RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 021397
(313 letters)
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 48.9 bits (115), Expect = 3e-07
Identities = 45/196 (22%), Positives = 71/196 (36%), Gaps = 27/196 (13%)
Query: 39 PRYIR---LKT-----------------GNEADLEEIEAELKCKLEKVVWLSGFYSLPPD 78
PR++R LKT G + L+++ A + P
Sbjct: 3 PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQ 62
Query: 79 IKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSV 138
+ Y+ G + D AS L+ G HV+D CAAPG K + ++ + G +
Sbjct: 63 TDLHEHPLYRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKI 122
Query: 139 TGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPLR------LLLDPGSCNSVL 192
D+ RLA+ TLL + + C L D S + R +LLDP S +
Sbjct: 123 FAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGM 181
Query: 193 QEKDDTFREWTSRIPW 208
+ + P
Sbjct: 182 PSRQLEEPGAGTPSPV 197
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 250
Score = 44.7 bits (105), Expect = 5e-06
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 3/100 (3%)
Query: 71 GFYSLPPDIKIAT-SMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
F + I IDA+ + + G +L++ G IL
Sbjct: 47 SFIVSDFSPMYFGRVIRRNTQIISEIDASY--IIMRCGLRPGMDILEVGVGSGNMSSYIL 104
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVA 169
+ G++T V+ L L ++ R +
Sbjct: 105 YALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS 144
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 313
Score = 44.6 bits (104), Expect = 8e-06
Identities = 41/221 (18%), Positives = 81/221 (36%), Gaps = 17/221 (7%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYIR---LKTGNEADLEEIEAELKCKLEKVVWLS 70
E + + PR R LK + ++ + + + ++V W
Sbjct: 26 WGERAIRIAEAMEKPL---------PRCFRVNTLKISVQDLVKRLNKK-GFQFKRVPWAK 75
Query: 71 -GFYSLPPDIKIATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
GF I ++ + G IY +A+S AL+ G+ V D+ AAPG K +
Sbjct: 76 EGFCLTREPFSITSTPEFLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLA 135
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCRLFVADGTTFSLAPL--RLLLDPGS 187
++ + G + DV +RL R L + + + + L ++LLD
Sbjct: 136 QLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA-P 194
Query: 188 CNSVLQEKDDTFREWTSRIPWKERKRAVKARENAASKAIVR 228
C + R+W + + + ++ R +++
Sbjct: 195 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLK 235
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 43.6 bits (102), Expect = 1e-05
Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 3/94 (3%)
Query: 71 GFYSLPPDIK-IATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMIL 129
+ P ++ M + D +S ++I+ GD VL+ + G +
Sbjct: 60 QYMLRRPALEDYVVLMKRGTAITFPKDI--NMILSMMDINPGDTVLEAGSGSGGMSLFLS 117
Query: 130 DIIGDSGSVTGVDVARHRLAACRTLLQKYALGDR 163
+G G V +V + + + + +
Sbjct: 118 KAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWK 151
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 227
Score = 42.0 bits (98), Expect = 3e-05
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156
AA + I G VL L A G + DI+G G + G++ + L +++
Sbjct: 60 AAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE 119
Query: 157 KY 158
+
Sbjct: 120 ER 121
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 34.3 bits (78), Expect = 0.009
Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
Query: 97 AASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQ 156
AA L + + VL L AA G + + D I D G + V+ + L++
Sbjct: 43 AAMILKGHRLKLRGDERVLYLGAASGTTVSHLAD-IVDEGIIYAVEYSAKPFEKLLELVR 101
Query: 157 KY 158
+
Sbjct: 102 ER 103
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT)
{Archaeon Methanobacterium thermoautotrophicum [TaxId:
145262]}
Length = 186
Score = 31.7 bits (71), Expect = 0.063
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
+ D +D+ G + G V +D ++ LQ++ L
Sbjct: 24 LIMCLAEPGKNDVAVDVGCGTGGVTLE---LAGRVRRVYAIDRNPEAISTTEMNLQRHGL 80
Query: 161 GDRCRLFVADG 171
GD L D
Sbjct: 81 GDNVTLMEGDA 91
>d2izva1 a.271.1.1 (A:386-429) Suppressor of cytokine signaling 4,
SOCS-4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 44
Score = 28.9 bits (65), Expect = 0.077
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 3 CTLDGEISKLPLPEAFLDFLKE 24
CT I LP+P + +LKE
Sbjct: 15 CTTYDGIDALPIPSSMKLYLKE 36
>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate
synthase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 410
Score = 32.1 bits (73), Expect = 0.091
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 20 DFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDI 79
+F +EN LD + +T RY+ + G +E + +K + + P
Sbjct: 221 NFKEENALDKVIVLWTANTERYVEVSPGVNDTMENLLQSIK---------NDHEEIAPST 271
Query: 80 KIATSMAYKQGKIYGIDAASGAAVSALNISAGDH 113
A + +G Y + V L A
Sbjct: 272 IFAA-ASILEGVPYINGSPQNTFVPGLVQLAEHE 304
>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC
{Escherichia coli [TaxId: 562]}
Length = 354
Score = 31.7 bits (70), Expect = 0.11
Identities = 7/50 (14%), Positives = 17/50 (34%)
Query: 11 KLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELK 60
+ A L + G+ + S +R+ G + + + L+
Sbjct: 301 RFKASSAVFKSLWDQGIILRDQNKQPSLSGCLRITVGTREESQRVIDALR 350
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 31.5 bits (70), Expect = 0.11
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 100 GAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
G + A VLD+ A G + + GVD +
Sbjct: 6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQE---CIGVDATKE 49
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 31.6 bits (71), Expect = 0.11
Identities = 13/114 (11%), Positives = 32/114 (28%), Gaps = 3/114 (2%)
Query: 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR 165
+ GD +DL + G + + G ++ ++ L RC+
Sbjct: 212 CQLKKGDTFMDLGSGVG-NCVVQAALECGCALSFGCEIMDDASDLTILQYEE--LKKRCK 268
Query: 166 LFVADGTTFSLAPLRLLLDPGSCNSVLQEKDDTFREWTSRIPWKERKRAVKARE 219
L+ + + +D ++ + D +K +
Sbjct: 269 LYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQT 322
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus
cereus [TaxId: 1396]}
Length = 281
Score = 31.4 bits (70), Expect = 0.12
Identities = 7/43 (16%), Positives = 18/43 (41%)
Query: 104 SALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARH 146
+ I+ H++D G +++ ++ + TG+D
Sbjct: 21 TVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGET 63
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase
{Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}
Length = 252
Score = 30.7 bits (68), Expect = 0.19
Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 2/65 (3%)
Query: 106 LNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGDRCR 165
L GD VLDL G L G GVD+A + R + +
Sbjct: 20 LYTKRGDSVLDLGCGKGGDLLKYER--AGIGEYYGVDIAEVSINDARVRARNMKRRFKVF 77
Query: 166 LFVAD 170
D
Sbjct: 78 FRAQD 82
>d2c9wa1 a.271.1.1 (A:149-198) Suppressor of cytokine signaling 2,
SOCS-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 27.3 bits (61), Expect = 0.37
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 2 LCTLDGEISKLPLPEAFLDFLKE 24
+ G I LPLP D+L+E
Sbjct: 23 INKCTGAIWGLPLPTRLKDYLEE 45
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus
halodurans [TaxId: 86665]}
Length = 231
Score = 28.5 bits (62), Expect = 0.86
Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 3/49 (6%)
Query: 103 VSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAAC 151
+ + + VLD+ G + V D+ L
Sbjct: 8 MQIAALKGNEEVLDVATGGGHVANAFAPFVKK---VVAFDLTEDILKVA 53
>d1vkoa1 c.2.1.3 (A:11-314,A:429-521) Myo-inositol 1-phosphate
synthase {Caenorhabditis elegans [TaxId: 6239]}
Length = 397
Score = 28.6 bits (64), Expect = 1.0
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 20 DFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAELK 60
F +E+ L+ + +T RY ++ G A +EI ++
Sbjct: 211 KFKQEHELECVIVLWTANTERYTDVRQGLNATADEIMESIR 251
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 224
Score = 27.5 bits (60), Expect = 1.7
Identities = 13/87 (14%), Positives = 28/87 (32%)
Query: 82 ATSMAYKQGKIYGIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGV 141
S+ ++ A + + G LD+ + G ++G +G V G+
Sbjct: 48 PQSIGFQATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGI 107
Query: 142 DVARHRLAACRTLLQKYALGDRCRLFV 168
D + + ++K V
Sbjct: 108 DHIKELVDDSVNNVRKDDPTLLSSGRV 134
>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase
domain {Thermotoga maritima [TaxId: 2336]}
Length = 192
Score = 27.1 bits (59), Expect = 2.3
Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 7/107 (6%)
Query: 102 AVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALG 161
+ L +LD G IL+ + G+DV L L++++
Sbjct: 15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFSDR 73
Query: 162 DRCRLFVADGTTFSLAPLR------LLLDPGSCNSVLQEKDDTFREW 202
F L L +L+D G L+ ++
Sbjct: 74 VSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENL 120
>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia
coli [TaxId: 562]}
Length = 385
Score = 27.3 bits (59), Expect = 2.4
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 6 DGEISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTG 47
D + + + D + GL ++Y P +K G
Sbjct: 38 DKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEG 79
>d1qhba_ a.111.1.2 (A:) Haloperoxidase (bromoperoxidase) {Red algae
(Corallina officinalis) [TaxId: 35170]}
Length = 595
Score = 27.2 bits (60), Expect = 3.0
Identities = 6/28 (21%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 17 AFLDFLK-ENGLDPSVYSAADSTPRYIR 43
FL ++ D + + + R IR
Sbjct: 293 DLKVFLDVQDAADFRGFESYEPGARLIR 320
>d1l0oc_ a.4.13.2 (C:) SigmaF {Bacillus stearothermophilus [TaxId:
1422]}
Length = 57
Score = 24.6 bits (54), Expect = 3.0
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 40 RYIRLKTGNEADLEEIEAELKCKLEKVV 67
+ G + EI L E VV
Sbjct: 22 DELSKTRGRAPTVTEIADHLGISPEDVV 49
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli
[TaxId: 562]}
Length = 245
Score = 26.5 bits (57), Expect = 4.3
Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYAL 160
L + G +LDL + G LC G + TG+D++ A + ++ +
Sbjct: 24 TLGRVLRMKPGTRILDLGSGSGEMLCTWARDHG--ITGTGIDMSSLFTAQAKRRAEELGV 81
Query: 161 GDRCRLFV 168
+R
Sbjct: 82 SERVHFIH 89
>d1qi9a_ a.111.1.2 (A:) Haloperoxidase (bromoperoxidase)
{Ascophyllum nodosum [TaxId: 52969]}
Length = 555
Score = 26.8 bits (59), Expect = 4.4
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 17 AFLDFLK-ENGLDPSVYSAADSTPRYIR 43
F ++L +NG P+ D R++R
Sbjct: 238 DFDEWLNIQNGGPPAGPELLDDELRFVR 265
>d1xoua_ a.231.1.1 (A:) Secreted protein EspA {Escherichia coli
[TaxId: 562]}
Length = 160
Score = 25.6 bits (56), Expect = 5.5
Identities = 7/54 (12%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 6 DGEISKLPLPEAFLDFLKENGLDPSVYSAADSTPRYIRLKTGNEADLEEIEAEL 59
+ +K LP+ + ++ + D ++ + + DL+ ++A +
Sbjct: 65 SDKNAKAQLPDEVISYINDPRNDITISGIDNINAQL------GAGDLQTVKAAI 112
>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase
{Acinetobacter calcoaceticus [TaxId: 471]}
Length = 174
Score = 25.6 bits (55), Expect = 6.1
Identities = 12/61 (19%), Positives = 25/61 (40%)
Query: 94 GIDAASGAAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRT 153
GI +GA ++AL ++ + A ++ + + + VD+ RL +
Sbjct: 12 GIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ 71
Query: 154 L 154
L
Sbjct: 72 L 72
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 309
Score = 25.9 bits (56), Expect = 6.3
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 4/65 (6%)
Query: 107 NISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACRTLLQKYALGD-RCR 165
VL+L G + VT VD ++ + + L R
Sbjct: 129 TADRPLKVLNLFGYTGVASLVAAA---AGAEVTHVDASKKAIGWAKENQVLAGLEQAPIR 185
Query: 166 LFVAD 170
D
Sbjct: 186 WICED 190
>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl
O-methyltransferase {Thermotoga maritima [TaxId: 2336]}
Length = 213
Score = 25.7 bits (55), Expect = 6.4
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 16 EAFLDFLKENGLDPSVYSAADSTPR 40
E LK+ G+ + A PR
Sbjct: 3 EKLFWILKKYGVSDHIAKAFLEIPR 27
>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga
maritima [TaxId: 2336]}
Length = 359
Score = 25.8 bits (55), Expect = 7.1
Identities = 5/41 (12%), Positives = 13/41 (31%)
Query: 1 MLCTLDGEISKLPLPEAFLDFLKENGLDPSVYSAADSTPRY 41
++ T K + L E + ++ + P +
Sbjct: 32 LVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSF 72
>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 229
Score = 25.8 bits (55), Expect = 7.5
Identities = 4/43 (9%), Positives = 10/43 (23%), Gaps = 2/43 (4%)
Query: 110 AGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAACR 152
G VL++ + + ++ R
Sbjct: 53 KGGRVLEVGFGMAIAASKVQE--APIDEHWIIECNDGVFQRLR 93
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 316
Score = 25.9 bits (56), Expect = 7.5
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 101 AAVSALNISAGDHVLDLCAAPGAKLCMILDIIGDSGSVTGVDVARHRLAAC 151
+ ++ VLD+ + G LCM G V G++ + A
Sbjct: 24 SMFHNRHLFKDKVVLDVGSGTGI-LCMFAAKAGAR-KVIGIECSSISDYAV 72
>d2i9ia1 c.51.6.1 (A:51-271) Hypothetical protein HP0492
{Helicobacter pylori [TaxId: 210]}
Length = 221
Score = 25.7 bits (56), Expect = 7.6
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 45 KTGNEADLEEIEAELKCKLEKVVWLSGFYSLPPDIKIATSMAYKQGKIYGIDAASG 100
+ D + + A+ K K+ V+ L G+ + D+K+ +D +SG
Sbjct: 69 QVLRFQDEKALNAQDKRKIFSVLDLKGWVGILEDLKMNLKDPNNPNLDTLVDQSSG 124
>d2p41a1 c.66.1.25 (A:8-264) An RNA cap
(nucleoside-2'-O-)-methyltransferase domain of RNA
polymerase NS5 {Dengue virus 2 [TaxId: 11060]}
Length = 257
Score = 25.6 bits (56), Expect = 8.1
Identities = 6/39 (15%), Positives = 12/39 (30%), Gaps = 3/39 (7%)
Query: 107 NISAGDHVLDLCAAPGA---KLCMILDIIGDSGSVTGVD 142
++ V+DL G + ++ G G
Sbjct: 63 LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGP 101
>d1rp3a1 a.4.13.1 (A:87-163) Sigma factor sigma-28 (FliA) {Aquifex
aeolicus [TaxId: 63363]}
Length = 77
Score = 24.0 bits (52), Expect = 8.7
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 40 RYIRLKTGNEADLEEIEAELKCKLEKV 66
++ K G E EE+ EL E++
Sbjct: 17 EKLKEKLGREPTDEEVAKELGISTEEL 43
>d1yira2 d.41.2.2 (A:4-144) Nicotinate phosphoribosyltransferase,
N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Length = 141
Score = 25.0 bits (55), Expect = 9.4
Identities = 5/29 (17%), Positives = 8/29 (27%)
Query: 14 LPEAFLDFLKENGLDPSVYSAADSTPRYI 42
L F+ FL +P +
Sbjct: 81 LAPDFIRFLGLFRFNPRYVQTGIENDEFF 109
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.400
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,206,041
Number of extensions: 56815
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 35
Length of query: 313
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,240,546
Effective search space: 282844488
Effective search space used: 282844488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)