Query 021398
Match_columns 313
No_of_seqs 149 out of 1130
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 02:38:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021398.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021398hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1292 Xanthine/uracil transp 99.9 4.5E-23 9.7E-28 205.7 8.1 100 211-310 1-101 (510)
2 COG2233 UraA Xanthine/uracil p 99.8 4.3E-20 9.3E-25 183.5 10.4 95 210-304 4-102 (451)
3 PRK11412 putative uracil/xanth 99.8 4.5E-20 9.7E-25 181.9 9.9 80 222-301 8-87 (433)
4 PRK10720 uracil transporter; P 99.8 2.3E-18 4.9E-23 168.5 9.4 81 210-301 2-83 (428)
5 TIGR00801 ncs2 uracil-xanthine 99.7 2.1E-17 4.7E-22 160.4 9.8 88 218-306 1-91 (415)
6 TIGR03616 RutG pyrimidine util 99.7 2.9E-17 6.3E-22 161.0 10.4 80 211-301 19-99 (429)
7 TIGR03173 pbuX xanthine permea 99.6 2.2E-15 4.7E-20 145.1 6.1 78 228-305 1-82 (406)
8 PF00860 Xan_ur_permease: Perm 99.5 3.2E-14 7E-19 136.5 6.6 76 222-298 1-77 (389)
9 TIGR00843 benE benzoate transp 97.0 0.0035 7.7E-08 62.6 9.0 75 224-300 23-97 (395)
10 COG3135 BenE Uncharacterized p 76.5 7.5 0.00016 39.6 6.7 68 223-291 21-88 (402)
11 PF03594 BenE: Benzoate membra 71.0 18 0.00038 36.8 7.8 67 224-291 7-73 (378)
12 PHA03357 Alkaline exonuclease; 52.5 5.3 0.00012 32.5 0.3 33 41-73 11-43 (81)
13 TIGR00882 2A0105 oligosacchari 49.1 83 0.0018 29.4 7.7 65 222-286 5-73 (396)
14 PRK05122 major facilitator sup 39.7 99 0.0021 28.7 6.6 64 225-288 18-88 (399)
15 PF05992 SbmA_BacA: SbmA/BacA- 37.9 86 0.0019 31.3 6.2 59 227-285 126-189 (315)
16 TIGR00711 efflux_EmrB drug res 36.0 1.6E+02 0.0036 27.9 7.6 57 219-275 255-311 (485)
17 PRK12382 putative transporter; 35.7 1.1E+02 0.0024 28.4 6.3 58 230-287 23-87 (392)
18 PRK09528 lacY galactoside perm 33.0 2.3E+02 0.005 26.8 8.1 68 219-286 10-81 (420)
19 PRK03893 putative sialic acid 26.0 2.7E+02 0.0058 26.8 7.2 45 242-287 43-91 (496)
20 TIGR02230 ATPase_gene1 F0F1-AT 25.9 40 0.00087 28.3 1.5 40 233-272 45-87 (100)
21 PRK11043 putative transporter; 25.4 2.5E+02 0.0055 26.1 6.8 49 236-284 20-74 (401)
22 COG2252 Xanthine/uracil/vitami 25.2 1.9E+02 0.0042 30.1 6.4 73 212-289 9-82 (436)
23 PLN00028 nitrate transmembrane 24.9 3.2E+02 0.0069 27.0 7.7 42 246-287 62-107 (476)
24 PF10011 DUF2254: Predicted me 23.3 1.6E+02 0.0034 29.2 5.3 47 228-274 93-143 (371)
25 PF11821 DUF3341: Protein of u 23.0 1.5E+02 0.0033 26.9 4.7 62 224-289 65-127 (173)
26 PF14246 TetR_C_7: AefR-like t 22.6 2.1E+02 0.0046 19.8 4.5 38 226-263 9-46 (55)
27 PF04955 HupE_UreJ: HupE / Ure 22.4 1.1E+02 0.0024 27.6 3.8 30 251-284 75-104 (180)
28 TIGR00886 2A0108 nitrite extru 22.4 3.8E+02 0.0082 24.2 7.1 47 242-288 24-74 (366)
29 TIGR00891 2A0112 putative sial 22.2 4.2E+02 0.0091 24.0 7.4 42 247-288 39-84 (405)
30 TIGR00893 2A0114 d-galactonate 21.9 5E+02 0.011 22.9 7.6 43 239-281 235-281 (399)
31 TIGR00427 membrane protein, Ma 21.8 4.2E+02 0.0092 24.2 7.4 59 231-289 13-79 (201)
32 PRK11652 emrD multidrug resist 21.5 2.9E+02 0.0062 25.7 6.4 42 246-287 34-79 (394)
33 PRK11663 regulatory protein Uh 21.3 3E+02 0.0066 26.4 6.6 39 241-279 265-303 (434)
34 TIGR00886 2A0108 nitrite extru 21.2 3.7E+02 0.008 24.3 6.8 45 239-283 245-293 (366)
35 TIGR00900 2A0121 H+ Antiporter 20.7 4.4E+02 0.0096 23.3 7.1 37 240-276 232-268 (365)
36 PRK15403 multidrug efflux syst 20.5 2.9E+02 0.0062 26.6 6.3 85 220-305 10-104 (413)
37 PRK11085 magnesium/nickel/coba 20.1 2E+02 0.0043 28.3 5.1 22 232-253 258-279 (316)
No 1
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=99.88 E-value=4.5e-23 Score=205.70 Aligned_cols=100 Identities=44% Similarity=0.848 Sum_probs=96.5
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHhcCCCChHHH-HHHHHHHHHHHHHHHHHHHHhCCccceeeecc
Q 021398 211 LRFGLRDNRGWVPVIYYGLQHFLSLAGSLIFIPLIIVPAMGGTDKDT-ATVISTMLLVTGVTTTLQSYFGTRLPLVQGSS 289 (313)
Q Consensus 211 l~YgVDDkPP~~~tllLGLQHvLaM~a~lI~VPLIIa~alGLd~e~t-a~LISaaLfvSGIaTLLQs~~GsRLPIVqGpS 289 (313)
+.|+++|.|||...+++||||++.|+++++++|++++.++|.++++. +.+||+.||++||+||+|++||+|||++||+|
T Consensus 1 l~y~i~d~P~w~~~i~lgfQhyl~~lg~~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~S 80 (510)
T KOG1292|consen 1 LHYCINDNPPWPEIILLGFQHYLVCLGTTVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPS 80 (510)
T ss_pred CccCCCCCCCchHHHHhccchHHHHhhhhhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccc
Confidence 46999999999999999999999999999999999999999999888 99999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhccCCCccC
Q 021398 290 FVYLAPALVIINAREYRNLSE 310 (313)
Q Consensus 290 FAfL~paiaIa~~~g~~~lt~ 310 (313)
|+|++|++++.+++.|.+.++
T Consensus 81 fafl~p~~~i~~~~~~~~~~~ 101 (510)
T KOG1292|consen 81 FAFLPPALAIISLPRFTCITT 101 (510)
T ss_pred eehhhHHHHHHhccccCCCCC
Confidence 999999999999999998663
No 2
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=99.82 E-value=4.3e-20 Score=183.49 Aligned_cols=95 Identities=33% Similarity=0.494 Sum_probs=89.3
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCcccee
Q 021398 210 ELRFGLRDNRGWVPVIYYGLQHFLSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSY----FGTRLPLV 285 (313)
Q Consensus 210 ~l~YgVDDkPP~~~tllLGLQHvLaM~a~lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~GsRLPIV 285 (313)
...+.+|+++|+.+++++||||+|+||+++|++|++++.+++++++|+++|||++||+|||+|++|++ +|+|+|++
T Consensus 4 ~~~~~~~~~~~~~~~~~lglQH~lamfg~~V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~ 83 (451)
T COG2233 4 LIYVLVDERLPLGKLLLLGLQHLLAMFGATVLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSY 83 (451)
T ss_pred cccCcccccCChHHHHHHHHHHHHHHHhcchHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCee
Confidence 34456888999999999999999999999999999999999999999999999999999999999997 67799999
Q ss_pred eecchhhHHHHHHHHhhcc
Q 021398 286 QGSSFVYLAPALVIINARE 304 (313)
Q Consensus 286 qGpSFAfL~paiaIa~~~g 304 (313)
||+||+|++|++++..+.+
T Consensus 84 lG~sFafi~p~i~~~~~~g 102 (451)
T COG2233 84 LGSSFAFVAPMIAIGGTTG 102 (451)
T ss_pred EechHHHHHHHHHHHhccC
Confidence 9999999999999998755
No 3
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=99.81 E-value=4.5e-20 Score=181.88 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeecchhhHHHHHHHHh
Q 021398 222 VPVIYYGLQHFLSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSYFGTRLPLVQGSSFVYLAPALVIIN 301 (313)
Q Consensus 222 ~~tllLGLQHvLaM~a~lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~~GsRLPIVqGpSFAfL~paiaIa~ 301 (313)
++++++||||+++|++++|++|+++++++|+++++++++||++||+|||+|+||+++|+|||++||+||+||+|+++++.
T Consensus 8 ~~~~~lglQhvl~m~~~~i~vPliva~a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~ 87 (433)
T PRK11412 8 RESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITL 87 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999973
No 4
>PRK10720 uracil transporter; Provisional
Probab=99.75 E-value=2.3e-18 Score=168.51 Aligned_cols=81 Identities=23% Similarity=0.530 Sum_probs=74.4
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh-CCccceeeec
Q 021398 210 ELRFGLRDNRGWVPVIYYGLQHFLSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSYF-GTRLPLVQGS 288 (313)
Q Consensus 210 ~l~YgVDDkPP~~~tllLGLQHvLaM~a~lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~~-GsRLPIVqGp 288 (313)
+++|++||+||+.+++++||||+++|++++|++|+++ |+++++ +||+|||+|++|+++ |.|||++||+
T Consensus 2 ~~~~~~~~~~p~~~~~~lglQhvl~m~~~~i~~Pli~----gl~~~~-------~l~~sGi~TliQ~~~~g~rlP~~~G~ 70 (428)
T PRK10720 2 RRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPILF----HINPAT-------VLLFNGIGTLLYLFICKGKIPAYLGS 70 (428)
T ss_pred CcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc----CCCHHH-------HHHHHHHHHHHHHHhccCccceEEeC
Confidence 4679999999999999999999999999999999987 788753 789999999999985 5699999999
Q ss_pred chhhHHHHHHHHh
Q 021398 289 SFVYLAPALVIIN 301 (313)
Q Consensus 289 SFAfL~paiaIa~ 301 (313)
||+|++|+++++.
T Consensus 71 sfa~i~~~~~~~~ 83 (428)
T PRK10720 71 SFAFISPVLLLLP 83 (428)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999875
No 5
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=99.71 E-value=2.1e-17 Score=160.37 Aligned_cols=88 Identities=28% Similarity=0.470 Sum_probs=81.4
Q ss_pred CCChhHHHHHHHHHHHHHhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhC---CccceeeecchhhHH
Q 021398 218 NRGWVPVIYYGLQHFLSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSYFG---TRLPLVQGSSFVYLA 294 (313)
Q Consensus 218 kPP~~~tllLGLQHvLaM~a~lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~~G---sRLPIVqGpSFAfL~ 294 (313)
+||+++++++||||+++|+++++++|++++.++ ++++|+++++|+++|+|||+|++|+++. .|||++||+||+|++
T Consensus 1 ~~~~~~~~~lglQh~l~~~~~~i~~p~iv~~~~-l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~ 79 (415)
T TIGR00801 1 RPPFLQTLVLGLQHLLAMFGGTVLVPLLVGLAP-LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVS 79 (415)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHH
Confidence 689999999999999999999999999999999 9999999999999999999999999754 347999999999999
Q ss_pred HHHHHHhhccCC
Q 021398 295 PALVIINAREYR 306 (313)
Q Consensus 295 paiaIa~~~g~~ 306 (313)
+++++....+++
T Consensus 80 ~~~~~~~~~~~~ 91 (415)
T TIGR00801 80 PMIAIGSGLGIP 91 (415)
T ss_pred HHHHHHhccCHH
Confidence 999988765554
No 6
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=99.71 E-value=2.9e-17 Score=160.99 Aligned_cols=80 Identities=24% Similarity=0.389 Sum_probs=74.3
Q ss_pred cccccCCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH-HhCCccceeeecc
Q 021398 211 LRFGLRDNRGWVPVIYYGLQHFLSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQS-YFGTRLPLVQGSS 289 (313)
Q Consensus 211 l~YgVDDkPP~~~tllLGLQHvLaM~a~lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs-~~GsRLPIVqGpS 289 (313)
..|++||+||+.+++++|+||+++|+++++++|+++ |++++ ++||+|||+|+||+ ++|+|||++||+|
T Consensus 19 ~~~~~d~~~p~~~~~~~GlQh~lam~~~~v~~Plil----gl~~~-------~tl~~sGi~TllQ~~~~G~rlP~v~G~s 87 (429)
T TIGR03616 19 HPVAPDERLPAAQTIVMGLQHAVAMFGATVLMPLLM----GFDPN-------LTILMSGIGTLLFFLITGGRVPSYLGSS 87 (429)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCHh-------HHHHHHHHHHHHHHHHhCCCceeEEcCc
Confidence 779999999999999999999999999999999997 58866 57999999999997 5899999999999
Q ss_pred hhhHHHHHHHHh
Q 021398 290 FVYLAPALVIIN 301 (313)
Q Consensus 290 FAfL~paiaIa~ 301 (313)
|+|+++++++..
T Consensus 88 f~f~~~~~~~~~ 99 (429)
T TIGR03616 88 AAFVGAVIAATG 99 (429)
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 7
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=99.57 E-value=2.2e-15 Score=145.08 Aligned_cols=78 Identities=38% Similarity=0.610 Sum_probs=73.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH----HhCCccceeeecchhhHHHHHHHHhhc
Q 021398 228 GLQHFLSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQS----YFGTRLPLVQGSSFVYLAPALVIINAR 303 (313)
Q Consensus 228 GLQHvLaM~a~lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs----~~GsRLPIVqGpSFAfL~paiaIa~~~ 303 (313)
|+||+++|+++++++|++++.++|+|++++..++++++|++||+|++|+ .+|+|||+++|+||+|+++++++....
T Consensus 1 ~~Qh~l~~~~~~i~~p~i~~~a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~~ 80 (406)
T TIGR03173 1 GLQHVLAMYAGAVAVPLIVGGALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAGG 80 (406)
T ss_pred CccchHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhhh
Confidence 6899999999999999999999999999999999999999999999998 479999999999999999999887654
Q ss_pred cC
Q 021398 304 EY 305 (313)
Q Consensus 304 g~ 305 (313)
+|
T Consensus 81 ~~ 82 (406)
T TIGR03173 81 GL 82 (406)
T ss_pred hH
Confidence 44
No 8
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=99.49 E-value=3.2e-14 Score=136.51 Aligned_cols=76 Identities=45% Similarity=0.722 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH-hCCccceeeecchhhHHHHHH
Q 021398 222 VPVIYYGLQHFLSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSY-FGTRLPLVQGSSFVYLAPALV 298 (313)
Q Consensus 222 ~~tllLGLQHvLaM~a~lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~-~GsRLPIVqGpSFAfL~paia 298 (313)
++.+++||||+++|+..++++|++++.++|+ ++++++++++++|+|||+|++|++ +|+|||+++|+||+|+.....
T Consensus 1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~-~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~~~~~~~~ 77 (389)
T PF00860_consen 1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGL-DADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFAFIFAFMI 77 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTS------------HHHHHHHHHHHHHHHHHHTTT-----EEE-GGGHHHHHG
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHhhcccc-cchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchhhhhhhhc
Confidence 4789999999999999999999999999999 888889999999999999999999 999999999999999994433
No 9
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=96.97 E-value=0.0035 Score=62.64 Aligned_cols=75 Identities=16% Similarity=0.032 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeecchhhHHHHHHHH
Q 021398 224 VIYYGLQHFLSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSYFGTRLPLVQGSSFVYLAPALVII 300 (313)
Q Consensus 224 tllLGLQHvLaM~a~lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~~GsRLPIVqGpSFAfL~paiaIa 300 (313)
.+..|+=-+++-|++.+++-+=.+.++|++++|++..+++.++++||+|++|+++= |+|++++.| ..-+.++.+.
T Consensus 23 ~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~~-r~Pi~~awS-tPGaAll~~~ 97 (395)
T TIGR00843 23 TLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIRF-KTPVLTAWS-APGAALLVTG 97 (395)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeecC-chHHHHHHHh
Confidence 45667767777777776666666777999999999999999999999999999743 999999999 5566665443
No 10
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.53 E-value=7.5 Score=39.63 Aligned_cols=68 Identities=22% Similarity=0.214 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeecchh
Q 021398 223 PVIYYGLQHFLSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSYFGTRLPLVQGSSFV 291 (313)
Q Consensus 223 ~tllLGLQHvLaM~a~lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~~GsRLPIVqGpSFA 291 (313)
+.+..|++-+++=+++.+++-+-.+.+.|.+++|++.-+.+..+.+|+.|+.-+++ .|+|++..=|.-
T Consensus 21 ~~l~ag~va~~vG~~~s~aii~~aa~a~gas~aq~aSwl~al~l~mGv~ti~Ls~~-yR~Pv~~aWSTP 88 (402)
T COG3135 21 QTLLAGFVAVLVGYASSLAIIIQAAQAAGASPAQIASWLTALGLAMGVSTLTLSLR-YRVPVLTAWSTP 88 (402)
T ss_pred hhhhhhhHHheeccCccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhh-hccceeeeecCc
Confidence 56889999999988888777666777889999999999999999999999987764 788988665543
No 11
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=71.02 E-value=18 Score=36.81 Aligned_cols=67 Identities=24% Similarity=0.238 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeecchh
Q 021398 224 VIYYGLQHFLSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSYFGTRLPLVQGSSFV 291 (313)
Q Consensus 224 tllLGLQHvLaM~a~lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~~GsRLPIVqGpSFA 291 (313)
++.-|+=-+++-+++.+++-+=.+++.|++++|+..-+.+..+.+||.|++-++ -.|.|++..-|..
T Consensus 7 ~~~aG~va~lvg~tg~~aiv~qaa~a~g~s~~q~~SWl~al~~~~Gl~~i~lSl-~yR~Pi~~AWStP 73 (378)
T PF03594_consen 7 AVSAGFVAVLVGYTGPVAIVLQAAQAAGASPAQIASWLFALYLGMGLTSILLSL-RYRMPIVTAWSTP 73 (378)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCchhhcchH
Confidence 455566566666677666666667779999999999999999999999998876 4889997655543
No 12
>PHA03357 Alkaline exonuclease; Provisional
Probab=52.53 E-value=5.3 Score=32.46 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=30.0
Q ss_pred hhhhHHhhhCcccccccccccccCCcccccccc
Q 021398 41 ELRSWAKKTGFVSDFSGETTTDVSGKFDSAGLD 73 (313)
Q Consensus 41 ~l~swak~tgfv~~~sge~~~~~~~~~~~~~~~ 73 (313)
-..+|+||+--..+-|||+-+=+...|+.|.||
T Consensus 11 g~C~~CkR~N~LvT~sGetvaLdad~FEdF~lD 43 (81)
T PHA03357 11 GICGLCKRYNELVTCDGETLALNADCFEDFDFD 43 (81)
T ss_pred ceechhcccCeEEecCCcEEEeChhhhhccccc
Confidence 357899999999999999999999999998776
No 13
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=49.13 E-value=83 Score=29.44 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceee
Q 021398 222 VPVIYYGLQHFLSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSY----FGTRLPLVQ 286 (313)
Q Consensus 222 ~~tllLGLQHvLaM~a~lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~GsRLPIVq 286 (313)
+....+.+.-++.+.......|..+...+|++..+...+++...++..++.++... +|.|..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~ 73 (396)
T TIGR00882 5 WMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLW 73 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 33333333333333333334566667778999999998988888888888887764 777777654
No 14
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=39.71 E-value=99 Score=28.73 Aligned_cols=64 Identities=17% Similarity=0.147 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhhhhhHHH---HHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeeec
Q 021398 225 IYYGLQHFLSLAGSLIFIPL---IIVPAMGGTDKDTATVISTMLLVTGVTTTLQSY----FGTRLPLVQGS 288 (313)
Q Consensus 225 llLGLQHvLaM~a~lI~VPL---IIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~GsRLPIVqGp 288 (313)
+.+.+.+.+++++..+..|+ .+...+|++..+...+.+..++...++.++-.. +|.|..++.+.
T Consensus 18 ~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~ 88 (399)
T PRK05122 18 VSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGL 88 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHH
Confidence 44555667666665554444 455678999988888888888877777766553 67777666543
No 15
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=37.87 E-value=86 Score=31.32 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhhhhHHHHHHhcCCCC-----hHHHHHHHHHHHHHHHHHHHHHHHhCCcccee
Q 021398 227 YGLQHFLSLAGSLIFIPLIIVPAMGGT-----DKDTATVISTMLLVTGVTTTLQSYFGTRLPLV 285 (313)
Q Consensus 227 LGLQHvLaM~a~lI~VPLIIa~alGLd-----~e~ta~LISaaLfvSGIaTLLQs~~GsRLPIV 285 (313)
||++-+-+....+..+|+++.-.-+.+ .+....|+-++++.+.++|++=.+.|.|||-+
T Consensus 126 Lgv~~i~simtliaFlPiL~~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPgL 189 (315)
T PF05992_consen 126 LGVSFIRSIMTLIAFLPILWELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFVGIKLPGL 189 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHHhccCcch
Confidence 455544444444556788876543322 24556799999999999999999999999965
No 16
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=36.05 E-value=1.6e+02 Score=27.87 Aligned_cols=57 Identities=21% Similarity=0.229 Sum_probs=35.1
Q ss_pred CChhHHHHHHHHHHHHHhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHH
Q 021398 219 RGWVPVIYYGLQHFLSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQ 275 (313)
Q Consensus 219 PP~~~tllLGLQHvLaM~a~lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQ 275 (313)
+.+...++..+-..+..++.....|..+...+|+++.+...+.....++.-++.++-
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~ 311 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIA 311 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555556666678888888889998777766554444444444443
No 17
>PRK12382 putative transporter; Provisional
Probab=35.72 E-value=1.1e+02 Score=28.43 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=40.8
Q ss_pred HHHHHHhhhhhhHHH---HHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeee
Q 021398 230 QHFLSLAGSLIFIPL---IIVPAMGGTDKDTATVISTMLLVTGVTTTLQSY----FGTRLPLVQG 287 (313)
Q Consensus 230 QHvLaM~a~lI~VPL---IIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~GsRLPIVqG 287 (313)
-+++..++..+..|+ .+...+|+|..+...+++...+...++.++-.. +|.|-.++.|
T Consensus 23 ~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~ 87 (392)
T PRK12382 23 AVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQG 87 (392)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHH
Confidence 344444444444454 456788999999999999998888888777653 7887766644
No 18
>PRK09528 lacY galactoside permease; Reviewed
Probab=33.03 E-value=2.3e+02 Score=26.82 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=42.5
Q ss_pred CChhHHHHHHHHHHHHHhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceee
Q 021398 219 RGWVPVIYYGLQHFLSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSY----FGTRLPLVQ 286 (313)
Q Consensus 219 PP~~~tllLGLQHvLaM~a~lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~GsRLPIVq 286 (313)
|..+...+.-+-..++.....-..|+.+...+|+++.+...+++...++..++.++... +|.|-.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~ 81 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLW 81 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 44444333333333333222333455566678999999999988888888888877664 787766544
No 19
>PRK03893 putative sialic acid transporter; Provisional
Probab=25.97 E-value=2.7e+02 Score=26.79 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=32.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeee
Q 021398 242 IPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSY----FGTRLPLVQG 287 (313)
Q Consensus 242 VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~GsRLPIVqG 287 (313)
.|.+ ...+|+++.+...+++..++...++.++-.. +|.|.-++.+
T Consensus 43 ~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 91 (496)
T PRK03893 43 LTEV-QGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVIS 91 (496)
T ss_pred HHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 3443 3568999999999998888888888777653 7777655544
No 20
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.92 E-value=40 Score=28.32 Aligned_cols=40 Identities=23% Similarity=0.334 Sum_probs=22.4
Q ss_pred HHHhhhhhhHHHHHHhcCC--CChH-HHHHHHHHHHHHHHHHH
Q 021398 233 LSLAGSLIFIPLIIVPAMG--GTDK-DTATVISTMLLVTGVTT 272 (313)
Q Consensus 233 LaM~a~lI~VPLIIa~alG--Ld~e-~ta~LISaaLfvSGIaT 272 (313)
+..++-.+++|++++..+| ||.- .+......+|++.||+.
T Consensus 45 ~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~ 87 (100)
T TIGR02230 45 FGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVI 87 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 3445566778888888776 3321 11224444566666654
No 21
>PRK11043 putative transporter; Provisional
Probab=25.38 E-value=2.5e+02 Score=26.14 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=31.9
Q ss_pred hhhhhhHHHH--HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccce
Q 021398 236 AGSLIFIPLI--IVPAMGGTDKDTATVISTMLLVTGVTTTLQSY----FGTRLPL 284 (313)
Q Consensus 236 ~a~lI~VPLI--Ia~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~GsRLPI 284 (313)
++..+..|.+ +...+++++.+...+.+..++...+++++=.. +|.|--+
T Consensus 20 ~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~ 74 (401)
T PRK11043 20 LATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVL 74 (401)
T ss_pred HHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHH
Confidence 3444556655 56678888888888887777777777666442 5555433
No 22
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=25.21 E-value=1.9e+02 Score=30.09 Aligned_cols=73 Identities=19% Similarity=0.285 Sum_probs=53.4
Q ss_pred ccccCCCCC-hhHHHHHHHHHHHHHhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeecc
Q 021398 212 RFGLRDNRG-WVPVIYYGLQHFLSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSYFGTRLPLVQGSS 289 (313)
Q Consensus 212 ~YgVDDkPP-~~~tllLGLQHvLaM~a~lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~~GsRLPIVqGpS 289 (313)
.|+++++-. ..+-++.|+--+++|.--+++.|-|++.+- ++ ...+.-++.++++++|++-.++ +++|+-+.|.
T Consensus 9 ~F~l~~~~t~vrtEiiAGlTTFltM~YIl~VnP~IL~~ag-~~---~~av~~AT~l~a~~gs~~mgl~-An~P~alapg 82 (436)
T COG2252 9 FFKLKEHGTTVRTEVIAGLTTFLTMAYIVFVNPQILGAAG-MP---VGAVFVATCLAAAIGSIAMGLY-ANLPIALAPG 82 (436)
T ss_pred HhCccccCchHHHHHHHHHHHHHHHHHhheecHHHHHhcC-CC---chhHHHHHHHHHHHHHHHHHHH-HcCchhhcch
Confidence 466666554 455688999999999888888898887543 55 5556667778888888887766 4577776664
No 23
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=24.88 E-value=3.2e+02 Score=26.99 Aligned_cols=42 Identities=12% Similarity=-0.033 Sum_probs=28.2
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeee
Q 021398 246 IVPAMGGTDKDTATVISTMLLVTGVTTTLQSY----FGTRLPLVQG 287 (313)
Q Consensus 246 Ia~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~GsRLPIVqG 287 (313)
+...+|++..+...+.+..++...++.++-.+ +|.|..++.+
T Consensus 62 l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~ 107 (476)
T PLN00028 62 IRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFL 107 (476)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 35568999888877766666666666666543 7888665543
No 24
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=23.31 E-value=1.6e+02 Score=29.17 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=27.1
Q ss_pred HHHHHHHHhhhhhhHHHHHHhcCCCCh----HHHHHHHHHHHHHHHHHHHH
Q 021398 228 GLQHFLSLAGSLIFIPLIIVPAMGGTD----KDTATVISTMLLVTGVTTTL 274 (313)
Q Consensus 228 GLQHvLaM~a~lI~VPLIIa~alGLd~----e~ta~LISaaLfvSGIaTLL 274 (313)
.-|++|..|.+++++-+++...++... ...+.+++..|.+..+++++
T Consensus 93 ~~q~vLg~Figtfvy~l~~l~~i~~~~~~~~p~~~~~~a~~l~i~~v~~li 143 (371)
T PF10011_consen 93 VTQVVLGTFIGTFVYSLLVLIAIRSGDYGSVPRLSVFIALALAILSVVLLI 143 (371)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHHHHH
Confidence 457777777777777777766655333 23334444444444555544
No 25
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=23.02 E-value=1.5e+02 Score=26.95 Aligned_cols=62 Identities=16% Similarity=0.053 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHhCCccceeeecc
Q 021398 224 VIYYGLQHFLSLAGSLIFIPLIIVPAMGGT-DKDTATVISTMLLVTGVTTTLQSYFGTRLPLVQGSS 289 (313)
Q Consensus 224 tllLGLQHvLaM~a~lI~VPLIIa~alGLd-~e~ta~LISaaLfvSGIaTLLQs~~GsRLPIVqGpS 289 (313)
+..+.|||... .+-.|++|++-=-.+ +.-.-...-.+++++.++|++=.++-+|||-..-|-
T Consensus 65 ~~~~~l~~~t~----~~dyP~~iGGKP~~S~Pafipi~FEltVL~aa~~~~~g~l~~~~Lp~~~~p~ 127 (173)
T PF11821_consen 65 ATAFLLQWYTN----AVDYPLNIGGKPLFSWPAFIPITFELTVLFAALGTVLGMLILNGLPRLYHPL 127 (173)
T ss_pred HHHHHHHHHHH----hcccceecCCCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 34455666554 333688886531112 334445566788889999999989999999764443
No 26
>PF14246 TetR_C_7: AefR-like transcriptional repressor, C-terminal region; PDB: 3BHQ_B 3CDL_A.
Probab=22.57 E-value=2.1e+02 Score=19.84 Aligned_cols=38 Identities=16% Similarity=0.286 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHhcCCCChHHHHHHHHH
Q 021398 226 YYGLQHFLSLAGSLIFIPLIIVPAMGGTDKDTATVIST 263 (313)
Q Consensus 226 lLGLQHvLaM~a~lI~VPLIIa~alGLd~e~ta~LISa 263 (313)
-++-+|++.|+-+.+..|.+++..--.+.+++...+..
T Consensus 9 ~~AA~qf~~l~~g~~~~~~llg~~~~~s~~e~~~~v~~ 46 (55)
T PF14246_consen 9 ELAAEQFLGLLKGDLFWPALLGLAPPPSAEEIERIVES 46 (55)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHTS----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHhCCCCCcCHHHHHHHHHH
Confidence 46778999999998888988886655666776666554
No 27
>PF04955 HupE_UreJ: HupE / UreJ protein; InterPro: IPR007038 This family of proteins are hydrogenase/urease accessory proteins. They contain many conserved histidines that are likely to be involved in nickel binding.
Probab=22.41 E-value=1.1e+02 Score=27.59 Aligned_cols=30 Identities=37% Similarity=0.505 Sum_probs=19.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHhCCccce
Q 021398 251 GGTDKDTATVISTMLLVTGVTTTLQSYFGTRLPL 284 (313)
Q Consensus 251 GLd~e~ta~LISaaLfvSGIaTLLQs~~GsRLPI 284 (313)
+.+-.-....|..+++++|+.-.. +.|+|.
T Consensus 75 g~~~p~~E~~Ia~Sv~~~G~ll~~----~~r~~~ 104 (180)
T PF04955_consen 75 GVPLPGVETGIAASVLVLGLLLAF----GRRLPL 104 (180)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHh----hhccch
Confidence 345456667788888888876654 345554
No 28
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=22.37 E-value=3.8e+02 Score=24.20 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=29.4
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeeec
Q 021398 242 IPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSY----FGTRLPLVQGS 288 (313)
Q Consensus 242 VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~GsRLPIVqGp 288 (313)
.|..+...+|++..+...+.+...+...++.++=.. +|.|-.++.+.
T Consensus 24 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 74 (366)
T TIGR00886 24 AVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSL 74 (366)
T ss_pred hhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 343455667888877777777777766666666543 56665544443
No 29
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=22.22 E-value=4.2e+02 Score=24.01 Aligned_cols=42 Identities=29% Similarity=0.424 Sum_probs=31.9
Q ss_pred HhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeeec
Q 021398 247 VPAMGGTDKDTATVISTMLLVTGVTTTLQSY----FGTRLPLVQGS 288 (313)
Q Consensus 247 a~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~GsRLPIVqGp 288 (313)
...+|++..+...+.+..++...++.++-.. +|.|.+++.+.
T Consensus 39 ~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~ 84 (405)
T TIGR00891 39 AGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSI 84 (405)
T ss_pred HHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 4568899998888888888888888877664 67777666543
No 30
>TIGR00893 2A0114 d-galactonate transporter.
Probab=21.87 E-value=5e+02 Score=22.94 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=26.0
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCc
Q 021398 239 LIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSY----FGTR 281 (313)
Q Consensus 239 lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~GsR 281 (313)
....|..+...+|++..+...+.....++.-++.++-.+ +|.|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 281 (399)
T TIGR00893 235 LTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRR 281 (399)
T ss_pred HHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334677777778888777666655554444455554433 5666
No 31
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=21.81 E-value=4.2e+02 Score=24.22 Aligned_cols=59 Identities=10% Similarity=0.114 Sum_probs=39.7
Q ss_pred HHHHHhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH--------hCCccceeeecc
Q 021398 231 HFLSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSY--------FGTRLPLVQGSS 289 (313)
Q Consensus 231 HvLaM~a~lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~--------~GsRLPIVqGpS 289 (313)
-+++++-.+-.+|+.++-.-+++++++..+.-.+.+.+.+..++-.+ ||..+|.++-..
T Consensus 13 ~Lf~iinPig~ipvfl~lt~~~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaG 79 (201)
T TIGR00427 13 SLFAIINPIGNIPIFISLTEYYTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAG 79 (201)
T ss_pred HHHHHhCcchHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 34555555566788888888999998888777777777666666655 555555544333
No 32
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=21.51 E-value=2.9e+02 Score=25.71 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=27.3
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeee
Q 021398 246 IVPAMGGTDKDTATVISTMLLVTGVTTTLQSY----FGTRLPLVQG 287 (313)
Q Consensus 246 Ia~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~GsRLPIVqG 287 (313)
+...+++++.+...+.+..++...++.++-.. +|.|..++.+
T Consensus 34 i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~ 79 (394)
T PRK11652 34 MARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVG 79 (394)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHH
Confidence 45667888888877777777777666665432 5665554443
No 33
>PRK11663 regulatory protein UhpC; Provisional
Probab=21.31 E-value=3e+02 Score=26.45 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=26.6
Q ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHhC
Q 021398 241 FIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSYFG 279 (313)
Q Consensus 241 ~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~~G 279 (313)
..|..+...+|++..+...+++...++..++.++..++.
T Consensus 265 ~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~ 303 (434)
T PRK11663 265 WGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGS 303 (434)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 356666677899988777666666666667777766533
No 34
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=21.24 E-value=3.7e+02 Score=24.29 Aligned_cols=45 Identities=11% Similarity=0.081 Sum_probs=25.5
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH----HhCCccc
Q 021398 239 LIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQS----YFGTRLP 283 (313)
Q Consensus 239 lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs----~~GsRLP 283 (313)
....|..+...+|+++.+...+.....++.-+++++=. .+|.|..
T Consensus 245 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~ 293 (366)
T TIGR00886 245 SSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARK 293 (366)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchh
Confidence 34456677777888887776655554444444443322 2566533
No 35
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=20.67 E-value=4.4e+02 Score=23.31 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=24.2
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 021398 240 IFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQS 276 (313)
Q Consensus 240 I~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs 276 (313)
...|..+...++++..+...+.....++.-+++++-.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLG 268 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668877777888887777666555555555555544
No 36
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=20.46 E-value=2.9e+02 Score=26.62 Aligned_cols=85 Identities=13% Similarity=0.151 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHh----hhhhhHHHH--HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeeecc
Q 021398 220 GWVPVIYYGLQHFLSLA----GSLIFIPLI--IVPAMGGTDKDTATVISTMLLVTGVTTTLQSY----FGTRLPLVQGSS 289 (313)
Q Consensus 220 P~~~tllLGLQHvLaM~----a~lI~VPLI--Ia~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~GsRLPIVqGpS 289 (313)
++..++.+...-.+..+ +..+..|.+ ++..++.+..+....++.-++..+++.++-.. +|.|-.++.+ .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~-~ 88 (413)
T PRK15403 10 RHAATLFFPMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITG-A 88 (413)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHH-H
Q ss_pred hhhHHHHHHHHhhccC
Q 021398 290 FVYLAPALVIINAREY 305 (313)
Q Consensus 290 FAfL~paiaIa~~~g~ 305 (313)
+.+....+.......+
T Consensus 89 ~~~~~~~~~~~~a~~~ 104 (413)
T PRK15403 89 LIFTLACAATLFTTSM 104 (413)
T ss_pred HHHHHHHHHHHHcCCH
No 37
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=20.05 E-value=2e+02 Score=28.27 Aligned_cols=22 Identities=14% Similarity=0.394 Sum_probs=13.1
Q ss_pred HHHHhhhhhhHHHHHHhcCCCC
Q 021398 232 FLSLAGSLIFIPLIIVPAMGGT 253 (313)
Q Consensus 232 vLaM~a~lI~VPLIIa~alGLd 253 (313)
+|+.++.++++|-+|++..|++
T Consensus 258 ~lTv~s~if~pptliagiyGMN 279 (316)
T PRK11085 258 IFSVVSVVFLPPTLVASSYGMN 279 (316)
T ss_pred HHHHHHHHHHHHHHHHhhcccc
Confidence 4555555666666666666544
Done!