BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021399
(313 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 226 bits (577), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 185/324 (57%), Gaps = 19/324 (5%)
Query: 1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
M+ I + GHERPLT +KYNK+GDLLFSC+KD + +VW++ NGERLGT GH G +W DV
Sbjct: 23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDV 82
Query: 61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
+ +TGSAD + KLW+V G + T+ P + V+F+ + D M+
Sbjct: 83 DCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPG 142
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRI---------NRAVWGPLNRTIISAGEDAIVR 171
+I++ I RD A E + + P +I A W + II+ +D +
Sbjct: 143 SINIYEIERDSATH--ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKIS 200
Query: 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231
+D + D H+K+I+ + + D ++F+T S D ++ L D TL+++K Y T
Sbjct: 201 KYDVSNN--YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYET 258
Query: 232 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI 291
+ P+N ++PL + ++LGGGQ+A VTTT GKFEA+F+ KI +EEIG V+GHFGP+
Sbjct: 259 DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPL 318
Query: 292 NALAFNPDGKRY------GFLLLQ 309
N +A +P G Y GF+ L
Sbjct: 319 NTVAISPQGTSYASGGEDGFIRLH 342
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 133/299 (44%), Gaps = 38/299 (12%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
++ H + + ++ DG + S + D T +W NG+ L T GH+ +VW S D
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQ 70
Query: 66 TLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIH 123
T+ + S D+T KLWN G L T S R V F+ G +A + D ++L
Sbjct: 71 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL----- 124
Query: 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183
++ G+ + L G + + P +TI SA +D V++W+ G+LL+
Sbjct: 125 --------WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT 175
Query: 184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP 242
TGH ++ +A + DG + S DK+ KLW+ R +L++T V V SP
Sbjct: 176 ---LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 231
Query: 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 301
D + D V + ++LQ + GH +N +AF PDG+
Sbjct: 232 --DGQTIASASDDKTVKLWNRNG---------QLLQT----LTGHSSSVNGVAFRPDGQ 275
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/299 (27%), Positives = 134/299 (44%), Gaps = 38/299 (12%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + + ++ DG + S + D T +W NG+ L T GH+ +VW S D
Sbjct: 299 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-NRNGQHLQTLTGHSSSVWGVAFSPDGQ 357
Query: 66 TLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIH 123
T+ + S D+T KLWN G L T S R V F+ G +A + D ++L
Sbjct: 358 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL----- 411
Query: 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183
++ G+ + L G + + P ++TI SA +D V++W+ G+LL+
Sbjct: 412 --------WNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQT 462
Query: 184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP 242
TGH ++ +A + DG + S DK+ KLW+ R +L++T V V SP
Sbjct: 463 ---LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 518
Query: 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 301
D + D V + ++LQ + GH + +AF+PDG+
Sbjct: 519 --DGQTIASASDDKTVKLWNRNG---------QLLQT----LTGHSSSVWGVAFSPDGQ 562
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 130/299 (43%), Gaps = 38/299 (12%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + + + DG + S + D T +W NG+ L T GH+ +VW S D
Sbjct: 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDGQ 316
Query: 66 TLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIH 123
T+ + S D+T KLWN G L T S V F+ G +A + D ++L
Sbjct: 317 TIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL----- 370
Query: 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183
++ G+ + L G + + P +TI SA +D V++W+ G+LL+
Sbjct: 371 --------WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT 421
Query: 184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP 242
TGH ++ +A + D + S DK+ KLW+ R +L++T V V SP
Sbjct: 422 ---LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 477
Query: 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 301
D + D V + ++LQ + GH + +AF+PDG+
Sbjct: 478 --DGQTIASASDDKTVKLWNRNG---------QLLQT----LTGHSSSVRGVAFSPDGQ 521
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 21/216 (9%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + + ++ DG + S + D T +W NG+ L T GH+ +VW S D
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVWGVAFSPDDQ 439
Query: 66 TLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIH 123
T+ + S D+T KLWN G L T S R V F+ G +A + D ++L
Sbjct: 440 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKL----- 493
Query: 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183
++ G+ + L G + + P +TI SA +D V++W+ G+LL+
Sbjct: 494 --------WNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT 544
Query: 184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
TGH ++ +A + DG + S DK+ KLW+
Sbjct: 545 ---LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 133/299 (44%), Gaps = 38/299 (12%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + + ++ DG + S + D T +W NG+ L T GH+ +V D
Sbjct: 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLTGHSSSVNGVAFRPDGQ 275
Query: 66 TLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIH 123
T+ + S D+T KLWN G L T S V F+ G +A + D ++L
Sbjct: 276 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL----- 329
Query: 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183
++ G+ + L G + + P +TI SA +D V++W+ G+LL+
Sbjct: 330 --------WNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQT 380
Query: 184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP 242
TGH ++ +A + DG + S DK+ KLW+ R +L++T V V SP
Sbjct: 381 ---LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 436
Query: 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 301
D + + +D + K + ++LQ + GH + +AF+PDG+
Sbjct: 437 ----------DDQTIASASDDKTVKLWNR-NGQLLQT----LTGHSSSVRGVAFSPDGQ 480
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 17/122 (13%)
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVT 239
+KE ++ H ++ +A + DG + S DK+ KLW+ R +L++T V V
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 64
Query: 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
SP D + D V + ++LQ + GH + +AF+PD
Sbjct: 65 FSP--DGQTIASASDDKTVKLWNRNG---------QLLQT----LTGHSSSVRGVAFSPD 109
Query: 300 GK 301
G+
Sbjct: 110 GQ 111
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/307 (27%), Positives = 135/307 (43%), Gaps = 54/307 (17%)
Query: 3 PILMKGHE-RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS 61
P ++KGH+ +T L++ G+ + S + D+T VW A G+ L T GH G VW +
Sbjct: 111 PKVLKGHDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM- 167
Query: 62 RDSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
RD++ +I+GS D+T K+WN ETG + T + S R +
Sbjct: 168 RDNI-IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMH-------------------- 206
Query: 121 AIHVKRIARDPAD--------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI 172
+H KR+ D + G+ + +L G + + R ++S D +V++
Sbjct: 207 -LHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD--GRRVVSGAYDFMVKV 263
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
WD ET L GH + SL DG H ++GSLD S ++WD T I T
Sbjct: 264 WDPETETCLHTLQ---GHTNRVYSL--QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 292
+ + + L D++++ G D S V D + G+ + + G H +
Sbjct: 319 QSLTS--GMELKDNILVSGNAD-STVKIWDIKTGQ---------CLQTLQGPNKHQSAVT 366
Query: 293 ALAFNPD 299
L FN +
Sbjct: 367 CLQFNKN 373
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 25/183 (13%)
Query: 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
++ GH + ++Y DG + S A D VW + L T +GH V+ + D
Sbjct: 234 VLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY--SLQFDG 289
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+ +++GS D + ++W+VETG + T S MEL I V
Sbjct: 290 IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS----------------GMELKDNILV 333
Query: 125 KRIARDPAD----QGGESVLILKGPQGRINRAVWGPLNRT-IISAGEDAIVRIWDTETGK 179
A + G+ + L+GP + N+ +I++ +D V++WD +TG+
Sbjct: 334 SGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGE 393
Query: 180 LLK 182
++
Sbjct: 394 FIR 396
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 82 LLVSASDDKTLKIWDVSS------------------------------------------ 99
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 100 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 147
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 148 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
L G ++ + P + S+ D +++IW GK K +GHK I+ +A
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 76
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
++D + ++ S DK+ K+WD + + +KT V +P + +V G + +V
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 134
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
D + GK + + H P++A+ FN DG
Sbjct: 135 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 164
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 82 LLVSASDDKTLKIWDVSS------------------------------------------ 99
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 100 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 147
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 148 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
L G ++ + P + S+ D +++IW GK K +GHK I+ +A
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 76
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
++D + ++ S DK+ K+WD + + +KT V +P + +V G + +V
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 134
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
D + GK + + H P++A+ FN DG
Sbjct: 135 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 164
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 96/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 82 LLVSASDDKTLKIWDVSS------------------------------------------ 99
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TG LK
Sbjct: 100 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKT-- 147
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 148 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 70/163 (42%), Gaps = 18/163 (11%)
Query: 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
+ L G ++ + P + S+ D +++IW GK K +GHK I+ +A
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVA 75
Query: 199 KAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASA 257
++D + ++ S DK+ K+WD + + +KT V +P + +V G ++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 133
Query: 258 VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
+ +D + + H P++A+ FN DG
Sbjct: 134 ------------VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDG 164
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 178
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 179 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 236
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 237 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 279
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 85 LLVSASDDKTLKIWDVSS------------------------------------------ 102
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 103 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 150
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 151 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
L G ++ + P + S+ D +++IW GK K +GHK I+ +A
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 79
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
++D + ++ S DK+ K+WD + + +KT V +P + +V G + +V
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 137
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
D + GK + + H P++A+ FN DG
Sbjct: 138 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 167
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 60 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 119
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 171
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 172 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 229
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 230 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 272
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 77
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 78 LLVSASDDKTLKIWDVSS------------------------------------------ 95
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 96 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 143
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 144 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 201
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 18/160 (11%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201
L G ++ + P + S+ D +++IW GK K +GHK I+ +A ++
Sbjct: 18 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 74
Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
D + ++ S DK+ K+WD + + +KT V +P + +V G + +V
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SVRI 132
Query: 261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
D + GK + + H P++A+ FN DG
Sbjct: 133 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 160
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 276
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L + + D +W A +G+ T GH + S DS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 82 LLVSASDDKTLKIWDVSS------------------------------------------ 99
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 100 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 147
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 148 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
L G ++ + P + ++ D +++IW GK K +GHK I+ +A
Sbjct: 20 FTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 76
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
++D + ++ S DK+ K+WD + + +KT V +P + +V G + +V
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 134
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
D + GK + + H P++A+ FN DG
Sbjct: 135 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 164
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 54/228 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
+++GS D++ ++W+V+TG L T PA S DP SA+H
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV----SAVHFN 164
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
R G + I+S+ D + RIWDT +G+ LK
Sbjct: 165 R-------------------DGSL-----------IVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233
+ ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 195 DD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 85 LLVSASDDKTLKIWDVSS------------------------------------------ 102
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 103 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 150
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 151 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
L G ++ + P + S+ D +++IW GK K +GHK I+ +A
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 79
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
++D + ++ S DK+ K+WD + + +KT V +P + +V G + +V
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 137
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
D + GK + + H P++A+ FN DG
Sbjct: 138 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 167
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 78 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 137
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 189
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 190 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 247
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 248 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 290
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 36 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 95
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 96 LLVSASDDKTLKIWDVSS------------------------------------------ 113
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 114 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 161
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 162 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 219
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
L G ++ + P + S+ D +++IW GK K +GHK I+ +A
Sbjct: 34 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 90
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
++D + ++ S DK+ K+WD + + +KT V +P + +V G + +V
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 148
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
D + GK + + H P++A+ FN DG
Sbjct: 149 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 178
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 57 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 116
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 168
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 169 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 226
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 227 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 269
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 74
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 75 LLVSASDDKTLKIWDVSS------------------------------------------ 92
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 93 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 140
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 141 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 198
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 18/160 (11%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201
L G ++ + P + S+ D +++IW GK K +GHK I+ +A ++
Sbjct: 15 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAWSS 71
Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
D + ++ S DK+ K+WD + + +KT V +P + +V G + +V
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SVRI 129
Query: 261 TDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
D + GK + + H P++A+ FN DG
Sbjct: 130 WDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 157
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 172
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 79 LLVSASDDKTLKIWDVSS------------------------------------------ 96
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 97 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 144
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 145 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
L G ++ + P + S+ D +++IW GK K +GHK I+ +A
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 73
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
++D + ++ S DK+ K+WD + + +KT V +P + +V G + +V
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 131
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
D + GK + + H P++A+ FN DG
Sbjct: 132 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 161
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 54/228 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 67 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 126
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
+++GS D++ ++W+V+TG L T PA S DP SA+H
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV----SAVHFN 164
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
R G + I+S+ D + RIWDT +G+ LK
Sbjct: 165 R-------------------DGSL-----------IVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233
+ ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 195 DD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 25 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 84
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 85 LLVSASDDKTLKIWDVSS------------------------------------------ 102
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 103 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 150
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 151 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 208
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
L G ++ + P + S+ D +++IW GK K +GHK I+ +A
Sbjct: 23 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 79
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
++D + ++ S DK+ K+WD + + +KT V +P + +V G + +V
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 137
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
D + GK + + H P++A+ FN DG
Sbjct: 138 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 167
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 66 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 125
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 177
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 178 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 235
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 236 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 278
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 24 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 83
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 84 LLVSASDDKTLKIWDVSS------------------------------------------ 101
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 102 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 149
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 150 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 207
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
L G ++ + P + S+ D +++IW GK K +GHK I+ +A
Sbjct: 22 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 78
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
++D + ++ S DK+ K+WD + + +KT V +P + +V G + +V
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 136
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
D + GK + + H P++A+ FN DG
Sbjct: 137 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 166
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 62 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 121
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 173
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 174 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 231
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 232 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 274
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 20 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 79
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 80 LLVSASDDKTLKIWDVSS------------------------------------------ 97
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 98 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 145
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 146 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 203
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
L G ++ + P + S+ D +++IW GK K +GHK I+ +A
Sbjct: 18 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 74
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
++D + ++ S DK+ K+WD + + +KT V +P + +V G + +V
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 132
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
D + GK + + H P++A+ FN DG
Sbjct: 133 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 162
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 61 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 120
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 172
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 173 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 230
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ 273
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 78
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 79 LLVSASDDKTLKIWDVSS------------------------------------------ 96
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 97 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 144
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 145 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 202
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
L G ++ + P + S+ D +++IW GK K +GHK I+ +A
Sbjct: 17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 73
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
++D + ++ S DK+ K+WD + + +KT V +P + +V G + +V
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 131
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
D + GK + + H P++A+ FN DG
Sbjct: 132 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 161
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 54/228 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 85 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 144
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
+++GS D++ ++W+V+TG L T PA S DP SA+H
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV----SAVHFN 182
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
R G + I+S+ D + RIWDT +G+ LK
Sbjct: 183 R-------------------DGSL-----------IVSSSYDGLCRIWDTASGQCLKTLI 212
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233
+ ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 213 DD--DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 258
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 103 LLVSASDDKTLKIWDVSS------------------------------------------ 120
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 121 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 168
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 169 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 226
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
L G ++ + P + S+ D +++IW GK K +GHK I+ +A
Sbjct: 41 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 97
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
++D + ++ S DK+ K+WD + + +KT V +P + +V G + +V
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 155
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
D + GK + + H P++A+ FN DG
Sbjct: 156 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 185
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 104/228 (45%), Gaps = 54/228 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 83 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 142
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
+++GS D++ ++W+V+TG L T PA S DP SA+H
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTL----PAHS--------------DPV----SAVHFN 180
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
R G + I+S+ D + RIWDT +G+ LK
Sbjct: 181 R-------------------DGSL-----------IVSSSYDGLCRIWDTASGQCLKTLI 210
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233
+ ++ + + +G + L +LD + KLWD + +KTY +
Sbjct: 211 DDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 256
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 41 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 101 LLVSASDDKTLKIWDVSS------------------------------------------ 118
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TGK LK
Sbjct: 119 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-- 166
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 167 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 224
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 18/162 (11%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
L G ++ + P + S+ D +++IW GK K +GHK I+ +A
Sbjct: 39 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVAW 95
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258
++D + ++ S DK+ K+WD + + +KT V +P + +V G + +V
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE--SV 153
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
D + GK + + H P++A+ FN DG
Sbjct: 154 RIWDVKTGKC------------LKTLPAHSDPVSAVHFNRDG 183
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 109/223 (48%), Gaps = 11/223 (4%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH+ ++ + ++ D +LL S + D T +W +G+ L T +GH+ V+CC+ + S
Sbjct: 64 ISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSN 123
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+++GS D++ ++W+V+TG L T S P +V F L V + S +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSS--------SYDGL 175
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI + Q ++++ P ++ + P + I++A D +++WD GK LK
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPP--VSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTY 233
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
K I + G ++GS D +W+ +T E+++
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 96/239 (40%), Gaps = 57/239 (23%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + ++ +K++ +G+ L S + D +W A +G+ T GH + S DS
Sbjct: 22 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 81
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L++ S D+T K+W+V +
Sbjct: 82 LLVSASDDKTLKIWDVSS------------------------------------------ 99
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
G+ + LKG + + P + I+S D VRIWD +TG LK
Sbjct: 100 ----------GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKT-- 147
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242
H ++++ DGS ++ S D ++WD + + +KT + + PV+ V SP
Sbjct: 148 -LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP 205
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 70/163 (42%), Gaps = 18/163 (11%)
Query: 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
+ L G ++ + P + S+ D +++IW GK K +GHK I+ +A
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTI---SGHKLGISDVA 75
Query: 199 KAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASA 257
++D + ++ S DK+ K+WD + + +KT V +P + +V G ++
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-- 133
Query: 258 VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
+ +D + + H P++A+ FN DG
Sbjct: 134 ------------VRIWDVKTGMCLKTLPAHSDPVSAVHFNRDG 164
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 125/316 (39%), Gaps = 43/316 (13%)
Query: 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD 63
++++ H + + +++DG + SC D T V+ A+ GE+L + H V CC S D
Sbjct: 615 LVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTD 674
Query: 64 SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK----LAVITTDPFMELN 119
+ T S D+ K+WN TG + T++ S + LA ++D F++L
Sbjct: 675 DRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKL- 733
Query: 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
D + + + G +N + P ++ + S D +++WD +
Sbjct: 734 ---------WDLNQKECRNTMF--GHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSAN 782
Query: 180 ----------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229
L D + + + + +ADG+ + + +K L+D T L+
Sbjct: 783 ERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNK-IFLFDIHTSGLLGEI 841
Query: 230 VT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH 287
T + SP V+ Q + TD R+ ++ +GH
Sbjct: 842 HTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRS--------------KVADCRGH 887
Query: 288 FGPINALAFNPDGKRY 303
++ + F+PDG +
Sbjct: 888 LSWVHGVMFSPDGSSF 903
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 70/330 (21%), Positives = 121/330 (36%), Gaps = 88/330 (26%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS- 64
+K HE + ++ D + +C+ D +W + GE + TY H+ V CC + S
Sbjct: 659 IKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSH 718
Query: 65 -MTLITGSADQTAKLWNV-ETGAQLFTFNFDSPARSVDFAVGDKL-AVITTDPFMEL--- 118
+ L TGS+D KLW++ + + F + F+ DKL A + D ++L
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDA 778
Query: 119 -----NSAIHVKRIARDPADQGGESVLILK------------------------------ 143
+I+VK+ + D + +I+K
Sbjct: 779 TSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGLL 838
Query: 144 -----GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
G I + P N + A V +W+T++ + + GH + +
Sbjct: 839 GEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADC---RGHLSWVHGVM 895
Query: 199 KAADGSHFLTGSLDKSAKLWDA--------------------------------RTLELI 226
+ DGS FLT S D++ +LW+ R L+LI
Sbjct: 896 FSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLI 955
Query: 227 K------TYVTERPVNAVTMSPLLDHVVLG 250
Y+TE V+ +SP L ++ G
Sbjct: 956 NGRTGQIDYLTEAQVSCCCLSPHLQYIAFG 985
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 16/165 (9%)
Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197
S L+++ + A + + I S G D ++++ ETG+ L E H+ +
Sbjct: 613 SRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI---KAHEDEVLCC 669
Query: 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDAS 256
A + D T S+DK K+W++ T EL+ TY VN + H++L G
Sbjct: 670 AFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDC 729
Query: 257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 301
+ K +D +E + GH +N F+PD K
Sbjct: 730 FL------------KLWDLNQKECRNTMFGHTNSVNHCRFSPDDK 762
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/331 (20%), Positives = 125/331 (37%), Gaps = 67/331 (20%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL 67
GH + Y ++ L + +W D+ ++ RGH V S D +
Sbjct: 844 GHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSF 903
Query: 68 ITGSADQTAKLWNVETGA------------------QLFTFNFDSPAR---------SVD 100
+T S DQT +LW + ++ D R +D
Sbjct: 904 LTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQID 963
Query: 101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI-------NRAV 153
+ +++ P H++ IA D+ G ++ IL+ RI + V
Sbjct: 964 YLTEAQVSCCCLSP--------HLQYIAF--GDENG-AIEILELVNNRIFQSRFQHKKTV 1012
Query: 154 WGPL----NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 209
W +T+IS+ +DA +++W+ + K + GH++T+ + S L+
Sbjct: 1013 WHIQFTADEKTLISSSDDAEIQVWNWQLDKCIFLR----GHQETVKDF-RLLKNSRLLSW 1067
Query: 210 SLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE 269
S D + K+W+ T K +V + +S + H DA+ ++T +
Sbjct: 1068 SFDGTVKVWNIITGNKEKDFVCHQ---GTVLSCDISH-------DATKFSST---SADKT 1114
Query: 270 AKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
AK + L + ++GH G + AF+ D
Sbjct: 1115 AKIWSFDLLLPLHELRGHNGCVRCSAFSVDS 1145
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 25/188 (13%)
Query: 2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS 61
+ I ++GH+ + + K+ LL S + D T VW G + + H G V CD+S
Sbjct: 1042 KCIFLRGHQETVKDFRLLKNSRLL-SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDIS 1100
Query: 62 RDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNS 120
D+ + SAD+TAK+W+ + L + R F+V L D N
Sbjct: 1101 HDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDD-----NG 1155
Query: 121 AIHVKRIARDPADQGGESVLILKGPQ---------GRINRAVWGPLNRTIISAGEDAIVR 171
I + ++ GE +L L P G + + P + +ISAG ++
Sbjct: 1156 EIRIWNVS------NGE-LLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG--GYIK 1206
Query: 172 IWDTETGK 179
W+ TG+
Sbjct: 1207 WWNVVTGE 1214
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Query: 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217
N ++S D V++W+ TG KE D H+ T+ S + D + F + S DK+AK+
Sbjct: 1061 NSRLLSWSFDGTVKVWNIITGN--KEKDF-VCHQGTVLSCDISHDATKFSSTSADKTAKI 1117
Query: 218 WDARTLELIKTYVTERPVN-AVTMSPL-LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK 275
W + +L+ R N V S +D +L G D + + G E
Sbjct: 1118 W---SFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNG--ELLHLCA 1172
Query: 276 ILQEEIGGVKGHFGPINALAFNPDGK 301
L EE G H G + L F+PDGK
Sbjct: 1173 PLSEE--GAATHGGWVTDLCFSPDGK 1196
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 120/316 (37%), Gaps = 43/316 (13%)
Query: 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD 63
++++ H + + +++DG + SC D T V+ A+ GE+L + H V CC S D
Sbjct: 616 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 675
Query: 64 SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK----LAVITTDPFMELN 119
+ T SAD+ K+W+ TG + T++ S + LA + D F++L
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL- 734
Query: 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
D + + + G +N + P + + S D +R+WD +
Sbjct: 735 ---------WDLNQKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 783
Query: 180 ----------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229
L D + + + +ADG + + +K L+D T L+
Sbjct: 784 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEI 842
Query: 230 VT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH 287
T + SP V+ Q + D R ++ +GH
Sbjct: 843 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL--------------KVADCRGH 888
Query: 288 FGPINALAFNPDGKRY 303
++ + F+PDG +
Sbjct: 889 LSWVHGVMFSPDGSSF 904
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 112/280 (40%), Gaps = 50/280 (17%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS- 64
+K HE + ++ D + +C+ D +W + G+ + TY H+ V CC + S
Sbjct: 660 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 719
Query: 65 -MTLITGSADQTAKLWNV-ETGAQLFTFNFDSPARSVDFAVGDKL-AVITTDPFMEL--- 118
+ L TGS D KLW++ + + F + F+ D+L A + D + L
Sbjct: 720 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 779
Query: 119 -----NSAIHVKRI---ARDPADQ------------GGESVL------------------ 140
+I+VKR + DP + G+ ++
Sbjct: 780 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 839
Query: 141 --ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
I G I + P + + A V +W+ ++ LK +D GH + +
Sbjct: 840 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR--LKVADCR-GHLSWVHGVM 896
Query: 199 KAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 238
+ DGS FLT S D++ ++W+ + + V ++ ++ V
Sbjct: 897 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 936
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197
S L+++ + A + + I S G D ++++ ETG+ L + H+ +
Sbjct: 614 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI---KAHEDEVLCC 670
Query: 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDAS 256
A ++D S+ T S DK K+WD+ T +L+ TY VN + +H++L G
Sbjct: 671 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATG---- 726
Query: 257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
+ F K +D +E + GH +N F+PD
Sbjct: 727 --------SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD 761
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 131/324 (40%), Gaps = 53/324 (16%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL 67
GH + Y ++ L + +W D+ ++ RGH V S D +
Sbjct: 845 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSF 904
Query: 68 ITGSADQTAKLWNVETGAQ------------LFTFNFDSPARSVDFAVGDKLAV-----I 110
+T S DQT ++W + + +F N ++ +VD G +L I
Sbjct: 905 LTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQEN-ETMVLAVDNIRGLQLIAGKTGQI 963
Query: 111 TTDPFMELNSAI---HVKRIARDPADQGGESVLILKGPQGRI-------NRAV----WGP 156
P +++ H++ +A D+ G ++ I++ P R+ +AV +
Sbjct: 964 DYLPEAQVSCCCLSPHLEYVAF--GDEDG-AIKIIELPNNRVFSSGVGHKKAVRHIQFTA 1020
Query: 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 216
+T+IS+ ED+++++W+ +TG + H++T+ D S L+ S D + K
Sbjct: 1021 DGKTLISSSEDSVIQVWNWQTGDYVFLQ----AHQETVKDFRLLQD-SRLLSWSFDGTVK 1075
Query: 217 LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI 276
+W+ T + + + + VL + A + A K AK +
Sbjct: 1076 VWNVITGRIERDFTCHQGT------------VLSCAISSDATKFSSTSADK-TAKIWSFD 1122
Query: 277 LQEEIGGVKGHFGPINALAFNPDG 300
L + +KGH G + AF+ DG
Sbjct: 1123 LLSPLHELKGHNGCVRCSAFSLDG 1146
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 12/179 (6%)
Query: 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD 63
+ ++ H+ + + +D LL S + D T VW G + H G V C +S D
Sbjct: 1045 VFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD 1103
Query: 64 SMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAI 122
+ + SAD+TAK+W+ + + L + R F++ D + + T D N I
Sbjct: 1104 ATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL-DGILLATGDD----NGEI 1158
Query: 123 HVKRIARDPADQGGESVLILKGPQ---GRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
+ ++ + + +G G + + P ++T++SAG ++ W+ TG
Sbjct: 1159 RIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1215
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 34/185 (18%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL 67
GH++ + ++++ DG L S ++D VW G+ + + H V + +DS L
Sbjct: 1008 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RL 1065
Query: 68 ITGSADQTAKLWNVETG----------AQLFTFNFDSPARSVDFAVGDKLAVITTDPFME 117
++ S D T K+WNV TG + + S A DK A I + +
Sbjct: 1066 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS---FD 1122
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED-AIVRIWDTE 176
L S +H LKG G + + + L+ +++ G+D +RIW+
Sbjct: 1123 LLSPLHE-----------------LKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVS 1164
Query: 177 TGKLL 181
G+LL
Sbjct: 1165 DGQLL 1169
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 76/224 (33%), Gaps = 26/224 (11%)
Query: 16 LKYNKDGDLLFSCAKDHTPTVWFAD-----------NGERLGTYRGHNGAVWCCDVSRDS 64
+ Y + + C H V F D N + GH AV + D
Sbjct: 963 IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG 1022
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124
TLI+ S D ++WN +TG +F + +L + D +++ + I
Sbjct: 1023 KTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI-T 1081
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI RD QG + S D +IW + LL
Sbjct: 1082 GRIERD-----------FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD---LLSPL 1127
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
+ GH + A + DG TG + ++W+ +L+ +
Sbjct: 1128 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1171
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/316 (20%), Positives = 120/316 (37%), Gaps = 43/316 (13%)
Query: 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD 63
++++ H + + +++DG + SC D T V+ A+ GE+L + H V CC S D
Sbjct: 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 668
Query: 64 SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK----LAVITTDPFMELN 119
+ T SAD+ K+W+ TG + T++ S + LA + D F++L
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKL- 727
Query: 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179
D + + + G +N + P + + S D +R+WD +
Sbjct: 728 ---------WDLNQKECRNTMF--GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN 776
Query: 180 ----------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229
L D + + + +ADG + + +K L+D T L+
Sbjct: 777 ERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSGLLAEI 835
Query: 230 VT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH 287
T + SP V+ Q + D R ++ +GH
Sbjct: 836 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL--------------KVADCRGH 881
Query: 288 FGPINALAFNPDGKRY 303
++ + F+PDG +
Sbjct: 882 LSWVHGVMFSPDGSSF 897
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 112/280 (40%), Gaps = 50/280 (17%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS- 64
+K HE + ++ D + +C+ D +W + G+ + TY H+ V CC + S
Sbjct: 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSN 712
Query: 65 -MTLITGSADQTAKLWNV-ETGAQLFTFNFDSPARSVDFAVGDKL-AVITTDPFMEL--- 118
+ L TGS D KLW++ + + F + F+ D+L A + D + L
Sbjct: 713 HLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV 772
Query: 119 -----NSAIHVKRI---ARDPADQ------------GGESVL------------------ 140
+I+VKR + DP + G+ ++
Sbjct: 773 RSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLL 832
Query: 141 --ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA 198
I G I + P + + A V +W+ ++ LK +D GH + +
Sbjct: 833 AEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR--LKVADCR-GHLSWVHGVM 889
Query: 199 KAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 238
+ DGS FLT S D++ ++W+ + + V ++ ++ V
Sbjct: 890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVV 929
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL 197
S L+++ + A + + I S G D ++++ ETG+ L + H+ +
Sbjct: 607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI---KAHEDEVLCC 663
Query: 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDAS 256
A ++D S+ T S DK K+WD+ T +L+ TY VN + +H++L G
Sbjct: 664 AFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATG---- 719
Query: 257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
+ F K +D +E + GH +N F+PD
Sbjct: 720 --------SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD 754
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 131/324 (40%), Gaps = 53/324 (16%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL 67
GH + Y ++ L + +W D+ ++ RGH V S D +
Sbjct: 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSF 897
Query: 68 ITGSADQTAKLWNVETGAQ------------LFTFNFDSPARSVDFAVGDKLAV-----I 110
+T S DQT ++W + + +F N ++ +VD G +L I
Sbjct: 898 LTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQEN-ETMVLAVDNIRGLQLIAGKTGQI 956
Query: 111 TTDPFMELNSAI---HVKRIARDPADQGGESVLILKGPQGRI-------NRAV----WGP 156
P +++ H++ +A D+ G ++ I++ P R+ +AV +
Sbjct: 957 DYLPEAQVSCCCLSPHLEYVAF--GDEDG-AIKIIELPNNRVFSSGVGHKKAVRHIQFTA 1013
Query: 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 216
+T+IS+ ED+++++W+ +TG + H++T+ D S L+ S D + K
Sbjct: 1014 DGKTLISSSEDSVIQVWNWQTGDYVFLQ----AHQETVKDFRLLQD-SRLLSWSFDGTVK 1068
Query: 217 LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI 276
+W+ T + + + + VL + A + A K AK +
Sbjct: 1069 VWNVITGRIERDFTCHQGT------------VLSCAISSDATKFSSTSADK-TAKIWSFD 1115
Query: 277 LQEEIGGVKGHFGPINALAFNPDG 300
L + +KGH G + AF+ DG
Sbjct: 1116 LLSPLHELKGHNGCVRCSAFSLDG 1139
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 78/179 (43%), Gaps = 12/179 (6%)
Query: 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD 63
+ ++ H+ + + +D LL S + D T VW G + H G V C +S D
Sbjct: 1038 VFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSD 1096
Query: 64 SMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAI 122
+ + SAD+TAK+W+ + + L + R F++ D + + T D N I
Sbjct: 1097 ATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSL-DGILLATGDD----NGEI 1151
Query: 123 HVKRIARDPADQGGESVLILKGPQ---GRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
+ ++ + + +G G + + P ++T++SAG ++ W+ TG
Sbjct: 1152 RIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATG 1208
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 79/185 (42%), Gaps = 34/185 (18%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL 67
GH++ + ++++ DG L S ++D VW G+ + + H V + +DS L
Sbjct: 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RL 1058
Query: 68 ITGSADQTAKLWNVETG----------AQLFTFNFDSPARSVDFAVGDKLAVITTDPFME 117
++ S D T K+WNV TG + + S A DK A I + +
Sbjct: 1059 LSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS---FD 1115
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED-AIVRIWDTE 176
L S +H LKG G + + + L+ +++ G+D +RIW+
Sbjct: 1116 LLSPLHE-----------------LKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVS 1157
Query: 177 TGKLL 181
G+LL
Sbjct: 1158 DGQLL 1162
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 76/224 (33%), Gaps = 26/224 (11%)
Query: 16 LKYNKDGDLLFSCAKDHTPTVWFAD-----------NGERLGTYRGHNGAVWCCDVSRDS 64
+ Y + + C H V F D N + GH AV + D
Sbjct: 956 IDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADG 1015
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124
TLI+ S D ++WN +TG +F + +L + D +++ + I
Sbjct: 1016 KTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI-T 1074
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
RI RD QG + S D +IW + LL
Sbjct: 1075 GRIERD-----------FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFD---LLSPL 1120
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
+ GH + A + DG TG + ++W+ +L+ +
Sbjct: 1121 HELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHS 1164
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 88/206 (42%), Gaps = 56/206 (27%)
Query: 18 YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK 77
++ DG L + A+D +W +N + + +GH ++ D L++GS D+T +
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190
Query: 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 137
+W++ TG T + + +V + GD K IA
Sbjct: 191 IWDLRTGQCSLTLSIEDGVTTVAVSPGDG------------------KYIA--------- 223
Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE----TGHKKT 193
G ++RA VR+WD+ETG L++ D E TGHK +
Sbjct: 224 --------AGSLDRA-----------------VRVWDSETGFLVERLDSENESGTGHKDS 258
Query: 194 ITSLAKAADGSHFLTGSLDKSAKLWD 219
+ S+ DG ++GSLD+S KLW+
Sbjct: 259 VYSVVFTRDGQSVVSGSLDRSVKLWN 284
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 59/253 (23%), Positives = 95/253 (37%), Gaps = 48/253 (18%)
Query: 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI 110
H V C S D L TG ++T +++ V G+ + + DS A
Sbjct: 63 HTSVVCCVKFSNDGEYLATG-CNKTTQVYRVSDGSLVARLSDDSAAN------------- 108
Query: 111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG--RINRAVWGPLNRTIISAGEDA 168
+DP E++ P I + P + + + ED
Sbjct: 109 ------------------KDP-----ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR 145
Query: 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
++RIWD E K++ GH++ I SL G ++GS D++ ++WD RT + T
Sbjct: 146 LIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT 202
Query: 229 YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHF 288
E V V +SP + G D + R E F + L E GH
Sbjct: 203 LSIEDGVTTVAVSPGDGKYIAAGSLDRAV------RVWDSETGFLVERLDSENESGTGHK 256
Query: 289 GPINALAFNPDGK 301
+ ++ F DG+
Sbjct: 257 DSVYSVVFTRDGQ 269
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 89/230 (38%), Gaps = 58/230 (25%)
Query: 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD 63
++++GHE+ + L Y GD L S + D T +W G+ T +G D
Sbjct: 159 MILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD 218
Query: 64 SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIH 123
+ GS D+ ++W+ ETG F+
Sbjct: 219 GKYIAAGSLDRAVRVWDSETG------------------------------FL------- 241
Query: 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE 183
V+R+ D ++ G G + + V+ ++++S D V++W+ + +
Sbjct: 242 VERL--DSENESG------TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN--NK 291
Query: 184 SDKET-----------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222
SD +T GHK + S+A + + L+GS D+ WD ++
Sbjct: 292 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 341
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG------------TYRGHNGAV 55
GH+ + + + +DG + S + D + +W N TY GH V
Sbjct: 254 GHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV 313
Query: 56 WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90
+++ +++GS D+ W+ ++G L
Sbjct: 314 LSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLML 348
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 91/210 (43%), Gaps = 19/210 (9%)
Query: 12 PLTY-LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG 70
P Y L + D + FSC D VW N + ++GH C D+S D L TG
Sbjct: 142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTG 201
Query: 71 SADQTAKLWNVETGAQLFTFNFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIAR 129
D T + W++ G QL +F S S+ + G+ LAV +E+ +HV + +
Sbjct: 202 GLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEV---LHVNKPDK 258
Query: 130 DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG 189
VL LK + + +S G+D ++ W T G + +S + +
Sbjct: 259 YQLHLHESCVLSLK----------FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS- 307
Query: 190 HKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
++ S + D + +TGS DK A +++
Sbjct: 308 ---SVLSCDISVDDKYIVTGSGDKKATVYE 334
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 215
P ++ S D + +WD L+++ GH + + + DG+ TG LD +
Sbjct: 151 PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQ---GHTDGASCIDISNDGTKLWTGGLDNTV 207
Query: 216 KLWDAR 221
+ WD R
Sbjct: 208 RSWDLR 213
Score = 34.7 bits (78), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI 68
HE + LK+ G S KD+ W G + + + +V CD+S D ++
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISVDDKYIV 322
Query: 69 TGSADQTAKLWNV 81
TGS D+ A ++ V
Sbjct: 323 TGSGDKKATVYEV 335
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 117/278 (42%), Gaps = 26/278 (9%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRD 63
+ GH+ + LKY G +L S + D T VW G + GHN V C D+ ++
Sbjct: 158 LSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 64 SMTLITGSADQTAKLWNVETGAQL--------FTFNFDSPARSVDFA---VGDKLAVITT 112
++TGS D T +W + + + + F +P + F G +V T
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276
Query: 113 DPF--MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170
+ ++ + I D A + + IL G RI ++ + ISA D +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQM--KCLYILSGHTDRIYSTIYDHERKRCISASMDTTI 334
Query: 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230
RIWD E G+L+ T + L + +D ++ + D S + WDA +Y
Sbjct: 335 RIWDLENGELMYTLQGHTA----LVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSY- 388
Query: 231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 268
++A+T + D++++ G ++ + R+GK
Sbjct: 389 HHTNLSAITTFYVSDNILVSGSENQFNIYNL--RSGKL 424
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 115/270 (42%), Gaps = 32/270 (11%)
Query: 6 MKGHERP-LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
++GH +T L++ + + + + A D V+ + N + L GH+G VW +
Sbjct: 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 174
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIH 123
+ L++GS D+T ++W+++ G F +S R +D + I T ++ +H
Sbjct: 175 I-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG---SRDNTLH 230
Query: 124 VKRIARDPA--DQGGES---------------VLILKGPQGRINRAVWGPLNRTIISAGE 166
V ++ ++ + D G E V +L+G + R V G N ++S
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV-RTVSGHGN-IVVSGSY 288
Query: 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226
D + +WD K L +GH I S + ++ S+D + ++WD EL+
Sbjct: 289 DNTLIVWDVAQMKCLY---ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 345
Query: 227 KTYVTERPVNAVTMSPLLDHVVLGGGQDAS 256
Y + V + L D ++ D S
Sbjct: 346 --YTLQGHTALVGLLRLSDKFLVSAAADGS 373
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
++ GH + Y+ + S + D T +W +NGE + T +GH V +S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--D 362
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109
L++ +AD + + W+ ++ F+++ + + F V D + V
Sbjct: 363 KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 407
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 95/237 (40%), Gaps = 52/237 (21%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
++GH ++ + + +G+ S + DH+ +W NG+ + GH V S D+
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
+++G D ++WNV+ G + T + A D ++ + P ++
Sbjct: 123 QIVSGGRDNALRVWNVK-GECMHTLSRG--------AHTDWVSCVRFSPSLD-------- 165
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
P+ I+S G D +V++WD TG+L+ +
Sbjct: 166 -----------------------------APV---IVSGGWDNLVKVWDLATGRLVTD-- 191
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242
GH +TS+ + DGS + D A+LWD E + P+N + SP
Sbjct: 192 -LKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGAPINQICFSP 247
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 19/143 (13%)
Query: 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221
+SA D +R+W+ + G+ K GH K + S+A + D ++G D + ++W+ +
Sbjct: 83 VSASWDHSLRLWNLQNGQCQY---KFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK 139
Query: 222 --TLELIKTYVTERPVNAVTMSPLLDH-VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 278
+ + V+ V SP LD V++ GG D K +D
Sbjct: 140 GECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDN-------------LVKVWDLATG 186
Query: 279 EEIGGVKGHFGPINALAFNPDGK 301
+ +KGH + ++ +PDG
Sbjct: 187 RLVTDLKGHTNYVTSVTVSPDGS 209
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 100/268 (37%), Gaps = 33/268 (12%)
Query: 44 RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVD--F 101
+L +RG ++ C + +++ S D+T W ++ P R ++
Sbjct: 8 QLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHS 67
Query: 102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161
A +A+ F S H R+ Q G+ G + + P NR I
Sbjct: 68 AFVSDVALSNNGNFAVSASWDHSLRLWNL---QNGQCQYKFLGHTKDVLSVAFSPDNRQI 124
Query: 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221
+S G D +R+W+ + + S + + + D ++G D K+WD
Sbjct: 125 VSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA 184
Query: 222 TLELI------KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK 275
T L+ YVT +VT+SP D S ++D A+ +D
Sbjct: 185 TGRLVTDLKGHTNYVT-----SVTVSP-----------DGSLCASSDKDG---VARLWDL 225
Query: 276 ILQEEIGGVKGHFGPINALAFNPDGKRY 303
E + + PIN + F+P+ RY
Sbjct: 226 TKGEALSEMAAG-APINQICFSPN--RY 250
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 58/156 (37%), Gaps = 11/156 (7%)
Query: 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80
D ++ S D+ VW G + +GH V VS D + D A+LW+
Sbjct: 165 DAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Query: 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNSAIHVKRIARDPADQGGE 137
+ G L +P + F+ T+ +L + + +A P QG +
Sbjct: 225 LTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELA--PEHQGSK 282
Query: 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
++ P+ W T+ S D ++R+W
Sbjct: 283 KIV----PE--CVSIAWSADGSTLYSGYTDNVIRVW 312
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/278 (23%), Positives = 116/278 (41%), Gaps = 26/278 (9%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRD 63
+ GH+ + LKY G +L S + D T VW G + GHN V C D+ ++
Sbjct: 158 LSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 64 SMTLITGSADQTAKLWNVETGAQL--------FTFNFDSPARSVDFA---VGDKLAVITT 112
++TGS D T +W + + + + F +P + F G +V T
Sbjct: 217 IKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTV 276
Query: 113 DPF--MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170
+ ++ + I D A + + IL G RI ++ + ISA D +
Sbjct: 277 SGHGNIVVSGSYDNTLIVWDVAQX--KCLYILSGHTDRIYSTIYDHERKRCISASXDTTI 334
Query: 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230
RIWD E G+L T + L + +D ++ + D S + WDA +Y
Sbjct: 335 RIWDLENGELXYTLQGHTA----LVGLLRLSD-KFLVSAAADGSIRGWDANDYSRKFSY- 388
Query: 231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 268
++A+T + D++++ G ++ + R+GK
Sbjct: 389 HHTNLSAITTFYVSDNILVSGSENQFNIYNL--RSGKL 424
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/270 (22%), Positives = 113/270 (41%), Gaps = 32/270 (11%)
Query: 6 MKGHERP-LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
++GH +T L++ + + + + A D V+ + N + L GH+G VW +
Sbjct: 117 LRGHXTSVITCLQF--EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 174
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIH 123
+ L++GS D+T ++W+++ G F +S R +D + I T ++ +H
Sbjct: 175 I-LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTG---SRDNTLH 230
Query: 124 VKRIARDPA--DQGGES---------------VLILKGPQGRINRAVWGPLNRTIISAGE 166
V ++ ++ + D G E V +L+G + R V G N ++S
Sbjct: 231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASV-RTVSGHGN-IVVSGSY 288
Query: 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226
D + +WD K L +GH I S + ++ S D + ++WD EL
Sbjct: 289 DNTLIVWDVAQXKCLY---ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGEL- 344
Query: 227 KTYVTERPVNAVTMSPLLDHVVLGGGQDAS 256
Y + V + L D ++ D S
Sbjct: 345 -XYTLQGHTALVGLLRLSDKFLVSAAADGS 373
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Query: 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
++ GH + Y+ + S + D T +W +NGE T +GH V +S
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLS--D 362
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109
L++ +AD + + W+ ++ F+++ + + F V D + V
Sbjct: 363 KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILV 407
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 17/228 (7%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
M GH+ ++ + +GD + S ++D T +W G + T+ GH V ++D
Sbjct: 188 MHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247
Query: 66 TLITGSADQTAKLWNVETG------------AQLFTFNFDSPARSVDFAVGDKLAVITTD 113
+ + S DQT ++W V T + ++ +S S+ A G + +
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKK-SGK 306
Query: 114 PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
P L S K I G ++ L G + ++ + I+S +D +R+W
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Query: 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221
D + + +K + H+ +TSL + +TGS+D++ K+W+ R
Sbjct: 366 DYKNKRCMKTLN---AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 104/261 (39%), Gaps = 22/261 (8%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+KGH + + ++ G LL SC+ D T +W E + T GH+ V + +
Sbjct: 146 LKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD 205
Query: 66 TLITGSADQTAKLWNVETGAQLFTF------------NFDSP--ARSVDFAVGDKLAVIT 111
+++ S D+T K+W V+TG + TF N D A + V T
Sbjct: 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT 265
Query: 112 TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 171
+ EL HV + S+ G + + + GP ++S D ++
Sbjct: 266 KECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP-GPF---LLSGSRDKTIK 321
Query: 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-V 230
+WD TG L GH + + + G L+ + DK+ ++WD + +KT
Sbjct: 322 MWDVSTGMCLMTL---VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 378
Query: 231 TERPVNAVTMSPLLDHVVLGG 251
E V ++ +VV G
Sbjct: 379 HEHFVTSLDFHKTAPYVVTGS 399
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 82/220 (37%), Gaps = 55/220 (25%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH P+T + ++ ++ S ++D T VW + G+ T +GH +V
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L + SAD T KLW DF
Sbjct: 164 LLASCSADMTIKLW--------------------DF------------------------ 179
Query: 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185
QG E + + G ++ P I+SA D +++W+ +TG +K
Sbjct: 180 --------QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF- 230
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 225
TGH++ + + DG+ + S D++ ++W T E
Sbjct: 231 --TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 268
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 39/131 (29%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG----------------------K 179
L G + + R ++ P+ ++SA EDA +++WD ETG K
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 180 LLKESDKET-----------------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222
LL + GH ++S++ +G H ++ S DK+ K+W+ +T
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223
Query: 223 LELIKTYVTER 233
+KT+ R
Sbjct: 224 GYCVKTFTGHR 234
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%)
Query: 1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
M + + GH+ + + ++ G + SCA D T VW N + T H V D
Sbjct: 329 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 388
Query: 61 SRDSMTLITGSADQTAKLWNV 81
+ + ++TGS DQT K+W
Sbjct: 389 HKTAPYVVTGSVDQTVKVWEC 409
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 20/204 (9%)
Query: 16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT 75
L+Y D + S +D+T +W + E GH G+V C + D +ITGS+D T
Sbjct: 139 LQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC--LQYDERVIITGSSDST 194
Query: 76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 135
++W+V TG L T A + + + V + + +I V +A P D
Sbjct: 195 VRVWDVNTGEMLNTLIHHCEA-VLHLRFNNGMMVTCSK-----DRSIAVWDMA-SPTDIT 247
Query: 136 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 195
VL+ G + +N + ++ I+SA D +++W+T T + ++ + GHK+ I
Sbjct: 248 LRRVLV--GHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLN---GHKRGIA 300
Query: 196 SLAKAADGSHFLTGSLDKSAKLWD 219
L ++GS D + +LWD
Sbjct: 301 CLQYR--DRLVVSGSSDNTIRLWD 322
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 101/242 (41%), Gaps = 25/242 (10%)
Query: 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
++ GH + L+Y D ++ + + D T VW + GE L T H AV + ++
Sbjct: 168 ILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNN 223
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124
++T S D++ +W++ + D R V VG + AV D + +
Sbjct: 224 GMMVTCSKDRSIAVWDMASPT-------DITLRRV--LVGHRAAVNVVDFDDKYIVSASG 274
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
R + E V L G + I A +R ++S D +R+WD E G L+
Sbjct: 275 DRTIKVWNTSTCEFVRTLNGHKRGI--ACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL 332
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL 244
+ GH++ + + D ++G+ D K+WD L+ P + + L+
Sbjct: 333 E---GHEELVRCI--RFDNKRIVSGAYDGKIKVWD-----LVAALDPRAPAGTLCLRTLV 382
Query: 245 DH 246
+H
Sbjct: 383 EH 384
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 18/178 (10%)
Query: 1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV 60
+R +L+ GH + + + D + S + D T VW E + T GH + C
Sbjct: 248 LRRVLV-GHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY 304
Query: 61 SRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELN 119
RD + +++GS+D T +LW++E GA L + R + F D +++ +
Sbjct: 305 -RDRL-VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF---DNKRIVSG----AYD 355
Query: 120 SAIHVKRI--ARDPADQGGESVL-ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174
I V + A DP G L L GR+ R + I+S+ D + IWD
Sbjct: 356 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIWD 411
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217
++ I+S D ++IWD T L+ TGH ++ L D +TGS D + ++
Sbjct: 143 DQKIVSGLRDNTIKIWDKNT---LECKRILTGHTGSVLCLQ--YDERVIITGSSDSTVRV 197
Query: 218 WDARTLELIKTYV 230
WD T E++ T +
Sbjct: 198 WDVNTGEMLNTLI 210
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 95/214 (44%), Gaps = 17/214 (7%)
Query: 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRDSMT 66
H L+ + + + + D T +W ++G+ L ++ GH V C D+ S T
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 67 LITGSADQTAKLWNVETGAQLFTFN-FDSPARSVD-FAVGDKLAVITTDPFMELNSAIHV 124
++G D+ A +W++ +G + F +S SV + GD A + D L +
Sbjct: 213 FVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL----YD 268
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184
R R+ A ES++ ++ ++ G R + + D + +WD G +
Sbjct: 269 LRADREVAIYSKESIIF---GASSVDFSLSG---RLLFAGYNDYTINVWDVLKGSRVS-- 320
Query: 185 DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218
GH+ +++L + DG+ F +GS D + ++W
Sbjct: 321 -ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 5/116 (4%)
Query: 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
I++A D +WD E+G+LL +S G LA + G+ F++G DK A +WD
Sbjct: 169 ILTASGDGTCALWDVESGQLL-QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
Query: 221 RTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK 275
R+ + ++ + T E VN+V P D G D + D RA + E + K
Sbjct: 228 RSGQCVQAFETHESDVNSVRYYPSGD--AFASGSDDATCRLYDLRADR-EVAIYSK 280
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/254 (20%), Positives = 88/254 (34%), Gaps = 66/254 (25%)
Query: 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI 110
H + C + M ++T S D T LW+VE+G L +F+ G V+
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFH------------GHGADVL 200
Query: 111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170
D P++ G T +S G D
Sbjct: 201 CLDLA---------------PSETG-----------------------NTFVSGGCDKKA 222
Query: 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230
+WD +G+ ++ + H+ + S+ G F +GS D + +L+D R + Y
Sbjct: 223 MVWDMRSGQCVQAFET---HESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYS 279
Query: 231 TERPV-NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 289
E + A ++ L +L G + + D G + F GH
Sbjct: 280 KESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILF------------GHEN 327
Query: 290 PINALAFNPDGKRY 303
++ L +PDG +
Sbjct: 328 RVSTLRVSPDGTAF 341
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVW 37
R ++ GHE ++ L+ + DG S + DHT VW
Sbjct: 318 RVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 133/310 (42%), Gaps = 37/310 (11%)
Query: 6 MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
++GH +T L + +LL S ++D T W + ++ G +++GH+ V C
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60 VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
++ D ++ S D+T +LW+V TG F S SVD + K ++I +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
+ I V I G+ + L G +++ P + TIISAG D +V+
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
W+ ++ E+D GH I +L + DG+ + D LW+ + + T +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-I 291
V ++ SP + L +A T T + + ++ L+ E G P
Sbjct: 238 DEVFSLAFSP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHA 289
Query: 292 NALAFNPDGK 301
+LA++ DG+
Sbjct: 290 VSLAWSADGQ 299
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 39/217 (17%), Positives = 73/217 (33%), Gaps = 49/217 (22%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV------- 60
GH+ + + +K ++ S ++D T VW G+ L T GHN W V
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND--WVSQVRVVPNEK 161
Query: 61 -SRDSMTLITGSADQTAKLWNVET-------------------------------GAQLF 88
DS+T+I+ D+ K WN+ ++
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 89 TFNFDSPARSVDFAVGDKLAVITTDP---FMELNSAIHVKRIARDPA----DQGGESVLI 141
+N + + D++ + P ++ +A +K + DP D E
Sbjct: 222 LWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY 281
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
+ W +T+ + D ++R+W T
Sbjct: 282 SAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 88/220 (40%), Gaps = 22/220 (10%)
Query: 50 GHNGAVWCCDVSRDSMT-LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108
GH G C D T LITGS DQT LW+V TG ++ F + P+ + +
Sbjct: 155 GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214
Query: 109 VITTDPFMELNSAIHVK----RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164
+ + F+ + V+ RI +V G +G IN + P + +
Sbjct: 215 SLNANMFISGSCDTTVRLWDLRIT-------SRAVRTYHGHEGDINSVKFFPDGQRFGTG 267
Query: 165 GEDAIVRIWDTETGKLL----KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
+D R++D TG L +E D+ +TS+A + G G + +WD
Sbjct: 268 SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT 327
Query: 221 RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTT 260
E++ T + + +S LG D SA+ T
Sbjct: 328 LLAEMVLNLGTLQNSHEGRIS------CLGLSSDGSALCT 361
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 17/229 (7%)
Query: 47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-ARSVDFAV-G 104
T +GH+G V+ D + + +++ S D +WN T + P FA G
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 105 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILKGPQGRINRAVWGPLNRT-II 162
+A L+SA + ++ G V +L G +G + + P T +I
Sbjct: 121 QSVAC------GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLI 174
Query: 163 SAGEDAIVRIWDTETGKLLK--ESDKETGHKKTITSLA-KAADGSHFLTGSLDKSAKLWD 219
+ D +WD TG+ + S+ +GH + SL+ + + + F++GS D + +LWD
Sbjct: 175 TGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWD 234
Query: 220 AR-TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG 266
R T ++TY E +N+V P D G G D D R G
Sbjct: 235 LRITSRAVRTYHGHEGDINSVKFFP--DGQRFGTGSDDGTCRLFDMRTG 281
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 83/215 (38%), Gaps = 48/215 (22%)
Query: 7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLGTYRGHNGAVWCCDVSRDS 64
GH + L N + ++ S + D T +W + TY GH G + D
Sbjct: 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124
TGS D T +L+++ TG QL +N + P R+ ++L ++T+ F
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNRE-PDRN-----DNELPIVTSVAFS-------- 307
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL-LKE 183
+ G R + + + +WDT ++ L
Sbjct: 308 -----------------ISG--------------RLLFAGYSNGDCYVWDTLLAEMVLNL 336
Query: 184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218
+ H+ I+ L ++DGS TGS DK+ K+W
Sbjct: 337 GTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 133/310 (42%), Gaps = 37/310 (11%)
Query: 6 MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
++GH +T L + +LL S ++D T W + ++ G +++GH+ V C
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60 VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
++ D ++ S D+T +LW+V TG F S SVD + K ++I +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
+ I V I G+ + L G +++ P + TIISAG D +V+
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
W+ ++ E+D GH I +L + DG+ + D LW+ + + T +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-I 291
V ++ SP + L +A T T + + ++ L+ E G P
Sbjct: 238 DEVFSLAFSP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 292 NALAFNPDGK 301
+LA++ DG+
Sbjct: 290 VSLAWSADGQ 299
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 133/310 (42%), Gaps = 37/310 (11%)
Query: 6 MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
++GH +T L + +LL S ++D T W + ++ G +++GH+ V C
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60 VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
++ D ++ S D+T +LW+V TG F S SVD + K ++I +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
+ I V I G+ + L G +++ P + TIISAG D +V+
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
W+ ++ E+D GH I +L + DG+ + D LW+ + + T +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-I 291
V ++ SP + L +A T T + + ++ L+ E G P
Sbjct: 238 DEVFSLAFSP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 292 NALAFNPDGK 301
+LA++ DG+
Sbjct: 290 VSLAWSADGQ 299
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 49/217 (22%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV------- 60
GH+ + + +K ++ S ++D T VW G+ L T GHN W V
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND--WVSQVRVVPNEK 161
Query: 61 -SRDSMTLITGSADQTAKLWNVET-------------------------------GAQLF 88
DS+T+I+ D+ K WN+ ++
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 89 TFNFDSPARSVDFAVGDKLAVITTDP---FMELNSAIHVKRIARDPA----DQGGESVLI 141
+N + + D++ + P ++ +A +K + DP D E
Sbjct: 222 LWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY 281
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
K + W +T+ + D ++R+W T
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 133/310 (42%), Gaps = 37/310 (11%)
Query: 6 MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
++GH +T L + +LL S ++D T W + ++ G +++GH+ V C
Sbjct: 7 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 66
Query: 60 VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
++ D ++ S D+T +LW+V TG F S SVD + K ++I +
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 121
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
+ I V I G+ + L G +++ P + TIISAG D +V+
Sbjct: 122 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 174
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
W+ ++ E+D GH I +L + DG+ + D LW+ + + T +
Sbjct: 175 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 231
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-I 291
V ++ SP + L +A T T + + ++ L+ E G P
Sbjct: 232 DEVFSLAFSP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 283
Query: 292 NALAFNPDGK 301
+LA++ DG+
Sbjct: 284 VSLAWSADGQ 293
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 49/217 (22%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV------- 60
GH+ + + +K ++ S ++D T VW G+ L T GHN W V
Sbjct: 99 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND--WVSQVRVVPNEK 155
Query: 61 -SRDSMTLITGSADQTAKLWNVET-------------------------------GAQLF 88
DS+T+I+ D+ K WN+ ++
Sbjct: 156 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 215
Query: 89 TFNFDSPARSVDFAVGDKLAVITTDP---FMELNSAIHVKRIARDPA----DQGGESVLI 141
+N + + D++ + P ++ +A +K + DP D E
Sbjct: 216 LWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY 275
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
K + W +T+ + D ++R+W T
Sbjct: 276 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 312
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 133/310 (42%), Gaps = 37/310 (11%)
Query: 6 MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
++GH +T L + +LL S ++D T W + ++ G +++GH+ V C
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60 VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
++ D ++ S D+T +LW+V TG F S SVD + K ++I +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD--IDKKASMIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
+ I V I G+ + L G +++ P + TIISAG D +V+
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
W+ ++ E+D GH I +L + DG+ + D LW+ + + T +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-I 291
V ++ SP + L +A T T + + ++ L+ E G P
Sbjct: 238 DEVFSLAFSP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 292 NALAFNPDGK 301
+LA++ DG+
Sbjct: 290 VSLAWSADGQ 299
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/217 (18%), Positives = 74/217 (34%), Gaps = 49/217 (22%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV------- 60
GH+ + + +K ++ S ++D T VW G+ L T GHN W V
Sbjct: 105 GHKSDVMSVDIDKKASMIISGSRDKTIKVWTI-KGQCLATLLGHND--WVSQVRVVPNEK 161
Query: 61 -SRDSMTLITGSADQTAKLWNVET-------------------------------GAQLF 88
DS+T+I+ D+ K WN+ ++
Sbjct: 162 ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIM 221
Query: 89 TFNFDSPARSVDFAVGDKLAVITTDP---FMELNSAIHVKRIARDPA----DQGGESVLI 141
+N + + D++ + P ++ +A +K + DP D E
Sbjct: 222 LWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGY 281
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
K + W +T+ + D ++R+W T
Sbjct: 282 SKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 69/316 (21%), Positives = 123/316 (38%), Gaps = 26/316 (8%)
Query: 5 LMKGHERPLTYL------KYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-------RGH 51
+++GH +T + K N+D +L S ++D T +W E+ G + GH
Sbjct: 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH 75
Query: 52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVI 110
N V +S+++ I+ S D+T +LW++ TG F S SV F+ D ++
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS-PDNRQIL 134
Query: 111 TTDPFMEL---NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167
+ E+ N K + + + + P + V P S G D
Sbjct: 135 SAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV-QPFAPYFASVGWD 193
Query: 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-I 226
+++W+T + H+ + L+ + +G + TG DK +WD L
Sbjct: 194 GRLKVWNTN----FQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQ 249
Query: 227 KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG 286
+ + +N + +P L V +G Q + I + E G KG
Sbjct: 250 REFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAE--GQKG 307
Query: 287 HFGPINALAFNPDGKR 302
+LA+N GK+
Sbjct: 308 KNPQCTSLAWNALGKK 323
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 120/306 (39%), Gaps = 30/306 (9%)
Query: 6 MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVW-----FADNGERLGTYRGHNGAVWCCD 59
+KGH +T + D++ S ++D T +W + G RGH+ V
Sbjct: 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 93
Query: 60 VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFME 117
+S D ++GS D T +LW++ TG F SV F+ ++ V + D ++
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
L + + V + + P N I+S G D +V++W+
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---------NPIIVSCGWDKLVKVWNLAN 204
Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
KL TG+ T+T + DGS +G D A LWD + + T +NA
Sbjct: 205 CKLKTNHIGHTGYLNTVTV---SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 261
Query: 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP--INALA 295
+ SP + L A T + E K L++E+ P +LA
Sbjct: 262 LCFSP--NRYWL------CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA 313
Query: 296 FNPDGK 301
++ DG+
Sbjct: 314 WSADGQ 319
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 96/253 (37%), Gaps = 41/253 (16%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
++GH ++ + + DG S + D T +W G + GH V S D+
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141
Query: 66 TLITGSADQTAKLWNV----------ETGAQLFTFNFDSPARSVDFAVG---DKLAVITT 112
+++GS D+T KLWN E+ ++ + SP S V DKL +
Sbjct: 142 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
Query: 113 DPFMELNS-----AIHVKRIARDP----ADQGGE--SVLILKGPQGR----------INR 151
+L + ++ + P GG+ ++ +G+ IN
Sbjct: 202 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 261
Query: 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET------GHKKTITSLAKAADGSH 205
+ P NR + A ++IWD E ++ E +E TSLA +ADG
Sbjct: 262 LCFSP-NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 320
Query: 206 FLTGSLDKSAKLW 218
G D ++W
Sbjct: 321 LFAGYTDNLVRVW 333
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 11/177 (6%)
Query: 7 KGHERPLTYLKY--NKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
+ H ++ +++ N ++ SC D VW N + + GH G + VS D
Sbjct: 168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 227
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNSA 121
+G D A LW++ G L+T + ++ F+ T P +L
Sbjct: 228 SLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGK 287
Query: 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
I V + ++ ++ + PQ W +T+ + D +VR+W G
Sbjct: 288 IIVDELKQEVISTSSKA----EPPQ--CTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 72/306 (23%), Positives = 120/306 (39%), Gaps = 30/306 (9%)
Query: 6 MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVW-----FADNGERLGTYRGHNGAVWCCD 59
+KGH +T + D++ S ++D T +W + G RGH+ V
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 60 VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFME 117
+S D ++GS D T +LW++ TG F SV F+ ++ V + D ++
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET 177
L + + V + + P N I+S G D +V++W+
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSS---------NPIIVSCGWDKLVKVWNLAN 181
Query: 178 GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA 237
KL TG+ T+T + DGS +G D A LWD + + T +NA
Sbjct: 182 CKLKTNHIGHTGYLNTVTV---SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 238
Query: 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP--INALA 295
+ SP + L A T + E K L++E+ P +LA
Sbjct: 239 LCFSP--NRYWL------CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLA 290
Query: 296 FNPDGK 301
++ DG+
Sbjct: 291 WSADGQ 296
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 96/253 (37%), Gaps = 41/253 (16%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
++GH ++ + + DG S + D T +W G + GH V S D+
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 118
Query: 66 TLITGSADQTAKLWNV----------ETGAQLFTFNFDSPARSVDFAVG---DKLAVITT 112
+++GS D+T KLWN E+ ++ + SP S V DKL +
Sbjct: 119 QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
Query: 113 DPFMELNS-----AIHVKRIARDP----ADQGGE--SVLILKGPQGR----------INR 151
+L + ++ + P GG+ ++ +G+ IN
Sbjct: 179 LANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 238
Query: 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET------GHKKTITSLAKAADGSH 205
+ P NR + A ++IWD E ++ E +E TSLA +ADG
Sbjct: 239 LCFSP-NRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT 297
Query: 206 FLTGSLDKSAKLW 218
G D ++W
Sbjct: 298 LFAGYTDNLVRVW 310
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 11/177 (6%)
Query: 7 KGHERPLTYLKY--NKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64
+ H ++ +++ N ++ SC D VW N + + GH G + VS D
Sbjct: 145 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG 204
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNSA 121
+G D A LW++ G L+T + ++ F+ T P +L
Sbjct: 205 SLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGK 264
Query: 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
I V + ++ ++ + PQ W +T+ + D +VR+W G
Sbjct: 265 IIVDELKQEVISTSSKA----EPPQ--CTSLAWSADGQTLFAGYTDNLVRVWQVTIG 315
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 29/227 (12%)
Query: 76 AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
+LWN ET ++ + ++P R+ F ++ +D F RI R
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
GE V+ + I P ++S +D V++W+ E L+++ + GH+ +
Sbjct: 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251
+A D S F +G LD++ K+W T T ER VN V PL D +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298
D + K +D + + ++GH ++ F+P
Sbjct: 204 ASDDLTI------------KIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 17/164 (10%)
Query: 25 LFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVS-RDSMTLITGSADQTAKLWNVE 82
+ S + D T +W +N L T+ GH V C + +D T +G D+T K+W++
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 83 TGAQLFTFNFDSPARSVDFA----VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 138
FT R V++ + DK +IT + + + Q
Sbjct: 172 QSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY----------QTKSC 220
Query: 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182
V L+G ++ AV+ P IIS ED ++IW++ T K+ K
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 38/234 (16%)
Query: 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT 69
E P+ K+ + + + D V+ + GE++ + H + V +++
Sbjct: 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114
Query: 70 GSADQTAKLWNVETGAQL-------------FTFNFDSPARSVDFAVGDKLAVITTDPFM 116
GS D T KLWN E L FN P+ FA G
Sbjct: 115 GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST---FASGC----------- 160
Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWD 174
L+ + V + Q + + G + +N + PL +I+A +D ++IWD
Sbjct: 161 -LDRTVKVWSLG-----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
+T + + GH ++ ++GS D + K+W++ T ++ KT
Sbjct: 215 YQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 91/227 (40%), Gaps = 29/227 (12%)
Query: 76 AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
+LWN ET ++ + ++P R+ F ++ +D F RI R
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
GE V+ + I P ++S +D V++W+ E L+++ + GH+ +
Sbjct: 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251
+A D S F +G LD++ K+W T T ER VN V PL D +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMIT 203
Query: 252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298
D + K +D + + ++GH ++ F+P
Sbjct: 204 ASDDLTI------------KIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 17/164 (10%)
Query: 25 LFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVS-RDSMTLITGSADQTAKLWNVE 82
+ S + D T +W +N L T+ GH V C + +D T +G D+T K+W++
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 83 TGAQLFTFNFDSPARSVDFA----VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 138
FT R V++ + DK +IT + + + Q
Sbjct: 172 QSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY----------QTKSC 220
Query: 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182
V L+G ++ AV+ P IIS ED ++IW++ T K+ K
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 38/234 (16%)
Query: 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT 69
E P+ K+ + + + D V+ + GE++ + H + V +++
Sbjct: 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114
Query: 70 GSADQTAKLWNVETGAQL-------------FTFNFDSPARSVDFAVGDKLAVITTDPFM 116
GS D T KLWN E L FN P+ FA G
Sbjct: 115 GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST---FASGC----------- 160
Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWD 174
L+ + V + Q + + G + +N + PL +I+A +D ++IWD
Sbjct: 161 -LDRTVKVWSLG-----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
+T + + GH ++ ++GS D + K+W++ T ++ KT
Sbjct: 215 YQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 130/310 (41%), Gaps = 37/310 (11%)
Query: 6 MKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVW-FADNGERLG----TYRGHNGAVWCCD 59
++GH +T L + +LL S ++D T W + ++ G +++GH+ V C
Sbjct: 13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCT 72
Query: 60 VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118
++ D ++ S D+T +LW+V TG F S SVD + K + I +
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVD--IDKKASXIISG---SR 127
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR------TIISAGEDAIVRI 172
+ I V I G+ + L G +++ P + TIISAG D V+
Sbjct: 128 DKTIKVWTIK-------GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
W+ ++ E+D GH I +L + DG+ + D LW+ + T +
Sbjct: 181 WNLNQFQI--EAD-FIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ 237
Query: 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-I 291
V ++ SP + L +A T T + + ++ L+ E G P
Sbjct: 238 DEVFSLAFSP--NRYWL------AAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHA 289
Query: 292 NALAFNPDGK 301
+LA++ DG+
Sbjct: 290 VSLAWSADGQ 299
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 12/166 (7%)
Query: 17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTA 76
K + D + S D W + + + GHN + S D + + D
Sbjct: 161 KADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEI 220
Query: 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA---- 132
LWN+ +T + S+ F+ ++ +A +K + DP
Sbjct: 221 XLWNLAAKKAXYTLSAQDEVFSLAFS--------PNRYWLAAATATGIKVFSLDPQYLVD 272
Query: 133 DQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG 178
D E K + W +T+ + D ++R+W T
Sbjct: 273 DLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTA 318
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 93/227 (40%), Gaps = 29/227 (12%)
Query: 76 AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
+LWN ET ++ + ++P R+ F ++ +D F RI R
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
GE V+ + I P ++S +D V++W+ E L+++ + GH+ +
Sbjct: 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251
+A D S F +G LD++ K+W T T ER VN V PL D +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM-- 201
Query: 252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298
+T +D K +D + + ++GH ++ F+P
Sbjct: 202 ------ITASD----DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Query: 25 LFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVS-RDSMTLITGSADQTAKLWNVE 82
+ S + D T +W +N L T+ GH V C + +D T +G D+T K+W++
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142
FT R V++ + P+M S +I Q V L
Sbjct: 172 QSTPNFTLT-TGQERGVNYV---DYYPLPDKPYMITASDDLTIKIWDY---QTKSCVATL 224
Query: 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182
+G ++ AV+ P IIS ED ++IW++ T K+ K
Sbjct: 225 EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 38/234 (16%)
Query: 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT 69
E P+ K+ + + + D V+ + GE++ + H + V +++
Sbjct: 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114
Query: 70 GSADQTAKLWNVETGAQL-------------FTFNFDSPARSVDFAVGDKLAVITTDPFM 116
GS D T KLWN E L FN P+ FA G
Sbjct: 115 GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST---FASG------------ 159
Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWD 174
L+ + V + Q + + G + +N + PL +I+A +D ++IWD
Sbjct: 160 CLDRTVKVWSLG-----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
+T + + GH ++ ++GS D + K+W++ T ++ KT
Sbjct: 215 YQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 70/163 (42%), Gaps = 9/163 (5%)
Query: 140 LILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
++ +G Q + + W P + SA DA IW + E GH+ + S+A
Sbjct: 55 VLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAW 113
Query: 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVT 259
A G+ T S DKS +W+ ++ Y +N+ T + HVV Q+ A
Sbjct: 114 APSGNLLATCSRDKSVWVWE---VDEEDEYECVSVLNSHTQD--VKHVVWHPSQELLASA 168
Query: 260 TTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302
+ D + + D + ++GH + +LAF+P G+R
Sbjct: 169 SYDDTVKLYREEEDDWVC---CATLEGHESTVWSLAFDPSGQR 208
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 86/211 (40%), Gaps = 17/211 (8%)
Query: 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY---RGHNGAVWCCDVSRDSMTLITGS 71
+L +N G LL SC D +W + + GH V S L + S
Sbjct: 21 FLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS 80
Query: 72 ADQTAKLW--NVETGAQLFTFN-FDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRI 127
D T +W N + + T ++ +SV +A G+ LA + D ++ V +
Sbjct: 81 FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRD------KSVWVWEV 134
Query: 128 ARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE 187
D D+ E V +L + VW P + SA D V+++ E + + E
Sbjct: 135 --DEEDEY-ECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLE 191
Query: 188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218
GH+ T+ SLA G + S D++ ++W
Sbjct: 192 -GHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 19/182 (10%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---ERLGTYRGHNG----AVWCC 58
++GHE + + + G+LL +C++D + VW D E + H VW
Sbjct: 101 LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVW-- 158
Query: 59 DVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF---DSPARSVDF-AVGDKLAVITTDP 114
L + S D T KL+ E + +S S+ F G +LA + D
Sbjct: 159 --HPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR 216
Query: 115 FMELNSAI---HVKRIARDPADQGGESVLILKGPQGR-INRAVWGPLNRTIISAGEDAIV 170
+ + + + +A +D + + L G R I W L + +A D +
Sbjct: 217 TVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAI 276
Query: 171 RI 172
R+
Sbjct: 277 RV 278
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 29/227 (12%)
Query: 76 AKLWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134
++WN ET ++ + ++P R+ F ++ +D F RI R
Sbjct: 37 VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDF----------RI-RVFNYN 85
Query: 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194
GE V+ + I P ++S +D V++W+ E L+++ + GH+ +
Sbjct: 86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE--GHEHFV 143
Query: 195 TSLA-KAADGSHFLTGSLDKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251
+A D S F +G LD++ K+W T T ER VN V PL D +
Sbjct: 144 MCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYM-- 201
Query: 252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298
+T +D K +D + + ++GH ++ F+P
Sbjct: 202 ------ITASD----DLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP 238
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 17/164 (10%)
Query: 25 LFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVS-RDSMTLITGSADQTAKLWNVE 82
+ S + D T +W +N L T+ GH V C + +D T +G D+T K+W++
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 83 TGAQLFTFNFDSPARSVDFA----VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 138
FT R V++ + DK +IT + + + Q
Sbjct: 172 QSTPNFTLT-TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDY----------QTKSC 220
Query: 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182
V L+G ++ AV+ P IIS ED ++IW++ T K+ K
Sbjct: 221 VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK 264
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 90/234 (38%), Gaps = 38/234 (16%)
Query: 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT 69
E P+ K+ + + + D V+ + GE++ + H + V +++
Sbjct: 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLS 114
Query: 70 GSADQTAKLWNVETGAQL-------------FTFNFDSPARSVDFAVGDKLAVITTDPFM 116
GS D T KLWN E L FN P+ FA G
Sbjct: 115 GSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST---FASGC----------- 160
Query: 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWD 174
L+ + V + Q + + G + +N + PL +I+A +D ++IWD
Sbjct: 161 -LDRTVKVWSLG-----QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
+T + + GH ++ ++GS D + K+W++ T ++ KT
Sbjct: 215 YQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKT 265
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV-SRDS 64
+ GH+ + L + +DG ++ S + D T VW G + + HN +VW V S
Sbjct: 100 LIGHQGNVCSLSF-QDG-VVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSE 155
Query: 65 MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124
+T SAD+T KLW + + F+ + R LAV+ F+ ++ +
Sbjct: 156 NKFLTASADKTIKLWQNDKVIKTFSGIHNDVVR--------HLAVVDDGHFISCSNDGLI 207
Query: 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKL 180
K + D +L+ +G + L N I+S GED VRIW E G L
Sbjct: 208 KLVDXHTGD-------VLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL 258
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221
++A D +++W + K++K H + LA DG HF++ S D KL D
Sbjct: 159 LTASADKTIKLWQND--KVIKTFSGI--HNDVVRHLAVVDDG-HFISCSNDGLIKLVDXH 213
Query: 222 TLELIKTYV-TERPVNAVTMSPLLDHVVLG 250
T ++++TY E V + + P D V G
Sbjct: 214 TGDVLRTYEGHESFVYCIKLLPNGDIVSCG 243
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
P R +S DA ++WD G + TGH+ I ++ +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 215 AKLWDARTLELIKTYVTERPVNAVTMSPLLD--HVVLGGGQDASAVTTTDHRAGKFEAKF 272
+L+D R + + TY + + +T ++L G D F
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-------------FNCNV 296
Query: 273 FDKILQEEIGGVKGHFGPINALAFNPDG 300
+D + + G + GH ++ L DG
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDG 324
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA 72
+T + ++K G LL + D VW A +R G GH+ V C V+ D M + TGS
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 73 DQTAKLWN 80
D K+WN
Sbjct: 333 DSFLKIWN 340
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 85/206 (41%), Gaps = 29/206 (14%)
Query: 47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARS---VDFAV 103
T RGH ++ DS L++ S D +W+ T ++ P RS + A
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMTCAY 105
Query: 104 GDKLAVITTDPFMELNSAIHVK------RIARDPADQGGESVLILKGPQGRINRAVWGPL 157
+ + S ++K R++R+ L G G ++ +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRE-----------LAGHTGYLSCCRFLDD 154
Query: 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217
N+ + S+G D +WD ETG+ TG + SL+ A D F++G+ D SAKL
Sbjct: 155 NQIVTSSG-DTTCALWDIETGQQTTTFTGHTGD---VMSLSLAPDTRLFVSGACDASAKL 210
Query: 218 WDARTLELIKTYV-TERPVNAVTMSP 242
WD R +T+ E +NA+ P
Sbjct: 211 WDVREGMCRQTFTGHESDINAICFFP 236
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 22/219 (10%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH L+ ++ D ++ S + D T +W + G++ T+ GH G V ++ D+
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 66 TLITGSADQTAKLWNVETGA--QLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNS 120
++G+ D +AKLW+V G Q FT + F G+ A + D +L +
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
+ + D G SV K R +++ +D +WD
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKS-------------GRLLLAGYDDFNCNVWDALKA-- 302
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
+ GH ++ L DG TGS D K+W+
Sbjct: 303 -DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 15/154 (9%)
Query: 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 211
+ P + G D I I++ +T + +E S + D + +T S
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 212 DKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 270
D + LWD T + T+ V +++++P + + G DASA D R G
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASA-KLWDVREGMCRQ 220
Query: 271 KFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304
F GH INA+ F P+G +
Sbjct: 221 TF------------TGHESDINAICFFPNGNAFA 242
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
P R +S DA ++WD G + TGH+ I ++ +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 215 AKLWDARTLELIKTYVTERPVNAVTMSPLLD--HVVLGGGQDASAVTTTDHRAGKFEAKF 272
+L+D R + + TY + + +T ++L G D F
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-------------FNCNV 296
Query: 273 FDKILQEEIGGVKGHFGPINALAFNPDG 300
+D + + G + GH ++ L DG
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDG 324
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA 72
+T + ++K G LL + D VW A +R G GH+ V C V+ D M + TGS
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 73 DQTAKLWN 80
D K+WN
Sbjct: 333 DSFLKIWN 340
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 85/206 (41%), Gaps = 29/206 (14%)
Query: 47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARS---VDFAV 103
T RGH ++ DS L++ S D +W+ T ++ P RS + A
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMTCAY 105
Query: 104 GDKLAVITTDPFMELNSAIHVK------RIARDPADQGGESVLILKGPQGRINRAVWGPL 157
+ + S ++K R++R+ L G G ++ +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRE-----------LAGHTGYLSCCRFLDD 154
Query: 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217
N+ + S+G D +WD ETG+ TG + SL+ A D F++G+ D SAKL
Sbjct: 155 NQIVTSSG-DTTCALWDIETGQQTTTFTGHTGD---VMSLSLAPDTRLFVSGACDASAKL 210
Query: 218 WDARTLELIKTYV-TERPVNAVTMSP 242
WD R +T+ E +NA+ P
Sbjct: 211 WDVREGMCRQTFTGHESDINAICFFP 236
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 28/222 (12%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH L+ ++ D ++ S + D T +W + G++ T+ GH G V ++ D+
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 66 TLITGSADQTAKLWNVETGA--QLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNS 120
++G+ D +AKLW+V G Q FT + F G+ A + D +L +
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
+ + D G SV K R +++ +D +WD
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKS-------------GRLLLAGYDDFNCNVWDA----- 299
Query: 181 LKESDKE---TGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
++D+ GH ++ L DG TGS D K+W+
Sbjct: 300 -LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 15/154 (9%)
Query: 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 211
+ P + G D I I++ +T + +E S + D + +T S
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 212 DKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 270
D + LWD T + T+ V +++++P + + G DASA D R G
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASA-KLWDVREGMCRQ 220
Query: 271 KFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304
F GH INA+ F P+G +
Sbjct: 221 TF------------TGHESDINAICFFPNGNAFA 242
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
P R +S DA ++WD G + TGH+ I ++ +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 215 AKLWDARTLELIKTYVTERPVNAVTMSPLLD--HVVLGGGQDASAVTTTDHRAGKFEAKF 272
+L+D R + + TY + + +T ++L G D F
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-------------FNCNV 296
Query: 273 FDKILQEEIGGVKGHFGPINALAFNPDG 300
+D + + G + GH ++ L DG
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDG 324
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA 72
+T + ++K G LL + D VW A +R G GH+ V C V+ D M + TGS
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 73 DQTAKLWN 80
D K+WN
Sbjct: 333 DSFLKIWN 340
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 85/206 (41%), Gaps = 29/206 (14%)
Query: 47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARS---VDFAV 103
T RGH ++ DS L++ S D +W+ T ++ P RS + A
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMTCAY 105
Query: 104 GDKLAVITTDPFMELNSAIHVK------RIARDPADQGGESVLILKGPQGRINRAVWGPL 157
+ + S ++K R++R+ L G G ++ +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRE-----------LAGHTGYLSCCRFLDD 154
Query: 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217
N+ + S+G D +WD ETG+ TG + SL+ A D F++G+ D SAKL
Sbjct: 155 NQIVTSSG-DTTCALWDIETGQQTTTFTGHTGD---VMSLSLAPDTRLFVSGACDASAKL 210
Query: 218 WDARTLELIKTYV-TERPVNAVTMSP 242
WD R +T+ E +NA+ P
Sbjct: 211 WDVREGMCRQTFTGHESDINAICFFP 236
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 28/222 (12%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH L+ ++ D ++ S + D T +W + G++ T+ GH G V ++ D+
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 66 TLITGSADQTAKLWNVETGA--QLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNS 120
++G+ D +AKLW+V G Q FT + F G+ A + D +L +
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
+ + D G SV K R +++ +D +WD
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKS-------------GRLLLAGYDDFNCNVWDA----- 299
Query: 181 LKESDKE---TGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
++D+ GH ++ L DG TGS D K+W+
Sbjct: 300 -LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 15/154 (9%)
Query: 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 211
+ P + G D I I++ +T + +E S + D + +T S
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 212 DKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 270
D + LWD T + T+ V +++++P + + G DASA D R G
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASA-KLWDVREGMCRQ 220
Query: 271 KFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304
F GH INA+ F P+G +
Sbjct: 221 TF------------TGHESDINAICFFPNGNAFA 242
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
P R +S DA ++WD G + TGH+ I ++ +G+ F TGS D +
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 249
Query: 215 AKLWDARTLELIKTYVTERPVNAVTMSPLLD--HVVLGGGQDASAVTTTDHRAGKFEAKF 272
+L+D R + + TY + + +T ++L G D F
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-------------FNCNV 296
Query: 273 FDKILQEEIGGVKGHFGPINALAFNPDG 300
+D + + G + GH ++ L DG
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDG 324
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA 72
+T + ++K G LL + D VW A +R G GH+ V C V+ D M + TGS
Sbjct: 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 332
Query: 73 DQTAKLWN 80
D K+WN
Sbjct: 333 DSFLKIWN 340
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 85/206 (41%), Gaps = 29/206 (14%)
Query: 47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARS---VDFAV 103
T RGH ++ DS L++ S D +W+ T ++ P RS + A
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMTCAY 105
Query: 104 GDKLAVITTDPFMELNSAIHVK------RIARDPADQGGESVLILKGPQGRINRAVWGPL 157
+ + S ++K R++R+ L G G ++ +
Sbjct: 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRE-----------LAGHTGYLSCCRFLDD 154
Query: 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217
N+ + S+G D +WD ETG+ TG + SL+ A D F++G+ D SAKL
Sbjct: 155 NQIVTSSG-DTTCALWDIETGQQTTTFTGHTGD---VMSLSLAPDTRLFVSGACDASAKL 210
Query: 218 WDARTLELIKTYV-TERPVNAVTMSP 242
WD R +T+ E +NA+ P
Sbjct: 211 WDVREGMCRQTFTGHESDINAICFFP 236
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 22/219 (10%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH L+ ++ D ++ S + D T +W + G++ T+ GH G V ++ D+
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 197
Query: 66 TLITGSADQTAKLWNVETGA--QLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNS 120
++G+ D +AKLW+V G Q FT + F G+ A + D +L +
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
+ + D G SV K R +++ +D +WD
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKS-------------GRLLLAGYDDFNCNVWDALKA-- 302
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
+ GH ++ L DG TGS D K+W+
Sbjct: 303 -DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 15/154 (9%)
Query: 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 211
+ P + G D I I++ +T + +E S + D + +T S
Sbjct: 103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 162
Query: 212 DKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 270
D + LWD T + T+ V +++++P + + G DASA D R G
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASA-KLWDVREGMCRQ 220
Query: 271 KFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304
F GH INA+ F P+G +
Sbjct: 221 TF------------TGHESDINAICFFPNGNAFA 242
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
P R +S DA ++WD G + TGH+ I ++ +G+ F TGS D +
Sbjct: 204 APDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDAT 260
Query: 215 AKLWDARTLELIKTYVTERPVNAVTMSPLLD--HVVLGGGQDASAVTTTDHRAGKFEAKF 272
+L+D R + + TY + + +T ++L G D F
Sbjct: 261 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDD-------------FNCNV 307
Query: 273 FDKILQEEIGGVKGHFGPINALAFNPDG 300
+D + + G + GH ++ L DG
Sbjct: 308 WDALKADRAGVLAGHDNRVSCLGVTDDG 335
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA 72
+T + ++K G LL + D VW A +R G GH+ V C V+ D M + TGS
Sbjct: 284 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSW 343
Query: 73 DQTAKLWN 80
D K+WN
Sbjct: 344 DSFLKIWN 351
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 85/206 (41%), Gaps = 29/206 (14%)
Query: 47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARS---VDFAV 103
T RGH ++ DS L++ S D +W+ T ++ P RS + A
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI----PLRSSWVMTCAY 116
Query: 104 GDKLAVITTDPFMELNSAIHVK------RIARDPADQGGESVLILKGPQGRINRAVWGPL 157
+ + S ++K R++R+ L G G ++ +
Sbjct: 117 APSGNYVACGGLDNICSIYNLKTREGNVRVSRE-----------LAGHTGYLSCCRFLDD 165
Query: 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217
N+ + S+G D +WD ETG+ TG + SL+ A D F++G+ D SAKL
Sbjct: 166 NQIVTSSG-DTTCALWDIETGQQTTTFTGHTGD---VMSLSLAPDTRLFVSGACDASAKL 221
Query: 218 WDARTLELIKTYV-TERPVNAVTMSP 242
WD R +T+ E +NA+ P
Sbjct: 222 WDVREGMCRQTFTGHESDINAICFFP 247
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 22/219 (10%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH L+ ++ D ++ S + D T +W + G++ T+ GH G V ++ D+
Sbjct: 150 LAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTR 208
Query: 66 TLITGSADQTAKLWNVETGA--QLFTFNFDSPARSVDFAVGDKLAVITTDP---FMELNS 120
++G+ D +AKLW+V G Q FT + F G+ A + D +L +
Sbjct: 209 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 268
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
+ + D G SV K R +++ +D +WD
Sbjct: 269 DQELMTYSHDNIICGITSVSFSKS-------------GRLLLAGYDDFNCNVWDALKA-- 313
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219
+ GH ++ L DG TGS D K+W+
Sbjct: 314 -DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 59/154 (38%), Gaps = 15/154 (9%)
Query: 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 211
+ P + G D I I++ +T + +E S + D + +T S
Sbjct: 114 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG 173
Query: 212 DKSAKLWDARTLELIKTYVTER-PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 270
D + LWD T + T+ V +++++P + + G DASA D R G
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASA-KLWDVREGMCRQ 231
Query: 271 KFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304
F GH INA+ F P+G +
Sbjct: 232 TF------------TGHESDINAICFFPNGNAFA 253
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 22/178 (12%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAV----WC 57
+ GH + + L++ DG L S D+ VW + GE L T+ H GAV WC
Sbjct: 226 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 285
Query: 58 CDVSRDSMTLITG--SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF 115
S L TG ++D+ ++WNV +GA L + S S+ ++ K +I+ F
Sbjct: 286 ---PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGF 341
Query: 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
+ N + I + P V LKG R+ P T+ SA D +R+W
Sbjct: 342 AQ-NQLV----IWKYPT---MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/282 (17%), Positives = 106/282 (37%), Gaps = 29/282 (10%)
Query: 25 LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RDSMTLITGSADQTAKLWNVE 82
+ + A D++ +W A +G+ L + + V+ ++ L G++ +LW+V+
Sbjct: 118 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 177
Query: 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142
+L S ++ ++ + ++ L+S I V L
Sbjct: 178 QQKRLRNMTSHSA----------RVGSLSWNSYI-LSSGSRSGHIHHHDVRVAEHHVATL 226
Query: 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAA 201
G + W P R + S G D +V +W + G+ T H+ + ++A
Sbjct: 227 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 286
Query: 202 DGSHFLT---GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAV 258
S+ L G+ D+ ++W+ + + V ++ SP ++ G
Sbjct: 287 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG-------- 338
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
H + + + ++ +KGH + +L +PDG
Sbjct: 339 ----HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG 376
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 45/157 (28%)
Query: 131 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAG---EDAIVRIWDTETGKLLKESDKE 187
P + G + QG + W P +++ G D +RIW+ +G L D
Sbjct: 261 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 320
Query: 188 T----------------------------------------GHKKTITSLAKAADGSHFL 207
+ GH + SL + DG+
Sbjct: 321 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 380
Query: 208 TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL 244
+ + D++ +LW R EL ER + S L+
Sbjct: 381 SAAADETLRLW--RCFELDPARRREREKASAAKSSLI 415
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 22/178 (12%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAV----WC 57
+ GH + + L++ DG L S D+ VW + GE L T+ H GAV WC
Sbjct: 237 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 296
Query: 58 CDVSRDSMTLITG--SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF 115
S L TG ++D+ ++WNV +GA L + S S+ ++ K +I+ F
Sbjct: 297 ---PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGF 352
Query: 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
+ N + I + P V LKG R+ P T+ SA D +R+W
Sbjct: 353 AQ-NQLV----IWKYPT---MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/282 (17%), Positives = 106/282 (37%), Gaps = 29/282 (10%)
Query: 25 LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RDSMTLITGSADQTAKLWNVE 82
+ + A D++ +W A +G+ L + + V+ ++ L G++ +LW+V+
Sbjct: 129 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 188
Query: 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142
+L S ++ ++ + ++ L+S I V L
Sbjct: 189 QQKRLRNMTSHSA----------RVGSLSWNSYI-LSSGSRSGHIHHHDVRVAEHHVATL 237
Query: 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAA 201
G + W P R + S G D +V +W + G+ T H+ + ++A
Sbjct: 238 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 297
Query: 202 DGSHFLT---GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAV 258
S+ L G+ D+ ++W+ + + V ++ SP ++ G
Sbjct: 298 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG-------- 349
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
H + + + ++ +KGH + +L +PDG
Sbjct: 350 ----HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG 387
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 22/178 (12%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAV----WC 57
+ GH + + L++ DG L S D+ VW + GE L T+ H GAV WC
Sbjct: 146 LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWC 205
Query: 58 CDVSRDSMTLITG--SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF 115
S L TG ++D+ ++WNV +GA L + S S+ ++ K +I+ F
Sbjct: 206 ---PWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK-ELISGHGF 261
Query: 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173
+ N + I + P V LKG R+ P T+ SA D +R+W
Sbjct: 262 AQ-NQLV----IWKYPT---MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/282 (17%), Positives = 106/282 (37%), Gaps = 29/282 (10%)
Query: 25 LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RDSMTLITGSADQTAKLWNVE 82
+ + A D++ +W A +G+ L + + V+ ++ L G++ +LW+V+
Sbjct: 38 VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQ 97
Query: 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142
+L S ++ ++ + ++ L+S I V L
Sbjct: 98 QQKRLRNMTSHSA----------RVGSLSWNSYI-LSSGSRSGHIHHHDVRVAEHHVATL 146
Query: 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAA 201
G + W P R + S G D +V +W + G+ T H+ + ++A
Sbjct: 147 SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCP 206
Query: 202 DGSHFLT---GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAV 258
S+ L G+ D+ ++W+ + + V ++ SP ++ G
Sbjct: 207 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISG-------- 258
Query: 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300
H + + + ++ +KGH + +L +PDG
Sbjct: 259 ----HGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDG 296
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/138 (18%), Positives = 44/138 (31%), Gaps = 45/138 (32%)
Query: 131 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAG---EDAIVRIWDTETGKLLKESDKE 187
P + G + QG + W P +++ G D +RIW+ +G L D
Sbjct: 181 PGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Query: 188 T----------------------------------------GHKKTITSLAKAADGSHFL 207
+ GH + SL + DG+
Sbjct: 241 SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVA 300
Query: 208 TGSLDKSAKLWDARTLEL 225
+ + D++ +LW R EL
Sbjct: 301 SAAADETLRLW--RCFEL 316
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 137 ESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 195
E V+ L+G R+ W P + ++ SAG D ++ +WD TG + + H TI
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDV-HPDTIY 180
Query: 196 SLAKAADGSHFLTGSLDKSAKLWDARTLELI----KTYVTERPVNAVTMS 241
S+ + DG+ T DK ++ + R ++ + + RPV+AV +S
Sbjct: 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 21/123 (17%)
Query: 121 AIHVKRIARDPADQGGESVLILK-GPQGRINRAV--------------WGPLNRTIISAG 165
A++ K +A GG + L+L G GR+++ V W P N +I++G
Sbjct: 41 AVNPKFMALIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASG 100
Query: 166 -EDAIVRIWDTETGKLLKESDKET----GHKKTITSLAKAADGSH-FLTGSLDKSAKLWD 219
ED V +W+ G L+ + GH K + +A + L+ D +WD
Sbjct: 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWD 160
Query: 220 ART 222
T
Sbjct: 161 VGT 163
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVW 56
L+ GH P+ + + D ++ S ++D T VW +G E + T GH V
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 57 CCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFD 93
+ L++ D +W+V TGA + T D
Sbjct: 136 IVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPD 173
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 137 ESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTIT 195
E V+ L+G R+ W P + ++ SAG D ++ +WD TG + + H TI
Sbjct: 122 EPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV-HPDTIY 180
Query: 196 SLAKAADGSHFLTGSLDKSAKLWDARTLELI----KTYVTERPVNAVTMS 241
S+ + DG+ T DK ++ + R ++ + + RPV+AV +S
Sbjct: 181 SVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS 230
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 21/124 (16%)
Query: 120 SAIHVKRIARDPADQGGESVLILK-GPQGRINRAV--------------WGPLNRTIISA 164
A++ K +A GG + L+L G GR+++ V W P N +I++
Sbjct: 40 CAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIAS 99
Query: 165 G-EDAIVRIWDTETGKLLKESDKET----GHKKTITSLAKAADGSH-FLTGSLDKSAKLW 218
G ED V +W+ G L+ + GH K + +A + L+ D +W
Sbjct: 100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW 159
Query: 219 DART 222
D T
Sbjct: 160 DVGT 163
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 9/98 (9%)
Query: 5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVW 56
L+ GH P+ + + D ++ S ++D T VW +G E + T GH V
Sbjct: 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG 135
Query: 57 CCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFD 93
+ L++ D +W+V TGA + T D
Sbjct: 136 IVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPD 173
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-------GHNGAVWCCDVS 61
H + + ++YN DG L S D T ++ +G + G + H+G+V+ S
Sbjct: 189 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248
Query: 62 RDSMTLITGSADQTAKLWNVET 83
D + + SAD+T K+WNV T
Sbjct: 249 PDGTKIASASADKTIKIWNVAT 270
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 73/184 (39%), Gaps = 35/184 (19%)
Query: 137 ESVLILKGPQGR-----------INRAVWGPLNRTIISAGEDAIVRIWD----TETGKLL 181
+V I +GP + ++ + P S G D + +++ T+TG
Sbjct: 170 NTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFE 229
Query: 182 KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS 241
+S K H ++ L + DG+ + S DK+ K+W+ TL++ KT + +
Sbjct: 230 DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKT---------IPVG 280
Query: 242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK----GHFGPINALAFN 297
++ LG + T A F + E+G + GH I AL+ +
Sbjct: 281 TRIEDQQLG-------IIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSS 333
Query: 298 PDGK 301
DGK
Sbjct: 334 ADGK 337
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 59/172 (34%)
Query: 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG---TYRGHNGAVWCCDVSRDSM 65
H +T + ++ +G L + + + N L ++ H V C S D++
Sbjct: 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNV 549
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125
L TGS D + +WN+
Sbjct: 550 RLATGSLDNSVIVWNM-------------------------------------------- 565
Query: 126 RIARDPADQGGESVLILKGPQG--RINRAVWGPLNR-TIISAGEDAIVRIWD 174
P+D +I+KG +N +W LN TI+SAG+D+ ++ W+
Sbjct: 566 ---NKPSDHP----IIIKGAHAMSSVNSVIW--LNETTIVSAGQDSNIKFWN 608
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218
+ ++S + + + E G + GH K IT+L+ +ADG + + W
Sbjct: 295 QALVSISANGFINFVNPELGSI---DQVRYGHNKAITALSSSADGKTLFSADAEGHINSW 351
Query: 219 DART 222
D T
Sbjct: 352 DIST 355
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 73/180 (40%), Gaps = 30/180 (16%)
Query: 63 DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFA-VGDK---LAVITTDPFMEL 118
D+ + S D+T K+W+ T FNF+ S + V K +AV T P ++L
Sbjct: 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQL 170
Query: 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTE- 176
+ G IL+G + I W P I+ +A D+ V++WD
Sbjct: 171 CDL------------KSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRR 218
Query: 177 -TGKLL-------KESDK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224
+G L+ K+S T H + L +DG H LT D +LW++ E
Sbjct: 219 ASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 43/204 (21%)
Query: 116 MELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT 175
+ELN V+RI GG + L ++ +GR ++S G D ++ ++D
Sbjct: 30 LELNKDRDVERI-----HGGGINTLDIEPVEGRY-----------MLSGGSDGVIVLYDL 73
Query: 176 E--------TGKLLKE--SDKETGHKKTITSLA-KAADGSHFLTGSLDKSAKLWDARTLE 224
E T K + D H+ ++ ++ D F + S DK+ K+WD TL+
Sbjct: 74 ENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ 133
Query: 225 LIKTYVTERPVNAVTMSPL-LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 283
+ E V + MSP+ H ++ G V D ++G ILQ
Sbjct: 134 TADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS-----HILQ----- 183
Query: 284 VKGHFGPINALAFNPDGKRYGFLL 307
GH I A++++P RY ++L
Sbjct: 184 --GHRQEILAVSWSP---RYDYIL 202
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 48/128 (37%), Gaps = 13/128 (10%)
Query: 50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF----DSPARSVDFAVGD 105
HNG V + D + L+T D +LWN G N+ ++ + + F V
Sbjct: 243 AHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLV-NYGKVCNNSKKGLKFTV-- 299
Query: 106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165
+ F+ S I V + GE + +LKG ++ V+ + + S
Sbjct: 300 SCGCSSEFVFVPYGSTIAVYTV------YSGEQITMLKGHYKTVDCCVFQSNFQELYSGS 353
Query: 166 EDAIVRIW 173
D + W
Sbjct: 354 RDCNILAW 361
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 16/135 (11%)
Query: 136 GESVLILKGPQGRINRAVWGPLNRT--------------IISAGEDAIVRIWDT-ETGKL 180
G S+ + K P+G N ++ +T I+ A + V +W+ E L
Sbjct: 69 GGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESL 128
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVT 239
L + H + +L+ +DG+ ++G D S K+WD ++K+Y VN V
Sbjct: 129 LVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVA 188
Query: 240 MSPLLDHVVLGGGQD 254
P D + L G+D
Sbjct: 189 ACPGKDTIFLSCGED 203
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 106/247 (42%), Gaps = 22/247 (8%)
Query: 6 MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVW-FADNGERLGTYR----GHNGAVWCCD 59
M+ H +T + D D++ S ++D + +W + + G + GH+ V
Sbjct: 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVV 437
Query: 60 VSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITT-DPFME 117
+S D ++GS D +LW++ G F SV F++ ++ V + D ++
Sbjct: 438 LSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK 497
Query: 118 LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP--LNRTIISAGEDAIVRIWDT 175
L + + + +GGE G + ++ + P L TI+SA D V++W+
Sbjct: 498 LWNTLGECKYT---ISEGGE------GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548
Query: 176 ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPV 235
KL GH ++++A + DGS +G D LWD + + + +
Sbjct: 549 SNCKL---RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVI 605
Query: 236 NAVTMSP 242
+A+ SP
Sbjct: 606 HALCFSP 612
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 17/161 (10%)
Query: 25 LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84
+ S + D T VW N + T GH G V VS D +G D LW++ G
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593
Query: 85 AQLFTFNFDSPARSVDFAVGDKLAVITTD---PFMELNSAIHVKRIARD---PADQGGES 138
+L++ +S ++ F+ T+ +L S V+ + D A++ S
Sbjct: 594 KKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNS 653
Query: 139 VLILKGPQGRINRAV------WGPLNRTIISAGEDAIVRIW 173
GP + + W T+ S D ++R+W
Sbjct: 654 -----GPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 86/225 (38%), Gaps = 16/225 (7%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
+ GH + + + DG S + D +W G + GH V S D+
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM---ELNSAI 122
+++ S D+T KLWN G +T + D+ + + T P + + +
Sbjct: 486 QIVSASRDRTIKLWNT-LGECKYTISEGGEGHR-DWVSCVRFSPNTLQPTIVSASWDKTV 543
Query: 123 HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182
V ++ L G G ++ P S G+D +V +WD GK L
Sbjct: 544 KVWNLSNCKLRS------TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY 597
Query: 183 ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227
+ + I +L + + ++L + + K+WD + +++
Sbjct: 598 SLEANS----VIHALCFSPN-RYWLCAATEHGIKIWDLESKSIVE 637
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
+ H +T LK+ G+ L S ++D +W +G T GH V +
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 67 LITGSADQTAKLWNVETGAQLFTFN 91
+++ S D T +LW TG + TFN
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFN 220
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET--GHKKTITSLAKAADGSH 205
I + + P +IS+ +D ++IW + G S+ T GH+ T+T +A G +
Sbjct: 141 EITKLKFFPSGEALISSSQDMQLKIWSVKDG-----SNPRTLIGHRATVTDIAIIDRGRN 195
Query: 206 FLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTMSPLL 244
L+ SLD + +LW+ T I T+ E P + V L
Sbjct: 196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALF 235
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 38/85 (44%)
Query: 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMT 66
+ H +T LK+ G+ L S ++D +W +G T GH V +
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 67 LITGSADQTAKLWNVETGAQLFTFN 91
+++ S D T +LW TG + TFN
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTFN 217
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET--GHKKTITSLAKAADGSH 205
I + + P +IS+ +D ++IW + G S+ T GH+ T+T +A G +
Sbjct: 138 EITKLKFFPSGEALISSSQDMQLKIWSVKDG-----SNPRTLIGHRATVTDIAIIDRGRN 192
Query: 206 FLTGSLDKSAKLWDARTLELIKTY 229
L+ SLD + +LW+ T I T+
Sbjct: 193 VLSASLDGTIRLWECGTGTTIHTF 216
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL 67
GH P++ L++N LL S + D T +W NG + GH+ ++ D +
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KV 303
Query: 68 ITGSADQTAKLWNVETGAQL 87
I+ S D + +LW+++ L
Sbjct: 304 ISCSMDGSVRLWSLKQNTLL 323
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 86/227 (37%), Gaps = 57/227 (25%)
Query: 55 VWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD-SPARSVDFAVGDKLAVITTD 113
V C S D +++TG + +LWN +TGA L NF +P SV + D +I+ D
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWN-KDGTHIISMD 168
Query: 114 ----------------PFMELNSAIHVKRIARDPADQGGESV---------LILKGPQGR 148
EL A + + G V ++ GP+G
Sbjct: 169 VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGA 228
Query: 149 INRAVW---------------GPL--------NRTIISAGEDAIVRIWDTETGKLLKESD 185
I V+ GP+ N+ ++SA +D +RIW G +
Sbjct: 229 I--FVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNG---NSQN 283
Query: 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
GH ++I S + D ++ S+D S +LW + L+ + +
Sbjct: 284 CFYGHSQSIVSASWVGD-DKVISCSMDGSVRLWSLKQNTLLALSIVD 329
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 21/157 (13%)
Query: 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213
W +I++ E+ +R+W+ +TG LL + H+ I S+ DG+H ++ ++
Sbjct: 116 WSHDGNSIVTGVENGELRLWN-KTGALLNVLNF---HRAPIVSVKWNKDGTHIISMDVEN 171
Query: 214 SAKLWDARTLELIKTYVTER----PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA---- 265
LW+ + +++ + + +NA S G G V D
Sbjct: 172 VTILWNVISGTVMQHFELKETGGSSINAENHS--------GDGSLGVDVEWVDDDKFVIP 223
Query: 266 GKFEAKFFDKILQEE-IGGVKGHFGPINALAFNPDGK 301
G A F +I ++ G + GH GPI+ L FN K
Sbjct: 224 GPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK 260
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 111/282 (39%), Gaps = 37/282 (13%)
Query: 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY--RGHNGAVWCCDVSRDSMTLIT 69
P++ +NKD + C +H ++ + + + + HNG V D + DS ++T
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 70 GSADQTAKLWNVE---TGAQLFTFNFDSPARSV-------DFAVGDKLAVITTDPFMELN 119
D+ A +W ++ L + AR V FAVG VI+ F + N
Sbjct: 70 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 129
Query: 120 S---AIHVKRIARDPA---DQGGESVLILKGP---QGRINRAVWGPLNRTIISAGEDAIV 170
H+K+ R D SVL+ G + RI A I E
Sbjct: 130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY-------IKEVEERPAP 182
Query: 171 RIWDTET--GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
W ++ G+L+ ES G + + +A+GS S D + L DA + T
Sbjct: 183 TPWGSKMPFGELMFESSSSCGW---VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 239
Query: 229 YVTER-PVNAVTMSPLLDHVVLGGGQDASAVT-TTDHRAGKF 268
+E P+ AVT + + ++ G D V T D AGK
Sbjct: 240 LASETLPLLAVTF--ITESSLVAAGHDCFPVLFTYDSAAGKL 279
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 22/243 (9%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSR 62
M GH+ + L +N+ +L S ++ H V A++ ++GT +GH+ V
Sbjct: 172 MAGHQARVGCLSWNRH--VLSSGSRSGAIHHHDVRIANH--QIGTLQGHSSEVCGLAWRS 227
Query: 63 DSMTLITGSADQTAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSA 121
D + L +G D ++W+ + FT N ++ ++V + + T M+
Sbjct: 228 DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMD---- 283
Query: 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG--EDAIVRIWDTETGK 179
K+I A G + G Q + +W P ++ I+S D + IW +
Sbjct: 284 ---KQIHFWNAATGARVNTVDAGSQ--VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG 338
Query: 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--TYVTERPVNA 237
L K+ D H + A + DG T + D++ K W + +K +T+ P ++
Sbjct: 339 LTKQVDIP-AHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPITKTPSSS 397
Query: 238 VTM 240
+T+
Sbjct: 398 ITI 400
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 19/119 (15%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDA------IVRIWDTETGKLLKESDKETGHKKTIT 195
+ G Q R+ W NR ++S+G + VRI + + G L GH +
Sbjct: 172 MAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTL-------QGHSSEVC 221
Query: 196 SLAKAADGSHFLTGSLDKSAKLWDARTL--ELIKTYVTERPVNAVTMSPLLDHVVLGGG 252
LA +DG +G D ++WDAR+ + KT V AV P +++ GG
Sbjct: 222 GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN-HNAAVKAVAWCPWQSNLLATGG 279
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 43/106 (40%), Gaps = 10/106 (9%)
Query: 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG--KLLKESDKETGHKKTITSLAK 199
L+G + W + S G D +V+IWD + K K T H + ++A
Sbjct: 213 LQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTK-----TNHNAAVKAVAW 267
Query: 200 AADGSHFLT---GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242
S+ L G++DK W+A T + T V ++ SP
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSP 313
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 62/149 (41%), Gaps = 22/149 (14%)
Query: 154 WGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFLTGSL 211
W LN +++ + V +W+ ++G + L E+D+ T + S+ + DGS G
Sbjct: 101 WSNLN--VVAVALERNVYVWNADSGSVSALAETDEST----YVASVKWSHDGSFLSVGLG 154
Query: 212 DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK 271
+ ++D + ++T + A + VL G + A+ D R
Sbjct: 155 NGLVDIYDVESQTKLRTMAGHQ---ARVGCLSWNRHVLSSGSRSGAIHHHDVR------- 204
Query: 272 FFDKILQEEIGGVKGHFGPINALAFNPDG 300
I +IG ++GH + LA+ DG
Sbjct: 205 ----IANHQIGTLQGHSSEVCGLAWRSDG 229
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 103/233 (44%), Gaps = 23/233 (9%)
Query: 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM 65
++GH+ + + + + S + D +W +NG+++ + W S DS
Sbjct: 76 LEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQ 135
Query: 66 TLITGSADQTAKLWNVETGAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFMELNS 120
L TG+ ++ VE+G + ++ + S A S D G LA D
Sbjct: 136 YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPD---GKYLASGAIDGI----- 187
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180
I++ IA G+ + L+G I + P ++ +++A +D ++I+D + L
Sbjct: 188 -INIFDIAT------GKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
Query: 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233
+ +GH + ++A D +HF++ S DKS K+WD T + T+ +
Sbjct: 241 ---AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ 290
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 40/178 (22%)
Query: 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL----TGSLDK 213
+ T+++ D +V++W +L + E GH+ + S+ D SH L + SLD
Sbjct: 48 SETVVTGSLDDLVKVWKWRDERLDLQWSLE-GHQLGVVSV----DISHTLPIAASSSLDA 102
Query: 214 SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE---- 269
+LWD + IK+ + PV+A T++ D L G V +GK E
Sbjct: 103 HIRLWDLENGKQIKS-IDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161
Query: 270 --AKF------------------------FDKILQEEIGGVKGHFGPINALAFNPDGK 301
KF FD + + ++GH PI +L F+PD +
Sbjct: 162 TRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQ 219
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 111/282 (39%), Gaps = 37/282 (13%)
Query: 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY--RGHNGAVWCCDVSRDSMTLIT 69
P++ +NKD + C +H ++ + + + + HNG V D + DS ++T
Sbjct: 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVT 69
Query: 70 GSADQTAKLWNVE---TGAQLFTFNFDSPARSV-------DFAVGDKLAVITTDPFMELN 119
D+ A +W ++ L + AR V FAVG VI+ F + N
Sbjct: 70 CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 129
Query: 120 S---AIHVKRIARDPA---DQGGESVLILKGP---QGRINRAVWGPLNRTIISAGEDAIV 170
H+K+ R D SVL+ G + RI A I E
Sbjct: 130 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY-------IKEVEERPAP 182
Query: 171 RIWDTET--GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
W ++ G+L+ ES G + + +A+GS S D + L DA + T
Sbjct: 183 TPWGSKMPFGELMFESSSSCGW---VHGVCFSANGSRVAWVSHDSTVCLADADKKMAVAT 239
Query: 229 YVTER-PVNAVTMSPLLDHVVLGGGQDASAVT-TTDHRAGKF 268
+E P+ AVT + + ++ G D V T D AGK
Sbjct: 240 LASETLPLLAVTF--ITESSLVAAGHDCFPVLFTYDSAAGKL 279
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 141 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
I G + W L+ ++ S +D + IWDT + K S H + L+
Sbjct: 224 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSF 283
Query: 200 AADGSHFL-TGSLDKSAKLWDARTLEL-IKTYVTER-PVNAVTMSPLLDHVVLGGGQD 254
L TGS DK+ LWD R L+L + T+ + + + V SP + ++ G D
Sbjct: 284 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 50 GHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVET-GAQLFTF-NFDSPARSVDFAVGDK 106
H V C + S L TGSAD+T LW++ +L TF + V ++ ++
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 107 LAVITTDPFMELN----SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162
+ ++ LN S I ++ A D D E + I G +I+ W P +I
Sbjct: 333 TILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 392
Query: 163 -SAGEDAIVRIW 173
S ED I++IW
Sbjct: 393 CSVSEDNIMQIW 404
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 24/199 (12%)
Query: 6 MKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLG-------TYRGHNGAVWC 57
++GH++ L +N + L S + DHT +W + G + G + GH+ V
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVV-- 232
Query: 58 CDVSRDSM-TLITGSA--DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP 114
DV+ + + GS DQ +W+ + P+ VD A ++ ++ +P
Sbjct: 233 EDVAWHLLHESLFGSVADDQKLMIWDTRSNTT------SKPSHLVD-AHTAEVNCLSFNP 285
Query: 115 FME--LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVR 171
+ E L + K +A + + + I + W P N TI+ S+G D +
Sbjct: 286 YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLN 345
Query: 172 IWD-TETGKLLKESDKETG 189
+WD ++ G+ D E G
Sbjct: 346 VWDLSKIGEEQSAEDAEDG 364
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 141 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
I G + W L+ ++ S +D + IWDT + K S H + L+
Sbjct: 224 IFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSF 283
Query: 200 AADGSHFL-TGSLDKSAKLWDARTLEL-IKTYVTER-PVNAVTMSPLLDHVVLGGGQD 254
L TGS DK+ LWD R L+L + T+ + + + V SP + ++ G D
Sbjct: 284 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTD 341
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 50 GHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVET-GAQLFTF-NFDSPARSVDFAVGDK 106
H V C + S L TGSAD+T LW++ +L TF + V ++ ++
Sbjct: 273 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNE 332
Query: 107 LAVITTDPFMELN----SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162
+ ++ LN S I ++ A D D E + I G +I+ W P +I
Sbjct: 333 TILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVI 392
Query: 163 -SAGEDAIVRIW 173
S ED I +IW
Sbjct: 393 CSVSEDNIXQIW 404
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 85/201 (42%), Gaps = 24/201 (11%)
Query: 4 ILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLG-------TYRGHNGAV 55
+ ++GH++ L +N + L S + DHT +W + G + G + GH+ V
Sbjct: 173 LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVV 232
Query: 56 WCCDVSRDSM-TLITGSA--DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITT 112
DV+ + + GS DQ +W+ + P+ VD A ++ ++
Sbjct: 233 --EDVAWHLLHESLFGSVADDQKLXIWDTRSNTT------SKPSHLVD-AHTAEVNCLSF 283
Query: 113 DPFME--LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAI 169
+P+ E L + K +A + + + I + W P N TI+ S+G D
Sbjct: 284 NPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRR 343
Query: 170 VRIWD-TETGKLLKESDKETG 189
+ +WD ++ G+ D E G
Sbjct: 344 LNVWDLSKIGEEQSAEDAEDG 364
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Query: 141 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
I G + W L+ ++ S +D + IWDT K S H + L+
Sbjct: 228 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 287
Query: 200 AADGSHFL-TGSLDKSAKLWDARTLEL-IKTYVTER-PVNAVTMSPLLDHVVLGGGQD 254
L TGS DK+ LWD R L+L + ++ + + + V SP + ++ G D
Sbjct: 288 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 345
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 66/163 (40%), Gaps = 15/163 (9%)
Query: 24 LLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLW 79
L S A D +W N + T H V C + S L TGSAD+T LW
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
Query: 80 NVETGAQLFTFNFDSPARSVDFAVG------DKLAVITTDPFMEL--NSAIHVKRIARDP 131
++ +L +F+S + F V LA TD + + S I ++ D
Sbjct: 308 DLR-NLKLKLHSFESHKDEI-FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 365
Query: 132 ADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIW 173
D E + I G +I+ W P II S ED I+++W
Sbjct: 366 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 67/174 (38%), Gaps = 25/174 (14%)
Query: 141 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
I G + W L+ ++ S +D + IWDT K S H + L+
Sbjct: 226 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 285
Query: 200 AADGSHFL-TGSLDKSAKLWDARTLEL-IKTYVTER-PVNAVTMSPLLDHVVLGGGQD-- 254
L TGS DK+ LWD R L+L + ++ + + + V SP + ++ G D
Sbjct: 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR 345
Query: 255 ---------ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
+T D G E F I G GH I+ ++NP+
Sbjct: 346 LHVWDLSKIGEEQSTEDAEDGPPELLF--------IHG--GHTAKISDFSWNPN 389
Score = 34.7 bits (78), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 66/163 (40%), Gaps = 15/163 (9%)
Query: 24 LLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLW 79
L S A D +W N + T H V C + S L TGSAD+T LW
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
Query: 80 NVETGAQLFTFNFDSPARSVDFAVG------DKLAVITTDPFMEL--NSAIHVKRIARDP 131
++ +L +F+S + F V LA TD + + S I ++ D
Sbjct: 306 DLR-NLKLKLHSFESHKDEI-FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363
Query: 132 ADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIW 173
D E + I G +I+ W P II S ED I+++W
Sbjct: 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 4/118 (3%)
Query: 141 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
I G + W L+ ++ S +D + IWDT K S H + L+
Sbjct: 230 IFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF 289
Query: 200 AADGSHFL-TGSLDKSAKLWDARTLEL-IKTYVTER-PVNAVTMSPLLDHVVLGGGQD 254
L TGS DK+ LWD R L+L + ++ + + + V SP + ++ G D
Sbjct: 290 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 347
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 66/163 (40%), Gaps = 15/163 (9%)
Query: 24 LLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLW 79
L S A D +W N + T H V C + S L TGSAD+T LW
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
Query: 80 NVETGAQLFTFNFDSPARSVDFAVG------DKLAVITTDPFMELN--SAIHVKRIARDP 131
++ +L +F+S + F V LA TD + + S I ++ D
Sbjct: 310 DLR-NLKLKLHSFESHKDEI-FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 367
Query: 132 ADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIW 173
D E + I G +I+ W P II S ED I+++W
Sbjct: 368 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 141 ILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199
I G + W L+ ++ S +D + IWDT + K S H + L+
Sbjct: 222 IFTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF 281
Query: 200 AADGSHFL-TGSLDKSAKLWDARTLEL-IKTYVTER-PVNAVTMSPLLDHVVLGGGQD 254
L TGS DK+ LWD R L+L + ++ + + + V SP + ++ G D
Sbjct: 282 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTD 339
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 50 GHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLFTFNFDSPAR---SVDFAVGD 105
H V C + S L TGSAD+T LW++ +L +F+S V ++ +
Sbjct: 271 AHTAEVNCLSFNPYSEFILATGSADKTVALWDLR-NLKLKLHSFESHKDEIFQVQWSPHN 329
Query: 106 KLAVITTDPFMELN----SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161
+ + ++ LN S I ++ D D E + I G +I+ W P +
Sbjct: 330 ETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWV 389
Query: 162 I-SAGEDAIVRIW 173
I S ED I+++W
Sbjct: 390 ICSVSEDNIMQVW 402
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVW--FADNGERLGTYRGHNGAVWCCDVSR 62
+++ H + + ++ ++ LL S + D T +W + D+ E + GH G VW D +
Sbjct: 148 VLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDK 207
Query: 63 DS--MTLITGSADQTAKLW 79
L +GS D T ++W
Sbjct: 208 TEGVFRLCSGSDDSTVRVW 226
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 60/162 (37%), Gaps = 18/162 (11%)
Query: 67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 126
L GS D T +W E A TF D A K + D + L + K
Sbjct: 73 LAAGSFDSTVSIWAKEESADR-TFEMDLLAIIEGHENEVKGVAWSNDGYY-LATCSRDKS 130
Query: 127 IARDPADQGGES---VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW-----DTETG 178
+ D+ GE + +L+ + +W P + S+ D VRIW D E
Sbjct: 131 VWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV 190
Query: 179 KLLKESDKETGHKKTITS--LAKAADGSHFLTGSLDKSAKLW 218
+L GH+ T+ S K +GS D + ++W
Sbjct: 191 AVL------NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 149 INRAVWGPLNRTIISAGEDAIVRIW-DTETGKLLKESDKET---GHKKTITSLAKAADGS 204
I W P + + D+ V IW E+ E D GH+ + +A + DG
Sbjct: 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY 120
Query: 205 HFLTGSLDKSAKLWD 219
+ T S DKS +W+
Sbjct: 121 YLATCSRDKSVWIWE 135
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 68/179 (37%), Gaps = 21/179 (11%)
Query: 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDV 60
H++ + + + LL + + D T ++W + + L GH V
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 61 SRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS 120
S D L T S D++ +W + + + S D + ++ + +S
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK---HVIWHPSEALLASSS 172
Query: 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRT-----IISAGEDAIVRIW 173
RI +D D E V +L G +G VW ++T + S +D+ VR+W
Sbjct: 173 YDDTVRIWKDY-DDDWECVAVLNGHEG----TVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 170 VRIWDTE-TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228
VR W+ + +G+ + ++ + H + + + DGS T S DK+AK+WD + + I+
Sbjct: 66 VRCWEVQDSGQTIPKAQQM--HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQI 123
Query: 229 YVTERPVNAV 238
+ PV +
Sbjct: 124 AQHDAPVKTI 133
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF 206
G + W + +A D ++WD + + ++ + + KTI + KA + S
Sbjct: 87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHD-APVKTIHWI-KAPNYSCV 144
Query: 207 LTGSLDKSAKLWDARTLE-LIKTYVTERPVNAVTMSPL 243
+TGS DK+ K WD R+ ++ + ER A + P+
Sbjct: 145 MTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPM 182
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI 110
H G V S D + T S D+TAK+W++ + + D+P +++ + + +
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCV 144
Query: 111 TT 112
T
Sbjct: 145 MT 146
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 60/155 (38%), Gaps = 15/155 (9%)
Query: 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV----WCC 58
P + H P+ + ++ DG +F+ + D T +W + + + + H+ V W
Sbjct: 79 PKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHWI- 136
Query: 59 DVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP---- 114
+ + ++TGS D+T K W+ + + P R V +AV+ T
Sbjct: 137 -KAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL--PERCYCADVIYPMAVVATAERGLI 193
Query: 115 -FMELNSAIHVKRIARDPADQGGESVLILKGPQGR 148
+ N +RI P V I K Q +
Sbjct: 194 VYQLENQPSEFRRI-ESPLKHQHRCVAIFKDKQNK 227
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 35.4 bits (80), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 2/99 (2%)
Query: 158 NRTIISAGEDAIVRIWDT-ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 216
R I+ A + V +W+ E L+ + H +++++ + G+ ++GS D K
Sbjct: 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIK 152
Query: 217 LWDARTLELIKTYVTERP-VNAVTMSPLLDHVVLGGGQD 254
+WD ++ +Y V V SP D V L +D
Sbjct: 153 VWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSED 191
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 90/226 (39%), Gaps = 41/226 (18%)
Query: 22 GDLLFSCAKDHTPTVWFADNGER---LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK- 77
G L +C+ D T + F GE + T GH G VW D + I S K
Sbjct: 21 GKRLATCSSDKTIKI-FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 78 -LWNVETG--AQLFTFNFDSPA-RSVDFA---VGDKLAVITTDPFMELNSAIHVKRIARD 130
+W E G +Q+ S + SV +A G L V ++D + S + K
Sbjct: 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV---SVVEFK----- 131
Query: 131 PADQGGESVLILKGPQGRINRAVWGPL-------------NRTIISAGEDAIVRIW--DT 175
+ G S +I+ +N A W P +R ++ G D +V+IW ++
Sbjct: 132 --ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 176 ETGKLLKESDKETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLW 218
+ + ES E GH + +A + S+ + S D++ +W
Sbjct: 190 DAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 90/226 (39%), Gaps = 41/226 (18%)
Query: 22 GDLLFSCAKDHTPTVWFADNGER---LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK- 77
G L +C+ D T + F GE + T GH G VW D + I S K
Sbjct: 23 GKRLATCSSDKTIKI-FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 81
Query: 78 -LWNVETG--AQLFTFNFDSPA-RSVDFA---VGDKLAVITTDPFMELNSAIHVKRIARD 130
+W E G +Q+ S + SV +A G L V ++D + S + K
Sbjct: 82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV---SVVEFK----- 133
Query: 131 PADQGGESVLILKGPQGRINRAVWGPL-------------NRTIISAGEDAIVRIW--DT 175
+ G S +I+ +N A W P +R ++ G D +V+IW ++
Sbjct: 134 --ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 191
Query: 176 ETGKLLKESDKETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLW 218
+ + ES E GH + +A + S+ + S D++ +W
Sbjct: 192 DAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 90/226 (39%), Gaps = 41/226 (18%)
Query: 22 GDLLFSCAKDHTPTVWFADNGER---LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK- 77
G L +C+ D T + F GE + T GH G VW D + I S K
Sbjct: 21 GKRLATCSSDKTIKI-FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 78 -LWNVETG--AQLFTFNFDSPA-RSVDFA---VGDKLAVITTDPFMELNSAIHVKRIARD 130
+W E G +Q+ S + SV +A G L V ++D + S + K
Sbjct: 80 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV---SVVEFK----- 131
Query: 131 PADQGGESVLILKGPQGRINRAVWGPL-------------NRTIISAGEDAIVRIW--DT 175
+ G S +I+ +N A W P +R ++ G D +V+IW ++
Sbjct: 132 --ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 176 ETGKLLKESDKETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLW 218
+ + ES E GH + +A + S+ + S D++ +W
Sbjct: 190 DAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 234
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 41/226 (18%)
Query: 22 GDLLFSCAKDHTPTVWFADNGER---LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK- 77
G + +C+ D T + F GE + T GH G VW D + I S K
Sbjct: 21 GKRMATCSSDKTIKI-FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 78 -LWNVETG--AQLFTFNFDSPA-RSVDFA---VGDKLAVITTDPFMELNSAIHVKRIARD 130
+W E G +Q+ S + SV +A G L V ++D + S + K
Sbjct: 80 MIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKV---SVVEFK----- 131
Query: 131 PADQGGESVLILKGPQGRINRAVWGPL-------------NRTIISAGEDAIVRIW--DT 175
+ G S +I+ +N A W P +R ++ G D +V+IW ++
Sbjct: 132 --ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 176 ETGKLLKESDKETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLW 218
+ + ES E GH + +A + S+ + S D++ +W
Sbjct: 190 DAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 14/61 (22%)
Query: 208 TGSLDKSAKLWDARTLELIKTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH 263
T S+D + KLWD R ++ +Y+ E+PVNA +P D++ + TTD
Sbjct: 222 TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP----------TDSTKLLTTDQ 271
Query: 264 R 264
R
Sbjct: 272 R 272
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 34.7 bits (78), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 14/61 (22%)
Query: 208 TGSLDKSAKLWDARTLELIKTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH 263
T S+D + KLWD R ++ +Y+ E+PVNA +P D++ + TTD
Sbjct: 221 TSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP----------TDSTKLLTTDQ 270
Query: 264 R 264
R
Sbjct: 271 R 271
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPT-VWFADNGERLGTYR 49
+L+K H P+ ++ N+ GD++ +C++D T V+ DNG + +R
Sbjct: 173 VLVKAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFR 219
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 41/226 (18%)
Query: 22 GDLLFSCAKDHTPTVWFADNGER---LGTYRGHNGAVWCCDVSRDSM--TLITGSADQTA 76
G +C+ D T + F GE + T GH G VW D + L + S D
Sbjct: 21 GKRXATCSSDKTIKI-FEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV 79
Query: 77 KLWNVETG--AQLFTFNFDSPA-RSVDFA---VGDKLAVITTDPFMELNSAIHVKRIARD 130
+W E G +Q+ S + SV +A G L V ++D + S + K
Sbjct: 80 XIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKV---SVVEFK----- 131
Query: 131 PADQGGESVLILKGPQGRINRAVWGPL-------------NRTIISAGEDAIVRIW--DT 175
+ G S +I+ +N A W P +R ++ G D +V+IW ++
Sbjct: 132 --ENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS 189
Query: 176 ETGKLLKESDKETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLW 218
+ + ES E GH + +A + S+ + S D++ +W
Sbjct: 190 DAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIW 234
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 10/93 (10%)
Query: 1 MRPILMK------GHERPLTYLKYN-KDGDLLFSCAKDHTPTVWFADNGERLGTY---RG 50
+ PI M+ GH + LK++ +D +LL S +KDH +W + + G
Sbjct: 95 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 154
Query: 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83
H V D +++ D + KLW + +
Sbjct: 155 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS 187
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW-- 218
++S +D +R+W+ +T L+ GH+ + S G ++ +D S KLW
Sbjct: 126 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 185
Query: 219 -DARTLELIKTYVTERP 234
R + IK P
Sbjct: 186 NSKRMMNAIKESYDYNP 202
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 1 MRPILMK------GHERPLTYLKYN-KDGDLLFSCAKDHTPTVWFADNGERLGTY---RG 50
+ PI M+ GH + LK++ +D +LL S +KDH +W + + G
Sbjct: 136 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 195
Query: 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87
H V D +++ D + KLW + + +
Sbjct: 196 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 232
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW-- 218
++S +D +R+W+ +T L+ GH+ + S G ++ +D S KLW
Sbjct: 167 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226
Query: 219 -DARTLELIKTYVTERP 234
R + IK P
Sbjct: 227 NSKRMMNAIKESYDYNP 243
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 25 LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLIT 69
+F+ AK+H P + F D + +G R G ++ R M L+T
Sbjct: 266 MFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT 310
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 1 MRPILMK------GHERPLTYLKYN-KDGDLLFSCAKDHTPTVWFADNGERLGTY---RG 50
+ PI M+ GH + LK++ +D +LL S +KDH +W + + G
Sbjct: 99 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 158
Query: 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87
H V D +++ D + KLW + + +
Sbjct: 159 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 195
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW-- 218
++S +D +R+W+ +T L+ GH+ + S G ++ +D S KLW
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 219 -DARTLELIKTYVTERP 234
R + IK P
Sbjct: 190 NSKRMMNAIKESYDYNP 206
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 1 MRPILMK------GHERPLTYLKYN-KDGDLLFSCAKDHTPTVWFADNGERLGTY---RG 50
+ PI M+ GH + LK++ +D +LL S +KDH +W + + G
Sbjct: 100 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 159
Query: 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87
H V D +++ D + KLW + + +
Sbjct: 160 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 196
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW-- 218
++S +D +R+W+ +T L+ GH+ + S G ++ +D S KLW
Sbjct: 131 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190
Query: 219 -DARTLELIKTYVTERP 234
R + IK P
Sbjct: 191 NSKRMMNAIKESYDYNP 207
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 1 MRPILMK------GHERPLTYLKYN-KDGDLLFSCAKDHTPTVWFADNGERLGTY---RG 50
+ PI M+ GH + LK++ +D +LL S +KDH +W + + G
Sbjct: 99 INPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG 158
Query: 51 HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87
H V D +++ D + KLW + + +
Sbjct: 159 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 195
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW-- 218
++S +D +R+W+ +T L+ GH+ + S G ++ +D S KLW
Sbjct: 130 LLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Query: 219 -DARTLELIKTYVTERP 234
R + IK P
Sbjct: 190 NSKRMMNAIKESYDYNP 206
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 89/241 (36%), Gaps = 58/241 (24%)
Query: 6 MKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAV-WCCDV 60
++GHE P+ + + G++L SC+ D +W +NG E+ + GH+ +V C
Sbjct: 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWA 112
Query: 61 SRD-SMTLITGSADQTAKLWNVETGA-QLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL 118
D + L GS+D GA L T+ + ++
Sbjct: 113 PHDYGLILACGSSD----------GAISLLTYTGEGQWE-----------------VKKI 145
Query: 119 NSA--IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE 176
N+A I ++ PA G ++ P G+ + + S G D ++++W E
Sbjct: 146 NNAHTIGCNAVSWAPAVVPGS---LIDHPSGQKPNYI-----KRFASGGCDNLIKLWKEE 197
Query: 177 TGKLLKESDKETGHKKTITSLAKA--------------ADGSHFLTGSLDKSAKLWDART 222
KE K H + +A A DG F+ D S+ W +
Sbjct: 198 EDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKL 257
Query: 223 L 223
L
Sbjct: 258 L 258
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 18/143 (12%)
Query: 158 NRTIISAGEDAIVRIW---DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214
N I++ GED + ++ E + + +D T H T + LT +
Sbjct: 160 NPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPE------ILTVNSIGQ 213
Query: 215 AKLWDARTL-----ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE 269
K+WD R +++ P++ V P HVV GGQD ++ D R G
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDG-MLSIWDVRQGTMP 272
Query: 270 AKFFDKILQEEIGGVKGHFGPIN 292
K + E+ V HF P N
Sbjct: 273 VSLL-KAHEAEMWEV--HFHPSN 292
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 7/56 (12%)
Query: 5 LMKGHERPLTYLKY-NKDGDLLFSCAKDHTPTVWFADNGERLGTY--RGHNGAVWC 57
L +GH++ + L + ++D LL S +D+T +W ++ E+L + RG+ WC
Sbjct: 257 LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN----WC 308
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 11/53 (20%)
Query: 49 RGHNGAV----WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPAR 97
+GH + WC +D L++ D T LWN E+ QL F PAR
Sbjct: 259 QGHQKGILSLDWC---HQDEHLLLSSGRDNTVLLWNPESAEQLSQF----PAR 304
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 163 SAGEDAIVRIWDTETGKLLKE--SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
+ G DA +R+WD T K +++ DK+ + + +A ++ SLD + ++
Sbjct: 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG--NGRIISLSLDGTLNFYEL 326
Query: 221 RTLELIKTYV-TERPVNAVTMSPLL 244
E++KT + + A+T++PL+
Sbjct: 327 GHDEVLKTISGHNKGITALTVNPLI 351
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 163 SAGEDAIVRIWDTETGKLLKE--SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220
+ G DA +R+WD T K +++ DK+ + + +A ++ SLD + ++
Sbjct: 269 TVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG--NGRIISLSLDGTLNFYEL 326
Query: 221 RTLELIKTYV-TERPVNAVTMSPLL 244
E++KT + + A+T++PL+
Sbjct: 327 GHDEVLKTISGHNKGITALTVNPLI 351
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHT 33
+L+K H P+ ++ N+ D++ +C++D T
Sbjct: 189 VLIKAHTNPIKMVRLNRKSDMVATCSQDGT 218
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 12/160 (7%)
Query: 144 GPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD 202
G G I + PLN ++ + R+ D + G +L+ SL +A
Sbjct: 162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVSAS 220
Query: 203 GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262
+TG + L + EL + ++ V V ++P D + D + V D
Sbjct: 221 SRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWD 279
Query: 263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302
R + +A F + H P+NA F+PDG R
Sbjct: 280 LRQVRGKASFLYSL---------PHRHPVNAACFSPDGAR 310
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 41 NGERLGTYRGHNGAVW------CCDVSRDSMTLITGSADQTAKLWNVET----GAQLFTF 90
+G+ L R H V CCD L T S DQT K+W++ + L++
Sbjct: 239 DGKELWNLRMHKKKVTHVALNPCCD-----WFLATASVDQTVKIWDLRQVRGKASFLYSL 293
Query: 91 NFDSPARSVDFAVGDKLAVITTDPFMEL 118
P + F+ D ++TTD E+
Sbjct: 294 PHRHPVNAACFS-PDGARLLTTDQKSEI 320
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 12/160 (7%)
Query: 144 GPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD 202
G G I + PLN ++ + R+ D + G +L+ SL +A
Sbjct: 162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVSAS 220
Query: 203 GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262
+TG + L + EL + ++ V V ++P D + D + V D
Sbjct: 221 SRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWD 279
Query: 263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302
R + +A F + H P+NA F+PDG R
Sbjct: 280 LRQVRGKASFLYSL---------PHRHPVNAACFSPDGAR 310
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 41 NGERLGTYRGHNGAVW------CCDVSRDSMTLITGSADQTAKLWNVET----GAQLFTF 90
+G+ L R H V CCD L T S DQT K+W++ + L++
Sbjct: 239 DGKELWNLRMHKKKVTHVALNPCCD-----WFLATASVDQTVKIWDLRQVRGKASFLYSL 293
Query: 91 NFDSPARSVDFAVGDKLAVITTDPFMEL 118
P + F+ D ++TTD E+
Sbjct: 294 PHRHPVNAACFS-PDGARLLTTDQKSEI 320
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 61/160 (38%), Gaps = 12/160 (7%)
Query: 144 GPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD 202
G G I + PLN ++ + R+ D + G +L+ SL +A
Sbjct: 163 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK-GNILRVFASSDTINIWFCSLDVSAS 221
Query: 203 GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262
+TG + L + EL + ++ V V ++P D + D + V D
Sbjct: 222 SRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQT-VKIWD 280
Query: 263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302
R + +A F + H P+NA F+PDG R
Sbjct: 281 LRQVRGKASFLYSL---------PHRHPVNAACFSPDGAR 311
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 16/88 (18%)
Query: 41 NGERLGTYRGHNGAVW------CCDVSRDSMTLITGSADQTAKLWNVET----GAQLFTF 90
+G+ L R H V CCD L T S DQT K+W++ + L++
Sbjct: 240 DGKELWNLRMHKKKVTHVALNPCCD-----WFLATASVDQTVKIWDLRQVRGKASFLYSL 294
Query: 91 NFDSPARSVDFAVGDKLAVITTDPFMEL 118
P + F+ D ++TTD E+
Sbjct: 295 PHRHPVNAACFS-PDGARLLTTDQKSEI 321
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299
A++ R ++ ++ ++L+E +GG++G + LAF P+
Sbjct: 304 AISKAVLRVNEYMPRYAVQLLEERLGGLRGRHVGVLGLAFKPN 346
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK-------ESDKETGHKKTITSLAKAA 201
+N + P ++ + +AG D I+ W+ +T K +K +S + I LA +
Sbjct: 254 VNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLA-TS 312
Query: 202 DGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232
D + ++D++ +L +A ++ +I Y E
Sbjct: 313 DDTFKTNAAIDQTIEL-NASSIYIIFDYENE 342
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,800,896
Number of Sequences: 62578
Number of extensions: 410280
Number of successful extensions: 2015
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 923
Number of HSP's gapped (non-prelim): 515
length of query: 313
length of database: 14,973,337
effective HSP length: 99
effective length of query: 214
effective length of database: 8,778,115
effective search space: 1878516610
effective search space used: 1878516610
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)