence 3567776666 5678888887663 3358999999988887776666432 32 2466778888653
No 435
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=35.51 E-value=2.6e+02 Score=24.34 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=44.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+..+|=.| |+|+.+..+++.+.. +..|+..+.++..++.+.+.++..+. ++.++..|..+.
T Consensus 8 ~~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~ 70 (254)
T PRK08085 8 AGKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI--KAHAAPFNVTHK 70 (254)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC--eEEEEecCCCCH
Confidence 466777777 456788877776643 35899999998888877777665553 577788888654
No 436
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=35.38 E-value=1.3e+02 Score=28.17 Aligned_cols=44 Identities=23% Similarity=0.368 Sum_probs=31.0
Q ss_pred cCCCCCCEEEEECCCcChHH---HHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 106 LNISAGDHVLDLCAAPGAKL---CMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 106 l~~~~g~~VLDlcagpG~kt---~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
..+++|++||=.|+ |+.+ .++|+.++ ...|+++|.++.+++.++
T Consensus 180 ~~~~~g~~vlV~G~--g~vG~~~~~~a~~~G-~~~Vi~~~~~~~~~~~~~ 226 (365)
T cd08277 180 AKVEPGSTVAVFGL--GAVGLSAIMGAKIAG-ASRIIGVDINEDKFEKAK 226 (365)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH
Confidence 45788999988765 4554 44555554 137999999999887764
No 437
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=34.51 E-value=2.1e+02 Score=22.90 Aligned_cols=57 Identities=11% Similarity=-0.038 Sum_probs=40.2
Q ss_pred EEEECCCcChHHHHHHHHhCC--CcEEEEEcCC--HHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 114 VLDLCAAPGAKLCMILDIIGD--SGSVTGVDVA--RHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 114 VLDlcagpG~kt~~la~~~~~--~~~V~avD~s--~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
||=.|++ |+.+..+++.+-. ...|+.+..+ ...++.+.+.++..+. ++.++..|...
T Consensus 3 ~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~--~~~~~~~D~~~ 63 (167)
T PF00106_consen 3 VLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGA--KITFIECDLSD 63 (167)
T ss_dssp EEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTS--EEEEEESETTS
T ss_pred EEEECCC-CHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccc--ccccccccccc
Confidence 3444544 6777777765522 3478888888 7888888777777773 79999999864
No 438
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.19 E-value=1.6e+02 Score=27.18 Aligned_cols=65 Identities=18% Similarity=0.097 Sum_probs=46.7
Q ss_pred CCCEEEEECCCcChHHHHHHH-HhCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILD-IIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~-~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
.|..||=-||.+|- +.++|. +...+.+++-+-....+++...+.+++.+-.+++.++..|..+.+
T Consensus 11 ~~kvVvITGASsGI-G~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~ 76 (282)
T KOG1205|consen 11 AGKVVLITGASSGI-GEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEE 76 (282)
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHH
Confidence 47788888988864 344443 444445677777889999999777777775435899999987644
No 439
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.87 E-value=2.5e+02 Score=24.26 Aligned_cols=62 Identities=10% Similarity=0.020 Sum_probs=40.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCc-EEEE-EcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSG-SVTG-VDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~-~V~a-vD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
++.+||=.|+ +|+.+.++++.+...| .|+. .+.+....+.+.+.++..+. ++.++..|....
T Consensus 3 ~~~~vlItGa-~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~ 66 (250)
T PRK08063 3 SGKVALVTGS-SRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGR--KALAVKANVGDV 66 (250)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCH
Confidence 3567776665 5788888887664333 6665 46667777666666665553 578888898653
No 440
>PRK06197 short chain dehydrogenase; Provisional
Probab=33.53 E-value=2.9e+02 Score=25.02 Aligned_cols=64 Identities=13% Similarity=-0.032 Sum_probs=43.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|..||=.| |+|+.+.++++.+.. +..|+.++.+....+.+.+.+....-..++.++..|....
T Consensus 15 ~~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~ 79 (306)
T PRK06197 15 SGRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSL 79 (306)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCH
Confidence 466788555 467888888876533 3488899998888776666555432123578888898654
No 441
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=33.37 E-value=2.9e+02 Score=23.16 Aligned_cols=39 Identities=10% Similarity=0.075 Sum_probs=19.9
Q ss_pred CcChHHHHHHHHhCCCcEEEE--EcCCHHHHHH---HHHHHHHc
Q 021397 120 APGAKLCMILDIIGDSGSVTG--VDVARHRLAA---CRTLLQKY 158 (313)
Q Consensus 120 gpG~kt~~la~~~~~~~~V~a--vD~s~~~l~~---~~~~~~~~ 158 (313)
|--++|..+++..+....|+| .|......+. +.+|++.+
T Consensus 6 GdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L 49 (166)
T PF10354_consen 6 GDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEEL 49 (166)
T ss_pred cchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHH
Confidence 444556677777653345544 5554444333 23555544
No 442
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=33.32 E-value=83 Score=30.51 Aligned_cols=55 Identities=16% Similarity=0.137 Sum_probs=38.8
Q ss_pred CCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
..+|+=+|+ |..+..+++.+.. +..|+.+|.++++++.+++.. . .+.++.+|+..
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----~-~~~~i~gd~~~ 286 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----P-NTLVLHGDGTD 286 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----C-CCeEEECCCCC
Confidence 456766665 6677777776643 458999999999988776542 1 36678888864
No 443
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=33.02 E-value=30 Score=27.29 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=25.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHH
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRL 148 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l 148 (313)
+.....|+|||.|-..-.|.+. + -.=.|+|....+.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-G--y~G~GiD~R~Rk~ 93 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-G--YPGWGIDARRRKS 93 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-C--CCccccccccccc
Confidence 4557999999999887655542 2 3457888766554
No 444
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=32.86 E-value=55 Score=31.61 Aligned_cols=34 Identities=18% Similarity=0.109 Sum_probs=25.2
Q ss_pred CcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397 120 APGAKLCMILDIIGDSGSVTGVDVARHRLAACRT 153 (313)
Q Consensus 120 gpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~ 153 (313)
|.|..++.+|..+..+..|+++|+++++++.+++
T Consensus 7 GlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 7 GTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred CCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 5666666666554433579999999999998875
No 445
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=32.83 E-value=2.1e+02 Score=26.31 Aligned_cols=46 Identities=30% Similarity=0.416 Sum_probs=31.7
Q ss_pred HhcCCCCCCEEEEECCCcChHHH---HHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 104 SALNISAGDHVLDLCAAPGAKLC---MILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 104 ~~l~~~~g~~VLDlcagpG~kt~---~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
..+.+++|++||=.|+ |+.+. ++++.++. ..|+++|.++++++.++
T Consensus 157 ~~~~~~~g~~vlV~G~--G~vG~~~~~~ak~~G~-~~vi~~~~~~~~~~~~~ 205 (339)
T cd08239 157 RRVGVSGRDTVLVVGA--GPVGLGALMLARALGA-EDVIGVDPSPERLELAK 205 (339)
T ss_pred HhcCCCCCCEEEEECC--CHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHH
Confidence 3456788999988865 45544 45555542 24999999999887664
No 446
>PRK06198 short chain dehydrogenase; Provisional
Probab=32.65 E-value=3e+02 Score=23.95 Aligned_cols=62 Identities=11% Similarity=0.014 Sum_probs=41.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcE-EEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGS-VTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~-V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+.+||=.|+ +|+.+..+++.+. .+.. |+.++.++..+......+...+. ++.++..|..+.
T Consensus 5 ~~k~vlItGa-~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~ 68 (260)
T PRK06198 5 DGKVALVTGG-TQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGA--KAVFVQADLSDV 68 (260)
T ss_pred CCcEEEEeCC-CchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCC--eEEEEEccCCCH
Confidence 4667886664 6678888877653 2345 99999988777655555544442 577788888653
No 447
>PRK06123 short chain dehydrogenase; Provisional
Probab=31.95 E-value=2.7e+02 Score=23.93 Aligned_cols=59 Identities=12% Similarity=-0.023 Sum_probs=37.4
Q ss_pred CEEEEECCCcChHHHHHHHHhCCCc-EEEEEc-CCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 112 DHVLDLCAAPGAKLCMILDIIGDSG-SVTGVD-VARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~~~~-~V~avD-~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
..+|=.|+ +|+.+..+++.+...| .|+..+ .++...+.+...++..+. ++.++..|...
T Consensus 3 ~~~lVtG~-~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~ 63 (248)
T PRK06123 3 KVMIITGA-SRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGG--EALAVAADVAD 63 (248)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCC--cEEEEEeccCC
Confidence 46777774 6788888877664434 666655 345555555555555553 57778888865
No 448
>PRK05855 short chain dehydrogenase; Validated
Probab=31.94 E-value=2.4e+02 Score=27.84 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=45.7
Q ss_pred CCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
+.++|=.|+ +|+.+.++++.+. .+..|+.++.+...++.+.+.++..|. ++.++..|.++.+
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~ 377 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDAD 377 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHH
Confidence 456775655 6778887777663 335799999999888888777776664 5888899987543
No 449
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=31.86 E-value=53 Score=31.89 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=22.0
Q ss_pred CcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHH
Q 021397 120 APGAKLCMILDIIGD-SGSVTGVDVARHRLAACR 152 (313)
Q Consensus 120 gpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~ 152 (313)
|+|+.++..+-.+.. +..|+|+|+++++++.++
T Consensus 7 GtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln 40 (414)
T COG1004 7 GTGYVGLVTGACLAELGHEVVCVDIDESKVELLN 40 (414)
T ss_pred CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHh
Confidence 566665543333221 257999999999998765
No 450
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=31.55 E-value=1.4e+02 Score=27.04 Aligned_cols=64 Identities=17% Similarity=0.085 Sum_probs=38.4
Q ss_pred CCEEEEECCCcChHHHHHHHHhCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIGDS-GSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~~~-~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
+.+||=.|+ +|..+.++++.+-.. ..|++++.+..............+...+++++.+|....+
T Consensus 4 ~~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~ 68 (322)
T PLN02662 4 GKVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEG 68 (322)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcc
Confidence 456765554 789999988876433 4788887765443322222111122236888999986543
No 451
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=31.42 E-value=3.1e+02 Score=23.67 Aligned_cols=58 Identities=10% Similarity=-0.031 Sum_probs=40.6
Q ss_pred EEEECCCcChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 114 VLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 114 VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+|=.| |+|+.+..+++.+ ..+..|+.++.+...++.+.+.+...+. ++.++..|....
T Consensus 3 ~lItG-~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~ 61 (254)
T TIGR02415 3 ALVTG-GAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGG--KAVAYKLDVSDK 61 (254)
T ss_pred EEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCH
Confidence 44445 4677888777665 2335899999998888777766666654 688888998653
No 452
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=31.38 E-value=2.6e+02 Score=24.49 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=40.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
++..+|=.|+ +|+.+..+++.+. .+..|+.++.++..++.+.+. .+ .++.++..|..+.
T Consensus 5 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~D~~~~ 64 (263)
T PRK06200 5 HGQVALITGG-GSGIGRALVERFLAEGARVAVLERSAEKLASLRQR---FG--DHVLVVEGDVTSY 64 (263)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC--CcceEEEccCCCH
Confidence 4667887876 4567777776653 335899999998877665543 23 2577888888653
No 453
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=30.62 E-value=20 Score=34.18 Aligned_cols=23 Identities=30% Similarity=0.696 Sum_probs=18.5
Q ss_pred cccceeeccccccCCCccccccc
Q 021397 264 GYDKVLVDAECTHDGSIKHIQKF 286 (313)
Q Consensus 264 ~~~~~l~d~e~~~~~~~~~~~~~ 286 (313)
.||++|+|+.||-.|.++..|..
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~ 251 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDV 251 (355)
T ss_pred cCcEEEECCCCCCCcccccCccc
Confidence 47999999999988887655544
No 454
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=30.61 E-value=2.5e+02 Score=25.96 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=46.1
Q ss_pred CCCCCEEEEECCCc-ChH--HHHHHHHh----C---CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCC
Q 021397 108 ISAGDHVLDLCAAP-GAK--LCMILDII----G---DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGT 172 (313)
Q Consensus 108 ~~~g~~VLDlcagp-G~k--t~~la~~~----~---~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~ 172 (313)
..|+-.-+..++|+ |+. |..++..+ + .-.+++|+|.+...+...-+.+...|+. ++-.+.||.-
T Consensus 44 ~~p~~~svt~~d~~~~~~~~t~~~~~~~~~~~~~~~~i~Hltc~d~n~~~i~~~l~~~~~~Gi~-~ilaLrGDpp 117 (291)
T COG0685 44 LGPGFDSVTIPDGSRGTPRRTSVAAAALLKRTGGIEPIPHLTCRDRNRIEIISILKGAAALGIR-NILALRGDPP 117 (291)
T ss_pred hCCceEEEEecCCCCCCCcccHHHHHHHHHhcCCCccceeecccCCCHHHHHHHHHHHHHhCCc-eEEEecCCCC
Confidence 45666667778888 443 22222221 1 1247999999999999999999999996 7999999973
No 455
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=30.48 E-value=2.7e+02 Score=25.44 Aligned_cols=62 Identities=13% Similarity=-0.049 Sum_probs=42.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+.+||=.|+ +|+.+.++++.+. .+..|+.++.+...++.+.+.+...+ .++.++..|..+.
T Consensus 5 ~~k~vlVTGa-s~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~ 67 (322)
T PRK07453 5 AKGTVIITGA-SSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPP--DSYTIIHIDLGDL 67 (322)
T ss_pred CCCEEEEEcC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccC--CceEEEEecCCCH
Confidence 3567776665 5778888777653 33589999999888776665553222 2578888888654
No 456
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.16 E-value=3.2e+02 Score=23.96 Aligned_cols=64 Identities=8% Similarity=-0.066 Sum_probs=41.2
Q ss_pred CCCCEEEEECCCc-ChHHHHHHHHhCC-CcEEEEEcCC-----------HHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 109 SAGDHVLDLCAAP-GAKLCMILDIIGD-SGSVTGVDVA-----------RHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 109 ~~g~~VLDlcagp-G~kt~~la~~~~~-~~~V~avD~s-----------~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
-+|.+||=.|++. |+.+..+++.+.. +..|+..+.+ ......+.+.+++.|. ++.++..|..+.
T Consensus 4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~ 80 (256)
T PRK12859 4 LKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGV--KVSSMELDLTQN 80 (256)
T ss_pred cCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCC--eEEEEEcCCCCH
Confidence 3577899899874 6888888776532 3467665422 2334445566666664 688888888653
No 457
>PRK07024 short chain dehydrogenase; Provisional
Probab=30.03 E-value=2.3e+02 Score=24.80 Aligned_cols=59 Identities=19% Similarity=0.054 Sum_probs=39.9
Q ss_pred CEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 112 DHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 112 ~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+||=.|+ +|+.+..+++.+.. +..|+.+|.+++.++.+.+.+...+ ++.++..|.++.
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~ 62 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA---RVSVYAADVRDA 62 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC---eeEEEEcCCCCH
Confidence 45555554 67888888776643 3489999999888776655443222 578888998653
No 458
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=29.98 E-value=1.8e+02 Score=26.68 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=34.2
Q ss_pred CCCCC--CEEEEECC--CcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397 107 NISAG--DHVLDLCA--APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160 (313)
Q Consensus 107 ~~~~g--~~VLDlca--gpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~ 160 (313)
.+++| ++||=.|+ |-|..+.++|+.++. .+|++++.++++.+.+++. +|.
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~-~~Vi~~~~s~~~~~~~~~~---lGa 202 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGC-SRVVGICGSDEKCQLLKSE---LGF 202 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHh---cCC
Confidence 46666 88887776 345556667776641 2799999999887776642 565
No 459
>PRK08265 short chain dehydrogenase; Provisional
Probab=29.92 E-value=2.9e+02 Score=24.27 Aligned_cols=59 Identities=19% Similarity=0.118 Sum_probs=39.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+.++|=.|+ +|+.+..+++.+. .+..|+.+|.++..++.+.+. .+ .++.++..|..+.
T Consensus 5 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~---~~--~~~~~~~~Dl~~~ 64 (261)
T PRK08265 5 AGKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAAS---LG--ERARFIATDITDD 64 (261)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---hC--CeeEEEEecCCCH
Confidence 3567777774 5677777776653 335899999998766555433 23 2578888898653
No 460
>PRK06138 short chain dehydrogenase; Provisional
Probab=29.91 E-value=3.4e+02 Score=23.33 Aligned_cols=61 Identities=10% Similarity=-0.020 Sum_probs=42.1
Q ss_pred CCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
+.++|=.|| +|+.+.++++.+- .+.+|+.++.+...++...+.+. .+ .++.++..|..+.+
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~--~~~~~~~~D~~~~~ 66 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AG--GRAFARQGDVGSAE 66 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cC--CeEEEEEcCCCCHH
Confidence 556776666 5778887777543 33589999998877766665554 33 36888899987543
No 461
>PRK06701 short chain dehydrogenase; Provisional
Probab=29.82 E-value=3e+02 Score=24.82 Aligned_cols=62 Identities=11% Similarity=0.119 Sum_probs=40.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCH-HHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVAR-HRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~-~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|.+||=.|+ +|+.+..+++.+. .+..|+.++.+. ..++.....++..+. ++.++..|..+.
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~ 108 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGV--KCLLIPGDVSDE 108 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC--eEEEEEccCCCH
Confidence 4678888875 5667777776553 345788888774 345555555555453 578888998653
No 462
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=29.80 E-value=1.8e+02 Score=26.70 Aligned_cols=44 Identities=20% Similarity=0.143 Sum_probs=36.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHH
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~ 156 (313)
..-+||=-|||-|..+..+|.+ +-.+.|+|.|--|+-..+-.+.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~---G~~~~gnE~S~~Mll~s~fiLn 99 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL---GYAVQGNEFSYFMLLASNFILN 99 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc---cceEEEEEchHHHHHHHHHHHc
Confidence 4568999999999999999986 3589999999999866555443
No 463
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=29.75 E-value=95 Score=28.34 Aligned_cols=42 Identities=19% Similarity=0.080 Sum_probs=26.4
Q ss_pred EEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHH
Q 021397 113 HVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQ 156 (313)
Q Consensus 113 ~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~ 156 (313)
+|.=+|+|. .+..++..+. .+..|+.+|.++..++.+++.++
T Consensus 5 ~I~ViGaG~--mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 5 VIGVVGSGV--MGQGIAQVFARTGYDVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred EEEEECccH--HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 455556655 4443443332 23489999999999987766544
No 464
>PRK08267 short chain dehydrogenase; Provisional
Probab=29.61 E-value=2.5e+02 Score=24.53 Aligned_cols=58 Identities=19% Similarity=0.018 Sum_probs=39.6
Q ss_pred EEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 113 HVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 113 ~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
++|=.|++ |+.+..+++.+. .+..|+.++.++..++.+.+.+. + .++.++..|..+.+
T Consensus 3 ~vlItGas-g~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~--~~~~~~~~D~~~~~ 61 (260)
T PRK08267 3 SIFITGAA-SGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A--GNAWTGALDVTDRA 61 (260)
T ss_pred EEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C--CceEEEEecCCCHH
Confidence 46656654 677777777553 33489999999888777665443 2 36888899987543
No 465
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=29.57 E-value=2.1e+02 Score=26.97 Aligned_cols=48 Identities=25% Similarity=0.274 Sum_probs=30.1
Q ss_pred HhcCCCCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 104 SALNISAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 104 ~~l~~~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
.....++|++||=.|+|+ |..+.++++..+ ...|+++|.++.+.+.++
T Consensus 170 ~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G-~~~vi~~~~~~~~~~~~~ 218 (375)
T cd08282 170 ELAGVQPGDTVAVFGAGPVGLMAAYSAILRG-ASRVYVVDHVPERLDLAE 218 (375)
T ss_pred HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH
Confidence 344567899888765532 233344455443 126889999998877665
No 466
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=29.55 E-value=3.1e+02 Score=23.94 Aligned_cols=60 Identities=12% Similarity=0.049 Sum_probs=38.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|.++|=.|+ +|+.+..+++.+ ..+..|+.++.+.. +.+.+.++..+. ++.++..|..+.
T Consensus 7 ~~k~~lItGa-s~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~--~~~~~~~Dl~~~ 67 (251)
T PRK12481 7 NGKVAIITGC-NTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALGR--KFHFITADLIQQ 67 (251)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcCC--eEEEEEeCCCCH
Confidence 4778887776 567777777655 33457888876542 334444555543 688888998653
No 467
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.87 E-value=2.8e+02 Score=24.19 Aligned_cols=62 Identities=10% Similarity=0.047 Sum_probs=40.5
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHhCC-CcEEEEEcCC------------HHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAP-GAKLCMILDIIGD-SGSVTGVDVA------------RHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagp-G~kt~~la~~~~~-~~~V~avD~s------------~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+..||=.|++. |+.+..+++.+.. +..|+.++.+ +.... +...++..+. ++.++..|..+.
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~D~~~~ 79 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIESYGV--RCEHMEIDLSQP 79 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHhcCC--eEEEEECCCCCH
Confidence 356788888775 7888888877633 3478888876 22222 3344444443 688889998653
No 468
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=28.78 E-value=1.2e+02 Score=26.75 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=33.0
Q ss_pred CcChHHHHHHHHhCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 120 APGAKLCMILDIIGDS-GSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 120 gpG~kt~~la~~~~~~-~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
|-|-.+..+|+.+... ..|+.+|.++.+++..... .. .+..+++|++.
T Consensus 7 G~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~--~~----~~~~v~gd~t~ 55 (225)
T COG0569 7 GAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLAD--EL----DTHVVIGDATD 55 (225)
T ss_pred CCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh--hc----ceEEEEecCCC
Confidence 4455777788776544 4799999999998763321 11 36788888864
No 469
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=28.37 E-value=1.1e+02 Score=28.09 Aligned_cols=43 Identities=12% Similarity=0.000 Sum_probs=28.3
Q ss_pred CCCCEEEEECCCc-ChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 109 SAGDHVLDLCAAP-GAKLCMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 109 ~~g~~VLDlcagp-G~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
.++++||=+|||+ |..+.++|+.++. ..|+++|.++.+++.+.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~ 186 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGG-SPPAVWETNPRRRDGAT 186 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHhhh
Confidence 4577888777643 3334556666542 35778899998877655
No 470
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=28.35 E-value=1.8e+02 Score=24.55 Aligned_cols=43 Identities=19% Similarity=0.049 Sum_probs=28.6
Q ss_pred EEEECCCcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHH
Q 021397 114 VLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157 (313)
Q Consensus 114 VLDlcagpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~ 157 (313)
|-=+|+|+=|.++...-... +..|+-+|.+++.++.+++.+++
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECChHHHHhhhhHHHH
Confidence 33467776666554444333 46899999999999988877765
No 471
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=28.20 E-value=2.1e+02 Score=27.40 Aligned_cols=64 Identities=17% Similarity=0.238 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCCCCCEEEEECCCcChHHHHHHHHhC------CCcEEEEEcC----CHHHHHHHHHHHH----HcCC
Q 021397 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIG------DSGSVTGVDV----ARHRLAACRTLLQ----KYAL 160 (313)
Q Consensus 97 ~ss~~~~~~l~~~~g~~VLDlcagpG~kt~~la~~~~------~~~~V~avD~----s~~~l~~~~~~~~----~~g~ 160 (313)
.+-+.+.+++.-.+.-.|+|++.|.|.-=..+.+.+. +.-+|||++. +...++.+.+++. .+|+
T Consensus 97 taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv 174 (374)
T PF03514_consen 97 TANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV 174 (374)
T ss_pred chhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc
Confidence 3445666666655556899999999875333333221 2347999999 8888887776664 4466
No 472
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=27.61 E-value=82 Score=30.82 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=27.0
Q ss_pred CcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 120 APGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 120 gpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
|.|..+..+|..+.....|+++|+++.+++.++
T Consensus 13 GlGyvGlpmA~~la~~~~V~g~D~~~~~ve~l~ 45 (425)
T PRK15182 13 GLGYVGLPLAVEFGKSRQVVGFDVNKKRILELK 45 (425)
T ss_pred CcCcchHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 677777777776655578999999999998877
No 473
>PRK05717 oxidoreductase; Validated
Probab=27.43 E-value=3.4e+02 Score=23.62 Aligned_cols=59 Identities=15% Similarity=0.027 Sum_probs=40.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|.+||=.|+ +|+.+.++++.+. .+.+|+.+|.++...+.+.+ ..+ .++.++..|.++.
T Consensus 9 ~~k~vlItG~-sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~---~~~--~~~~~~~~Dl~~~ 68 (255)
T PRK05717 9 NGRVALVTGA-ARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAK---ALG--ENAWFIAMDVADE 68 (255)
T ss_pred CCCEEEEeCC-cchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH---HcC--CceEEEEccCCCH
Confidence 3667887766 4778888877664 33589999998776554432 233 2577889998753
No 474
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=27.34 E-value=3.7e+02 Score=23.45 Aligned_cols=61 Identities=10% Similarity=-0.016 Sum_probs=40.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|.+||=.|++ |+.+..+++.+- .+..|+.++.+ ...+.+.+.+...+- ++.++..|....
T Consensus 14 ~~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~D~~~~ 75 (258)
T PRK06935 14 DGKVAIVTGGN-TGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGR--KVTFVQVDLTKP 75 (258)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCC--ceEEEEcCCCCH
Confidence 46788878775 566777776653 33578888877 555566666655552 588888998653
No 475
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=27.34 E-value=3.8e+02 Score=23.32 Aligned_cols=61 Identities=20% Similarity=0.050 Sum_probs=39.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.+..+|=.|++ |+.+.++++.+. .+..|+.+|.++. ...+.+.+...+. ++.++..|....
T Consensus 7 ~~k~vlVtGas-~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~--~~~~~~~D~~~~ 68 (260)
T PRK12823 7 AGKVVVVTGAA-QGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAAGG--EALALTADLETY 68 (260)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhcCC--eEEEEEEeCCCH
Confidence 35677777754 677777776553 3358999998864 3344444444443 577888888653
No 476
>PRK08628 short chain dehydrogenase; Provisional
Probab=27.06 E-value=3.6e+02 Score=23.37 Aligned_cols=61 Identities=10% Similarity=-0.086 Sum_probs=40.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|..+|=.|+ +|+.+..+++.+. .+..|+.++.++... .+.+.++..+. ++.++..|..+.
T Consensus 6 ~~~~ilItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~--~~~~~~~D~~~~ 67 (258)
T PRK08628 6 KDKVVIVTGG-ASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQP--RAEFVQVDLTDD 67 (258)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCC--ceEEEEccCCCH
Confidence 3567776665 5678777776653 334788888888776 34444454553 588888998653
No 477
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=26.69 E-value=1.6e+02 Score=25.32 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=31.4
Q ss_pred EEECCCcChHHHHHHHHhC-----CCcEEEEEcCCHHHHHHHHHHH----HHcCC
Q 021397 115 LDLCAAPGAKLCMILDIIG-----DSGSVTGVDVARHRLAACRTLL----QKYAL 160 (313)
Q Consensus 115 LDlcagpG~kt~~la~~~~-----~~~~V~avD~s~~~l~~~~~~~----~~~g~ 160 (313)
-=+|+|+-.++..+...+. +..+|+-.|++++|++...+.+ ++.+.
T Consensus 3 ~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~ 57 (183)
T PF02056_consen 3 TIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGA 57 (183)
T ss_dssp EEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTT
T ss_pred EEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 3478999888877665431 2358999999999998765544 44455
No 478
>PRK07069 short chain dehydrogenase; Validated
Probab=26.63 E-value=1.9e+02 Score=24.91 Aligned_cols=54 Identities=19% Similarity=0.025 Sum_probs=34.1
Q ss_pred CcChHHHHHHHHhC-CCcEEEEEcCC-HHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 120 APGAKLCMILDIIG-DSGSVTGVDVA-RHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 120 gpG~kt~~la~~~~-~~~~V~avD~s-~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
|+|+.+.++++.+. .+.+|+.++.+ .+.++.+.+.+........+.++..|..+
T Consensus 7 ~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 62 (251)
T PRK07069 7 AAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTD 62 (251)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCC
Confidence 45777777777653 33589999987 67777766665544322234456677754
No 479
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=26.60 E-value=1.3e+02 Score=29.19 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=34.2
Q ss_pred CcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 120 APGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 120 gpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
|.|..+..+++.+.. +..|+.+|.++..++.+++. . .+.++.+|+..
T Consensus 7 G~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~---~----~~~~~~gd~~~ 54 (453)
T PRK09496 7 GAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR---L----DVRTVVGNGSS 54 (453)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh---c----CEEEEEeCCCC
Confidence 458899989887643 35899999999988776642 2 35677788754
No 480
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.50 E-value=4.1e+02 Score=24.13 Aligned_cols=61 Identities=13% Similarity=-0.045 Sum_probs=38.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCC-HHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVA-RHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s-~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
.|..+|=.|++ |+.+..+++.+- .+..|+.+|.+ ...++.+.+.++..|. ++.++..|..+
T Consensus 11 ~~k~~lVTGas-~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dv~d 73 (306)
T PRK07792 11 SGKVAVVTGAA-AGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGA--KAVAVAGDISQ 73 (306)
T ss_pred CCCEEEEECCC-ChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCC--eEEEEeCCCCC
Confidence 35677755555 566777766553 34578888874 3455555555555553 67788888865
No 481
>PRK07201 short chain dehydrogenase; Provisional
Probab=26.41 E-value=3.1e+02 Score=27.91 Aligned_cols=61 Identities=15% Similarity=-0.023 Sum_probs=44.1
Q ss_pred CCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 111 GDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 111 g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
|..+|=.|+ +|+.+..+++.+. .+..|++++.++..++.+.+.++..+. ++.++..|..+.
T Consensus 371 ~k~vlItGa-s~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~ 432 (657)
T PRK07201 371 GKVVLITGA-SSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGG--TAHAYTCDLTDS 432 (657)
T ss_pred CCEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEecCCCH
Confidence 456775554 5678888877653 345899999999988887777666553 688888998653
No 482
>PRK06114 short chain dehydrogenase; Provisional
Probab=26.28 E-value=4.1e+02 Score=23.06 Aligned_cols=62 Identities=18% Similarity=0.042 Sum_probs=41.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCH-HHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVAR-HRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~-~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|..+|=.| |+|+.+..+++.+.. +..|+.++.+. ..++.+.+.++..+. ++.++..|..+.
T Consensus 7 ~~k~~lVtG-~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~ 70 (254)
T PRK06114 7 DGQVAFVTG-AGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGR--RAIQIAADVTSK 70 (254)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC--ceEEEEcCCCCH
Confidence 356777666 566788888876543 35888898865 345555556655553 577888888653
No 483
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=26.23 E-value=2.4e+02 Score=28.41 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=32.5
Q ss_pred CCCCEEEEECCCcChHH-HHHHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397 109 SAGDHVLDLCAAPGAKL-CMILDIIGDSGSVTGVDVARHRLAACRT 153 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt-~~la~~~~~~~~V~avD~s~~~l~~~~~ 153 (313)
.++.+|+=+|+|+=|.. ..++..++ ..|+++|.++.+++.+++
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH
Confidence 46789999999886554 44566654 469999999998776663
No 484
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=26.02 E-value=2.1e+02 Score=26.46 Aligned_cols=61 Identities=8% Similarity=0.031 Sum_probs=39.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHhCCC---cEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIGDS---GSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~~~---~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
.|.+||=.|+ +|+.+.++++.+-.. ..|+++|.+......+.+. ... .++.++.+|..+.+
T Consensus 3 ~~k~vLVTGa-tG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~---~~~-~~~~~v~~Dl~d~~ 66 (324)
T TIGR03589 3 NNKSILITGG-TGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQK---FPA-PCLRFFIGDVRDKE 66 (324)
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHH---hCC-CcEEEEEccCCCHH
Confidence 3667886665 689999888876322 4789998876554333322 221 25888999987543
No 485
>PRK07041 short chain dehydrogenase; Provisional
Probab=26.01 E-value=2.1e+02 Score=24.40 Aligned_cols=52 Identities=21% Similarity=0.109 Sum_probs=35.7
Q ss_pred CcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 120 APGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 120 gpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
|+|+.+..+++.+- .+..|+.++.++..++...+.++. + .++.++..|....
T Consensus 5 as~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~Dl~~~ 57 (230)
T PRK07041 5 GSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG-G--APVRTAALDITDE 57 (230)
T ss_pred CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C--CceEEEEccCCCH
Confidence 56777777776653 335899999998877766555432 3 2578888888653
No 486
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.84 E-value=2.9e+02 Score=24.35 Aligned_cols=62 Identities=11% Similarity=0.020 Sum_probs=38.3
Q ss_pred CCCEEEEECC-CcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCA-APGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlca-gpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|..+|=.|+ |++|.+..+++.+. .+..|+..+.+....+.+++..+..+ ....+..|..+.
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~ 68 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELD---SELVFRCDVASD 68 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccC---CceEEECCCCCH
Confidence 4678888887 57888888888764 33477777665433333444333333 234678888653
No 487
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=25.56 E-value=2.8e+02 Score=24.56 Aligned_cols=46 Identities=24% Similarity=0.359 Sum_probs=31.6
Q ss_pred hcCCCCCCEEEEECC--CcChHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Q 021397 105 ALNISAGDHVLDLCA--APGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152 (313)
Q Consensus 105 ~l~~~~g~~VLDlca--gpG~kt~~la~~~~~~~~V~avD~s~~~l~~~~ 152 (313)
...+.+|+.||-.|| +-|..+..+++..+ ..|++++.++.+.+.++
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~ 181 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALG--ARVIAAASSEEKLALAR 181 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhC--CEEEEEeCCHHHHHHHH
Confidence 345678999999987 23334455555544 46999999988776653
No 488
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=25.46 E-value=21 Score=35.45 Aligned_cols=24 Identities=25% Similarity=0.653 Sum_probs=19.3
Q ss_pred hcccceeeccccccCCCccccccc
Q 021397 263 SGYDKVLVDAECTHDGSIKHIQKF 286 (313)
Q Consensus 263 ~~~~~~l~d~e~~~~~~~~~~~~~ 286 (313)
..||++|+|+.||-.|.+++.|..
T Consensus 182 ~~fD~ILvDaPCSG~G~~rk~p~~ 205 (470)
T PRK11933 182 ETFDAILLDAPCSGEGTVRKDPDA 205 (470)
T ss_pred hhcCeEEEcCCCCCCcccccCHHH
Confidence 358999999999998888765543
No 489
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.36 E-value=3.4e+02 Score=24.21 Aligned_cols=62 Identities=10% Similarity=-0.024 Sum_probs=39.6
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAP-GAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagp-G~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|..+|=.|++. +|.+..+|+.+. .+..|+.++.+....+.+++..+..|. ...+..|..+.
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~---~~~~~~Dv~d~ 69 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGS---DFVLPCDVEDI 69 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCC---ceEEeCCCCCH
Confidence 467899999886 477777777663 335788888776544444444344442 24577888653
No 490
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.13 E-value=1e+02 Score=32.21 Aligned_cols=151 Identities=11% Similarity=0.097 Sum_probs=78.7
Q ss_pred cCCCCCCEEEEECCCcChHHHHHHHHh----CCCcE--EEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC-----C
Q 021397 106 LNISAGDHVLDLCAAPGAKLCMILDII----GDSGS--VTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT-----F 174 (313)
Q Consensus 106 l~~~~g~~VLDlcagpG~kt~~la~~~----~~~~~--V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~-----~ 174 (313)
+.++||+.|-=+|..-||||+.++-+. +..|+ +.++|++.--...+++++.--+- .-.+..+..++ .
T Consensus 489 fti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~Q--EPvLFs~sI~eNI~YG~ 566 (716)
T KOG0058|consen 489 FTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQ--EPVLFSGSIRENIAYGL 566 (716)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeec--cceeecccHHHHHhcCC
Confidence 467899999999999999998654332 23444 56788777666666654432221 11222222211 1
Q ss_pred Ccccccccc---CcccccccccccccccccccccchhHHHHHHHHHHHHHhhhhhccccCcceeEeecCCcEEEEEcCCC
Q 021397 175 SLAPLRLLL---DPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEHPELIFYGRRSGIVGLTKEEI 251 (313)
Q Consensus 175 d~v~~D~~l---~~~s~sg~l~~~p~~~~~w~~~~~~~~~~~~~q~~~l~~~~~~~r~~~~El~~~~k~gG~lvysTcs~ 251 (313)
+.+..+... ..+.|...+...|+-+.-=-++++..+..-|.|+-. .|-.++|. .-+|..-.-|.
T Consensus 567 ~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIA--IARALlr~-----------P~VLILDEATS 633 (716)
T KOG0058|consen 567 DNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIA--IARALLRN-----------PRVLILDEATS 633 (716)
T ss_pred CCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHH--HHHHHhcC-----------CCEEEEechhh
Confidence 110000000 112344455555654322223333344445555543 33345554 44555544442
Q ss_pred CCcccchhhhhhcccceeec
Q 021397 252 YQSVCNSEVSSSGYDKVLVD 271 (313)
Q Consensus 252 ~~p~Ene~vv~~~~~~~l~d 271 (313)
=-..|+|..|.+.+++...+
T Consensus 634 ALDaeSE~lVq~aL~~~~~~ 653 (716)
T KOG0058|consen 634 ALDAESEYLVQEALDRLMQG 653 (716)
T ss_pred hcchhhHHHHHHHHHHhhcC
Confidence 34679999998888765444
No 491
>PRK05872 short chain dehydrogenase; Provisional
Probab=24.93 E-value=3.3e+02 Score=24.59 Aligned_cols=61 Identities=28% Similarity=0.180 Sum_probs=40.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|.+||=.|++ |+.+..+++.+. .+.+|+.++.++..++.+.+.+. ....+..+..|..+.
T Consensus 8 ~gk~vlItGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~---~~~~~~~~~~Dv~d~ 69 (296)
T PRK05872 8 AGKVVVVTGAA-RGIGAELARRLHARGAKLALVDLEEAELAALAAELG---GDDRVLTVVADVTDL 69 (296)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---CCCcEEEEEecCCCH
Confidence 47788877754 677777777653 33589999999988776655442 122455666887653
No 492
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=24.84 E-value=1.8e+02 Score=27.08 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=36.7
Q ss_pred CCcChHHHHHHHHhCC--CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEE----EEecCCCC
Q 021397 119 AAPGAKLCMILDIIGD--SGSVTGVDVARHRLAACRTLLQKYALGDRCR----LFVADGTT 173 (313)
Q Consensus 119 agpG~kt~~la~~~~~--~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~----~~~~D~~~ 173 (313)
-|.|+.+..+++.+-. ...|+.+|.++..+..+++.++...-..++. .+.+|.++
T Consensus 5 Ga~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd 65 (293)
T PF02719_consen 5 GAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRD 65 (293)
T ss_dssp TTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCH
T ss_pred ccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccC
Confidence 4678999988887632 2579999999999999998885432222343 45888853
No 493
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=24.28 E-value=4.7e+02 Score=24.62 Aligned_cols=62 Identities=16% Similarity=0.064 Sum_probs=39.7
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHh-CCCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCC
Q 021397 108 ISAGDHVLDLCAAPGAKLCMILDII-GDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTT 173 (313)
Q Consensus 108 ~~~g~~VLDlcagpG~kt~~la~~~-~~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~ 173 (313)
+..+.+|+=.|+| |..+.||++.+ ..+..|+|+|.-..-. ++|+...-...+++++..|...
T Consensus 24 p~~~lrI~itGga-GFIgSHLvdkLm~egh~VIa~Dn~ftg~---k~n~~~~~~~~~fel~~hdv~~ 86 (350)
T KOG1429|consen 24 PSQNLRILITGGA-GFIGSHLVDKLMTEGHEVIALDNYFTGR---KENLEHWIGHPNFELIRHDVVE 86 (350)
T ss_pred CCCCcEEEEecCc-chHHHHHHHHHHhcCCeEEEEecccccc---hhhcchhccCcceeEEEeechh
Confidence 4455788866654 78899998865 3345899999754322 3344333223478888888754
No 494
>PLN00015 protochlorophyllide reductase
Probab=24.15 E-value=1.5e+02 Score=27.06 Aligned_cols=54 Identities=7% Similarity=-0.082 Sum_probs=34.0
Q ss_pred CCcChHHHHHHHHhCCC--cEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 119 AAPGAKLCMILDIIGDS--GSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 119 agpG~kt~~la~~~~~~--~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
-|++|.+..+++.+... ..|+..+.+...++.+.+.+...+ .++.++..|....
T Consensus 4 Gas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~ 59 (308)
T PLN00015 4 GASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPK--DSYTVMHLDLASL 59 (308)
T ss_pred CCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCC--CeEEEEEecCCCH
Confidence 45677788777765433 378888888777665554443222 2567777787653
No 495
>PRK06101 short chain dehydrogenase; Provisional
Probab=23.90 E-value=2.2e+02 Score=24.68 Aligned_cols=56 Identities=14% Similarity=-0.016 Sum_probs=37.3
Q ss_pred EEEEECCCcChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 113 HVLDLCAAPGAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 113 ~VLDlcagpG~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
.+| +--|+|+.+..+++.+.. +..|++++.++.+++.+.+. + .++.++.+|..+.+
T Consensus 3 ~vl-ItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~----~--~~~~~~~~D~~~~~ 59 (240)
T PRK06101 3 AVL-ITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ----S--ANIFTLAFDVTDHP 59 (240)
T ss_pred EEE-EEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----c--CCCeEEEeeCCCHH
Confidence 344 334578888888877643 35799999998876654432 2 25778888886543
No 496
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.67 E-value=4e+02 Score=23.84 Aligned_cols=62 Identities=10% Similarity=-0.031 Sum_probs=39.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHhCC-CcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAP-GAKLCMILDIIGD-SGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagp-G~kt~~la~~~~~-~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
.|..+|=.|++. +|.+..+++.+.. +..|+.++.+....+.+++..+..+- . .++..|.++.
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~--~-~~~~~Dv~d~ 67 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGS--D-YVYELDVSKP 67 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC--c-eEEEecCCCH
Confidence 367888888874 6888888876533 35788888885433334443344442 3 4677888654
No 497
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=23.40 E-value=1.8e+02 Score=28.49 Aligned_cols=43 Identities=19% Similarity=0.041 Sum_probs=31.9
Q ss_pred CCCCEEEEECCCcChHHHH-HHHHhCCCcEEEEEcCCHHHHHHHHH
Q 021397 109 SAGDHVLDLCAAPGAKLCM-ILDIIGDSGSVTGVDVARHRLAACRT 153 (313)
Q Consensus 109 ~~g~~VLDlcagpG~kt~~-la~~~~~~~~V~avD~s~~~l~~~~~ 153 (313)
.+|++|+=+|+|+=|.... .++.++ ..|+.+|+++.+++.+++
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHh
Confidence 4799999999998555443 444443 479999999999876653
No 498
>PRK08324 short chain dehydrogenase; Validated
Probab=23.17 E-value=3.6e+02 Score=28.02 Aligned_cols=61 Identities=21% Similarity=0.088 Sum_probs=42.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCC
Q 021397 110 AGDHVLDLCAAPGAKLCMILDIIG-DSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTF 174 (313)
Q Consensus 110 ~g~~VLDlcagpG~kt~~la~~~~-~~~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~ 174 (313)
+|+.||=.|+ +|+.+..+++.+. .+..|+++|.++..++.+.+.+... .++.++..|....
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~ 482 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDE 482 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCH
Confidence 5678886665 5677777776553 2358999999998887766554332 2578888887653
No 499
>PLN00198 anthocyanidin reductase; Provisional
Probab=23.10 E-value=2.7e+02 Score=25.55 Aligned_cols=68 Identities=12% Similarity=0.047 Sum_probs=39.5
Q ss_pred cCCCCCCEEEEECCCcChHHHHHHHHhCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCcEEEEecCCCCCC
Q 021397 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDS-GSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFS 175 (313)
Q Consensus 106 l~~~~g~~VLDlcagpG~kt~~la~~~~~~-~~V~avD~s~~~l~~~~~~~~~~g~~~~v~~~~~D~~~~d 175 (313)
|.|..+.+||=.|+ +|..+.++++.+-.. .+|+++..+......... +....-..+++++.+|.+..+
T Consensus 4 ~~~~~~~~vlItG~-~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~ 72 (338)
T PLN00198 4 LTPTGKKTACVIGG-TGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRALQELGDLKIFGADLTDEE 72 (338)
T ss_pred ccCCCCCeEEEECC-chHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhcCCCCceEEEEcCCCChH
Confidence 34556777876554 589999998876433 478777666543322221 111111125788899987543
No 500
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=23.02 E-value=3.1e+02 Score=25.61 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=33.3
Q ss_pred cCCCCCCEEEEECCCcChHHH---HHHHHhCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q 021397 106 LNISAGDHVLDLCAAPGAKLC---MILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160 (313)
Q Consensus 106 l~~~~g~~VLDlcagpG~kt~---~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~ 160 (313)
..+++|++||=.|+ |+.+. ++|+.++ ...|+++|.++.+++.++ .+|.
T Consensus 182 ~~~~~g~~VlV~G~--G~vG~~a~~~ak~~G-~~~vi~~~~~~~~~~~~~----~lGa 232 (368)
T cd08300 182 AKVEPGSTVAVFGL--GAVGLAVIQGAKAAG-ASRIIGIDINPDKFELAK----KFGA 232 (368)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCeEEEEeCCHHHHHHHH----HcCC
Confidence 45788999988875 44444 4555544 236999999999987664 3565
Done!