RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021397
(313 letters)
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 83.8 bits (208), Expect = 1e-18
Identities = 44/199 (22%), Positives = 76/199 (38%), Gaps = 21/199 (10%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIR---LKTGNEADLEEIEAELKCKLEKVVWL- 69
E + + PR R LK + DL + + + ++V W
Sbjct: 28 WGERAIRIAEAMEKPL---------PRCFRVNTLKI-SVQDLVKRLNKKGFQFKRVPWAK 77
Query: 70 SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
GF I ++ + G IY +A+S AL+ G+ V D+ AAPG K +
Sbjct: 78 EGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLA 137
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR-CRLFVADGTTFSLAPL---RLLLD- 184
++ + G + DV +RL R L + LG LF + + ++LLD
Sbjct: 138 QLMRNDGVIYAFDVDENRLRETRLNLSR--LGVLNVILFHSSSLHIGELNVEFDKILLDA 195
Query: 185 PGSCNSVLQEKDDTFREWT 203
P + + + + + T
Sbjct: 196 PCTGSGTIHKNPERKWNRT 214
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 79.9 bits (198), Expect = 2e-17
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 39 PRYIR---LKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGI 95
++IR LK N L++ LEK F I ++ Y G
Sbjct: 10 MQFIRVNTLKI-NPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPEYLFGYYMPQ 68
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAA 150
+S LN D +LD+CAAPG K + ++ + G++ V++++ R A
Sbjct: 69 SISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKA 123
Score = 27.9 bits (63), Expect = 3.9
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 9/42 (21%)
Query: 265 YDKVLVDAECTHDGSIKHIQKFENWGW------TTLQRRVLD 300
+DK+L+DA C+ + K N + Q+ ++D
Sbjct: 157 FDKILLDAPCSGNIIKD---KNRNVSEEDIKYCSLRQKELID 195
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 78.1 bits (193), Expect = 2e-16
Identities = 35/199 (17%), Positives = 70/199 (35%), Gaps = 25/199 (12%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIR---LKTGNEADLEEIEAELKCKLEKVVWLS 70
L E DF + R LK ++ +E +L+ + +
Sbjct: 20 LGEEASDFFSALEQGSV--------KKGFRWNPLKPAGLDMVQTYHSE---ELQPAPYSN 68
Query: 71 -GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
GF S ++ G Y + ++ +A G+ VLDLCAAPG K +
Sbjct: 69 EGFLGTVN----GKSFLHQAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLA 124
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL----RLLLD- 184
+ G + ++ R ++++ + + + R+++D
Sbjct: 125 AQMKGKGLLVTNEIFPKRAKILSENIERWGVSN-AIVTNHAPAELVPHFSGFFDRIVVDA 183
Query: 185 PGSCNSVLQEKDDTFREWT 203
P S + ++ + +EWT
Sbjct: 184 PCSGEGMFRKDPNAIKEWT 202
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 78.2 bits (193), Expect = 2e-16
Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 21/209 (10%)
Query: 14 LPEAFLDFLKENGLDPSVYSA---ADSTPRY--IR---LKTGNEADLEEIEAELKCKLEK 65
P+AFL ++E + A P IR LK + AD ++ A L
Sbjct: 8 FPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKI-SVADFLQLTAPYGWTLTP 66
Query: 66 VVWLS-GFY---SLPPDIKIATSMAYKQGKIYGIDAASGAAVSAL--NISAGDHVLDLCA 119
+ W GF+ + + ++ + G Y +A+S V+AL + +A V+D+ A
Sbjct: 67 IPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAA 126
Query: 120 APGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL 179
APG+K I + + G++ + + R+ + + + + L DG F A
Sbjct: 127 APGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISN-VALTHFDGRVFGAAVP 185
Query: 180 ----RLLLD-PGSCNSVLQEKDDTFREWT 203
+LLD P S V+++ D + W+
Sbjct: 186 EMFDAILLDAPCSGEGVVRKDPDALKNWS 214
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 76.6 bits (189), Expect = 3e-16
Identities = 43/181 (23%), Positives = 67/181 (37%), Gaps = 30/181 (16%)
Query: 35 ADSTPRYIR---LKTGNEADLEEIEAE-----------------LKCKLEKVVWLSGFYS 74
A PR++R LKT ++ ++ + + +
Sbjct: 7 ASQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLV 66
Query: 75 LPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGD 134
P + Y+ G + D AS L+ G HV+D CAAPG K + ++ +
Sbjct: 67 FPAQTDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKN 126
Query: 135 SGSVTGVDVARHRLAACRTLLQKYALGDRC-RLFVADGTTFSLAPL------RLLLDPGS 187
G + D+ RLA+ TLL + G C L D S + +LLDP S
Sbjct: 127 QGKIFAFDLDAKRLASMATLLAR--AGVSCCELAEEDFLAVSPSDPRYHEVHYILLDP-S 183
Query: 188 C 188
C
Sbjct: 184 C 184
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 76.6 bits (189), Expect = 7e-16
Identities = 49/203 (24%), Positives = 79/203 (38%), Gaps = 20/203 (9%)
Query: 14 LPEAFLDFLKEN-GLD-PSVYSAADSTPRY--IR---LKTGNEADLEEIEAELKCKLEKV 66
LP+AFL + E G + P+ A R +R LK E + L +
Sbjct: 2 LPKAFLSRMAELLGEEFPAFLKALTEGKRTYGLRVNTLKL----PPEAFQRISPWPLRPI 57
Query: 67 VWL-SGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKL 125
W GFY P + + + G Y + ++ A L+ G+ VLDL AAPG K
Sbjct: 58 PWCQEGFY-YPEEARPGPHPFFYAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKT 116
Query: 126 CMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL----RL 181
+ +G G + +V R+ +++ G + A + A R+
Sbjct: 117 THLAARMGGKGLLLANEVDGKRVRGLLENVER--WGAPLAVTQAPPRALAEAFGTYFHRV 174
Query: 182 LLD-PGSCNSVLQEKDDTFREWT 203
LLD P S + ++ + R W
Sbjct: 175 LLDAPCSGEGMFRKDREAARHWG 197
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 71.9 bits (177), Expect = 3e-14
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 50 ADLEEIEAELK---CKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSAL 106
A++EE+ EL+ ++ + + + TS A+ +GKI + AS A L
Sbjct: 196 ANVEEVIGELEEDGVEVVRSERVPTILKIKGPYNFDTSSAFNEGKIIVQEEASAVASIVL 255
Query: 107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG-DRCR 165
+ G+ V+DL AAPG K + +++ + G + DV + R+ + +++ +G +
Sbjct: 256 DPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKR--MGIKIVK 313
Query: 166 LFVADGTTF 174
V D
Sbjct: 314 PLVKDARKA 322
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 68.0 bits (167), Expect = 5e-13
Identities = 33/138 (23%), Positives = 56/138 (40%), Gaps = 7/138 (5%)
Query: 39 PRYIRLKTGNEADLEEIEAELK---CKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGI 95
P ++R+ + A L K L + ++ G +
Sbjct: 173 PMWLRINR-THHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQ 231
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
DA++ ++ L G+H+LDLCAAPG K IL++ + V VD+ RL+ L
Sbjct: 232 DASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNL 290
Query: 156 QKYALGDRCRLFVADGTT 173
++ LG + + DG
Sbjct: 291 KR--LGMKATVKQGDGRY 306
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 59.7 bits (144), Expect = 5e-10
Identities = 72/384 (18%), Positives = 109/384 (28%), Gaps = 125/384 (32%)
Query: 8 EISKL-----PLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCK 62
E+ L L + F E L + + D+ + + G ++ E
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAET-LSELIRTTLDAEKVFTQ---G--LNILE-------- 217
Query: 63 LEKVVWLSGFYSLPPD---IKIATSM---------AYK-QGKIYGID---------AASG 100
WL + P + I S Y K+ G A+G
Sbjct: 218 -----WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 101 AA---VSALNISAGD----------HVLDL-------C--AAPGAKLCMILDIIGDS--- 135
+ V+A+ I+ D + + C A P L I+ DS
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP--PSILEDSLEN 330
Query: 136 --G------SVTGVD---VARHRLAACRTLLQKY-----AL--GDRCRLFVADGTTFSLA 177
G S++ + V + + + L +L G + V G SL
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDY-VNKTNSHLPAGKQVEISLVNGAKN--LVVSGPPQSLY 387
Query: 178 PLRLLLDPGSCNSVL-QEKDDTFREWTSRIPWKERKRAVKAR-------------ENAAS 223
L L L S L Q SRIP+ ERK R A+
Sbjct: 388 GLNLTLRKAKAPSGLDQ----------SRIPFSERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 224 KAIVRSEHPELIFYGRRSGI-VGLTKEEIYQSVCNSEVSSSGYDKVL---VDAECTHDGS 279
+ F + I V T + V + +S D ++ V E T
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 280 IKHIQKF---ENWGWTTLQRRVLD 300
HI F G L R D
Sbjct: 498 ATHILDFGPGGASGLGVLTHRNKD 521
Score = 42.0 bits (98), Expect = 2e-04
Identities = 40/217 (18%), Positives = 68/217 (31%), Gaps = 74/217 (34%)
Query: 3 CTLDGEISKLPLPE-----------AFLDFLKENGLDP--------SV--YSA----ADS 37
T E L + A + LK GL P S+ Y+A AD
Sbjct: 1717 YTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADV 1776
Query: 38 TPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSG--FYSLPPDIKIATSMAYKQGKIYGI 95
IE+ + +VV+ G P ++ S YG+
Sbjct: 1777 MS---------------IESLV-----EVVFYRGMTMQVAVPRDELGRSN-------YGM 1809
Query: 96 DAASGAAVSA-LNISAGDHVLDLCAAPGAKLCMI----LD----IIGDSGSVTGVDVARH 146
A + V+A + A +V++ L I ++ + +G + +D +
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA--AGDLRALDTVTN 1867
Query: 147 RLAACRTLLQKYALGDRCRLFVADGTTFSLAPLRLLL 183
L + LQK + L + SL + L
Sbjct: 1868 VLNFIK--LQKIDI---IELQK----SLSLEEVEGHL 1895
Score = 41.6 bits (97), Expect = 3e-04
Identities = 63/342 (18%), Positives = 93/342 (27%), Gaps = 101/342 (29%)
Query: 6 DGEISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEK 65
D + L FL ++ ++PS D L L E E
Sbjct: 52 DEPTTPAELVGKFLGYVSSL-VEPSKVGQFDQV-----LNLC----LTEFENC------- 94
Query: 66 VVWLSG------FYSLPPDIKIATSM------AYKQGKIYGIDAASGAAVSALNISAGDH 113
+L G L + Y +I + SAL
Sbjct: 95 --YLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL------- 145
Query: 114 VLDLCAAPGAKLCMILDIIGDSGSVTG-VDVARHRLAACRTLLQKYALGDRCRLFVADGT 172
A+L I G G+ + L R L Q Y + V D
Sbjct: 146 -FRAVGEGNAQLVAIF---GGQGNTDDYFE----EL---RDLYQTY------HVLVGDLI 188
Query: 173 TFSLAPL-RLLLDPGSCNSVLQEKDDTFREW---TSRIPWKERKRAVKARENAASKAIVR 228
FS L L+ V + + EW S P ++ S I
Sbjct: 189 KFSAETLSELIRTTLDAEKVFTQGLN-ILEWLENPSNTP---------DKDYLLSIPI-- 236
Query: 229 SEHPELIF------YGRRSGIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECT------- 275
S P LI Y + ++G T E+ + ++G+ + LV A
Sbjct: 237 S-CP-LIGVIQLAHYVVTAKLLGFTPGELRSYLK----GATGHSQGLVTAVAIAETDSWE 290
Query: 276 --HDGSIKHIQK-FENW-GWTTLQ---RRVLDPE-RTDSVTN 309
K I F + G + L P DS+ N
Sbjct: 291 SFFVSVRKAITVLF--FIGVRCYEAYPNTSLPPSILEDSLEN 330
Score = 29.2 bits (65), Expect = 2.1
Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 29/121 (23%)
Query: 172 TTFSLAPLRLLLDPGSCNSVLQEKDDTFR-----EWT------SRIPWKERKRAVKAREN 220
T A L G L D TF E+ + + V R
Sbjct: 1737 TLMEKAAFEDLKSKG-----LIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM 1791
Query: 221 AASKAIVRSEHPELIFYGRRS-GIVGLTKEEIYQSVCNSEVSSSGYDKVLVDAECTHDGS 279
A+ R E GR + G++ + + S + + +V+ G
Sbjct: 1792 TMQVAVPRDEL------GRSNYGMIAINPGRVAASFSQEAL------QYVVERVGKRTGW 1839
Query: 280 I 280
+
Sbjct: 1840 L 1840
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 53.9 bits (129), Expect = 1e-08
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL------ 154
A A + G+ +L++ G ++ D +G SG VTG+D+A A TL
Sbjct: 34 AIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNH 93
Query: 155 LQKYALGDRCRLFVADGTTFSLAPL 179
L LGDR + + L P+
Sbjct: 94 LLAGPLGDRLTVHFNTNLSDDLGPI 118
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 47.7 bits (113), Expect = 1e-06
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 3/101 (2%)
Query: 71 GFYSLPPDIK-IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
F L P I M ++ DAA V+ IS GD +++ GA +
Sbjct: 55 EFKILRPRIVDYLDKMKRGPQIVHPKDAA--LIVAYAGISPGDFIVEAGVGSGALTLFLA 112
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD 170
+I+G G V ++ ++ DR + + D
Sbjct: 113 NIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKD 153
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 46.2 bits (109), Expect = 6e-06
Identities = 26/118 (22%), Positives = 37/118 (31%), Gaps = 16/118 (13%)
Query: 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVD-------VARHRLAACR 152
G+ + A G VLDL G + + ++G+ G V GVD VAR +
Sbjct: 73 GSTLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHA 132
Query: 153 TLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGS-----CNSVLQ---EKDDTFREW 202
R + A + D S N V K F+E
Sbjct: 133 EKFFGSPSRSNVRFLKGFIENLATAEPEGVPD-SSVDIVISNCVCNLSTNKLALFKEI 189
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 45.8 bits (108), Expect = 7e-06
Identities = 11/70 (15%), Positives = 20/70 (28%)
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167
+ G V + ++L + + G+D L L +AL + L
Sbjct: 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLH 175
Query: 168 VADGTTFSLA 177
D
Sbjct: 176 RQDAWKLDTR 185
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 44.9 bits (106), Expect = 8e-06
Identities = 16/66 (24%), Positives = 26/66 (39%)
Query: 105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRC 164
+ + GD V+D G + ++G++G V G D+ +A L L DR
Sbjct: 17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRV 76
Query: 165 RLFVAD 170
L
Sbjct: 77 TLIKDG 82
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 44.9 bits (106), Expect = 1e-05
Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 18/105 (17%)
Query: 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR 165
I+ H++D G +++ ++ + TG+D LA R L + L
Sbjct: 18 WKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL--LPYDSE 75
Query: 166 LFVADGTTFSLAPLRLLLDPGS-----CNSVLQ---EKDDTFREW 202
D T L C++ L + ++
Sbjct: 76 FLEGDATEIEL--------NDKYDIAICHAFLLHMTTPETMLQKM 112
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 43.1 bits (102), Expect = 3e-05
Identities = 16/107 (14%), Positives = 32/107 (29%), Gaps = 16/107 (14%)
Query: 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
+ + G VLD+ G L + ++G+ G V +DV + + K L
Sbjct: 30 LKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL-K 88
Query: 163 RCRLFVADGTTFSLAPLRLLLDPGS-----CNSVLQE---KDDTFRE 201
+ ++ ++ L + E E
Sbjct: 89 NVEVLKSEEN-------KIPLPDNTVDFIFMAFTFHELSEPLKFLEE 128
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 42.7 bits (100), Expect = 6e-05
Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Query: 72 FYSLPPDIK-IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
Y L P + +M + +Y D++ L++ GD ++D GA ++
Sbjct: 75 GYILIPSLIDEIMNMKRRTQIVYPKDSS--FIAMMLDVKEGDRIIDTGVGSGAMCAVLAR 132
Query: 131 IIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADG 171
+G SG V + + L K+ L +R + V D
Sbjct: 133 AVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI 173
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 42.5 bits (100), Expect = 9e-05
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 8/107 (7%)
Query: 69 LSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAV----SALNISAGDHVLDLCAAPGAK 124
+ ++ + G +D A+ + L++ +GD VLD+ G
Sbjct: 16 FTDPFARIWGENLHFGYWEDAGADVSVDDATDRLTDEMIALLDVRSGDRVLDVGCGIGK- 74
Query: 125 LCMILDIIGDSG-SVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD 170
+ + VTG+ ++R ++ L +R AD
Sbjct: 75 --PAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYAD 119
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 41.8 bits (98), Expect = 1e-04
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 2/76 (2%)
Query: 95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL 154
+ G VL+ GA +IL +T +D++ L R
Sbjct: 22 AETLEKLLHHDTVYPPGAKVLEAGCGIGA-QTVILAKNNPDAEITSIDISPESLEKAREN 80
Query: 155 LQKYALGDRCRLFVAD 170
+K + + A+
Sbjct: 81 TEKNGI-KNVKFLQAN 95
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 41.0 bits (96), Expect = 3e-04
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
Query: 94 GIDAASGAAVSAL-NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
G A+ AVS + ++ + D+ G + + D + G +TG+D+ +
Sbjct: 29 GSPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFN 86
Query: 153 TLLQKYALGDRCRLFVAD 170
K DR +
Sbjct: 87 ENAVKANCADRVKGITGS 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 4e-04
Identities = 28/216 (12%), Positives = 76/216 (35%), Gaps = 44/216 (20%)
Query: 58 ELKCKLE-KVVWLS-GFYSLPPDI-KIATSMAYKQGKIYGIDAASGAAVSALNISAGDHV 114
+++CK++ K+ WL+ + P + ++ + Y+ + + + + S +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 115 LDLCAAPGAKLC-MILDIIGDSGSVTGVDVARHRLAACRTLL--QKYALGDRCRLFVADG 171
L + + C ++L + ++ + +++ C+ LL + + D L A
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLS------CKILLTTRFKQVTD--FLSAATT 286
Query: 172 TTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVRSEH 231
T SL + L P E ++ P + + +
Sbjct: 287 THISLDHHSMTLTPD-------EVKSLLLKYLDCRPQDLPREVLTT-------------N 326
Query: 232 PELIFYGRRSGIVGLTKEEI-----YQSVCNSEVSS 262
P + S I ++ + ++ V ++++
Sbjct: 327 PRRL-----SIIAESIRDGLATWDNWKHVNCDKLTT 357
Score = 31.4 bits (70), Expect = 0.47
Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 25/105 (23%)
Query: 14 LPEAFLDF------LKENGLDPSVYSAADST-------PRYIRLKTGNEADLEEIEAELK 60
FLDF ++ + + + +T YI N+ E + +
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI---CDNDPKYERLVNAIL 549
Query: 61 ---CKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAA 102
K+E+ + S + L ++IA + + I+ +A
Sbjct: 550 DFLPKIEENLICSKYTDL---LRIA--LMAEDEAIF-EEAHKQVQ 588
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 39.5 bits (92), Expect = 7e-04
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 94 GIDAASGAAVSAL-NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
G + A+S + N++ + D+ G + ++ + G VTG+D +
Sbjct: 29 GSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFN 86
Query: 153 TLLQKYALGDRCRLFVAD 170
++ L +R V
Sbjct: 87 RNARQSGLQNRVTGIVGS 104
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 39.4 bits (92), Expect = 0.001
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 7/100 (7%)
Query: 71 GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILD 130
G Y P D ++ + + + + LDL A G ++
Sbjct: 48 GLYKEPVDQD-----EIREASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVR 102
Query: 131 IIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVAD 170
G S+ +++A + + L D +
Sbjct: 103 KFG--VSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGS 140
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 38.7 bits (90), Expect = 0.001
Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 15/104 (14%)
Query: 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
++ + + + DL PG ++ D G +TG+D L
Sbjct: 26 LAQVPLERVLNGYDLGCGPGNSTELLTDRYGV-NVITGIDSDDDMLEKAA------DRLP 78
Query: 163 RCRLFVADGTTFSLA-PLRLLLDPGSCNSVLQ---EKDDTFREW 202
AD T+ A LL N+V Q + +
Sbjct: 79 NTNFGKADLATWKPAQKADLLY----ANAVFQWVPDHLAVLSQL 118
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 38.7 bits (90), Expect = 0.001
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 6/103 (5%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
+DA A+ + + DL A GA + + + VT + ++ R
Sbjct: 21 GHMDAMLLAS--LVADDRACRIADLGAGAGAAGMAVAARLEKA-EVTLYERSQEMAEFAR 77
Query: 153 ---TLLQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVL 192
L A R + AD T + A + L + V+
Sbjct: 78 RSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEHFHHVI 120
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 38.2 bits (89), Expect = 0.002
Identities = 20/108 (18%), Positives = 29/108 (26%), Gaps = 25/108 (23%)
Query: 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
+ LN G+ +LDL G + I V G D A + R
Sbjct: 50 LQLLNPQPGEFILDLGCGTGQ---LTEKIAQSGAEVLGTDNAATMIEKAR------QNYP 100
Query: 163 RCRLFVADGTTFSLAPLRLLLDPGS-----CNSVLQ---EKDDTFREW 202
VAD F + N++L E +
Sbjct: 101 HLHFDVADARNFRV--------DKPLDAVFSNAMLHWVKEPEAAIASI 140
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 37.8 bits (88), Expect = 0.003
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRC 164
L + G +LDL + G LC G + TG+D++ A + ++ + +R
Sbjct: 31 VLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGVSERV 88
Query: 165 RLFVAD 170
D
Sbjct: 89 HFIHND 94
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 37.9 bits (87), Expect = 0.003
Identities = 23/180 (12%), Positives = 52/180 (28%), Gaps = 26/180 (14%)
Query: 2 LCTLDGEISKLPLPEAFLDFLKENGL--DPSVYSAADSTPRYIRLKTGNEADLEEIEAEL 59
+ L EI ++ +DF + D + A + LE +A+
Sbjct: 32 VMPLLDEIEEIAHDS-TIDFESAKHILDDAEMNHA---LSLIRKFYVNLGMKLEMEKAQE 87
Query: 60 KCKLEKVV-WLSGFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLC 118
+ + L FY P +++ + + G+ + +
Sbjct: 88 VIESDSPWETLRSFYFYPRYLELLKNE-----------------AALGRFRRGERAVFIG 130
Query: 119 AAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP 178
P ++L + V V++ R +++ + D + D T
Sbjct: 131 GGPLPLTGILLSHVYG-MRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGLE 188
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 37.5 bits (87), Expect = 0.003
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Query: 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG 161
++ I+AG +D+ + PGA + S+ +D ++H + L
Sbjct: 36 IINRFGITAGT-CIDIGSGPGALSIALAKQSD--FSIRALDFSKHMNEIALKNIADANLN 92
Query: 162 DRCRLFVAD 170
DR ++ D
Sbjct: 93 DRIQIVQGD 101
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 36.7 bits (86), Expect = 0.004
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVD 142
G V+DL AAPG ++ IG G + D
Sbjct: 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACD 54
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 36.7 bits (85), Expect = 0.005
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
+ A + +LDL A G +++ ++ + T VD++ L + ++
Sbjct: 35 SVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEA-TFTLVDMSEKMLEIAK---NRFRG 90
Query: 161 GDRCRLFVADGTTFSL 176
+ + AD + +
Sbjct: 91 NLKVKYIEADYSKYDF 106
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 36.7 bits (85), Expect = 0.006
Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 4/85 (4%)
Query: 86 AYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVAR 145
Y +I+ + + + + VLD+ G + V D+
Sbjct: 13 MYVTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTE 69
Query: 146 HRLAACRTLLQKYALGDRCRLFVAD 170
L R ++ + D
Sbjct: 70 DILKVARAFIEGNGH-QQVEYVQGD 93
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 35.8 bits (82), Expect = 0.009
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD 162
+ L + GD +L L A G + DIIG G + GV+ A R+ R LL
Sbjct: 70 LIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFA-PRVM--RDLLTVVRDRR 126
Query: 163 RCRLFVADGT 172
+ D
Sbjct: 127 NIFPILGDAR 136
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 35.2 bits (81), Expect = 0.014
Identities = 13/112 (11%), Positives = 33/112 (29%), Gaps = 26/112 (23%)
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
+ + + +VL+ G + ++ +V G++ +R + +K
Sbjct: 36 DILEDVVNKSFGNVLEFGVGTGN---LTNKLLLAGRTVYGIEPSREMRMIAK---EKL-- 87
Query: 161 GDRCRLFVADGTTFSLAPLRLLLDPGS-----CNSVL-----QEKDDTFREW 202
+ D +F + P S EK+ ++
Sbjct: 88 PKEFSITEGDFLSFEV--------PTSIDTIVSTYAFHHLTDDEKNVAIAKY 131
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 36.0 bits (82), Expect = 0.015
Identities = 16/77 (20%), Positives = 31/77 (40%)
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
A+ + S+ ++D G+ L +LD ++ GVD++ LA +L
Sbjct: 712 YALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLN 771
Query: 161 GDRCRLFVADGTTFSLA 177
+ C + A S+
Sbjct: 772 KEACNVKSATLYDGSIL 788
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 35.3 bits (81), Expect = 0.019
Identities = 16/82 (19%), Positives = 32/82 (39%), Gaps = 3/82 (3%)
Query: 94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRT 153
G+D + + L + ++DL G +LD + V VD + +A+ R
Sbjct: 206 GLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQA-KVVFVDESPMAVASSRL 264
Query: 154 LLQKYALG--DRCRLFVADGTT 173
++ DRC + + +
Sbjct: 265 NVETNMPEALDRCEFMINNALS 286
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.026
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSA 105
K+ S+ K+Y D+A A+ A
Sbjct: 24 KLQASL-----KLYADDSAPALAIKA 44
Score = 32.6 bits (73), Expect = 0.067
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 19/46 (41%)
Query: 8 EISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLE 53
+ KL + L Y A DS P + +K A +E
Sbjct: 21 ALKKL-----------QASLKL--Y-ADDSAPA-LAIK----ATME 47
Score = 29.1 bits (64), Expect = 1.2
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 15/37 (40%)
Query: 52 LEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYK 88
L++++A LK Y+ D A ++A K
Sbjct: 22 LKKLQASLK-----------LYA--DD--SAPALAIK 43
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 34.4 bits (79), Expect = 0.028
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 4/71 (5%)
Query: 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYA 159
G + A VLD+ A G + GVD + + + Q+
Sbjct: 11 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKG 67
Query: 160 LGDRCRLFVAD 170
+ + R
Sbjct: 68 V-ENVRFQQGT 77
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 33.9 bits (78), Expect = 0.028
Identities = 4/52 (7%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
+ + ++D G ++ + + +D+ L +
Sbjct: 8 EYLPNIFEGKKGVIVDYGCGNGF---YCKYLLEFATKLYCIDINVIALKEVK 56
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 34.5 bits (79), Expect = 0.029
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
V+AL S V+DL G L ++L +TGVDV+ L + L + L
Sbjct: 20 GVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFE-QITGVDVSYRSLEIAQERLDRLRL 78
Query: 161 GDRCRL 166
Sbjct: 79 PRNQWE 84
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 33.8 bits (77), Expect = 0.048
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 5/76 (6%)
Query: 96 DAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
A+ A + L+L G + L +I +D L R +
Sbjct: 25 QIATAMASAVHPKGEEPVFLELGVGTGR---IALPLIARGYRYIALDADAAMLEVFRQKI 81
Query: 156 QKYALGDRCRLFVADG 171
+ + ++ AD
Sbjct: 82 A--GVDRKVQVVQADA 95
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 33.6 bits (77), Expect = 0.061
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 7/79 (8%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSG-SVTGVDVARHRLAAC 151
G A+ +S + ++ VLD+ + G + I G G+D+ + +
Sbjct: 38 SGGLEATKKILSDIELNENSKVLDIGSGLGG---GCMYINEKYGAHTHGIDICSNIVNMA 94
Query: 152 RTLLQKYALGDRCRLFVAD 170
++ + ++ D
Sbjct: 95 N---ERVSGNNKIIFEAND 110
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 33.1 bits (75), Expect = 0.071
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVA 144
+ I G VL L A G + DI+G G + G++ +
Sbjct: 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFS 107
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 33.1 bits (75), Expect = 0.072
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVA 144
A + I G VL L AA G + + DII +G GV+ +
Sbjct: 63 GAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFS 110
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 33.2 bits (75), Expect = 0.089
Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 2/75 (2%)
Query: 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR 165
L GD VLDL G L G GVD+A + R + +
Sbjct: 60 LYTKRGDSVLDLGCGKGGDLLKYER--AGIGEYYGVDIAEVSINDARVRARNMKRRFKVF 117
Query: 166 LFVADGTTFSLAPLR 180
D + +
Sbjct: 118 FRAQDSYGRHMDLGK 132
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 32.8 bits (75), Expect = 0.091
Identities = 17/108 (15%), Positives = 30/108 (27%), Gaps = 10/108 (9%)
Query: 93 YGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSG-SVTGVDVARHRLAAC 151
G D A + G +LD G I + G V G D+ +
Sbjct: 29 AGNDIYGEARLIDAMAPRGAKILDAGCGQGR----IGGYLSKQGHDVLGTDLDPILIDYA 84
Query: 152 RTLLQK--YALGDRCRLFVADGT---TFSLAPLRLLLDPGSCNSVLQE 194
+ + + +GD +++ S + L L
Sbjct: 85 KQDFPEARWVVGDLSVDQISETDFDLIVSAGNVMGFLAEDGREPALAN 132
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.70A {Plasmodium falciparum}
Length = 201
Score = 32.6 bits (75), Expect = 0.10
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGD-SGSVTGVD 142
+ +LD+ PG+ +IL+ + + G+D
Sbjct: 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGID 55
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 32.5 bits (74), Expect = 0.12
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 7/66 (10%)
Query: 107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRL 166
+ VLD+ G + GVD++ + + + G
Sbjct: 50 YVKKEAEVLDVGCGDGYGTYKLSR---TGYKAVGVDISEVMIQKGK----ERGEGPDLSF 102
Query: 167 FVADGT 172
D +
Sbjct: 103 IKGDLS 108
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 32.6 bits (74), Expect = 0.12
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
V+ L V+DL G L ++L +TGVDV+ L + L+ L
Sbjct: 20 TVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFE-QITGVDVSYSVLERAKDRLKIDRL 78
Query: 161 GDRCRLFV 168
+ R +
Sbjct: 79 PEMQRKRI 86
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 32.0 bits (72), Expect = 0.20
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVA 144
AA V ++I G VL L AA G + + DI+G G V V+ +
Sbjct: 64 AAILGGVDQIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFS 111
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 31.8 bits (72), Expect = 0.20
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167
+S G +LD+ + L + L G S +V + ++ + L ++ ++
Sbjct: 13 VSQGAILLDVGSDHAY-LPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVR 71
Query: 168 VADG 171
+A+G
Sbjct: 72 LANG 75
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 31.7 bits (72), Expect = 0.22
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 9/91 (9%)
Query: 88 KQGKIYGIDA---ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVA 144
+ IDA A + + ++DLC+ G ++ + GV++
Sbjct: 28 PSVFSFSIDAVLLAKFSYLPI----RKGKIIDLCSGNGIIPLLLSTRT--KAKIVGVEIQ 81
Query: 145 RHRLAACRTLLQKYALGDRCRLFVADGTTFS 175
+ + L D+ + D +
Sbjct: 82 ERLADMAKRSVAYNQLEDQIEIIEYDLKKIT 112
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 31.3 bits (71), Expect = 0.25
Identities = 14/103 (13%), Positives = 24/103 (23%), Gaps = 22/103 (21%)
Query: 94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVD-------VARH 146
A + G+ +L++ A G L + GV+ V R
Sbjct: 20 AYVIAEEERALKGLLPPGESLLEVGAGTGYWLRRLPY-----PQKVGVEPSEAMLAVGRR 74
Query: 147 RLAACRTLLQKYALGDRCRLFVADGT----TFSLAPLRLLLDP 185
R + L + L + D
Sbjct: 75 RAPEAT-----WVRAWGEALPFPGESFDVVLLFTT-LEFVEDV 111
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 31.8 bits (72), Expect = 0.25
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ-KYA 159
A ++ LN+ G + D+ A G + L V V+ + Q ++
Sbjct: 25 AIINLLNLPKGSVIADIGAGTG-GYSVAL--ANQGLFVYAVEPSIVMRQQAVVHPQVEWF 81
Query: 160 LGDRCRLFVADGT 172
G L + D +
Sbjct: 82 TGYAENLALPDKS 94
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 31.8 bits (72), Expect = 0.28
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 107 NISAGDHVLDLCAAPGAKLCMILDIIGDSG-SVTGVDVARHRLAACRTLLQKYALGDRCR 165
D ++D G ++ G V GV ++ + ++ + D R
Sbjct: 114 QAGPDDTLVDAGCGRGG---SMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVR 170
Query: 166 LFVAD 170
V +
Sbjct: 171 SRVCN 175
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 31.4 bits (71), Expect = 0.30
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 110 AGDHVLDLCAAPGAKLCMILDIIGDSG-SVTGVDVARHRLAACRTLLQKYAL--GDRCRL 166
VL+L A G LD G VT ++++ LAA R L + DRC L
Sbjct: 82 VSGPVLELAAGMGRLTFPFLD----LGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTL 137
Query: 167 FVADGTTFSL 176
D + F+L
Sbjct: 138 VQGDMSAFAL 147
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 31.4 bits (71), Expect = 0.32
Identities = 10/64 (15%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167
+ G +LD+ + L + L +G +V + + ++ L + +
Sbjct: 19 VPKGARLLDVGSDHAY-LPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVR 77
Query: 168 VADG 171
+A+G
Sbjct: 78 LANG 81
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 30.8 bits (69), Expect = 0.36
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA 169
G V DL A G L ++G V V+V + + L + + ++F+
Sbjct: 49 EGKVVADLGAGTGV-LSYGALLLGAK-EVICVEVDKEAVDVLIENLGE--FKGKFKVFIG 104
Query: 170 DGTTFS 175
D + F+
Sbjct: 105 DVSEFN 110
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, transferase; 2.40A {Neisseria meningitidis}
Length = 794
Score = 31.4 bits (71), Expect = 0.37
Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 34/121 (28%)
Query: 16 EAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSL 75
EA+ FL NGL + +A L + A+L + E++ +
Sbjct: 50 EAYRAFLAHNGLSERISAALAK------LDVEDVAELARVGKEIRQWILDT-------PF 96
Query: 76 PPDIKIATSMAYKQ-GKIYGIDAASGAAV--SA-----------------LNISAGDHVL 115
P + A+ + G S AV SA LNI+ D+V
Sbjct: 97 PEQLDAEIEAAWNKMVADAGGADIS-VAVRSSATAEDLPDASFAGQQETFLNINGLDNVK 155
Query: 116 D 116
+
Sbjct: 156 E 156
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 31.2 bits (70), Expect = 0.42
Identities = 6/83 (7%), Positives = 22/83 (26%), Gaps = 1/83 (1%)
Query: 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG- 161
+ + ++D+ PG + + + G D++ + + +
Sbjct: 29 IDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY 88
Query: 162 DRCRLFVADGTTFSLAPLRLLLD 184
++ F +
Sbjct: 89 KNVSFKISSSDDFKFLGADSVDK 111
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.46
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 192 LQEKDDTFREWTSRIPWKERKR---AVKARENAASKAIVRSEHPELI--FYGRRSGIVGL 246
L ++ ++ R+W +E +R + + R + + + + R+S V
Sbjct: 80 LTQEPESIRKW------REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 247 TKEE 250
K
Sbjct: 134 NKIN 137
Score = 27.8 bits (61), Expect = 3.5
Identities = 13/59 (22%), Positives = 18/59 (30%), Gaps = 17/59 (28%)
Query: 192 LQEKDDTFR---------------EWTSRIPWKERKRAVKARENAASKAIVRSEHPELI 235
LQE D + EW R E+ K A KA + ++I
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWNQR--QSEQVEKNKINNRIADKAFYQQPDADII 154
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 30.3 bits (69), Expect = 0.47
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Query: 94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRT 153
+D + V + + D +LDL G + D + S T D+ R + +
Sbjct: 36 KVDKGTKILVENVVVDKDDDILDLGCGYGVIGIALAD---EVKSTTMADINRRAIKLAKE 92
Query: 154 LLQKYALGD-RCRLFVADGT 172
++ L + R+ +D
Sbjct: 93 NIKLNNLDNYDIRVVHSDLY 112
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 30.6 bits (69), Expect = 0.48
Identities = 6/64 (9%), Positives = 21/64 (32%), Gaps = 1/64 (1%)
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLF 167
I+ + + D+ + L + +V + + ++ L ++ +
Sbjct: 19 ITKNERIADIGSDHAY-LPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVR 77
Query: 168 VADG 171
+G
Sbjct: 78 KGNG 81
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 30.8 bits (70), Expect = 0.54
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRT 153
G+D S +S L VLD+ G L + +T DV+ + A R
Sbjct: 180 GLDVGSQLLLSTLTPHTKGKVLDVGCGAGV-LSVAFARHSPKIRLTLCDVSAPAVEASRA 238
Query: 154 LLQKYALGDRCRLFVADGT 172
L A G +F ++
Sbjct: 239 TLA--ANGVEGEVFASNVF 255
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 30.1 bits (68), Expect = 0.59
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
A+SAL + + D+ G+ + + + +++ R + +
Sbjct: 16 LAISALAPKPHETLWDIGGGSGS-IAIEWLRSTPQTTAVCFEISEERRERILSNAINLGV 74
Query: 161 GDR 163
DR
Sbjct: 75 SDR 77
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.76A {Homo sapiens}
Length = 196
Score = 30.2 bits (69), Expect = 0.59
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 111 GDHVLDLCAAPG 122
G VLD AAPG
Sbjct: 23 GLRVLDCGAAPG 34
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 29.8 bits (68), Expect = 0.68
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 108 ISAGDHVLDLCAAPG 122
+ GD V+++ ++PG
Sbjct: 23 VRKGDAVIEIGSSPG 37
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 458
Score = 30.5 bits (69), Expect = 0.69
Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 19/80 (23%)
Query: 17 AFLDFLKENGLDPSVYSAADSTPRYIR--LKTGNEADLEEIEAELKCKLEKVVWLSGFYS 74
F L+ G + L + DLE++E + +
Sbjct: 327 GFDALLRSMGAHTVAAVVPARAAALVDSPLPSVRVGDLEDLEHAAR-------------A 373
Query: 75 LPPDIKIATS----MAYKQG 90
+ I S A + G
Sbjct: 374 GQAQLVIGNSHALASARRLG 393
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 30.3 bits (68), Expect = 0.74
Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 9/66 (13%)
Query: 86 AYKQGKIYGIDAASGAA------VSALNISAGDHVLDLCAAPGA---KLCMILDIIGDSG 136
+GK+ A S + V+DL G ++ G G
Sbjct: 44 HLAEGKVDTGVAVSRGTAKLRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKG 103
Query: 137 SVTGVD 142
G D
Sbjct: 104 FTLGRD 109
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 30.0 bits (67), Expect = 0.75
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Query: 98 ASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK 157
S +++L LD A G +L + + ++ +H L + ++
Sbjct: 81 GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYAT--TDLLEPVKHMLEEAK---RE 135
Query: 158 YALGDRCRLFVADGTTFSLAP 178
A + +A T +L P
Sbjct: 136 LAGMPVGKFILASMETATLPP 156
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 30.1 bits (67), Expect = 0.80
Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVA 144
AA + + I +L L A+ G + D I D G V ++ A
Sbjct: 61 AAIIKGLKVMPIKRDSKILYLGASAGTTPSHVAD-IADKGIVYAIEYA 107
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 29.8 bits (67), Expect = 0.98
Identities = 9/75 (12%), Positives = 20/75 (26%), Gaps = 7/75 (9%)
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSG-SVTGVDVARHRLAACRTLL--QK 157
+ +LD+ + G + G + G++ A + R
Sbjct: 32 VLIEPWATGVDGVILDVGSGTGRWTGHLA----SLGHQIEGLEPATRLVELARQTHPSVT 87
Query: 158 YALGDRCRLFVADGT 172
+ G L +
Sbjct: 88 FHHGTITDLSDSPKR 102
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 29.1 bits (65), Expect = 1.3
Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 19/99 (19%)
Query: 87 YKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPG------AKLCMILDIIGDSG-SVT 139
+ Q + + VS N +L L G A L G VT
Sbjct: 6 FSQSEYVYGTEPNDFLVSVANQIPQGKILCLAEGEGRNACFLASL----------GYEVT 55
Query: 140 GVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAP 178
VD + LA + L Q G + ++ F +
Sbjct: 56 AVDQSSVGLAKAKQLAQ--EKGVKITTVQSNLADFDIVA 92
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 29.2 bits (66), Expect = 1.6
Identities = 14/91 (15%), Positives = 22/91 (24%), Gaps = 18/91 (19%)
Query: 128 ILDIIGDSGSVTGVDVARH------------RLAACRTLLQK-----YALGDRCRLFVAD 170
+ D I G T ++A R L + Y L + D
Sbjct: 30 VADHIAA-GHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRDGQGVYGLTEFGEQLRDD 88
Query: 171 GTTFSLAPLRLLLDPGSCNSVLQEKDDTFRE 201
L + G + E + R
Sbjct: 89 HAAGKRKWLDMNSAVGRGDLGFVELAHSIRT 119
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 29.0 bits (65), Expect = 1.9
Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 20/104 (19%)
Query: 107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVD-------VARHRLAACRTLLQ--- 156
+ D +LD+ G + L++ SVTG+D +A + +
Sbjct: 27 YLQEDDEILDIGCGSGK---ISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGG 83
Query: 157 --KYALGDRCRLFVADGT----TFSLAPLRLLLDPGSCNSVLQE 194
++ + + L D + L + DP + +++E
Sbjct: 84 KAEFKVENASSLSFHDSSFDFAVMQAF-LTSVPDPKERSRIIKE 126
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein;
ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 29.0 bits (65), Expect = 2.0
Identities = 19/107 (17%), Positives = 24/107 (22%), Gaps = 32/107 (29%)
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVD-------VARHRLAACRTLLQKYAL 160
+ VLDL G + L G V VD VAR +
Sbjct: 52 LKNPCRVLDLGGGTGK-WSLFLQERG--FEVVLVDPSKEMLEVAREKGVK------NVVE 102
Query: 161 GDRCRLFVADGT-----TFSLAPLRLLLDPGSCNSVLQEKDDTFREW 202
L G L + + D F E
Sbjct: 103 AKAEDLPFPSGAFEAVLALGDV-LSYVENK----------DKAFSEI 138
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 28.8 bits (65), Expect = 2.2
Identities = 14/91 (15%), Positives = 23/91 (25%), Gaps = 18/91 (19%)
Query: 128 ILDIIGDSGSVTGVDVARH------------RLAACRTLLQK-----YALGDRCRLFVAD 170
++D I G+ T +A R LL++ + + L D
Sbjct: 44 LVDHILA-GARTVKALAARTDTRPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGELLADD 102
Query: 171 GTTFSLAPLRLLLDPGSCNSVLQEKDDTFRE 201
A L + D R
Sbjct: 103 HPAAQRAWHDLTQAVARADISFTRLPDAIRT 133
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain,
signal transduction inhibitor nuclear protein; 1.9A
{Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Length = 169
Score = 27.9 bits (62), Expect = 3.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 2 LCTLDGEISKLPLPEAFLDFLKE 24
+ G I LPLP D+L+E
Sbjct: 142 INKCTGAIWGLPLPTRLKDYLEE 164
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 27.9 bits (62), Expect = 3.4
Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 5/71 (7%)
Query: 107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRL 166
+ VLDL G +L+ G V GVD++ + R +
Sbjct: 35 YMKKRGKVLDLACGVG-GFSFLLEDYG--FEVVGVDISEDMIRKAREYAKS--RESNVEF 89
Query: 167 FVADGTTFSLA 177
V D S
Sbjct: 90 IVGDARKLSFE 100
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent
O-methyltransferase; HET: SAH; 1.80A {Lolium perenne}
PDB: 3p9i_A* 3p9k_A*
Length = 364
Score = 28.2 bits (63), Expect = 4.1
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 5/107 (4%)
Query: 95 IDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTL 154
+ AA G +++ ++A AP + IL ++ VT + R+
Sbjct: 49 LVAAGGKSLTPTEVAAKLPSAANPEAPDM-VDRILRLLASYNVVTCLVEEGKDGRLSRS- 106
Query: 155 LQKYALGDRCRLFVADGTTFSLAPLRLLLDPGSCNSVLQEKDDTFRE 201
Y C+ + S+A L L+ D +
Sbjct: 107 ---YGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLD 150
>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral
enzyme structure; HET: SFG; 1.90A {Wesselsbron virus}
PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*
Length = 300
Score = 28.0 bits (62), Expect = 4.3
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 9/66 (13%)
Query: 86 AYKQGKIYGIDAASGAA------VSALNISAGDHVLDLCAAPGA---KLCMILDIIGDSG 136
K+G+ + S A + VLDL G +++ G
Sbjct: 51 YLKEGRTDVGISVSRGAAKIRWLHERGYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKG 110
Query: 137 SVTGVD 142
G++
Sbjct: 111 YTLGIE 116
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 27.5 bits (61), Expect = 4.7
Identities = 11/94 (11%), Positives = 22/94 (23%), Gaps = 15/94 (15%)
Query: 105 ALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRC 164
+ +++ G GV+ + R G
Sbjct: 42 VKCLLPEGRGVEIGVGTG-------RFAVPLKIKIGVEPSERMAEIARKRGVFVLKGTAE 94
Query: 165 RLFVADGT----TFSLAPLRLLLDPGSCNSVLQE 194
L + D + + + DP L+E
Sbjct: 95 NLPLKDESFDFALMVTT-ICFVDDP---ERALKE 124
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 27.7 bits (61), Expect = 4.7
Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 19/106 (17%)
Query: 102 AVSALNISAGDHVLDLCAAPG------AKLCMILDIIGDSGSVTGVDVARHRLAACRTLL 155
A D V+D G A V +D+ ++A R
Sbjct: 70 AGRVSQSFKCDVVVDAFCGVGGNTIQFALTG---------MRVIAIDIDPVKIALARNNA 120
Query: 156 QKYALGDRCRLFVADGTTF--SLAPLRLLLDP--GSCNSVLQEKDD 197
+ Y + D+ D L + L P G + E D
Sbjct: 121 EVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGPDYATAETFD 166
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 27.8 bits (62), Expect = 5.2
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 15/77 (19%)
Query: 17 AFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSG----F 72
FL E G +P+V + ++ R+ + + ++ + V+++ F
Sbjct: 374 GLTRFLLELGCEPTVILSHNANKRW-------QKAMNKMLDASPYGRDSEVFINCDLWHF 426
Query: 73 YSL----PPDIKIATSM 85
SL PD I S
Sbjct: 427 RSLMFTRQPDFMIGNSY 443
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor,
growth regulation, signal transduction, SH2 domain,
nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1
d.93.1.1
Length = 187
Score = 27.1 bits (60), Expect = 5.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 3 CTLDGEISKLPLPEAFLDFLKE 24
CT I LP+P + +LKE
Sbjct: 150 CTTYDGIDALPIPSSMKLYLKE 171
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 27.5 bits (61), Expect = 5.9
Identities = 22/110 (20%), Positives = 30/110 (27%), Gaps = 22/110 (20%)
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSG-SVTGVDVARHRLAACRTLLQKYA 159
A + A+ + VLDL G L L D G GVD R + A R
Sbjct: 43 AILLAILGRQPERVLDLGCGEGW-LLRAL---ADRGIEAVGVDGDRTLVDAAR----AAG 94
Query: 160 LGDRCRLFVADGTTFSLAPLRLLLDPGS-----CNSVLQEKD--DTFREW 202
G+ A + N L +D +
Sbjct: 95 AGEVHLASYAQLAE------AKVPVGKDYDLICANFALLHQDIIELLSAM 138
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 27.3 bits (60), Expect = 6.0
Identities = 11/73 (15%), Positives = 16/73 (21%), Gaps = 6/73 (8%)
Query: 108 ISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQK---YALGDRC 164
++ VL+ G D + L R Y +
Sbjct: 46 LTPQTRVLEAGCGHGPDAARFGPQAAR---WAAYDFSPELLKLARANAPHADVYEWNGKG 102
Query: 165 RLFVADGTTFSLA 177
L G F L
Sbjct: 103 ELPAGLGAPFGLI 115
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 27.3 bits (61), Expect = 7.4
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 18/75 (24%)
Query: 128 ILDIIGDSGSVTGVDVARH------------RLAACRTLLQK----YALGDRCRLFVADG 171
+ I G + +A+ + K Y L +F+
Sbjct: 31 VFTAISQ-GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTKQAEGYRLTSDSAMFLDRQ 89
Query: 172 TTFSLAP-LRLLLDP 185
+ F + + LL P
Sbjct: 90 SKFYVGDAIEFLLSP 104
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog;
NP_348457.1, putative cystathionine beta-lyase involved
in A resistance; HET: LLP MSE; 2.00A {Clostridium
acetobutylicum}
Length = 427
Score = 27.4 bits (61), Expect = 7.4
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 92 IYGIDAASG-AAVSAL---NISAGDHVLDLCAAPGAKLCMILDIIGDSGS 137
+G A+ A N+ D ++ +C P L DIIG S
Sbjct: 93 FVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTL---HDIIGMDDS 139
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 27.3 bits (61), Expect = 7.8
Identities = 13/104 (12%), Positives = 29/104 (27%), Gaps = 19/104 (18%)
Query: 42 IRLKTGN-EADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASG 100
+L G +++ +KV+ +G + I G DA+
Sbjct: 461 SQLALGQKPMTADDVLQY---GADKVIIATG--ARWNTDGTNCL---THDPIPGADASLP 512
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVA 144
++ + G G ++ I+ +A
Sbjct: 513 DQLTPEQVMDGK------KKIGKRVV----ILNADTYFMAPSLA 546
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine
BEAT-lyase, aluminium resistance protein, Q81A77_baccr,
NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Length = 431
Score = 27.0 bits (60), Expect = 7.9
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 92 IYGIDAASG-AAVSAL---NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTG 140
+ SG A+S + GD +L + P + +I+G G G
Sbjct: 84 LVRPQIISGTHAISTALFGILRPGDELLYITGKPY---DTLEEIVGVRGKGVG 133
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B*
1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B*
3k1a_B* 3min_B*
Length = 523
Score = 27.4 bits (61), Expect = 8.2
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 15/77 (19%)
Query: 17 AFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSG----F 72
+ FL E G +P + R+ + ++ I A V++
Sbjct: 378 GLVKFLLELGCEPVHILCHNGNKRW-------KKAVDAILAASPYGKNATVYIGKDLWHL 430
Query: 73 YSL----PPDIKIATSM 85
SL PD I S
Sbjct: 431 RSLVFTDKPDFMIGNSY 447
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 26.5 bits (59), Expect = 8.2
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
+ D +D+ G + L++ G V +D ++ LQ++ L
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGG---VTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGL 80
Query: 161 GDRCRLFVAD 170
GD L D
Sbjct: 81 GDNVTLMEGD 90
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 27.2 bits (61), Expect = 8.4
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 7/44 (15%)
Query: 76 PPDIKIATSMAYKQGKIYGIDAA-----SGAAVSALNISAGDHV 114
P D K K ++ G DA G V+ N GD V
Sbjct: 46 PVDTKQRLMDVSKAPRVLGFDAIGVVESVGNEVTMFNQ--GDIV 87
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 26.9 bits (60), Expect = 9.8
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 17/74 (22%)
Query: 128 ILDIIGDSGSVTGVDVARH------------RLAACRTLLQ----KYALGDRCRLFVADG 171
+ D + D G T ++A RL A R +++ ++AL D+ +D
Sbjct: 47 VADHLVD-GPRTPAELAAATGTDADALRRVLRLLAVRDVVRESDGRFALTDKGAALRSDS 105
Query: 172 TTFSLAPLRLLLDP 185
+ A + + D
Sbjct: 106 PVPARAGILMFTDT 119
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP;
3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 458
Score = 26.9 bits (60), Expect = 9.8
Identities = 12/92 (13%), Positives = 24/92 (26%), Gaps = 26/92 (28%)
Query: 17 AFLDFLKENGLDPSVYSAADSTPRYIRL-------------KTGNEADLEEIEAELKCKL 63
A F+ E G P ++ + K E D ++ +K
Sbjct: 326 ALSKFIIELGAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIK--- 382
Query: 64 EKVVWLSGFYSLPPDIKIATSMAYKQGKIYGI 95
+ D+ I+ + + I
Sbjct: 383 ----------NEGVDLLISNTYGKFIAREENI 404
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.400
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,005,084
Number of extensions: 309690
Number of successful extensions: 930
Number of sequences better than 10.0: 1
Number of HSP's gapped: 908
Number of HSP's successfully gapped: 121
Length of query: 313
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 220
Effective length of database: 4,105,140
Effective search space: 903130800
Effective search space used: 903130800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)