Query 021398
Match_columns 313
No_of_seqs 149 out of 1130
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 03:34:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021398.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021398hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 48.4 16 0.0011 28.5 5.8 47 243-289 31-81 (417)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 18.3 1.7E+02 0.012 23.1 7.3 39 239-277 269-307 (447)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 10.9 2.6E+02 0.019 21.9 6.4 7 253-259 373-379 (447)
4 d1y8ca_ c.66.1.43 (A:) Putativ 10.8 54 0.0039 25.5 2.0 16 37-52 203-218 (246)
5 d2cwqa1 a.152.1.4 (A:1-117) Hy 10.8 1.9E+02 0.014 20.9 5.2 54 222-276 57-110 (117)
6 d1dcja_ d.68.3.3 (A:) SirA {Es 10.3 39 0.0028 23.2 0.8 16 38-53 48-63 (81)
7 d1pava_ d.68.3.3 (A:) Hypothet 9.8 41 0.003 22.9 0.8 15 38-52 45-59 (78)
8 d2iuba2 f.17.3.1 (A:286-349) M 9.0 1.7E+02 0.013 18.9 3.9 23 232-254 8-30 (64)
9 d1je3a_ d.68.3.3 (A:) hypothet 7.7 61 0.0044 23.3 1.0 16 38-53 66-81 (97)
10 d1jdqa_ d.68.3.3 (A:) Hypothet 7.7 59 0.0043 23.4 1.0 13 40-52 67-79 (98)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=48.40 E-value=16 Score=28.46 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=35.7
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH----hCCccceeeecc
Q 021398 243 PLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSY----FGTRLPLVQGSS 289 (313)
Q Consensus 243 PLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~----~GsRLPIVqGpS 289 (313)
|+.+...+|++..+...+.+...+...++.++-.. +|.|-.++.+..
T Consensus 31 ~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~ 81 (417)
T d1pv7a_ 31 PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT 81 (417)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 44456778999999999988888888888777654 788877665443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=18.32 E-value=1.7e+02 Score=23.09 Aligned_cols=39 Identities=10% Similarity=-0.098 Sum_probs=29.0
Q ss_pred hhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 021398 239 LIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQSY 277 (313)
Q Consensus 239 lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs~ 277 (313)
....|..+....+++..+...+.....++..+++++..+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 307 (447)
T d1pw4a_ 269 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 307 (447)
T ss_dssp HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhh
Confidence 344577777788999988888887777777777777654
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=10.91 E-value=2.6e+02 Score=21.94 Aligned_cols=7 Identities=29% Similarity=0.340 Sum_probs=2.8
Q ss_pred ChHHHHH
Q 021398 253 TDKDTAT 259 (313)
Q Consensus 253 d~e~ta~ 259 (313)
+.+.+..
T Consensus 373 p~~~~g~ 379 (447)
T d1pw4a_ 373 PKKAAGT 379 (447)
T ss_dssp CTTHHHH
T ss_pred CHHHHHH
Confidence 3344433
No 4
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}
Probab=10.81 E-value=54 Score=25.53 Aligned_cols=16 Identities=6% Similarity=0.187 Sum_probs=14.3
Q ss_pred CCchhhhhHHhhhCcc
Q 021398 37 HNPRELRSWAKKTGFV 52 (313)
Q Consensus 37 ~~p~~l~swak~tgfv 52 (313)
+.+.++++|.++.||.
T Consensus 203 ~~~~~l~~~l~~~Gf~ 218 (246)
T d1y8ca_ 203 YKEEDIEKYLKHGQLN 218 (246)
T ss_dssp CCHHHHHHHHHHTTEE
T ss_pred CCHHHHHHHHHHCCCE
Confidence 5778999999999996
No 5
>d2cwqa1 a.152.1.4 (A:1-117) Hypothetical protein TTHA0727 {Thermus thermophilus [TaxId: 274]}
Probab=10.80 E-value=1.9e+02 Score=20.87 Aligned_cols=54 Identities=6% Similarity=-0.040 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 021398 222 VPVIYYGLQHFLSLAGSLIFIPLIIVPAMGGTDKDTATVISTMLLVTGVTTTLQS 276 (313)
Q Consensus 222 ~~tllLGLQHvLaM~a~lI~VPLIIa~alGLd~e~ta~LISaaLfvSGIaTLLQs 276 (313)
..++.++..+..-+ ..++...+-.+..+|++++++.-.+..+.++.|..++.++
T Consensus 57 reLI~la~s~a~gc-~~c~~~h~~~A~~~G~t~eEI~Eal~ia~~~~g~~~~~~a 110 (117)
T d2cwqa1 57 RTLILLGIALATGS-EACVKAMAHRAKRLGLSKEALLETLKIARQAQANAVLGHA 110 (117)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccchHHHHH
Confidence 34566666665543 3355566666777899999999999999999998888764
No 6
>d1dcja_ d.68.3.3 (A:) SirA {Escherichia coli [TaxId: 562]}
Probab=10.28 E-value=39 Score=23.21 Aligned_cols=16 Identities=6% Similarity=0.121 Sum_probs=13.1
Q ss_pred CchhhhhHHhhhCccc
Q 021398 38 NPRELRSWAKKTGFVS 53 (313)
Q Consensus 38 ~p~~l~swak~tgfv~ 53 (313)
-.++++.||+++|+.-
T Consensus 48 a~~di~~~~~~~g~~~ 63 (81)
T d1dcja_ 48 TTRDIPGFCTFMEHEL 63 (81)
T ss_dssp HHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHcCCEE
Confidence 3569999999999853
No 7
>d1pava_ d.68.3.3 (A:) Hypothetical protein Ta1170/Ta1414 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=9.80 E-value=41 Score=22.89 Aligned_cols=15 Identities=20% Similarity=0.578 Sum_probs=12.7
Q ss_pred CchhhhhHHhhhCcc
Q 021398 38 NPRELRSWAKKTGFV 52 (313)
Q Consensus 38 ~p~~l~swak~tgfv 52 (313)
-.++++.||+++|+-
T Consensus 45 a~~di~~~~~~~g~~ 59 (78)
T d1pava_ 45 TKKDAPAWIQKSGQE 59 (78)
T ss_dssp HHHHHHHHHHHHTEE
T ss_pred HHHHHHHHHHHcCCE
Confidence 346999999999984
No 8
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=9.03 E-value=1.7e+02 Score=18.93 Aligned_cols=23 Identities=13% Similarity=0.153 Sum_probs=15.3
Q ss_pred HHHHhhhhhhHHHHHHhcCCCCh
Q 021398 232 FLSLAGSLIFIPLIIVPAMGGTD 254 (313)
Q Consensus 232 vLaM~a~lI~VPLIIa~alGLd~ 254 (313)
.|+.++.+.++|-++++.+|++-
T Consensus 8 ~lT~it~iflP~t~i~gifGMN~ 30 (64)
T d2iuba2 8 VLTIIATIFMPLTFIAGIYGMNF 30 (64)
T ss_dssp HHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHhhhccCC
Confidence 46667777777788899888653
No 9
>d1je3a_ d.68.3.3 (A:) hypothetical protein YedF (EC005) {Escherichia coli [TaxId: 562]}
Probab=7.75 E-value=61 Score=23.28 Aligned_cols=16 Identities=13% Similarity=0.219 Sum_probs=13.3
Q ss_pred CchhhhhHHhhhCccc
Q 021398 38 NPRELRSWAKKTGFVS 53 (313)
Q Consensus 38 ~p~~l~swak~tgfv~ 53 (313)
-.++++.||+++||--
T Consensus 66 a~~di~~~~~~~g~~v 81 (97)
T d1je3a_ 66 SINNIPLDARNHGYTV 81 (97)
T ss_dssp SSCHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHcCCEE
Confidence 4569999999999954
No 10
>d1jdqa_ d.68.3.3 (A:) Hypothetical protein TM0983 {Thermotoga maritima [TaxId: 2336]}
Probab=7.67 E-value=59 Score=23.37 Aligned_cols=13 Identities=23% Similarity=0.238 Sum_probs=11.5
Q ss_pred hhhhhHHhhhCcc
Q 021398 40 RELRSWAKKTGFV 52 (313)
Q Consensus 40 ~~l~swak~tgfv 52 (313)
++++.|||++|+.
T Consensus 67 ~dI~~~~~~~g~~ 79 (98)
T d1jdqa_ 67 ERIPETVKKLGHE 79 (98)
T ss_dssp HHHHHHHHHSSCC
T ss_pred HHHHHHHHHcCCE
Confidence 4899999999984
Done!