Query 021398
Match_columns 313
No_of_seqs 149 out of 1130
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 03:34:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 99.7 5.4E-17 1.9E-21 157.5 8.5 85 210-306 3-88 (429)
2 1pw4_A Glycerol-3-phosphate tr 31.5 70 0.0024 28.0 5.5 55 233-287 266-326 (451)
3 3o7q_A L-fucose-proton symport 28.4 1.1E+02 0.0039 26.6 6.3 47 239-285 278-329 (438)
4 2cfq_A Lactose permease; trans 24.6 95 0.0032 27.8 5.2 48 240-287 28-79 (417)
5 2gfp_A EMRD, multidrug resista 24.2 2.5E+02 0.0085 24.0 7.6 45 246-290 26-74 (375)
6 4aps_A DI-OR tripeptide H+ sym 22.0 1.8E+02 0.0061 26.1 6.4 49 240-288 34-92 (491)
7 2kng_A Protein LSR2; DNA-bindi 19.0 35 0.0012 25.1 0.9 32 38-69 14-45 (55)
8 2xut_A Proton/peptide symporte 18.1 2.4E+02 0.0082 25.5 6.5 48 240-287 33-91 (524)
9 3o7q_A L-fucose-proton symport 17.2 2.1E+02 0.0073 24.9 5.7 49 246-294 52-104 (438)
10 1eci_B Ectatomin; pore-forming 17.0 36 0.0012 22.7 0.5 9 41-49 12-20 (34)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=99.67 E-value=5.4e-17 Score=157.53 Aligned_cols=85 Identities=25% Similarity=0.537 Sum_probs=77.5
Q ss_pred ccccccCCCCChhHHHHHHHHHHHHHhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHh-CCccceeeec
Q 021398 210 ELRFGLRDNRGWVPVIYYGLQHFLSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSYF-GTRLPLVQGS 288 (313)
Q Consensus 210 ~l~YgVDDkPP~~~tllLGLQHvLaM~a~lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~~-GsRLPIVqGp 288 (313)
+..|++||+||+.+.+++||||+++|+++++++|+++ |+|+ +++||+|||+|++|+++ |+|+|++||+
T Consensus 3 ~~~~~~~~~~~~~~~i~~GlQh~lam~~~~v~~Plil----Gl~~-------~~~l~~agi~Tllq~~~~~~~lP~~~G~ 71 (429)
T 3qe7_A 3 RRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLF----HINP-------ATVLLFNGIGTLLYLFICKGKIPAYLGS 71 (429)
T ss_dssp -CCBCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTT----TSCH-------HHHHHHHHHHHHHHHHHTTTCCCCCEEE
T ss_pred CcccCcccCCCHHHHHHHHHHHHHHHHHHHHHhHHHh----CCCH-------HHHHHHHHHHHHHHHHHcCCCCCeEecC
Confidence 5679999999999999999999999999999999998 7886 48999999999999985 8999999999
Q ss_pred chhhHHHHHHHHhhccCC
Q 021398 289 SFVYLAPALVIINAREYR 306 (313)
Q Consensus 289 SFAfL~paiaIa~~~g~~ 306 (313)
||+|++|++++.. .+|+
T Consensus 72 sfafi~~~~~i~~-~g~~ 88 (429)
T 3qe7_A 72 SFAFISPVLLLLP-LGYE 88 (429)
T ss_dssp CGGGHHHHHHHGG-GCHH
T ss_pred hHHHHHHHHHHHh-cCHH
Confidence 9999999999886 5543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=31.53 E-value=70 Score=28.01 Aligned_cols=55 Identities=15% Similarity=-0.076 Sum_probs=34.4
Q ss_pred HHHhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----h--CCccceeee
Q 021398 233 LSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSY----F--GTRLPLVQG 287 (313)
Q Consensus 233 LaM~a~lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~--GsRLPIVqG 287 (313)
+...+.....|..+...+|+++.+...+.....++.-++.++-.+ + |.|..++.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~ 326 (451)
T 1pw4_A 266 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVF 326 (451)
T ss_dssp HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 333344456777777778999888777766666666666665443 5 665554433
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=28.45 E-value=1.1e+02 Score=26.63 Aligned_cols=47 Identities=11% Similarity=0.077 Sum_probs=30.2
Q ss_pred hhhHHHH-HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCcccee
Q 021398 239 LIFIPLI-IVPAMGGTDKDTATVISTMLLVTGVTTTLQSY----FGTRLPLV 285 (313)
Q Consensus 239 lI~VPLI-Ia~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~GsRLPIV 285 (313)
....|.. +...+|++..+...+.....++..++.++-.+ +|.|..++
T Consensus 278 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~ 329 (438)
T 3o7q_A 278 WSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLA 329 (438)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 3445666 77778999888887777666666666665443 55554433
No 4
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=24.62 E-value=95 Score=27.82 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=35.5
Q ss_pred hhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeee
Q 021398 240 IFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSY----FGTRLPLVQG 287 (313)
Q Consensus 240 I~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~GsRLPIVqG 287 (313)
...|+.+...+|+++.+...+++...++..++.++=.. +|.|-.++.+
T Consensus 28 ~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~ 79 (417)
T 2cfq_A 28 PFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWI 79 (417)
T ss_dssp TTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 34566667778999999888888888888887777553 7777666544
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=24.24 E-value=2.5e+02 Score=24.04 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=32.1
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeeecch
Q 021398 246 IVPAMGGTDKDTATVISTMLLVTGVTTTLQSY----FGTRLPLVQGSSF 290 (313)
Q Consensus 246 Ia~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~GsRLPIVqGpSF 290 (313)
+...+|++..+...+.+...+...++.++-.. +|.|-.++.+...
T Consensus 26 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 74 (375)
T 2gfp_A 26 MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSI 74 (375)
T ss_dssp HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 35668999988888888888877777776554 6777666644433
No 6
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=22.01 E-value=1.8e+02 Score=26.06 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=35.0
Q ss_pred hhHHHHHHhc-----CCCChHHHHHHHHHHHHHHHHHHHHHHH-----hCCccceeeec
Q 021398 240 IFIPLIIVPA-----MGGTDKDTATVISTMLLVTGVTTTLQSY-----FGTRLPLVQGS 288 (313)
Q Consensus 240 I~VPLIIa~a-----lGLd~e~ta~LISaaLfvSGIaTLLQs~-----~GsRLPIVqGp 288 (313)
...|..+... +|++..+...+.+...++..++.++-.. +|.|..++.|.
T Consensus 34 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~ 92 (491)
T 4aps_A 34 AILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGG 92 (491)
T ss_dssp HHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 3445555555 8999999999998888888888887663 46665555443
No 7
>2kng_A Protein LSR2; DNA-binding domain, immune response, DNA binding protein; NMR {Mycobacterium tuberculosis}
Probab=19.00 E-value=35 Score=25.10 Aligned_cols=32 Identities=22% Similarity=0.540 Sum_probs=22.4
Q ss_pred CchhhhhHHhhhCcccccccccccccCCcccc
Q 021398 38 NPRELRSWAKKTGFVSDFSGETTTDVSGKFDS 69 (313)
Q Consensus 38 ~p~~l~swak~tgfv~~~sge~~~~~~~~~~~ 69 (313)
++++.|.||+..||--.--|-..+..-+.|+.
T Consensus 14 ~~~aIR~WAr~nG~~VsdRGRIp~~V~eAY~a 45 (55)
T 2kng_A 14 QSAAIREWARRNGHNVSTRGRIPADVIDAYHA 45 (55)
T ss_dssp HHHHHHHHHHHTTCCCCSSSCCCHHHHHHHHH
T ss_pred ChHHHHHHHHHcCCcCCCCCCCCHHHHHHHHH
Confidence 68899999999999665555555444444444
No 8
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=18.07 E-value=2.4e+02 Score=25.53 Aligned_cols=48 Identities=10% Similarity=0.091 Sum_probs=32.6
Q ss_pred hhHHHHHHhcCC------CChHHHHHHHHHHHHHHHHHHHHHHH----h-CCccceeee
Q 021398 240 IFIPLIIVPAMG------GTDKDTATVISTMLLVTGVTTTLQSY----F-GTRLPLVQG 287 (313)
Q Consensus 240 I~VPLIIa~alG------Ld~e~ta~LISaaLfvSGIaTLLQs~----~-GsRLPIVqG 287 (313)
...|..+...+| ++..+...+.+...+...++.++-.+ + |.|..++.+
T Consensus 33 ~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~ 91 (524)
T 2xut_A 33 NILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWL 91 (524)
T ss_dssp HHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHH
T ss_pred HHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 345555667788 89888888888877777777776554 5 666554433
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=17.20 E-value=2.1e+02 Score=24.87 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=34.4
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeeecchhhHH
Q 021398 246 IVPAMGGTDKDTATVISTMLLVTGVTTTLQSY----FGTRLPLVQGSSFVYLA 294 (313)
Q Consensus 246 Ia~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~GsRLPIVqGpSFAfL~ 294 (313)
+...+|++..+...+.+...+...++.++-.. +|.|..++.+.....+.
T Consensus 52 ~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 104 (438)
T 3o7q_A 52 FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALG 104 (438)
T ss_dssp HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHH
Confidence 45668999999888888888887777777553 67776665554444333
No 10
>1eci_B Ectatomin; pore-forming toxins, ANT venoms; NMR {Ectatomma tuberculatum} SCOP: a.33.1.1
Probab=16.97 E-value=36 Score=22.72 Aligned_cols=9 Identities=56% Similarity=0.597 Sum_probs=7.0
Q ss_pred hhhhHHhhh
Q 021398 41 ELRSWAKKT 49 (313)
Q Consensus 41 ~l~swak~t 49 (313)
-++|||||-
T Consensus 12 t~~~~akkc 20 (34)
T 1eci_B 12 TLKSMAKKC 20 (34)
T ss_dssp HHHHHHTTB
T ss_pred cchHHHHhc
Confidence 478999984
Done!