Query 021399
Match_columns 313
No_of_seqs 166 out of 2333
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 02:38:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021399.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021399hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0643 Translation initiation 100.0 9.5E-55 2.1E-59 334.9 28.2 302 1-304 1-303 (327)
2 KOG0271 Notchless-like WD40 re 100.0 7.9E-43 1.7E-47 281.3 23.8 274 5-304 110-467 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-41 3.5E-46 276.7 21.7 270 8-305 173-447 (459)
4 KOG0286 G-protein beta subunit 100.0 6.1E-38 1.3E-42 245.0 29.1 272 4-304 49-331 (343)
5 KOG0279 G protein beta subunit 100.0 5.8E-38 1.3E-42 243.6 25.0 231 4-303 57-298 (315)
6 KOG0272 U4/U6 small nuclear ri 100.0 5.6E-38 1.2E-42 256.1 17.9 234 4-251 211-449 (459)
7 KOG0273 Beta-transducin family 100.0 9.3E-36 2E-40 246.2 27.6 269 11-310 236-515 (524)
8 KOG0279 G protein beta subunit 100.0 1.5E-35 3.2E-40 230.3 24.1 233 5-308 10-251 (315)
9 KOG0318 WD40 repeat stress pro 100.0 9.5E-35 2.1E-39 243.2 30.3 276 5-305 185-547 (603)
10 KOG0271 Notchless-like WD40 re 100.0 6.2E-36 1.3E-40 241.6 21.8 245 5-252 152-471 (480)
11 KOG0263 Transcription initiati 100.0 3.4E-36 7.3E-41 262.9 21.5 239 5-300 446-697 (707)
12 KOG0263 Transcription initiati 100.0 5.2E-35 1.1E-39 255.5 21.9 231 6-305 374-636 (707)
13 KOG0284 Polyadenylation factor 100.0 1.9E-35 4.1E-40 240.4 14.3 267 10-304 96-366 (464)
14 KOG0285 Pleiotropic regulator 100.0 2.6E-34 5.6E-39 230.4 20.0 230 4-303 145-375 (460)
15 KOG0291 WD40-repeat-containing 100.0 6.8E-33 1.5E-37 241.0 29.7 244 5-265 345-613 (893)
16 KOG0266 WD40 repeat-containing 100.0 8.1E-33 1.8E-37 245.4 27.4 237 4-307 197-441 (456)
17 KOG0265 U5 snRNP-specific prot 100.0 1.5E-32 3.2E-37 215.6 25.3 278 1-307 37-327 (338)
18 cd00200 WD40 WD40 domain, foun 100.0 7.9E-32 1.7E-36 225.0 31.6 275 4-307 3-280 (289)
19 KOG0295 WD40 repeat-containing 100.0 3.2E-34 7E-39 230.2 15.3 247 5-307 103-353 (406)
20 KOG0278 Serine/threonine kinas 100.0 5.8E-34 1.3E-38 218.4 15.2 275 2-305 6-284 (334)
21 KOG0296 Angio-associated migra 100.0 3.3E-32 7.2E-37 218.7 25.5 276 3-304 57-384 (399)
22 KOG0315 G-protein beta subunit 100.0 3.5E-32 7.5E-37 208.4 23.3 228 5-240 78-308 (311)
23 KOG0291 WD40-repeat-containing 100.0 2.5E-31 5.3E-36 231.3 29.7 286 4-305 139-495 (893)
24 KOG0266 WD40 repeat-containing 100.0 2.1E-31 4.5E-36 236.4 25.9 231 5-303 153-394 (456)
25 KOG0282 mRNA splicing factor [ 100.0 2.7E-32 5.7E-37 226.5 16.6 270 4-301 208-487 (503)
26 KOG0293 WD40 repeat-containing 100.0 1.4E-31 3.1E-36 218.3 19.9 269 4-302 218-496 (519)
27 KOG0315 G-protein beta subunit 100.0 4.5E-30 9.8E-35 196.9 26.0 268 5-297 35-309 (311)
28 KOG0645 WD40 repeat protein [G 100.0 2.4E-29 5.3E-34 195.0 28.3 272 3-299 7-291 (312)
29 KOG0316 Conserved WD40 repeat- 100.0 2.4E-30 5.2E-35 196.9 22.1 268 4-301 11-283 (307)
30 KOG1407 WD40 repeat protein [F 100.0 2.5E-30 5.5E-35 199.5 22.4 275 2-307 12-291 (313)
31 PTZ00421 coronin; Provisional 100.0 5.4E-30 1.2E-34 227.0 27.4 207 3-265 68-291 (493)
32 KOG0295 WD40 repeat-containing 100.0 1.7E-30 3.7E-35 208.8 19.4 233 4-250 144-394 (406)
33 KOG0286 G-protein beta subunit 100.0 9.2E-30 2E-34 199.3 23.0 193 4-250 139-333 (343)
34 KOG0640 mRNA cleavage stimulat 100.0 2.8E-30 6E-35 203.9 19.4 283 3-310 105-416 (430)
35 KOG0281 Beta-TrCP (transducin 100.0 5.9E-32 1.3E-36 216.4 9.9 252 9-297 196-458 (499)
36 KOG0319 WD40-repeat-containing 100.0 2.4E-30 5.3E-35 224.6 20.3 241 4-304 359-605 (775)
37 KOG0318 WD40 repeat stress pro 100.0 5.1E-28 1.1E-32 203.1 29.5 270 5-304 54-336 (603)
38 KOG0283 WD40 repeat-containing 100.0 2.8E-29 6.2E-34 221.3 21.8 227 6-304 262-562 (712)
39 PTZ00420 coronin; Provisional 100.0 3.1E-28 6.8E-33 217.0 28.7 227 5-299 69-317 (568)
40 KOG0273 Beta-transducin family 100.0 2.6E-28 5.5E-33 202.3 25.1 235 4-253 270-514 (524)
41 KOG0275 Conserved WD40 repeat- 100.0 1.9E-30 4.1E-35 206.2 10.9 189 8-250 211-411 (508)
42 KOG0647 mRNA export protein (c 100.0 1.2E-27 2.6E-32 188.3 25.9 270 8-308 25-313 (347)
43 KOG0292 Vesicle coat complex C 100.0 8.1E-28 1.7E-32 212.8 27.3 293 6-306 47-383 (1202)
44 KOG0284 Polyadenylation factor 100.0 1.1E-29 2.3E-34 207.0 14.0 234 4-254 132-371 (464)
45 KOG2096 WD40 repeat protein [G 100.0 3.7E-28 8E-33 192.6 21.9 273 5-307 81-392 (420)
46 KOG0305 Anaphase promoting com 100.0 1.3E-28 2.9E-33 211.5 21.0 232 10-309 217-452 (484)
47 KOG0277 Peroxisomal targeting 100.0 1E-28 2.2E-33 190.0 16.7 222 10-299 60-289 (311)
48 KOG0285 Pleiotropic regulator 100.0 2.4E-28 5.2E-33 196.3 18.3 240 4-306 187-427 (460)
49 PLN00181 protein SPA1-RELATED; 100.0 1.8E-26 3.9E-31 219.0 34.3 281 6-307 479-782 (793)
50 KOG0645 WD40 repeat protein [G 100.0 5.7E-27 1.2E-31 181.9 25.2 235 4-255 55-303 (312)
51 KOG0265 U5 snRNP-specific prot 100.0 8.5E-28 1.8E-32 188.9 20.8 236 5-253 85-329 (338)
52 KOG0293 WD40 repeat-containing 100.0 3.2E-28 6.9E-33 198.8 18.7 238 5-256 264-506 (519)
53 KOG0319 WD40-repeat-containing 100.0 2.9E-28 6.3E-33 211.8 18.4 201 6-262 407-618 (775)
54 PTZ00421 coronin; Provisional 100.0 1.7E-26 3.7E-31 204.8 30.0 238 9-305 19-276 (493)
55 KOG0276 Vesicle coat complex C 100.0 2.2E-27 4.9E-32 203.0 23.3 274 4-304 7-285 (794)
56 KOG1446 Histone H3 (Lys4) meth 100.0 2.5E-26 5.5E-31 182.1 27.2 243 1-251 4-294 (311)
57 KOG0289 mRNA splicing factor [ 100.0 2.8E-27 6E-32 194.4 22.2 236 5-305 256-493 (506)
58 KOG0276 Vesicle coat complex C 100.0 8.4E-28 1.8E-32 205.6 19.8 192 4-250 91-287 (794)
59 PLN00181 protein SPA1-RELATED; 100.0 4.2E-26 9E-31 216.5 32.9 229 9-252 531-783 (793)
60 KOG0292 Vesicle coat complex C 100.0 2E-27 4.3E-32 210.4 21.7 270 10-304 9-308 (1202)
61 cd00200 WD40 WD40 domain, foun 100.0 1.3E-25 2.8E-30 187.4 30.6 233 4-251 45-280 (289)
62 KOG0281 Beta-TrCP (transducin 100.0 3.3E-28 7.1E-33 195.0 11.7 224 4-254 231-469 (499)
63 KOG0973 Histone transcription 100.0 7.5E-27 1.6E-31 211.1 20.8 250 3-299 6-276 (942)
64 KOG0268 Sof1-like rRNA process 100.0 1.1E-27 2.3E-32 192.8 12.9 226 5-304 61-288 (433)
65 KOG1407 WD40 repeat protein [F 100.0 1.4E-25 3E-30 173.4 23.9 235 4-254 58-294 (313)
66 KOG0313 Microtubule binding pr 100.0 8.3E-26 1.8E-30 182.9 22.7 270 9-299 104-400 (423)
67 KOG0300 WD40 repeat-containing 99.9 2.8E-26 6E-31 182.1 19.4 268 4-300 142-456 (481)
68 KOG0310 Conserved WD40 repeat- 99.9 6.1E-26 1.3E-30 189.0 22.2 195 4-254 104-301 (487)
69 KOG0274 Cdc4 and related F-box 99.9 9.2E-26 2E-30 200.6 24.7 237 6-267 245-485 (537)
70 KOG0274 Cdc4 and related F-box 99.9 1.8E-25 3.9E-30 198.7 25.6 257 5-297 202-463 (537)
71 KOG0282 mRNA splicing factor [ 99.9 8.2E-27 1.8E-31 194.0 15.5 240 4-254 252-496 (503)
72 PTZ00420 coronin; Provisional 99.9 1.3E-24 2.8E-29 193.9 30.6 189 28-264 50-248 (568)
73 KOG0299 U3 snoRNP-associated p 99.9 7.4E-26 1.6E-30 187.3 21.0 234 7-254 199-447 (479)
74 KOG0296 Angio-associated migra 99.9 1.2E-25 2.5E-30 181.2 21.3 239 3-252 99-388 (399)
75 KOG0310 Conserved WD40 repeat- 99.9 2.6E-26 5.7E-31 191.2 18.1 231 3-304 20-254 (487)
76 KOG0278 Serine/threonine kinas 99.9 1.6E-26 3.5E-31 177.6 15.5 203 7-224 97-300 (334)
77 KOG0772 Uncharacterized conser 99.9 5.5E-26 1.2E-30 190.5 19.8 251 2-262 159-486 (641)
78 KOG0306 WD40-repeat-containing 99.9 1.2E-25 2.7E-30 196.0 21.7 242 4-262 367-662 (888)
79 KOG0288 WD40 repeat protein Ti 99.9 3E-26 6.6E-31 187.2 15.2 235 4-309 213-452 (459)
80 KOG0313 Microtubule binding pr 99.9 1.7E-25 3.6E-30 181.2 18.6 193 7-255 190-410 (423)
81 KOG0306 WD40-repeat-containing 99.9 1.9E-24 4.2E-29 188.6 26.4 229 54-305 414-651 (888)
82 KOG1273 WD40 repeat protein [G 99.9 3.5E-25 7.6E-30 175.5 19.3 242 13-268 26-284 (405)
83 KOG0308 Conserved WD40 repeat- 99.9 1.2E-25 2.7E-30 193.1 17.5 222 5-273 68-294 (735)
84 KOG0316 Conserved WD40 repeat- 99.9 9.4E-25 2E-29 166.5 20.3 232 5-254 54-292 (307)
85 KOG0973 Histone transcription 99.9 1.5E-24 3.3E-29 196.3 23.3 235 5-304 64-341 (942)
86 KOG1332 Vesicle coat complex C 99.9 3.4E-25 7.5E-30 169.7 16.2 240 5-254 6-278 (299)
87 KOG0267 Microtubule severing p 99.9 1.5E-26 3.3E-31 200.8 9.1 238 5-312 23-261 (825)
88 KOG0277 Peroxisomal targeting 99.9 5.1E-25 1.1E-29 169.7 14.6 195 5-254 99-300 (311)
89 KOG0299 U3 snoRNP-associated p 99.9 6.4E-24 1.4E-28 175.9 21.8 267 4-302 136-439 (479)
90 KOG0294 WD40 repeat-containing 99.9 6.3E-24 1.4E-28 168.3 20.6 217 5-239 78-304 (362)
91 KOG0269 WD40 repeat-containing 99.9 6.9E-25 1.5E-29 191.9 15.4 218 15-298 92-319 (839)
92 KOG0275 Conserved WD40 repeat- 99.9 9.7E-25 2.1E-29 173.8 14.3 231 6-304 259-495 (508)
93 KOG4283 Transcription-coupled 99.9 1.7E-23 3.7E-28 164.6 21.0 210 5-225 38-280 (397)
94 KOG1036 Mitotic spindle checkp 99.9 2.1E-22 4.5E-27 159.3 26.9 268 9-308 12-294 (323)
95 KOG1274 WD40 repeat protein [G 99.9 1.1E-22 2.4E-27 181.2 28.3 275 7-312 10-294 (933)
96 KOG0264 Nucleosome remodeling 99.9 4.9E-24 1.1E-28 176.3 17.7 248 7-302 121-387 (422)
97 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 4.9E-22 1.1E-26 168.2 30.0 266 6-298 27-300 (300)
98 KOG0283 WD40 repeat-containing 99.9 1E-23 2.3E-28 186.4 19.8 201 5-263 364-575 (712)
99 KOG0647 mRNA export protein (c 99.9 5.7E-23 1.2E-27 162.0 21.2 239 2-254 64-315 (347)
100 KOG0267 Microtubule severing p 99.9 3.2E-25 7E-30 192.6 9.3 190 6-250 66-256 (825)
101 KOG0641 WD40 repeat protein [G 99.9 2E-21 4.4E-26 147.8 27.7 275 9-306 31-335 (350)
102 KOG0289 mRNA splicing factor [ 99.9 8.7E-23 1.9E-27 168.1 21.6 231 9-306 218-450 (506)
103 KOG0294 WD40 repeat-containing 99.9 1.2E-22 2.6E-27 161.1 19.6 226 5-304 38-267 (362)
104 KOG0641 WD40 repeat protein [G 99.9 8E-22 1.7E-26 149.9 22.5 196 7-251 86-338 (350)
105 KOG0646 WD40 repeat protein [G 99.9 5.3E-23 1.2E-27 170.7 17.0 192 5-249 118-336 (476)
106 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 9.1E-21 2E-25 160.4 30.1 254 22-305 1-265 (300)
107 KOG2055 WD40 repeat protein [G 99.9 2.5E-22 5.3E-27 166.7 19.1 235 10-306 213-453 (514)
108 KOG0302 Ribosome Assembly prot 99.9 7E-23 1.5E-27 166.0 15.5 205 1-255 201-431 (440)
109 KOG2106 Uncharacterized conser 99.9 8.7E-21 1.9E-25 159.2 27.3 257 11-303 247-506 (626)
110 KOG0646 WD40 repeat protein [G 99.9 8.3E-22 1.8E-26 163.7 21.0 228 11-299 82-330 (476)
111 KOG0288 WD40 repeat protein Ti 99.9 2.3E-23 4.9E-28 170.5 10.6 232 5-304 170-403 (459)
112 KOG1446 Histone H3 (Lys4) meth 99.9 1.1E-20 2.4E-25 150.1 25.3 237 45-304 7-291 (311)
113 KOG0772 Uncharacterized conser 99.9 2.5E-22 5.4E-27 168.8 16.7 241 45-303 160-424 (641)
114 KOG0305 Anaphase promoting com 99.9 7.5E-22 1.6E-26 170.1 20.0 218 16-304 183-403 (484)
115 KOG1539 WD repeat protein [Gen 99.9 1.5E-20 3.3E-25 166.2 28.2 289 5-307 197-595 (910)
116 KOG0308 Conserved WD40 repeat- 99.9 1.3E-22 2.8E-27 174.7 14.0 224 15-302 29-269 (735)
117 KOG0264 Nucleosome remodeling 99.9 8.2E-22 1.8E-26 163.3 17.5 199 5-255 172-396 (422)
118 KOG0301 Phospholipase A2-activ 99.9 3.5E-21 7.7E-26 167.0 21.9 219 5-246 52-273 (745)
119 KOG1274 WD40 repeat protein [G 99.9 2E-21 4.3E-26 173.4 19.4 195 5-247 91-285 (933)
120 KOG4328 WD40 protein [Function 99.9 6.1E-21 1.3E-25 158.3 20.6 291 4-306 180-493 (498)
121 KOG0643 Translation initiation 99.9 1E-20 2.2E-25 147.1 20.4 206 5-221 47-317 (327)
122 KOG1036 Mitotic spindle checkp 99.9 2.1E-20 4.5E-25 148.1 22.2 235 5-252 49-294 (323)
123 KOG0640 mRNA cleavage stimulat 99.9 7.8E-22 1.7E-26 156.4 13.9 210 46-267 106-338 (430)
124 KOG2445 Nuclear pore complex c 99.9 6.5E-20 1.4E-24 145.3 24.1 253 6-261 9-315 (361)
125 KOG0302 Ribosome Assembly prot 99.9 5.8E-21 1.3E-25 154.9 17.4 208 6-264 147-378 (440)
126 KOG1408 WD40 repeat protein [F 99.9 7.6E-21 1.6E-25 165.7 18.5 239 9-258 458-709 (1080)
127 KOG0301 Phospholipase A2-activ 99.9 2.4E-20 5.2E-25 161.9 21.3 259 4-302 8-273 (745)
128 KOG0300 WD40 repeat-containing 99.9 1.1E-20 2.3E-25 150.5 17.5 223 5-242 185-454 (481)
129 KOG2106 Uncharacterized conser 99.9 8.2E-20 1.8E-24 153.4 23.2 196 7-220 284-520 (626)
130 KOG1063 RNA polymerase II elon 99.9 2.6E-20 5.7E-25 161.6 20.8 285 4-305 185-589 (764)
131 KOG2048 WD40 repeat protein [G 99.9 1.2E-18 2.6E-23 151.1 28.7 234 11-255 26-268 (691)
132 KOG1408 WD40 repeat protein [F 99.9 4.5E-20 9.7E-25 160.9 18.9 256 24-305 394-700 (1080)
133 KOG0269 WD40 repeat-containing 99.9 6.7E-21 1.4E-25 167.2 13.8 198 5-255 128-332 (839)
134 KOG1539 WD repeat protein [Gen 99.9 1.1E-19 2.3E-24 160.9 20.2 196 10-262 448-646 (910)
135 KOG4378 Nuclear protein COP1 [ 99.9 1.7E-20 3.6E-25 157.3 14.4 221 14-300 83-305 (673)
136 KOG0321 WD40 repeat-containing 99.8 5.1E-20 1.1E-24 158.6 16.5 255 6-299 96-371 (720)
137 KOG0268 Sof1-like rRNA process 99.8 5.7E-20 1.2E-24 148.5 15.6 232 4-255 103-337 (433)
138 KOG0639 Transducin-like enhanc 99.8 6.2E-20 1.3E-24 154.1 15.5 224 10-304 465-690 (705)
139 KOG1538 Uncharacterized conser 99.8 5.1E-19 1.1E-23 153.4 21.1 261 12-305 14-280 (1081)
140 KOG1009 Chromatin assembly com 99.8 1.5E-19 3.3E-24 148.0 16.6 173 11-222 14-196 (434)
141 KOG0303 Actin-binding protein 99.8 4.1E-19 8.8E-24 145.1 18.9 196 5-256 76-287 (472)
142 KOG1063 RNA polymerase II elon 99.8 1.2E-18 2.5E-23 151.6 22.1 274 5-302 49-375 (764)
143 KOG0642 Cell-cycle nuclear pro 99.8 1E-19 2.2E-24 154.7 15.0 243 5-305 289-548 (577)
144 KOG2096 WD40 repeat protein [G 99.8 5.9E-19 1.3E-23 140.6 17.4 198 8-251 185-392 (420)
145 KOG1332 Vesicle coat complex C 99.8 2.3E-19 5E-24 137.9 14.5 207 4-221 50-286 (299)
146 KOG0642 Cell-cycle nuclear pro 99.8 1.8E-19 3.9E-24 153.3 14.4 212 5-230 339-570 (577)
147 KOG0639 Transducin-like enhanc 99.8 1.4E-19 3.1E-24 152.0 13.1 185 12-253 511-695 (705)
148 KOG0650 WD40 repeat nucleolar 99.8 4.5E-18 9.8E-23 145.8 20.4 288 5-302 395-719 (733)
149 KOG2048 WD40 repeat protein [G 99.8 4.6E-17 1E-21 141.4 26.7 233 4-256 62-312 (691)
150 KOG0270 WD40 repeat-containing 99.8 3.3E-18 7.2E-23 141.7 16.4 193 7-254 240-440 (463)
151 KOG0644 Uncharacterized conser 99.8 1.1E-19 2.4E-24 160.9 7.8 230 5-305 185-455 (1113)
152 KOG1034 Transcriptional repres 99.8 5.3E-18 1.1E-22 135.7 13.9 217 5-221 130-383 (385)
153 KOG2055 WD40 repeat protein [G 99.8 1.6E-17 3.5E-22 138.3 17.1 232 11-306 258-500 (514)
154 KOG0307 Vesicle coat complex C 99.8 1.4E-18 3.1E-23 158.8 11.8 227 10-300 64-308 (1049)
155 KOG0771 Prolactin regulatory e 99.8 1.2E-17 2.7E-22 137.7 15.9 200 14-221 148-354 (398)
156 KOG4283 Transcription-coupled 99.8 1.6E-17 3.5E-22 131.2 15.6 220 47-308 38-266 (397)
157 KOG1034 Transcriptional repres 99.8 8.9E-18 1.9E-22 134.4 14.0 236 8-306 87-371 (385)
158 KOG0303 Actin-binding protein 99.8 2.9E-17 6.4E-22 134.4 17.1 155 47-251 76-234 (472)
159 KOG0270 WD40 repeat-containing 99.8 2.6E-17 5.6E-22 136.5 16.7 179 22-255 192-396 (463)
160 COG2319 FOG: WD40 repeat [Gene 99.8 1.3E-14 2.8E-19 127.5 34.9 268 5-297 60-337 (466)
161 KOG0322 G-protein beta subunit 99.8 3.1E-17 6.6E-22 127.7 15.4 278 5-311 9-318 (323)
162 KOG4227 WD40 repeat protein [G 99.8 2.5E-16 5.4E-21 129.1 21.2 287 5-303 51-372 (609)
163 KOG2445 Nuclear pore complex c 99.8 2.9E-16 6.4E-21 124.7 20.8 229 6-237 55-337 (361)
164 KOG2919 Guanine nucleotide-bin 99.8 5.9E-17 1.3E-21 129.5 16.8 222 19-252 120-360 (406)
165 KOG1524 WD40 repeat-containing 99.8 1.9E-17 4.1E-22 140.4 14.8 203 22-253 75-277 (737)
166 KOG0649 WD40 repeat protein [G 99.8 1.2E-16 2.6E-21 123.2 17.2 174 12-230 12-195 (325)
167 KOG4328 WD40 protein [Function 99.8 7.4E-17 1.6E-21 134.3 17.1 203 4-254 228-486 (498)
168 COG2319 FOG: WD40 repeat [Gene 99.7 1.6E-14 3.6E-19 126.9 32.5 275 5-305 150-429 (466)
169 KOG4378 Nuclear protein COP1 [ 99.7 1.5E-16 3.2E-21 133.9 17.6 186 4-244 115-305 (673)
170 KOG0650 WD40 repeat nucleolar 99.7 3.6E-16 7.8E-21 134.3 18.7 237 46-299 394-661 (733)
171 PRK01742 tolB translocation pr 99.7 6.6E-16 1.4E-20 137.0 20.9 221 3-299 196-426 (429)
172 KOG1007 WD repeat protein TSSC 99.7 1.1E-15 2.4E-20 120.6 18.8 252 5-307 58-350 (370)
173 KOG0321 WD40 repeat-containing 99.7 3.7E-16 8E-21 135.1 17.4 196 15-262 54-299 (720)
174 KOG1009 Chromatin assembly com 99.7 2.5E-16 5.4E-21 129.4 15.6 100 5-104 60-176 (434)
175 KOG1963 WD40 repeat protein [G 99.7 7.3E-15 1.6E-19 131.5 25.4 283 3-307 9-311 (792)
176 KOG0307 Vesicle coat complex C 99.7 4.5E-17 9.8E-22 149.1 11.6 209 5-224 111-330 (1049)
177 KOG1523 Actin-related protein 99.7 2.1E-15 4.4E-20 120.6 18.7 165 5-220 5-175 (361)
178 KOG1007 WD repeat protein TSSC 99.7 1.8E-15 4E-20 119.3 17.5 195 8-258 121-356 (370)
179 KOG1310 WD40 repeat protein [G 99.7 5.1E-16 1.1E-20 132.2 13.6 220 4-267 44-306 (758)
180 KOG2139 WD40 repeat protein [G 99.7 2.2E-14 4.8E-19 116.6 22.1 253 12-308 100-365 (445)
181 KOG1445 Tumor-specific antigen 99.7 8.7E-16 1.9E-20 132.9 13.8 189 12-254 629-835 (1012)
182 KOG1963 WD40 repeat protein [G 99.7 1.6E-14 3.6E-19 129.2 21.9 290 7-305 202-526 (792)
183 PRK03629 tolB translocation pr 99.7 3.6E-14 7.9E-19 125.7 24.2 225 3-298 191-427 (429)
184 PRK04922 tolB translocation pr 99.7 4.1E-14 8.9E-19 125.8 22.6 224 3-298 196-432 (433)
185 KOG1538 Uncharacterized conser 99.7 7.3E-15 1.6E-19 128.0 16.9 228 4-254 47-285 (1081)
186 KOG1445 Tumor-specific antigen 99.7 1.8E-15 3.9E-20 131.0 13.0 187 17-251 586-783 (1012)
187 PRK11028 6-phosphogluconolacto 99.7 4.9E-13 1.1E-17 115.0 28.1 263 25-305 5-290 (330)
188 KOG0290 Conserved WD40 repeat- 99.6 2.1E-14 4.6E-19 113.5 17.5 243 7-309 93-357 (364)
189 KOG1188 WD40 repeat protein [G 99.6 1.5E-14 3.3E-19 116.6 15.6 201 23-229 41-250 (376)
190 PRK02889 tolB translocation pr 99.6 9.7E-14 2.1E-18 123.1 22.3 224 3-298 188-424 (427)
191 PRK11028 6-phosphogluconolacto 99.6 1.9E-12 4.2E-17 111.3 29.5 237 11-253 35-294 (330)
192 KOG0649 WD40 repeat protein [G 99.6 2E-13 4.4E-18 105.5 20.5 158 12-221 116-274 (325)
193 PF08662 eIF2A: Eukaryotic tra 99.6 1.4E-13 3.1E-18 108.2 20.4 154 15-229 10-186 (194)
194 KOG2919 Guanine nucleotide-bin 99.6 1.7E-13 3.7E-18 110.0 20.5 267 12-304 51-356 (406)
195 PRK05137 tolB translocation pr 99.6 3.7E-13 8E-18 119.8 24.9 191 3-252 194-396 (435)
196 PRK01742 tolB translocation pr 99.6 4.6E-14 1E-18 125.2 18.8 201 31-308 183-391 (429)
197 KOG1587 Cytoplasmic dynein int 99.6 1.1E-13 2.4E-18 123.1 20.7 257 3-311 235-509 (555)
198 KOG4497 Uncharacterized conser 99.6 3.9E-13 8.5E-18 108.2 21.4 276 13-306 51-420 (447)
199 KOG2110 Uncharacterized conser 99.6 7.8E-13 1.7E-17 107.9 22.9 229 10-255 5-241 (391)
200 PRK05137 tolB translocation pr 99.6 7.5E-13 1.6E-17 117.9 24.5 206 32-308 182-396 (435)
201 KOG0644 Uncharacterized conser 99.6 3.3E-15 7.2E-20 132.9 8.9 227 5-250 227-456 (1113)
202 KOG1273 WD40 repeat protein [G 99.6 8E-13 1.7E-17 105.8 21.4 233 4-249 59-310 (405)
203 KOG1272 WD40-repeat-containing 99.6 6.9E-15 1.5E-19 123.0 9.8 216 12-244 131-346 (545)
204 KOG0322 G-protein beta subunit 99.6 3E-14 6.6E-19 111.2 12.4 161 9-220 149-322 (323)
205 KOG1310 WD40 repeat protein [G 99.6 2.4E-14 5.3E-19 122.1 11.5 168 45-264 43-231 (758)
206 KOG0771 Prolactin regulatory e 99.6 3.6E-13 7.8E-18 111.6 17.8 138 150-305 148-341 (398)
207 KOG2111 Uncharacterized conser 99.6 1.1E-11 2.4E-16 99.5 25.1 209 12-222 7-257 (346)
208 KOG1188 WD40 repeat protein [G 99.6 5.5E-14 1.2E-18 113.4 11.4 215 5-220 65-345 (376)
209 KOG1517 Guanine nucleotide bin 99.5 2E-12 4.4E-17 118.3 21.9 270 11-301 1065-1364(1387)
210 PRK04922 tolB translocation pr 99.5 1.9E-12 4.2E-17 115.1 21.7 206 32-308 184-398 (433)
211 KOG1240 Protein kinase contain 99.5 2.1E-12 4.5E-17 119.8 21.9 227 5-273 1043-1282(1431)
212 KOG0290 Conserved WD40 repeat- 99.5 8E-13 1.7E-17 104.7 16.1 196 8-211 148-356 (364)
213 TIGR02800 propeller_TolB tol-p 99.5 8.4E-12 1.8E-16 110.8 23.8 192 3-253 182-385 (417)
214 PF02239 Cytochrom_D1: Cytochr 99.5 4E-11 8.8E-16 103.6 26.9 267 14-303 40-330 (369)
215 KOG1524 WD40 repeat-containing 99.5 3.7E-13 8.1E-18 114.7 13.9 215 50-304 12-272 (737)
216 KOG2394 WD40 protein DMR-N9 [G 99.5 1.1E-13 2.5E-18 117.8 10.4 78 10-87 290-367 (636)
217 KOG1517 Guanine nucleotide bin 99.5 2.2E-12 4.7E-17 118.1 18.9 237 12-262 1111-1379(1387)
218 PRK03629 tolB translocation pr 99.5 1.6E-11 3.4E-16 109.0 24.2 205 32-308 179-393 (429)
219 KOG1523 Actin-related protein 99.5 1.1E-12 2.4E-17 105.1 15.1 197 5-254 50-269 (361)
220 PRK02889 tolB translocation pr 99.5 6.2E-12 1.4E-16 111.6 21.4 206 32-308 176-390 (427)
221 KOG4227 WD40 repeat protein [G 99.5 1.6E-12 3.5E-17 107.0 15.4 202 46-303 50-259 (609)
222 PRK04792 tolB translocation pr 99.5 1.4E-11 3E-16 109.8 22.9 224 3-298 210-446 (448)
223 PRK00178 tolB translocation pr 99.5 2E-11 4.3E-16 108.8 23.9 191 3-252 191-393 (430)
224 KOG2394 WD40 protein DMR-N9 [G 99.5 1.6E-12 3.5E-17 110.9 14.9 197 19-242 182-384 (636)
225 PF08662 eIF2A: Eukaryotic tra 99.5 1.1E-11 2.3E-16 97.6 18.3 100 146-252 59-163 (194)
226 KOG2110 Uncharacterized conser 99.5 5.4E-11 1.2E-15 97.3 21.8 192 17-222 53-249 (391)
227 KOG2321 WD40 repeat protein [G 99.4 1.9E-11 4.2E-16 105.2 18.9 239 50-302 49-327 (703)
228 PRK01029 tolB translocation pr 99.4 9.8E-11 2.1E-15 103.6 22.4 197 3-252 177-390 (428)
229 KOG1334 WD40 repeat protein [G 99.4 3.1E-12 6.8E-17 108.0 12.1 243 5-253 137-457 (559)
230 TIGR02800 propeller_TolB tol-p 99.4 1.8E-10 3.8E-15 102.4 24.0 205 32-308 170-384 (417)
231 PRK00178 tolB translocation pr 99.4 3.4E-10 7.3E-15 100.9 23.8 205 33-308 180-393 (430)
232 KOG3881 Uncharacterized conser 99.4 1.4E-10 3E-15 95.6 18.9 221 7-243 102-342 (412)
233 KOG0974 WD-repeat protein WDR6 99.4 9.5E-12 2.1E-16 113.7 13.3 150 16-222 139-289 (967)
234 KOG1587 Cytoplasmic dynein int 99.3 1.2E-10 2.7E-15 103.9 19.0 207 32-299 222-452 (555)
235 KOG2321 WD40 repeat protein [G 99.3 4.8E-11 1E-15 102.9 15.3 193 15-251 138-332 (703)
236 TIGR02658 TTQ_MADH_Hv methylam 99.3 7.7E-09 1.7E-13 87.8 27.8 225 18-252 53-319 (352)
237 KOG1064 RAVE (regulator of V-A 99.3 1.7E-11 3.7E-16 117.6 12.3 221 5-249 2203-2425(2439)
238 PRK04792 tolB translocation pr 99.3 7.5E-10 1.6E-14 98.8 22.3 204 33-308 199-412 (448)
239 PF02239 Cytochrom_D1: Cytochr 99.3 6.7E-09 1.5E-13 89.9 26.5 258 25-305 9-285 (369)
240 KOG4547 WD40 repeat-containing 99.3 1.5E-09 3.3E-14 94.0 20.9 104 143-251 99-208 (541)
241 KOG0974 WD-repeat protein WDR6 99.3 2.6E-11 5.6E-16 110.9 10.2 78 3-82 168-246 (967)
242 KOG1354 Serine/threonine prote 99.2 1.9E-09 4.1E-14 87.8 18.7 247 10-262 25-357 (433)
243 KOG4547 WD40 repeat-containing 99.2 7.2E-10 1.6E-14 96.0 16.4 124 159-299 71-195 (541)
244 PRK01029 tolB translocation pr 99.2 5.1E-09 1.1E-13 92.8 21.5 182 10-244 230-426 (428)
245 KOG2315 Predicted translation 99.2 1.4E-08 3E-13 87.8 23.0 277 11-305 35-371 (566)
246 KOG4190 Uncharacterized conser 99.2 8.1E-11 1.8E-15 101.3 8.7 177 5-230 730-915 (1034)
247 KOG2111 Uncharacterized conser 99.2 2.2E-09 4.7E-14 86.5 15.8 83 2-84 173-258 (346)
248 KOG1272 WD40-repeat-containing 99.1 9.4E-11 2E-15 98.6 7.1 214 56-301 133-347 (545)
249 KOG4497 Uncharacterized conser 99.1 4.5E-10 9.7E-15 90.9 10.4 143 151-307 53-197 (447)
250 TIGR02658 TTQ_MADH_Hv methylam 99.1 1.2E-06 2.5E-11 74.7 31.6 256 32-308 27-318 (352)
251 KOG0309 Conserved WD40 repeat- 99.1 4.8E-10 1E-14 99.6 10.8 238 2-296 58-307 (1081)
252 KOG1334 WD40 repeat protein [G 99.1 5.6E-10 1.2E-14 94.6 10.4 218 3-223 225-468 (559)
253 COG5354 Uncharacterized protei 99.1 1.2E-07 2.7E-12 81.2 24.3 235 9-252 31-335 (561)
254 PF10282 Lactonase: Lactonase, 99.1 1.6E-06 3.5E-11 75.0 31.5 237 12-254 38-313 (345)
255 KOG2139 WD40 repeat protein [G 99.1 6.8E-09 1.5E-13 85.2 15.5 186 54-308 100-300 (445)
256 KOG1240 Protein kinase contain 99.1 8.7E-09 1.9E-13 96.4 18.0 203 41-301 1037-1251(1431)
257 COG4946 Uncharacterized protei 99.1 1.2E-06 2.5E-11 74.9 29.0 108 191-312 359-467 (668)
258 PF00400 WD40: WD domain, G-be 99.1 3.7E-10 8.1E-15 64.2 5.6 38 43-80 2-39 (39)
259 KOG2314 Translation initiation 99.1 7.8E-08 1.7E-12 83.2 21.6 269 12-305 251-554 (698)
260 KOG3881 Uncharacterized conser 99.0 1.1E-07 2.5E-12 78.8 20.5 228 11-251 56-309 (412)
261 COG2706 3-carboxymuconate cycl 99.0 1.4E-06 3.1E-11 71.9 26.6 251 4-304 33-306 (346)
262 KOG2041 WD40 repeat protein [G 99.0 5.7E-08 1.2E-12 86.5 19.4 275 12-306 16-326 (1189)
263 KOG3914 WD repeat protein WDR4 99.0 8.2E-09 1.8E-13 85.7 12.5 85 143-230 148-232 (390)
264 KOG1832 HIV-1 Vpr-binding prot 99.0 1.1E-09 2.5E-14 99.1 7.2 216 5-302 1096-1315(1516)
265 PF10282 Lactonase: Lactonase, 99.0 3.6E-06 7.8E-11 72.8 28.4 208 13-227 89-330 (345)
266 PRK04043 tolB translocation pr 98.9 2E-06 4.3E-11 76.0 26.3 180 12-252 189-387 (419)
267 KOG2315 Predicted translation 98.9 5.2E-07 1.1E-11 78.3 20.1 226 14-253 129-375 (566)
268 KOG1409 Uncharacterized conser 98.9 7E-08 1.5E-12 78.8 13.8 200 11-223 69-272 (404)
269 PF15492 Nbas_N: Neuroblastoma 98.9 2.3E-06 4.9E-11 68.7 21.8 210 16-233 3-271 (282)
270 PRK04043 tolB translocation pr 98.9 2.1E-06 4.6E-11 75.8 23.9 144 152-308 238-387 (419)
271 PF04762 IKI3: IKI3 family; I 98.9 5.8E-06 1.3E-10 79.7 28.3 224 10-245 75-361 (928)
272 KOG1409 Uncharacterized conser 98.9 3.9E-09 8.5E-14 85.9 5.5 80 5-84 192-272 (404)
273 PF00400 WD40: WD domain, G-be 98.8 5.6E-09 1.2E-13 59.2 4.6 35 4-38 5-39 (39)
274 KOG2695 WD40 repeat protein [G 98.8 1.4E-08 3E-13 82.9 7.7 142 10-200 252-401 (425)
275 KOG2314 Translation initiation 98.8 3.9E-06 8.6E-11 73.0 22.5 262 14-309 214-513 (698)
276 KOG0280 Uncharacterized conser 98.8 4.4E-07 9.6E-12 72.7 14.8 109 141-250 160-271 (339)
277 KOG4190 Uncharacterized conser 98.8 3.2E-08 7E-13 85.6 8.9 173 45-268 728-910 (1034)
278 KOG0280 Uncharacterized conser 98.8 3.4E-07 7.5E-12 73.4 13.8 154 14-222 125-285 (339)
279 KOG1064 RAVE (regulator of V-A 98.8 5.3E-08 1.1E-12 94.6 10.9 190 22-230 2180-2375(2439)
280 KOG4532 WD40-like repeat conta 98.8 3.5E-06 7.7E-11 66.9 19.0 200 21-230 83-291 (344)
281 KOG3914 WD repeat protein WDR4 98.8 1.7E-08 3.7E-13 83.8 6.5 88 2-90 143-231 (390)
282 PLN02919 haloacid dehalogenase 98.8 1.9E-06 4.2E-11 84.3 21.3 181 13-225 685-892 (1057)
283 PLN02919 haloacid dehalogenase 98.7 5.9E-05 1.3E-09 74.2 30.6 252 11-267 568-891 (1057)
284 PF08450 SGL: SMP-30/Gluconola 98.7 8.6E-05 1.9E-09 61.0 28.5 225 14-250 3-243 (246)
285 KOG0882 Cyclophilin-related pe 98.7 1.1E-07 2.4E-12 80.4 10.0 215 8-229 7-239 (558)
286 COG5170 CDC55 Serine/threonine 98.7 3.4E-07 7.3E-12 74.0 11.7 245 10-269 26-314 (460)
287 KOG2041 WD40 repeat protein [G 98.7 1.7E-06 3.7E-11 77.5 16.8 237 4-251 65-327 (1189)
288 COG5354 Uncharacterized protei 98.7 2.5E-05 5.3E-10 67.5 22.3 101 144-251 272-378 (561)
289 TIGR03300 assembly_YfgL outer 98.6 4.3E-05 9.3E-10 67.1 24.4 71 21-93 64-134 (377)
290 KOG1645 RING-finger-containing 98.6 4.5E-06 9.8E-11 69.9 15.1 80 5-85 188-269 (463)
291 PF04762 IKI3: IKI3 family; I 98.6 0.00011 2.3E-09 71.2 26.6 258 12-307 23-323 (928)
292 KOG1354 Serine/threonine prote 98.6 2.7E-06 5.8E-11 69.8 13.2 182 6-225 160-363 (433)
293 COG4946 Uncharacterized protei 98.5 8E-05 1.7E-09 64.0 21.6 169 21-248 331-504 (668)
294 KOG2066 Vacuolar assembly/sort 98.5 4.8E-06 1E-10 75.5 14.9 158 11-231 40-197 (846)
295 COG2706 3-carboxymuconate cycl 98.5 0.00021 4.5E-09 59.4 22.3 207 14-226 92-328 (346)
296 KOG2695 WD40 repeat protein [G 98.4 9.7E-07 2.1E-11 72.4 8.2 168 16-233 217-388 (425)
297 KOG1275 PAB-dependent poly(A) 98.4 1.7E-06 3.8E-11 79.3 10.2 144 20-219 185-340 (1118)
298 TIGR03300 assembly_YfgL outer 98.4 0.0002 4.4E-09 62.8 22.4 187 22-231 145-348 (377)
299 PF13360 PQQ_2: PQQ-like domai 98.4 0.00066 1.4E-08 55.3 24.0 218 31-266 2-232 (238)
300 PF07433 DUF1513: Protein of u 98.4 0.00016 3.5E-09 59.9 19.9 183 15-211 55-276 (305)
301 KOG1912 WD40 repeat protein [G 98.4 4.1E-05 8.9E-10 69.5 17.5 211 4-222 49-305 (1062)
302 KOG4532 WD40-like repeat conta 98.3 7E-05 1.5E-09 59.8 15.3 156 9-211 155-322 (344)
303 KOG0309 Conserved WD40 repeat- 98.3 1.9E-06 4E-11 77.4 7.0 172 5-177 109-340 (1081)
304 KOG2114 Vacuolar assembly/sort 98.3 0.00038 8.1E-09 64.1 21.6 203 17-263 30-244 (933)
305 KOG4714 Nucleoporin [Nuclear s 98.2 1.2E-05 2.6E-10 63.7 8.8 72 12-83 181-255 (319)
306 PF11768 DUF3312: Protein of u 98.2 1.1E-05 2.3E-10 71.1 9.1 74 9-84 258-331 (545)
307 PF11768 DUF3312: Protein of u 98.2 0.00014 3.1E-09 64.3 15.5 74 145-223 258-331 (545)
308 COG5170 CDC55 Serine/threonine 98.1 5.2E-05 1.1E-09 61.7 11.4 135 50-230 170-319 (460)
309 PF13360 PQQ_2: PQQ-like domai 98.1 0.0014 3E-08 53.4 20.2 192 20-227 34-236 (238)
310 smart00320 WD40 WD40 repeats. 98.1 1.2E-05 2.5E-10 44.3 5.4 38 43-80 3-40 (40)
311 KOG4714 Nucleoporin [Nuclear s 98.1 3.2E-05 6.9E-10 61.4 9.1 72 149-222 182-255 (319)
312 PF07433 DUF1513: Protein of u 98.1 0.0046 1E-07 51.4 27.2 232 15-252 9-275 (305)
313 KOG0882 Cyclophilin-related pe 98.1 6.1E-05 1.3E-09 64.2 11.1 222 6-230 49-314 (558)
314 KOG2066 Vacuolar assembly/sort 98.0 0.00052 1.1E-08 62.8 16.3 160 5-221 53-233 (846)
315 PF08450 SGL: SMP-30/Gluconola 98.0 0.0063 1.4E-07 49.9 24.4 184 13-209 42-243 (246)
316 KOG1275 PAB-dependent poly(A) 97.9 0.00016 3.4E-09 67.0 12.1 137 157-312 186-336 (1118)
317 KOG1920 IkappaB kinase complex 97.9 0.019 4.1E-07 55.5 25.6 193 52-249 68-306 (1265)
318 PF15492 Nbas_N: Neuroblastoma 97.9 0.0082 1.8E-07 48.7 20.0 168 14-182 47-265 (282)
319 KOG1832 HIV-1 Vpr-binding prot 97.9 2.2E-05 4.7E-10 72.3 5.8 146 44-248 1093-1246(1516)
320 PRK11138 outer membrane biogen 97.9 0.0073 1.6E-07 53.4 21.1 189 22-228 120-319 (394)
321 KOG4640 Anaphase-promoting com 97.9 0.00013 2.8E-09 64.8 9.7 92 10-102 20-114 (665)
322 KOG1645 RING-finger-containing 97.8 0.00084 1.8E-08 56.7 13.8 80 47-179 188-269 (463)
323 COG0823 TolB Periplasmic compo 97.8 0.0033 7E-08 55.7 17.2 188 7-254 189-391 (425)
324 KOG4640 Anaphase-promoting com 97.7 0.00021 4.5E-09 63.6 9.0 92 147-242 21-115 (665)
325 KOG1912 WD40 repeat protein [G 97.7 0.0064 1.4E-07 55.9 18.4 217 13-246 18-286 (1062)
326 smart00320 WD40 WD40 repeats. 97.7 5.5E-05 1.2E-09 41.5 3.8 34 5-38 7-40 (40)
327 KOG1920 IkappaB kinase complex 97.7 0.023 5E-07 54.9 22.5 203 11-222 69-323 (1265)
328 PRK11138 outer membrane biogen 97.6 0.039 8.5E-07 48.8 22.3 187 22-230 160-362 (394)
329 PRK02888 nitrous-oxide reducta 97.6 0.044 9.5E-07 50.2 21.9 53 200-254 285-342 (635)
330 PF00930 DPPIV_N: Dipeptidyl p 97.5 0.055 1.2E-06 47.1 22.7 253 19-308 1-300 (353)
331 PF04841 Vps16_N: Vps16, N-ter 97.5 0.065 1.4E-06 47.5 24.5 213 16-241 34-268 (410)
332 COG0823 TolB Periplasmic compo 97.4 0.015 3.3E-07 51.5 16.2 96 152-251 243-344 (425)
333 PRK02888 nitrous-oxide reducta 97.4 0.029 6.3E-07 51.3 17.7 182 14-210 238-450 (635)
334 PF04053 Coatomer_WDAD: Coatom 97.3 0.033 7.1E-07 49.7 17.0 79 158-243 117-207 (443)
335 PF05096 Glu_cyclase_2: Glutam 97.3 0.076 1.6E-06 43.4 23.1 186 10-252 44-250 (264)
336 PF12894 Apc4_WD40: Anaphase-p 97.2 0.0011 2.4E-08 38.6 5.0 36 7-43 8-43 (47)
337 PF08553 VID27: VID27 cytoplas 97.2 0.011 2.4E-07 55.8 13.6 92 161-254 545-640 (794)
338 PF06977 SdiA-regulated: SdiA- 97.1 0.11 2.4E-06 42.5 21.1 202 5-249 16-238 (248)
339 KOG3621 WD40 repeat-containing 97.1 0.0067 1.5E-07 55.1 10.9 123 9-177 32-155 (726)
340 cd00216 PQQ_DH Dehydrogenases 97.1 0.21 4.6E-06 45.5 23.8 71 22-93 61-139 (488)
341 PF14583 Pectate_lyase22: Olig 97.1 0.16 3.5E-06 43.9 21.5 232 15-252 40-301 (386)
342 KOG2395 Protein involved in va 97.0 0.014 3E-07 51.5 11.9 146 66-220 348-499 (644)
343 PF06433 Me-amine-dh_H: Methyl 97.0 0.16 3.6E-06 43.0 20.0 254 32-305 17-305 (342)
344 KOG3617 WD40 and TPR repeat-co 97.0 0.0079 1.7E-07 55.9 10.6 113 10-176 15-131 (1416)
345 KOG1008 Uncharacterized conser 97.0 0.00075 1.6E-08 60.4 3.8 208 52-265 56-276 (783)
346 PF00930 DPPIV_N: Dipeptidyl p 96.9 0.23 5.1E-06 43.2 24.3 261 10-307 42-346 (353)
347 PF08596 Lgl_C: Lethal giant l 96.9 0.25 5.4E-06 43.5 25.5 242 12-263 3-337 (395)
348 PF08553 VID27: VID27 cytoplas 96.9 0.055 1.2E-06 51.3 15.3 137 30-220 502-646 (794)
349 PF02897 Peptidase_S9_N: Proly 96.8 0.32 6.9E-06 43.3 24.9 229 13-250 126-388 (414)
350 PF04053 Coatomer_WDAD: Coatom 96.8 0.07 1.5E-06 47.6 14.9 133 93-252 32-164 (443)
351 PRK13616 lipoprotein LpqB; Pro 96.6 0.36 7.8E-06 44.9 18.2 189 11-213 350-560 (591)
352 COG3391 Uncharacterized conser 96.4 0.57 1.2E-05 41.2 23.8 219 14-243 77-309 (381)
353 PRK13616 lipoprotein LpqB; Pro 96.3 0.04 8.7E-07 51.1 10.4 109 192-307 350-466 (591)
354 KOG3621 WD40 repeat-containing 96.3 0.038 8.3E-07 50.4 9.6 120 52-222 33-155 (726)
355 KOG3617 WD40 and TPR repeat-co 96.2 0.0053 1.1E-07 57.0 4.1 70 13-82 62-131 (1416)
356 PF10647 Gmad1: Lipoprotein Lp 96.2 0.085 1.8E-06 43.5 10.7 105 193-307 25-130 (253)
357 PF14783 BBS2_Mid: Ciliary BBS 96.2 0.26 5.7E-06 34.5 13.9 83 13-101 2-88 (111)
358 PF12894 Apc4_WD40: Anaphase-p 96.2 0.02 4.3E-07 33.4 4.9 33 191-224 11-43 (47)
359 KOG2079 Vacuolar assembly/sort 96.2 0.02 4.3E-07 54.7 7.5 70 10-81 130-202 (1206)
360 PF03178 CPSF_A: CPSF A subuni 96.1 0.74 1.6E-05 39.4 20.3 194 33-242 3-237 (321)
361 COG3391 Uncharacterized conser 96.0 1 2.2E-05 39.7 25.2 229 13-250 33-270 (381)
362 cd00216 PQQ_DH Dehydrogenases 95.9 1.4 3E-05 40.3 23.4 68 23-92 111-193 (488)
363 COG3386 Gluconolactonase [Carb 95.8 1 2.2E-05 38.2 25.4 225 17-252 31-275 (307)
364 KOG2114 Vacuolar assembly/sort 95.8 1.4 3E-05 41.8 17.2 174 6-230 60-252 (933)
365 PF14783 BBS2_Mid: Ciliary BBS 95.5 0.52 1.1E-05 33.0 13.1 55 159-220 16-70 (111)
366 PF15390 DUF4613: Domain of un 95.5 1.9 4.1E-05 39.3 17.3 150 12-179 21-189 (671)
367 COG3490 Uncharacterized protei 95.4 1.3 2.7E-05 36.7 17.6 56 16-71 119-180 (366)
368 KOG4441 Proteins containing BT 95.3 2.6 5.6E-05 39.3 19.3 224 21-256 284-534 (571)
369 PF08596 Lgl_C: Lethal giant l 95.2 1 2.2E-05 39.8 14.1 155 54-221 3-173 (395)
370 KOG1916 Nuclear protein, conta 95.2 0.0066 1.4E-07 56.8 0.6 67 14-81 187-264 (1283)
371 KOG4649 PQQ (pyrrolo-quinoline 95.2 1.4 3.1E-05 35.8 19.9 69 22-91 63-132 (354)
372 KOG1008 Uncharacterized conser 95.1 0.0087 1.9E-07 53.9 1.2 117 143-262 99-223 (783)
373 KOG2444 WD40 repeat protein [G 95.1 0.046 9.9E-07 43.2 4.8 63 21-83 113-178 (238)
374 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.1 2.8 6.1E-05 38.7 25.3 70 22-92 120-199 (527)
375 PHA02713 hypothetical protein; 94.8 3.3 7.1E-05 38.6 17.1 63 158-222 464-534 (557)
376 PF03178 CPSF_A: CPSF A subuni 94.7 2.4 5.2E-05 36.3 17.2 122 168-304 62-188 (321)
377 KOG4649 PQQ (pyrrolo-quinoline 94.7 2 4.3E-05 35.0 14.8 73 158-233 63-135 (354)
378 KOG2079 Vacuolar assembly/sort 94.3 0.22 4.7E-06 48.1 7.9 73 145-219 129-201 (1206)
379 PF14655 RAB3GAP2_N: Rab3 GTPa 94.2 0.77 1.7E-05 40.6 10.9 86 6-91 303-407 (415)
380 PF12234 Rav1p_C: RAVE protein 94.0 2 4.4E-05 40.1 13.4 96 162-263 45-155 (631)
381 KOG2444 WD40 repeat protein [G 94.0 0.24 5.1E-06 39.3 6.4 63 159-224 115-180 (238)
382 PF12234 Rav1p_C: RAVE protein 93.9 4.5 9.7E-05 37.9 15.4 115 58-175 35-155 (631)
383 PF14870 PSII_BNR: Photosynthe 93.4 4.3 9.3E-05 34.4 17.2 159 9-218 143-301 (302)
384 PF05694 SBP56: 56kDa selenium 93.3 5.4 0.00012 35.3 14.1 135 169-303 158-326 (461)
385 KOG4441 Proteins containing BT 93.3 7 0.00015 36.5 15.9 63 21-85 332-407 (571)
386 PF05694 SBP56: 56kDa selenium 93.2 5.7 0.00012 35.2 16.4 152 19-179 138-345 (461)
387 PF07676 PD40: WD40-like Beta 93.2 0.13 2.8E-06 28.4 3.0 22 288-309 8-29 (39)
388 PF10313 DUF2415: Uncharacteri 92.9 0.56 1.2E-05 26.6 5.1 31 11-41 1-34 (43)
389 PF11715 Nup160: Nucleoporin N 92.9 0.82 1.8E-05 42.4 9.5 73 157-229 157-256 (547)
390 KOG4460 Nuclear pore complex, 92.8 7.2 0.00016 35.3 14.7 32 149-180 168-202 (741)
391 COG3386 Gluconolactonase [Carb 92.8 5.5 0.00012 33.9 15.9 70 13-82 113-193 (307)
392 PF07995 GSDH: Glucose / Sorbo 92.7 5.9 0.00013 34.1 15.0 104 149-255 4-135 (331)
393 TIGR03074 PQQ_membr_DH membran 92.6 11 0.00023 36.6 18.7 71 22-93 260-355 (764)
394 TIGR02276 beta_rpt_yvtn 40-res 92.5 1 2.2E-05 25.0 6.1 39 201-239 1-40 (42)
395 PF15390 DUF4613: Domain of un 92.4 8.7 0.00019 35.3 15.3 116 147-263 57-185 (671)
396 PF06977 SdiA-regulated: SdiA- 92.4 5.3 0.00012 32.8 17.9 119 142-263 17-148 (248)
397 PF04841 Vps16_N: Vps16, N-ter 92.2 8.1 0.00017 34.5 17.2 59 52-110 216-276 (410)
398 COG3204 Uncharacterized protei 92.1 6.2 0.00013 32.9 18.2 190 49-248 82-299 (316)
399 TIGR02604 Piru_Ver_Nterm putat 92.1 6.3 0.00014 34.5 13.4 96 150-249 17-140 (367)
400 KOG1916 Nuclear protein, conta 91.8 0.21 4.5E-06 47.4 4.0 137 156-302 193-346 (1283)
401 KOG2395 Protein involved in va 91.7 2.2 4.8E-05 38.3 9.9 123 162-303 350-486 (644)
402 PF07569 Hira: TUP1-like enhan 91.4 2.1 4.5E-05 34.4 8.9 64 18-82 18-95 (219)
403 PF07569 Hira: TUP1-like enhan 91.4 1.9 4.2E-05 34.6 8.7 67 154-221 18-95 (219)
404 COG5167 VID27 Protein involved 90.9 4.3 9.4E-05 36.5 10.8 60 158-221 573-632 (776)
405 PF10313 DUF2415: Uncharacteri 90.7 1.6 3.4E-05 24.8 5.3 30 193-222 2-34 (43)
406 PF10168 Nup88: Nuclear pore c 90.5 13 0.00027 35.8 14.4 33 146-178 146-181 (717)
407 PF11715 Nup160: Nucleoporin N 90.5 1.5 3.3E-05 40.7 8.5 72 20-91 156-257 (547)
408 KOG2377 Uncharacterized conser 89.0 14 0.0003 32.9 12.2 139 14-165 26-172 (657)
409 PF14655 RAB3GAP2_N: Rab3 GTPa 89.0 5.1 0.00011 35.5 10.0 99 192-302 308-414 (415)
410 PF05096 Glu_cyclase_2: Glutam 88.5 13 0.00028 30.7 22.8 189 53-303 45-245 (264)
411 COG3204 Uncharacterized protei 88.3 9.2 0.0002 32.0 10.2 104 146-251 85-199 (316)
412 PF10168 Nup88: Nuclear pore c 87.7 20 0.00044 34.5 13.6 76 146-222 84-180 (717)
413 PF06433 Me-amine-dh_H: Methyl 87.7 17 0.00037 31.2 25.6 243 15-267 40-323 (342)
414 PF00780 CNH: CNH domain; Int 87.3 16 0.00034 30.3 21.9 206 12-232 37-266 (275)
415 PHA02713 hypothetical protein; 87.2 26 0.00056 32.7 19.2 23 63-85 303-331 (557)
416 KOG2280 Vacuolar assembly/sort 86.3 31 0.00068 32.8 16.5 182 32-230 64-255 (829)
417 PF00780 CNH: CNH domain; Int 85.6 19 0.00042 29.8 24.8 63 20-85 5-67 (275)
418 PF10647 Gmad1: Lipoprotein Lp 85.5 19 0.00041 29.7 16.4 150 12-166 25-185 (253)
419 TIGR03075 PQQ_enz_alc_DH PQQ-d 85.5 31 0.00067 32.0 23.5 74 15-88 238-339 (527)
420 PHA03098 kelch-like protein; P 83.5 37 0.00081 31.4 19.4 64 20-85 293-369 (534)
421 smart00564 PQQ beta-propeller 81.1 4.2 9.2E-05 21.0 3.8 25 24-48 8-32 (33)
422 PF07995 GSDH: Glucose / Sorbo 80.8 36 0.00078 29.4 15.4 59 158-216 271-330 (331)
423 PF07676 PD40: WD40-like Beta 80.6 7.2 0.00016 21.2 5.6 30 50-79 6-38 (39)
424 KOG1897 Damage-specific DNA bi 80.6 63 0.0014 32.0 28.0 74 8-81 528-612 (1096)
425 PF12657 TFIIIC_delta: Transcr 80.5 14 0.00031 28.3 8.0 30 54-83 87-122 (173)
426 PF02897 Peptidase_S9_N: Proly 80.3 42 0.00091 29.8 25.9 124 55-178 126-262 (414)
427 PHA03098 kelch-like protein; P 80.0 51 0.0011 30.5 18.1 65 157-224 389-467 (534)
428 TIGR02276 beta_rpt_yvtn 40-res 80.0 7.9 0.00017 21.2 6.0 31 62-92 1-32 (42)
429 TIGR03074 PQQ_membr_DH membran 79.8 63 0.0014 31.6 13.4 115 158-272 194-352 (764)
430 PF10584 Proteasome_A_N: Prote 79.3 0.7 1.5E-05 22.2 0.2 9 295-303 7-15 (23)
431 PF14781 BBS2_N: Ciliary BBSom 79.1 22 0.00049 26.0 11.8 101 158-265 10-126 (136)
432 TIGR02604 Piru_Ver_Nterm putat 78.4 46 0.001 29.1 16.6 99 148-249 73-200 (367)
433 PF03088 Str_synth: Strictosid 77.7 7.5 0.00016 26.2 4.9 44 208-251 32-75 (89)
434 PRK13684 Ycf48-like protein; P 76.5 50 0.0011 28.5 17.3 158 10-219 172-329 (334)
435 KOG4499 Ca2+-binding protein R 76.5 20 0.00042 29.1 7.5 47 15-61 216-262 (310)
436 PF12657 TFIIIC_delta: Transcr 75.8 34 0.00073 26.3 9.3 31 147-177 86-122 (173)
437 PF14761 HPS3_N: Hermansky-Pud 75.4 14 0.0003 29.4 6.5 47 23-70 29-77 (215)
438 COG3823 Glutamine cyclotransfe 75.2 40 0.00087 26.9 13.7 32 15-47 50-83 (262)
439 KOG3630 Nuclear pore complex, 72.8 28 0.0006 34.9 8.8 62 148-210 200-262 (1405)
440 PF01436 NHL: NHL repeat; Int 72.4 9.2 0.0002 19.2 3.4 25 13-37 4-28 (28)
441 PF01011 PQQ: PQQ enzyme repea 71.6 14 0.00031 20.0 4.7 28 205-232 2-29 (38)
442 PF12768 Rax2: Cortical protei 71.4 61 0.0013 27.3 12.1 82 167-252 15-109 (281)
443 PF14727 PHTB1_N: PTHB1 N-term 70.1 82 0.0018 28.2 16.1 155 61-219 34-202 (418)
444 PHA02790 Kelch-like protein; P 69.9 89 0.0019 28.6 19.0 60 21-82 271-339 (480)
445 KOG2377 Uncharacterized conser 69.8 85 0.0019 28.3 10.6 98 190-302 65-167 (657)
446 KOG4460 Nuclear pore complex, 68.0 1E+02 0.0022 28.4 11.3 27 192-218 104-130 (741)
447 PF08728 CRT10: CRT10; InterP 67.9 25 0.00055 33.5 7.4 79 3-81 156-245 (717)
448 PF14269 Arylsulfotran_2: Aryl 66.9 34 0.00074 29.0 7.6 69 13-81 146-219 (299)
449 COG3823 Glutamine cyclotransfe 66.8 65 0.0014 25.8 13.3 130 164-303 107-243 (262)
450 PF14781 BBS2_N: Ciliary BBSom 64.9 53 0.0011 24.1 9.6 76 14-91 2-90 (136)
451 COG5167 VID27 Protein involved 63.2 14 0.0003 33.5 4.6 61 21-82 572-632 (776)
452 PRK13613 lipoprotein LpqB; Pro 62.3 1.4E+02 0.0031 28.2 12.7 103 193-307 364-473 (599)
453 PLN00033 photosystem II stabil 62.0 1.2E+02 0.0025 27.1 19.1 68 148-218 329-396 (398)
454 KOG1983 Tomosyn and related SN 61.0 2E+02 0.0042 29.3 15.2 26 200-225 243-268 (993)
455 PHA02790 Kelch-like protein; P 59.3 1.4E+02 0.0031 27.3 14.8 64 20-85 317-387 (480)
456 KOG2247 WD40 repeat-containing 57.1 1.9 4.1E-05 38.4 -1.6 133 151-303 39-174 (615)
457 PF13570 PQQ_3: PQQ-like domai 56.3 23 0.00049 19.3 3.3 20 203-222 21-40 (40)
458 COG4590 ABC-type uncharacteriz 56.0 1.3E+02 0.0028 27.2 9.1 63 159-226 329-391 (733)
459 PLN00033 photosystem II stabil 55.9 1.5E+02 0.0033 26.4 13.9 139 149-305 241-387 (398)
460 KOG1900 Nuclear pore complex, 55.2 2.1E+02 0.0045 29.6 11.2 34 189-222 240-273 (1311)
461 PF14761 HPS3_N: Hermansky-Pud 55.1 1.1E+02 0.0024 24.5 12.3 42 66-108 31-74 (215)
462 PRK13615 lipoprotein LpqB; Pro 54.3 1.7E+02 0.0037 27.5 10.2 100 194-307 336-435 (557)
463 TIGR03606 non_repeat_PQQ dehyd 53.9 1.7E+02 0.0038 26.6 14.3 58 6-63 25-89 (454)
464 PF14870 PSII_BNR: Photosynthe 52.6 1.5E+02 0.0032 25.3 27.6 144 143-305 141-292 (302)
465 PF12341 DUF3639: Protein of u 52.3 31 0.00066 17.4 3.5 25 193-219 3-27 (27)
466 TIGR03118 PEPCTERM_chp_1 conse 52.3 1.5E+02 0.0032 25.3 24.4 68 162-231 216-289 (336)
467 KOG3616 Selective LIM binding 51.2 42 0.00092 32.1 5.8 67 11-80 15-81 (1636)
468 PF12768 Rax2: Cortical protei 51.1 54 0.0012 27.6 6.0 53 32-84 16-74 (281)
469 KOG3630 Nuclear pore complex, 49.8 47 0.001 33.4 6.0 59 10-69 198-260 (1405)
470 COG4831 Roadblock/LC7 domain [ 48.9 15 0.00032 24.8 1.9 18 288-305 12-29 (109)
471 PF08728 CRT10: CRT10; InterP 48.8 92 0.002 30.0 7.7 71 148-220 165-245 (717)
472 KOG2247 WD40 repeat-containing 48.7 5.1 0.00011 35.8 -0.3 63 16-79 123-185 (615)
473 PF12566 DUF3748: Protein of u 48.7 13 0.00027 26.2 1.6 12 295-306 74-85 (122)
474 PF14779 BBS1: Ciliary BBSome 47.6 1E+02 0.0022 25.5 6.9 59 159-218 196-255 (257)
475 KOG4499 Ca2+-binding protein R 47.1 1.6E+02 0.0035 24.1 18.9 102 150-251 161-273 (310)
476 PF09826 Beta_propel: Beta pro 45.4 2.6E+02 0.0056 26.1 11.8 136 168-308 304-453 (521)
477 PF14583 Pectate_lyase22: Olig 44.7 2.2E+02 0.0049 25.2 25.4 227 15-253 85-371 (386)
478 PF08801 Nucleoporin_N: Nup133 43.9 2.4E+02 0.0052 25.2 17.0 31 192-222 190-220 (422)
479 KOG2100 Dipeptidyl aminopeptid 43.3 1.8E+02 0.0038 28.6 8.9 53 198-250 103-165 (755)
480 PF10395 Utp8: Utp8 family; I 41.2 3.3E+02 0.0072 26.1 12.8 32 10-41 129-160 (670)
481 PF08954 DUF1900: Domain of un 39.6 1.5E+02 0.0033 21.8 6.5 52 192-243 11-67 (136)
482 COG1520 FOG: WD40-like repeat 38.5 2.3E+02 0.0051 24.7 8.5 73 21-95 111-184 (370)
483 KOG3616 Selective LIM binding 38.1 77 0.0017 30.5 5.3 31 53-83 15-45 (1636)
484 PF05935 Arylsulfotrans: Aryls 36.4 3.3E+02 0.0072 25.0 9.3 75 14-90 193-309 (477)
485 KOG1900 Nuclear pore complex, 36.4 1.1E+02 0.0023 31.5 6.3 69 12-83 180-273 (1311)
486 KOG1520 Predicted alkaloid syn 35.2 3.2E+02 0.0068 24.1 8.7 43 208-251 194-237 (376)
487 PRK13614 lipoprotein LpqB; Pro 35.2 3.9E+02 0.0085 25.2 10.6 107 193-307 344-452 (573)
488 KOG3535 Adaptor protein Disabl 35.1 1.3E+02 0.0027 26.7 5.8 55 25-85 95-154 (557)
489 KOG1896 mRNA cleavage and poly 34.0 5.6E+02 0.012 26.6 11.1 127 167-308 1064-1201(1366)
490 TIGR03054 photo_alph_chp1 puta 33.1 2E+02 0.0043 21.2 6.5 66 160-227 43-119 (135)
491 TIGR02608 delta_60_rpt delta-6 32.4 1.2E+02 0.0025 18.3 5.0 19 12-30 2-20 (55)
492 KOG3611 Semaphorins [Signal tr 31.9 3E+02 0.0066 26.9 8.4 77 2-78 399-489 (737)
493 PF11635 Med16: Mediator compl 31.7 2.3E+02 0.0049 27.9 7.7 70 147-216 260-345 (753)
494 TIGR02171 Fb_sc_TIGR02171 Fibr 29.8 1.4E+02 0.003 29.7 5.7 64 2-65 340-411 (912)
495 TIGR03032 conserved hypothetic 29.8 3.7E+02 0.0079 23.2 7.9 71 172-251 189-259 (335)
496 PF01731 Arylesterase: Arylest 29.3 1.3E+02 0.0028 20.1 4.1 29 193-221 55-84 (86)
497 COG4880 Secreted protein conta 29.0 3.2E+02 0.007 24.6 7.3 64 190-255 426-492 (603)
498 KOG1898 Splicing factor 3b, su 28.3 5.4E+02 0.012 26.3 9.2 100 146-245 537-645 (1205)
499 KOG2280 Vacuolar assembly/sort 27.9 5.8E+02 0.013 24.9 11.2 68 147-218 84-152 (829)
500 PF13449 Phytase-like: Esteras 27.7 3.9E+02 0.0086 22.9 11.2 103 147-250 20-164 (326)
No 1
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=9.5e-55 Score=334.93 Aligned_cols=302 Identities=58% Similarity=0.976 Sum_probs=280.5
Q ss_pred CCcccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399 1 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (313)
Q Consensus 1 ~~~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd 80 (313)
|||+.|+||+.+++.+.|+.+|.+|+||++|.++.||-..+|+.+.+++||+++|||++.+-+.+.++||+.|.++++||
T Consensus 1 mrpi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 1 MRPILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred CCccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCC-CCCCceEEEecCCCCceEEEEEccCCC
Q 021399 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA-DQGGESVLILKGPQGRINRAVWGPLNR 159 (313)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (313)
+++|+++..+....++..+.|..++.++++.++..+.....+.+.++..+.. ..+.++.+.+..+.+.++.+.|.|.++
T Consensus 81 v~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~ 160 (327)
T KOG0643|consen 81 VETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE 160 (327)
T ss_pred cCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC
Confidence 9999999999999999999999999999999988777666677777665442 234566888888899999999999999
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEE
Q 021399 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVT 239 (313)
Q Consensus 160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 239 (313)
.|++|.+||.|.+||.+++..+-.. ...|+..|+.+.+++|..+++++|.|.+-++||.++.++++++..+.|+|+++
T Consensus 161 ~ii~Ghe~G~is~~da~~g~~~v~s--~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aa 238 (327)
T KOG0643|consen 161 TIIAGHEDGSISIYDARTGKELVDS--DEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAA 238 (327)
T ss_pred EEEEecCCCcEEEEEcccCceeeec--hhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccccccee
Confidence 9999999999999999998655432 24588899999999999999999999999999999999999999999999999
Q ss_pred eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~ 304 (313)
++|..+.++.+||.+...|.....|.++||.+||+....++++.++||-+||++|||+||||-++
T Consensus 239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYs 303 (327)
T KOG0643|consen 239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYS 303 (327)
T ss_pred cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999875
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.9e-43 Score=281.28 Aligned_cols=274 Identities=25% Similarity=0.417 Sum_probs=214.9
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
.+.||.++|.|++|+|+|++|+||+.|.++|+||+.+.++..+.++|..-|.|++|+|||+.++||+.||+|++||+.++
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg 189 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTG 189 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eEEEEe--cCCCCeeEEEeecCC-----eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399 85 AQLFTF--NFDSPARSVDFAVGD-----KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (313)
Q Consensus 85 ~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (313)
+++-.. .+...+..+.|.|.. ..++.+ ..++...+|++. .+..++.+.+|..+|+++.|.-+
T Consensus 190 ~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~-----skDg~vrIWd~~------~~~~~~~lsgHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 190 QQIGRALRGHKKWITALAWEPLHLVPPCRRLASS-----SKDGSVRIWDTK------LGTCVRTLSGHTASVTCVRWGGE 258 (480)
T ss_pred CcccccccCcccceeEEeecccccCCCccceecc-----cCCCCEEEEEcc------CceEEEEeccCccceEEEEEcCC
Confidence 876432 234456677776532 111111 123334444432 24466777888888888887754
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecc----------------------------------------------------
Q 021399 158 NRTIISAGEDAIVRIWDTETGKLLKESD---------------------------------------------------- 185 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~---------------------------------------------------- 185 (313)
+ +|.+|+.|++|++|+...+.+++++.
T Consensus 259 g-liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~e 337 (480)
T KOG0271|consen 259 G-LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGE 337 (480)
T ss_pred c-eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcc
Confidence 3 56777777777777766544333221
Q ss_pred ------------------------cccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEe
Q 021399 186 ------------------------KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTM 240 (313)
Q Consensus 186 ------------------------~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~ 240 (313)
..++|...|+.+.||||+.+|||+|.|..|++||.++|+.+.++. +-..+.-++|
T Consensus 338 rlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvaw 417 (480)
T KOG0271|consen 338 RLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAW 417 (480)
T ss_pred eeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEe
Confidence 113677889999999999999999999999999999999999987 5678999999
Q ss_pred ccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~ 304 (313)
+.+..-++. ++.|. .+++|+..+.+....+.||...|+++.|+|||++.+
T Consensus 418 saDsRLlVS-~SkDs-------------TLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 418 SADSRLLVS-GSKDS-------------TLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred ccCccEEEE-cCCCc-------------eEEEEEeeeeeecccCCCCCceEEEEEecCCCceee
Confidence 998765554 44443 246777777777778899999999999999999876
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-41 Score=276.68 Aligned_cols=270 Identities=24% Similarity=0.369 Sum_probs=230.9
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEEEEECCCCe
Q 021399 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLWNVETGA 85 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~vWd~~~~~ 85 (313)
|-+.+|..+.||+|++.|+|||.+|.++||...+...+.+|+||...|.++.|+|. +..++||+.||++++|++++..
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~ 252 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET 252 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc
Confidence 56778999999999999999999999999999999999999999999999999997 5689999999999999998877
Q ss_pred EEEEec-CCCCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399 86 QLFTFN-FDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (313)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t 163 (313)
++..+. +...+..+.|+|.++++...+ +..+ ++|++ .....+.-.+||...|.+++|+|+|..++|
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tW------RlWD~------~tk~ElL~QEGHs~~v~~iaf~~DGSL~~t 320 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTW------RLWDL------ETKSELLLQEGHSKGVFSIAFQPDGSLAAT 320 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccch------hhccc------ccchhhHhhcccccccceeEecCCCceeec
Confidence 666554 345677888999888766543 2222 22332 233455667899999999999999999999
Q ss_pred eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEecc
Q 021399 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP 242 (313)
Q Consensus 164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p 242 (313)
||.|..=+|||++++.++..+. +|...|.+++|+|+|..|||||.|++++|||++.-.++.++.. ...|..|.|+|
T Consensus 321 GGlD~~~RvWDlRtgr~im~L~---gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p 397 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFLA---GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSP 397 (459)
T ss_pred cCccchhheeecccCcEEEEec---ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecc
Confidence 9999999999999999877654 7999999999999999999999999999999999888888764 45688899999
Q ss_pred CCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
..++.+++++.|.. +++|...+..+++.+.||.+.|.+++++|||..++-
T Consensus 398 ~~g~fL~TasyD~t-------------~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t 447 (459)
T KOG0272|consen 398 QEGYFLVTASYDNT-------------VKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIAT 447 (459)
T ss_pred cCCeEEEEcccCcc-------------eeeecCCCcccchhhcCCccceEEEEeccCCceEEE
Confidence 88888888777653 577888888899999999999999999999988764
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.1e-38 Score=244.96 Aligned_cols=272 Identities=20% Similarity=0.337 Sum_probs=229.3
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
++|+||.+.|+++.|++|.++|+|+|.||.+.|||.-+....+.+.-...-|..++|+|.|+.++.||.|+..-||++.+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~ 128 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLST 128 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEeccc
Confidence 59999999999999999999999999999999999998888888887788899999999999999999999999999975
Q ss_pred C--eE---E-EEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 84 G--AQ---L-FTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 84 ~--~~---~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
. +. + ..+ .+..=..++.|.++.+++..+.+.. ..+|++ +.+..+..+.+|.+.|.++.++|
T Consensus 129 ~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~T------CalWDi------e~g~~~~~f~GH~gDV~slsl~p 196 (343)
T KOG0286|consen 129 RDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMT------CALWDI------ETGQQTQVFHGHTGDVMSLSLSP 196 (343)
T ss_pred ccccccceeeeeecCccceeEEEEEcCCCceEecCCCce------EEEEEc------ccceEEEEecCCcccEEEEecCC
Confidence 4 21 1 112 2334456777888777776665533 334444 34678889999999999999999
Q ss_pred -CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC---
Q 021399 157 -LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--- 232 (313)
Q Consensus 157 -~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--- 232 (313)
+++.|++|+-|+.-+|||++.+.+.+.+. +|...|++++|.|+|.-|++||.|+++|+||+|..+.+..+.++
T Consensus 197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF~---ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~ 273 (343)
T KOG0286|consen 197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTFE---GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII 273 (343)
T ss_pred CCCCeEEecccccceeeeeccCcceeEeec---ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc
Confidence 89999999999999999999998888775 79999999999999999999999999999999998888888653
Q ss_pred CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 233 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~ 304 (313)
.++++++|+-.|..++++.. |. ....||...++.+..+.||.++|++|..+|||--++
T Consensus 274 ~gitSv~FS~SGRlLfagy~-d~-------------~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~ 331 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYD-DF-------------TCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVA 331 (343)
T ss_pred CCceeEEEcccccEEEeeec-CC-------------ceeEeeccccceEEEeeccCCeeEEEEECCCCcEEE
Confidence 46899999999988776532 22 235678777888888999999999999999986554
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.8e-38 Score=243.60 Aligned_cols=231 Identities=24% Similarity=0.354 Sum_probs=191.1
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
+.|.||+..|..+..++||++.+|+|.|+++++||+.+++....|.||...|.+++|++|++.++|||+|++|++|++-.
T Consensus 57 r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g 136 (315)
T KOG0279|consen 57 RRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG 136 (315)
T ss_pred eeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC--CCEE
Q 021399 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTI 161 (313)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~i 161 (313)
. +..+. .-.++.+-|.++.|+|. ...|
T Consensus 137 ~-ck~t~--------------------------------------------------~~~~~~~WVscvrfsP~~~~p~I 165 (315)
T KOG0279|consen 137 V-CKYTI--------------------------------------------------HEDSHREWVSCVRFSPNESNPII 165 (315)
T ss_pred c-EEEEE--------------------------------------------------ecCCCcCcEEEEEEcCCCCCcEE
Confidence 3 21111 00112467889999998 6899
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEec
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS 241 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 241 (313)
++++.|+++++||+.+-+....+ .+|++.++.+++||||+.+++|+.||.+.+||++.++++..+.+...|++++|+
T Consensus 166 vs~s~DktvKvWnl~~~~l~~~~---~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fs 242 (315)
T KOG0279|consen 166 VSASWDKTVKVWNLRNCQLRTTF---IGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFS 242 (315)
T ss_pred EEccCCceEEEEccCCcchhhcc---ccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEec
Confidence 99999999999999886655443 479999999999999999999999999999999999999999888899999999
Q ss_pred cCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccc----cc-----ccceeEEEECCCCCee
Q 021399 242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK----GH-----FGPINALAFNPDGKRY 303 (313)
Q Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h-----~~~V~~~~fspdgk~~ 303 (313)
|....++++-+. .+++||.++...+.+++ +- .-.-.+++||+||..+
T Consensus 243 pnrywL~~at~~---------------sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tL 298 (315)
T KOG0279|consen 243 PNRYWLCAATAT---------------SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTL 298 (315)
T ss_pred CCceeEeeccCC---------------ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEE
Confidence 987766655432 24566665555544332 11 2234789999999874
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=5.6e-38 Score=256.07 Aligned_cols=234 Identities=21% Similarity=0.326 Sum_probs=205.3
Q ss_pred ccccccccceeEEEEccC--CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399 4 ILMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~--g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
++|+||+..|.++.|+|. +..|+||+.||++++|++++.+++..+.+|...|..++|+|+|++|+|++.|.+-++||+
T Consensus 211 ~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~ 290 (459)
T KOG0272|consen 211 QTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDL 290 (459)
T ss_pred EEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhccc
Confidence 589999999999999997 679999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399 82 ETGAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 82 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (313)
++++.+... .+...+.++.|.+++.+++... ++...++|++ .++..++.+.+|..+|.++.|+|+|..
T Consensus 291 ~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGG-----lD~~~RvWDl------Rtgr~im~L~gH~k~I~~V~fsPNGy~ 359 (459)
T KOG0272|consen 291 ETKSELLLQEGHSKGVFSIAFQPDGSLAATGG-----LDSLGRVWDL------RTGRCIMFLAGHIKEILSVAFSPNGYH 359 (459)
T ss_pred ccchhhHhhcccccccceeEecCCCceeeccC-----ccchhheeec------ccCcEEEEecccccceeeEeECCCceE
Confidence 998765433 3556788899998887765432 2333344444 457889999999999999999999999
Q ss_pred EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEE
Q 021399 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV 238 (313)
Q Consensus 161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~ 238 (313)
++|||.|++++|||++..+++..+ .+|...|+.|.|+| .|.+|+|+|.|++++||..++..+++++. ++..|.++
T Consensus 360 lATgs~Dnt~kVWDLR~r~~ly~i---pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~ 436 (459)
T KOG0272|consen 360 LATGSSDNTCKVWDLRMRSELYTI---PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISL 436 (459)
T ss_pred EeecCCCCcEEEeeecccccceec---ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEE
Confidence 999999999999999987775544 47999999999998 78899999999999999999999999986 57789999
Q ss_pred EeccCCCEEEEcc
Q 021399 239 TMSPLLDHVVLGG 251 (313)
Q Consensus 239 ~~~p~~~~~~~~~ 251 (313)
..+|+++.++.++
T Consensus 437 Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 437 DISPDSQAIATSS 449 (459)
T ss_pred EeccCCceEEEec
Confidence 9999999887764
No 7
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.3e-36 Score=246.18 Aligned_cols=269 Identities=25% Similarity=0.469 Sum_probs=224.2
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
+.|++|+|+.+|..||+|+.||.+|||+ .+|.++.+|..|+++|+++.|+..|+++++++.|+++.+||..++...+.+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEee
Confidence 5799999999999999999999999998 578888999999999999999999999999999999999999999888877
Q ss_pred cCCCCe-eEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe
Q 021399 91 NFDSPA-RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (313)
Q Consensus 91 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~ 169 (313)
.+.... ..+.|...+.++...++.. +++..+. ...++..+.+|+++|+.+.|+|.+..++++++|++
T Consensus 315 ~~~s~~~lDVdW~~~~~F~ts~td~~------i~V~kv~------~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~T 382 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSNDEFATSSTDGC------IHVCKVG------EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGT 382 (524)
T ss_pred eeccCCccceEEecCceEeecCCCce------EEEEEec------CCCcceeeecccCceEEEEECCCCceEEEecCCCe
Confidence 765544 6788888787776655533 3333332 23467788899999999999999999999999999
Q ss_pred EEEEECCCCceeeecccccCceeceEEEEECCCCC---------EEEEeeCCCcEEEEECCCCcEEEEE-ecCCceeEEE
Q 021399 170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGS---------HFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVT 239 (313)
Q Consensus 170 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~---------~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~ 239 (313)
++||..........+ .+|+..|..+.|+|+|. .+++++.|++|++||+..+.++.++ .+..+|.+++
T Consensus 383 lkiWs~~~~~~~~~l---~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysva 459 (524)
T KOG0273|consen 383 LKIWSMGQSNSVHDL---QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVA 459 (524)
T ss_pred eEeeecCCCcchhhh---hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEE
Confidence 999998776554433 36999999999999765 5999999999999999999999999 5778999999
Q ss_pred eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEEEE
Q 021399 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQI 310 (313)
Q Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~~~ 310 (313)
|+|++.+++.+ ..|+ . +.+|+..+++.++..++ .+.|+.+.||-+|.+++-++...
T Consensus 460 fS~~g~ylAsG-s~dg-~------------V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 460 FSPNGRYLASG-SLDG-C------------VHIWSTKTGKLVKSYQG-TGGIFELCWNAAGDKLGACASDG 515 (524)
T ss_pred ecCCCcEEEec-CCCC-e------------eEeccccchheeEeecC-CCeEEEEEEcCCCCEEEEEecCC
Confidence 99999987654 3332 2 34567777777777665 56699999999999999887654
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-35 Score=230.27 Aligned_cols=233 Identities=26% Similarity=0.407 Sum_probs=195.2
Q ss_pred cccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCC-----CCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399 5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFAD-----NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~-----~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~v 78 (313)
+|++|++.|+.++-.+. .+.|++++.|..+.+|++. .|..++.++||+..|..+..++||++++|+|.|+++++
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrl 89 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRL 89 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEE
Confidence 68999999999999887 4689999999999999765 45678899999999999999999999999999999999
Q ss_pred EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (313)
Q Consensus 79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (313)
||+.+++.. ..+.+|...+.+++++|+.
T Consensus 90 WDl~~g~~t----------------------------------------------------~~f~GH~~dVlsva~s~dn 117 (315)
T KOG0279|consen 90 WDLATGEST----------------------------------------------------RRFVGHTKDVLSVAFSTDN 117 (315)
T ss_pred EEecCCcEE----------------------------------------------------EEEEecCCceEEEEecCCC
Confidence 999876533 3456788889999999999
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC--CCEEEEeeCCCcEEEEECCCCcEEEEEec-CCce
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPV 235 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~ 235 (313)
+.|++|+.|.+|++|++.......... .+|++.|.++.|+|+ ..+|+++|.|+++|+||+++.+...++.. ...+
T Consensus 118 ~qivSGSrDkTiklwnt~g~ck~t~~~--~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v 195 (315)
T KOG0279|consen 118 RQIVSGSRDKTIKLWNTLGVCKYTIHE--DSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYV 195 (315)
T ss_pred ceeecCCCcceeeeeeecccEEEEEec--CCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccE
Confidence 999999999999999987655443322 245899999999998 67999999999999999999998887764 5679
Q ss_pred eEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
+.++++|+|.. +++||.|+ ++.+||...++.+..+ .|..+|.+++|+|+ ++.+|++
T Consensus 196 ~t~~vSpDGsl-casGgkdg-------------~~~LwdL~~~k~lysl-~a~~~v~sl~fspn--rywL~~a 251 (315)
T KOG0279|consen 196 NTVTVSPDGSL-CASGGKDG-------------EAMLWDLNEGKNLYSL-EAFDIVNSLCFSPN--RYWLCAA 251 (315)
T ss_pred EEEEECCCCCE-EecCCCCc-------------eEEEEEccCCceeEec-cCCCeEeeEEecCC--ceeEeec
Confidence 99999999875 44555544 3457777777766555 58999999999998 6777765
No 9
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.5e-35 Score=243.21 Aligned_cols=276 Identities=21% Similarity=0.324 Sum_probs=206.8
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec---CCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR---GHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~---~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
.++.|.+.|+|++|+|||++++|++.||++.+||.++++.+..+. +|.+.|++++|+||++.|+|+|.|.++||||+
T Consensus 185 s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdV 264 (603)
T KOG0318|consen 185 SFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDV 264 (603)
T ss_pred cccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEe
Confidence 578899999999999999999999999999999999999999998 89999999999999999999999999999999
Q ss_pred CCCeEEEEecCCCCeeEE---EeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399 82 ETGAQLFTFNFDSPARSV---DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (313)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (313)
.+.+++.++.....+... .+.+.+.++.++...++.. .+ +.+ ......+.||+..|+.+..+|++
T Consensus 265 s~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~------ln----~~d--~~~~~~i~GHnK~ITaLtv~~d~ 332 (603)
T KOG0318|consen 265 STNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINY------LN----PSD--PSVLKVISGHNKSITALTVSPDG 332 (603)
T ss_pred eccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEE------ec----ccC--CChhheecccccceeEEEEcCCC
Confidence 999998887765442111 1223455555444333221 11 111 23566788999999999999999
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeec-----------cccc------------------------Cc-------------
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKES-----------DKET------------------------GH------------- 190 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~-----------~~~~------------------------~h------------- 190 (313)
.+|.+|+.||.|.-||..++..-+.. .... .+
T Consensus 333 ~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~la 412 (603)
T KOG0318|consen 333 KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLA 412 (603)
T ss_pred CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEE
Confidence 99999999999999997765432110 0000 00
Q ss_pred ------------------------------eeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE---EEEecCCceeE
Q 021399 191 ------------------------------KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI---KTYVTERPVNA 237 (313)
Q Consensus 191 ------------------------------~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~~~ 237 (313)
.....+++++|+++.++.|+.|+.+++|.+...+.. ..+.+..++.+
T Consensus 413 v~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~ 492 (603)
T KOG0318|consen 413 VLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITD 492 (603)
T ss_pred EcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceE
Confidence 011456778999999999999999999998875533 33456778999
Q ss_pred EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
++++|++.+++++-. ..-+..||...+...... .--|.+.|++++||||.+++|-
T Consensus 493 vaySpd~~yla~~Da--~rkvv~yd~~s~~~~~~~-----------w~FHtakI~~~aWsP~n~~vAT 547 (603)
T KOG0318|consen 493 VAYSPDGAYLAAGDA--SRKVVLYDVASREVKTNR-----------WAFHTAKINCVAWSPNNKLVAT 547 (603)
T ss_pred EEECCCCcEEEEecc--CCcEEEEEcccCceecce-----------eeeeeeeEEEEEeCCCceEEEe
Confidence 999999998776532 223444444333322222 2349999999999999998763
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.2e-36 Score=241.56 Aligned_cols=245 Identities=26% Similarity=0.393 Sum_probs=193.8
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEE-EEecCCCCceEEEEECC-----CCCeEEEeeCCCcEEE
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVSR-----DSMTLITGSADQTAKL 78 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~-~~~~~H~~~V~~~~~~~-----~~~~l~s~s~D~~v~v 78 (313)
+.++|..=|.|++|+|||+.||||+.||.|++||.++++++ ..|++|...|++++|.| ..++|+|+|.||+|+|
T Consensus 152 t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrI 231 (480)
T KOG0271|consen 152 TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRI 231 (480)
T ss_pred eecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEE
Confidence 78999999999999999999999999999999999999875 57999999999999975 5679999999999999
Q ss_pred EECCCCeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccce-------------eeeeee-----------CC--
Q 021399 79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIH-------------VKRIAR-----------DP-- 131 (313)
Q Consensus 79 Wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-----------~~-- 131 (313)
||+..+.++..+. +..++.++.|.-.+.+...+.+..+.++.... +..+.. ++
T Consensus 232 Wd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~ 311 (480)
T KOG0271|consen 232 WDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTG 311 (480)
T ss_pred EEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccccccc
Confidence 9999988876654 56677777765444333333332221111000 000000 00
Q ss_pred -----------------------------------------CCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeE
Q 021399 132 -----------------------------------------ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170 (313)
Q Consensus 132 -----------------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i 170 (313)
.....+++..+.+|+..|+.+.|+|++++|++++-|..|
T Consensus 312 ~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSV 391 (480)
T KOG0271|consen 312 RKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSV 391 (480)
T ss_pred ccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccce
Confidence 001122333456889999999999999999999999999
Q ss_pred EEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEE
Q 021399 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVL 249 (313)
Q Consensus 171 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~ 249 (313)
+|||..+|+-+..+. +|-..|.-++|+.|...|+|||.|.++++||+++.+....+. +...+.++.|+|+|..++.
T Consensus 392 kLW~g~tGk~lasfR---GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~s 468 (480)
T KOG0271|consen 392 KLWDGRTGKFLASFR---GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVAS 468 (480)
T ss_pred eeeeCCCcchhhhhh---hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeec
Confidence 999999998876654 799999999999999999999999999999999999988887 5678999999999987665
Q ss_pred ccc
Q 021399 250 GGG 252 (313)
Q Consensus 250 ~~~ 252 (313)
+|.
T Consensus 469 ggk 471 (480)
T KOG0271|consen 469 GGK 471 (480)
T ss_pred CCC
Confidence 543
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.4e-36 Score=262.87 Aligned_cols=239 Identities=24% Similarity=0.392 Sum_probs=199.0
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
+|.||.++|+.++|+|+.++|+|+|.|+++|+|.+.+-..+-.++||..+||.+.|+|-|-+|||||.|++.++|.....
T Consensus 446 ~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 446 TLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred EeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 58999999999999999999999999999999999999988889999999999999999999999999999999986542
Q ss_pred eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
+ +...+.+|.+.+.++.|+|+..+++||
T Consensus 526 ~----------------------------------------------------PlRifaghlsDV~cv~FHPNs~Y~aTG 553 (707)
T KOG0263|consen 526 K----------------------------------------------------PLRIFAGHLSDVDCVSFHPNSNYVATG 553 (707)
T ss_pred C----------------------------------------------------chhhhcccccccceEEECCcccccccC
Confidence 2 334556888999999999999999999
Q ss_pred eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccC
Q 021399 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPL 243 (313)
Q Consensus 165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~ 243 (313)
|.|.++|+||+.++..++.+ .||.+.|.+++|||+|.+|+||+.||.|++||+.+++++.++. +...+.+++|+.+
T Consensus 554 SsD~tVRlWDv~~G~~VRiF---~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~d 630 (707)
T KOG0263|consen 554 SSDRTVRLWDVSTGNSVRIF---TGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRD 630 (707)
T ss_pred CCCceEEEEEcCCCcEEEEe---cCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecC
Confidence 99999999999999988766 4899999999999999999999999999999999999888775 4567999999999
Q ss_pred CCEEEEcccccCceeEeeccCCCcee-----eeee-------ehhhhhhhccccccccceeEEEECCCC
Q 021399 244 LDHVVLGGGQDASAVTTTDHRAGKFE-----AKFF-------DKILQEEIGGVKGHFGPINALAFNPDG 300 (313)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-------~~~~~~~~~~~~~h~~~V~~~~fspdg 300 (313)
+..++++|+ ++.+.+||....... +..- +..+...++.+..-..+|..|.|..-.
T Consensus 631 g~vLasgg~--DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrN 697 (707)
T KOG0263|consen 631 GNVLASGGA--DNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRN 697 (707)
T ss_pred CCEEEecCC--CCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccc
Confidence 998777665 345667775543322 0000 001122334444556788888887655
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.2e-35 Score=255.49 Aligned_cols=231 Identities=26% Similarity=0.447 Sum_probs=200.8
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-------------------------------EEEEecCCCCc
Q 021399 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-------------------------------RLGTYRGHNGA 54 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-------------------------------~~~~~~~H~~~ 54 (313)
...-.+.+.|+.|++|+.+||.|-.|..|++|.+...+ ...++-||.++
T Consensus 374 ~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GP 453 (707)
T KOG0263|consen 374 FHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGP 453 (707)
T ss_pred EEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCc
Confidence 34455679999999999999999999999999877311 23456799999
Q ss_pred eEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCC
Q 021399 55 VWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ 134 (313)
Q Consensus 55 V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (313)
|..++|+|+.++|+|+|.|+++|+|++.+..++
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~----------------------------------------------- 486 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL----------------------------------------------- 486 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeE-----------------------------------------------
Confidence 999999999999999999999999999875432
Q ss_pred CCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCc
Q 021399 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214 (313)
Q Consensus 135 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~ 214 (313)
...+||..+|..+.|+|-|.+|||++.|++-++|......+++.+ .+|...|.|+.|+|+.+++++||.|.+
T Consensus 487 -----V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif---aghlsDV~cv~FHPNs~Y~aTGSsD~t 558 (707)
T KOG0263|consen 487 -----VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF---AGHLSDVDCVSFHPNSNYVATGSSDRT 558 (707)
T ss_pred -----EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh---cccccccceEEECCcccccccCCCCce
Confidence 334578889999999999999999999999999998877776654 489999999999999999999999999
Q ss_pred EEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeE
Q 021399 215 AKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 293 (313)
Q Consensus 215 i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 293 (313)
+|+||..++..++.+. +..++.+++|+|.|.+++.++ .++ .+.+||...++.+..+.+|.+.|++
T Consensus 559 VRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~-ed~-------------~I~iWDl~~~~~v~~l~~Ht~ti~S 624 (707)
T KOG0263|consen 559 VRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD-EDG-------------LIKIWDLANGSLVKQLKGHTGTIYS 624 (707)
T ss_pred EEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc-cCC-------------cEEEEEcCCCcchhhhhcccCceeE
Confidence 9999999999999986 467899999999998876543 332 3678999999999999999999999
Q ss_pred EEECCCCCeeEE
Q 021399 294 LAFNPDGKRYGF 305 (313)
Q Consensus 294 ~~fspdgk~~~~ 305 (313)
+.||.||..||.
T Consensus 625 lsFS~dg~vLas 636 (707)
T KOG0263|consen 625 LSFSRDGNVLAS 636 (707)
T ss_pred EEEecCCCEEEe
Confidence 999999999875
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.9e-35 Score=240.40 Aligned_cols=267 Identities=24% Similarity=0.414 Sum_probs=212.0
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~ 89 (313)
+.+|..++|.|+|+.|++|+..|...+|+...-.....+.+|+.+|.++.|+++++.++||+.+|.||+|++.-......
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~ 175 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII 175 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh
Confidence 45788999999999999999999999998743333334579999999999999999999999999999999865433222
Q ss_pred ecC-CCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399 90 FNF-DSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (313)
Q Consensus 90 ~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d 167 (313)
... ...++.++|+| +.+++.++.+..+. +|+... ...-..+.+|.-.+.++.|+|....++++|.|
T Consensus 176 ~ahh~eaIRdlafSpnDskF~t~SdDg~ik------iWdf~~------~kee~vL~GHgwdVksvdWHP~kgLiasgskD 243 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFSPNDSKFLTCSDDGTIK------IWDFRM------PKEERVLRGHGWDVKSVDWHPTKGLIASGSKD 243 (464)
T ss_pred hHhhhhhhheeccCCCCceeEEecCCCeEE------EEeccC------CchhheeccCCCCcceeccCCccceeEEccCC
Confidence 223 36788999997 55666655554333 333221 11223458899999999999999999999999
Q ss_pred CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCE
Q 021399 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDH 246 (313)
Q Consensus 168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~ 246 (313)
..|++||.+++.++..+. +|+..|+++.|.+++++|+|+|.|..++++|+++.+.+.++. +...+.+++|+|....
T Consensus 244 nlVKlWDprSg~cl~tlh---~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLH---GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNES 320 (464)
T ss_pred ceeEeecCCCcchhhhhh---hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeecccccccc
Confidence 999999999999987664 699999999999999999999999999999999888777776 5678999999999999
Q ss_pred EEEcccccCceeEeeccCCCceeeeeeehhhhhhhcc-ccccccceeEEEECCCCCeeE
Q 021399 247 VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG-VKGHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~~~fspdgk~~~ 304 (313)
++++||.|+..+ +|.....+++.. ..+|.+.||+++|+|=|-+|+
T Consensus 321 lftsgg~Dgsvv-------------h~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~ 366 (464)
T KOG0284|consen 321 LFTSGGSDGSVV-------------HWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILA 366 (464)
T ss_pred ceeeccCCCceE-------------EEeccccccccCCCcccccceeeeeccccceeEe
Confidence 999988876543 233222223222 348999999999999776665
No 14
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.6e-34 Score=230.43 Aligned_cols=230 Identities=22% Similarity=0.353 Sum_probs=202.1
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
+++.||.+=|.|+++.|.+++++||+.|++++|||++++++..++.||-..|..+++|+-..++++++.|+.||.||++.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 58899999999999999999999999999999999999999999999999999999999888999999999999999987
Q ss_pred CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (313)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t 163 (313)
.+.+. ..-||-+.|.++..+|.-..++|
T Consensus 225 nkvIR----------------------------------------------------~YhGHlS~V~~L~lhPTldvl~t 252 (460)
T KOG0285|consen 225 NKVIR----------------------------------------------------HYHGHLSGVYCLDLHPTLDVLVT 252 (460)
T ss_pred hhhHH----------------------------------------------------HhccccceeEEEeccccceeEEe
Confidence 65432 12367778899999999999999
Q ss_pred eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEecc
Q 021399 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP 242 (313)
Q Consensus 164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p 242 (313)
|+.|.++|+||+++...+..+ .||...|..+.+.|....+++||.|++|++||++.++-..++.+ ...+.+++.+|
T Consensus 253 ~grDst~RvWDiRtr~~V~~l---~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP 329 (460)
T KOG0285|consen 253 GGRDSTIRVWDIRTRASVHVL---SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHP 329 (460)
T ss_pred cCCcceEEEeeecccceEEEe---cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCC
Confidence 999999999999987766554 48999999999998888899999999999999999998888764 56799999999
Q ss_pred CCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY 303 (313)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~ 303 (313)
....++ +++.| .++-|+...+..++.+++|++.|++++.+.||=++
T Consensus 330 ~e~~fA-Sas~d--------------nik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~ 375 (460)
T KOG0285|consen 330 KENLFA-SASPD--------------NIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLV 375 (460)
T ss_pred chhhhh-ccCCc--------------cceeccCCccchhhccccccceeeeeeeccCceEE
Confidence 876544 44433 35678888888889999999999999999997654
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.8e-33 Score=240.95 Aligned_cols=244 Identities=21% Similarity=0.359 Sum_probs=193.7
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
-++||...+.|+++||||+++++|+.||+|||||...+.+..+|..|+..|+++.|+..|+.++++|.||+|+.||+...
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY 424 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY 424 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred eEEEEecCCCCe--eEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 85 AQLFTFNFDSPA--RSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 85 ~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
..-.++..+.++ .+++..|.+.++++ ..+.+ .+.+|.+. .++.+-.+.||.++|.+++|+|.+..+
T Consensus 425 rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F-----~IfvWS~q------TGqllDiLsGHEgPVs~l~f~~~~~~L 493 (893)
T KOG0291|consen 425 RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF-----EIFVWSVQ------TGQLLDILSGHEGPVSGLSFSPDGSLL 493 (893)
T ss_pred ceeeeecCCCceeeeEEEEcCCCCEEEeeccceE-----EEEEEEee------cCeeeehhcCCCCcceeeEEccccCeE
Confidence 776666655443 34455553444443 33321 23444443 456777889999999999999999999
Q ss_pred EEeeCCCeEEEEECCCCc-eeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe----------
Q 021399 162 ISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---------- 230 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---------- 230 (313)
++++.|.+||+||+.... ..-++ .+...+.+++|.|+|+.|+++..||.|.+||.+.......+.
T Consensus 494 aS~SWDkTVRiW~if~s~~~vEtl----~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~ 569 (893)
T KOG0291|consen 494 ASGSWDKTVRIWDIFSSSGTVETL----EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRK 569 (893)
T ss_pred EeccccceEEEEEeeccCceeeeE----eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccccc
Confidence 999999999999986542 22222 367789999999999999999999999999988665443221
Q ss_pred ------c-----CCceeEEEeccCCCEEEEcccccCceeEeeccCC
Q 021399 231 ------T-----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA 265 (313)
Q Consensus 231 ------~-----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 265 (313)
. ......++++++|..++++|-+ +.+.+++.+.
T Consensus 570 ~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~s--n~iCiY~v~~ 613 (893)
T KOG0291|consen 570 ETDRITAENSAKGKTFTTICYSADGKCILAGGES--NSICIYDVPE 613 (893)
T ss_pred ccceeehhhcccCCceEEEEEcCCCCEEEecCCc--ccEEEEECch
Confidence 1 1246789999999998887644 4455555543
No 16
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=8.1e-33 Score=245.43 Aligned_cols=237 Identities=28% Similarity=0.451 Sum_probs=197.9
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeC-CCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFA-DNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~-~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
+.+.+|...|..++|+|+|+++++++.|+++||||+ ..+..++++++|...|++++|+|+++++++|+.|++|+|||++
T Consensus 197 ~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~ 276 (456)
T KOG0266|consen 197 RELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR 276 (456)
T ss_pred ccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence 356899999999999999999999999999999999 5668999999999999999999999999999999999999998
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
+++++ ..+++|.+.|..+.|+++++.++
T Consensus 277 ~~~~~----------------------------------------------------~~l~~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 277 TGECV----------------------------------------------------RKLKGHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred CCeEE----------------------------------------------------EeeeccCCceEEEEECCCCCEEE
Confidence 76543 34467888999999999999999
Q ss_pred EeeCCCeEEEEECCCCc--eeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC----cee
Q 021399 163 SAGEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER----PVN 236 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----~~~ 236 (313)
+++.|+.|++||+.++. ++..+....... .++.+.|+|++.++++++.|+.+++||++.+.+..++.... ++.
T Consensus 305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~ 383 (456)
T KOG0266|consen 305 SASYDGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIF 383 (456)
T ss_pred EcCCCccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEe
Confidence 99999999999999988 444444332223 69999999999999999999999999999999888875322 233
Q ss_pred EEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccc-ccceeEEEECCCCCeeEEEE
Q 021399 237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~fspdgk~~~~~~ 307 (313)
...+++.+..++.+ +.|. .+.+||..++..+..+.+| ..+|..++++|...++++..
T Consensus 384 ~~~~~~~~~~i~sg-~~d~-------------~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 384 SPTLSTGGKLIYSG-SEDG-------------SVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred cccccCCCCeEEEE-eCCc-------------eEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecC
Confidence 34445555554443 3222 3567888878888889999 99999999999999998875
No 17
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.5e-32 Score=215.62 Aligned_cols=278 Identities=23% Similarity=0.404 Sum_probs=205.7
Q ss_pred CCcc-cccccccceeEEEEccCCCEEEEeeCCCCeEEEeC-CCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399 1 MRPI-LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFA-DNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (313)
Q Consensus 1 ~~~~-~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~-~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~v 78 (313)
|+|+ .+.||++.|+.+.|+|+|..|+||+.|..|.+|++ .+-+-..++++|.++|..+.|.+|++.++|+|.|.+++.
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRG 116 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEE
Confidence 3555 67889999999999999999999999999999984 445567889999999999999999999999999999999
Q ss_pred EECCCCeEEEEecCCC-CeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 79 WNVETGAQLFTFNFDS-PARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 79 Wd~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
||.++++++....... -...+.... +..++....+ +...+++++.... .+..+ ..+-+++.+.|..
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgsd-----D~t~kl~D~R~k~------~~~t~-~~kyqltAv~f~d 184 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSD-----DGTLKLWDIRKKE------AIKTF-ENKYQLTAVGFKD 184 (338)
T ss_pred EecccceeeehhccccceeeecCccccCCeEEEecCC-----CceEEEEeecccc------hhhcc-ccceeEEEEEecc
Confidence 9999999887665332 233333222 2233222222 2233444432111 11111 1133578889999
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC----cEEEEEec-
Q 021399 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----ELIKTYVT- 231 (313)
Q Consensus 157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~- 231 (313)
++..+.+|+-|+.|++||++....+-.. .||.+.|+.++.+++|.++.+-+.|.++++||++.. .|+..+..
T Consensus 185 ~s~qv~sggIdn~ikvWd~r~~d~~~~l---sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~ 261 (338)
T KOG0265|consen 185 TSDQVISGGIDNDIKVWDLRKNDGLYTL---SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH 261 (338)
T ss_pred cccceeeccccCceeeeccccCcceEEe---ecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence 9999999999999999999877665443 489999999999999999999999999999999864 44555542
Q ss_pred ----CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399 232 ----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 232 ----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~ 307 (313)
+...-.++|+|.+..+-+ |+-+..+++|| ..+...+-++.||.+-|++++|+|..-+++.+-
T Consensus 262 ~hnfeknlL~cswsp~~~~i~a--gs~dr~vyvwd------------~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~ 327 (338)
T KOG0265|consen 262 IHNFEKNLLKCSWSPNGTKITA--GSADRFVYVWD------------TTSRRILYKLPGHYGSVNEVDFHPTEPIILSCS 327 (338)
T ss_pred hhhhhhhcceeeccCCCCcccc--ccccceEEEee------------cccccEEEEcCCcceeEEEeeecCCCcEEEEec
Confidence 223557899998875433 33344555555 444444556789999999999999998887663
No 18
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=7.9e-32 Score=225.04 Aligned_cols=275 Identities=31% Similarity=0.489 Sum_probs=220.0
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
..+++|.++|.+++|+|++++|++++.|+.+++|+..+++....+.+|...+..+.|+|+++.+++++.|+.+++||+.+
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 46789999999999999999999999999999999999988889999999999999999999999999999999999998
Q ss_pred CeEEEEecC-CCCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 84 GAQLFTFNF-DSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
++....+.. ...+..+.+.+...+++... +.. +..+++. .......+..|...+..+.|+|++.++
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------i~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l 150 (289)
T cd00200 83 GECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKT------IKVWDVE------TGKCLTTLRGHTDWVNSVAFSPDGTFV 150 (289)
T ss_pred ccceEEEeccCCcEEEEEEcCCCCEEEEecCCCe------EEEEECC------CcEEEEEeccCCCcEEEEEEcCcCCEE
Confidence 766555543 44677888888766665554 322 2223221 234455566788899999999998888
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE-ecCCceeEEEe
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VTERPVNAVTM 240 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~ 240 (313)
++++.|+.|++||+.+++.+..+. .|...+.+++|+|+++.+++++.|+.+++||+++++.+..+ .+...+.+++|
T Consensus 151 ~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~ 227 (289)
T cd00200 151 ASSSQDGTIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAF 227 (289)
T ss_pred EEEcCCCcEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEE
Confidence 888889999999998777665543 57778999999999999999999999999999998888887 45668999999
Q ss_pred ccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~ 307 (313)
+|++..+ ++++.+ + .+++|+..+++.+..+.+|...|.+++|+|+++.++...
T Consensus 228 ~~~~~~~-~~~~~~-~------------~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 228 SPDGYLL-ASGSED-G------------TIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred cCCCcEE-EEEcCC-C------------cEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEec
Confidence 9985544 443322 2 234556555555566678999999999999998877654
No 19
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.2e-34 Score=230.19 Aligned_cols=247 Identities=23% Similarity=0.353 Sum_probs=210.8
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
-+.||..+|+.+-|+|+-...++++.|.+|++||..+++....++||.++|..++|+..|++++|++.|-.+++||..+.
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~ 182 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF 182 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999997642
Q ss_pred eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
.. .+..+.+|...|.++.|-|.+.+|+++
T Consensus 183 ~~---------------------------------------------------c~ks~~gh~h~vS~V~f~P~gd~ilS~ 211 (406)
T KOG0295|consen 183 FR---------------------------------------------------CIKSLIGHEHGVSSVFFLPLGDHILSC 211 (406)
T ss_pred HH---------------------------------------------------HHHHhcCcccceeeEEEEecCCeeeec
Confidence 10 011223566678888899999999999
Q ss_pred eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccC
Q 021399 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPL 243 (313)
Q Consensus 165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~ 243 (313)
+.|.+|+.||+.++-++.++. +|+..|..++...||..+++++.|.++++|-+.+.+|...+. ++.++.+++|-|.
T Consensus 212 srD~tik~We~~tg~cv~t~~---~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~ 288 (406)
T KOG0295|consen 212 SRDNTIKAWECDTGYCVKTFP---GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPE 288 (406)
T ss_pred ccccceeEEecccceeEEecc---CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEeccc
Confidence 999999999999999887764 799999999999999999999999999999999998877765 5778999999886
Q ss_pred CCEE---EEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399 244 LDHV---VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 244 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~ 307 (313)
..+- -+++..++..+.....|++ .+++||..++.++-.+.||.++|..++|+|.||++..|+
T Consensus 289 ~~~~~i~~at~~~~~~~~l~s~SrDk--tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca 353 (406)
T KOG0295|consen 289 SSYPSISEATGSTNGGQVLGSGSRDK--TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA 353 (406)
T ss_pred ccCcchhhccCCCCCccEEEeecccc--eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe
Confidence 4322 2223333444555555554 478999999999999999999999999999999998876
No 20
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=5.8e-34 Score=218.37 Aligned_cols=275 Identities=31% Similarity=0.606 Sum_probs=228.8
Q ss_pred CcccccccccceeEEEEc---cCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399 2 RPILMKGHERPLTYLKYN---KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (313)
Q Consensus 2 ~~~~l~~h~~~v~~~~fs---~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~v 78 (313)
.|++-.||+.+|..+.|| |+|=+|+|++.|+.--+-+.++|.-+.+|.||.++||+..++.+-...+|++.|=+.|+
T Consensus 6 ~pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakv 85 (334)
T KOG0278|consen 6 TPLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKV 85 (334)
T ss_pred CceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhh
Confidence 488889999999999998 47889999999999999999999999999999999999999988888999999999999
Q ss_pred EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (313)
Q Consensus 79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (313)
||.-++..+..+.+..-+..+.|..+...++..... ...++.++.+ ...+.+.+.+|.+.|..+.|....
T Consensus 86 w~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~e-----kllrvfdln~-----p~App~E~~ghtg~Ir~v~wc~eD 155 (334)
T KOG0278|consen 86 WDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQE-----KLLRVFDLNR-----PKAPPKEISGHTGGIRTVLWCHED 155 (334)
T ss_pred hhhhhhhhhhhhhhhheeeeEEecccchhhhccchH-----HHhhhhhccC-----CCCCchhhcCCCCcceeEEEeccC
Confidence 999999988888888888999998876655443221 1112222211 122445677899999999999999
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEE
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAV 238 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 238 (313)
+.|++..+|++||+||.++++.++.+. .+..|+++..+++|.+| +-..-+.|++||.++..+++.+..+..|.+.
T Consensus 156 ~~iLSSadd~tVRLWD~rTgt~v~sL~----~~s~VtSlEvs~dG~il-Tia~gssV~Fwdaksf~~lKs~k~P~nV~SA 230 (334)
T KOG0278|consen 156 KCILSSADDKTVRLWDHRTGTEVQSLE----FNSPVTSLEVSQDGRIL-TIAYGSSVKFWDAKSFGLLKSYKMPCNVESA 230 (334)
T ss_pred ceEEeeccCCceEEEEeccCcEEEEEe----cCCCCcceeeccCCCEE-EEecCceeEEeccccccceeeccCccccccc
Confidence 999999999999999999999888765 35679999999999855 4455678999999999999999888899999
Q ss_pred EeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccc-cccccceeEEEECCCCCeeEE
Q 021399 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-KGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~~~fspdgk~~~~ 305 (313)
+.+|.. .++++|+.|.. ...||..++..++.+ ++|-+||-|+.|+|||..+|.
T Consensus 231 SL~P~k-~~fVaGged~~-------------~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 231 SLHPKK-EFFVAGGEDFK-------------VYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYAS 284 (334)
T ss_pred cccCCC-ceEEecCcceE-------------EEEEeccCCceeeecccCCCCceEEEEECCCCceeec
Confidence 999998 56777776643 345777788888875 899999999999999998774
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.3e-32 Score=218.72 Aligned_cols=276 Identities=16% Similarity=0.276 Sum_probs=217.1
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
-+++..|+++|++++.+|+.++++||+.|....||+..++....++.+|..+|+++.|+.+|.+|+||+.+|.|+||+..
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~s 136 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVS 136 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 83 TGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 83 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
++...+.+.. -..+--+.|+|...++++.... +.+=.|.+ .+......+.||+.++++=.|.|+|+++
T Consensus 137 tg~~~~~~~~e~~dieWl~WHp~a~illAG~~D-----GsvWmw~i------p~~~~~kv~~Gh~~~ct~G~f~pdGKr~ 205 (399)
T KOG0296|consen 137 TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTD-----GSVWMWQI------PSQALCKVMSGHNSPCTCGEFIPDGKRI 205 (399)
T ss_pred cCceEEEeecccCceEEEEecccccEEEeecCC-----CcEEEEEC------CCcceeeEecCCCCCcccccccCCCceE
Confidence 9988777652 3455666788866555544321 11111222 1224567788999999999999999999
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccC------------------------------------------------ceec
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETG------------------------------------------------HKKT 193 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~------------------------------------------------h~~~ 193 (313)
+++..||+|++|+++++.++.++....+ +...
T Consensus 206 ~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~ 285 (399)
T KOG0296|consen 206 LTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL 285 (399)
T ss_pred EEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhh
Confidence 9999999999999999988766542110 0011
Q ss_pred ---eEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceee
Q 021399 194 ---ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA 270 (313)
Q Consensus 194 ---v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (313)
|-++.++..=...|+|+.||+|.|||+.+..+.....++..|..+-|-+ .+++++++.+. .+
T Consensus 286 ~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g--------------~v 350 (399)
T KOG0296|consen 286 DESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANG--------------KV 350 (399)
T ss_pred hhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCc--------------eE
Confidence 1112233344468899999999999999988877777888899999988 66777665432 34
Q ss_pred eeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399 271 KFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~ 304 (313)
+.||..+++.+..+.||..+|.+++++||.+.+.
T Consensus 351 ~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vv 384 (399)
T KOG0296|consen 351 RQWDARTGQLKFTYTGHQMGILDFALSPQKRLVV 384 (399)
T ss_pred EeeeccccceEEEEecCchheeEEEEcCCCcEEE
Confidence 6677777777788899999999999999988753
No 22
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=3.5e-32 Score=208.43 Aligned_cols=228 Identities=21% Similarity=0.353 Sum_probs=186.3
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
++.+|++.|..+.|..+|+.++|||.||++||||+......+.+ .|..+|+++..+|+...|++|.++|.|++||+.+.
T Consensus 78 t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~ 156 (311)
T KOG0315|consen 78 TFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN 156 (311)
T ss_pred EEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence 78899999999999999999999999999999999886555444 46799999999999889999999999999999887
Q ss_pred eEEEEec--CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 85 AQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 85 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
.+...+. ...++.++.+.+++..+++.+++ +...+|++..+.....-+++..++.|++.+..+.++|++++|+
T Consensus 157 ~c~~~liPe~~~~i~sl~v~~dgsml~a~nnk-----G~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~la 231 (311)
T KOG0315|consen 157 SCTHELIPEDDTSIQSLTVMPDGSMLAAANNK-----GNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLA 231 (311)
T ss_pred ccccccCCCCCcceeeEEEcCCCcEEEEecCC-----ccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEE
Confidence 6554443 34577888888888777766542 2344555554444444567777899999999999999999999
Q ss_pred EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEe
Q 021399 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTM 240 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~ 240 (313)
+++.|.+++||+.+.. ++......+|+..+...+||.||.+|++|+.|+++++||++.++.++.+.. .....|+++
T Consensus 232 t~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 232 TCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred eecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccEEEEe
Confidence 9999999999999876 222223458999999999999999999999999999999999999988864 334445544
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.5e-31 Score=231.30 Aligned_cols=286 Identities=25% Similarity=0.422 Sum_probs=224.4
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE--EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~--~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
++..||.+.|.++.|+.|.++|++||.|..+|||.++.-+- ...+.+|+++|-++-|..+...++|-+.||.+.+|-.
T Consensus 139 r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~ 218 (893)
T KOG0291|consen 139 RTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTC 218 (893)
T ss_pred eeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEe
Confidence 46789999999999999999999999999999998886654 6778999999999999999999999999999999976
Q ss_pred CC-----------------------CeE-----EEEe------cC-CCCeeEEEeecCCeEEEEECC-Cceec---cc--
Q 021399 82 ET-----------------------GAQ-----LFTF------NF-DSPARSVDFAVGDKLAVITTD-PFMEL---NS-- 120 (313)
Q Consensus 82 ~~-----------------------~~~-----~~~~------~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~-- 120 (313)
.. ++. .+.. +. ...+....|+++..++++... +.+.+ ..
T Consensus 219 ~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~ 298 (893)
T KOG0291|consen 219 DLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFN 298 (893)
T ss_pred cCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCce
Confidence 51 111 1110 11 245666677777766665433 21111 00
Q ss_pred cceeeeeeeCCC-----C---------------------CCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEE
Q 021399 121 AIHVKRIARDPA-----D---------------------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174 (313)
Q Consensus 121 ~~~~~~~~~~~~-----~---------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd 174 (313)
.++...+...+. . .+...++..++|...+++++++|+|.+++||++||+|+|||
T Consensus 299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn 378 (893)
T KOG0291|consen 299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN 378 (893)
T ss_pred EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence 011111110000 0 11234556679999999999999999999999999999999
Q ss_pred CCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCc--eeEEEeccCCCEEEEccc
Q 021399 175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP--VNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~ 252 (313)
..++-|+-++. .|...|+++.|+..|+.++|.|.||+||.||+....+.+++..+.+ -.|++..|.|..+++++
T Consensus 379 ~~SgfC~vTFt---eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~- 454 (893)
T KOG0291|consen 379 TQSGFCFVTFT---EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGA- 454 (893)
T ss_pred ccCceEEEEec---cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeec-
Confidence 99998887775 5999999999999999999999999999999999999999987655 56788888888666543
Q ss_pred ccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 253 QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
.| .|+|.+|+.++++.+-.++||.+||.+++|+|+|..+|.
T Consensus 455 ~d------------~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 455 QD------------SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred cc------------eEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEe
Confidence 22 578899999999999999999999999999999998765
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.1e-31 Score=236.42 Aligned_cols=231 Identities=26% Similarity=0.460 Sum_probs=191.9
Q ss_pred ccccc-ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399 5 LMKGH-ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 5 ~l~~h-~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
++.+| ...|.|+.|+++|+.|++++.|+.+++|+..+.+ ...++.+|...|..++|+|+++++++++.|++++|||+
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~ 232 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL 232 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence 34444 7789999999999999999999999999998777 77788999999999999999999999999999999998
Q ss_pred CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
... +..+..+.+|...|++++|+|.++.+
T Consensus 233 ~~~---------------------------------------------------~~~~~~l~gH~~~v~~~~f~p~g~~i 261 (456)
T KOG0266|consen 233 KDD---------------------------------------------------GRNLKTLKGHSTYVTSVAFSPDGNLL 261 (456)
T ss_pred cCC---------------------------------------------------CeEEEEecCCCCceEEEEecCCCCEE
Confidence 432 12345567899999999999999999
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEEec-CC--cee
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE--LIKTYVT-ER--PVN 236 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~-~~--~~~ 236 (313)
++|+.|++|+|||++++++++.+. +|.+.|++++|+++++.|++++.|+.|++||+.++. +..++.. +. ++.
T Consensus 262 ~Sgs~D~tvriWd~~~~~~~~~l~---~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 338 (456)
T KOG0266|consen 262 VSGSDDGTVRIWDVRTGECVRKLK---GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVT 338 (456)
T ss_pred EEecCCCcEEEEeccCCeEEEeee---ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCcee
Confidence 999999999999999988877664 799999999999999999999999999999999999 5566542 22 589
Q ss_pred EEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccc---eeEEEECCCCCee
Q 021399 237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP---INALAFNPDGKRY 303 (313)
Q Consensus 237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---V~~~~fspdgk~~ 303 (313)
.+.|+|++.+++++..+ . .+++||...++......+|... +.+..++++|+.+
T Consensus 339 ~~~fsp~~~~ll~~~~d--~------------~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 394 (456)
T KOG0266|consen 339 SVQFSPNGKYLLSASLD--R------------TLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLI 394 (456)
T ss_pred EEEECCCCcEEEEecCC--C------------eEEEEEccCCcceeeecccCCcceeEecccccCCCCeE
Confidence 99999999998876532 2 2456776666666666777664 4445556677763
No 25
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.7e-32 Score=226.48 Aligned_cols=270 Identities=22% Similarity=0.332 Sum_probs=218.2
Q ss_pred ccccccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCC-CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399 4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~-~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
.++.||++.|.++.|.| .+.+|+|++.|+.|+||++-+ ++++.+|.+|..+|..++|+++|..|+|+|-|+++|+||+
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDt 287 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDT 287 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeecc
Confidence 47899999999999999 899999999999999999876 7899999999999999999999999999999999999999
Q ss_pred CCCeEEEEecCCCCeeEEEeecCC--eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC
Q 021399 82 ETGAQLFTFNFDSPARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (313)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (313)
++|+++..+..+....++.|.|++ .++++..++ .+..|++ .+++.+.....|-+.|..+.|-+.++
T Consensus 288 ETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~------ki~~wDi------Rs~kvvqeYd~hLg~i~~i~F~~~g~ 355 (503)
T KOG0282|consen 288 ETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDK------KIRQWDI------RSGKVVQEYDRHLGAILDITFVDEGR 355 (503)
T ss_pred ccceEEEEEecCCCceeeecCCCCCcEEEEecCCC------cEEEEec------cchHHHHHHHhhhhheeeeEEccCCc
Confidence 999999999999999999999976 333333332 2223332 23344444556778999999999999
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE---EEEe---cCC
Q 021399 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI---KTYV---TER 233 (313)
Q Consensus 160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~---~~~ 233 (313)
++++.++|+.+++|+.....+++-+.. .+.....++..+|++++++.-+.|+.|.++.+...-.. +.+. ..+
T Consensus 356 rFissSDdks~riWe~~~~v~ik~i~~--~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 356 RFISSSDDKSVRIWENRIPVPIKNIAD--PEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred eEeeeccCccEEEEEcCCCccchhhcc--hhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence 999999999999999888777665433 23456788999999999999999999999986532111 1111 233
Q ss_pred ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCC
Q 021399 234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 301 (313)
Q Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk 301 (313)
....+.|+|+|..++.+.++ + ...+||..+.+.+..+++|.+++..+.|+|...
T Consensus 434 ys~~v~fSpDG~~l~SGdsd-G-------------~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 434 YSCQVDFSPDGRTLCSGDSD-G-------------KVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEP 487 (503)
T ss_pred ceeeEEEcCCCCeEEeecCC-c-------------cEEEeechhhhhhhccccCCcceEEEEecCCCc
Confidence 45678899999987765432 2 345788888999999999999999999999843
No 26
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-31 Score=218.30 Aligned_cols=269 Identities=19% Similarity=0.298 Sum_probs=206.0
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc---EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~---~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd 80 (313)
.+|..|++.|+.+.||++|++|||+|.|.+..||.+.... ..+++.+|..+|..+.||||.+++++|+.|..+++||
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwD 297 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWD 297 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeecc
Confidence 4788999999999999999999999999999999876554 4789999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCC--CCeeEEEeecCCeE-EEEECCCceeccccceeeeeeeCCCCCCCceEEEecCC-CCceEEEEEcc
Q 021399 81 VETGAQLFTFNFD--SPARSVDFAVGDKL-AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGP 156 (313)
Q Consensus 81 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~ 156 (313)
+.++.....+... ....++.|.|++.- ++++.+..+.. +++. +......++- ...+.+++..+
T Consensus 298 v~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~------wdlD-------gn~~~~W~gvr~~~v~dlait~ 364 (519)
T KOG0293|consen 298 VDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIM------WDLD-------GNILGNWEGVRDPKVHDLAITY 364 (519)
T ss_pred CCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEE------ecCC-------cchhhcccccccceeEEEEEcC
Confidence 9999887666543 56778888887654 44444422211 1110 0111111221 24688999999
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCcee
Q 021399 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN 236 (313)
Q Consensus 157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 236 (313)
+|+++++.+.|..|++++.++......+ .....|+++..|.|++++++.-.+..+++||++....++.+......+
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e~~~dr~li----se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~ 440 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNREARVDRGLI----SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGH 440 (519)
T ss_pred CCcEEEEEecccceeeechhhhhhhccc----cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccc
Confidence 9999999999999999998875543222 245689999999999999999999999999999888888887655544
Q ss_pred EEEeccCC---CEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399 237 AVTMSPLL---DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302 (313)
Q Consensus 237 ~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~ 302 (313)
.+--+..| +.++++|+.| .. +++|+..+++.+.++.||...|++++|+|...+
T Consensus 441 fiIrSCFgg~~~~fiaSGSED-~k------------vyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~ 496 (519)
T KOG0293|consen 441 FIIRSCFGGGNDKFIASGSED-SK------------VYIWHRISGKLLAVLSGHSKTVNCVSWNPADPE 496 (519)
T ss_pred eEEEeccCCCCcceEEecCCC-ce------------EEEEEccCCceeEeecCCcceeeEEecCCCCHH
Confidence 44444432 2444444444 33 456777778888999999999999999998654
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.5e-30 Score=196.86 Aligned_cols=268 Identities=17% Similarity=0.241 Sum_probs=206.1
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
+.+.....|+.|...||++.|++++. -.||+||+.++. ++.+|++|.+.|.++.|..+|+.++|||.||++||||++
T Consensus 35 Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR 113 (311)
T KOG0315|consen 35 TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLR 113 (311)
T ss_pred EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEecc
Confidence 34444556899999999999998775 678999999775 589999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
...+...+.+..++.++-.+|...-++... .++.+++|++..+.-. ...+....-.|.++...|+|.+++
T Consensus 114 ~~~~qR~~~~~spVn~vvlhpnQteLis~d-----qsg~irvWDl~~~~c~-----~~liPe~~~~i~sl~v~~dgsml~ 183 (311)
T KOG0315|consen 114 SLSCQRNYQHNSPVNTVVLHPNQTELISGD-----QSGNIRVWDLGENSCT-----HELIPEDDTSIQSLTVMPDGSMLA 183 (311)
T ss_pred CcccchhccCCCCcceEEecCCcceEEeec-----CCCcEEEEEccCCccc-----cccCCCCCcceeeEEEcCCCcEEE
Confidence 977777778888998888887544333222 2344566665432110 111122335688899999999999
Q ss_pred EeeCCCeEEEEECCCCce---eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC-cEEEEEecCCc-eeE
Q 021399 163 SAGEDAIVRIWDTETGKL---LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYVTERP-VNA 237 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~-~~~ 237 (313)
.+...|..++|++..... +..+.+...|+..+..+.+|||+++||++|.|.+++||+.++. +....+...+. +-.
T Consensus 184 a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWd 263 (311)
T KOG0315|consen 184 AANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWD 263 (311)
T ss_pred EecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEe
Confidence 999999999999866443 2223344578999999999999999999999999999999987 44344443333 456
Q ss_pred EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEEC
Q 021399 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 297 (313)
Q Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fs 297 (313)
++|+.++.++++++.+ . ..++||...++.+....+|..+-.|++.+
T Consensus 264 c~FS~dg~YlvTassd-~-------------~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 264 CAFSADGEYLVTASSD-H-------------TARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eeeccCccEEEecCCC-C-------------ceeecccccCceeeecCCcccccEEEEee
Confidence 8899999998887643 2 35788888888888888999888888764
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=2.4e-29 Score=194.98 Aligned_cols=272 Identities=21% Similarity=0.329 Sum_probs=197.5
Q ss_pred cccccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCC---cEEEEe-cCCCCceEEEEECCCCCeEEEeeCCCcEE
Q 021399 3 PILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNG---ERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAK 77 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~---~~~~~~-~~H~~~V~~~~~~~~~~~l~s~s~D~~v~ 77 (313)
.+.+.+|++.+..++|+|- |..|+|||.|+.||||+...+ .+...+ .+|+..|.+++|+|.|++|++||-|.++-
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~ 86 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV 86 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence 4678999999999999998 889999999999999998743 344444 46999999999999999999999999999
Q ss_pred EEECCCCe--EEEEec-CCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399 78 LWNVETGA--QLFTFN-FDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (313)
Q Consensus 78 vWd~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (313)
||.-..++ ++-++. +...+.++.|++.+.+++.. .++.. =++.+. .+..-+...+++.|...|..+.
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSV------WiWe~d---eddEfec~aVL~~HtqDVK~V~ 157 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSV------WIWEID---EDDEFECIAVLQEHTQDVKHVI 157 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeE------EEEEec---CCCcEEEEeeeccccccccEEE
Confidence 99876554 443443 56788999999866555443 33211 111111 2233456778899999999999
Q ss_pred EccCCCEEEEeeCCCeEEEEECCCC---ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 154 WGPLNRTIISAGEDAIVRIWDTETG---KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 154 ~~~~~~~i~t~~~d~~i~lwd~~~~---~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
|+|....+++++.|.+|++|+-... .+.+++ .+|...|.+++|++.|..+++++.|++++||-..+.-. ..
T Consensus 158 WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl---~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~---~~ 231 (312)
T KOG0645|consen 158 WHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTL---DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS---GM 231 (312)
T ss_pred EcCCcceeEEeccCCeEEEEeecCCCCeeEEEEe---cCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc---hh
Confidence 9999999999999999999987633 334444 47888999999999999999999999999998653221 13
Q ss_pred cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh-hccccccccceeEEEECCC
Q 021399 231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE-IGGVKGHFGPINALAFNPD 299 (313)
Q Consensus 231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~~~fspd 299 (313)
+.+++..++|. .+.++.+||++...+ +..... -+..+-+. ...-.+|.-.|++++|+|.
T Consensus 232 ~sr~~Y~v~W~--~~~IaS~ggD~~i~l--f~~s~~------~d~p~~~l~~~~~~aHe~dVNsV~w~p~ 291 (312)
T KOG0645|consen 232 HSRALYDVPWD--NGVIASGGGDDAIRL--FKESDS------PDEPSWNLLAKKEGAHEVDVNSVQWNPK 291 (312)
T ss_pred cccceEeeeec--ccceEeccCCCEEEE--EEecCC------CCCchHHHHHhhhcccccccceEEEcCC
Confidence 45678888887 234444444433222 111110 00111111 2234689999999999994
No 29
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.4e-30 Score=196.92 Aligned_cols=268 Identities=22% Similarity=0.371 Sum_probs=209.1
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
.+|..|.++|..++|+-||++.++++.|++||+|+...+.+++++.+|..+|..++.+.|+..|++||.|+.+.+||+++
T Consensus 11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
++.+..+. +...++.+.|.....+++... ++..++.|+- ...+.+++..+..-...|.++... +..|+
T Consensus 91 Gkv~Rr~rgH~aqVNtV~fNeesSVv~Sgs-----fD~s~r~wDC----RS~s~ePiQildea~D~V~Si~v~--~heIv 159 (307)
T KOG0316|consen 91 GKVDRRFRGHLAQVNTVRFNEESSVVASGS-----FDSSVRLWDC----RSRSFEPIQILDEAKDGVSSIDVA--EHEIV 159 (307)
T ss_pred CeeeeecccccceeeEEEecCcceEEEecc-----ccceeEEEEc----ccCCCCccchhhhhcCceeEEEec--ccEEE
Confidence 99988875 456788888887766655432 2233333331 122345555555555566666655 35699
Q ss_pred EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCc---eeEEE
Q 021399 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP---VNAVT 239 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~ 239 (313)
.|+.||++|.||++.+++.... ...+|++++|++|+++.+.++.|+++++.|-++++++..+..... -..++
T Consensus 160 aGS~DGtvRtydiR~G~l~sDy-----~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTLSSDY-----FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred eeccCCcEEEEEeecceeehhh-----cCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence 9999999999999999876543 345899999999999999999999999999999999988764321 22234
Q ss_pred eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccc-eeEEEECCCCC
Q 021399 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP-INALAFNPDGK 301 (313)
Q Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~~~fspdgk 301 (313)
++.. +..+++|+.|+ . +.+||+...+.+-++..|..+ |.+++++|.-.
T Consensus 235 l~qs-dthV~sgSEDG-~------------Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~ 283 (307)
T KOG0316|consen 235 LNQS-DTHVFSGSEDG-K------------VYFWDLVDETQISKLSVVSTVIVTDLSCHPTMD 283 (307)
T ss_pred eccc-ceeEEeccCCc-e------------EEEEEeccceeeeeeccCCceeEEeeecccCcc
Confidence 4333 34455666554 2 346777667777778888888 89999999743
No 30
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=2.5e-30 Score=199.49 Aligned_cols=275 Identities=17% Similarity=0.246 Sum_probs=207.2
Q ss_pred CcccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE--EecCCCCceEEEEECCC-CCeEEEeeCCCcEEE
Q 021399 2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG--TYRGHNGAVWCCDVSRD-SMTLITGSADQTAKL 78 (313)
Q Consensus 2 ~~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~v 78 (313)
..+.+++|.+.|.+++|+.+|..|++|+.|+++++|+++..+... ..++|.+.|-.++|+|. ..+|++++.|.+|++
T Consensus 12 ~~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 12 KRRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI 91 (313)
T ss_pred hhHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence 346789999999999999999999999999999999998775543 45789999999999874 469999999999999
Q ss_pred EECCCCeEEEEecCCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (313)
Q Consensus 79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (313)
||+++++++...........+.++|++..+++. .+..... .+... ..++.-+--.-.++.+.|+..
T Consensus 92 wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~------id~r~-------~~~~~~~~~~~e~ne~~w~~~ 158 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITF------IDART-------YKIVNEEQFKFEVNEISWNNS 158 (313)
T ss_pred EEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEE------EEecc-------cceeehhcccceeeeeeecCC
Confidence 999999998887777777778888865554443 3322111 11000 000100111224667888877
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCcee
Q 021399 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVN 236 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~ 236 (313)
+..|+-...-|+|.|-....-+++..+ ..|.....|+.|+|+|+++|+|+.|-.+.+||++...|++.+. .+-+|+
T Consensus 159 nd~Fflt~GlG~v~ILsypsLkpv~si---~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVR 235 (313)
T KOG1407|consen 159 NDLFFLTNGLGCVEILSYPSLKPVQSI---KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVR 235 (313)
T ss_pred CCEEEEecCCceEEEEecccccccccc---ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceE
Confidence 777766666799999887655555444 4799999999999999999999999999999999999999986 577999
Q ss_pred EEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399 237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~ 307 (313)
.++|+-++.+++.+ + .+..+-+.+ .+++..+++++ |.++.+.+||+|.--.|||-.
T Consensus 236 TlSFS~dg~~lASa-S-EDh~IDIA~------------vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~ 291 (313)
T KOG1407|consen 236 TLSFSHDGRMLASA-S-EDHFIDIAE------------VETGDRVWEIP-CEGPTFTVAWHPKRPLLAYAC 291 (313)
T ss_pred EEEeccCcceeecc-C-ccceEEeEe------------cccCCeEEEee-ccCCceeEEecCCCceeeEEe
Confidence 99999999876543 3 334433333 34455555554 689999999999999999853
No 31
>PTZ00421 coronin; Provisional
Probab=99.98 E-value=5.4e-30 Score=226.99 Aligned_cols=207 Identities=18% Similarity=0.303 Sum_probs=161.9
Q ss_pred cccccccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCC-------cEEEEecCCCCceEEEEECCCC-CeEEEeeCC
Q 021399 3 PILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDS-MTLITGSAD 73 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D 73 (313)
|.++.||.+.|.+++|+| ++++|++|+.|++|++||+.++ +.+.++.+|...|.+++|+|++ ++|+||+.|
T Consensus 68 ~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D 147 (493)
T PTZ00421 68 PPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD 147 (493)
T ss_pred CceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC
Confidence 457899999999999999 8899999999999999998765 3467899999999999999985 699999999
Q ss_pred CcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399 74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (313)
Q Consensus 74 ~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (313)
++|+|||+++++.+. .+.+|...|.++.
T Consensus 148 gtVrIWDl~tg~~~~----------------------------------------------------~l~~h~~~V~sla 175 (493)
T PTZ00421 148 MVVNVWDVERGKAVE----------------------------------------------------VIKCHSDQITSLE 175 (493)
T ss_pred CEEEEEECCCCeEEE----------------------------------------------------EEcCCCCceEEEE
Confidence 999999998764321 2345677899999
Q ss_pred EccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceec-eEEEEECCCCCEEEEee----CCCcEEEEECCCCc-EEE
Q 021399 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT-ITSLAKAADGSHFLTGS----LDKSAKLWDARTLE-LIK 227 (313)
Q Consensus 154 ~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~s----~dg~i~iwd~~~~~-~~~ 227 (313)
|+|++..|++++.|+.|++||+++++.+..+. +|... ...+.|.+++..+++++ .|++|++||+++.. ++.
T Consensus 176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~---~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~ 252 (493)
T PTZ00421 176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE---AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYS 252 (493)
T ss_pred EECCCCEEEEecCCCEEEEEECCCCcEEEEEe---cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCcee
Confidence 99999999999999999999999988766553 45543 44677888888888765 47999999998754 443
Q ss_pred EEe--cCCceeEEEeccCCCEEEEcccccCceeEeeccCC
Q 021399 228 TYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA 265 (313)
Q Consensus 228 ~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 265 (313)
... ....+....|+|+++.+++++..| ..+..||.+.
T Consensus 253 ~~~~d~~~~~~~~~~d~d~~~L~lggkgD-g~Iriwdl~~ 291 (493)
T PTZ00421 253 TVDLDQSSALFIPFFDEDTNLLYIGSKGE-GNIRCFELMN 291 (493)
T ss_pred EeccCCCCceEEEEEcCCCCEEEEEEeCC-CeEEEEEeeC
Confidence 332 223355567899998877765333 3444455443
No 32
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-30 Score=208.83 Aligned_cols=233 Identities=23% Similarity=0.358 Sum_probs=188.7
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC-CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~-~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
..|+||+++|..++|+..|++|+++|.|-.+++||.++ .++++.+.+|+..|.++.|-|.|..++|++.|.+||.|++.
T Consensus 144 ~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~ 223 (406)
T KOG0295|consen 144 RSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECD 223 (406)
T ss_pred hhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecc
Confidence 46899999999999999999999999999999999987 56788899999999999999999999999999999999999
Q ss_pred CCeEEEEecCCC-CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC----
Q 021399 83 TGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL---- 157 (313)
Q Consensus 83 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---- 157 (313)
++-++.++...+ =++.+....++.+.+.... +..+++|-+.. .+....+.+|+.++-++.|-|.
T Consensus 224 tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~-----dqtl~vW~~~t------~~~k~~lR~hEh~vEci~wap~~~~~ 292 (406)
T KOG0295|consen 224 TGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN-----DQTLRVWVVAT------KQCKAELREHEHPVECIAWAPESSYP 292 (406)
T ss_pred cceeEEeccCchHhEEEEEecCCeeEEEecCC-----CceEEEEEecc------chhhhhhhccccceEEEEecccccCc
Confidence 999988775432 3455555555554443221 22334443322 2223445667777777776543
Q ss_pred -----------CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE
Q 021399 158 -----------NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226 (313)
Q Consensus 158 -----------~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 226 (313)
+.++++++.|++|++||+.++.++.++. +|...|+.++|+|.|+||+|+..|+++++||+++++|.
T Consensus 293 ~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~---ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm 369 (406)
T KOG0295|consen 293 SISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV---GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM 369 (406)
T ss_pred chhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe---cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee
Confidence 2488999999999999999998887764 79999999999999999999999999999999999999
Q ss_pred EEEe-cCCceeEEEeccCCCEEEEc
Q 021399 227 KTYV-TERPVNAVTMSPLLDHVVLG 250 (313)
Q Consensus 227 ~~~~-~~~~~~~~~~~p~~~~~~~~ 250 (313)
.++. ++.-+.++.|+-...+++.|
T Consensus 370 k~~~ah~hfvt~lDfh~~~p~VvTG 394 (406)
T KOG0295|consen 370 KTLEAHEHFVTSLDFHKTAPYVVTG 394 (406)
T ss_pred eccCCCcceeEEEecCCCCceEEec
Confidence 9886 45678999999888876654
No 33
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=9.2e-30 Score=199.30 Aligned_cols=193 Identities=24% Similarity=0.406 Sum_probs=172.0
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~ 82 (313)
+.|.+|++.+.|+.|-+ ..+|+|+|.|.+.-+||++++..+..|.||.+.|.+++++| +++.|+||+.|++.++||++
T Consensus 139 r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R 217 (343)
T KOG0286|consen 139 RELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVR 217 (343)
T ss_pred eeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeecc
Confidence 36999999999999987 56889999999999999999999999999999999999999 89999999999999999999
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
++.+++ .+.+|.+.|+.+.|.|+|..|+
T Consensus 218 ~~~c~q----------------------------------------------------tF~ghesDINsv~ffP~G~afa 245 (343)
T KOG0286|consen 218 SGQCVQ----------------------------------------------------TFEGHESDINSVRFFPSGDAFA 245 (343)
T ss_pred CcceeE----------------------------------------------------eecccccccceEEEccCCCeee
Confidence 875543 3467888999999999999999
Q ss_pred EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEec
Q 021399 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMS 241 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 241 (313)
+|++|++.|+||++..+.+..+. .......|++++||..|.+|++|..|.++.+||.-.++.+..+. ++..|.++..+
T Consensus 246 tGSDD~tcRlyDlRaD~~~a~ys-~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s 324 (343)
T KOG0286|consen 246 TGSDDATCRLYDLRADQELAVYS-HDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS 324 (343)
T ss_pred ecCCCceeEEEeecCCcEEeeec-cCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC
Confidence 99999999999999887776654 33456789999999999999999999999999988888887775 57789999999
Q ss_pred cCCCEEEEc
Q 021399 242 PLLDHVVLG 250 (313)
Q Consensus 242 p~~~~~~~~ 250 (313)
|+|-.++.+
T Consensus 325 ~DG~av~Tg 333 (343)
T KOG0286|consen 325 PDGMAVATG 333 (343)
T ss_pred CCCcEEEec
Confidence 998766554
No 34
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2.8e-30 Score=203.94 Aligned_cols=283 Identities=19% Similarity=0.314 Sum_probs=211.0
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC------------C------cEEEEecCCCCceEEEEECCCC
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------------G------ERLGTYRGHNGAVWCCDVSRDS 64 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~------------~------~~~~~~~~H~~~V~~~~~~~~~ 64 (313)
...|..|+.++.+.+|+|||.++++||.|..|+|.|++. + -++.+|-.|..+|+++.|+|..
T Consensus 105 t~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre 184 (430)
T KOG0640|consen 105 TKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE 184 (430)
T ss_pred eEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence 357889999999999999999999999999999999871 1 1467888999999999999999
Q ss_pred CeEEEeeCCCcEEEEECCCCeEE---EEecCCCCeeEEEeecCCeEEEEECC-CceeccccceeeeeeeCCCCCCCceEE
Q 021399 65 MTLITGSADQTAKLWNVETGAQL---FTFNFDSPARSVDFAVGDKLAVITTD-PFMELNSAIHVKRIARDPADQGGESVL 140 (313)
Q Consensus 65 ~~l~s~s~D~~v~vWd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (313)
..|+||+.|++||++|....... ..+.-..++.++.|+|.+.++++.++ +.. +++++.....- -...
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~------rlYdv~T~Qcf---vsan 255 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTL------RLYDVNTYQCF---VSAN 255 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCce------eEEeccceeEe---eecC
Confidence 99999999999999998643222 12223468899999998877777665 322 23332211000 0000
Q ss_pred EecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCc-eeceEEEEECCCCCEEEEeeCCCcEEEEE
Q 021399 141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH-KKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (313)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~dg~i~iwd 219 (313)
.-..|.+.|+++.+++.++..+|++.||.|+|||--+++++.++.. .| ...|++..|..+|++|++.+.|..+++|.
T Consensus 256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~--AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGN--AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWE 333 (430)
T ss_pred cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHh--hcCCceeeeEEEccCCeEEeecCCcceeeeee
Confidence 1235788999999999999999999999999999888888877654 34 45789999999999999999999999999
Q ss_pred CCCCcEEEEEecCC------ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeE
Q 021399 220 ARTLELIKTYVTER------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 293 (313)
Q Consensus 220 ~~~~~~~~~~~~~~------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 293 (313)
+.++.++.++...+ .-.-..|+-..++++. -..-.+.+..||.|...- ..+| -.+|++++-.
T Consensus 334 i~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~-pDEas~slcsWdaRtadr-~~l~----------slgHn~a~R~ 401 (430)
T KOG0640|consen 334 ISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLF-PDEASNSLCSWDARTADR-VALL----------SLGHNGAVRW 401 (430)
T ss_pred ecCCceEEEEecCCcccchhhhhhhhhcCccceEEc-cccccCceeeccccchhh-hhhc----------ccCCCCCceE
Confidence 99999999987532 1223456666666553 222234466666654321 1111 2489999999
Q ss_pred EEECCCCCeeEEEEEEE
Q 021399 294 LAFNPDGKRYGFLLLQI 310 (313)
Q Consensus 294 ~~fspdgk~~~~~~~~~ 310 (313)
+.-||. .-|||-|..
T Consensus 402 i~HSP~--~p~FmTcsd 416 (430)
T KOG0640|consen 402 IVHSPV--EPAFMTCSD 416 (430)
T ss_pred EEeCCC--CCceeeecc
Confidence 999998 467777643
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=5.9e-32 Score=216.35 Aligned_cols=252 Identities=24% Similarity=0.427 Sum_probs=188.3
Q ss_pred cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (313)
Q Consensus 9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~ 88 (313)
-.++|+|+.| |.+.++||..|.+|+|||.++...++.+.||.++|.|+.|. .+.++|||+|.+|+|||..+++++.
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~ 271 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLN 271 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhh
Confidence 3567999998 46799999999999999999999999999999999999875 5699999999999999999999876
Q ss_pred EecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399 89 TFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (313)
Q Consensus 89 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d 167 (313)
++.+ ...+..+.|..+ -++..+. +..+.+|+..... ......++.||...++.+.|+. ++|++++.|
T Consensus 272 tlihHceaVLhlrf~ng-~mvtcSk------DrsiaVWdm~sps---~it~rrVLvGHrAaVNvVdfd~--kyIVsASgD 339 (499)
T KOG0281|consen 272 TLIHHCEAVLHLRFSNG-YMVTCSK------DRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDFDD--KYIVSASGD 339 (499)
T ss_pred HHhhhcceeEEEEEeCC-EEEEecC------CceeEEEeccCch---HHHHHHHHhhhhhheeeecccc--ceEEEecCC
Confidence 5533 233444444332 2222221 2223344432211 0112235678999999998875 599999999
Q ss_pred CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCE
Q 021399 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDH 246 (313)
Q Consensus 168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~ 246 (313)
.+|++|++.+...++++. +|+..|-|+.+ .+.+++|||+|.+|++||++.|.|++.+. ++..+.++-|.. -
T Consensus 340 RTikvW~~st~efvRtl~---gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd~---k 411 (499)
T KOG0281|consen 340 RTIKVWSTSTCEFVRTLN---GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN---K 411 (499)
T ss_pred ceEEEEeccceeeehhhh---cccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeecC---c
Confidence 999999999988887764 78888888764 68999999999999999999999999986 456789998874 3
Q ss_pred EEEcccccCceeEeeccCCCceeeeeeehhh---------hhhhccccccccceeEEEEC
Q 021399 247 VVLGGGQDASAVTTTDHRAGKFEAKFFDKIL---------QEEIGGVKGHFGPINALAFN 297 (313)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~h~~~V~~~~fs 297 (313)
-+++|+.|+. +++||..+ .-++-.+.-|+++|..+.|.
T Consensus 412 rIVSGaYDGk-------------ikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD 458 (499)
T KOG0281|consen 412 RIVSGAYDGK-------------IKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD 458 (499)
T ss_pred eeeeccccce-------------EEEEecccccCCcccccchHHHhhhhccceeEEEeec
Confidence 3566666542 44555432 12445667899999999984
No 36
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.4e-30 Score=224.63 Aligned_cols=241 Identities=22% Similarity=0.316 Sum_probs=199.9
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc----EEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEE
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKL 78 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~----~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~v 78 (313)
.++.||++.|.++....+|.+|+|||.|.++++|.++++. ++....+|++.|.+++++..+ ..|+|+|.|.++|+
T Consensus 359 ~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~ 438 (775)
T KOG0319|consen 359 QIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKL 438 (775)
T ss_pred EEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEE
Confidence 3789999999999866788999999999999999875443 356678999999999997655 48999999999999
Q ss_pred EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (313)
Q Consensus 79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (313)
|++...+... .++ .. ........|...|++++++|+.
T Consensus 439 W~l~~s~~~~-----~~~------------~~--------------------------~~~~t~~aHdKdIN~Vaia~nd 475 (775)
T KOG0319|consen 439 WDLPKSKETA-----FPI------------VL--------------------------TCRYTERAHDKDINCVAIAPND 475 (775)
T ss_pred ecCCCccccc-----ccc------------ee--------------------------hhhHHHHhhcccccceEecCCC
Confidence 9987532110 000 00 0001224578899999999999
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeE
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA 237 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~ 237 (313)
..|+|||.|.+.+||++++......+ .+|+..+.++.|+|..+.++|+|.|++||||.+.++.|++++. +...+..
T Consensus 476 kLiAT~SqDktaKiW~le~~~l~~vL---sGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlr 552 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQLRLLGVL---SGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLR 552 (775)
T ss_pred ceEEecccccceeeecccCceEEEEe---eCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEe
Confidence 99999999999999999976665554 4899999999999999999999999999999999999999997 5667888
Q ss_pred EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~ 304 (313)
++|-..+.+++.+|+++ .+++|+..+.+++..+.+|+..||+++-+|++..|.
T Consensus 553 a~F~~~~~qliS~~adG--------------liKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~ 605 (775)
T KOG0319|consen 553 ASFIRNGKQLISAGADG--------------LIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFV 605 (775)
T ss_pred eeeeeCCcEEEeccCCC--------------cEEEEeccchhhhhhhhhccceeEEEeecCccceeE
Confidence 99988888887765533 478999999999999999999999999999988554
No 37
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=5.1e-28 Score=203.07 Aligned_cols=270 Identities=21% Similarity=0.283 Sum_probs=197.8
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCC----CcEEE
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAKL 78 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D----~~v~v 78 (313)
...+|...++-.+|||.|-+++||...|.|||||....+ +..+++--.++|..++|+++++.++..|.. |.+.+
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~ 133 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL 133 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence 456799999999999999999999999999999987644 345777788999999999999988776532 56778
Q ss_pred EECCCCeEEEEe-cCCCCeeEEEeecCCeEEEEEC--CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399 79 WNVETGAQLFTF-NFDSPARSVDFAVGDKLAVITT--DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (313)
Q Consensus 79 Wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (313)
||..+. +-.+ .+...+.+++|.|..-+-.+.. +....+. . .+.-+....+..|..-|+++.++
T Consensus 134 ~DSG~S--vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ff---------e---GPPFKFk~s~r~HskFV~~VRys 199 (603)
T KOG0318|consen 134 WDSGNS--VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFF---------E---GPPFKFKSSFREHSKFVNCVRYS 199 (603)
T ss_pred ecCCCc--cceeeccceeEeeeeccCCCceEEEeccCCCeEEEe---------e---CCCeeeeecccccccceeeEEEC
Confidence 886432 1111 2233445555555333222211 1111100 0 01112233455678889999999
Q ss_pred cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCc-
Q 021399 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP- 234 (313)
Q Consensus 156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~- 234 (313)
|+|.+|++++.||+|.+||=++++.+..+....+|++.|.+++|+||+..++|+|.|.++||||+.+.++++++.....
T Consensus 200 PDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v 279 (603)
T KOG0318|consen 200 PDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTV 279 (603)
T ss_pred CCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCch
Confidence 9999999999999999999999999998887789999999999999999999999999999999999999999875332
Q ss_pred ---eeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399 235 ---VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 235 ---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~ 304 (313)
.-.+-|. .++++.-.- ++ .+.+++......+..++||+..|++++.+||++.+=
T Consensus 280 ~dqqvG~lWq--kd~lItVSl-~G-------------~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~ 336 (603)
T KOG0318|consen 280 EDQQVGCLWQ--KDHLITVSL-SG-------------TINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIY 336 (603)
T ss_pred hceEEEEEEe--CCeEEEEEc-Cc-------------EEEEecccCCChhheecccccceeEEEEcCCCCEEE
Confidence 2233444 333333211 11 245666666667788999999999999999997753
No 38
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.8e-29 Score=221.32 Aligned_cols=227 Identities=21% Similarity=0.394 Sum_probs=175.9
Q ss_pred cc-ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC--------------------------------C----------
Q 021399 6 MK-GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--------------------------------G---------- 42 (313)
Q Consensus 6 l~-~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~--------------------------------~---------- 42 (313)
+. .|.++|+++.||+||++||+||+|+.|+||.+.. .
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 44 8999999999999999999999999999996654 0
Q ss_pred ------------------cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecC
Q 021399 43 ------------------ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG 104 (313)
Q Consensus 43 ------------------~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~ 104 (313)
+++..|.||.+.|..++|+.+ ++|+|+|.|.|||+|++...+++..+.
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~------------- 407 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS------------- 407 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-------------
Confidence 112235799999999999975 589999999999999998877765442
Q ss_pred CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC-CCEEEEeeCCCeEEEEECCCCceeee
Q 021399 105 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKE 183 (313)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~t~~~d~~i~lwd~~~~~~~~~ 183 (313)
|..-|++++|+|. .++|++|+-|++||||++...+..-
T Consensus 408 ----------------------------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~- 446 (712)
T KOG0283|consen 408 ----------------------------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD- 446 (712)
T ss_pred ----------------------------------------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe-
Confidence 5567888889885 5899999999999999998765432
Q ss_pred cccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec---------CCceeEEEeccCCCE-EEEcccc
Q 021399 184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---------ERPVNAVTMSPLLDH-VVLGGGQ 253 (313)
Q Consensus 184 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---------~~~~~~~~~~p~~~~-~~~~~~~ 253 (313)
... -...|++++|.|||+..+.|+.+|.+++|+.+..+......- ...|..+.|.|.... ++++..
T Consensus 447 --W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSn- 522 (712)
T KOG0283|consen 447 --WND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSN- 522 (712)
T ss_pred --ehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecC-
Confidence 222 347899999999999999999999999999998877655431 235888888886553 333322
Q ss_pred cCceeEeeccCCCceeeeeeehhhhhhhccccccccc--eeEEEECCCCCeeE
Q 021399 254 DASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP--INALAFNPDGKRYG 304 (313)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~~~fspdgk~~~ 304 (313)
|. .||++|......+.+++|+... -....|+.|||.+.
T Consensus 523 --------DS-----rIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IV 562 (712)
T KOG0283|consen 523 --------DS-----RIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIV 562 (712)
T ss_pred --------CC-----ceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEE
Confidence 22 3677777666667777766432 25668999999964
No 39
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3.1e-28 Score=217.00 Aligned_cols=227 Identities=17% Similarity=0.279 Sum_probs=165.3
Q ss_pred cccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCc--------EEEEecCCCCceEEEEECCCCCe-EEEeeCCC
Q 021399 5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGE--------RLGTYRGHNGAVWCCDVSRDSMT-LITGSADQ 74 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~--------~~~~~~~H~~~V~~~~~~~~~~~-l~s~s~D~ 74 (313)
.+.+|.++|.+++|+|+ +.+|+||+.|+.|+|||+.++. .+..+.+|...|.+++|+|++.. ++|++.|+
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg 148 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS 148 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC
Confidence 68899999999999997 7899999999999999987642 34578899999999999998874 57999999
Q ss_pred cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE
Q 021399 75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (313)
Q Consensus 75 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (313)
+|++||+++++.+..+ . +...|.++.|
T Consensus 149 tIrIWDl~tg~~~~~i----------------------------------------------------~-~~~~V~Slsw 175 (568)
T PTZ00420 149 FVNIWDIENEKRAFQI----------------------------------------------------N-MPKKLSSLKW 175 (568)
T ss_pred eEEEEECCCCcEEEEE----------------------------------------------------e-cCCcEEEEEE
Confidence 9999999876533211 1 2245788999
Q ss_pred ccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceece-----EEEEECCCCCEEEEeeCCC----cEEEEECCC-Cc
Q 021399 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI-----TSLAKAADGSHFLTGSLDK----SAKLWDART-LE 224 (313)
Q Consensus 155 ~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v-----~~~~~s~~~~~l~s~s~dg----~i~iwd~~~-~~ 224 (313)
+|+|..|++++.|+.|+|||+++++.+.++. +|.+.+ ....|++++.+|++++.|+ +|+|||++. .+
T Consensus 176 spdG~lLat~s~D~~IrIwD~Rsg~~i~tl~---gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~ 252 (568)
T PTZ00420 176 NIKGNLLSGTCVGKHMHIIDPRKQEIASSFH---IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTS 252 (568)
T ss_pred CCCCCEEEEEecCCEEEEEECCCCcEEEEEe---cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCC
Confidence 9999999999999999999999988776553 465543 2334568999999988875 799999995 56
Q ss_pred EEEEEecCCceeE--EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399 225 LIKTYVTERPVNA--VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (313)
Q Consensus 225 ~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd 299 (313)
++.....+..... -.+.++.+.++++|+.| ..++.|+.+.+.+ ..+..+. +..++..++|.|.
T Consensus 253 pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD-~tIr~~e~~~~~~----------~~l~~~~-s~~p~~g~~f~Pk 317 (568)
T PTZ00420 253 ALVTMSIDNASAPLIPHYDESTGLIYLIGKGD-GNCRYYQHSLGSI----------RKVNEYK-SCSPFRSFGFLPK 317 (568)
T ss_pred ceEEEEecCCccceEEeeeCCCCCEEEEEECC-CeEEEEEccCCcE----------Eeecccc-cCCCccceEEccc
Confidence 6666544333222 23445444555554433 3345555433211 1122233 5778888999986
No 40
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=2.6e-28 Score=202.31 Aligned_cols=235 Identities=22% Similarity=0.339 Sum_probs=198.8
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
.+|..|+++|.+|.|+.+|.+|++++.|+++.+||..+++....|.-|+.+-..+.|-. +..|++++.|+.|+|+.+..
T Consensus 270 ~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~ 348 (524)
T KOG0273|consen 270 STLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGE 348 (524)
T ss_pred hhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEec-CceEeecCCCceEEEEEecC
Confidence 47889999999999999999999999999999999999999999999998867778864 45799999999999999988
Q ss_pred CeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC----
Q 021399 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN---- 158 (313)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---- 158 (313)
..++.++. +..++..+.|.|...+++..++. ....+|... ....+..+..|...|+.+.|+|.+
T Consensus 349 ~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD-----~TlkiWs~~------~~~~~~~l~~Hskei~t~~wsp~g~v~~ 417 (524)
T KOG0273|consen 349 DRPVKTFIGHHGEVNALKWNPTGSLLASCSDD-----GTLKIWSMG------QSNSVHDLQAHSKEIYTIKWSPTGPVTS 417 (524)
T ss_pred CCcceeeecccCceEEEEECCCCceEEEecCC-----CeeEeeecC------CCcchhhhhhhccceeeEeecCCCCccC
Confidence 77776654 57789999999977777665542 222223221 122344567888999999999886
Q ss_pred -----CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC
Q 021399 159 -----RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233 (313)
Q Consensus 159 -----~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 233 (313)
..+++++.|++|++||+..+.++..+. .|...|.+++|+|+|.++|+|+.||.|.+|+.++++.++.+....
T Consensus 418 n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~---kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~ 494 (524)
T KOG0273|consen 418 NPNMNLMLASASFDSTVKLWDVESGVPIHTLM---KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG 494 (524)
T ss_pred CCcCCceEEEeecCCeEEEEEccCCceeEeec---cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence 368999999999999999999887764 699999999999999999999999999999999999999999888
Q ss_pred ceeEEEeccCCCEEEEcccc
Q 021399 234 PVNAVTMSPLLDHVVLGGGQ 253 (313)
Q Consensus 234 ~~~~~~~~p~~~~~~~~~~~ 253 (313)
.|+.++|+..++.+.++.++
T Consensus 495 ~Ifel~Wn~~G~kl~~~~sd 514 (524)
T KOG0273|consen 495 GIFELCWNAAGDKLGACASD 514 (524)
T ss_pred eEEEEEEcCCCCEEEEEecC
Confidence 89999999999887766544
No 41
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.9e-30 Score=206.17 Aligned_cols=189 Identities=31% Similarity=0.501 Sum_probs=162.5
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEE--------ecCCCCceEEEEECCCCCeEEEeeCCCcEEEE
Q 021399 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT--------YRGHNGAVWCCDVSRDSMTLITGSADQTAKLW 79 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~--------~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vW 79 (313)
|.+..+.|..|||||++|++||.||-|.+|+..+|+..+. |.-|+.+|.|++|+.|.+.++||+.||.||+|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 4455688999999999999999999999999999986543 44578899999999999999999999999999
Q ss_pred ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC
Q 021399 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (313)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (313)
.+++|+++..+. ..|...|+++.|+.++.
T Consensus 291 ri~tG~ClRrFd---------------------------------------------------rAHtkGvt~l~FSrD~S 319 (508)
T KOG0275|consen 291 RIETGQCLRRFD---------------------------------------------------RAHTKGVTCLSFSRDNS 319 (508)
T ss_pred EEecchHHHHhh---------------------------------------------------hhhccCeeEEEEccCcc
Confidence 999987754331 24667788999999999
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec---CCcee
Q 021399 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---ERPVN 236 (313)
Q Consensus 160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~ 236 (313)
.+++++.|.++|+-.++++++++++. +|+..|+...|++||++|+++|.||+|++|+.++.+|+.++.. +.+++
T Consensus 320 qiLS~sfD~tvRiHGlKSGK~LKEfr---GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vn 396 (508)
T KOG0275|consen 320 QILSASFDQTVRIHGLKSGKCLKEFR---GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVN 396 (508)
T ss_pred hhhcccccceEEEeccccchhHHHhc---CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccce
Confidence 99999999999999999999998875 7999999999999999999999999999999999999988863 44677
Q ss_pred EEEeccCC-CEEEEc
Q 021399 237 AVTMSPLL-DHVVLG 250 (313)
Q Consensus 237 ~~~~~p~~-~~~~~~ 250 (313)
.+-.-|.. .+++++
T Consensus 397 sv~~~PKnpeh~iVC 411 (508)
T KOG0275|consen 397 SVILLPKNPEHFIVC 411 (508)
T ss_pred eEEEcCCCCceEEEE
Confidence 77766643 345554
No 42
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.2e-27 Score=188.28 Aligned_cols=270 Identities=21% Similarity=0.306 Sum_probs=200.0
Q ss_pred ccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCC-cE-EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 8 GHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNG-ER-LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 8 ~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~-~~-~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
..++.|.+|+|||. ..+++.+|.|++||+|+++.. .. -+....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 35778999999994 456668999999999999873 32 3456679999999999999999999999999999999999
Q ss_pred eEEEEecCCCCeeEEEeecCCe---EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 85 AQLFTFNFDSPARSVDFAVGDK---LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
+......+..++..+.|.++-. ++.++.++.+. .|+. +...++..+..+ ++++.+.. ....+
T Consensus 105 Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlK------fWD~------R~~~pv~t~~LP-eRvYa~Dv--~~pm~ 169 (347)
T KOG0647|consen 105 QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLK------FWDT------RSSNPVATLQLP-ERVYAADV--LYPMA 169 (347)
T ss_pred CeeeeeecccceeEEEEecCCCcceeEeccccccee------eccc------CCCCeeeeeecc-ceeeehhc--cCcee
Confidence 8888888899999999887533 33333444332 2222 122333333322 23433322 23467
Q ss_pred EEeeCCCeEEEEECCCCcee-eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEE--EEec-------
Q 021399 162 ISAGEDAIVRIWDTETGKLL-KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--TYVT------- 231 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~------- 231 (313)
+.+..+..|.+++++.+... ++.. +.-+-.++|++..+|.+..+.|+..|.+-+..++.+.+.. ++..
T Consensus 170 vVata~r~i~vynL~n~~te~k~~~--SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~ 247 (347)
T KOG0647|consen 170 VVATAERHIAVYNLENPPTEFKRIE--SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSV 247 (347)
T ss_pred EEEecCCcEEEEEcCCCcchhhhhc--CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCC
Confidence 88888999999999765432 2222 2346678999999999989999999999999887753221 2221
Q ss_pred ---CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 232 ---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 232 ---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
-..++.++|+|..+.++++|+++ ...|||......+.....|..+|++.+|+.+|++|||-+.
T Consensus 248 ~~~VYaVNsi~FhP~hgtlvTaGsDG--------------tf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~g 313 (347)
T KOG0647|consen 248 NDDVYAVNSIAFHPVHGTLVTAGSDG--------------TFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALG 313 (347)
T ss_pred CCceEEecceEeecccceEEEecCCc--------------eEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEee
Confidence 12578999999888888776643 2468998888888888899999999999999999999764
No 43
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=8.1e-28 Score=212.83 Aligned_cols=293 Identities=20% Similarity=0.307 Sum_probs=218.8
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~ 85 (313)
+..|.++|..+.|+|+++.++||+.|..|+||+.++.+++.++.||-+.|..+.|++.--+++|+|.|.||+||+-.+.+
T Consensus 47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~ 126 (1202)
T KOG0292|consen 47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK 126 (1202)
T ss_pred hhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc
Confidence 56799999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred EEEEec-CCCCeeEEEeecCCeE-EEEECCCceeccccceeeeeeeCCC---C----------------CCC--ce--EE
Q 021399 86 QLFTFN-FDSPARSVDFAVGDKL-AVITTDPFMELNSAIHVKRIARDPA---D----------------QGG--ES--VL 140 (313)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~----------------~~~--~~--~~ 140 (313)
++.++. +.+=+-+..|+|.+.+ +.++-+ ..+++|++.--+. . ..+ +. ..
T Consensus 127 ~iavltGHnHYVMcAqFhptEDlIVSaSLD------QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~ 200 (1202)
T KOG0292|consen 127 CIAVLTGHNHYVMCAQFHPTEDLIVSASLD------QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKH 200 (1202)
T ss_pred eEEEEecCceEEEeeccCCccceEEEeccc------ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeee
Confidence 988775 4555677789985444 443333 3344444321000 0 001 11 24
Q ss_pred EecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399 141 ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (313)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~ 220 (313)
+++||.-.|+.++|+|.-+.|++|++|..|++|.+...+.. ++....+|...|.++-|+|..+.|+|.|.|++|++||+
T Consensus 201 VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW-EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm 279 (1202)
T KOG0292|consen 201 VLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW-EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDM 279 (1202)
T ss_pred eecccccccceEEecCCcceEEecCCcceeeEEEeccccce-eehhhhcccCCcceEEecCccceeEecCCCccEEEEec
Confidence 67899999999999999999999999999999998765543 34555689999999999999999999999999999999
Q ss_pred CCCcEEEEEecCCc-eeEEEeccCCCEEEEcccccCceeEeecc-C------------CCceeeeeeehhhhhhhc--cc
Q 021399 221 RTLELIKTYVTERP-VNAVTMSPLLDHVVLGGGQDASAVTTTDH-R------------AGKFEAKFFDKILQEEIG--GV 284 (313)
Q Consensus 221 ~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~--~~ 284 (313)
..-.++.++..+.. --.++-+|..+..+ +|-+.+..+.-.+. | ...-.++.+|..+.+... .+
T Consensus 280 ~kRt~v~tfrrendRFW~laahP~lNLfA-AgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~l 358 (1202)
T KOG0292|consen 280 TKRTSVQTFRRENDRFWILAAHPELNLFA-AGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASL 358 (1202)
T ss_pred ccccceeeeeccCCeEEEEEecCCcceee-eecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEec
Confidence 99999999876543 44577899876433 33333332322221 0 012235667765533322 22
Q ss_pred cc---cccceeEEEECCCCCeeEEE
Q 021399 285 KG---HFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 285 ~~---h~~~V~~~~fspdgk~~~~~ 306 (313)
+. -..++.++.|+|...-+-+|
T Consensus 359 r~~g~~~~~~~smsYNpae~~vlic 383 (1202)
T KOG0292|consen 359 RRPGTLWQPPRSLSYNPAENAVLIC 383 (1202)
T ss_pred cCCCcccCCcceeeeccccCeEEEE
Confidence 21 13678889999986665544
No 44
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=207.04 Aligned_cols=234 Identities=21% Similarity=0.324 Sum_probs=188.2
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC-CCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
.+++.|..+|.++.|+++|.+++||+.||.||+|+..-... +.+.+ |..+|.+++|+|+...|+|||.||+|+|||..
T Consensus 132 tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV-k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 132 TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV-KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh-HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence 46889999999999999999999999999999998765443 44555 45899999999998999999999999999987
Q ss_pred CCeEEEEe-cCCCCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399 83 TGAQLFTF-NFDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (313)
..+....+ .+.-.+.+++|+|...+++..+ +. .+.+|+ ..++..+..+.+|.+.|..+.|+|++++
T Consensus 211 ~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn------lVKlWD------prSg~cl~tlh~HKntVl~~~f~~n~N~ 278 (464)
T KOG0284|consen 211 MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN------LVKLWD------PRSGSCLATLHGHKNTVLAVKFNPNGNW 278 (464)
T ss_pred CCchhheeccCCCCcceeccCCccceeEEccCCc------eeEeec------CCCcchhhhhhhccceEEEEEEcCCCCe
Confidence 76655444 3566889999998655544433 22 222222 2356677788899999999999999999
Q ss_pred EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEEe--cCCceeE
Q 021399 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNA 237 (313)
Q Consensus 161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~ 237 (313)
++|+|.|..++++|+++.+.+.++ .+|+..++++.|+| ..+.|.+|+.||.|..|.+...+++..+. ++..|-+
T Consensus 279 Llt~skD~~~kv~DiR~mkEl~~~---r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iws 355 (464)
T KOG0284|consen 279 LLTGSKDQSCKVFDIRTMKELFTY---RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWS 355 (464)
T ss_pred eEEccCCceEEEEehhHhHHHHHh---hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceee
Confidence 999999999999999865555444 47999999999999 45678899999999999998777777664 4667999
Q ss_pred EEeccCCCEEEEccccc
Q 021399 238 VTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 238 ~~~~p~~~~~~~~~~~~ 254 (313)
++|+|.|..++. |+.|
T Consensus 356 l~~hPlGhil~t-gsnd 371 (464)
T KOG0284|consen 356 LAYHPLGHILAT-GSND 371 (464)
T ss_pred eeccccceeEee-cCCC
Confidence 999999876655 4433
No 45
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=3.7e-28 Score=192.59 Aligned_cols=273 Identities=19% Similarity=0.273 Sum_probs=184.2
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCC--------CceEEEEECCCCC-eEEEeeCCCc
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN--------GAVWCCDVSRDSM-TLITGSADQT 75 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~--------~~V~~~~~~~~~~-~l~s~s~D~~ 75 (313)
+|+||.+.|++++|+.||++|+|++.|+.|+||++++-+. +.|+ +--+.+.|+||-+ .++++-...+
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~----~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~ 156 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFEN----KEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNK 156 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhh----hhhhHhhccccCCCceEEEECCCcceEEEEEccCCE
Confidence 7999999999999999999999999999999999886422 2221 1236789999866 5566677888
Q ss_pred EEEEECCC---Ce----EEE--E--e--cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe
Q 021399 76 AKLWNVET---GA----QLF--T--F--NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142 (313)
Q Consensus 76 v~vWd~~~---~~----~~~--~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (313)
+++|-+.. |. .+. . + .+..++..+-...+.+++..... ...+-+|++ .++.+..+
T Consensus 157 l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~-----dt~i~lw~l-------kGq~L~~i 224 (420)
T KOG2096|consen 157 LCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASL-----DTKICLWDL-------KGQLLQSI 224 (420)
T ss_pred EEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecC-----CCcEEEEec-------CCceeeee
Confidence 99997632 21 011 1 1 12223333333344444433221 122222322 13444555
Q ss_pred cCCCCceEEEEEccCCCEEEEeeCCCeEEEEECC---CC--ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEE
Q 021399 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE---TG--KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217 (313)
Q Consensus 143 ~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~---~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~i 217 (313)
...+..-+..+.+|+|+++++++-...+++|++- .| +...+.....||+..|+.++|+++...++|.|.||++|+
T Consensus 225 dtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wri 304 (420)
T KOG2096|consen 225 DTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRI 304 (420)
T ss_pred ccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEE
Confidence 5566667788899999999999999999999952 22 234455566799999999999999999999999999999
Q ss_pred EECCCC-------cEEEEEe---c--CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccc
Q 021399 218 WDARTL-------ELIKTYV---T--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK 285 (313)
Q Consensus 218 wd~~~~-------~~~~~~~---~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (313)
||.+-. +.+++.. + ......++++|.++.++++.|++-..+..-+ ++- + ...+ .
T Consensus 305 wdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~---g~~----~--~~~e-----~ 370 (420)
T KOG2096|consen 305 WDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASED---GKD----Y--PELE-----D 370 (420)
T ss_pred eeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEccc---Ccc----c--hhHH-----H
Confidence 997531 1222221 0 1123378999999999998877644333222 221 1 1111 2
Q ss_pred ccccceeEEEECCCCCeeEEEE
Q 021399 286 GHFGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 286 ~h~~~V~~~~fspdgk~~~~~~ 307 (313)
.|.+.|.+|+|+||||++|-|-
T Consensus 371 ~h~~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 371 IHSTTISSISYSSDGKYIATCG 392 (420)
T ss_pred hhcCceeeEEecCCCcEEeeec
Confidence 5899999999999999998763
No 46
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.3e-28 Score=211.53 Aligned_cols=232 Identities=22% Similarity=0.310 Sum_probs=200.9
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC-CCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~ 88 (313)
+..|+++.|+++|.+|+.|-.+|.|.|||.++.+.+.++.+ |...|.+++|+ +..+.+|+.|+.|..+|++..+...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~ 294 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV 294 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence 67899999999999999999999999999999999999999 99999999998 5589999999999999987643210
Q ss_pred EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCC
Q 021399 89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168 (313)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~ 168 (313)
..+.+|...|..+.|++++.++|+|+.|+
T Consensus 295 ---------------------------------------------------~~~~~H~qeVCgLkws~d~~~lASGgnDN 323 (484)
T KOG0305|consen 295 ---------------------------------------------------STLQGHRQEVCGLKWSPDGNQLASGGNDN 323 (484)
T ss_pred ---------------------------------------------------hhhhcccceeeeeEECCCCCeeccCCCcc
Confidence 01456888999999999999999999999
Q ss_pred eEEEEECCCCceeeecccccCceeceEEEEECC-CCCEEEEee--CCCcEEEEECCCCcEEEEEecCCceeEEEeccCCC
Q 021399 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGS--LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 245 (313)
Q Consensus 169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~ 245 (313)
.+.|||..+..++..+. .|...|.+++|+| ....||+|+ .|+.|++||..+++++..+.....|..+.|++...
T Consensus 324 ~~~Iwd~~~~~p~~~~~---~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~k 400 (484)
T KOG0305|consen 324 VVFIWDGLSPEPKFTFT---EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYK 400 (484)
T ss_pred ceEeccCCCccccEEEe---ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCC
Confidence 99999996666655543 6999999999999 455788765 69999999999999999998888999999999999
Q ss_pred EEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEEE
Q 021399 246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQ 309 (313)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~~ 309 (313)
-++++.|...+ .+.+|+..+.+.+..+.+|..+|..+++||||..++.-++-
T Consensus 401 Ei~sthG~s~n------------~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~D 452 (484)
T KOG0305|consen 401 ELLSTHGYSEN------------QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAAD 452 (484)
T ss_pred EEEEecCCCCC------------cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEeccc
Confidence 89988776544 45677777788888999999999999999999998876543
No 47
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1e-28 Score=190.01 Aligned_cols=222 Identities=19% Similarity=0.295 Sum_probs=177.6
Q ss_pred ccceeEEEEccCC-CEEEEeeCCCCeEEEeCCC-CcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeE
Q 021399 10 ERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQ 86 (313)
Q Consensus 10 ~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~-~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~ 86 (313)
++.+..++|+++- +.+++++.||+++|||... ..++..++.|+.+|.++.|++- ++.++++|.|++||+|+...++.
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S 139 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS 139 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcc
Confidence 4567889999874 6888899999999999653 4578899999999999999974 56788889999999999775443
Q ss_pred EEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC-CCEEEEee
Q 021399 87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAG 165 (313)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~t~~ 165 (313)
++.+.+|...|..+.|+|. .+.+++++
T Consensus 140 ----------------------------------------------------v~Tf~gh~~~Iy~a~~sp~~~nlfas~S 167 (311)
T KOG0277|consen 140 ----------------------------------------------------VQTFNGHNSCIYQAAFSPHIPNLFASAS 167 (311)
T ss_pred ----------------------------------------------------eEeecCCccEEEEEecCCCCCCeEEEcc
Confidence 3345678888999999986 57899999
Q ss_pred CCCeEEEEECCCCceeeecccccCceeceEEEEECC-CCCEEEEeeCCCcEEEEECCCC-cEEEEEe-cCCceeEEEecc
Q 021399 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTL-ELIKTYV-TERPVNAVTMSP 242 (313)
Q Consensus 166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~p 242 (313)
.|+.+++||++.......+ ..|...+.+..|+. +.+.++||+.|+.||.||++.. .++.++. +.-.|+.+.|+|
T Consensus 168 gd~~l~lwdvr~~gk~~~i---~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sp 244 (311)
T KOG0277|consen 168 GDGTLRLWDVRSPGKFMSI---EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSP 244 (311)
T ss_pred CCceEEEEEecCCCceeEE---EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCc
Confidence 9999999998764332223 35888999999986 6677999999999999999985 4566664 345799999999
Q ss_pred CCCEEEEcccccCceeEeeccCCCceeeeeeehh-hhhhhccccccccceeEEEECCC
Q 021399 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI-LQEEIGGVKGHFGPINALAFNPD 299 (313)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~~~fspd 299 (313)
....++++++.|. ..++||.. ....+.+...|++-|..+.||+-
T Consensus 245 h~~~lLaSasYDm-------------T~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 245 HHASLLASASYDM-------------TVRIWDPERQDSAIETVDHHTEFVCGLDWSLF 289 (311)
T ss_pred chhhHhhhccccc-------------eEEecccccchhhhhhhhccceEEeccccccc
Confidence 9998888877663 45788865 33445566789999999999986
No 48
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=2.4e-28 Score=196.27 Aligned_cols=240 Identities=23% Similarity=0.409 Sum_probs=189.6
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
.+|.||-..|..+++|+--++|++++.|+.|+-||++..+.+..+-||-..|.|++.+|.-..++|||+|.++||||+++
T Consensus 187 ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt 266 (460)
T KOG0285|consen 187 LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT 266 (460)
T ss_pred EeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (313)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t 163 (313)
... +..+.||.++|.++.+.|....+++
T Consensus 267 r~~----------------------------------------------------V~~l~GH~~~V~~V~~~~~dpqvit 294 (460)
T KOG0285|consen 267 RAS----------------------------------------------------VHVLSGHTNPVASVMCQPTDPQVIT 294 (460)
T ss_pred cce----------------------------------------------------EEEecCCCCcceeEEeecCCCceEE
Confidence 532 4456789999999999999999999
Q ss_pred eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEecc
Q 021399 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSP 242 (313)
Q Consensus 164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p 242 (313)
|+.|++|++||+..++.+.+.. .|+..+++++.+|....+||++.|. |+-|++..++.+..+.. ..-+++++.+.
T Consensus 295 ~S~D~tvrlWDl~agkt~~tlt---~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~~ns 370 (460)
T KOG0285|consen 295 GSHDSTVRLWDLRAGKTMITLT---HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLSVNS 370 (460)
T ss_pred ecCCceEEEeeeccCceeEeee---cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccccceeeeeeecc
Confidence 9999999999999998877664 5899999999999999999999885 89999998887777543 44578888776
Q ss_pred CCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
++ ++++|++. +.+..||-+.+..-.+. .+....+.+. -...|++.+|...|.++--+
T Consensus 371 D~--v~~~G~dn-g~~~fwdwksg~nyQ~~---~t~vqpGSl~-sEagI~as~fDktg~rlit~ 427 (460)
T KOG0285|consen 371 DG--VLVSGGDN-GSIMFWDWKSGHNYQRG---QTIVQPGSLE-SEAGIFASCFDKTGSRLITG 427 (460)
T ss_pred Cc--eEEEcCCc-eEEEEEecCcCcccccc---cccccCCccc-cccceeEEeecccCceEEec
Confidence 54 45555543 33444443332211110 1111111221 24578889998888776443
No 49
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=1.8e-26 Score=219.03 Aligned_cols=281 Identities=14% Similarity=0.181 Sum_probs=196.9
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC----c----EEEEecCCCCceEEEEECCC-CCeEEEeeCCCcE
Q 021399 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----E----RLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTA 76 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~----~----~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v 76 (313)
+.+|...|.+++|+|+|++|++|+.|+.|+||+.... . ....+. +...|.+++|++. ++.+++++.||+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 4568999999999999999999999999999997532 1 122333 3567999999874 6799999999999
Q ss_pred EEEECCCCeEEEEec-CCCCeeEEEeec-CCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399 77 KLWNVETGAQLFTFN-FDSPARSVDFAV-GDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (313)
Q Consensus 77 ~vWd~~~~~~~~~~~-~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (313)
++||+.+++.+..+. +...+.++.|++ ++. ++.++.+. .+.+|++.. +..+..+.. ...+.++.
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg------~v~iWd~~~------~~~~~~~~~-~~~v~~v~ 624 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG------SVKLWSINQ------GVSIGTIKT-KANICCVQ 624 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC------EEEEEECCC------CcEEEEEec-CCCeEEEE
Confidence 999999888776664 456788999986 333 44444333 334444321 223344443 35688888
Q ss_pred Ec-cCCCEEEEeeCCCeEEEEECCCCc-eeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC------cE
Q 021399 154 WG-PLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL------EL 225 (313)
Q Consensus 154 ~~-~~~~~i~t~~~d~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~------~~ 225 (313)
|+ +++..+++|+.|+.|++||+++.+ .+..+ .+|...|.++.|. ++.+|++++.|++|++||+++. .+
T Consensus 625 ~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~---~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~ 700 (793)
T PLN00181 625 FPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM---IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETP 700 (793)
T ss_pred EeCCCCCEEEEEeCCCeEEEEECCCCCccceEe---cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcc
Confidence 85 568999999999999999998754 23332 3688999999996 7789999999999999999753 45
Q ss_pred EEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhh--ccccccccceeEEEECCCCCe
Q 021399 226 IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEI--GGVKGHFGPINALAFNPDGKR 302 (313)
Q Consensus 226 ~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~~~fspdgk~ 302 (313)
+.++. +...+.+++|+|++..+++++ . ++.+.+|+........ .|.......+ .....|...|.+++|+|+|+.
T Consensus 701 l~~~~gh~~~i~~v~~s~~~~~lasgs-~-D~~v~iw~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 701 LHSFMGHTNVKNFVGLSVSDGYIATGS-E-TNEVFVYHKAFPMPVL-SYKFKTIDPVSGLEVDDASQFISSVCWRGQSST 777 (793)
T ss_pred eEEEcCCCCCeeEEEEcCCCCEEEEEe-C-CCEEEEEECCCCCceE-EEecccCCcccccccCCCCcEEEEEEEcCCCCe
Confidence 66664 345688999999987655543 3 3446666644322111 1111100011 112356778999999999998
Q ss_pred eEEEE
Q 021399 303 YGFLL 307 (313)
Q Consensus 303 ~~~~~ 307 (313)
++-.-
T Consensus 778 lva~~ 782 (793)
T PLN00181 778 LVAAN 782 (793)
T ss_pred EEEec
Confidence 76543
No 50
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.7e-27 Score=181.91 Aligned_cols=235 Identities=22% Similarity=0.374 Sum_probs=179.3
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC--cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~--~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
++-.+|+..|..++|+|.|++|+++|.|.++.||.-.++ +++.+++||+.+|.|++|+++|++||||++|+.|=||.+
T Consensus 55 vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~ 134 (312)
T KOG0645|consen 55 VLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEI 134 (312)
T ss_pred eccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEe
Confidence 344589999999999999999999999999999965555 578899999999999999999999999999999999999
Q ss_pred CCCe---EEEEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399 82 ETGA---QLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (313)
Q Consensus 82 ~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (313)
.++. +.-.+ .+...+..+.|+|...+++..+ .+..+++++-. .+..=..+..+.+|.+.+.++.|++.
T Consensus 135 deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S-----YDnTIk~~~~~---~dddW~c~~tl~g~~~TVW~~~F~~~ 206 (312)
T KOG0645|consen 135 DEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS-----YDNTIKVYRDE---DDDDWECVQTLDGHENTVWSLAFDNI 206 (312)
T ss_pred cCCCcEEEEeeeccccccccEEEEcCCcceeEEec-----cCCeEEEEeec---CCCCeeEEEEecCccceEEEEEecCC
Confidence 7553 33333 3456788888998655554332 12222222211 12223467788999999999999999
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC--cE----EE--EE
Q 021399 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL--EL----IK--TY 229 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~--~~----~~--~~ 229 (313)
|.+++++++|++++||-..+. + ..-|+..+..++|. ...|+|++.|+.|+++.-... ++ +. ..
T Consensus 207 G~rl~s~sdD~tv~Iw~~~~~-----~--~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~ 277 (312)
T KOG0645|consen 207 GSRLVSCSDDGTVSIWRLYTD-----L--SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEG 277 (312)
T ss_pred CceEEEecCCcceEeeeeccC-----c--chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhc
Confidence 999999999999999986532 1 12377889999998 457999999999999965432 11 11 11
Q ss_pred ecCCceeEEEeccCCCEEEEcccccC
Q 021399 230 VTERPVNAVTMSPLLDHVVLGGGQDA 255 (313)
Q Consensus 230 ~~~~~~~~~~~~p~~~~~~~~~~~~~ 255 (313)
.++..||++.|+|.....++++++|+
T Consensus 278 aHe~dVNsV~w~p~~~~~L~s~~DDG 303 (312)
T KOG0645|consen 278 AHEVDVNSVQWNPKVSNRLASGGDDG 303 (312)
T ss_pred ccccccceEEEcCCCCCceeecCCCc
Confidence 34568999999997677777777764
No 51
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.96 E-value=8.5e-28 Score=188.95 Aligned_cols=236 Identities=23% Similarity=0.374 Sum_probs=188.5
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVET 83 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~ 83 (313)
++++|++.|..+.|.+|+..|+|+|.|++++.||.++|+.++.+++|.+-|+++.-+.-| +++.|++.|+++|+||+++
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecc
Confidence 578999999999999999999999999999999999999999999999999998844334 4788899999999999998
Q ss_pred CeEEEEecCCCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 84 GAQLFTFNFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
.+.+.++...-....+.|... +++..+. .++.+++|++. .++....+.||...|+.+..+|.+.+++
T Consensus 165 k~~~~t~~~kyqltAv~f~d~s~qv~sgg------Idn~ikvWd~r------~~d~~~~lsGh~DtIt~lsls~~gs~ll 232 (338)
T KOG0265|consen 165 KEAIKTFENKYQLTAVGFKDTSDQVISGG------IDNDIKVWDLR------KNDGLYTLSGHADTITGLSLSRYGSFLL 232 (338)
T ss_pred cchhhccccceeEEEEEecccccceeecc------ccCceeeeccc------cCcceEEeecccCceeeEEeccCCCccc
Confidence 887777655556667777653 3443332 23344455442 2456778899999999999999999999
Q ss_pred EeeCCCeEEEEECCCC----ceeeecccccCcee--ceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCce
Q 021399 163 SAGEDAIVRIWDTETG----KLLKESDKETGHKK--TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPV 235 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~----~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~ 235 (313)
+-+-|.++++||++-. .+++.+.. ..|+. .....+|+|++..+.+|+.|..+++||..+...+..+. +...|
T Consensus 233 snsMd~tvrvwd~rp~~p~~R~v~if~g-~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsv 311 (338)
T KOG0265|consen 233 SNSMDNTVRVWDVRPFAPSQRCVKIFQG-HIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSV 311 (338)
T ss_pred cccccceEEEEEecccCCCCceEEEeec-chhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeE
Confidence 9999999999997642 22333322 22443 34567899999999999999999999999888888876 45689
Q ss_pred eEEEeccCCCEEEEcccc
Q 021399 236 NAVTMSPLLDHVVLGGGQ 253 (313)
Q Consensus 236 ~~~~~~p~~~~~~~~~~~ 253 (313)
+++.|+|..+.++.++++
T Consensus 312 n~~~Fhp~e~iils~~sd 329 (338)
T KOG0265|consen 312 NEVDFHPTEPIILSCSSD 329 (338)
T ss_pred EEeeecCCCcEEEEeccC
Confidence 999999999877766543
No 52
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.2e-28 Score=198.83 Aligned_cols=238 Identities=20% Similarity=0.353 Sum_probs=181.2
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec-CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
+|.||.++|..+.||||.++|++|+.|..+++||+.+|.....+. +|..++.+++|.|||..+++|+.|+++..||++.
T Consensus 264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc
Confidence 688999999999999999999999999999999999999877664 4678999999999999999999999999999876
Q ss_pred CeEEEEec--CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399 84 GAQLFTFN--FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 84 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (313)
.. ..... -...+..+...++++.++. ..++.+.+... .. . .-..+..-+.+|++.+++.++++
T Consensus 344 n~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~------e~----~---~dr~lise~~~its~~iS~d~k~ 409 (519)
T KOG0293|consen 344 NI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNR------EA----R---VDRGLISEEQPITSFSISKDGKL 409 (519)
T ss_pred ch-hhcccccccceeEEEEEcCCCcEEEEEecccceeeech------hh----h---hhhccccccCceeEEEEcCCCcE
Confidence 43 22221 1234666777776655544 33332221111 00 0 00001123468999999999999
Q ss_pred EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEE
Q 021399 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVT 239 (313)
Q Consensus 161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~ 239 (313)
+++--.+..+++||++..+.+++...+......|.+..--.+..+++|||.|++|+||+.++++++.++. +...+++|+
T Consensus 410 ~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVs 489 (519)
T KOG0293|consen 410 ALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVS 489 (519)
T ss_pred EEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEe
Confidence 9999999999999999877776654322222345554444566899999999999999999999999987 456799999
Q ss_pred eccCCCEEEEcccccCc
Q 021399 240 MSPLLDHVVLGGGQDAS 256 (313)
Q Consensus 240 ~~p~~~~~~~~~~~~~~ 256 (313)
|+|....+++++++|+.
T Consensus 490 wNP~~p~m~ASasDDgt 506 (519)
T KOG0293|consen 490 WNPADPEMFASASDDGT 506 (519)
T ss_pred cCCCCHHHhhccCCCCe
Confidence 99999999998887753
No 53
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=2.9e-28 Score=211.80 Aligned_cols=201 Identities=26% Similarity=0.409 Sum_probs=171.3
Q ss_pred ccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcE---------EEEecCCCCceEEEEECCCCCeEEEeeCCCc
Q 021399 6 MKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGER---------LGTYRGHNGAVWCCDVSRDSMTLITGSADQT 75 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~---------~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~ 75 (313)
-.||+..|.+++++..+ ..|+++|.|.++++|++...+. ..+..+|.+.|+|++++|+.++++|||+|++
T Consensus 407 ~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt 486 (775)
T KOG0319|consen 407 ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT 486 (775)
T ss_pred hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence 35899999999998776 6999999999999999876321 1244689999999999999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399 76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (313)
Q Consensus 76 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (313)
+|||+++... ...++.||.-.+.++.|+
T Consensus 487 aKiW~le~~~----------------------------------------------------l~~vLsGH~RGvw~V~Fs 514 (775)
T KOG0319|consen 487 AKIWDLEQLR----------------------------------------------------LLGVLSGHTRGVWCVSFS 514 (775)
T ss_pred eeeecccCce----------------------------------------------------EEEEeeCCccceEEEEec
Confidence 9999987432 233567888899999999
Q ss_pred cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCc
Q 021399 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERP 234 (313)
Q Consensus 156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~ 234 (313)
|.+..++|+|.|++|+||.+.+..+++++. ||...|..+.|-.+|+.|+|++.||-+++|++++.+|+.++. +...
T Consensus 515 ~~dq~laT~SgD~TvKIW~is~fSClkT~e---GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~Dr 591 (775)
T KOG0319|consen 515 KNDQLLATCSGDKTVKIWSISTFSCLKTFE---GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDR 591 (775)
T ss_pred cccceeEeccCCceEEEEEeccceeeeeec---CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccce
Confidence 999999999999999999999999999885 799999999999999999999999999999999999999986 5667
Q ss_pred eeEEEeccCCCEEEEcccccCceeEeec
Q 021399 235 VNAVTMSPLLDHVVLGGGQDASAVTTTD 262 (313)
Q Consensus 235 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (313)
+=+++.+|..+.+++++ .|+..+.+.|
T Consensus 592 vWaL~~~~~~~~~~tgg-~Dg~i~~wkD 618 (775)
T KOG0319|consen 592 VWALSVSPLLDMFVTGG-GDGRIIFWKD 618 (775)
T ss_pred eEEEeecCccceeEecC-CCeEEEEeec
Confidence 88899999998655554 4444333333
No 54
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.7e-26 Score=204.78 Aligned_cols=238 Identities=20% Similarity=0.243 Sum_probs=177.1
Q ss_pred cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEE-------------EEecCCCCceEEEEECC-CCCeEEEeeCCC
Q 021399 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-------------GTYRGHNGAVWCCDVSR-DSMTLITGSADQ 74 (313)
Q Consensus 9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~-------------~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~ 74 (313)
|-..|....+++|+..+++++.+..+..|+...+..+ ..+.+|.+.|++++|+| ++++|+|||.|+
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 4556677778889888899998888888886544332 14679999999999999 788999999999
Q ss_pred cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE
Q 021399 75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (313)
Q Consensus 75 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (313)
+|++||+.++..... ....+..+.+|...|..+.|
T Consensus 99 tIkIWdi~~~~~~~~---------------------------------------------~~~~l~~L~gH~~~V~~l~f 133 (493)
T PTZ00421 99 TIMGWGIPEEGLTQN---------------------------------------------ISDPIVHLQGHTKKVGIVSF 133 (493)
T ss_pred EEEEEecCCCccccc---------------------------------------------cCcceEEecCCCCcEEEEEe
Confidence 999999875421100 01234456788999999999
Q ss_pred ccCC-CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC
Q 021399 155 GPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233 (313)
Q Consensus 155 ~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 233 (313)
+|.+ +.+++++.|+.|+|||+.+++.+..+ .+|...|.+++|+|+|+.|++++.|++|++||+++++.+.++....
T Consensus 134 ~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l---~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~ 210 (493)
T PTZ00421 134 HPSAMNVLASAGADMVVNVWDVERGKAVEVI---KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA 210 (493)
T ss_pred CcCCCCEEEEEeCCCEEEEEECCCCeEEEEE---cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCC
Confidence 9985 68999999999999999988766554 3688899999999999999999999999999999999888775432
Q ss_pred --ceeEEEeccCCCEEEEcccc--cCceeEeeccCCCceeeeeeehhhhhhhcccc-ccccceeEEEECCCCCeeEE
Q 021399 234 --PVNAVTMSPLLDHVVLGGGQ--DASAVTTTDHRAGKFEAKFFDKILQEEIGGVK-GHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 234 --~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~fspdgk~~~~ 305 (313)
....+.|.|..+.++++|.+ .+..+.+||.|.... ++.... .+...+....|+||++.+..
T Consensus 211 ~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~-----------p~~~~~~d~~~~~~~~~~d~d~~~L~l 276 (493)
T PTZ00421 211 SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS-----------PYSTVDLDQSSALFIPFFDEDTNLLYI 276 (493)
T ss_pred CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC-----------ceeEeccCCCCceEEEEEcCCCCEEEE
Confidence 24467788888877765532 234455555443221 111111 23446677789999987654
No 55
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-27 Score=202.97 Aligned_cols=274 Identities=15% Similarity=0.234 Sum_probs=217.4
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
+.+..|++.|.++.|+|..++++++-.+|.|.||+.++...++.|+-.+-+|.+..|-+..+.+++|+.|..|+|+++.+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt 86 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT 86 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc
Confidence 35667899999999999999999999999999999999999999998889999999999899999999999999999999
Q ss_pred CeEEEEecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC-CEE
Q 021399 84 GAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTI 161 (313)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~i 161 (313)
++.+..+.. ..=++++..+|....++.+++. ..+.+|+... .=.....++||...|.+++|+|.+ +.|
T Consensus 87 ~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDD-----m~iKlW~we~-----~wa~~qtfeGH~HyVMqv~fnPkD~ntF 156 (794)
T KOG0276|consen 87 GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDD-----MTIKLWDWEN-----EWACEQTFEGHEHYVMQVAFNPKDPNTF 156 (794)
T ss_pred ceeeEEeeccccceeeeeecCCCCeEEecCCc-----cEEEEeeccC-----ceeeeeEEcCcceEEEEEEecCCCccce
Confidence 998888764 4457888888877776666552 2223333221 113456889999999999999875 689
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCC--CEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEE
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG--SHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV 238 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~ 238 (313)
++++-|++|++|.+.+..+..++. +|...|+++.+-+.| .+|+||+.|.+|++||..+..|++++. +.+.+.++
T Consensus 157 aS~sLDrTVKVWslgs~~~nfTl~---gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v 233 (794)
T KOG0276|consen 157 ASASLDRTVKVWSLGSPHPNFTLE---GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFV 233 (794)
T ss_pred eeeeccccEEEEEcCCCCCceeee---ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEE
Confidence 999999999999998877766554 899999999997755 589999999999999999999999986 56789999
Q ss_pred EeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~ 304 (313)
+|+|..+.++. |+.|+ .+.+|. ..+-+....+.--.++||+|+-.++++.++
T Consensus 234 ~fhp~lpiiis-gsEDG-TvriWh------------s~Ty~lE~tLn~gleRvW~I~~~k~~~~i~ 285 (794)
T KOG0276|consen 234 FFHPELPIIIS-GSEDG-TVRIWN------------SKTYKLEKTLNYGLERVWCIAAHKGDGKIA 285 (794)
T ss_pred EecCCCcEEEE-ecCCc-cEEEec------------CcceehhhhhhcCCceEEEEeecCCCCeEE
Confidence 99999886554 45444 344444 333333223332356788888777766643
No 56
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-26 Score=182.07 Aligned_cols=243 Identities=18% Similarity=0.288 Sum_probs=182.8
Q ss_pred CCcc-cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEE--------------------------------
Q 021399 1 MRPI-LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT-------------------------------- 47 (313)
Q Consensus 1 ~~~~-~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~-------------------------------- 47 (313)
|||. .++.-...|.++.|+++|.+|++++.|..++|||..+++++++
T Consensus 4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIr 83 (311)
T KOG1446|consen 4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIR 83 (311)
T ss_pred cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceE
Confidence 4454 4455577899999999999999999999999999988765543
Q ss_pred ------------ecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCc
Q 021399 48 ------------YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPF 115 (313)
Q Consensus 48 ------------~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (313)
|.||...|.+++.+|-++.|+|+|.|++|++||++..++...+.... ...++|.|.+.+.++.....
T Consensus 84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~-~pi~AfDp~GLifA~~~~~~ 162 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG-RPIAAFDPEGLIFALANGSE 162 (311)
T ss_pred EEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC-CcceeECCCCcEEEEecCCC
Confidence 46999999999999999999999999999999999877765554332 22345677666655554421
Q ss_pred eeccccceeeeeeeCCCCCCCceEEEec-CCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceece
Q 021399 116 MELNSAIHVKRIARDPADQGGESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194 (313)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v 194 (313)
.+.++++... +.+.-....+. ....+.+.+.|+|+|++|+.+...+.+++.|.-+|..+..+..........
T Consensus 163 -----~IkLyD~Rs~--dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~ 235 (311)
T KOG1446|consen 163 -----LIKLYDLRSF--DKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLP 235 (311)
T ss_pred -----eEEEEEeccc--CCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcc
Confidence 2223322211 11111111111 345677899999999999999999999999999999877775443333334
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec--CCceeEEEeccCCCEEEEcc
Q 021399 195 TSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 195 ~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~ 251 (313)
.+.+|+||++++++|+.||+|.+|+++++..+..+.. ..++.++.|+|...+.+.++
T Consensus 236 ~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 236 LSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS 294 (311)
T ss_pred eeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC
Confidence 6778999999999999999999999999999988865 46788899999887766554
No 57
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=2.8e-27 Score=194.42 Aligned_cols=236 Identities=22% Similarity=0.328 Sum_probs=194.7
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
+|+||...|..+.|+|+...+++++.|..|+||...+.......+.|+.+|+.+..+|.|++|++++.|++...-|++++
T Consensus 256 ~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g 335 (506)
T KOG0289|consen 256 TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSG 335 (506)
T ss_pred hccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCC
Confidence 78999999999999999999999999999999999888888888999999999999999999999999999999999887
Q ss_pred eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
.+...... +...-.+++.+|+|+|..|.+|
T Consensus 336 ~~lt~vs~--------------------------------------------------~~s~v~~ts~~fHpDgLifgtg 365 (506)
T KOG0289|consen 336 SQLTVVSD--------------------------------------------------ETSDVEYTSAAFHPDGLIFGTG 365 (506)
T ss_pred cEEEEEee--------------------------------------------------ccccceeEEeeEcCCceEEecc
Confidence 65432210 0011246788999999999999
Q ss_pred eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC--ceeEEEecc
Q 021399 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSP 242 (313)
Q Consensus 165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~p 242 (313)
..|+.|++||++++.....+ .+|.+.|.+++|+.+|.+++++..|+.|++||+|..+.+.++..+. .+++++|.+
T Consensus 366 t~d~~vkiwdlks~~~~a~F---pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~ 442 (506)
T KOG0289|consen 366 TPDGVVKIWDLKSQTNVAKF---PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQ 442 (506)
T ss_pred CCCceEEEEEcCCccccccC---CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcC
Confidence 99999999999988766555 4799999999999999999999999999999999999888886543 599999999
Q ss_pred CCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
.|.+++++|. ...++..+... +-| +++..+..|++..+.+.|.-+-+.+|-
T Consensus 443 SGt~L~~~g~--~l~Vy~~~k~~-----k~W-----~~~~~~~~~sg~st~v~Fg~~aq~l~s 493 (506)
T KOG0289|consen 443 SGTYLGIAGS--DLQVYICKKKT-----KSW-----TEIKELADHSGLSTGVRFGEHAQYLAS 493 (506)
T ss_pred CCCeEEeecc--eeEEEEEeccc-----ccc-----eeeehhhhcccccceeeecccceEEee
Confidence 9999888742 23344333222 122 334456678899999999888777654
No 58
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.4e-28 Score=205.57 Aligned_cols=192 Identities=19% Similarity=0.317 Sum_probs=164.3
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC-cEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEEC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNV 81 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~-~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~ 81 (313)
..+.+|.+.|.|++.+|.-++++|+|.|.+|++||.+.. .+..+|+||+..|.+++|+|. .+.|+||+-|+|||||++
T Consensus 91 ~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWsl 170 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSL 170 (794)
T ss_pred EEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEc
Confidence 367899999999999999999999999999999999877 467899999999999999994 579999999999999998
Q ss_pred CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC--C
Q 021399 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN--R 159 (313)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~ 159 (313)
.+..+. ..+++|...|+++.+-+.| +
T Consensus 171 gs~~~n----------------------------------------------------fTl~gHekGVN~Vdyy~~gdkp 198 (794)
T KOG0276|consen 171 GSPHPN----------------------------------------------------FTLEGHEKGVNCVDYYTGGDKP 198 (794)
T ss_pred CCCCCc----------------------------------------------------eeeeccccCcceEEeccCCCcc
Confidence 764332 2345777788888876544 6
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEE
Q 021399 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV 238 (313)
Q Consensus 160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~ 238 (313)
++++|++|.+|++||.++..+++++. ||...|..+.|+|.=..|+|||.||++|||+..|.+...++. .-..+-|+
T Consensus 199 ylIsgaDD~tiKvWDyQtk~CV~TLe---GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I 275 (794)
T KOG0276|consen 199 YLISGADDLTIKVWDYQTKSCVQTLE---GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCI 275 (794)
T ss_pred eEEecCCCceEEEeecchHHHHHHhh---cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEE
Confidence 89999999999999999999887764 899999999999999999999999999999999988777764 33457777
Q ss_pred EeccCCCEEEEc
Q 021399 239 TMSPLLDHVVLG 250 (313)
Q Consensus 239 ~~~p~~~~~~~~ 250 (313)
+-.+..+.++++
T Consensus 276 ~~~k~~~~i~vG 287 (794)
T KOG0276|consen 276 AAHKGDGKIAVG 287 (794)
T ss_pred eecCCCCeEEEe
Confidence 777777665553
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=4.2e-26 Score=216.52 Aligned_cols=229 Identities=17% Similarity=0.259 Sum_probs=178.3
Q ss_pred cccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCCCeE
Q 021399 9 HERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQ 86 (313)
Q Consensus 9 h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~~~~ 86 (313)
+...+.+++|++ ++.+|++++.|+.|++||+.+++.+..+.+|.+.|++++|+| ++.+|+||+.|++|++||+.++..
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 345788999987 478999999999999999999999999999999999999996 688999999999999999998887
Q ss_pred EEEecCCCCeeEEEeec-CC-eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 87 LFTFNFDSPARSVDFAV-GD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 87 ~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
+..+.....+.++.|.+ ++ .++.+..+. .+.+|++.. .......+.+|...|..+.|. ++..++++
T Consensus 611 ~~~~~~~~~v~~v~~~~~~g~~latgs~dg------~I~iwD~~~-----~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~ 678 (793)
T PLN00181 611 IGTIKTKANICCVQFPSESGRSLAFGSADH------KVYYYDLRN-----PKLPLCTMIGHSKTVSYVRFV-DSSTLVSS 678 (793)
T ss_pred EEEEecCCCeEEEEEeCCCCCEEEEEeCCC------eEEEEECCC-----CCccceEecCCCCCEEEEEEe-CCCEEEEE
Confidence 77666556677777754 33 444443333 333444321 112345567899999999997 57789999
Q ss_pred eCCCeEEEEECCCC------ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe--------
Q 021399 165 GEDAIVRIWDTETG------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-------- 230 (313)
Q Consensus 165 ~~d~~i~lwd~~~~------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------- 230 (313)
+.|+.|++||+..+ .++..+ .+|...+.+++|++++.+|++|+.|+.|++|+.....++..+.
T Consensus 679 s~D~~ikiWd~~~~~~~~~~~~l~~~---~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~ 755 (793)
T PLN00181 679 STDNTLKLWDLSMSISGINETPLHSF---MGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVS 755 (793)
T ss_pred ECCCEEEEEeCCCCccccCCcceEEE---cCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCccc
Confidence 99999999998743 333333 4788899999999999999999999999999987665443221
Q ss_pred ------cCCceeEEEeccCCCEEEEccc
Q 021399 231 ------TERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 231 ------~~~~~~~~~~~p~~~~~~~~~~ 252 (313)
....+.+++|+|++..+++++.
T Consensus 756 ~~~~~~~~~~V~~v~ws~~~~~lva~~~ 783 (793)
T PLN00181 756 GLEVDDASQFISSVCWRGQSSTLVAANS 783 (793)
T ss_pred ccccCCCCcEEEEEEEcCCCCeEEEecC
Confidence 1235899999999988776654
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2e-27 Score=210.38 Aligned_cols=270 Identities=19% Similarity=0.271 Sum_probs=211.3
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~ 89 (313)
+..|..++|+|..++++++--.|.|++||..=++++..|.+|+++|..++|+|+..+|+|||.|-+|+||++.+.+++++
T Consensus 9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclft 88 (1202)
T KOG0292|consen 9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFT 88 (1202)
T ss_pred cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhh
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999888776
Q ss_pred ecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCC
Q 021399 90 FNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168 (313)
Q Consensus 90 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~ 168 (313)
+.. -.=++++.|++.--.++..++ +..+++|+.. +...+.++.||.-.|.+.+|+|....++++|-|-
T Consensus 89 L~GHlDYVRt~~FHheyPWIlSASD-----DQTIrIWNwq------sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQ 157 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFFHHEYPWILSASD-----DQTIRIWNWQ------SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQ 157 (1202)
T ss_pred hccccceeEEeeccCCCceEEEccC-----CCeEEEEecc------CCceEEEEecCceEEEeeccCCccceEEEecccc
Confidence 542 334566667654433333332 2233444432 3567888999999999999999999999999999
Q ss_pred eEEEEECCCCce--eee---------------c---------ccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399 169 IVRIWDTETGKL--LKE---------------S---------DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (313)
Q Consensus 169 ~i~lwd~~~~~~--~~~---------------~---------~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (313)
+||+||+.--+. ... + ....||...|+-++|+|.-..|+||+.|..|++|.+..
T Consensus 158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne 237 (1202)
T KOG0292|consen 158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE 237 (1202)
T ss_pred eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecc
Confidence 999999642100 000 0 01257888999999999999999999999999998765
Q ss_pred CcEE---EEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399 223 LELI---KTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (313)
Q Consensus 223 ~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd 299 (313)
.+.- ....+...+.++-|+|..+.++.. +.|. .++.||....+.++.+.--+.+-|.++-+|.
T Consensus 238 tKaWEvDtcrgH~nnVssvlfhp~q~lIlSn-sEDk-------------sirVwDm~kRt~v~tfrrendRFW~laahP~ 303 (1202)
T KOG0292|consen 238 TKAWEVDTCRGHYNNVSSVLFHPHQDLILSN-SEDK-------------SIRVWDMTKRTSVQTFRRENDRFWILAAHPE 303 (1202)
T ss_pred ccceeehhhhcccCCcceEEecCccceeEec-CCCc-------------cEEEEecccccceeeeeccCCeEEEEEecCC
Confidence 4322 112345679999999998876654 4443 3678888888888888777788899999998
Q ss_pred CCeeE
Q 021399 300 GKRYG 304 (313)
Q Consensus 300 gk~~~ 304 (313)
...||
T Consensus 304 lNLfA 308 (1202)
T KOG0292|consen 304 LNLFA 308 (1202)
T ss_pred cceee
Confidence 88765
No 61
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=1.3e-25 Score=187.42 Aligned_cols=233 Identities=30% Similarity=0.483 Sum_probs=191.3
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
..+.+|...+..+.|+|++++|++++.|+.+++|+..+++.+..+..|...|.++.|+++++++++++.|+.+++||+.+
T Consensus 45 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 124 (289)
T cd00200 45 RTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET 124 (289)
T ss_pred EEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence 35678888999999999999999999999999999999888889999999999999999988898888899999999998
Q ss_pred CeEEEEec-CCCCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
++....+. ....+..+.+.+...+++... +. .+.++++. .......+..|...+..+.|+|+++.+
T Consensus 125 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~------~i~i~d~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l 192 (289)
T cd00200 125 GKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG------TIKLWDLR------TGKCVATLTGHTGEVNSVAFSPDGEKL 192 (289)
T ss_pred cEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC------cEEEEEcc------ccccceeEecCccccceEEECCCcCEE
Confidence 77776665 455688888988766666554 32 22333322 123444556777889999999999999
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEe
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTM 240 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~ 240 (313)
++++.|+.|++||+..++.+..+. .|...+.++++++++.++++++.||.+++||+++++++..+. +...+.+++|
T Consensus 193 ~~~~~~~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~ 269 (289)
T cd00200 193 LSSSSDGTIKLWDLSTGKCLGTLR---GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAW 269 (289)
T ss_pred EEecCCCcEEEEECCCCceecchh---hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEE
Confidence 999999999999998877665542 477799999999998889888889999999999988887775 3457999999
Q ss_pred ccCCCEEEEcc
Q 021399 241 SPLLDHVVLGG 251 (313)
Q Consensus 241 ~p~~~~~~~~~ 251 (313)
+|++..+++++
T Consensus 270 ~~~~~~l~~~~ 280 (289)
T cd00200 270 SPDGKRLASGS 280 (289)
T ss_pred CCCCCEEEEec
Confidence 99988776654
No 62
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=3.3e-28 Score=194.97 Aligned_cols=224 Identities=24% Similarity=0.398 Sum_probs=167.3
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
.+|.||+++|.|+.|. .+.|+|||.|.+|+|||.++++.++++-+|...|.-+.|+ +.+++|+|.|.++.+||+.+
T Consensus 231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~s 306 (499)
T KOG0281|consen 231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMAS 306 (499)
T ss_pred HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccC
Confidence 3689999999999985 5699999999999999999999999999999999999997 44899999999999999976
Q ss_pred CeEEEE----ecCCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399 84 GAQLFT----FNFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (313)
Q Consensus 84 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (313)
...+.. ..+...+..++|.. +.++. +.+.. +++|++ ...+.+..+.+|+-.|.++++ .+
T Consensus 307 ps~it~rrVLvGHrAaVNvVdfd~--kyIVsASgDRT------ikvW~~------st~efvRtl~gHkRGIAClQY--r~ 370 (499)
T KOG0281|consen 307 PTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRT------IKVWST------STCEFVRTLNGHKRGIACLQY--RD 370 (499)
T ss_pred chHHHHHHHHhhhhhheeeecccc--ceEEEecCCce------EEEEec------cceeeehhhhcccccceehhc--cC
Confidence 542211 12334555555543 33333 23322 233332 235567788899988877765 46
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE---------EEEE
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL---------IKTY 229 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~---------~~~~ 229 (313)
+++++|+.|.+|++||.+.|.+++.++ ||+.-|+++.|. .+.|+||..||+|++||+.++.. +..+
T Consensus 371 rlvVSGSSDntIRlwdi~~G~cLRvLe---GHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~l 445 (499)
T KOG0281|consen 371 RLVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTL 445 (499)
T ss_pred eEEEecCCCceEEEEeccccHHHHHHh---chHHhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhh
Confidence 899999999999999999999987664 899999999985 57899999999999999887542 2222
Q ss_pred e-cCCceeEEEeccCCCEEEEccccc
Q 021399 230 V-TERPVNAVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 230 ~-~~~~~~~~~~~p~~~~~~~~~~~~ 254 (313)
. +.+.+..+.|.. -+++.+.-++
T Consensus 446 v~hsgRVFrLQFD~--fqIvsssHdd 469 (499)
T KOG0281|consen 446 VEHSGRVFRLQFDE--FQIISSSHDD 469 (499)
T ss_pred hhccceeEEEeecc--eEEEeccCCC
Confidence 2 334567777653 3344443333
No 63
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=7.5e-27 Score=211.09 Aligned_cols=250 Identities=23% Similarity=0.344 Sum_probs=188.0
Q ss_pred cccccccccceeEEEEccCCCEEEEee--CCCCeEEEeCCC------------CcEEEEecCCCCceEEEEECCCCCeEE
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCA--KDHTPTVWFADN------------GERLGTYRGHNGAVWCCDVSRDSMTLI 68 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s--~d~~i~iw~~~~------------~~~~~~~~~H~~~V~~~~~~~~~~~l~ 68 (313)
|.-+..+.+.|.++..+|||..++||+ .|+.++||+.+. .+.+.+...|.+.|.|+.|+|||++||
T Consensus 6 p~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA 85 (942)
T KOG0973|consen 6 PTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA 85 (942)
T ss_pred ccccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence 445556666789999999999999999 899999997552 234567789999999999999999999
Q ss_pred EeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCc
Q 021399 69 TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR 148 (313)
Q Consensus 69 s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (313)
+||.|+.|.||.......-..+ .++... .+ ...=..+..+.+|.+.
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~f-------------------gs~g~~---------~~------vE~wk~~~~l~~H~~D 131 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVF-------------------GSTGGA---------KN------VESWKVVSILRGHDSD 131 (942)
T ss_pred eccCcceEEEeeecccCCcccc-------------------cccccc---------cc------cceeeEEEEEecCCCc
Confidence 9999999999997641000000 000000 00 0111356778899999
Q ss_pred eEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEE
Q 021399 149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228 (313)
Q Consensus 149 i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 228 (313)
|.+++|+|++.++++++.|++|.||+..+.+++..+. +|...|-.+.|.|-|++|||-+.|++|++|++.+..+...
T Consensus 132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~---~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~ 208 (942)
T KOG0973|consen 132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLR---GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS 208 (942)
T ss_pred cceeccCCCccEEEEecccceEEEEccccceeeeeee---cccccccceEECCccCeeeeecCCceEEEEEcccceeeEe
Confidence 9999999999999999999999999999887666554 7999999999999999999999999999999777666665
Q ss_pred Eec-------CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399 229 YVT-------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (313)
Q Consensus 229 ~~~-------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd 299 (313)
+.. ......++|+|+|+++++.-+.... .--+.+.+..+.+.-..|.||.+++..++|+|-
T Consensus 209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~----------~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGG----------KSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred eccchhhCCCcceeeecccCCCcCeecchhhccCC----------cceeEEEecCCceeeeeeecCCCceEEEEeChH
Confidence 532 2236789999999998876433221 111222222222223457899999999999984
No 64
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.1e-27 Score=192.84 Aligned_cols=226 Identities=20% Similarity=0.306 Sum_probs=174.6
Q ss_pred cccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
-|.||.++|+|++=+|+- ..++||+.||.|+|||+...+++.+|++|.+.|..+++.. +.++|+|+|++||.|.++.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~ 138 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG 138 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence 368999999999999987 8999999999999999999999999999999999999976 5789999999999999775
Q ss_pred CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (313)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t 163 (313)
. ++.++... +.+..+..+..+..++|
T Consensus 139 ~-p~~tilg~-----------------------------------------------------s~~~gIdh~~~~~~FaT 164 (433)
T KOG0268|consen 139 P-PLHTILGK-----------------------------------------------------SVYLGIDHHRKNSVFAT 164 (433)
T ss_pred C-cceeeecc-----------------------------------------------------ccccccccccccccccc
Confidence 2 11111000 00111111222456888
Q ss_pred eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEecc
Q 021399 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242 (313)
Q Consensus 164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p 242 (313)
||++ |.|||.+-..+++.+.. .-+.+.++.|+|... .|+++..|+.|.+||+++..++........-|.++|+|
T Consensus 165 cGe~--i~IWD~~R~~Pv~smsw---G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP 239 (433)
T KOG0268|consen 165 CGEQ--IDIWDEQRDNPVSSMSW---GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP 239 (433)
T ss_pred cCce--eeecccccCCccceeec---CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc
Confidence 8865 89999876667766554 246789999999654 57777799999999999999999887777889999999
Q ss_pred CCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~ 304 (313)
....++++..| ..+|.+|-|. ..++++..++|.++|.+++|||.|++|+
T Consensus 240 -eafnF~~a~ED-~nlY~~DmR~-----------l~~p~~v~~dhvsAV~dVdfsptG~Efv 288 (433)
T KOG0268|consen 240 -EAFNFVAANED-HNLYTYDMRN-----------LSRPLNVHKDHVSAVMDVDFSPTGQEFV 288 (433)
T ss_pred -cccceeecccc-ccceehhhhh-----------hcccchhhcccceeEEEeccCCCcchhc
Confidence 44555555444 4455555432 2456778899999999999999999986
No 65
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.4e-25 Score=173.44 Aligned_cols=235 Identities=16% Similarity=0.212 Sum_probs=189.2
Q ss_pred ccccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 4 ILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
...++|.+.|-.++|+|. .+.+++++.|++|++||...+++..+...-.+.+. +.|+|+|++++.++.|..|-..|.+
T Consensus 58 ~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g~~~~~~~kdD~it~id~r 136 (313)
T KOG1407|consen 58 LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSPDGEYIAVGNKDDRITFIDAR 136 (313)
T ss_pred hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcCCCCEEEEecCcccEEEEEec
Confidence 357899999999999875 57999999999999999999999888876555554 7899999999999999999999998
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEEECC-CceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTD-PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
+-+......+..-...+.|...+.+-...+. +.+.+ +. . ++-+++..++.|.....++.|+|+|++|
T Consensus 137 ~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~I--------Ls-y---psLkpv~si~AH~snCicI~f~p~Gryf 204 (313)
T KOG1407|consen 137 TYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEI--------LS-Y---PSLKPVQSIKAHPSNCICIEFDPDGRYF 204 (313)
T ss_pred ccceeehhcccceeeeeeecCCCCEEEEecCCceEEE--------Ee-c---cccccccccccCCcceEEEEECCCCceE
Confidence 8776655555445555556544333332221 22111 11 1 2346788889999999999999999999
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEec
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS 241 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 241 (313)
|+|+.|-.+.|||+..--+.+.+. .+.-.|+.+.|+-||.+||+||.|..|-|=+++||..+.+++.+.+-+.|+|+
T Consensus 205 A~GsADAlvSLWD~~ELiC~R~is---RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWH 281 (313)
T KOG1407|consen 205 ATGSADALVSLWDVDELICERCIS---RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWH 281 (313)
T ss_pred eeccccceeeccChhHhhhheeec---cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEec
Confidence 999999999999998655555553 47789999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEccccc
Q 021399 242 PLLDHVVLGGGQD 254 (313)
Q Consensus 242 p~~~~~~~~~~~~ 254 (313)
|....++.++.+.
T Consensus 282 Pk~~LLAyA~ddk 294 (313)
T KOG1407|consen 282 PKRPLLAYACDDK 294 (313)
T ss_pred CCCceeeEEecCC
Confidence 9988777766543
No 66
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.95 E-value=8.3e-26 Score=182.91 Aligned_cols=270 Identities=21% Similarity=0.382 Sum_probs=199.0
Q ss_pred cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC---CCeEEEeeCCCcEEEEECCCCe
Q 021399 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD---SMTLITGSADQTAKLWNVETGA 85 (313)
Q Consensus 9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~---~~~l~s~s~D~~v~vWd~~~~~ 85 (313)
|.+=|.++.-. +++|+||+.||.+++||. .|+.+.++.||.++|.+++|.-. ...|+++|.|.++++|..+.++
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~ 180 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGE 180 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCch
Confidence 55556666555 789999999999999995 68888999999999998887432 3369999999999999987765
Q ss_pred EEEEe-----cCCCCeeEEEeec-CCeEEEEECCCceeccccce-----eee--------eeeCCCCCCCceEEEecCCC
Q 021399 86 QLFTF-----NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIH-----VKR--------IARDPADQGGESVLILKGPQ 146 (313)
Q Consensus 86 ~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~ 146 (313)
..... .+..++.++.... +..++.++.+....++.... +.. -.++.......++..+.||.
T Consensus 181 ~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt 260 (423)
T KOG0313|consen 181 NKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHT 260 (423)
T ss_pred hhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccc
Confidence 43221 3455667777655 44555555554433333100 000 00111223356778899999
Q ss_pred CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc--
Q 021399 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-- 224 (313)
Q Consensus 147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~-- 224 (313)
++|..+.|++ ...+.+++.|.+|+.||+.++....++. -+...++++.+|..+.|++|+.|..+++||.+++.
T Consensus 261 ~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~----~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 261 EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT----TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred cceeeEEEcC-CCceEeecccceEEEEEeecccceeeee----cCcceeEeecccccceeeecCCCCceeecCCCCCCCc
Confidence 9999999999 5678999999999999999998877654 35678999999999999999999999999999853
Q ss_pred EE-EEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhh-hhccccccccceeEEEECCC
Q 021399 225 LI-KTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE-EIGGVKGHFGPINALAFNPD 299 (313)
Q Consensus 225 ~~-~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~~~fspd 299 (313)
.+ .++. +..-+.++.|+|...+++++++.|.. +++||..+.+ ++-.+.+|...|.++.|+-.
T Consensus 336 ~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t-------------~klWDvRS~k~plydI~~h~DKvl~vdW~~~ 400 (423)
T KOG0313|consen 336 VVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT-------------VKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG 400 (423)
T ss_pred eeEEeeecchhhhhheecCCCCceEEEEEecCCe-------------EEEEEeccCCCcceeeccCCceEEEEeccCC
Confidence 22 2332 34458889999999999998876642 3556655444 55667899999999999843
No 67
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.8e-26 Score=182.06 Aligned_cols=268 Identities=23% Similarity=0.412 Sum_probs=197.3
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC--
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV-- 81 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~-- 81 (313)
+.+.||+++|+.++-...-+.+.++|.|.+.+||.++++.++.++.||.++|+++.|++.+.+++|+|.|++..||..
T Consensus 142 re~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av 221 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAV 221 (481)
T ss_pred hhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhh
Confidence 367899999999998888889999999999999999999999999999999999999999999999999999999962
Q ss_pred ----CCC--------e--EEE------------------------Ee-cCCCCeeEEEeecC-CeEEEEECCCceecccc
Q 021399 82 ----ETG--------A--QLF------------------------TF-NFDSPARSVDFAVG-DKLAVITTDPFMELNSA 121 (313)
Q Consensus 82 ----~~~--------~--~~~------------------------~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 121 (313)
... + ... .+ .+...+...+|..+ .+++..+.+. .
T Consensus 222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR------T 295 (481)
T KOG0300|consen 222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR------T 295 (481)
T ss_pred cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc------c
Confidence 110 0 000 00 01111112222222 2222222221 1
Q ss_pred ceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC
Q 021399 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201 (313)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~ 201 (313)
-.+|++ ..++.+..+.||....+-++-+|..+.+++.+.|.+.+|||.+ ..+..+....||...|+++.|..
T Consensus 296 AnlwDV------Etge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR--eaI~sV~VFQGHtdtVTS~vF~~ 367 (481)
T KOG0300|consen 296 ANLWDV------ETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR--EAIQSVAVFQGHTDTVTSVVFNT 367 (481)
T ss_pred ceeeee------ccCceeccccCcchhccccccCCcceEEEEeccCceeEeccch--hhcceeeeecccccceeEEEEec
Confidence 222332 3467788899999999999999999999999999999999987 34555555679999999999987
Q ss_pred CCCEEEEeeCCCcEEEEECCCC-cEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh
Q 021399 202 DGSHFLTGSLDKSAKLWDARTL-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE 280 (313)
Q Consensus 202 ~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (313)
+ ..+++||.|.+|++||++.. .++.++....+++.++.+..+..+++ ..|... +++||++-.+.
T Consensus 368 d-d~vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAi--PhDNRq------------vRlfDlnG~Rl 432 (481)
T KOG0300|consen 368 D-DRVVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAI--PHDNRQ------------VRLFDLNGNRL 432 (481)
T ss_pred C-CceeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEe--ccCCce------------EEEEecCCCcc
Confidence 6 46999999999999999875 57788888889999998876655544 233333 45555432111
Q ss_pred ----hccccccccceeEEEECCCC
Q 021399 281 ----IGGVKGHFGPINALAFNPDG 300 (313)
Q Consensus 281 ----~~~~~~h~~~V~~~~fspdg 300 (313)
-..-++|..-|.|.+|.-+-
T Consensus 433 aRlPrtsRqgHrRMV~c~AW~eeh 456 (481)
T KOG0300|consen 433 ARLPRTSRQGHRRMVTCCAWLEEH 456 (481)
T ss_pred ccCCcccccccceeeeeeeccccC
Confidence 11346899999999998664
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=6.1e-26 Score=189.05 Aligned_cols=195 Identities=27% Similarity=0.449 Sum_probs=163.1
Q ss_pred ccccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEEC
Q 021399 4 ILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNV 81 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~ 81 (313)
+.+.+|+.+|..+.|+|++ ..|++|+.|+.+++||+.+...+..+.+|++.|.|.+|+|.+ ..++|||.||+||+||+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt 183 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT 183 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence 4688999999999999875 577888999999999999999888999999999999999865 48999999999999998
Q ss_pred CCC-eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399 82 ETG-AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 82 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (313)
+.. ..+..+ .|..+|-++.+-|.|..
T Consensus 184 R~~~~~v~el-----------------------------------------------------nhg~pVe~vl~lpsgs~ 210 (487)
T KOG0310|consen 184 RSLTSRVVEL-----------------------------------------------------NHGCPVESVLALPSGSL 210 (487)
T ss_pred ccCCceeEEe-----------------------------------------------------cCCCceeeEEEcCCCCE
Confidence 764 222222 24446667777788888
Q ss_pred EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEe
Q 021399 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240 (313)
Q Consensus 161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 240 (313)
|++++. ..+++||+.+|..+.... ..|...|+|+++..++..|+||+.|+.+++||+.+.+.+..+..+.++-+++.
T Consensus 211 iasAgG-n~vkVWDl~~G~qll~~~--~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLsiav 287 (487)
T KOG0310|consen 211 IASAGG-NSVKVWDLTTGGQLLTSM--FNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLSIAV 287 (487)
T ss_pred EEEcCC-CeEEEEEecCCceehhhh--hcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccceeeEEe
Confidence 999885 579999998665332221 24999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEccccc
Q 021399 241 SPLLDHVVLGGGQD 254 (313)
Q Consensus 241 ~p~~~~~~~~~~~~ 254 (313)
+|+++.+++|.++.
T Consensus 288 s~dd~t~viGmsnG 301 (487)
T KOG0310|consen 288 SPDDQTVVIGMSNG 301 (487)
T ss_pred cCCCceEEEecccc
Confidence 99888888765544
No 69
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=9.2e-26 Score=200.57 Aligned_cols=237 Identities=27% Similarity=0.451 Sum_probs=187.2
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~ 85 (313)
|.||++.|+++.|..-+.+|++||.|.++++||..++++.+++.+|.+.|.++...+ ..+++||.|.+|++|++++++
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc
Confidence 899999999999988789999999999999999999999999999999999988754 478889999999999999999
Q ss_pred EEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
.+..+. +..++.++... ++.++.++.+. .+.+|++. .++.+..+.+|..+|.++.+.+. .++++|
T Consensus 323 ~l~l~~~h~~~V~~v~~~-~~~lvsgs~d~------~v~VW~~~------~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sg 388 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD-EPLLVSGSYDG------TVKVWDPR------TGKCLKSLSGHTGRVYSLIVDSE-NRLLSG 388 (537)
T ss_pred eEEEeccccccEEEEEec-CCEEEEEecCc------eEEEEEhh------hceeeeeecCCcceEEEEEecCc-ceEEee
Confidence 988887 77788888776 44555444443 23344433 35678889999999999988775 789999
Q ss_pred eCCCeEEEEECCCC-ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC--CceeEEEec
Q 021399 165 GEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--RPVNAVTMS 241 (313)
Q Consensus 165 ~~d~~i~lwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~ 241 (313)
+.|+.|++||+.+. +++..+. +|...+..+.+ .+++|++++.|++|++||.+++++++++... ..+.++++.
T Consensus 389 s~D~~IkvWdl~~~~~c~~tl~---~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 389 SLDTTIKVWDLRTKRKCIHTLQ---GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG 463 (537)
T ss_pred eeccceEeecCCchhhhhhhhc---CCccccccccc--ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC
Confidence 99999999999988 6666553 68888876654 4789999999999999999999999998763 345555544
Q ss_pred cCCCEEEEcccccCceeEeeccCCCc
Q 021399 242 PLLDHVVLGGGQDASAVTTTDHRAGK 267 (313)
Q Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (313)
+..+++++.+ +.+..||.+.+.
T Consensus 464 ---~~~il~s~~~-~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 464 ---KEEILCSSDD-GSVKLWDLRSGT 485 (537)
T ss_pred ---cceEEEEecC-CeeEEEecccCc
Confidence 3334444433 334444544433
No 70
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.8e-25 Score=198.75 Aligned_cols=257 Identities=26% Similarity=0.454 Sum_probs=197.4
Q ss_pred cccc-cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEE-ecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 5 LMKG-HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT-YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 5 ~l~~-h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~-~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
.+.+ |...+.|..|. +.++++++.|.+|++|+..++..+.+ +.||.+.|+++++...+.++++|+.|.++++||..
T Consensus 202 ~~~~~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 202 VLLGTDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCS 279 (537)
T ss_pred eecccCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecC
Confidence 3444 44557888887 66999999999999999999998888 99999999999998767899999999999999999
Q ss_pred CCeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
+++++.++. +...+..+...+. ..+.++. +..+.+|++. .+..+..+.+|.++|+++..+ +.++
T Consensus 280 sg~C~~~l~gh~stv~~~~~~~~-~~~sgs~------D~tVkVW~v~------n~~~l~l~~~h~~~V~~v~~~--~~~l 344 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTIDPF-LLVSGSR------DNTVKVWDVT------NGACLNLLRGHTGPVNCVQLD--EPLL 344 (537)
T ss_pred CCcEEEEecCCCceEEEEEccCc-eEeeccC------CceEEEEecc------CcceEEEeccccccEEEEEec--CCEE
Confidence 999998886 3444444433221 1111112 2233444443 344566667799999999988 7899
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC-cEEEEEecCCceeEEEe
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYVTERPVNAVTM 240 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~ 240 (313)
++|+.|++|++||+.+++++..+. +|...|.++.+.+. +.+++|+.|++|++||++++ +|+.++..+..+. -.+
T Consensus 345 vsgs~d~~v~VW~~~~~~cl~sl~---gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v-~~l 419 (537)
T KOG0274|consen 345 VSGSYDGTVKVWDPRTGKCLKSLS---GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLV-SSL 419 (537)
T ss_pred EEEecCceEEEEEhhhceeeeeec---CCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcccc-ccc
Confidence 999999999999999988887664 79999999988765 89999999999999999999 8988887544322 222
Q ss_pred ccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccc-cccceeEEEEC
Q 021399 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINALAFN 297 (313)
Q Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~fs 297 (313)
...++. ++++..|. .+++||.+++.++..+.+ |.+.|+++++.
T Consensus 420 ~~~~~~-Lvs~~aD~-------------~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 420 LLRDNF-LVSSSADG-------------TIKLWDAEEGECLRTLEGRHVGGVSALALG 463 (537)
T ss_pred ccccce-eEeccccc-------------cEEEeecccCceeeeeccCCcccEEEeecC
Confidence 233333 44444443 478899999999999988 78999999987
No 71
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=8.2e-27 Score=193.99 Aligned_cols=240 Identities=17% Similarity=0.297 Sum_probs=179.5
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE 82 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~ 82 (313)
+++.||.++|..++|+++|..++|+|.|+.+++||+++|+++..|.. ...++|+.|+|++ +.|++|+.|+.|+.||++
T Consensus 252 rtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiR 330 (503)
T KOG0282|consen 252 RTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIR 330 (503)
T ss_pred hhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEecc
Confidence 57899999999999999999999999999999999999999877753 3456899999998 799999999999999999
Q ss_pred CCeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
+++.++.+. .-..+..+.|.+++.--+.+++.. .+.+|+.... ..-..+.... .-...++..+|.++.+
T Consensus 331 s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdk-----s~riWe~~~~---v~ik~i~~~~--~hsmP~~~~~P~~~~~ 400 (503)
T KOG0282|consen 331 SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDK-----SVRIWENRIP---VPIKNIADPE--MHTMPCLTLHPNGKWF 400 (503)
T ss_pred chHHHHHHHhhhhheeeeEEccCCceEeeeccCc-----cEEEEEcCCC---ccchhhcchh--hccCcceecCCCCCee
Confidence 998765553 345777888887655444444321 1222221110 0000111111 1223467789999999
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCce--eceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEE
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAV 238 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~ 238 (313)
+.-+.|+.|.++.+...-.+.......+|. +.-+.+.|||||.+|++|+.||.+.+||.++-+.+..+.. .+++..+
T Consensus 401 ~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v 480 (503)
T KOG0282|consen 401 AAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGV 480 (503)
T ss_pred hhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEE
Confidence 999999999999865432222212223564 4456789999999999999999999999999999888864 5789999
Q ss_pred EeccCCCEEEEccccc
Q 021399 239 TMSPLLDHVVLGGGQD 254 (313)
Q Consensus 239 ~~~p~~~~~~~~~~~~ 254 (313)
.|+|...+.+++++=+
T Consensus 481 ~wHP~e~Skvat~~w~ 496 (503)
T KOG0282|consen 481 DWHPVEPSKVATCGWD 496 (503)
T ss_pred EecCCCcceeEecccC
Confidence 9999999888887643
No 72
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.3e-24 Score=193.93 Aligned_cols=189 Identities=20% Similarity=0.249 Sum_probs=144.2
Q ss_pred eeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCe
Q 021399 28 CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK 106 (313)
Q Consensus 28 ~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (313)
|+.++.+++|+......+..+.+|.+.|.+++|+|+ +++|+|||.|++|++||+.++.....
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~----------------- 112 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK----------------- 112 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-----------------
Confidence 566889999998877788899999999999999997 78999999999999999875421000
Q ss_pred EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE-EEeeCCCeEEEEECCCCceeeecc
Q 021399 107 LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESD 185 (313)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~t~~~d~~i~lwd~~~~~~~~~~~ 185 (313)
....++..+.+|...|.++.|+|.+..+ ++++.|+.|+|||+.+++.+..+.
T Consensus 113 ---------------------------~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~ 165 (568)
T PTZ00420 113 ---------------------------EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN 165 (568)
T ss_pred ---------------------------ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe
Confidence 0001233456788899999999988754 789999999999999887655442
Q ss_pred cccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC-Ccee-----EEEeccCCCEEEEcccccC--ce
Q 021399 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVN-----AVTMSPLLDHVVLGGGQDA--SA 257 (313)
Q Consensus 186 ~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~-----~~~~~p~~~~~~~~~~~~~--~~ 257 (313)
|...|.+++|+++|+.|++++.|++|++||+++++++.++..+ ..+. ...|+++++.++++|.++. ..
T Consensus 166 ----~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~ 241 (568)
T PTZ00420 166 ----MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMRE 241 (568)
T ss_pred ----cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccE
Confidence 4567999999999999999999999999999999998887532 2222 2335677777777664432 23
Q ss_pred eEeeccC
Q 021399 258 VTTTDHR 264 (313)
Q Consensus 258 ~~~~~~~ 264 (313)
+.+||.+
T Consensus 242 VkLWDlr 248 (568)
T PTZ00420 242 MKLWDLK 248 (568)
T ss_pred EEEEECC
Confidence 4555544
No 73
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=7.4e-26 Score=187.28 Aligned_cols=234 Identities=23% Similarity=0.372 Sum_probs=183.4
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeE
Q 021399 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~ 86 (313)
++|.+.+.+++.|+||++|++|+.|..|.||+..+.+.++++.+|.+.|.+++|-.....+++++.|++|++|+++....
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 38999999999999999999999999999999999999999999999999999987777899999999999999987655
Q ss_pred EEEe-cCCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 87 LFTF-NFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 87 ~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
+.++ .++..+..++....+..+.+. .+. ..++|.+. .+..+.+.++.+.+-+++|-.+ ..|++|
T Consensus 279 vetlyGHqd~v~~IdaL~reR~vtVGgrDr------T~rlwKi~-------eesqlifrg~~~sidcv~~In~-~HfvsG 344 (479)
T KOG0299|consen 279 VETLYGHQDGVLGIDALSRERCVTVGGRDR------TVRLWKIP-------EESQLIFRGGEGSIDCVAFIND-EHFVSG 344 (479)
T ss_pred HHHHhCCccceeeechhcccceEEeccccc------eeEEEecc-------ccceeeeeCCCCCeeeEEEecc-cceeec
Confidence 4332 344555555555444444333 332 23344442 2345567788888888888754 569999
Q ss_pred eCCCeEEEEECCCCceeeecccc---------cCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC----cEEEEEec
Q 021399 165 GEDAIVRIWDTETGKLLKESDKE---------TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL----ELIKTYVT 231 (313)
Q Consensus 165 ~~d~~i~lwd~~~~~~~~~~~~~---------~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~~~ 231 (313)
+.+|.|.||++..++++...... ..++.+|++++..|..+.+++|+.+|.||+|-+..+ .++..+..
T Consensus 345 SdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~ 424 (479)
T KOG0299|consen 345 SDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL 424 (479)
T ss_pred cCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc
Confidence 99999999999888776543221 112348999999999999999999999999987766 45566666
Q ss_pred CCceeEEEeccCCCEEEEccccc
Q 021399 232 ERPVNAVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 232 ~~~~~~~~~~p~~~~~~~~~~~~ 254 (313)
..-|+.++|++++..++++.|..
T Consensus 425 ~GfVNsl~f~~sgk~ivagiGkE 447 (479)
T KOG0299|consen 425 VGFVNSLAFSNSGKRIVAGIGKE 447 (479)
T ss_pred ccEEEEEEEccCCCEEEEecccc
Confidence 77899999999999888876643
No 74
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=1.2e-25 Score=181.19 Aligned_cols=239 Identities=20% Similarity=0.253 Sum_probs=165.3
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE------------------------------------
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG------------------------------------ 46 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~------------------------------------ 46 (313)
+-.+.+|+++|.|+.||.||.+||||.-+|.|+||...++....
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip 178 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP 178 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECC
Confidence 34789999999999999999999999999999999888765432
Q ss_pred ------EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecC--CCCeeEEEeecC-CeEEEEECCCcee
Q 021399 47 ------TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF--DSPARSVDFAVG-DKLAVITTDPFME 117 (313)
Q Consensus 47 ------~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~ 117 (313)
.+.||..++++-.|.|+|+.++++..||+|++||+.++++...... ......+.+... ..+.....+....
T Consensus 179 ~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~ 258 (399)
T KOG0296|consen 179 SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVAC 258 (399)
T ss_pred CcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEE
Confidence 2458999999999999999999999999999999999998877652 112222322221 1111111111000
Q ss_pred c--cccceeeeeeeCCCCCCCceEEEecCCCC---ceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCcee
Q 021399 118 L--NSAIHVKRIARDPADQGGESVLILKGPQG---RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK 192 (313)
Q Consensus 118 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~ 192 (313)
. .....+...... .... ....+.. .|-.+.++..=+..|+|+-||+|.|||+...++ +.. -.|..
T Consensus 259 ~~~~~sgKVv~~~n~---~~~~---l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~-R~~---c~he~ 328 (399)
T KOG0296|consen 259 GVNNGSGKVVNCNNG---TVPE---LKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL-RHI---CEHED 328 (399)
T ss_pred EEccccceEEEecCC---CCcc---ccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh-hee---ccCCC
Confidence 0 000011000000 0000 0001112 223334444456789999999999999876543 222 24888
Q ss_pred ceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEeccCCCEEEEccc
Q 021399 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 193 ~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~ 252 (313)
.|..+.|-+ ..+|++++.||.|+.||.|+|++..++.. ...|.+.+++|+.+.+++++.
T Consensus 329 ~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 329 GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred ceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecC
Confidence 899999998 78999999999999999999999999974 567999999998887766543
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-26 Score=191.19 Aligned_cols=231 Identities=19% Similarity=0.331 Sum_probs=184.3
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
|.+.+.|. +|.+++|+|.-++=+.....-.+.||+..+....+++.-...-|.+++|..||++|+.|+..|.|+|+|+.
T Consensus 20 ~~~~ke~~-~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 20 PPVHKEHN-SVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred cccccccC-cceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 44455554 69999999976533333333688999998888888888889999999999999999999999999999955
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC-EE
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TI 161 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~i 161 (313)
+.. .+..+.+|+.+++...|+|.++ .+
T Consensus 99 ~r~----------------------------------------------------iLR~~~ah~apv~~~~f~~~d~t~l 126 (487)
T KOG0310|consen 99 SRV----------------------------------------------------ILRQLYAHQAPVHVTKFSPQDNTML 126 (487)
T ss_pred cHH----------------------------------------------------HHHHHhhccCceeEEEecccCCeEE
Confidence 421 1123456888889999998765 56
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCCC-cEEEEEecCCceeEEE
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTL-ELIKTYVTERPVNAVT 239 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~ 239 (313)
++|++|+.+++||+.+... + ....+|.+.|++.+++|... .++|||.||+||+||+++. ..+.++.++.++..+.
T Consensus 127 ~s~sDd~v~k~~d~s~a~v-~--~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl 203 (487)
T KOG0310|consen 127 VSGSDDKVVKYWDLSTAYV-Q--AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVL 203 (487)
T ss_pred EecCCCceEEEEEcCCcEE-E--EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEE
Confidence 7788899999999987663 2 23458999999999998654 7999999999999999987 8889999999999999
Q ss_pred eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhh-hhhccccccccceeEEEECCCCCeeE
Q 021399 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ-EEIGGVKGHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~~~fspdgk~~~ 304 (313)
+-|.+..++.+||+ +++.||..++ +.+..+..|...|+|+.+..|+.++-
T Consensus 204 ~lpsgs~iasAgGn---------------~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 204 ALPSGSLIASAGGN---------------SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred EcCCCCEEEEcCCC---------------eEEEEEecCCceehhhhhcccceEEEEEeecCCceEe
Confidence 99999998888764 3577887643 44455555999999999999997753
No 76
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.6e-26 Score=177.61 Aligned_cols=203 Identities=19% Similarity=0.340 Sum_probs=166.9
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~ 85 (313)
..|+.-|..++|+.|.++|++|+.++.+||+|++..+ +...+.+|.+.|..+-|....+.++|++.|++||+||.+++.
T Consensus 97 f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt 176 (334)
T KOG0278|consen 97 FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT 176 (334)
T ss_pred hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc
Confidence 4588889999999999999999999999999998664 577899999999999998888889999999999999999999
Q ss_pred EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee
Q 021399 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (313)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~ 165 (313)
.++.+.+.+++.++.+++++.++...-......+.... -..+...+. .-.|.+..++|....++.|+
T Consensus 177 ~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaks------------f~~lKs~k~-P~nV~SASL~P~k~~fVaGg 243 (334)
T KOG0278|consen 177 EVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKS------------FGLLKSYKM-PCNVESASLHPKKEFFVAGG 243 (334)
T ss_pred EEEEEecCCCCcceeeccCCCEEEEecCceeEEecccc------------ccceeeccC-ccccccccccCCCceEEecC
Confidence 99999999999999999988777654332222211111 111222221 22567888999999999999
Q ss_pred CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Q 021399 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (313)
Q Consensus 166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~ 224 (313)
+|..++.||..++..+-.. ..+|-+.|.|+.|+|+|...++||.||+|++|....++
T Consensus 244 ed~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 244 EDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred cceEEEEEeccCCceeeec--ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 9999999999999876543 35799999999999999999999999999999876544
No 77
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=5.5e-26 Score=190.54 Aligned_cols=251 Identities=19% Similarity=0.221 Sum_probs=184.2
Q ss_pred CcccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC---------------------------cEEE--------
Q 021399 2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---------------------------ERLG-------- 46 (313)
Q Consensus 2 ~~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~---------------------------~~~~-------- 46 (313)
+++.|++|++.|.++++.|.|.+|+|||.|.+|++||+..- ..+-
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 56889999999999999999999999999999999997631 0000
Q ss_pred ------------------------EecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECCCCe-EEEEec------CCC
Q 021399 47 ------------------------TYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGA-QLFTFN------FDS 94 (313)
Q Consensus 47 ------------------------~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~~~-~~~~~~------~~~ 94 (313)
.-+||...++|.+|+|++ +.|+|++.||++|+||+...+ +..++. ...
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 015899999999999976 589999999999999997543 233332 234
Q ss_pred CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC--ceEEEEEccCCCEEEEeeCCCeEEE
Q 021399 95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG--RINRAVWGPLNRTIISAGEDAIVRI 172 (313)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~i~t~~~d~~i~l 172 (313)
++.++.|.++.+.++..+. ++.++.|+.... .......+-..|.. .|.++.|+++|++|++-|.|+++++
T Consensus 319 ~~tsC~~nrdg~~iAagc~-----DGSIQ~W~~~~~---~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCL-----DGSIQIWDKGSR---TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred CceeeecCCCcchhhhccc-----CCceeeeecCCc---ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 6778889988777555432 334444443110 01112233456766 8999999999999999999999999
Q ss_pred EECCCCc-eeeecccccCceeceEEEEECCCCCEEEEeeC------CCcEEEEECCCCcEEEEEec-CCceeEEEeccCC
Q 021399 173 WDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSL------DKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLL 244 (313)
Q Consensus 173 wd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~ 244 (313)
||+++.+ ++...... .-...-+.++|||+.+.|++|.. -|++.+||..+...+.++.. ...+..+.|||-.
T Consensus 391 WDLrq~kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkL 469 (641)
T KOG0772|consen 391 WDLRQFKKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKL 469 (641)
T ss_pred eeccccccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchh
Confidence 9997654 33322211 12345677899999999999864 47899999999998888753 5568889999999
Q ss_pred CEEEEcccccCceeEeec
Q 021399 245 DHVVLGGGQDASAVTTTD 262 (313)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~ 262 (313)
++++++.|++. ....+|
T Consensus 470 NQi~~gsgdG~-~~vyYd 486 (641)
T KOG0772|consen 470 NQIFAGSGDGT-AHVYYD 486 (641)
T ss_pred hheeeecCCCc-eEEEEC
Confidence 99998877644 333344
No 78
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=195.98 Aligned_cols=242 Identities=25% Similarity=0.370 Sum_probs=192.4
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEe-----------------------------------
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY----------------------------------- 48 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~----------------------------------- 48 (313)
+.+.||...|..++||.+...++||+. +.++||+.++.+++.++
T Consensus 367 i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~ 445 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS 445 (888)
T ss_pred eeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhh
Confidence 577889999999999988888887764 68899998877665543
Q ss_pred -----cCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC-----CeE--------EEEecCCCCeeEEEeecCCeEEEE
Q 021399 49 -----RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-----GAQ--------LFTFNFDSPARSVDFAVGDKLAVI 110 (313)
Q Consensus 49 -----~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 110 (313)
++|++++|+++.+||++.++|||.|.+|++||..- +.. ..++.....+.++.++|+++++++
T Consensus 446 l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV 525 (888)
T KOG0306|consen 446 LVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAV 525 (888)
T ss_pred hhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEE
Confidence 58999999999999999999999999999999632 111 133456678889999999888776
Q ss_pred ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCc
Q 021399 111 TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH 190 (313)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h 190 (313)
+- ++....+..+. +-..-+.+-||.=+|.++.++|+++.++|||.|..|++|-+.-|.+-+.+. +|
T Consensus 526 sL-----LdnTVkVyflD------tlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f---AH 591 (888)
T KOG0306|consen 526 SL-----LDNTVKVYFLD------TLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF---AH 591 (888)
T ss_pred Ee-----ccCeEEEEEec------ceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh---cc
Confidence 42 22222222111 123345677999999999999999999999999999999999988766554 79
Q ss_pred eeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399 191 KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262 (313)
Q Consensus 191 ~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (313)
.+.|+++.|-|+..++.++|.|+.|+-||.+..++++.+. +...+.|++..|.|+.++.++.+ ..+..|.
T Consensus 592 dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD--~sIRlwE 662 (888)
T KOG0306|consen 592 DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHD--KSIRLWE 662 (888)
T ss_pred cCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCC--ceeEeee
Confidence 9999999999999999999999999999999999999986 45679999999999988766432 3344444
No 79
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=3e-26 Score=187.22 Aligned_cols=235 Identities=25% Similarity=0.318 Sum_probs=182.1
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
-+|.|..++|+.+.|.++++++++++.|+.+++|+.+..+...+|.||.+.|+++.|......+++|+.|.+||+||+..
T Consensus 213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k 292 (459)
T KOG0288|consen 213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK 292 (459)
T ss_pred hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh
Confidence 36788889999999999999999999999999999999999999999999999999987766699999999999999987
Q ss_pred CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (313)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t 163 (313)
..+..+..+.. .++.++.+ ...+++
T Consensus 293 ~~C~kt~l~~S-----------------------------------------------------~cnDI~~~--~~~~~S 317 (459)
T KOG0288|consen 293 AYCSKTVLPGS-----------------------------------------------------QCNDIVCS--ISDVIS 317 (459)
T ss_pred hheeccccccc-----------------------------------------------------cccceEec--ceeeee
Confidence 65543322111 11111111 124788
Q ss_pred eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-----CCceeEE
Q 021399 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-----ERPVNAV 238 (313)
Q Consensus 164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~ 238 (313)
|-.|++||.||.++..+.+.+. -.+.|+++..+++|..+.+++.|.++.+.|+++.+....+.. ....+.+
T Consensus 318 gH~DkkvRfwD~Rs~~~~~sv~----~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrv 393 (459)
T KOG0288|consen 318 GHFDKKVRFWDIRSADKTRSVP----LGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRV 393 (459)
T ss_pred cccccceEEEeccCCceeeEee----cCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccccee
Confidence 8899999999999888776654 235899999999999999999999999999999988877753 3357889
Q ss_pred EeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEEE
Q 021399 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQ 309 (313)
Q Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~~ 309 (313)
.|+|++.++++|+.+ +.+++|+..+++.+..+ ...+-..+|++++|+|-|+.+.-..-+
T Consensus 394 vfSpd~~YvaAGS~d--gsv~iW~v~tgKlE~~l----------~~s~s~~aI~s~~W~~sG~~Llsadk~ 452 (459)
T KOG0288|consen 394 VFSPDGSYVAAGSAD--GSVYIWSVFTGKLEKVL----------SLSTSNAAITSLSWNPSGSGLLSADKQ 452 (459)
T ss_pred EECCCCceeeeccCC--CcEEEEEccCceEEEEe----------ccCCCCcceEEEEEcCCCchhhcccCC
Confidence 999999987765443 34556665555554332 112222379999999999987655433
No 80
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.94 E-value=1.7e-25 Score=181.16 Aligned_cols=193 Identities=26% Similarity=0.428 Sum_probs=153.5
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC-------------------------CcEEEEecCCCCceEEEEEC
Q 021399 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-------------------------GERLGTYRGHNGAVWCCDVS 61 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~-------------------------~~~~~~~~~H~~~V~~~~~~ 61 (313)
+||+.+|.+++..++|.+++|||.|..++||+.+. ..++-++.||+.+|.++-|+
T Consensus 190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~ 269 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS 269 (423)
T ss_pred cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence 49999999999999999999999999999998321 12355788999999999999
Q ss_pred CCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE
Q 021399 62 RDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 141 (313)
Q Consensus 62 ~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (313)
+ ...++|+|+|.+|+.||++++..+..+..
T Consensus 270 d-~~v~yS~SwDHTIk~WDletg~~~~~~~~------------------------------------------------- 299 (423)
T KOG0313|consen 270 D-ATVIYSVSWDHTIKVWDLETGGLKSTLTT------------------------------------------------- 299 (423)
T ss_pred C-CCceEeecccceEEEEEeecccceeeeec-------------------------------------------------
Confidence 7 66899999999999999998865433211
Q ss_pred ecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEEC
Q 021399 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDA 220 (313)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~ 220 (313)
...++++..+|..+++++|+.|..|+|||++++.--.......+|+..|.++.|+|... .|+||+.|+++++||+
T Consensus 300 ----~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 300 ----NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred ----CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 12345666777788999999999999999987643222233468999999999999655 5899999999999999
Q ss_pred CCCc-EEEEEe-cCCceeEEEeccCCCEEEEcccccC
Q 021399 221 RTLE-LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDA 255 (313)
Q Consensus 221 ~~~~-~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~ 255 (313)
|+.+ ++..+. +...+.++.|+... .+++||.|.
T Consensus 376 RS~k~plydI~~h~DKvl~vdW~~~~--~IvSGGaD~ 410 (423)
T KOG0313|consen 376 RSTKAPLYDIAGHNDKVLSVDWNEGG--LIVSGGADN 410 (423)
T ss_pred ccCCCcceeeccCCceEEEEeccCCc--eEEeccCcc
Confidence 9876 888886 46679999997632 355555553
No 81
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=1.9e-24 Score=188.60 Aligned_cols=229 Identities=20% Similarity=0.258 Sum_probs=166.6
Q ss_pred ceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe-cCCCCeeEEEeecCCeE-EEEECCCceeccccceeeeeeeCC
Q 021399 54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSPARSVDFAVGDKL-AVITTDPFMELNSAIHVKRIARDP 131 (313)
Q Consensus 54 ~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 131 (313)
.+.+..|-|.++++++|...|.+.++|+.+...+.+. .+...+-+++..|+++- +.++.+.... .|+.....
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVk------fWdf~l~~ 487 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVK------FWDFKLVV 487 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEE------EEeEEEEe
Confidence 4566777788888888888888888888776655443 34566667777775543 3333444333 33322211
Q ss_pred CCCCCc-eEEEec-----CCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCE
Q 021399 132 ADQGGE-SVLILK-----GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH 205 (313)
Q Consensus 132 ~~~~~~-~~~~~~-----~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 205 (313)
..++.+ .+..+. .-...|.++.++|++++++.+--|.++++|-+.+-+..-.+ -||.-+|.|+..|||++.
T Consensus 488 ~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsL---YGHkLPV~smDIS~DSkl 564 (888)
T KOG0306|consen 488 SVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSL---YGHKLPVLSMDISPDSKL 564 (888)
T ss_pred ccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeee---cccccceeEEeccCCcCe
Confidence 111111 111111 11346789999999999999999999999988876544333 489999999999999999
Q ss_pred EEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccc
Q 021399 206 FLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV 284 (313)
Q Consensus 206 l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (313)
++|||.|..|++|-++-|.|-+.+. ++..+.++.|-|....+++ +|.|+ .++.||....+.+..+
T Consensus 565 ivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt-~gKD~-------------kvKqWDg~kFe~iq~L 630 (888)
T KOG0306|consen 565 IVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFT-CGKDG-------------KVKQWDGEKFEEIQKL 630 (888)
T ss_pred EEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEE-ecCcc-------------eEEeechhhhhhheee
Confidence 9999999999999999999988886 4567899999996555444 44443 4678998888899999
Q ss_pred cccccceeEEEECCCCCeeEE
Q 021399 285 KGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 285 ~~h~~~V~~~~fspdgk~~~~ 305 (313)
.+|...|++++.+|+|..+..
T Consensus 631 ~~H~~ev~cLav~~~G~~vvs 651 (888)
T KOG0306|consen 631 DGHHSEVWCLAVSPNGSFVVS 651 (888)
T ss_pred ccchheeeeeEEcCCCCeEEe
Confidence 999999999999999987543
No 82
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.5e-25 Score=175.51 Aligned_cols=242 Identities=17% Similarity=0.262 Sum_probs=175.7
Q ss_pred eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecC
Q 021399 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF 92 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~ 92 (313)
-.|+.|++-|.+||+|..||.|.|||+.+-..-+.+.+|-.+|.+++||++|+.|+|+|.|..|++||+..+.+...+.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf 105 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF 105 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence 57999999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEeecC--CeEEEEECC--Cce-eccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399 93 DSPARSVDFAVG--DKLAVITTD--PFM-ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (313)
Q Consensus 93 ~~~~~~~~~~~~--~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d 167 (313)
.+++..+.|+|. .+.++..-+ +.+ .+....+. -+..+.. ++ -........|.+.|++|++|...
T Consensus 106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d---~d-------ln~sas~~~fdr~g~yIitGtsK 174 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDD---GD-------LNSSASHGVFDRRGKYIITGTSK 174 (405)
T ss_pred cCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCc---cc-------cccccccccccCCCCEEEEecCc
Confidence 999999999884 333333211 111 11100000 0000000 00 00011123578899999999999
Q ss_pred CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC-------cE--EEEEe---cCCce
Q 021399 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-------EL--IKTYV---TERPV 235 (313)
Q Consensus 168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~-------~~--~~~~~---~~~~~ 235 (313)
|.+.++|..+-+++..+...+ ...|..+.++..|.+|+..+.|..||.|+++.. ++ ..+++ ..-+.
T Consensus 175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 999999999877665433221 356888899999999999999999999987631 11 12221 12346
Q ss_pred eEEEeccCCCEEEEcccccCceeEeeccCCCce
Q 021399 236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 268 (313)
Q Consensus 236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (313)
++++|+.+|.+++++. .....+|+|....|.+
T Consensus 253 k~ccfs~dgeYv~a~s-~~aHaLYIWE~~~GsL 284 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGS-ARAHALYIWEKSIGSL 284 (405)
T ss_pred hheeecCCccEEEecc-ccceeEEEEecCCcce
Confidence 7899999998877654 4556666666555443
No 83
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=193.13 Aligned_cols=222 Identities=27% Similarity=0.434 Sum_probs=176.6
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC--cEEEEecCCCCceEEEEE-CCCCCeEEEeeCCCcEEEEEC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDV-SRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~--~~~~~~~~H~~~V~~~~~-~~~~~~l~s~s~D~~v~vWd~ 81 (313)
.+..|.+=|..+....+|+.|+|+|.|.+|++|+...+ -+..+++.|...|.|+++ .+++.+++|||-|+.|++||+
T Consensus 68 sme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDi 147 (735)
T KOG0308|consen 68 SMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDI 147 (735)
T ss_pred hhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEc
Confidence 45668888888888889999999999999999998877 567889999999999999 788889999999999999999
Q ss_pred CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe-cCCCCceEEEEEccCCCE
Q 021399 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ 160 (313)
+++.......++ ...+..+ .|+...|++++.++.+..
T Consensus 148 n~~~~~l~~s~n------------------------------------------~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 148 NTGTATLVASFN------------------------------------------NVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred cCcchhhhhhcc------------------------------------------ccccccCCCCCccceeeeecCCcceE
Confidence 976321110000 0001111 167778999999999999
Q ss_pred EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEE
Q 021399 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVT 239 (313)
Q Consensus 161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~ 239 (313)
|++|+-.+.|++||.++.+.+.++. ||...|+++..+.||..++|+|+||+|++||+..++|+.++. +...+=++.
T Consensus 186 ivsGgtek~lr~wDprt~~kimkLr---GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~ 262 (735)
T KOG0308|consen 186 IVSGGTEKDLRLWDPRTCKKIMKLR---GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQ 262 (735)
T ss_pred EEecCcccceEEeccccccceeeee---ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEe
Confidence 9999999999999999987665553 899999999999999999999999999999999999999986 444567778
Q ss_pred eccCCCEEEEcccccCceeEeeccCCCceeeeee
Q 021399 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF 273 (313)
Q Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (313)
.+|.-.+++.|+. ...++..|.|.......++
T Consensus 263 ~~~sf~~vYsG~r--d~~i~~Tdl~n~~~~tlic 294 (735)
T KOG0308|consen 263 SSPSFTHVYSGGR--DGNIYRTDLRNPAKSTLIC 294 (735)
T ss_pred eCCCcceEEecCC--CCcEEecccCCchhheEee
Confidence 8888888877654 3446677766643333333
No 84
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.4e-25 Score=166.55 Aligned_cols=232 Identities=21% Similarity=0.338 Sum_probs=177.4
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
+..||...|..++.+.|...+++|+.|+.+.+||+++|+++..|++|.++|+.+.|+.+...++|||.|.++++||-++.
T Consensus 54 tYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~ 133 (307)
T KOG0316|consen 54 TYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR 133 (307)
T ss_pred eecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccC
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred --eEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 85 --AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 85 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
++++++. ....+.++.+. +..++..+.+. ..+.+++... .. ....-..+|+++.|+++++..
T Consensus 134 s~ePiQildea~D~V~Si~v~-~heIvaGS~DG------tvRtydiR~G------~l--~sDy~g~pit~vs~s~d~nc~ 198 (307)
T KOG0316|consen 134 SFEPIQILDEAKDGVSSIDVA-EHEIVAGSVDG------TVRTYDIRKG------TL--SSDYFGHPITSVSFSKDGNCS 198 (307)
T ss_pred CCCccchhhhhcCceeEEEec-ccEEEeeccCC------cEEEEEeecc------ee--ehhhcCCcceeEEecCCCCEE
Confidence 4555553 23334444332 23333333332 2222322211 11 111123579999999999999
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceece--EEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC-c-eeE
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTI--TSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-P-VNA 237 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v--~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~-~~~ 237 (313)
+.++-|++|+|.|-.++++++... +|...- ...++.....++++||.||.+.+||+.....+..+.... . +..
T Consensus 199 La~~l~stlrLlDk~tGklL~sYk---Ghkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~d 275 (307)
T KOG0316|consen 199 LASSLDSTLRLLDKETGKLLKSYK---GHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTD 275 (307)
T ss_pred EEeeccceeeecccchhHHHHHhc---ccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEe
Confidence 999999999999999999887665 454433 333566666789999999999999999998888886543 3 678
Q ss_pred EEeccCCCEEEEccccc
Q 021399 238 VTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 238 ~~~~p~~~~~~~~~~~~ 254 (313)
++++|..+.++++++..
T Consensus 276 l~~hp~~~~f~~A~~~~ 292 (307)
T KOG0316|consen 276 LSCHPTMDDFITATGHG 292 (307)
T ss_pred eecccCccceeEecCCc
Confidence 99999988888776543
No 85
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.5e-24 Score=196.30 Aligned_cols=235 Identities=22% Similarity=0.376 Sum_probs=177.8
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC-------C-----------cEEEEecCCCCceEEEEECCCCCe
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-------G-----------ERLGTYRGHNGAVWCCDVSRDSMT 66 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~-------~-----------~~~~~~~~H~~~V~~~~~~~~~~~ 66 (313)
.+..|.+.|.|++|+|||++||+||.|+.|.||..+. + +.+..+++|.+.|..++|+|++.+
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccE
Confidence 4567999999999999999999999999999998762 1 256788999999999999999999
Q ss_pred EEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCC
Q 021399 67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 146 (313)
Q Consensus 67 l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (313)
|+|+|.|++|.|||..+.+ .+..+++|+
T Consensus 144 lvS~s~DnsViiwn~~tF~----------------------------------------------------~~~vl~~H~ 171 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFE----------------------------------------------------LLKVLRGHQ 171 (942)
T ss_pred EEEecccceEEEEccccce----------------------------------------------------eeeeeeccc
Confidence 9999999999999977643 234567899
Q ss_pred CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccC---ceeceEEEEECCCCCEEEEeeC----CCcEEEEE
Q 021399 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG---HKKTITSLAKAADGSHFLTGSL----DKSAKLWD 219 (313)
Q Consensus 147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~s~----dg~i~iwd 219 (313)
+.|..+.|.|.|++|++-++|++|++|.+.+....+.+..... -..-.+.+.|||||.+|++.-. -.++.|.+
T Consensus 172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie 251 (942)
T KOG0973|consen 172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE 251 (942)
T ss_pred ccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe
Confidence 9999999999999999999999999999776555444433222 2345778999999999998643 34678888
Q ss_pred CCCCcEEEEEe-cCCceeEEEeccCC---------------CE-EEEcccccCceeEeeccCCCceeeeeeehhhhhhhc
Q 021399 220 ARTLELIKTYV-TERPVNAVTMSPLL---------------DH-VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG 282 (313)
Q Consensus 220 ~~~~~~~~~~~-~~~~~~~~~~~p~~---------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (313)
..+.+.-..+. |..++.++.|+|.- .+ +++.|+.|. . +.+|.....+++-
T Consensus 252 R~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr-S------------lSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 252 RGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR-S------------LSVWNTALPRPLF 318 (942)
T ss_pred cCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc-c------------EEEEecCCCCchh
Confidence 87777666664 56689999999831 11 333344332 2 3345544344432
Q ss_pred ccc-ccccceeEEEECCCCCeeE
Q 021399 283 GVK-GHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 283 ~~~-~h~~~V~~~~fspdgk~~~ 304 (313)
..+ --+..|.+++|+|||..+=
T Consensus 319 vi~~lf~~SI~DmsWspdG~~Lf 341 (942)
T KOG0973|consen 319 VIHNLFNKSIVDMSWSPDGFSLF 341 (942)
T ss_pred hhhhhhcCceeeeeEcCCCCeEE
Confidence 111 1257999999999987743
No 86
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.4e-25 Score=169.71 Aligned_cols=240 Identities=23% Similarity=0.327 Sum_probs=174.3
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC---cEEEEecCCCCceEEEEECC--CCCeEEEeeCCCcEEEE
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLW 79 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~---~~~~~~~~H~~~V~~~~~~~--~~~~l~s~s~D~~v~vW 79 (313)
+-..|++-|..+..+-.|++|+|++.|++|||+...+. .++.+|+||+++|+.++|.. -|++|+|++.||.|.||
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 45679999999888889999999999999999988765 46789999999999999964 58999999999999999
Q ss_pred ECCCCeEEEEe---cCCCCeeEEEeecC---CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399 80 NVETGAQLFTF---NFDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (313)
Q Consensus 80 d~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (313)
.-+.+.-.... .+...+.++.|.|- -.+.+.+.+....+.. .. .+..-........|.-.+++++
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~------~~---~~g~w~t~ki~~aH~~GvnsVs 156 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLT------YD---SSGGWTTSKIVFAHEIGVNSVS 156 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEE------Ec---CCCCccchhhhhccccccceee
Confidence 98776322221 24567788888773 2344444444332211 11 0011122334467888889999
Q ss_pred EccC---C-----------CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCC----CEEEEeeCCCcE
Q 021399 154 WGPL---N-----------RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG----SHFLTGSLDKSA 215 (313)
Q Consensus 154 ~~~~---~-----------~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~----~~l~s~s~dg~i 215 (313)
|.|. | ++|++||.|..|+||+..++.=..+ ....+|.+.|+.++|.|.- .+|||+|.||++
T Consensus 157 wapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e-~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~v 235 (299)
T KOG1332|consen 157 WAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE-RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTV 235 (299)
T ss_pred ecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhh-hhhhhcchhhhhhhhccccCCCceeeEEecCCCcE
Confidence 9886 3 5699999999999999877532211 1145799999999999864 479999999999
Q ss_pred EEEECCCC-cE-EEEEe--cCCceeEEEeccCCCEEEEccccc
Q 021399 216 KLWDARTL-EL-IKTYV--TERPVNAVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 216 ~iwd~~~~-~~-~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~ 254 (313)
.||..+.. +. ..++. .+..+-.++|++.|+.+.+++|+.
T Consensus 236 iIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 236 IIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred EEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCc
Confidence 99976532 11 11111 244688899999999988887643
No 87
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.5e-26 Score=200.77 Aligned_cols=238 Identities=24% Similarity=0.383 Sum_probs=197.2
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
....|...|.|+..-..++.+++|+.|..+-+|.......+..|.+|+.+|-++.|+++..++++|+.||+||+||++++
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA 102 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA 102 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhh
Confidence 45678888999988778899999999999999988877777789999999999999999999999999999999999876
Q ss_pred eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
+.+. .+.+|...+.++.|+|-+.++++|
T Consensus 103 k~vr----------------------------------------------------tLtgh~~~~~sv~f~P~~~~~a~g 130 (825)
T KOG0267|consen 103 KIVR----------------------------------------------------TLTGHLLNITSVDFHPYGEFFASG 130 (825)
T ss_pred hhhh----------------------------------------------------hhhccccCcceeeeccceEEeccc
Confidence 5332 234566778889999999999999
Q ss_pred eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccC
Q 021399 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPL 243 (313)
Q Consensus 165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~ 243 (313)
+.|+.+++||.+...+..... +|...+..+.|+|+|.++++|+.|.+++|||+..++.+.+|. ++.++..+.|+|.
T Consensus 131 Stdtd~~iwD~Rk~Gc~~~~~---s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~ 207 (825)
T KOG0267|consen 131 STDTDLKIWDIRKKGCSHTYK---SHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPL 207 (825)
T ss_pred cccccceehhhhccCceeeec---CCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCch
Confidence 999999999998666665543 588899999999999999999999999999999999999987 6788999999996
Q ss_pred CCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEEEEee
Q 021399 244 LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQINV 312 (313)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~~~~~ 312 (313)
. .++..|+.|. .++|||.++...+...+.-...|-+++|+|||+.+ ++-+|+++
T Consensus 208 e-~Lla~Gs~d~-------------tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~-~~G~q~sl 261 (825)
T KOG0267|consen 208 E-VLLAPGSSDR-------------TVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIV-LSGEQISL 261 (825)
T ss_pred h-hhhccCCCCc-------------eeeeeccceeEEeeccCCccCCceeeeecCCceee-ecCchhhh
Confidence 4 3444455443 35788877666666666667899999999999875 34445443
No 88
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=5.1e-25 Score=169.69 Aligned_cols=195 Identities=21% Similarity=0.362 Sum_probs=155.3
Q ss_pred cccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECC
Q 021399 5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~ 82 (313)
.++.|+.+|+++.|++. +..++++|.|++||+|+...+..+.+|.||+.-|....|+|. .++|+++|.|+++++||++
T Consensus 99 ~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr 178 (311)
T KOG0277|consen 99 KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVR 178 (311)
T ss_pred HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEec
Confidence 78899999999999975 567788899999999999999999999999999999999985 6799999999999999987
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc-CCCEE
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTI 161 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~i 161 (313)
... +. +.++.|..+|.++.|+. +.+.+
T Consensus 179 ~~g---------------------------------------------------k~-~~i~ah~~Eil~cdw~ky~~~vl 206 (311)
T KOG0277|consen 179 SPG---------------------------------------------------KF-MSIEAHNSEILCCDWSKYNHNVL 206 (311)
T ss_pred CCC---------------------------------------------------ce-eEEEeccceeEeecccccCCcEE
Confidence 521 11 12455667788888874 45678
Q ss_pred EEeeCCCeEEEEECCCCc-eeeecccccCceeceEEEEECCC-CCEEEEeeCCCcEEEEECCCCc-EEEEEe-cCCceeE
Q 021399 162 ISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLE-LIKTYV-TERPVNA 237 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~~-~~~~~~-~~~~~~~ 237 (313)
+||+.|+.||.||+++-+ ++. ...+|.-.|+.+.|||- .+.|||++.|.+++|||...+. ++.+.. +.+-+..
T Consensus 207 ~Tg~vd~~vr~wDir~~r~pl~---eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g 283 (311)
T KOG0277|consen 207 ATGGVDNLVRGWDIRNLRTPLF---ELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCG 283 (311)
T ss_pred EecCCCceEEEEehhhccccce---eecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEec
Confidence 999999999999997643 333 33589999999999996 4579999999999999988654 333333 3456788
Q ss_pred EEeccCCCEEEEccccc
Q 021399 238 VTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 238 ~~~~p~~~~~~~~~~~~ 254 (313)
+.|++.....++..|=|
T Consensus 284 ~Dws~~~~~~vAs~gWD 300 (311)
T KOG0277|consen 284 LDWSLFDPGQVASTGWD 300 (311)
T ss_pred cccccccCceeeecccc
Confidence 88998866666655433
No 89
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=6.4e-24 Score=175.88 Aligned_cols=267 Identities=24% Similarity=0.321 Sum_probs=193.5
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEE----EE------------e--cCCCCceEEEEECCCCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL----GT------------Y--RGHNGAVWCCDVSRDSM 65 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~----~~------------~--~~H~~~V~~~~~~~~~~ 65 (313)
+.+..|.-+|.|+.++|++++.++++.|++|.-|+..+++.. .+ . ++|.+.+.+++.++||+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk 215 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK 215 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence 466789999999999999999999999999999998887632 11 1 37889999999999999
Q ss_pred eEEEeeCCCcEEEEECCCCeEEEEec-CCCCeeEEEeecCC-eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec
Q 021399 66 TLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 143 (313)
Q Consensus 66 ~l~s~s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (313)
+|++|+.|..|.||+..+.+.+..+. +..++.++.|..+. .+...+.+. .+.+|.+.. ...+..+-
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Dr------svkvw~~~~------~s~vetly 283 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADR------SVKVWSIDQ------LSYVETLY 283 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCC------ceEEEehhH------hHHHHHHh
Confidence 99999999999999999999887754 45677788777653 333333332 223333221 22344567
Q ss_pred CCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC
Q 021399 144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 223 (313)
Q Consensus 144 ~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~ 223 (313)
+|+..|..+.....++.+-+|+.|.++++|++..-..+ +. .+|.+.+-|++|-.+ .++++||.||.|.+|++.+.
T Consensus 284 GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql--if--rg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL--IF--RGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred CCccceeeechhcccceEEeccccceeEEEecccccee--ee--eCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc
Confidence 89999988877776776666679999999998443221 11 257788999998755 57999999999999999999
Q ss_pred cEEEEEecCC-------------ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhh----hhhccccc
Q 021399 224 ELIKTYVTER-------------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ----EEIGGVKG 286 (313)
Q Consensus 224 ~~~~~~~~~~-------------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 286 (313)
+++.+....+ =+++++..|..+.++.++++ +. +++|....+ +.+..++
T Consensus 359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~--G~------------vrLW~i~~g~r~i~~l~~ls- 423 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS--GC------------VRLWKIEDGLRAINLLYSLS- 423 (479)
T ss_pred CceeEeeccccccCCccccccccceeeeEecccCceEEecCCC--Cc------------eEEEEecCCccccceeeecc-
Confidence 9887764211 14567777776654443322 22 345554332 2233444
Q ss_pred cccceeEEEECCCCCe
Q 021399 287 HFGPINALAFNPDGKR 302 (313)
Q Consensus 287 h~~~V~~~~fspdgk~ 302 (313)
-.+-|++|+|+++||.
T Consensus 424 ~~GfVNsl~f~~sgk~ 439 (479)
T KOG0299|consen 424 LVGFVNSLAFSNSGKR 439 (479)
T ss_pred cccEEEEEEEccCCCE
Confidence 4789999999999993
No 90
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.3e-24 Score=168.33 Aligned_cols=217 Identities=21% Similarity=0.320 Sum_probs=164.3
Q ss_pred cccccccceeEEEEccCCC--EEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 5 LMKGHERPLTYLKYNKDGD--LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~--~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
.|-.|.+.|++|.|.+... .|+||+.||.|.+|+...=++++++++|.+.|+.++.+|.+++.+|.|.|+.++.||+-
T Consensus 78 ~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 78 ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence 5677999999999998876 99999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 83 TGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
+++..+..+.......+.|.+ ++.+++...+... .+.+.. ..+......+.++.++.|-. +..+
T Consensus 158 ~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~-------i~q~d~-------A~v~~~i~~~~r~l~~~~l~-~~~L 222 (362)
T KOG0294|consen 158 RGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKID-------IYQLDN-------ASVFREIENPKRILCATFLD-GSEL 222 (362)
T ss_pred cCccceeeccCCcceeeEEcCCCCEEEEEeccEEE-------EEeccc-------HhHhhhhhccccceeeeecC-CceE
Confidence 998888777777677788887 4556665544321 111000 00000001112344555543 4578
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEE--CCCCCEEEEeeCCCcEEEEECCCC-----cEEEEEecCCc
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK--AADGSHFLTGSLDKSAKLWDARTL-----ELIKTYVTERP 234 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~ 234 (313)
++|++|+.|++||..+..++..+ .+|...|.++.+ .|++.+|+|+|+||.|++||+++. +++..+.....
T Consensus 223 ~vG~d~~~i~~~D~ds~~~~~~~---~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~R 299 (362)
T KOG0294|consen 223 LVGGDNEWISLKDTDSDTPLTEF---LAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVR 299 (362)
T ss_pred EEecCCceEEEeccCCCccceee---ecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCc
Confidence 99999999999999887766655 379999999873 467889999999999999999876 34444444444
Q ss_pred eeEEE
Q 021399 235 VNAVT 239 (313)
Q Consensus 235 ~~~~~ 239 (313)
++|+.
T Consensus 300 ltCl~ 304 (362)
T KOG0294|consen 300 LTCLR 304 (362)
T ss_pred cceee
Confidence 44443
No 91
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.9e-25 Score=191.87 Aligned_cols=218 Identities=20% Similarity=0.306 Sum_probs=168.1
Q ss_pred EEEEc-cCCCEEEEeeCCCCeEEEeCCC---CcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399 15 YLKYN-KDGDLLFSCAKDHTPTVWFADN---GERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFT 89 (313)
Q Consensus 15 ~~~fs-~~g~~l~s~s~d~~i~iw~~~~---~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~~~ 89 (313)
.|.|. -+.++||+++..|.|.+||+.. .+++..|..|+-.|.++.|++. ..+|+|||+||+||+||++..+...+
T Consensus 92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t 171 (839)
T KOG0269|consen 92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST 171 (839)
T ss_pred hcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc
Confidence 45665 3467999999999999999987 5667789999999999999875 46999999999999999987654322
Q ss_pred ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC-CCEEEEeeCCC
Q 021399 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDA 168 (313)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~t~~~d~ 168 (313)
+ .+....|.++.|+|. +..|+++.+.|
T Consensus 172 ~----------------------------------------------------~~nSESiRDV~fsp~~~~~F~s~~dsG 199 (839)
T KOG0269|consen 172 F----------------------------------------------------RSNSESIRDVKFSPGYGNKFASIHDSG 199 (839)
T ss_pred c----------------------------------------------------cccchhhhceeeccCCCceEEEecCCc
Confidence 1 112345667778765 56889999999
Q ss_pred eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEEecCCceeEEEeccCCCE
Q 021399 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE--LIKTYVTERPVNAVTMSPLLDH 246 (313)
Q Consensus 169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~p~~~~ 246 (313)
.+++||++.... ......+|++.|.++.|+|++.+||||+.|++|+|||+.+.+ ++.++....++..|.|-|...+
T Consensus 200 ~lqlWDlRqp~r--~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 200 YLQLWDLRQPDR--CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred eEEEeeccCchh--HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 999999986543 223345799999999999999999999999999999998654 4555666789999999999876
Q ss_pred EEEcccc-cCceeEeeccCCCceeeeeeehh-hhhhhccccccccceeEEEECC
Q 021399 247 VVLGGGQ-DASAVTTTDHRAGKFEAKFFDKI-LQEEIGGVKGHFGPINALAFNP 298 (313)
Q Consensus 247 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~~~fsp 298 (313)
.+++++. ++..| ++||.. .-.+...+..|..-|+.++|..
T Consensus 278 hLAtcsmv~dtsV------------~VWDvrRPYIP~~t~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 278 HLATCSMVVDTSV------------HVWDVRRPYIPYATFLEHTDSVTGIAWDS 319 (839)
T ss_pred hhhhhhccccceE------------EEEeeccccccceeeeccCccccceeccC
Confidence 6665432 33444 445542 2334556778999999999865
No 92
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=9.7e-25 Score=173.81 Aligned_cols=231 Identities=19% Similarity=0.343 Sum_probs=183.1
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec-CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
+..|.++|.|+.||.|.++|++|+.||.|+||.+.+|.++..|+ +|...|+|+.|+.|+..++|+|.|.++++--+.+|
T Consensus 259 fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG 338 (508)
T KOG0275|consen 259 FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG 338 (508)
T ss_pred eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc
Confidence 45688999999999999999999999999999999999999987 89999999999999999999999999999877766
Q ss_pred eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
++ +..+.||.+.|+.+.|.++|.+++++
T Consensus 339 K~----------------------------------------------------LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 339 KC----------------------------------------------------LKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred hh----------------------------------------------------HHHhcCccccccceEEcCCCCeEEEe
Confidence 53 23456788899999999999999999
Q ss_pred eCCCeEEEEECCCCceeeecccccCceeceEEEEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEEec----CCceeEEE
Q 021399 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYVT----ERPVNAVT 239 (313)
Q Consensus 165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~ 239 (313)
+.||+|++|+.++..++.++... +....|.++-.-| +..+++.+...+++.+.++. |+.++++.. ...-.+++
T Consensus 367 SsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~ 444 (508)
T KOG0275|consen 367 SSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAI 444 (508)
T ss_pred cCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEE
Confidence 99999999999999998887643 4566777776555 55678999999999999985 677777753 23445667
Q ss_pred eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~ 304 (313)
.+|.|+.++..| . +..+|.+....|++|.. +.-|...|..++-+|....+|
T Consensus 445 lSpkGewiYcig-E-D~vlYCF~~~sG~LE~t------------l~VhEkdvIGl~HHPHqNllA 495 (508)
T KOG0275|consen 445 LSPKGEWIYCIG-E-DGVLYCFSVLSGKLERT------------LPVHEKDVIGLTHHPHQNLLA 495 (508)
T ss_pred ecCCCcEEEEEc-c-CcEEEEEEeecCceeee------------eecccccccccccCcccchhh
Confidence 899999887654 3 34455555555555432 234566666666666655544
No 93
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.7e-23 Score=164.64 Aligned_cols=210 Identities=19% Similarity=0.297 Sum_probs=160.0
Q ss_pred cccccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEE----------E-----EecCCCCceEEEEECC-CCCeE
Q 021399 5 LMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERL----------G-----TYRGHNGAVWCCDVSR-DSMTL 67 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~----------~-----~~~~H~~~V~~~~~~~-~~~~l 67 (313)
..+.|.++|+.|...+ .|++++||+.||.|-+||+++.... . .-.+|+-+|..+-|-| |.-.|
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 3467999999999987 5899999999999999999865411 0 1136888899988877 44588
Q ss_pred EEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCC---eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC
Q 021399 68 ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGD---KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 144 (313)
Q Consensus 68 ~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (313)
.|+|-|.++||||..+-+....+.+...+.+-.++|-. .++++.++. ..+++-++ .++.....+.|
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~-----~~VrLCDi------~SGs~sH~LsG 186 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRD-----VQVRLCDI------ASGSFSHTLSG 186 (397)
T ss_pred ecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCC-----CcEEEEec------cCCcceeeecc
Confidence 99999999999999999888888888777777777622 233332221 11222222 24555667899
Q ss_pred CCCceEEEEEccCCCE-EEEeeCCCeEEEEECCCC-ceeeecc-----------cccCceeceEEEEECCCCCEEEEeeC
Q 021399 145 PQGRINRAVWGPLNRT-IISAGEDAIVRIWDTETG-KLLKESD-----------KETGHKKTITSLAKAADGSHFLTGSL 211 (313)
Q Consensus 145 ~~~~i~~~~~~~~~~~-i~t~~~d~~i~lwd~~~~-~~~~~~~-----------~~~~h~~~v~~~~~s~~~~~l~s~s~ 211 (313)
|.+.|..+.|+|..++ +++|+.||.|++||++.. .++..+. ....|.+.+..++|+.++.++++++.
T Consensus 187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence 9999999999998765 578999999999998643 2332222 13468899999999999999999999
Q ss_pred CCcEEEEECCCCcE
Q 021399 212 DKSAKLWDARTLEL 225 (313)
Q Consensus 212 dg~i~iwd~~~~~~ 225 (313)
|..+++|+...|+.
T Consensus 267 d~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 267 DDRIRVWNMESGRN 280 (397)
T ss_pred ccceEEeecccCcc
Confidence 99999999988764
No 94
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.1e-22 Score=159.33 Aligned_cols=268 Identities=15% Similarity=0.194 Sum_probs=195.9
Q ss_pred cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (313)
Q Consensus 9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~ 88 (313)
.++.|..+.|+|.+..|+.++.||.+++|++........+ -|.+++.+++|.++ ...++|+.||.|+.+|+.+++..+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~ 89 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQ 89 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCccee
Confidence 4778999999999999999999999999999887555444 38899999999875 468899999999999999998888
Q ss_pred EecCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399 89 TFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (313)
Q Consensus 89 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d 167 (313)
...+..++.++...+ .+.++.++.+..+.++.... ...+..+. ..++|.++. -.++.|+.|+.|
T Consensus 90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~------------~~~~~~~d-~~kkVy~~~--v~g~~LvVg~~~ 154 (323)
T KOG1036|consen 90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRN------------KVVVGTFD-QGKKVYCMD--VSGNRLVVGTSD 154 (323)
T ss_pred eccCCCceEEEEeeccCCeEEEcccCccEEEEeccc------------cccccccc-cCceEEEEe--ccCCEEEEeecC
Confidence 888888999998886 45666666665444332211 00111111 122455443 346789999999
Q ss_pred CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc----EEEEEe----------cCC
Q 021399 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE----LIKTYV----------TER 233 (313)
Q Consensus 168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~----------~~~ 233 (313)
..+.+||+++...... ...++-+-.++|+++-|++.=.+++|.||.|.+=.++..+ .-..+. .-.
T Consensus 155 r~v~iyDLRn~~~~~q-~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQ-RRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred ceEEEEEcccccchhh-hccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 9999999986543221 1224567789999999988889999999998875554431 111121 123
Q ss_pred ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
||++++|+|-.+.++++| .|+ .+.+||....+.+..+.....-|.+++|+-||..+|+-.+
T Consensus 234 PVNai~Fhp~~~tfaTgG-sDG-------------~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGG-SDG-------------IVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EeceeEeccccceEEecC-CCc-------------eEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence 799999999976665554 443 2456887777888877766777999999999999997654
No 95
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.1e-22 Score=181.25 Aligned_cols=275 Identities=17% Similarity=0.245 Sum_probs=207.0
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC-cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~-~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~ 85 (313)
-+|+.+-+.++|.|+|++|++++.||.|++|+.... +...++.-|...|.+++.. ++.|++|+.+++|.++...+++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 369999999999999999999999999999986655 4444455478888888764 4589999999999999998876
Q ss_pred EEEE-ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 86 QLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
.-.. ..+..++..+.+..+++.+++.++.+.. .+.+. ........+.+|.++|.++.++|.++++|+.
T Consensus 88 ~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~v-----K~~~~------~D~s~~~~lrgh~apVl~l~~~p~~~fLAvs 156 (933)
T KOG1274|consen 88 EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAV-----KLLNL------DDSSQEKVLRGHDAPVLQLSYDPKGNFLAVS 156 (933)
T ss_pred ccceeeeeeccceEEEEecCCcEEEeecCceeE-----EEEec------cccchheeecccCCceeeeeEcCCCCEEEEE
Confidence 5432 2456788888888877777766553221 11110 0123456778999999999999999999999
Q ss_pred eCCCeEEEEECCCCceeeecccccCc-----eeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec---CCcee
Q 021399 165 GEDAIVRIWDTETGKLLKESDKETGH-----KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---ERPVN 236 (313)
Q Consensus 165 ~~d~~i~lwd~~~~~~~~~~~~~~~h-----~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~ 236 (313)
+-||.|++||+.++.+..+....... ...+..++|+|+|..++..+.|+.|++|+..+.+....+.. .....
T Consensus 157 s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~ 236 (933)
T KOG1274|consen 157 SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFS 236 (933)
T ss_pred ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceE
Confidence 99999999999988765443322111 23456789999999999999999999999999988877753 33488
Q ss_pred EEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEEEEee
Q 021399 237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQINV 312 (313)
Q Consensus 237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~~~~~ 312 (313)
.+.|+|.|.+++++.-+ +.+ .+||..+-.. ++ -...|.+++|.|++..+.|.+++++.
T Consensus 237 ~~~wsPnG~YiAAs~~~--g~I------------~vWnv~t~~~-~~---~~~~Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 237 DLQWSPNGKYIAASTLD--GQI------------LVWNVDTHER-HE---FKRAVCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred EEEEcCCCcEEeeeccC--CcE------------EEEecccchh-cc---ccceeEEEecCCCCCeeEEEeecccc
Confidence 89999999988765432 223 3444433111 11 24699999999999999999998864
No 96
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=4.9e-24 Score=176.34 Aligned_cols=248 Identities=23% Similarity=0.322 Sum_probs=178.6
Q ss_pred cccccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcE----------EEEecCCCCceEEEEECCCCC-eEEEeeCCC
Q 021399 7 KGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGER----------LGTYRGHNGAVWCCDVSRDSM-TLITGSADQ 74 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~----------~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~ 74 (313)
-.|.+.|+.+++-|... .+++.+..+.|.|||..+..- -.++.+|+++=++++|++... .+++++.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 35888999999999875 555567889999999774321 127899999888899998654 789999999
Q ss_pred cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE
Q 021399 75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (313)
Q Consensus 75 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (313)
+|++||+...... .....+...+.+|...|..++|
T Consensus 201 ~i~lwdi~~~~~~---------------------------------------------~~~~~p~~~~~~h~~~VeDV~~ 235 (422)
T KOG0264|consen 201 TICLWDINAESKE---------------------------------------------DKVVDPKTIFSGHEDVVEDVAW 235 (422)
T ss_pred cEEEEeccccccC---------------------------------------------CccccceEEeecCCcceehhhc
Confidence 9999998643210 0011234566789999999999
Q ss_pred ccCC-CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC-CCEEEEeeCCCcEEEEECCCC-cEEEEEe-
Q 021399 155 GPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTL-ELIKTYV- 230 (313)
Q Consensus 155 ~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~-~~~~~~~- 230 (313)
++.. ..|+++++|+.+.|||++++ ..+......+|...+.|++|.|- +..|||||.|++|.+||+|.. +++.++.
T Consensus 236 h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~ 314 (422)
T KOG0264|consen 236 HPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG 314 (422)
T ss_pred cccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC
Confidence 9864 57889999999999999963 22222334579999999999985 556889999999999999985 4555554
Q ss_pred cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhh---hhhhccccccccceeEEEECCCCCe
Q 021399 231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL---QEEIGGVKGHFGPINALAFNPDGKR 302 (313)
Q Consensus 231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~V~~~~fspdgk~ 302 (313)
+...+..|.|+|....+++++|.|.. +-+||...-.-+. -++... .+.+-.--||...|.++.|+|+.-.
T Consensus 315 H~dev~~V~WSPh~etvLASSg~D~r-l~vWDls~ig~eq-~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW 387 (422)
T KOG0264|consen 315 HEDEVFQVEWSPHNETVLASSGTDRR-LNVWDLSRIGEEQ-SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW 387 (422)
T ss_pred CCcceEEEEeCCCCCceeEecccCCc-EEEEecccccccc-ChhhhccCCcceeEEecCcccccccccCCCCCCe
Confidence 45679999999999999988876643 3445532211111 011111 1112234589999999999999655
No 97
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=4.9e-22 Score=168.17 Aligned_cols=266 Identities=17% Similarity=0.143 Sum_probs=180.0
Q ss_pred ccccccceeEEEEccCCCEE-EEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEE-EeeCCCcEEEEECCC
Q 021399 6 MKGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVET 83 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l-~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~~v~vWd~~~ 83 (313)
+.+|. .+.+++|+|+|+.+ ++++.|+.|++||..+++....+..+.. +..++|+|+++.++ +++.|+.+++||+.+
T Consensus 27 ~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 27 FPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred EECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 34443 46789999999977 5677889999999999988877776544 46788999998664 556789999999998
Q ss_pred CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (313)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t 163 (313)
.+.+..+........+.+.+++..++....... ....++. .......... .......+.|+|+++.++.
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~----~~~~~d~------~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 105 RKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTN----MAHFIDT------KTYEIVDNVL-VDQRPRFAEFTADGKELWV 173 (300)
T ss_pred CeEEeEeeCCCCcceEEECCCCCEEEEEecCCC----eEEEEeC------CCCeEEEEEE-cCCCccEEEECCCCCEEEE
Confidence 877666654445567888887776655432100 0111111 1111211111 1223467889999988754
Q ss_pred -eeCCCeEEEEECCCCceeeeccccc--Cc--eeceEEEEECCCCCEEEE-eeCCCcEEEEECCCCcEEEEEecCCceeE
Q 021399 164 -AGEDAIVRIWDTETGKLLKESDKET--GH--KKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLELIKTYVTERPVNA 237 (313)
Q Consensus 164 -~~~d~~i~lwd~~~~~~~~~~~~~~--~h--~~~v~~~~~s~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~ 237 (313)
+..++.|++||+.+++.+..+.... .+ ......++++|++++++. .+.++.+.+||+++++.+..+.....+.+
T Consensus 174 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~ 253 (300)
T TIGR03866 174 SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQ 253 (300)
T ss_pred EcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcce
Confidence 4568999999999887665443110 01 112356889999998554 44567899999999988776665667889
Q ss_pred EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC
Q 021399 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298 (313)
Q Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp 298 (313)
++|+|+++.++++.+.++ ++.+||..+++.+..+... +..+.|+|+|
T Consensus 254 ~~~~~~g~~l~~~~~~~~-------------~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 254 LAFTPDEKYLLTTNGVSN-------------DVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEECCCCCEEEEEcCCCC-------------eEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 999999998887654332 3456666666666666543 5558999886
No 98
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1e-23 Score=186.38 Aligned_cols=201 Identities=23% Similarity=0.349 Sum_probs=161.5
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~ 83 (313)
.++||.+.|..|.||.+ .+|+|+|-|++||+|+....+++++|. |...|+|++|+| |.++|+||+-|++||||++.+
T Consensus 364 ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d 441 (712)
T KOG0283|consen 364 EFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD 441 (712)
T ss_pred hhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEeecCc
Confidence 78999999999999965 599999999999999999999999995 999999999999 567999999999999999876
Q ss_pred CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (313)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t 163 (313)
.+.+. +..-..-|+.+++.|+|+..+.
T Consensus 442 ~~Vv~-----------------------------------------------------W~Dl~~lITAvcy~PdGk~avI 468 (712)
T KOG0283|consen 442 KKVVD-----------------------------------------------------WNDLRDLITAVCYSPDGKGAVI 468 (712)
T ss_pred CeeEe-----------------------------------------------------ehhhhhhheeEEeccCCceEEE
Confidence 54321 0111235788999999999999
Q ss_pred eeCCCeEEEEECCCCceeeecccc------cCceeceEEEEECCCC-CEEEEeeCCCcEEEEECCCCcEEEEEec---CC
Q 021399 164 AGEDAIVRIWDTETGKLLKESDKE------TGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYVT---ER 233 (313)
Q Consensus 164 ~~~d~~i~lwd~~~~~~~~~~~~~------~~h~~~v~~~~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~ 233 (313)
|+.+|.+++|++..-+........ ..|. .|+.+.|.|.. +.++..+.|..|||+|.++..++..+.. ..
T Consensus 469 Gt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~ 547 (712)
T KOG0283|consen 469 GTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS 547 (712)
T ss_pred EEeccEEEEEEccCCeEEEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC
Confidence 999999999998876654432211 1133 79999888643 3588889999999999988777777653 33
Q ss_pred ceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399 234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDH 263 (313)
Q Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (313)
.....+|+.+|.+++.++ ++..||+|+.
T Consensus 548 SQ~~Asfs~Dgk~IVs~s--eDs~VYiW~~ 575 (712)
T KOG0283|consen 548 SQISASFSSDGKHIVSAS--EDSWVYIWKN 575 (712)
T ss_pred cceeeeEccCCCEEEEee--cCceEEEEeC
Confidence 456788999999988765 6777888874
No 99
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=5.7e-23 Score=162.04 Aligned_cols=239 Identities=18% Similarity=0.271 Sum_probs=168.1
Q ss_pred CcccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC--eEEEeeCCCcEEEE
Q 021399 2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM--TLITGSADQTAKLW 79 (313)
Q Consensus 2 ~~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~--~l~s~s~D~~v~vW 79 (313)
.|.....|.++|.+++|+.||..+++|+.|+.+++||+.++ +..++..|.++|.++.|-+... .|+|||.|+++|.|
T Consensus 64 ~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfW 142 (347)
T KOG0647|consen 64 VPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFW 142 (347)
T ss_pred cchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeec
Confidence 36678889999999999999999999999999999999999 5668889999999999976544 89999999999999
Q ss_pred ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCC-CCceEEEEEccCC
Q 021399 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLN 158 (313)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~ 158 (313)
|++...++.++........++... .++++.+.. ..+.++.+...+.. ....+.+ .-.+.+++..++.
T Consensus 143 D~R~~~pv~t~~LPeRvYa~Dv~~--pm~vVata~-----r~i~vynL~n~~te-----~k~~~SpLk~Q~R~va~f~d~ 210 (347)
T KOG0647|consen 143 DTRSSNPVATLQLPERVYAADVLY--PMAVVATAE-----RHIAVYNLENPPTE-----FKRIESPLKWQTRCVACFQDK 210 (347)
T ss_pred ccCCCCeeeeeeccceeeehhccC--ceeEEEecC-----CcEEEEEcCCCcch-----hhhhcCcccceeeEEEEEecC
Confidence 999888877766544444333222 222222110 11111111111100 0000111 1235677777777
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecccccCce---------eceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHK---------KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~---------~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (313)
..++.|+-.|++.+-.+..+.....+. ...|+ ..|++++|+|....|++++.||+..+||-+....+.+.
T Consensus 211 ~~~alGsiEGrv~iq~id~~~~~~nFt-FkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s 289 (347)
T KOG0647|consen 211 DGFALGSIEGRVAIQYIDDPNPKDNFT-FKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTS 289 (347)
T ss_pred CceEeeeecceEEEEecCCCCccCcee-EEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhcc
Confidence 777999999999998876642211110 11222 35788999999999999999999999998776555554
Q ss_pred -ecCCceeEEEeccCCCEEEEccccc
Q 021399 230 -VTERPVNAVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 230 -~~~~~~~~~~~~p~~~~~~~~~~~~ 254 (313)
.++++|.+.+|+.+|...+-+-|.|
T Consensus 290 ~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 290 ETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred CcCCCccceeEecCCCCEEEEEeecc
Confidence 4678999999999999877766544
No 100
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=3.2e-25 Score=192.65 Aligned_cols=190 Identities=27% Similarity=0.418 Sum_probs=168.1
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~ 85 (313)
|.+|+.+|.|+.|+++..+|+.|+.+|+|++||++.++.++++.||...+.+++|+|-+.++++|+.|...++||++...
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G 145 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG 145 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999987543
Q ss_pred EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee
Q 021399 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (313)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~ 165 (313)
+... ..+|...+..+.|+|+|++++.++
T Consensus 146 c~~~----------------------------------------------------~~s~~~vv~~l~lsP~Gr~v~~g~ 173 (825)
T KOG0267|consen 146 CSHT----------------------------------------------------YKSHTRVVDVLRLSPDGRWVASGG 173 (825)
T ss_pred ceee----------------------------------------------------ecCCcceeEEEeecCCCceeeccC
Confidence 3322 234556677888999999999999
Q ss_pred CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEeccCC
Q 021399 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLL 244 (313)
Q Consensus 166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~ 244 (313)
+|..+++||...++.+.++. +|...+.++.|+|..-.+++||.|+++++||+++.+.+..... ...+.+.+|+|++
T Consensus 174 ed~tvki~d~~agk~~~ef~---~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~ 250 (825)
T KOG0267|consen 174 EDNTVKIWDLTAGKLSKEFK---SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDG 250 (825)
T ss_pred Ccceeeeecccccccccccc---cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCc
Confidence 99999999999999887775 5889999999999999999999999999999999988877653 4568999999998
Q ss_pred CEEEEc
Q 021399 245 DHVVLG 250 (313)
Q Consensus 245 ~~~~~~ 250 (313)
..++.+
T Consensus 251 ~~~~~G 256 (825)
T KOG0267|consen 251 KIVLSG 256 (825)
T ss_pred eeeecC
Confidence 765543
No 101
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2e-21 Score=147.76 Aligned_cols=275 Identities=18% Similarity=0.256 Sum_probs=188.4
Q ss_pred cccceeEEEEccCCCEEEEeeCCCCeEEEeCC---CC------------cEEEEecCCCCceEEEEECCCCCeEEEeeCC
Q 021399 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD---NG------------ERLGTYRGHNGAVWCCDVSRDSMTLITGSAD 73 (313)
Q Consensus 9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~---~~------------~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D 73 (313)
-.+.|..++|+|.|.+.+.||..++.||.-.. +. ...+..+-|+++|.|.+|+|+|++++||+.|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND 110 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence 35678899999999999999999999987322 11 1234557799999999999999999999999
Q ss_pred CcEEEEECCCCeEE-----EEec-CCCCeeEEEeecC----CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec
Q 021399 74 QTAKLWNVETGAQL-----FTFN-FDSPARSVDFAVG----DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 143 (313)
Q Consensus 74 ~~v~vWd~~~~~~~-----~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (313)
++||+--.....+. ..++ +...+..+.|..+ +.+++.... +..+.+-. .-..+.....+.
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga------gdc~iy~t----dc~~g~~~~a~s 180 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA------GDCKIYIT----DCGRGQGFHALS 180 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC------CcceEEEe----ecCCCCcceeec
Confidence 99999765432221 1122 3456666766542 222222111 01111100 012345566778
Q ss_pred CCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeeccccc----CceeceEEEEECCCCCEEEEeeCCCcEEEEE
Q 021399 144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET----GHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (313)
Q Consensus 144 ~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~----~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd 219 (313)
+|.+.|..+. +=++..|++|+.|.+|+.||++-..++..+.... -.+..|.+++..|.|..|++|-.|..+.+||
T Consensus 181 ghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 181 GHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred CCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 8988886553 2245789999999999999998877776653211 1246799999999999999999999999999
Q ss_pred CCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC
Q 021399 220 ARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298 (313)
Q Consensus 220 ~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp 298 (313)
++.+..++.+. +...++++-|+|...+++++ +.| ..+.+.|.+. |....-++...-.|...+..+.|+|
T Consensus 260 irg~r~iq~f~phsadir~vrfsp~a~yllt~-syd-~~ikltdlqg--------dla~el~~~vv~ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 260 IRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC-SYD-MKIKLTDLQG--------DLAHELPIMVVAEHKDKAIQCRWHP 329 (350)
T ss_pred eeCCceeeeeCCCccceeEEEeCCCceEEEEe-ccc-ceEEEeeccc--------chhhcCceEEEEeccCceEEEEecC
Confidence 99999999985 45679999999988887764 333 3344445432 1111122223345777788888988
Q ss_pred CCCeeEEE
Q 021399 299 DGKRYGFL 306 (313)
Q Consensus 299 dgk~~~~~ 306 (313)
. .|.|+
T Consensus 330 ~--d~sfi 335 (350)
T KOG0641|consen 330 Q--DFSFI 335 (350)
T ss_pred c--cceee
Confidence 7 45554
No 102
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=8.7e-23 Score=168.13 Aligned_cols=231 Identities=22% Similarity=0.301 Sum_probs=185.2
Q ss_pred cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (313)
Q Consensus 9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~ 88 (313)
....+..+...|....+++|+.|..+.++|...++.+.+|+||...|+.+.++|+...+++++.|..|+||........
T Consensus 218 ~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~- 296 (506)
T KOG0289|consen 218 STPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP- 296 (506)
T ss_pred CCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc-
Confidence 3445666766676689999999999999999999999999999999999999999999999999999999987543211
Q ss_pred EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCC
Q 021399 89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168 (313)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~ 168 (313)
.....|.++|+.+..+|.|+||+++++|+
T Consensus 297 ---------------------------------------------------~~~~~h~~~V~~ls~h~tgeYllsAs~d~ 325 (506)
T KOG0289|consen 297 ---------------------------------------------------TSSRPHEEPVTGLSLHPTGEYLLSASNDG 325 (506)
T ss_pred ---------------------------------------------------cccccccccceeeeeccCCcEEEEecCCc
Confidence 11234678899999999999999999999
Q ss_pred eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEE
Q 021399 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHV 247 (313)
Q Consensus 169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~ 247 (313)
+...-|.+++..+...... .-.-.+++.+|+|||..+.+|..|+.+++||+.++..+..+. +..+|.+++|+..|-++
T Consensus 326 ~w~Fsd~~~g~~lt~vs~~-~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~L 404 (506)
T KOG0289|consen 326 TWAFSDISSGSQLTVVSDE-TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWL 404 (506)
T ss_pred eEEEEEccCCcEEEEEeec-cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEE
Confidence 9999999999887654321 223458999999999999999999999999999998887775 56789999999999888
Q ss_pred EEcccccCceeEeeccCCCceeeeeeehhhhhhhcccc-ccccceeEEEECCCCCeeEEE
Q 021399 248 VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK-GHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~fspdgk~~~~~ 306 (313)
++++. |+ .+..||.|+-+. +..+. .-...|.++.|.+.|+++++-
T Consensus 405 at~ad-d~-~V~lwDLRKl~n------------~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 405 ATAAD-DG-SVKLWDLRKLKN------------FKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred EEEec-CC-eEEEEEehhhcc------------cceeeccccccceeEEEcCCCCeEEee
Confidence 77653 32 366777665331 12111 112378999999999998875
No 103
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.2e-22 Score=161.09 Aligned_cols=226 Identities=19% Similarity=0.300 Sum_probs=174.7
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC--eEEEeeCCCcEEEEECC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM--TLITGSADQTAKLWNVE 82 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~--~l~s~s~D~~v~vWd~~ 82 (313)
.+..|..++++|+. +|.++||||.|.+|+|||.....++..+-.|.+.|+++.|.++-. .|++|+.||.|.+|+..
T Consensus 38 ~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~ 115 (362)
T KOG0294|consen 38 AFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVG 115 (362)
T ss_pred cccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcC
Confidence 56789999999987 599999999999999999999999999999999999999988654 89999999999999977
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
..++ +..+++|.+.|+.+..+|.++.-+
T Consensus 116 ~W~~----------------------------------------------------~~slK~H~~~Vt~lsiHPS~KLAL 143 (362)
T KOG0294|consen 116 SWEL----------------------------------------------------LKSLKAHKGQVTDLSIHPSGKLAL 143 (362)
T ss_pred CeEE----------------------------------------------------eeeecccccccceeEecCCCceEE
Confidence 6432 234567888899999999999999
Q ss_pred EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEecc
Q 021399 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p 242 (313)
+.+.|+.+++||+-.++.-.... -....+.+.|+|.|.+++.++.+ .|-+|.+++-.....+..+..+.++-|
T Consensus 144 sVg~D~~lr~WNLV~Gr~a~v~~----L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~-- 216 (362)
T KOG0294|consen 144 SVGGDQVLRTWNLVRGRVAFVLN----LKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATF-- 216 (362)
T ss_pred EEcCCceeeeehhhcCccceeec----cCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeee--
Confidence 99999999999987765322111 12233448999999998888876 588999988777666654444445444
Q ss_pred CCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEE--CCCCCeeE
Q 021399 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF--NPDGKRYG 304 (313)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~f--spdgk~~~ 304 (313)
.....++.|+++. .+++||.....++..+.+|..+|-++++ +|++.+++
T Consensus 217 l~~~~L~vG~d~~-------------~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lv 267 (362)
T KOG0294|consen 217 LDGSELLVGGDNE-------------WISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLV 267 (362)
T ss_pred cCCceEEEecCCc-------------eEEEeccCCCccceeeecchhheeeeEEEecCCceEEE
Confidence 3333444445443 3567887778888899999999998883 44454443
No 104
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=8e-22 Score=149.92 Aligned_cols=196 Identities=19% Similarity=0.247 Sum_probs=138.9
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE------------------------------------------
Q 021399 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER------------------------------------------ 44 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~------------------------------------------ 44 (313)
+.|+++|+|.+|||.|++|++||.|++|++..++..+.
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~i 165 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKI 165 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceE
Confidence 56899999999999999999999999999875543211
Q ss_pred ----------EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCC
Q 021399 45 ----------LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP 114 (313)
Q Consensus 45 ----------~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (313)
.+.+.+|.+-|.++. +=+|-.|++|++|.+|+.||++-..++.++...
T Consensus 166 y~tdc~~g~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------------------- 223 (350)
T KOG0641|consen 166 YITDCGRGQGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND--------------------- 223 (350)
T ss_pred EEeecCCCCcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCc---------------------
Confidence 122345666665543 113456777777777777776644433222100
Q ss_pred ceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceece
Q 021399 115 FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI 194 (313)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v 194 (313)
..+.+ .-.+.+..++..|.|+.+++|-.|...-+||++-+.+++++. .|...|
T Consensus 224 ----------------~~~~g--------lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~---phsadi 276 (350)
T KOG0641|consen 224 ----------------FHDGG--------LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH---PHSADI 276 (350)
T ss_pred ----------------ccCCC--------cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC---CCccce
Confidence 00000 012467888999999999999999999999999999988775 589999
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEEECCCC----cEEEEE-ecCCceeEEEeccCCCEEEEcc
Q 021399 195 TSLAKAADGSHFLTGSLDKSAKLWDARTL----ELIKTY-VTERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 195 ~~~~~s~~~~~l~s~s~dg~i~iwd~~~~----~~~~~~-~~~~~~~~~~~~p~~~~~~~~~ 251 (313)
+++.|+|...++++++.|..|++-|+..- .++-.. .+...+..+-|+|..-..+.+.
T Consensus 277 r~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisss 338 (350)
T KOG0641|consen 277 RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSS 338 (350)
T ss_pred eEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeecc
Confidence 99999999999999999999999998642 122111 2445667788999765555443
No 105
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=5.3e-23 Score=170.75 Aligned_cols=192 Identities=26% Similarity=0.424 Sum_probs=152.5
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC---------CcEEEEecCCCCceEEEEECCC--CCeEEEeeCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN---------GERLGTYRGHNGAVWCCDVSRD--SMTLITGSAD 73 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~---------~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D 73 (313)
++.+|-++|+|+.|+.||.+|+|||.||.|.+|.+.+ .+.++.|.+|.-+|+.+...+. +..++|+|.|
T Consensus 118 v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D 197 (476)
T KOG0646|consen 118 VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASED 197 (476)
T ss_pred HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCC
Confidence 4688999999999999999999999999999996542 3467889999999999887654 4589999999
Q ss_pred CcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399 74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (313)
Q Consensus 74 ~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (313)
.++|+||+..+..+.++.++. .+.++.
T Consensus 198 ~t~k~wdlS~g~LLlti~fp~-----------------------------------------------------si~av~ 224 (476)
T KOG0646|consen 198 RTIKLWDLSLGVLLLTITFPS-----------------------------------------------------SIKAVA 224 (476)
T ss_pred ceEEEEEeccceeeEEEecCC-----------------------------------------------------cceeEE
Confidence 999999999987765554433 344555
Q ss_pred EccCCCEEEEeeCCCeEEEEECCCCceee-------------ecccccCcee--ceEEEEECCCCCEEEEeeCCCcEEEE
Q 021399 154 WGPLNRTIISAGEDAIVRIWDTETGKLLK-------------ESDKETGHKK--TITSLAKAADGSHFLTGSLDKSAKLW 218 (313)
Q Consensus 154 ~~~~~~~i~t~~~d~~i~lwd~~~~~~~~-------------~~~~~~~h~~--~v~~~~~s~~~~~l~s~s~dg~i~iw 218 (313)
..|.++.+..|+++|.|.+.++..-...+ .+....||.. .|+|++.+-||..|++|+.||++.+|
T Consensus 225 lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvW 304 (476)
T KOG0646|consen 225 LDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVW 304 (476)
T ss_pred EcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEE
Confidence 66667777778888877777654322100 1122356777 99999999999999999999999999
Q ss_pred ECCCCcEEEEEe-cCCceeEEEeccCCCEEEE
Q 021399 219 DARTLELIKTYV-TERPVNAVTMSPLLDHVVL 249 (313)
Q Consensus 219 d~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~ 249 (313)
|+.+.++++++. ...+|+.+.+.|.-...+.
T Consensus 305 di~S~Q~iRtl~~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 305 DIYSKQCIRTLQTSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred ecchHHHHHHHhhhccccceeEeeccccceec
Confidence 999999999987 6788999999887554444
No 106
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=9.1e-21 Score=160.39 Aligned_cols=254 Identities=17% Similarity=0.135 Sum_probs=171.3
Q ss_pred CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeE-EEeeCCCcEEEEECCCCeEEEEecCCCCeeEEE
Q 021399 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVD 100 (313)
Q Consensus 22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~ 100 (313)
+..++|++.|+.+++||.++++.+..+..|.. +.+++|+|+++.+ ++++.|+.|++||+.+++....+........+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 79 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFA 79 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEE
Confidence 35788999999999999999999888887654 6789999999865 677889999999999887766554444455677
Q ss_pred eecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCC-eEEEEECCCCc
Q 021399 101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA-IVRIWDTETGK 179 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~-~i~lwd~~~~~ 179 (313)
+.+++..+++.... ...+..+++. ....+..+.. ...+..+.|+|++..++++..++ .+..||..+++
T Consensus 80 ~~~~g~~l~~~~~~----~~~l~~~d~~------~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 80 LHPNGKILYIANED----DNLVTVIDIE------TRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred ECCCCCEEEEEcCC----CCeEEEEECC------CCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence 77776655443211 1122223221 1122333332 22356789999999999888765 57788998776
Q ss_pred eeeecccccCceeceEEEEECCCCCEEEE-eeCCCcEEEEECCCCcEEEEEecCC--------ceeEEEeccCCCEEEEc
Q 021399 180 LLKESDKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLELIKTYVTER--------PVNAVTMSPLLDHVVLG 250 (313)
Q Consensus 180 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~--------~~~~~~~~p~~~~~~~~ 250 (313)
...... .......++|++++.+++. +..++.|++||+++++++..+.... ....++|+|++..++++
T Consensus 149 ~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~ 224 (300)
T TIGR03866 149 IVDNVL----VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA 224 (300)
T ss_pred EEEEEE----cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence 654332 1234577899999998854 4569999999999998877654211 13468899999987765
Q ss_pred ccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 251 GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
.+.+. .+..+|.+.+ +.+..+ .+...+++++|+|||+++..
T Consensus 225 ~~~~~-~i~v~d~~~~------------~~~~~~-~~~~~~~~~~~~~~g~~l~~ 265 (300)
T TIGR03866 225 LGPAN-RVAVVDAKTY------------EVLDYL-LVGQRVWQLAFTPDEKYLLT 265 (300)
T ss_pred cCCCC-eEEEEECCCC------------cEEEEE-EeCCCcceEEECCCCCEEEE
Confidence 44332 2444454332 222111 23457899999999998754
No 107
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.5e-22 Score=166.66 Aligned_cols=235 Identities=16% Similarity=0.208 Sum_probs=179.6
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCC--CCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeE
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQ 86 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~--~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~ 86 (313)
..+|+++.|+|..+.|++++.|++++||-++ ....+..+.--..+|.+.+|.|+|+ .++++|....+..||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 4579999999999999999999999999554 4445666665678999999999998 999999999999999988764
Q ss_pred EEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCC-CCceEEEEEccCCCEEEEee
Q 021399 87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRTIISAG 165 (313)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~i~t~~ 165 (313)
...... .++ +..+.....++++++|+..|
T Consensus 293 ~k~~~~--------------------------------------------------~g~e~~~~e~FeVShd~~fia~~G 322 (514)
T KOG2055|consen 293 TKLKPP--------------------------------------------------YGVEEKSMERFEVSHDSNFIAIAG 322 (514)
T ss_pred ccccCC--------------------------------------------------CCcccchhheeEecCCCCeEEEcc
Confidence 321110 000 11233455678889999999
Q ss_pred CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeE--EEeccC
Q 021399 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPL 243 (313)
Q Consensus 166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~p~ 243 (313)
..|.|+|--..++..+..+. -.+.|.+++|+.|++.|++.+.+|.|.+||++...++..+..+..+.. ++.++.
T Consensus 323 ~~G~I~lLhakT~eli~s~K----ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~n 398 (514)
T KOG2055|consen 323 NNGHIHLLHAKTKELITSFK----IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLN 398 (514)
T ss_pred cCceEEeehhhhhhhhheee----eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCC
Confidence 99999999998888765543 467899999999999999999999999999999999999988777654 555566
Q ss_pred CCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 244 LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
+.+ ++.|++.+.|-++|... .+.....+++..+.--...|++++||||++++|++
T Consensus 399 g~y--lA~GS~~GiVNIYd~~s------~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAia 453 (514)
T KOG2055|consen 399 GSY--LATGSDSGIVNIYDGNS------CFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIA 453 (514)
T ss_pred Cce--EEeccCcceEEEeccch------hhccCCCCchhhhhhhheeeeeeeeCcchhhhhhh
Confidence 664 44455666666666322 11122344455555557899999999999999986
No 108
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=7e-23 Score=165.97 Aligned_cols=205 Identities=19% Similarity=0.281 Sum_probs=154.6
Q ss_pred CCcc-cccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCcE---EEEecCCCCceEEEEECCCC-CeEEEeeCCC
Q 021399 1 MRPI-LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGER---LGTYRGHNGAVWCCDVSRDS-MTLITGSADQ 74 (313)
Q Consensus 1 ~~~~-~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~~---~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~ 74 (313)
+||+ ++.+|.+.=+.|+|||- --.|+||..-+.|++|...++.- ...|.+|+.+|-.+.|||.. ..|+|||.||
T Consensus 201 ~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg 280 (440)
T KOG0302|consen 201 FRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG 280 (440)
T ss_pred cCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc
Confidence 5777 78889998899999993 23688888889999998887753 23567899999999999964 5899999999
Q ss_pred cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE
Q 021399 75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (313)
Q Consensus 75 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (313)
+|+|||++.+... ..+..+.|.+.|+-+.|
T Consensus 281 sIrIWDiRs~~~~--------------------------------------------------~~~~~kAh~sDVNVISW 310 (440)
T KOG0302|consen 281 SIRIWDIRSGPKK--------------------------------------------------AAVSTKAHNSDVNVISW 310 (440)
T ss_pred eEEEEEecCCCcc--------------------------------------------------ceeEeeccCCceeeEEc
Confidence 9999999876311 11222567778888999
Q ss_pred ccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC-CCEEEEeeCCCcEEEEECCCCcE--------
Q 021399 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLEL-------- 225 (313)
Q Consensus 155 ~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~~~-------- 225 (313)
+....+|++|++||+++|||+++.+.-+.+....-|+..|+++.|+|. ...|++++.|.+|.+||+....-
T Consensus 311 nr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a 390 (440)
T KOG0302|consen 311 NRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEA 390 (440)
T ss_pred cCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcccc
Confidence 988889999999999999998764432222222358999999999985 45688899999999999754321
Q ss_pred -----------EEEEecCCceeEEEeccCCCEEEEcccccC
Q 021399 226 -----------IKTYVTERPVNAVTMSPLLDHVVLGGGQDA 255 (313)
Q Consensus 226 -----------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 255 (313)
+..-+....+..+.|++..+.++++.+-++
T Consensus 391 ~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 391 AEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred ccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 111112345778999999887777655444
No 109
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=8.7e-21 Score=159.21 Aligned_cols=257 Identities=18% Similarity=0.271 Sum_probs=180.0
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
+.|.|++|.++|+. ++|..+|.|.||+..+.+..++..+|.+.|.+++.-.+|. |+||+.|+.|..||-.-. .+...
T Consensus 247 k~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~-k~r~~ 323 (626)
T KOG2106|consen 247 KFVLCVTFLENGDV-ITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYR-KLRET 323 (626)
T ss_pred eEEEEEEEcCCCCE-EeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecccccc-ccccc
Confidence 46899999999975 5699999999999888877777779999999999998886 556999999999993222 22222
Q ss_pred c---CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399 91 N---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (313)
Q Consensus 91 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d 167 (313)
. .-.+++.+.-..++ +.+..+.+++.. +.+ .+.......+|......++.+|..+.++|++.|
T Consensus 324 elPe~~G~iRtv~e~~~d-i~vGTtrN~iL~-Gt~------------~~~f~~~v~gh~delwgla~hps~~q~~T~gqd 389 (626)
T KOG2106|consen 324 ELPEQFGPIRTVAEGKGD-ILVGTTRNFILQ-GTL------------ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQD 389 (626)
T ss_pred cCchhcCCeeEEecCCCc-EEEeeccceEEE-eee------------cCCceEEEEecccceeeEEcCCChhheeeccCc
Confidence 2 12334444322223 444444432211 110 112234456777788889999999999999999
Q ss_pred CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEE
Q 021399 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHV 247 (313)
Q Consensus 168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 247 (313)
+.++||+ ..+-...++ -.....|+.|+|.| .+|.|+..|.-.+.|.++...+..-....++.++.|+|+|..+
T Consensus 390 k~v~lW~-~~k~~wt~~-----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~l 462 (626)
T KOG2106|consen 390 KHVRLWN-DHKLEWTKI-----IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFL 462 (626)
T ss_pred ceEEEcc-CCceeEEEE-----ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEE
Confidence 9999999 322222222 34678899999999 9999999999999999997776665667899999999999988
Q ss_pred EEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399 248 VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY 303 (313)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~ 303 (313)
+++..+. .++++-.......... +++ .|.++|+.+.||+|++.+
T Consensus 463 Avgs~d~--~iyiy~Vs~~g~~y~r--------~~k--~~gs~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 463 AVGSHDN--HIYIYRVSANGRKYSR--------VGK--CSGSPITHLDWSSDSQFL 506 (626)
T ss_pred EEecCCC--eEEEEEECCCCcEEEE--------eee--ecCceeEEeeecCCCceE
Confidence 8765443 3443332211111111 122 344899999999999985
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=8.3e-22 Score=163.74 Aligned_cols=228 Identities=21% Similarity=0.290 Sum_probs=177.3
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
++|.|+.-+|+|.+|+.|...+.+++|.+.+|+.+..+.+|-.+|+|+.|+-|+..|+|||.||.|.+|++.+--
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv----- 156 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLV----- 156 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeec-----
Confidence 468999999999999988899999999999999999999999999999999999999999999999999865310
Q ss_pred cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC--CCEEEEeeCCC
Q 021399 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDA 168 (313)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~i~t~~~d~ 168 (313)
.++ .+....+...+.+|.-+|+++...+. ..+++|+|.|.
T Consensus 157 -----------~a~---------------------------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~ 198 (476)
T KOG0646|consen 157 -----------SAD---------------------------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR 198 (476)
T ss_pred -----------ccc---------------------------cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCc
Confidence 000 00122345566778778888777654 46899999999
Q ss_pred eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc----------------EEEEEe-c
Q 021399 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE----------------LIKTYV-T 231 (313)
Q Consensus 169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~----------------~~~~~~-~ 231 (313)
++++||+..+.++..+. ....+++++.+|-+..+..|+.+|.|.+.++.... .+..+. +
T Consensus 199 t~k~wdlS~g~LLlti~----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh 274 (476)
T KOG0646|consen 199 TIKLWDLSLGVLLLTIT----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGH 274 (476)
T ss_pred eEEEEEeccceeeEEEe----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccc
Confidence 99999999999887764 35679999999999999999999999988765432 122222 2
Q ss_pred C--CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399 232 E--RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (313)
Q Consensus 232 ~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd 299 (313)
. ..|.|++.+-++.-++ +|+.|+ ...+||..+..++..+..-.++|+-+.+.|=
T Consensus 275 ~~~~~ITcLais~DgtlLl-SGd~dg-------------~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 275 ENESAITCLAISTDGTLLL-SGDEDG-------------KVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred cCCcceeEEEEecCccEEE-eeCCCC-------------CEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 2 3789999998887554 444443 2456777777777766656789999988554
No 111
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=2.3e-23 Score=170.51 Aligned_cols=232 Identities=19% Similarity=0.317 Sum_probs=182.0
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
.+..|...+..+.|-++...|++|+.|..|++|+....+ .+.++.|-.+.|+++.|.+++..+++++.|+.+++|++.
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd 249 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVD 249 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeecc
Confidence 577899999999999999999999999999999887665 678899989999999999999999999999999999987
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
+.... ..+.+|+.++..+.|......++
T Consensus 250 ~~r~~----------------------------------------------------~TLsGHtdkVt~ak~~~~~~~vV 277 (459)
T KOG0288|consen 250 SLRLR----------------------------------------------------HTLSGHTDKVTAAKFKLSHSRVV 277 (459)
T ss_pred chhhh----------------------------------------------------hhhcccccceeeehhhcccccee
Confidence 65432 12346777777777776666699
Q ss_pred EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEecc
Q 021399 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p 242 (313)
+|+.|.+|++||+....+.+++.. ...+.++..+ ...++||-.|++||+||.++..+..+....+.+.++..++
T Consensus 278 sgs~DRtiK~WDl~k~~C~kt~l~----~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~ 351 (459)
T KOG0288|consen 278 SGSADRTIKLWDLQKAYCSKTVLP----GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSM 351 (459)
T ss_pred eccccchhhhhhhhhhheeccccc----cccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeecc
Confidence 999999999999998877776543 2344555544 5678999999999999999999999988888999999999
Q ss_pred CCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~ 304 (313)
++..++.++-+|. +.+.|.|....... ....+..-+| ..+.+.||||+.++|
T Consensus 352 ~g~~lLsssRDdt--l~viDlRt~eI~~~------~sA~g~k~as--DwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 352 DGLELLSSSRDDT--LKVIDLRTKEIRQT------FSAEGFKCAS--DWTRVVFSPDGSYVA 403 (459)
T ss_pred CCeEEeeecCCCc--eeeeecccccEEEE------eecccccccc--ccceeEECCCCceee
Confidence 9999888755443 44455554322111 1111122233 489999999999864
No 112
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.1e-20 Score=150.14 Aligned_cols=237 Identities=21% Similarity=0.290 Sum_probs=171.9
Q ss_pred EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCC-CCeeEEEeecCCeEEEEECCCceeccccce
Q 021399 45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIH 123 (313)
Q Consensus 45 ~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (313)
-+.|+.-.+.|.++.|+++|+.+++++.|.++++||..+++++.++... -.+..+.|......+..++.+ .+..++
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk---~d~tIr 83 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTK---EDDTIR 83 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCC---CCCceE
Confidence 3456666789999999999999999999999999999999988777542 234444554443333333321 122233
Q ss_pred eeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccc----------------
Q 021399 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE---------------- 187 (313)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~---------------- 187 (313)
..++. .++.+..+.||...|+++..+|.++.+++++.|++||+||++..++.-.+...
T Consensus 84 yLsl~------dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 84 YLSLH------DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFAL 157 (311)
T ss_pred EEEee------cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEE
Confidence 33322 35678889999999999999999999999999999999999865432211100
Q ss_pred --------------------------cCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCce----eE
Q 021399 188 --------------------------TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPV----NA 237 (313)
Q Consensus 188 --------------------------~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~----~~ 237 (313)
.+-....+.+.|||||++|+.+...+.+++.|.=+|....++...... ..
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~ 237 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLS 237 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCccee
Confidence 011344677889999999999999999999999999988877543222 47
Q ss_pred EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccc-cccceeEEEECCCCCeeE
Q 021399 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINALAFNPDGKRYG 304 (313)
Q Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~fspdgk~~~ 304 (313)
.+|+|+++.++.+.. |+ .+.+|+.+++..+..+.+ +.+++.++.|+|---+|+
T Consensus 238 a~ftPds~Fvl~gs~-dg-------------~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~ 291 (311)
T KOG1446|consen 238 ATFTPDSKFVLSGSD-DG-------------TIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFV 291 (311)
T ss_pred EEECCCCcEEEEecC-CC-------------cEEEEEcCCCcEeeEecCCCCCCccccccCCceeeee
Confidence 889999988776543 22 244677777777777777 899999999999744443
No 113
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.90 E-value=2.5e-22 Score=168.79 Aligned_cols=241 Identities=22% Similarity=0.337 Sum_probs=158.7
Q ss_pred EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE-Ee---c--CCCCeeEEEeec-CCeEEEEECCCcee
Q 021399 45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF-TF---N--FDSPARSVDFAV-GDKLAVITTDPFME 117 (313)
Q Consensus 45 ~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~-~~---~--~~~~~~~~~~~~-~~~~~~~~~~~~~~ 117 (313)
...+++|...|.++++.|.|-.|+|||.|.+|++||........ .+ . -.+.+.++.+++ ++.+++++...-..
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqak 239 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAK 239 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCccee
Confidence 34678999999999999999999999999999999986543211 11 1 135788888887 56666665542111
Q ss_pred c-cccce-eeeeeeCCCCCCCce---EEEecCCCCceEEEEEccCC-CEEEEeeCCCeEEEEECCCCceeeeccc---cc
Q 021399 118 L-NSAIH-VKRIARDPADQGGES---VLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDK---ET 188 (313)
Q Consensus 118 ~-~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~---~~ 188 (313)
+ +.... .... ..+.+. ....+||-..+++.+|+|.. +.|+|++.||++||||+...+.-..+.. ..
T Consensus 240 l~DRdG~~~~e~-----~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~ 314 (641)
T KOG0772|consen 240 LLDRDGFEIVEF-----SKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAG 314 (641)
T ss_pred EEccCCceeeee-----eccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCC
Confidence 1 11100 0000 001111 12346888889999999975 5789999999999999976543222221 22
Q ss_pred CceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE-----EEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399 189 GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-----IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262 (313)
Q Consensus 189 ~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~-----~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (313)
+.+-.++.++|++||+.||+|+.||.|.+|+...... ++.-. ....+.+++|+++|++++.-|.++. +.+||
T Consensus 315 g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~t--LKvWD 392 (641)
T KOG0772|consen 315 GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDT--LKVWD 392 (641)
T ss_pred CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCc--eeeee
Confidence 4456788999999999999999999999999765322 22211 1347999999999998876554442 33444
Q ss_pred cCCCceeeeeeehhhhhhhcccccc--ccceeEEEECCCCCee
Q 021399 263 HRAGKFEAKFFDKILQEEIGGVKGH--FGPINALAFNPDGKRY 303 (313)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~~~fspdgk~~ 303 (313)
.|. ..+++....+- .-+-+.+.||||.|.+
T Consensus 393 Lrq-----------~kkpL~~~tgL~t~~~~tdc~FSPd~kli 424 (641)
T KOG0772|consen 393 LRQ-----------FKKPLNVRTGLPTPFPGTDCCFSPDDKLI 424 (641)
T ss_pred ccc-----------cccchhhhcCCCccCCCCccccCCCceEE
Confidence 332 22233322222 3356888999998764
No 114
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7.5e-22 Score=170.14 Aligned_cols=218 Identities=20% Similarity=0.328 Sum_probs=173.4
Q ss_pred EEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCC
Q 021399 16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP 95 (313)
Q Consensus 16 ~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~ 95 (313)
+.|+. ...|+.| .+..|.+|+..++........++..|+++.|+++|+.|+.|-.+|.|.|||..+.+.+..
T Consensus 183 ldWss-~n~laVa-lg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~------ 254 (484)
T KOG0305|consen 183 LDWSS-ANVLAVA-LGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT------ 254 (484)
T ss_pred hhccc-CCeEEEE-ecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc------
Confidence 56773 3355544 457899999999987666666689999999999999999999999999999876543321
Q ss_pred eeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC-CCCceEEEEEccCCCEEEEeeCCCeEEEEE
Q 021399 96 ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWGPLNRTIISAGEDAIVRIWD 174 (313)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd 174 (313)
+.+ |.++|.+++|. +..+.+|+.|+.|..+|
T Consensus 255 ----------------------------------------------~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~d 286 (484)
T KOG0305|consen 255 ----------------------------------------------LRGSHASRVGSLAWN--SSVLSSGSRDGKILNHD 286 (484)
T ss_pred ----------------------------------------------ccCCcCceeEEEecc--CceEEEecCCCcEEEEE
Confidence 122 67788889998 46789999999999999
Q ss_pred CCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccc
Q 021399 175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQ 253 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~ 253 (313)
++..+.... ...+|...|+.+.|++|+.++|+|+.|+.+.|||....++...+. +...+.+++|+|....+++.||.
T Consensus 287 vR~~~~~~~--~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG 364 (484)
T KOG0305|consen 287 VRISQHVVS--TLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG 364 (484)
T ss_pred Eecchhhhh--hhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC
Confidence 987765443 235799999999999999999999999999999998777776664 56789999999998877765543
Q ss_pred -cCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399 254 -DASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 254 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~ 304 (313)
-+. .++|||..+++.+.... -.+.|..|.|++..|++.
T Consensus 365 s~D~------------~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~ 403 (484)
T KOG0305|consen 365 SADR------------CIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELL 403 (484)
T ss_pred Cccc------------EEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEE
Confidence 332 35778777777666554 478999999999998864
No 115
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.89 E-value=1.5e-20 Score=166.20 Aligned_cols=289 Identities=14% Similarity=0.198 Sum_probs=213.3
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVET 83 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~ 83 (313)
+++++...|+++.-+|--..++.|-.+|+|.|++++.++.+.+|+.-.+.|++++|..||+ .+++|+..|.+-+||++.
T Consensus 197 ~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~ 276 (910)
T KOG1539|consen 197 TFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEK 276 (910)
T ss_pred EecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCC
Confidence 5778889999999999999999999999999999999999999986679999999999997 667777889999999998
Q ss_pred CeEEEEec--CCCCeeEEEeecCCeEEEEECC-Cceec---c---c-----------------------cce-eeeeeeC
Q 021399 84 GAQLFTFN--FDSPARSVDFAVGDKLAVITTD-PFMEL---N---S-----------------------AIH-VKRIARD 130 (313)
Q Consensus 84 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~---~-----------------------~~~-~~~~~~~ 130 (313)
.+.+.... +...+....|.++..+++.... +.... + + ..+ ......+
T Consensus 277 kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~D 356 (910)
T KOG1539|consen 277 KKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQD 356 (910)
T ss_pred CeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccC
Confidence 77664432 2234444455554443333211 10000 0 0 000 0000000
Q ss_pred CC---------------------------C-C-----C--------------------------CceEEEe---------
Q 021399 131 PA---------------------------D-Q-----G--------------------------GESVLIL--------- 142 (313)
Q Consensus 131 ~~---------------------------~-~-----~--------------------------~~~~~~~--------- 142 (313)
+. . . . ......+
T Consensus 357 rt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~ 436 (910)
T KOG1539|consen 357 RTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGR 436 (910)
T ss_pred cchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCccccc
Confidence 00 0 0 0 0000000
Q ss_pred --cCCC------CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCc
Q 021399 143 --KGPQ------GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214 (313)
Q Consensus 143 --~~~~------~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~ 214 (313)
-.+. ..+.+++.++-|++.+.|...|.|.++++++|-....+.....|...|+.++...-+..++|++.+|-
T Consensus 437 ~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi 516 (910)
T KOG1539|consen 437 HVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI 516 (910)
T ss_pred EEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcce
Confidence 0111 34567888888999999999999999999998776666555679999999999999999999999999
Q ss_pred EEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEE
Q 021399 215 AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 294 (313)
Q Consensus 215 i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 294 (313)
+++||.....++.++....++.++..+...+.++++.. .+.++++|..+.+.+..+.||...|+++
T Consensus 517 lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~d--------------df~I~vvD~~t~kvvR~f~gh~nritd~ 582 (910)
T KOG1539|consen 517 LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALD--------------DFSIRVVDVVTRKVVREFWGHGNRITDM 582 (910)
T ss_pred EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcC--------------ceeEEEEEchhhhhhHHhhccccceeee
Confidence 99999999998888887788888888887766655542 3567888998888888999999999999
Q ss_pred EECCCCCeeEEEE
Q 021399 295 AFNPDGKRYGFLL 307 (313)
Q Consensus 295 ~fspdgk~~~~~~ 307 (313)
+||||||.+....
T Consensus 583 ~FS~DgrWlisas 595 (910)
T KOG1539|consen 583 TFSPDGRWLISAS 595 (910)
T ss_pred EeCCCCcEEEEee
Confidence 9999999976543
No 116
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.3e-22 Score=174.71 Aligned_cols=224 Identities=21% Similarity=0.327 Sum_probs=176.3
Q ss_pred EEEEc-cCCCEEEEeeCCCCeEEEeCCCCc------EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399 15 YLKYN-KDGDLLFSCAKDHTPTVWFADNGE------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (313)
Q Consensus 15 ~~~fs-~~g~~l~s~s~d~~i~iw~~~~~~------~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~ 87 (313)
.+..+ |.+++|+|||.||.|++|+...-. .+..++.|..-|..+...-+++.|+|+|.|-+|++|+...+...
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~ 108 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF 108 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence 45555 456779999999999999766322 25678899999999998888999999999999999997654210
Q ss_pred EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE-ccCCCEEEEeeC
Q 021399 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW-GPLNRTIISAGE 166 (313)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~i~t~~~ 166 (313)
+ ...+..|...|.+++. -++.+.+|+||-
T Consensus 109 c--------------------------------------------------~stir~H~DYVkcla~~ak~~~lvaSgGL 138 (735)
T KOG0308|consen 109 C--------------------------------------------------MSTIRTHKDYVKCLAYIAKNNELVASGGL 138 (735)
T ss_pred h--------------------------------------------------HhhhhcccchheeeeecccCceeEEecCC
Confidence 0 0112235556666666 566778999999
Q ss_pred CCeEEEEECCCCc--eeeec------ccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeE
Q 021399 167 DAIVRIWDTETGK--LLKES------DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA 237 (313)
Q Consensus 167 d~~i~lwd~~~~~--~~~~~------~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~ 237 (313)
|+.|.|||++++. ++..+ ....|+...|.+++-.+.|..|++|+..+-+++||.++.+.+-.+. +...|++
T Consensus 139 D~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ 218 (735)
T KOG0308|consen 139 DRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRV 218 (735)
T ss_pred CccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEE
Confidence 9999999999772 22211 1123788999999999999999999999999999999998887776 4457999
Q ss_pred EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302 (313)
Q Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~ 302 (313)
+-.+++|..++.++++ + .|++||+...+++..+..|...||++.-+|+=+.
T Consensus 219 ll~~dDGt~~ls~sSD-g-------------tIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~ 269 (735)
T KOG0308|consen 219 LLVNDDGTRLLSASSD-G-------------TIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTH 269 (735)
T ss_pred EEEcCCCCeEeecCCC-c-------------eEEeeeccccceeeeEEeccCceEEEeeCCCcce
Confidence 9999999988776543 3 3788999888999999999999999999987443
No 117
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=8.2e-22 Score=163.26 Aligned_cols=199 Identities=17% Similarity=0.291 Sum_probs=156.4
Q ss_pred cccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCc-------EEEEecCCCCceEEEEECCC-CCeEEEeeCCCc
Q 021399 5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGE-------RLGTYRGHNGAVWCCDVSRD-SMTLITGSADQT 75 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~-------~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~ 75 (313)
.|+||++.=+.|+|++.. -+|++++.|+.|++||+.... ....+.+|+..|..++|++- ..+|++++.|+.
T Consensus 172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~ 251 (422)
T KOG0264|consen 172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK 251 (422)
T ss_pred EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence 799999977899999875 489999999999999987432 35678999999999999985 458999999999
Q ss_pred EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399 76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (313)
Q Consensus 76 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (313)
+.|||+++++. ++....++|.++++++.|+
T Consensus 252 L~iwD~R~~~~--------------------------------------------------~~~~~~~ah~~~vn~~~fn 281 (422)
T KOG0264|consen 252 LMIWDTRSNTS--------------------------------------------------KPSHSVKAHSAEVNCVAFN 281 (422)
T ss_pred EEEEEcCCCCC--------------------------------------------------CCcccccccCCceeEEEeC
Confidence 99999986310 0112335688899999999
Q ss_pred cCC-CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCCCcEEEE-----
Q 021399 156 PLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIKT----- 228 (313)
Q Consensus 156 ~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~----- 228 (313)
|-+ ..||||+.|++|+|||+++-+. .+....+|+..|..|.|+|... .|||++.|+.+.+||+..-...+.
T Consensus 282 p~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 282 PFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred CCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence 865 5678999999999999986443 3334468999999999999654 688899999999999865221111
Q ss_pred -------Ee---cCCceeEEEeccCCCEEEEcccccC
Q 021399 229 -------YV---TERPVNAVTMSPLLDHVVLGGGQDA 255 (313)
Q Consensus 229 -------~~---~~~~~~~~~~~p~~~~~~~~~~~~~ 255 (313)
+. +...|...+|+|....++++...|.
T Consensus 360 dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN 396 (422)
T KOG0264|consen 360 DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDN 396 (422)
T ss_pred cCCcceeEEecCcccccccccCCCCCCeEEEEecCCc
Confidence 22 2346888999999999988877663
No 118
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=3.5e-21 Score=167.00 Aligned_cols=219 Identities=20% Similarity=0.290 Sum_probs=171.9
Q ss_pred cccccccceeE-EEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 5 LMKGHERPLTY-LKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 5 ~l~~h~~~v~~-~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
.+.+|.+.|.+ ++|-+ ++-.|++|+.|+.|.+|......++++|++|++.|.|++...++. ++|||+|.++++|-+.
T Consensus 52 ~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~ 130 (745)
T KOG0301|consen 52 AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG 130 (745)
T ss_pred ecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecch
Confidence 45678888777 88885 445699999999999999999999999999999999999777776 8999999999999875
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
+.... ...++.++-.+...+.++++.++.++.+.++.. +..+..+.+|..-|..+++-+++ .|+
T Consensus 131 ~l~~~-l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--------------~~~l~tf~gHtD~VRgL~vl~~~-~fl 194 (745)
T KOG0301|consen 131 ELVYS-LQGHTASVWAVASLPENTYVTGSADKTIKLWKG--------------GTLLKTFSGHTDCVRGLAVLDDS-HFL 194 (745)
T ss_pred hhhcc-cCCcchheeeeeecCCCcEEeccCcceeeeccC--------------CchhhhhccchhheeeeEEecCC-CeE
Confidence 43221 113445566666667777777766655544322 34566788999999999988765 489
Q ss_pred EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC-ceeEEEec
Q 021399 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-PVNAVTMS 241 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~ 241 (313)
+|++||.|++|++ ++..+.+.. +|+.-+.+++...++..|+|++.|++++||+.. +|.+.+..+. .+=++.+-
T Consensus 195 ScsNDg~Ir~w~~-~ge~l~~~~---ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L 268 (745)
T KOG0301|consen 195 SCSNDGSIRLWDL-DGEVLLEMH---GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVL 268 (745)
T ss_pred eecCCceEEEEec-cCceeeeee---ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEe
Confidence 9999999999999 566665543 799999999988888899999999999999887 8888887665 56666666
Q ss_pred cCCCE
Q 021399 242 PLLDH 246 (313)
Q Consensus 242 p~~~~ 246 (313)
+.++.
T Consensus 269 ~NgDI 273 (745)
T KOG0301|consen 269 LNGDI 273 (745)
T ss_pred eCCCE
Confidence 67764
No 119
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2e-21 Score=173.35 Aligned_cols=195 Identities=16% Similarity=0.235 Sum_probs=155.3
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
+|...+-++.+++|+.+|++++.||.|-.|++-+..+......+++|+++|.++.|+|.+++||+.+.||+|++||+.++
T Consensus 91 iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~ 170 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDG 170 (933)
T ss_pred eeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccc
Confidence 45556678899999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
.+..++..-.+. .... ....+..+.|+|++..++..
T Consensus 171 ~~~~tl~~v~k~-------------------------------------n~~~-------~s~i~~~~aW~Pk~g~la~~ 206 (933)
T KOG1274|consen 171 ILSKTLTGVDKD-------------------------------------NEFI-------LSRICTRLAWHPKGGTLAVP 206 (933)
T ss_pred hhhhhcccCCcc-------------------------------------cccc-------ccceeeeeeecCCCCeEEee
Confidence 654332110000 0000 02345678899999889999
Q ss_pred eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCC
Q 021399 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL 244 (313)
Q Consensus 165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~ 244 (313)
..|+.|++++.........+... .+...+.++.|+|+|.|||+++.||.|.|||.++.+. -.....|.+++|.|+.
T Consensus 207 ~~d~~Vkvy~r~~we~~f~Lr~~-~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 207 PVDNTVKVYSRKGWELQFKLRDK-LSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNA 282 (933)
T ss_pred ccCCeEEEEccCCceeheeeccc-ccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCC
Confidence 99999999999887765444322 2444599999999999999999999999999998322 1123468899999988
Q ss_pred CEE
Q 021399 245 DHV 247 (313)
Q Consensus 245 ~~~ 247 (313)
+.+
T Consensus 283 n~i 285 (933)
T KOG1274|consen 283 NAI 285 (933)
T ss_pred Cee
Confidence 754
No 120
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=6.1e-21 Score=158.28 Aligned_cols=291 Identities=18% Similarity=0.190 Sum_probs=190.1
Q ss_pred ccccccccceeEEEEccCC--CEEEEeeCCCCeEEEeCCC----CcEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcE
Q 021399 4 ILMKGHERPLTYLKYNKDG--DLLFSCAKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTA 76 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g--~~l~s~s~d~~i~iw~~~~----~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v 76 (313)
.+.+-|...|++++|+|.- +++++|..-|.|=+||+.+ ...++.+..|.++|.++.|+|.+ ..+++.|.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 3556688899999999975 5888899999999999952 33467788999999999999975 488999999999
Q ss_pred EEEECCCCeEEEEecC---CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399 77 KLWNVETGAQLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (313)
Q Consensus 77 ~vWd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (313)
++=|++.+.....+.. ..-...++|...+..++...+ .+..++++... .+.....+..|..+|.++.
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~-----~G~f~~iD~R~-----~~s~~~~~~lh~kKI~sv~ 329 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN-----VGNFNVIDLRT-----DGSEYENLRLHKKKITSVA 329 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec-----ccceEEEEeec-----CCccchhhhhhhcccceee
Confidence 9999987643222222 112334445555544443322 11122222211 1122233455777999999
Q ss_pred EccCC-CEEEEeeCCCeEEEEECCCCceeee-cccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC----CCCcEEE
Q 021399 154 WGPLN-RTIISAGEDAIVRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA----RTLELIK 227 (313)
Q Consensus 154 ~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~----~~~~~~~ 227 (313)
++|.. .+++|+|.|++.+|||++.-..-.. +.....|+..|.++.|||.+-.|++.+.|..|+|||. ...++..
T Consensus 330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~ 409 (498)
T KOG4328|consen 330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLG 409 (498)
T ss_pred cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccc
Confidence 99875 4689999999999999875322111 2233469999999999999999999999999999998 4556677
Q ss_pred EEecCC------ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccce-eEEEECCCC
Q 021399 228 TYVTER------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI-NALAFNPDG 300 (313)
Q Consensus 228 ~~~~~~------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~~~fspdg 300 (313)
++.+.. ...-.+|.|+...++++.-.. .+-++|...+++...+.|+......-....|.-.. +...=+..|
T Consensus 410 ~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r--~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~G 487 (498)
T KOG4328|consen 410 TIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPR--PIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSG 487 (498)
T ss_pred eeeccCcccccccchhheeCCCccEEEEeccCc--ceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccc
Confidence 776543 244578999877776654333 25555655555444444432211111122344333 444444445
Q ss_pred CeeEEE
Q 021399 301 KRYGFL 306 (313)
Q Consensus 301 k~~~~~ 306 (313)
+++.|+
T Consensus 488 ki~vft 493 (498)
T KOG4328|consen 488 KIYVFT 493 (498)
T ss_pred eEEEEe
Confidence 555554
No 121
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.88 E-value=1e-20 Score=147.11 Aligned_cols=206 Identities=19% Similarity=0.262 Sum_probs=157.0
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC-----CcEEEE
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLW 79 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~v~vW 79 (313)
++.||++.|+|+..+-+.+++++|+.|.++++||+++|+++.+++. ..+|..+.|+++|++++.+..+ +.|-++
T Consensus 47 ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~f 125 (327)
T KOG0643|consen 47 TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVF 125 (327)
T ss_pred eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCeeEEEeeccCCcEEEEEehhhcCcceEEEEE
Confidence 6789999999999999999999999999999999999999999875 5689999999999877665433 568899
Q ss_pred ECCCC-------eEEEEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEE
Q 021399 80 NVETG-------AQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (313)
Q Consensus 80 d~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (313)
|++.. ++...+ .....+..+-|.+.++.++.... ++.+..++.. .+.+.+...+.|...|+.
T Consensus 126 di~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe-----~G~is~~da~-----~g~~~v~s~~~h~~~Ind 195 (327)
T KOG0643|consen 126 DIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHE-----DGSISIYDAR-----TGKELVDSDEEHSSKIND 195 (327)
T ss_pred EccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecC-----CCcEEEEEcc-----cCceeeechhhhcccccc
Confidence 98732 333333 33456666667775555544322 2223333322 122344455678889999
Q ss_pred EEEccCCCEEEEeeCCCeEEEEECCCCceeeeccc---------------------------------------------
Q 021399 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK--------------------------------------------- 186 (313)
Q Consensus 152 ~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~--------------------------------------------- 186 (313)
++++|+..+|+|++.|.+-++||+.+-..+++...
T Consensus 196 ~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i 275 (327)
T KOG0643|consen 196 LQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLI 275 (327)
T ss_pred ccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHH
Confidence 99999999999999999999999887655443221
Q ss_pred -------ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399 187 -------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (313)
Q Consensus 187 -------~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~ 221 (313)
..+|-+.|++++|+|+|+..+||+.||.||+--.+
T Consensus 276 ~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 276 FEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred HHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 12577889999999999999999999999987554
No 122
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.1e-20 Score=148.09 Aligned_cols=235 Identities=16% Similarity=0.184 Sum_probs=166.5
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
....|..++.+++|.+ ...+++|+.||.|+.+|+.++... .+..|..+|.|+.+++....++|||+|++|++||.+..
T Consensus 49 ~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~ 126 (323)
T KOG1036|consen 49 LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK 126 (323)
T ss_pred hheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccc
Confidence 3456899999999986 668899999999999999988753 56779999999999988889999999999999999875
Q ss_pred eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
.....+.....+.+++.. ++.++++..+..+............. ..-..-.-.+.+++.-|++.-++.+
T Consensus 127 ~~~~~~d~~kkVy~~~v~-g~~LvVg~~~r~v~iyDLRn~~~~~q----------~reS~lkyqtR~v~~~pn~eGy~~s 195 (323)
T KOG1036|consen 127 VVVGTFDQGKKVYCMDVS-GNRLVVGTSDRKVLIYDLRNLDEPFQ----------RRESSLKYQTRCVALVPNGEGYVVS 195 (323)
T ss_pred ccccccccCceEEEEecc-CCEEEEeecCceEEEEEcccccchhh----------hccccceeEEEEEEEecCCCceEEE
Confidence 544444444444444332 44555545443332222211111000 0001112356788888888889999
Q ss_pred eCCCeEEEEECCCCceeeec-ccccCc---------eeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CC
Q 021399 165 GEDAIVRIWDTETGKLLKES-DKETGH---------KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ER 233 (313)
Q Consensus 165 ~~d~~i~lwd~~~~~~~~~~-~~~~~h---------~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~ 233 (313)
+-||+|.+=.+......+.. .....| -..|++++|+|-...||||+.||.|.+||+.+.+.+.++.. +.
T Consensus 196 SieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~ 275 (323)
T KOG1036|consen 196 SIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYET 275 (323)
T ss_pred eecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCC
Confidence 99999887555443211110 001122 24689999999999999999999999999999888887754 46
Q ss_pred ceeEEEeccCCCEEEEccc
Q 021399 234 PVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 234 ~~~~~~~~p~~~~~~~~~~ 252 (313)
.|..++|+.+|..++++.+
T Consensus 276 SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 276 SISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ceEEEEeccCCCeEEEEec
Confidence 7999999999999988764
No 123
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.88 E-value=7.8e-22 Score=156.38 Aligned_cols=210 Identities=18% Similarity=0.295 Sum_probs=155.8
Q ss_pred EEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC------e------------EEEE-ecCCCCeeEEEeecCCe
Q 021399 46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG------A------------QLFT-FNFDSPARSVDFAVGDK 106 (313)
Q Consensus 46 ~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~------~------------~~~~-~~~~~~~~~~~~~~~~~ 106 (313)
..+..|.+++.+.+|++||.+++|||.|-.|||.|++.. + .+.+ +.+..++..+.|+|.+.
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ 185 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET 185 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh
Confidence 456789999999999999999999999999999998621 0 1122 12445778899999887
Q ss_pred EEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecc
Q 021399 107 LAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD 185 (313)
Q Consensus 107 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~ 185 (313)
+++... +....+ .+...... .+....+ ....++.++.|+|.|++++.|.+..+++|||+++-++.-.-.
T Consensus 186 ILiS~srD~tvKl------FDfsK~sa---KrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan 255 (430)
T KOG0640|consen 186 ILISGSRDNTVKL------FDFSKTSA---KRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN 255 (430)
T ss_pred eEEeccCCCeEEE------EecccHHH---HHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC
Confidence 776543 322222 11111000 0000011 113468899999999999999999999999999988866556
Q ss_pred cccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec---CCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399 186 KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262 (313)
Q Consensus 186 ~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (313)
....|.+.|+++.+++.|+..+++|.||.|++||--+++|++++.. ...+.+..|..++.+++.+|.+. .+.+|.
T Consensus 256 Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS--~vkLWE 333 (430)
T KOG0640|consen 256 PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDS--TVKLWE 333 (430)
T ss_pred cccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcc--eeeeee
Confidence 6678999999999999999999999999999999999999998852 44688899999999988876543 344555
Q ss_pred cCCCc
Q 021399 263 HRAGK 267 (313)
Q Consensus 263 ~~~~~ 267 (313)
...++
T Consensus 334 i~t~R 338 (430)
T KOG0640|consen 334 ISTGR 338 (430)
T ss_pred ecCCc
Confidence 44443
No 124
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=6.5e-20 Score=145.30 Aligned_cols=253 Identities=17% Similarity=0.270 Sum_probs=168.8
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc----EEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEEEE
Q 021399 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLW 79 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~----~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~vW 79 (313)
-.+|.+-|+|+.|++.|+++++||.|.+++|||.++.. +-...+.|.++|+.+.|.+. |+.+++++.|++++||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 46899999999999999999999999999999975443 34567899999999999643 8999999999999999
Q ss_pred ECCCCe---------EEEEe-cCCCCeeEEEeec---CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEE-EecCC
Q 021399 80 NVETGA---------QLFTF-NFDSPARSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILKGP 145 (313)
Q Consensus 80 d~~~~~---------~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 145 (313)
.-...+ ...++ .....+..+.|.| +-+++.+..++...+.......++.+.........+. ....+
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 752111 11122 3456788888887 4566666666655444433332222211111111111 01123
Q ss_pred CCceEEEEEccC---CCEEEEeeCC-----CeEEEEECCCC-ceeeecccccCceeceEEEEECCCC----CEEEEeeCC
Q 021399 146 QGRINRAVWGPL---NRTIISAGED-----AIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADG----SHFLTGSLD 212 (313)
Q Consensus 146 ~~~i~~~~~~~~---~~~i~t~~~d-----~~i~lwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~----~~l~s~s~d 212 (313)
..+..++.|+|. .++|+.|+.+ +.+.||..... .....+....+|...|++++|.|+- ..||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 456678889865 3578877755 47889986543 3555566667899999999999963 359999999
Q ss_pred CcEEEEECCCC--------------------cEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEee
Q 021399 213 KSAKLWDARTL--------------------ELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTT 261 (313)
Q Consensus 213 g~i~iwd~~~~--------------------~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 261 (313)
| |+||+++.. +.+..+. +...+=.+.|+-.|.. +++.|+|+ .+.+|
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGti-LsStGdDG-~VRLW 315 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTI-LSSTGDDG-CVRLW 315 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeE-EeecCCCc-eeeeh
Confidence 9 999998741 1122222 2346777888877654 44444443 34443
No 125
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=5.8e-21 Score=154.93 Aligned_cols=208 Identities=21% Similarity=0.357 Sum_probs=158.0
Q ss_pred ccccccceeEEEEccCC--CEEEEeeCCCCeEEEeCCC----------------CcEEEEecCCCCceEEEEECCCCC-e
Q 021399 6 MKGHERPLTYLKYNKDG--DLLFSCAKDHTPTVWFADN----------------GERLGTYRGHNGAVWCCDVSRDSM-T 66 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g--~~l~s~s~d~~i~iw~~~~----------------~~~~~~~~~H~~~V~~~~~~~~~~-~ 66 (313)
..+|.+.++-++-++-| .+.++=+..|.|+||++.. .+.+.++.+|.+.=++++|||-.. .
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 34577777777777655 4566667889999998763 245778899999999999999432 5
Q ss_pred EEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCC
Q 021399 67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 146 (313)
Q Consensus 67 l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (313)
|+||..-+.|++|.+.++.=. .. ...+.+|.
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~--vd-----------------------------------------------~~Pf~gH~ 257 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWK--VD-----------------------------------------------QRPFTGHT 257 (440)
T ss_pred cccCccccceEeeeeccCcee--ec-----------------------------------------------Cccccccc
Confidence 788888899999987764310 00 01123577
Q ss_pred CceEEEEEccCC-CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC---
Q 021399 147 GRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART--- 222 (313)
Q Consensus 147 ~~i~~~~~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~--- 222 (313)
..|-.++|+|.. ..|++|+-|+.|+|||++++..-..+. ...|...|+.+.|+.+-.+||+|+.||+++|||+|.
T Consensus 258 ~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~ 336 (440)
T KOG0302|consen 258 KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKS 336 (440)
T ss_pred cchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccC
Confidence 778889999875 578999999999999999873222211 146999999999999988999999999999999986
Q ss_pred CcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccC
Q 021399 223 LELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR 264 (313)
Q Consensus 223 ~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 264 (313)
++++.++. +..+|.++.|+|....+++++|.| ..+.+||..
T Consensus 337 ~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D-~QitiWDls 378 (440)
T KOG0302|consen 337 GQPVATFKYHKAPITSIEWHPHEDSVIAASGED-NQITIWDLS 378 (440)
T ss_pred CCcceeEEeccCCeeEEEeccccCceEEeccCC-CcEEEEEee
Confidence 45677775 577999999999998888776655 456667643
No 126
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=7.6e-21 Score=165.68 Aligned_cols=239 Identities=19% Similarity=0.242 Sum_probs=186.0
Q ss_pred cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC---CCeEEEeeCCCcEEEEECCCC-
Q 021399 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD---SMTLITGSADQTAKLWNVETG- 84 (313)
Q Consensus 9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~---~~~l~s~s~D~~v~vWd~~~~- 84 (313)
..-++.+++.||+|++|++|..-|.++||++...+....+++|+.+|.|+.|+.. .++|+++|.|..|.|+|+...
T Consensus 458 ~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 458 SRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred cccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 4557899999999999999999999999999988888889999999999999842 469999999999999998653
Q ss_pred eEEEEec-CCCCeeEEEeec-C--CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC----CCCceEEEEEcc
Q 021399 85 AQLFTFN-FDSPARSVDFAV-G--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG----PQGRINRAVWGP 156 (313)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~ 156 (313)
.+++++. +...+.++.|.. + .+++....++.+.+.. .+ ..+.-.....+ ....++++...|
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~-------~q----k~~~g~~f~r~t~t~~ktTlYDm~Vdp 606 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRV-------NQ----KASSGRLFPRHTQTLSKTTLYDMAVDP 606 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhheeh-------hc----cccCceeccccccccccceEEEeeeCC
Confidence 2333332 456778888764 3 2333333333221100 00 00011111111 134678899999
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCce
Q 021399 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPV 235 (313)
Q Consensus 157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~ 235 (313)
..+++++++.|..|+|||+++++..+.+....+|.+....+...|.|.|+++.+.|.++-++|.-+++|+.+.. +...+
T Consensus 607 ~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~V 686 (1080)
T KOG1408|consen 607 TSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAV 686 (1080)
T ss_pred CcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchhe
Confidence 99999999999999999999999998888888899999999999999999999999999999999999997765 55678
Q ss_pred eEEEeccCCCEEEEcccccCcee
Q 021399 236 NAVTMSPLLDHVVLGGGQDASAV 258 (313)
Q Consensus 236 ~~~~~~p~~~~~~~~~~~~~~~~ 258 (313)
..+.|.++..+++...|+...++
T Consensus 687 TG~kF~nDCkHlISvsgDgCIFv 709 (1080)
T KOG1408|consen 687 TGVKFLNDCKHLISVSGDGCIFV 709 (1080)
T ss_pred eeeeecccchhheeecCCceEEE
Confidence 99999999999988777554443
No 127
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=2.4e-20 Score=161.89 Aligned_cols=259 Identities=23% Similarity=0.334 Sum_probs=191.1
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE--EEEecCCCCceEE-EEECC-CCCeEEEeeCCCcEEEE
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWC-CDVSR-DSMTLITGSADQTAKLW 79 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~--~~~~~~H~~~V~~-~~~~~-~~~~l~s~s~D~~v~vW 79 (313)
..|.||...|..+++.+ +-.++++|.||++++|+-...+- ...+.+|.+-|.. +++-+ ++-.+++|+.|.++.+|
T Consensus 8 ~~l~gH~~DVr~v~~~~-~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~ 86 (745)
T KOG0301|consen 8 HELEGHKSDVRAVAVTD-GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVF 86 (745)
T ss_pred EEeccCccchheeEecC-CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEE
Confidence 36889999998888764 45899999999999998755543 3467888888876 77765 44469999999999999
Q ss_pred ECCCCeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399 80 NVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (313)
Q Consensus 80 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (313)
.+....+..++. +...+++++...+..++..+.+....+ |.+ ++....+.+|+..|..+..-|..
T Consensus 87 ~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~Takv------W~~--------~~l~~~l~gH~asVWAv~~l~e~ 152 (745)
T KOG0301|consen 87 KLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKV------WRI--------GELVYSLQGHTASVWAVASLPEN 152 (745)
T ss_pred ecCCCCchhhhhccccceeeeecCCcCceEecccccceEE------ecc--------hhhhcccCCcchheeeeeecCCC
Confidence 999988877664 566777777666666555555543332 221 34455688999999988888877
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeE
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA 237 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~ 237 (313)
.++||+.|.+|++|.- +++++++. +|.+.|+.+++-+++ .++|++.||.|++|++ +++++.+.. +..-+.+
T Consensus 153 -~~vTgsaDKtIklWk~--~~~l~tf~---gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYs 224 (745)
T KOG0301|consen 153 -TYVTGSADKTIKLWKG--GTLLKTFS---GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYS 224 (745)
T ss_pred -cEEeccCcceeeeccC--Cchhhhhc---cchhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeeccceEEEE
Confidence 7999999999999985 45666654 799999999998775 4899999999999999 677777765 4556888
Q ss_pred EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccccc-ceeEEEECCCCCe
Q 021399 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG-PINALAFNPDGKR 302 (313)
Q Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~~fspdgk~ 302 (313)
+++.+.++.+ +++|.|. .+++|+.. .+.+.+. |++ -||++.+=++|.+
T Consensus 225 is~~~~~~~I-vs~gEDr-------------tlriW~~~--e~~q~I~-lPttsiWsa~~L~NgDI 273 (745)
T KOG0301|consen 225 ISMALSDGLI-VSTGEDR-------------TLRIWKKD--ECVQVIT-LPTTSIWSAKVLLNGDI 273 (745)
T ss_pred EEecCCCCeE-EEecCCc-------------eEEEeecC--ceEEEEe-cCccceEEEEEeeCCCE
Confidence 8865555544 4445553 24666654 2333332 444 7888888777766
No 128
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.87 E-value=1.1e-20 Score=150.49 Aligned_cols=223 Identities=21% Similarity=0.351 Sum_probs=170.6
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCC------C----------------------------------CcE
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD------N----------------------------------GER 44 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~------~----------------------------------~~~ 44 (313)
...||.++|+++.|++.+.+++++|.|++..||... . ..+
T Consensus 185 ~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvP 264 (481)
T KOG0300|consen 185 TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVP 264 (481)
T ss_pred eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeee
Confidence 568999999999999999999999999999999611 1 012
Q ss_pred EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccce
Q 021399 45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIH 123 (313)
Q Consensus 45 ~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (313)
+..|.+|.+.|.+..|-..|+.++|+|+|.+..+||+++++.+..+. +......+..+|...+++.++. +...+
T Consensus 265 l~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSr-----DtTFR 339 (481)
T KOG0300|consen 265 LMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSR-----DTTFR 339 (481)
T ss_pred eeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEecc-----CceeE
Confidence 44678999999999999999999999999999999999999887775 3445555566677777666543 22233
Q ss_pred eeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCc-eeeecccccCceeceEEEEECCC
Q 021399 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAAD 202 (313)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~ 202 (313)
+|+.. .....+.++.||...++++.|..+. .+++|++|.+|++||+++.. ++.++. -...++.++.+..
T Consensus 340 LWDFR-----eaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~NRvavs~g 409 (481)
T KOG0300|consen 340 LWDFR-----EAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR----TDSPANRVAVSKG 409 (481)
T ss_pred eccch-----hhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee----cCCccceeEeecC
Confidence 44332 2345678899999999999999865 48999999999999997643 344443 3457888999888
Q ss_pred CCEEEEeeCCCcEEEEECCCCcEEEEE-----ecCCceeEEEecc
Q 021399 203 GSHFLTGSLDKSAKLWDARTLELIKTY-----VTERPVNAVTMSP 242 (313)
Q Consensus 203 ~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~p 242 (313)
+..|+.--.+..|++||+....+.+.. -+.+.+.|++|..
T Consensus 410 ~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~e 454 (481)
T KOG0300|consen 410 HPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLE 454 (481)
T ss_pred CceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccc
Confidence 888888888889999999865543322 1345688888854
No 129
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.87 E-value=8.2e-20 Score=153.43 Aligned_cols=196 Identities=22% Similarity=0.329 Sum_probs=151.7
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE-----------EE-----------------------------
Q 021399 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-----------LG----------------------------- 46 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~-----------~~----------------------------- 46 (313)
..|.+.|.+|+.-.+|.+| ||+.|..|..||-.-.+. ++
T Consensus 284 ~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~ 362 (626)
T KOG2106|consen 284 HAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTL 362 (626)
T ss_pred eecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceE
Confidence 3899999999999999655 499999999998321100 00
Q ss_pred EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeee
Q 021399 47 TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 126 (313)
Q Consensus 47 ~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (313)
+..+|..+.|.++.+|+.++++|+++|+.+++|+ +.+++++.....+..++.|+|-+.+++......+.+...
T Consensus 363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~----- 435 (626)
T KOG2106|consen 363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDT----- 435 (626)
T ss_pred EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEec-----
Confidence 1147888999999999999999999999999999 677888888889999999999776655544332211110
Q ss_pred eeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECC-CCceeeecccccCceeceEEEEECCCCCE
Q 021399 127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKAADGSH 205 (313)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~~~~~ 205 (313)
.....+..... .++++.+.++|+|.+||.|+.|+.|+||-+. ++..+.+.....+ ..|+.+.||+|+++
T Consensus 436 -------e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~ 505 (626)
T KOG2106|consen 436 -------ETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQF 505 (626)
T ss_pred -------ccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCce
Confidence 01123333333 7789999999999999999999999999874 4556666655444 89999999999999
Q ss_pred EEEeeCCCcEEEEEC
Q 021399 206 FLTGSLDKSAKLWDA 220 (313)
Q Consensus 206 l~s~s~dg~i~iwd~ 220 (313)
+.+.+-|-.|..|..
T Consensus 506 ~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 506 LVSNSGDYEILYWKP 520 (626)
T ss_pred EEeccCceEEEEEcc
Confidence 999999999999943
No 130
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=2.6e-20 Score=161.64 Aligned_cols=285 Identities=16% Similarity=0.255 Sum_probs=194.5
Q ss_pred ccccccccceeEEEEccCCC---EEEEeeCCCCeEEEeCCCCc---------------------EE----------EEec
Q 021399 4 ILMKGHERPLTYLKYNKDGD---LLFSCAKDHTPTVWFADNGE---------------------RL----------GTYR 49 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~---~l~s~s~d~~i~iw~~~~~~---------------------~~----------~~~~ 49 (313)
..|.||++-|.+++|...+. +|+|+|+|..||||.+.-+. .. ..+.
T Consensus 185 ~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~ 264 (764)
T KOG1063|consen 185 AELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLM 264 (764)
T ss_pred EEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhc
Confidence 46899999999999987654 89999999999999654222 01 1124
Q ss_pred CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe-----cCCC---CeeEEEeecCCeEEEEECCCceecccc
Q 021399 50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-----NFDS---PARSVDFAVGDKLAVITTDPFMELNSA 121 (313)
Q Consensus 50 ~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (313)
||++-|.++.|+|.+..|+|+|.|.++.+|...+..-++.- .... .-....|.+...+++.... .+.
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~-----~Gg 339 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR-----TGG 339 (764)
T ss_pred CcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecc-----cCc
Confidence 99999999999999989999999999999998776443322 1211 1233445555433333211 122
Q ss_pred ceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECC-CCceeeecccccCceeceEEEEEC
Q 021399 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKA 200 (313)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~-~~~~~~~~~~~~~h~~~v~~~~~s 200 (313)
.+.|. ......=.+.....||...|.++.|+|.|+++++.|.|-+=||+-.- ......++....-|...++|+++-
T Consensus 340 ~hlWk---t~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 340 FHLWK---TKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred EEEEe---ccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence 22332 00000001223457899999999999999999999999999998754 222233444444688999999998
Q ss_pred CCCCEEEEeeCCCcEEEEECCCC--------------------------------cE---------------EEEE----
Q 021399 201 ADGSHFLTGSLDKSAKLWDARTL--------------------------------EL---------------IKTY---- 229 (313)
Q Consensus 201 ~~~~~l~s~s~dg~i~iwd~~~~--------------------------------~~---------------~~~~---- 229 (313)
+....+++|....-+|+|+.... +. ..+.
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 75567888888888888864210 00 0000
Q ss_pred --------------------------ecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcc
Q 021399 230 --------------------------VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 283 (313)
Q Consensus 230 --------------------------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (313)
-+...+.+++.+|.++.++.++.+... ....|++|+..+....+.
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~---------ehAvI~lw~t~~W~~~~~ 567 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLK---------EHAVIRLWNTANWLQVQE 567 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCc---------cceEEEEEeccchhhhhe
Confidence 011136788888888877766544321 233578899888888889
Q ss_pred ccccccceeEEEECCCCCeeEE
Q 021399 284 VKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 284 ~~~h~~~V~~~~fspdgk~~~~ 305 (313)
+.+|+-+|+.|+||||||++.-
T Consensus 568 L~~HsLTVT~l~FSpdg~~LLs 589 (764)
T KOG1063|consen 568 LEGHSLTVTRLAFSPDGRYLLS 589 (764)
T ss_pred ecccceEEEEEEECCCCcEEEE
Confidence 9999999999999999999753
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.2e-18 Score=151.07 Aligned_cols=234 Identities=18% Similarity=0.260 Sum_probs=175.3
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-EEEEecCCC-CceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-~~~~~~~H~-~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~ 88 (313)
.+|.+++|+.+.+.||.+-.||.|.||++..+= +..++.+++ ..|.+++|++ +..|+|.+.+|.|.-||+.+.++..
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk~~~ 104 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLKQKY 104 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCceeE
Confidence 468899999999999999999999999988763 455677765 5799999995 5567899999999999999998887
Q ss_pred EecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399 89 TFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (313)
Q Consensus 89 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d 167 (313)
.... ..++-+++.+|.+..+.+.++.-....-.+....+.. -..+.--.+++.++.|+|++..+++|+.|
T Consensus 105 ~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~---------~r~l~rq~sRvLslsw~~~~~~i~~Gs~D 175 (691)
T KOG2048|consen 105 NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY---------KRSLMRQKSRVLSLSWNPTGTKIAGGSID 175 (691)
T ss_pred EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEE---------EeecccccceEEEEEecCCccEEEecccC
Confidence 7654 5677788888877666666543211111111111111 01111124789999999999999999999
Q ss_pred CeEEEEECCCCceeeec----cc-ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEec
Q 021399 168 AIVRIWDTETGKLLKES----DK-ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMS 241 (313)
Q Consensus 168 ~~i~lwd~~~~~~~~~~----~~-~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 241 (313)
|.|++||..++..+... .. ..+..-.|+++.+-.++ .|++|.+-|+|++||...+.+++.+. +...+.+++..
T Consensus 176 g~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~ 254 (691)
T KOG2048|consen 176 GVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVA 254 (691)
T ss_pred ceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEc
Confidence 99999999988765411 11 11234568888887664 69999999999999999999888775 56789999999
Q ss_pred cCCCEEEEcccccC
Q 021399 242 PLLDHVVLGGGQDA 255 (313)
Q Consensus 242 p~~~~~~~~~~~~~ 255 (313)
+..+.++.+|-+..
T Consensus 255 ~~~d~vfsaGvd~~ 268 (691)
T KOG2048|consen 255 DNEDRVFSAGVDPK 268 (691)
T ss_pred CCCCeEEEccCCCc
Confidence 99999888765543
No 132
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.86 E-value=4.5e-20 Score=160.92 Aligned_cols=256 Identities=18% Similarity=0.248 Sum_probs=186.6
Q ss_pred EEEEeeCCCCeEEEeCCCCc---EEEE--e--------------------------------cCCCCceEEEEECCCCCe
Q 021399 24 LLFSCAKDHTPTVWFADNGE---RLGT--Y--------------------------------RGHNGAVWCCDVSRDSMT 66 (313)
Q Consensus 24 ~l~s~s~d~~i~iw~~~~~~---~~~~--~--------------------------------~~H~~~V~~~~~~~~~~~ 66 (313)
-+++||.|++||+|+++.+. .++. + -+-+..+.+++++|+|+.
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqh 473 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQH 473 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcce
Confidence 48999999999999988532 1110 0 012335899999999999
Q ss_pred EEEeeCCCcEEEEECCCCeEEEEec-CCCCeeEEEeecC---CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe
Q 021399 67 LITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142 (313)
Q Consensus 67 l~s~s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (313)
|++|..-|+++|+++.+-+..+... +...+.++.++.. .++++... .+..+++.++.+. -.++..+
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas-----rdRlIHV~Dv~rn-----y~l~qtl 543 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS-----RDRLIHVYDVKRN-----YDLVQTL 543 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc-----CCceEEEEecccc-----cchhhhh
Confidence 9999999999999998766554443 4566777777642 23322211 1233445544432 2345677
Q ss_pred cCCCCceEEEEEccCC--CEEEEeeCCCeEEEEECCC----CceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEE
Q 021399 143 KGPQGRINRAVWGPLN--RTIISAGEDAIVRIWDTET----GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 216 (313)
Q Consensus 143 ~~~~~~i~~~~~~~~~--~~i~t~~~d~~i~lwd~~~----~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~ 216 (313)
.+|.+.|+++.|-..| ..++++|.|..|. |+... +....+- ........+.+++..|..+++++++.|..|+
T Consensus 544 d~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~-t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 544 DGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRH-TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred cccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceecccc-ccccccceEEEeeeCCCcceEEEEecccceE
Confidence 8999999999998776 7899999998763 44433 2222111 1112346788999999999999999999999
Q ss_pred EEECCCCcEEEEEec----CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccccccee
Q 021399 217 LWDARTLELIKTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPIN 292 (313)
Q Consensus 217 iwd~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 292 (313)
|||+++++..+.+.. +.....+...|.+.+++.++.+.. +.++|-.+++++..+.||++.|+
T Consensus 622 if~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdkt--------------l~~~Df~sgEcvA~m~GHsE~VT 687 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKT--------------LCFVDFVSGECVAQMTGHSEAVT 687 (1080)
T ss_pred EEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCc--------------eEEEEeccchhhhhhcCcchhee
Confidence 999999999999864 345777889999999888776543 45677788999999999999999
Q ss_pred EEEECCCCCeeEE
Q 021399 293 ALAFNPDGKRYGF 305 (313)
Q Consensus 293 ~~~fspdgk~~~~ 305 (313)
.+.|.+|-|.+-.
T Consensus 688 G~kF~nDCkHlIS 700 (1080)
T KOG1408|consen 688 GVKFLNDCKHLIS 700 (1080)
T ss_pred eeeecccchhhee
Confidence 9999999988643
No 133
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=6.7e-21 Score=167.18 Aligned_cols=198 Identities=18% Similarity=0.298 Sum_probs=154.1
Q ss_pred cccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECC
Q 021399 5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~ 82 (313)
++..|+..++++.|++.- .+|+|||+||.|++||+.......++.+...+|..+.|+|. +..|+++...|.+++||++
T Consensus 128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR 207 (839)
T KOG0269|consen 128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR 207 (839)
T ss_pred HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence 678899999999999764 68999999999999999999888899998899999999984 6799999999999999998
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
.... ....+..|.+++.++.|+|++.+||
T Consensus 208 qp~r---------------------------------------------------~~~k~~AH~GpV~c~nwhPnr~~lA 236 (839)
T KOG0269|consen 208 QPDR---------------------------------------------------CEKKLTAHNGPVLCLNWHPNREWLA 236 (839)
T ss_pred Cchh---------------------------------------------------HHHHhhcccCceEEEeecCCCceee
Confidence 5321 1123356899999999999999999
Q ss_pred EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCE-EEEeeC--CCcEEEEECCCC-cEEEEEec-CCceeE
Q 021399 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSL--DKSAKLWDARTL-ELIKTYVT-ERPVNA 237 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~--dg~i~iwd~~~~-~~~~~~~~-~~~~~~ 237 (313)
|||.|++|+|||+.+.+....... .-...+.+|.|-|...+ |++++. |..|++||++.. -+..++.. ...+..
T Consensus 237 TGGRDK~vkiWd~t~~~~~~~~tI--nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~ 314 (839)
T KOG0269|consen 237 TGGRDKMVKIWDMTDSRAKPKHTI--NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTG 314 (839)
T ss_pred ecCCCccEEEEeccCCCccceeEE--eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccc
Confidence 999999999999986543222111 12357889999997664 676664 788999999864 44555543 345677
Q ss_pred EEeccCCCEEEEcccccC
Q 021399 238 VTMSPLLDHVVLGGGQDA 255 (313)
Q Consensus 238 ~~~~p~~~~~~~~~~~~~ 255 (313)
++|......++.+++.|+
T Consensus 315 i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 315 IAWDSGDRINLWSCSKDG 332 (839)
T ss_pred eeccCCCceeeEeecCcc
Confidence 888665455555555554
No 134
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=1.1e-19 Score=160.93 Aligned_cols=196 Identities=21% Similarity=0.305 Sum_probs=162.5
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEe---cCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeE
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY---RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~---~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~ 86 (313)
...+.+++.++=|++.+-|+..|.|-+++...|...+.+ .+|.++|..++...-++.++|++.||.+++||......
T Consensus 448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l 527 (910)
T KOG1539|consen 448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL 527 (910)
T ss_pred CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce
Confidence 356889999999999999999999999999999999998 58999999999998889999999999999999887654
Q ss_pred EEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC
Q 021399 87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (313)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~ 166 (313)
+....... .+..+..+.....++.+.+
T Consensus 528 ~~~l~l~~-----------------------------------------------------~~~~iv~hr~s~l~a~~~d 554 (910)
T KOG1539|consen 528 KKSLRLGS-----------------------------------------------------SITGIVYHRVSDLLAIALD 554 (910)
T ss_pred eeeeccCC-----------------------------------------------------CcceeeeeehhhhhhhhcC
Confidence 32222111 1222223333456788889
Q ss_pred CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCE
Q 021399 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDH 246 (313)
Q Consensus 167 d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~ 246 (313)
|-.|+++|..+.+..+++. +|...|++++|||||++|++++.|++||+||+.++.++..+..+.++..+.|+|.++.
T Consensus 555 df~I~vvD~~t~kvvR~f~---gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~ 631 (910)
T KOG1539|consen 555 DFSIRVVDVVTRKVVREFW---GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDF 631 (910)
T ss_pred ceeEEEEEchhhhhhHHhh---ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCE
Confidence 9999999999887777654 7999999999999999999999999999999999999999998999999999999999
Q ss_pred EEEcccccCceeEeec
Q 021399 247 VVLGGGQDASAVTTTD 262 (313)
Q Consensus 247 ~~~~~~~~~~~~~~~~ 262 (313)
++++-- |.+-+++|-
T Consensus 632 LAT~Hv-d~~gIylWs 646 (910)
T KOG1539|consen 632 LATVHV-DQNGIYLWS 646 (910)
T ss_pred EEEEEe-cCceEEEEE
Confidence 887643 334455554
No 135
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=1.7e-20 Score=157.30 Aligned_cols=221 Identities=14% Similarity=0.222 Sum_probs=169.4
Q ss_pred eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCC
Q 021399 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD 93 (313)
Q Consensus 14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~ 93 (313)
.|+.......++++|+..+.|+|||+......+.+++|...|+++.++-...++++++..|-|.|-.+.++.....+...
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecC
Confidence 45555555689999999999999999977777889999999999999988899999999999999988876543322211
Q ss_pred CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC-EEEEeeCCCeEEE
Q 021399 94 SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRI 172 (313)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~i~t~~~d~~i~l 172 (313)
+++ .+.-+.++|..+ .+.+++++|.|.|
T Consensus 163 -----------------------------------------sgq----------svRll~ys~skr~lL~~asd~G~Vtl 191 (673)
T KOG4378|consen 163 -----------------------------------------SGQ----------SVRLLRYSPSKRFLLSIASDKGAVTL 191 (673)
T ss_pred -----------------------------------------CCC----------eEEEeecccccceeeEeeccCCeEEE
Confidence 011 112333455444 4567899999999
Q ss_pred EECCCCceeeecccccCceeceEEEEECCC-CCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcc
Q 021399 173 WDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 173 wd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 251 (313)
||+....++... ...|......++|+|- ...|++.+.|..|.+||.+..+....+..+.|..+++|.+.|.+++++.
T Consensus 192 wDv~g~sp~~~~--~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 192 WDVQGMSPIFHA--SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred EeccCCCcccch--hhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeec
Confidence 999876665433 3469999999999985 4578899999999999999999989888889999999999998877654
Q ss_pred cccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCC
Q 021399 252 GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300 (313)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg 300 (313)
.. +-++.+|.|. +..++..+.+|...|++|+|-|-.
T Consensus 270 s~--G~~i~YD~R~-----------~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 270 SK--GELIAYDMRS-----------TKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CC--ceEEEEeccc-----------CCCCceEeeecccceeEEEeeecc
Confidence 32 2344444333 234566788999999999998764
No 136
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=5.1e-20 Score=158.57 Aligned_cols=255 Identities=19% Similarity=0.246 Sum_probs=164.3
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEE--ecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECC
Q 021399 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE 82 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~--~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~ 82 (313)
...|...|..+.|-|-...|++++.|.+++.||++.+++... +.||.+.|-+++|.|.+ ..|++|++||.+.|||++
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R 175 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR 175 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence 457999999999999667999999999999999999998877 99999999999999876 489999999999999986
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEE---EEEccCCC
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR---AVWGPLNR 159 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~ 159 (313)
....-....+...+.. - ..+.+ .+.............+.+.|.+ +.+..++.
T Consensus 176 ~n~~d~~e~~~~~~~~--~--------~n~~p---------------tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~ 230 (720)
T KOG0321|consen 176 CNGVDALEEFDNRIYG--R--------HNTAP---------------TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES 230 (720)
T ss_pred ccchhhHHHHhhhhhc--c--------ccCCC---------------CCCchhhccccccccccCceeeeeEEEEEeccc
Confidence 5331000000000000 0 00000 0000001111122334444444 55667778
Q ss_pred EEEEeeC-CCeEEEEECCCCceeeecccc-----cCc---eeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc--EEEE
Q 021399 160 TIISAGE-DAIVRIWDTETGKLLKESDKE-----TGH---KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE--LIKT 228 (313)
Q Consensus 160 ~i~t~~~-d~~i~lwd~~~~~~~~~~~~~-----~~h---~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~~~ 228 (313)
.+|++|. |+.|++||++.....-+.... .-| .-.+.++.....|.+|.+.+.|+.|++||+.+.. ++..
T Consensus 231 tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~ 310 (720)
T KOG0321|consen 231 TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAE 310 (720)
T ss_pred eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhh
Confidence 8999988 999999999875543222211 112 4467888888889999888889999999998753 2333
Q ss_pred EecCC---ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehh-hhhhhccccccccceeEEEECCC
Q 021399 229 YVTER---PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI-LQEEIGGVKGHFGPINALAFNPD 299 (313)
Q Consensus 229 ~~~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~~~fspd 299 (313)
+.+.. .-..-..+|++.+++.+.. +.. .+ +|... .......+.||.-.|++++|.|-
T Consensus 311 ~sg~~~~sf~vks~lSpd~~~l~SgSs-d~~-ay------------iw~vs~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 311 FSGKLNSSFYVKSELSPDDCSLLSGSS-DEQ-AY------------IWVVSSPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred ccCcccceeeeeeecCCCCceEeccCC-Ccc-ee------------eeeecCccCChhhhhCcceEEEEEeeccc
Confidence 22211 1122345788777665433 332 22 23321 12234457799999999999875
No 137
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=5.7e-20 Score=148.53 Aligned_cols=232 Identities=19% Similarity=0.276 Sum_probs=167.5
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
.+++.|.+.|..++++. ..+++++.|.+|+.|-.+- ..++++-+ ...+..+.-+..+..|+|||. .|.|||...
T Consensus 103 ~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R 176 (433)
T KOG0268|consen 103 RTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKNSVFATCGE--QIDIWDEQR 176 (433)
T ss_pred heeecccCceeeEEecc--cceEEecCCcceeeeeccC-Ccceeeec-cccccccccccccccccccCc--eeeeccccc
Confidence 47899999999999987 7899999999999997654 35666654 456777777777789999986 588999987
Q ss_pred CeEEEEecCC-CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 84 GAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
..++..+... ..+.++.|.|-+..+++++.. +..+.+.+.-.. ..-....+ ..+-+.++|+|..-.|+
T Consensus 177 ~~Pv~smswG~Dti~svkfNpvETsILas~~s----DrsIvLyD~R~~----~Pl~KVi~---~mRTN~IswnPeafnF~ 245 (433)
T KOG0268|consen 177 DNPVSSMSWGADSISSVKFNPVETSILASCAS----DRSIVLYDLRQA----SPLKKVIL---TMRTNTICWNPEAFNFV 245 (433)
T ss_pred CCccceeecCCCceeEEecCCCcchheeeecc----CCceEEEecccC----Cccceeee---eccccceecCcccccee
Confidence 7777777654 457788888876655554321 111222221110 00011111 23456789999888899
Q ss_pred EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec--CCceeEEEe
Q 021399 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERPVNAVTM 240 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~ 240 (313)
+|++|..++.+|++.-.. .+....+|...|++++|||.|..|+|||.|.+|+||..+.+..-..+.. -+.+.++.|
T Consensus 246 ~a~ED~nlY~~DmR~l~~--p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~ 323 (433)
T KOG0268|consen 246 AANEDHNLYTYDMRNLSR--PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKY 323 (433)
T ss_pred eccccccceehhhhhhcc--cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEE
Confidence 999999999999875332 2334467999999999999999999999999999999988776444432 346899999
Q ss_pred ccCCCEEEEcccccC
Q 021399 241 SPLLDHVVLGGGQDA 255 (313)
Q Consensus 241 ~p~~~~~~~~~~~~~ 255 (313)
+.+..+++. |++|+
T Consensus 324 S~Dskyi~S-GSdd~ 337 (433)
T KOG0268|consen 324 SMDSKYIIS-GSDDG 337 (433)
T ss_pred eccccEEEe-cCCCc
Confidence 998887654 44443
No 138
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=6.2e-20 Score=154.14 Aligned_cols=224 Identities=17% Similarity=0.198 Sum_probs=174.4
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE--EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~--~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~ 87 (313)
...+.++...|||+.|++|+.-.++.|||+...+. ..++..-.-.-.+++.+||.+++++|..||.|.|||+....
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-- 542 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-- 542 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce--
Confidence 45688899999999999999999999999987654 33444434456788999999999999999999999987642
Q ss_pred EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (313)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d 167 (313)
.+..+.||...+.++.++++|..|.|||-|
T Consensus 543 --------------------------------------------------~VrqfqGhtDGascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 543 --------------------------------------------------LVRQFQGHTDGASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred --------------------------------------------------eeecccCCCCCceeEEecCCCceeecCCCc
Confidence 234567888888999999999999999999
Q ss_pred CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEE
Q 021399 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHV 247 (313)
Q Consensus 168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 247 (313)
.+||.||++.++.++.- .....|.++...|++.+++.|-.++.+.+-.....+.-.--.++.+|.++-|.+.|...
T Consensus 573 ntvRcWDlregrqlqqh----dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwf 648 (705)
T KOG0639|consen 573 NTVRCWDLREGRQLQQH----DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWF 648 (705)
T ss_pred cceeehhhhhhhhhhhh----hhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCcee
Confidence 99999999887655432 24678999999999999999999999888876654443333567889999999999998
Q ss_pred EEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399 248 VLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~ 304 (313)
+..|.++....+...- ...+|.. + -++.|.+..+|.|.|++.
T Consensus 649 vStGkDnlLnawrtPy-----GasiFqs---------k-E~SsVlsCDIS~ddkyIV 690 (705)
T KOG0639|consen 649 VSTGKDNLLNAWRTPY-----GASIFQS---------K-ESSSVLSCDISFDDKYIV 690 (705)
T ss_pred eecCchhhhhhccCcc-----ccceeec---------c-ccCcceeeeeccCceEEE
Confidence 8877665443332221 1222221 1 367999999999988753
No 139
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=5.1e-19 Score=153.42 Aligned_cols=261 Identities=15% Similarity=0.219 Sum_probs=180.0
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~ 91 (313)
.|+.++|-|||..|+.+.. ..+.+||..+|.++.++++|.+-|.|++|+.||+.|+||+.|+.|.+|+..- +-+..+.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl-EG~LkYS 91 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL-EGILKYS 91 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccc-cceeeec
Confidence 6899999999998886654 5789999999999999999999999999999999999999999999998542 2344556
Q ss_pred CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEE
Q 021399 92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 171 (313)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~ 171 (313)
+...+.++.|.|=.+.++...-. ...+|.... +.+... -...++.+++|..+|.+++.|-.+|+|.
T Consensus 92 H~D~IQCMsFNP~~h~LasCsLs------dFglWS~~q-------K~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIs 157 (1081)
T KOG1538|consen 92 HNDAIQCMSFNPITHQLASCSLS------DFGLWSPEQ-------KSVSKH-KSSSRIICCSWTNDGQYLALGMFNGTIS 157 (1081)
T ss_pred cCCeeeEeecCchHHHhhhcchh------hccccChhh-------hhHHhh-hhheeEEEeeecCCCcEEEEeccCceEE
Confidence 66777788877744332221100 011111100 000000 0134788999999999999999999999
Q ss_pred EEECCCCceeeecccccCceeceEEEEECCCCC-----EEEEeeCCCcEEEEECCCCcEEE-EEecCCceeEEEeccCCC
Q 021399 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGS-----HFLTGSLDKSAKLWDARTLELIK-TYVTERPVNAVTMSPLLD 245 (313)
Q Consensus 172 lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-----~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~p~~~ 245 (313)
|-+.. ++.--.+...-+.+..|.+++|+|... .++......++.++.+. |+.+. .-..+-...|+++-|.|.
T Consensus 158 iRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGE 235 (1081)
T KOG1538|consen 158 IRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGE 235 (1081)
T ss_pred eecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCc
Confidence 88643 333222333345678999999998643 46667777777777664 33332 222334567888999999
Q ss_pred EEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
+++++|++....++.-+ +..++.+-....+||.++..|+|+..+.
T Consensus 236 y~LiGGsdk~L~~fTR~---------------GvrLGTvg~~D~WIWtV~~~PNsQ~v~~ 280 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFTRD---------------GVRLGTVGEQDSWIWTVQAKPNSQYVVV 280 (1081)
T ss_pred EEEEccCCCceEEEeec---------------CeEEeeccccceeEEEEEEccCCceEEE
Confidence 99998876554333222 2223333334679999999999998654
No 140
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.84 E-value=1.5e-19 Score=148.00 Aligned_cols=173 Identities=23% Similarity=0.365 Sum_probs=135.8
Q ss_pred cceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCc---------EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399 11 RPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGE---------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (313)
Q Consensus 11 ~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~---------~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd 80 (313)
.+|+.+.|.+++. +|+||+.|..|+||-++.+. -+..+..|..+|+++.|+|+|++|+||+.+|.|.+|-
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 3789999999987 99999999999999665332 2456789999999999999999999999999999998
Q ss_pred CCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (313)
...- .+ . +.+. ....+ . ..-...+.+.+|...|..++|+|++.+
T Consensus 94 ~~~~-~~--~------------~~d~--------e~~~~--k-----------e~w~v~k~lr~h~~diydL~Ws~d~~~ 137 (434)
T KOG1009|consen 94 QGDV-RI--F------------DADT--------EADLN--K-----------EKWVVKKVLRGHRDDIYDLAWSPDSNF 137 (434)
T ss_pred ecCc-CC--c------------cccc--------hhhhC--c-----------cceEEEEEecccccchhhhhccCCCce
Confidence 6530 00 0 0000 00000 0 000123456678899999999999999
Q ss_pred EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (313)
Q Consensus 161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (313)
+++++-|..+++||+..+..++... .|...+.-++|.|-++++++=+.|...+.+.+..
T Consensus 138 l~s~s~dns~~l~Dv~~G~l~~~~~---dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~ 196 (434)
T KOG1009|consen 138 LVSGSVDNSVRLWDVHAGQLLAILD---DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL 196 (434)
T ss_pred eeeeeccceEEEEEeccceeEeecc---ccccccceeecchhhhhhhhhccCcccceeeeee
Confidence 9999999999999999998877654 6899999999999999999999998777776544
No 141
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=4.1e-19 Score=145.14 Aligned_cols=196 Identities=24% Similarity=0.336 Sum_probs=150.4
Q ss_pred cccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCC-------cEEEEecCCCCceEEEEECCC-CCeEEEeeCCCc
Q 021399 5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQT 75 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~ 75 (313)
++.||+++|..+.|+|- ...|||||.|.+|.||....+ +.+..+.||...|.-++|+|. .+.|+|+|.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 57899999999999985 579999999999999987654 346788999999999999996 468999999999
Q ss_pred EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399 76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (313)
Q Consensus 76 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (313)
|.+||+.+++.... +. |..-|.++.|+
T Consensus 156 v~iWnv~tgeali~----------------------------------------------------l~-hpd~i~S~sfn 182 (472)
T KOG0303|consen 156 VSIWNVGTGEALIT----------------------------------------------------LD-HPDMVYSMSFN 182 (472)
T ss_pred EEEEeccCCceeee----------------------------------------------------cC-CCCeEEEEEec
Confidence 99999998764321 11 66678899999
Q ss_pred cCCCEEEEeeCCCeEEEEECCCCceeeecccccCcee-ceEEEEECCCCCEEEEee---CCCcEEEEECCCCc-E--EEE
Q 021399 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK-TITSLAKAADGSHFLTGS---LDKSAKLWDARTLE-L--IKT 228 (313)
Q Consensus 156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l~s~s---~dg~i~iwd~~~~~-~--~~~ 228 (313)
.+|.+++|.+.|.+|||||.+.++.+.+-. +|.+ .-..+.|-.+|..+-+|- ++.++-+||....+ + +.+
T Consensus 183 ~dGs~l~TtckDKkvRv~dpr~~~~v~e~~---~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e 259 (472)
T KOG0303|consen 183 RDGSLLCTTCKDKKVRVIDPRRGTVVSEGV---AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQE 259 (472)
T ss_pred cCCceeeeecccceeEEEcCCCCcEeeecc---cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEE
Confidence 999999999999999999999999887653 3443 233445667888444443 47889999977643 2 233
Q ss_pred EecCCceeEEEeccCCCEEEEcccccCc
Q 021399 229 YVTERPVNAVTMSPLLDHVVLGGGQDAS 256 (313)
Q Consensus 229 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 256 (313)
+.....+----|.|+...++++|..|++
T Consensus 260 lDtSnGvl~PFyD~dt~ivYl~GKGD~~ 287 (472)
T KOG0303|consen 260 LDTSNGVLLPFYDPDTSIVYLCGKGDSS 287 (472)
T ss_pred eccCCceEEeeecCCCCEEEEEecCCcc
Confidence 3333344445567888888888776654
No 142
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.83 E-value=1.2e-18 Score=151.55 Aligned_cols=274 Identities=17% Similarity=0.291 Sum_probs=175.6
Q ss_pred cccccccceeEEEEccCCC---EEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEe-eCCCcEEE
Q 021399 5 LMKGHERPLTYLKYNKDGD---LLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITG-SADQTAKL 78 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~---~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~-s~D~~v~v 78 (313)
+++||.++|+|+.|-|+.+ .++||+.|+.|++|.+.... .+.++.+|...+.|+.- .....++ ..|+++.+
T Consensus 49 ~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a---~~~~~~~~~ad~~v~v 125 (764)
T KOG1063|consen 49 TLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVA---RSSVMTCKAADGTVSV 125 (764)
T ss_pred eccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEe---eeeEEEeeccCceEEE
Confidence 6899999999999999887 89999999999999888443 46678888777766542 2233444 78999999
Q ss_pred EECCCCeEEE--EecCCC---CeeEEEeecCC-eEEE-EECCC-ceeccccceeeeeeeCCCCCCCceEEEecCCCCceE
Q 021399 79 WNVETGAQLF--TFNFDS---PARSVDFAVGD-KLAV-ITTDP-FMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN 150 (313)
Q Consensus 79 Wd~~~~~~~~--~~~~~~---~~~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (313)
||....+..+ .+.+.. -..++++.+.. .++. ..+.. .+.+ .... ..+-..+..++||...|.
T Consensus 126 w~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~---------~s~~-~d~f~~v~el~GH~DWIr 195 (764)
T KOG1063|consen 126 WDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDL---------YSSS-ADSFARVAELEGHTDWIR 195 (764)
T ss_pred eecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEE---------eccC-CcceeEEEEeeccchhhh
Confidence 9995555221 121111 11222333322 2222 11111 1111 1111 113456788999999999
Q ss_pred EEEEccCCC---EEEEeeCCCeEEEEECCCCc---------------------eeeec-------ccccCceeceEEEEE
Q 021399 151 RAVWGPLNR---TIISAGEDAIVRIWDTETGK---------------------LLKES-------DKETGHKKTITSLAK 199 (313)
Q Consensus 151 ~~~~~~~~~---~i~t~~~d~~i~lwd~~~~~---------------------~~~~~-------~~~~~h~~~v~~~~~ 199 (313)
++.|...+. +++++|.|..||||.+.-+. .+-++ ....||.+.|+++-|
T Consensus 196 sl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W 275 (764)
T KOG1063|consen 196 SLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWW 275 (764)
T ss_pred hhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEE
Confidence 999975543 78999999999999753222 00011 113589999999999
Q ss_pred CCCCCEEEEeeCCCcEEEEECCCCc--EEEEEec---CC---ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeee
Q 021399 200 AADGSHFLTGSLDKSAKLWDARTLE--LIKTYVT---ER---PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK 271 (313)
Q Consensus 200 s~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~---~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (313)
+|.+-.|+|+|.|.++.+|...+.. =+..... .+ .-...-|+|+++.++.-|-.++ ...|. ..+..
T Consensus 276 ~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg--~hlWk----t~d~~ 349 (764)
T KOG1063|consen 276 HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGG--FHLWK----TKDKT 349 (764)
T ss_pred ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCc--EEEEe----ccCcc
Confidence 9999999999999999999876542 1122111 11 1345668998876655432222 22222 11223
Q ss_pred eeehhhhhhhccccccccceeEEEECCCCCe
Q 021399 272 FFDKILQEEIGGVKGHFGPINALAFNPDGKR 302 (313)
Q Consensus 272 ~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~ 302 (313)
+|.. ....+||...|.+|+|+|.|+.
T Consensus 350 ~w~~-----~~~iSGH~~~V~dv~W~psGef 375 (764)
T KOG1063|consen 350 FWTQ-----EPVISGHVDGVKDVDWDPSGEF 375 (764)
T ss_pred ceee-----ccccccccccceeeeecCCCCE
Confidence 3442 2356899999999999999994
No 143
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1e-19 Score=154.69 Aligned_cols=243 Identities=19% Similarity=0.300 Sum_probs=173.4
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC--------CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcE
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN--------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTA 76 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~--------~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v 76 (313)
+|+.|.+.|+.+.|+|....|++++.|+.+++|++.. -+++.+|++|.++|.|+++.++++.++|||.||+|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 6788999999999999999999999999999999832 25689999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
+.|++....- |++. +++ ....-.+.||...+..+.+++
T Consensus 369 ~~w~~p~n~d----------------p~ds----------------------~dp----~vl~~~l~Ghtdavw~l~~s~ 406 (577)
T KOG0642|consen 369 RCWNLPPNQD----------------PDDS----------------------YDP----SVLSGTLLGHTDAVWLLALSS 406 (577)
T ss_pred eeeccCCCCC----------------cccc----------------------cCc----chhccceeccccceeeeeecc
Confidence 9998762110 0000 000 011224568888999999999
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCC-CEEEEeeCCCcEEEEECCCCcEEEEEec----
Q 021399 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYVT---- 231 (313)
Q Consensus 157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~---- 231 (313)
...++++++.||++|+|+.....+ +.+... ...+...++++-... .+.++...-+..-+.+.++...+..+..
T Consensus 407 ~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~-~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~ 484 (577)
T KOG0642|consen 407 TKDRLLSCSSDGTVRLWEPTEESP-CTFGEP-KEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASP 484 (577)
T ss_pred cccceeeecCCceEEeeccCCcCc-cccCCc-cccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCC
Confidence 989999999999999999876555 333221 123344555554322 2222222233333445554444333321
Q ss_pred ----CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 232 ----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 232 ----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
...++.+.++|..+..+.+ ..+ ..++++|..+++.++...+|...|+++++.|+|-+|..
T Consensus 485 ~~~~~~~in~vVs~~~~~~~~~~-hed-------------~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s 548 (577)
T KOG0642|consen 485 GPRRYPQINKVVSHPTADITFTA-HED-------------RSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMS 548 (577)
T ss_pred cccccCccceEEecCCCCeeEec-ccC-------------CceecccccccccchheeeccceecceeecCCCceEEe
Confidence 1347788888888655543 222 24788999999999999999999999999999887654
No 144
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=5.9e-19 Score=140.60 Aligned_cols=198 Identities=17% Similarity=0.243 Sum_probs=151.6
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~ 87 (313)
-|.-.+..+....++++|+|++.|.+|.+|+++ |+.+.++......-...++||+|+++++++-...|++|.+--.+
T Consensus 185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~k-- 261 (420)
T KOG2096|consen 185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTK-- 261 (420)
T ss_pred hcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEecc--
Confidence 466677777778889999999999999999998 88888887766677778999999999999999999999742100
Q ss_pred EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (313)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d 167 (313)
++ .+ .+-..+..++||++.+..++|++++++++|.+.|
T Consensus 262 ----------------dG---------~f-----------------qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkD 299 (420)
T KOG2096|consen 262 ----------------DG---------TF-----------------QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKD 299 (420)
T ss_pred ----------------Cc---------ch-----------------hhhhhhheeccchhheeeeeeCCCcceeEEEecC
Confidence 00 00 0123466789999999999999999999999999
Q ss_pred CeEEEEECCC-------Cceeeec-ccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe--cCCceeE
Q 021399 168 AIVRIWDTET-------GKLLKES-DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNA 237 (313)
Q Consensus 168 ~~i~lwd~~~-------~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~ 237 (313)
|+++|||+.- .+.+++. .....-......++.+|+|+.||.+ ....++++..++++...++. +...|.+
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~ 378 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISS 378 (420)
T ss_pred CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceee
Confidence 9999999642 1223322 1111123445588999999976654 45679999999988776664 5678999
Q ss_pred EEeccCCCEEEEcc
Q 021399 238 VTMSPLLDHVVLGG 251 (313)
Q Consensus 238 ~~~~p~~~~~~~~~ 251 (313)
++|+|+|..++++|
T Consensus 379 is~~~~g~~~atcG 392 (420)
T KOG2096|consen 379 ISYSSDGKYIATCG 392 (420)
T ss_pred EEecCCCcEEeeec
Confidence 99999999887765
No 145
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.3e-19 Score=137.94 Aligned_cols=207 Identities=19% Similarity=0.319 Sum_probs=146.8
Q ss_pred ccccccccceeEEEEcc--CCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEE
Q 021399 4 ILMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAK 77 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~--~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~ 77 (313)
.+|+||.++|+-++|.. -|..|+|++.||.|.||.-++++ ..+....|+.+|++++|.|. |-.|+.+++||+|.
T Consensus 50 ~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vs 129 (299)
T KOG1332|consen 50 AELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVS 129 (299)
T ss_pred eEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEE
Confidence 47999999999999975 79999999999999999988884 35567789999999999886 45889999999999
Q ss_pred EEECCCC-e-EEEE--ecCCCCeeEEEeecCC---------------eEEEEECCCceeccccceeeeeeeCCCCCCCce
Q 021399 78 LWNVETG-A-QLFT--FNFDSPARSVDFAVGD---------------KLAVITTDPFMELNSAIHVKRIARDPADQGGES 138 (313)
Q Consensus 78 vWd~~~~-~-~~~~--~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (313)
|.+.++. . .... ..+...+.++.+.|.. +++.+..+ ....+|....+ +=..
T Consensus 130 vl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcD------n~VkiW~~~~~----~w~~ 199 (299)
T KOG1332|consen 130 VLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCD------NLVKIWKFDSD----SWKL 199 (299)
T ss_pred EEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCc------cceeeeecCCc----chhh
Confidence 9998664 1 1111 1234456667766641 11211222 12222222111 0011
Q ss_pred EEEecCCCCceEEEEEccCC----CEEEEeeCCCeEEEEECCCC-ceeeecccccCceeceEEEEECCCCCEEEEeeCCC
Q 021399 139 VLILKGPQGRINRAVWGPLN----RTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213 (313)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~~----~~i~t~~~d~~i~lwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg 213 (313)
-..+++|..-+..++|.|.- ..|++|+.||++-||-...- ...+ ..........+..+.||..|+.|+.++.|+
T Consensus 200 e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk-~tll~~f~~~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 200 ERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWK-KTLLEEFPDVVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred hhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCccc-ccccccCCcceEEEEEeccccEEEEecCCc
Confidence 22378899999999999874 47999999999999976421 1111 111122456799999999999999999999
Q ss_pred cEEEEECC
Q 021399 214 SAKLWDAR 221 (313)
Q Consensus 214 ~i~iwd~~ 221 (313)
.+++|.-.
T Consensus 279 kvtlwke~ 286 (299)
T KOG1332|consen 279 KVTLWKEN 286 (299)
T ss_pred EEEEEEeC
Confidence 99999644
No 146
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=1.8e-19 Score=153.25 Aligned_cols=212 Identities=28% Similarity=0.384 Sum_probs=150.0
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC------C----cEEEEecCCCCceEEEEECCCCCeEEEeeCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------G----ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ 74 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~------~----~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~ 74 (313)
++++|+++|.|++++++++++++|+-||+|+.|++.. . .....+.||.+.||.+++|+....|+++|.||
T Consensus 339 tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~Dg 418 (577)
T KOG0642|consen 339 TFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDG 418 (577)
T ss_pred EEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCc
Confidence 8999999999999999999999999999999995431 1 24567889999999999999988999999999
Q ss_pred cEEEEECCCCeEEEEecCC---CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec-------C
Q 021399 75 TAKLWNVETGAQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-------G 144 (313)
Q Consensus 75 ~v~vWd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 144 (313)
|++.|++..... +++... .-..++++..- .+...+...........+... ....+.+. .
T Consensus 419 Tvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss--------~~a~~~~s~~~~~~~~~~~ev--~s~~~~~~s~~~~~~~ 487 (577)
T KOG0642|consen 419 TVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSS--------RPAHSLASFRFGYTSIDDMEV--VSDLLIFESSASPGPR 487 (577)
T ss_pred eEEeeccCCcCc-cccCCccccCCcceEeeccc--------hhHhhhhhcccccccchhhhh--hhheeeccccCCCccc
Confidence 999999877655 222211 11122222211 100000000000000000000 00111111 1
Q ss_pred CCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Q 021399 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (313)
Q Consensus 145 ~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~ 224 (313)
....++.++++|.....+++.+|+.|+++|..+++++... ..|...++++++.|+|-+|++++.|+.+++|.+....
T Consensus 488 ~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~---~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 488 RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSM---VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred ccCccceEEecCCCCeeEecccCCceecccccccccchhe---eeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence 1245788899999999999999999999999998876433 3588999999999999999999999999999998777
Q ss_pred EEEEEe
Q 021399 225 LIKTYV 230 (313)
Q Consensus 225 ~~~~~~ 230 (313)
|+....
T Consensus 565 ~~~es~ 570 (577)
T KOG0642|consen 565 CVLEST 570 (577)
T ss_pred eeeccc
Confidence 766543
No 147
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.82 E-value=1.4e-19 Score=152.03 Aligned_cols=185 Identities=24% Similarity=0.339 Sum_probs=156.3
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~ 91 (313)
..+.|+.+||.+..+++..||.|.|||+.+...++.|+||.+.+.||.+++||..|-|||-|.+||-||++++.......
T Consensus 511 aCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd 590 (705)
T KOG0639|consen 511 ACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD 590 (705)
T ss_pred hhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999876443221
Q ss_pred CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEE
Q 021399 92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 171 (313)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~ 171 (313)
+ .+.|.++-.+|.+..++.|=+.+.+.
T Consensus 591 F-----------------------------------------------------~SQIfSLg~cP~~dWlavGMens~ve 617 (705)
T KOG0639|consen 591 F-----------------------------------------------------SSQIFSLGYCPTGDWLAVGMENSNVE 617 (705)
T ss_pred h-----------------------------------------------------hhhheecccCCCccceeeecccCcEE
Confidence 1 13455666788889999999999888
Q ss_pred EEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcc
Q 021399 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 172 lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 251 (313)
|-........+ ..-|...|.++.|++.|++++|.+.|+.+..|..--|..+.+.....++.++..+.+..+++++.
T Consensus 618 vlh~skp~kyq----lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGS 693 (705)
T KOG0639|consen 618 VLHTSKPEKYQ----LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGS 693 (705)
T ss_pred EEecCCcccee----ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecC
Confidence 87765433322 12488999999999999999999999999999988888888777777899999998888888776
Q ss_pred cc
Q 021399 252 GQ 253 (313)
Q Consensus 252 ~~ 253 (313)
|+
T Consensus 694 Gd 695 (705)
T KOG0639|consen 694 GD 695 (705)
T ss_pred CC
Confidence 64
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=4.5e-18 Score=145.76 Aligned_cols=288 Identities=19% Similarity=0.262 Sum_probs=176.6
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVET 83 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~ 83 (313)
+.+||++.|.|++.+|.|.+|++|+.||+||||.+.++++++++.- .+.|.|++|+|.+. .++.++.+..+.|-+..-
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 6789999999999999999999999999999999999999988764 56899999999875 233334444465555433
Q ss_pred CeEEEE------ec-C----CCCeeEEEeecC-----C-eEE-EEECCCce-eccccceeeeeeeCCCCCCCceEEE---
Q 021399 84 GAQLFT------FN-F----DSPARSVDFAVG-----D-KLA-VITTDPFM-ELNSAIHVKRIARDPADQGGESVLI--- 141 (313)
Q Consensus 84 ~~~~~~------~~-~----~~~~~~~~~~~~-----~-~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--- 141 (313)
|..+.. +. . ......+.|... . .++ .+...+.+ .+.-...-..++....+.....+++
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 321110 00 0 011122233321 0 011 11111100 0000000001111111111112221
Q ss_pred --------ecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC
Q 021399 142 --------LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213 (313)
Q Consensus 142 --------~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg 213 (313)
+.-..+.+..+.|+|...++++++. ..|+|||+....+++++. .....|..++.+|.|..|+.|+.|+
T Consensus 554 SK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~---tg~kwiS~msihp~GDnli~gs~d~ 629 (733)
T KOG0650|consen 554 SKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLL---TGSKWISSMSIHPNGDNLILGSYDK 629 (733)
T ss_pred ccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHh---cCCeeeeeeeecCCCCeEEEecCCC
Confidence 1122356788999999999998885 579999998766665543 2456899999999999999999999
Q ss_pred cEEEEECCCC-cEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccc-
Q 021399 214 SAKLWDARTL-ELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP- 290 (313)
Q Consensus 214 ~i~iwd~~~~-~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~- 290 (313)
.+..+|+.-. ++.+++. +...++.|+||+...-++ ++++|+.++..+..-...+ .....--+++.+.||...
T Consensus 630 k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfa-s~sdDgtv~Vfhg~VY~Dl----~qnpliVPlK~L~gH~~~~ 704 (733)
T KOG0650|consen 630 KMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFA-SGSDDGTVIVFHGMVYNDL----LQNPLIVPLKRLRGHEKTN 704 (733)
T ss_pred eeEEEEcccCcchhHHhhhhhhhhhhhhhccccceee-eecCCCcEEEEeeeeehhh----hcCCceEeeeeccCceeec
Confidence 9999998754 4555554 566789999999877443 3344444443322111111 001122345678899877
Q ss_pred ---eeEEEECCCCCe
Q 021399 291 ---INALAFNPDGKR 302 (313)
Q Consensus 291 ---V~~~~fspdgk~ 302 (313)
|.+..|+|..-.
T Consensus 705 ~~gVLd~~wHP~qpW 719 (733)
T KOG0650|consen 705 DLGVLDTIWHPRQPW 719 (733)
T ss_pred ccceEeecccCCCce
Confidence 999999997544
No 149
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=4.6e-17 Score=141.39 Aligned_cols=233 Identities=17% Similarity=0.286 Sum_probs=169.3
Q ss_pred cccccccc-ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 4 ILMKGHER-PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 4 ~~l~~h~~-~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
.++.||++ .|..++|+ ++..|+|.+.+|.|.-||+.++++++.++.-.+.||+++.+|.+..++.|+.||.+...+..
T Consensus 62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~ 140 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIG 140 (691)
T ss_pred EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecC
Confidence 45666666 58999999 57799999999999999999999999999999999999999999999999999988888888
Q ss_pred CCeEEEEecC---CCCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEE----EecCCC---Cc-eE
Q 021399 83 TGAQLFTFNF---DSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVL----ILKGPQ---GR-IN 150 (313)
Q Consensus 83 ~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~-i~ 150 (313)
.++......+ ...+.+++|.+.+. ++.++.+..+ +.|+... +..+. .+.+-. .. +.
T Consensus 141 p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I------riwd~~~------~~t~~~~~~~~d~l~k~~~~iVW 208 (691)
T KOG2048|consen 141 PDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVI------RIWDVKS------GQTLHIITMQLDRLSKREPTIVW 208 (691)
T ss_pred CceEEEEeecccccceEEEEEecCCccEEEecccCceE------EEEEcCC------CceEEEeeecccccccCCceEEE
Confidence 7776655433 35677888888776 4444444323 2232211 11111 011111 11 23
Q ss_pred EEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE--EEE
Q 021399 151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKT 228 (313)
Q Consensus 151 ~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~ 228 (313)
++.+- ....|++|...|+|..||...+.+++.. ..|...|.+++..++++++++++.|++|.-+...+... +..
T Consensus 209 Sv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~---~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~ 284 (691)
T KOG2048|consen 209 SVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSH---SCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN 284 (691)
T ss_pred EEEEe-ecCcEEEecCCceEEEEcccCcchhhhh---hhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeee
Confidence 33333 3456999999999999999999877544 46899999999999999999999999999998877643 111
Q ss_pred ---EecCCceeEEEeccCCCEEEEcccccCc
Q 021399 229 ---YVTERPVNAVTMSPLLDHVVLGGGQDAS 256 (313)
Q Consensus 229 ---~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 256 (313)
..+...+.+++.-+. .+++||.|..
T Consensus 285 ~~r~~h~hdvrs~av~~~---~l~sgG~d~~ 312 (691)
T KOG2048|consen 285 SRRDLHAHDVRSMAVIEN---ALISGGRDFT 312 (691)
T ss_pred ccccCCcccceeeeeecc---eEEecceeeE
Confidence 124567888887764 5566665543
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=3.3e-18 Score=141.69 Aligned_cols=193 Identities=20% Similarity=0.324 Sum_probs=143.5
Q ss_pred cccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCC
Q 021399 7 KGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~ 84 (313)
.+|++.|..|+|... ...|||||.|.+|++||++++++..++..|.+.|.+++|+|. .+.|++||.|++|.+.|.+..
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 379999999999876 469999999999999999999999999999999999999985 579999999999999998752
Q ss_pred eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC-CEEEE
Q 021399 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIIS 163 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~i~t 163 (313)
... ...|.. .+.|-.+.|.|.. ..+++
T Consensus 320 ~~s----------~~~wk~------------------------------------------~g~VEkv~w~~~se~~f~~ 347 (463)
T KOG0270|consen 320 SNS----------GKEWKF------------------------------------------DGEVEKVAWDPHSENSFFV 347 (463)
T ss_pred ccc----------CceEEe------------------------------------------ccceEEEEecCCCceeEEE
Confidence 110 000100 1233445555543 45778
Q ss_pred eeCCCeEEEEECCCC-ceeeecccccCceeceEEEEECCC-CCEEEEeeCCCcEEEEECCCCcEEEEEec---CCceeEE
Q 021399 164 AGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYVT---ERPVNAV 238 (313)
Q Consensus 164 ~~~d~~i~lwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~ 238 (313)
+..||+++=+|+++. +++-+. ..|.+.|.++++++. ..++++++.|+.+++|++..-.+-....+ -....|.
T Consensus 348 ~tddG~v~~~D~R~~~~~vwt~---~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 348 STDDGTVYYFDIRNPGKPVWTL---KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCF 424 (463)
T ss_pred ecCCceEEeeecCCCCCceeEE---EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeec
Confidence 889999999999775 454443 369999999998765 44688999999999999875443221111 1126677
Q ss_pred EeccCCCEEEEccccc
Q 021399 239 TMSPLLDHVVLGGGQD 254 (313)
Q Consensus 239 ~~~p~~~~~~~~~~~~ 254 (313)
++.|.-...++.||..
T Consensus 425 ~~~~~~a~~la~GG~k 440 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEK 440 (463)
T ss_pred ccCCCcceEEEecCcc
Confidence 7888877777766654
No 151
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.80 E-value=1.1e-19 Score=160.89 Aligned_cols=230 Identities=23% Similarity=0.431 Sum_probs=159.4
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
-|.||...|+|+.|+..|.++++|+.|..++||..+++.++..++||++.|+.++.+.++..++++|.|..|++|.+.++
T Consensus 185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~ 264 (1113)
T KOG0644|consen 185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG 264 (1113)
T ss_pred HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence 57899999999999999999999999999999999999999999999999999999998889999999999999998765
Q ss_pred eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
.+ +.++.+|.+.|+.++|+| +.+.
T Consensus 265 ~p----------------------------------------------------vsvLrghtgavtaiafsP----~~ss 288 (1113)
T KOG0644|consen 265 AP----------------------------------------------------VSVLRGHTGAVTAIAFSP----RASS 288 (1113)
T ss_pred ch----------------------------------------------------HHHHhccccceeeeccCc----cccC
Confidence 43 334568899999999999 3478
Q ss_pred eCCCeEEEEECCCCceeeec-cc-ccCceeceEEEEECCCCCEEEEeeC-------------------------------
Q 021399 165 GEDAIVRIWDTETGKLLKES-DK-ETGHKKTITSLAKAADGSHFLTGSL------------------------------- 211 (313)
Q Consensus 165 ~~d~~i~lwd~~~~~~~~~~-~~-~~~h~~~v~~~~~s~~~~~l~s~s~------------------------------- 211 (313)
+.||++++||.+-- .+... .. .......+.++.+-.++..++|++.
T Consensus 289 s~dgt~~~wd~r~~-~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~ 367 (1113)
T KOG0644|consen 289 SDDGTCRIWDARLE-PRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSI 367 (1113)
T ss_pred CCCCceEecccccc-ccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEecccccccc
Confidence 89999999997611 10000 00 0001122222223233333333333
Q ss_pred ------CCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhc-c
Q 021399 212 ------DKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIG-G 283 (313)
Q Consensus 212 ------dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 283 (313)
+-.+.+|++-++....... +...+..+.+||....+..++|.|+.. .+||.-.+.+++ .
T Consensus 368 ~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst-------------~iwdi~eg~pik~y 434 (1113)
T KOG0644|consen 368 VVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST-------------IIWDIWEGIPIKHY 434 (1113)
T ss_pred ceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCce-------------EeeecccCCcceee
Confidence 3334556666655444432 234567778888887777777766542 234433333322 2
Q ss_pred ccccccceeEEEECCCCCeeEE
Q 021399 284 VKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 284 ~~~h~~~V~~~~fspdgk~~~~ 305 (313)
+.+| +.+.+-+||+||.-+++
T Consensus 435 ~~gh-~kl~d~kFSqdgts~~l 455 (1113)
T KOG0644|consen 435 FIGH-GKLVDGKFSQDGTSIAL 455 (1113)
T ss_pred eccc-ceeeccccCCCCceEec
Confidence 3454 45667799999988765
No 152
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.78 E-value=5.3e-18 Score=135.67 Aligned_cols=217 Identities=18% Similarity=0.319 Sum_probs=138.0
Q ss_pred cccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcEEEEe---cCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399 5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTY---RGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~---~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd 80 (313)
-+++|..+|+.+.|.|+. ++++++|+|..||+|++.+..++..| +||++.|.++.|+++|..++|+|.|.++++|+
T Consensus 130 ~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~ 209 (385)
T KOG1034|consen 130 NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWR 209 (385)
T ss_pred ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEe
Confidence 478999999999999986 69999999999999999999998877 57999999999999999999999999999999
Q ss_pred CCCCeEE----EEecCC-----CCe--eEEE---eec--------------CCeEEEEECCCceeccccceeeeeeeC--
Q 021399 81 VETGAQL----FTFNFD-----SPA--RSVD---FAV--------------GDKLAVITTDPFMELNSAIHVKRIARD-- 130 (313)
Q Consensus 81 ~~~~~~~----~~~~~~-----~~~--~~~~---~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 130 (313)
+...+.. ....+. .|. .... |+. ++.++.-+.++.+..+...++.+-...
T Consensus 210 l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vk 289 (385)
T KOG1034|consen 210 LNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVK 289 (385)
T ss_pred cChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccC
Confidence 9843311 111000 000 0000 000 111111111111111111011000000
Q ss_pred CCCCCCceEEEecCCCCceEEE--EEccCCCEEEEeeCCCeEEEEECCCCceeeec-ccccCceeceEEEEECCCCCEEE
Q 021399 131 PADQGGESVLILKGPQGRINRA--VWGPLNRTIISAGEDAIVRIWDTETGKLLKES-DKETGHKKTITSLAKAADGSHFL 207 (313)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~ 207 (313)
+..........++-+...|.-+ .+.|-++.+|.|...|.|.+||++...+.... ....--...|+..+|+.||..|+
T Consensus 290 p~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv 369 (385)
T KOG1034|consen 290 PPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILV 369 (385)
T ss_pred CCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEE
Confidence 0000111122333334444433 45577788999999999999999876542111 11112346788999999999999
Q ss_pred EeeCCCcEEEEECC
Q 021399 208 TGSLDKSAKLWDAR 221 (313)
Q Consensus 208 s~s~dg~i~iwd~~ 221 (313)
....|++|-=||..
T Consensus 370 ~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 370 LVCDDGTVWRWDRV 383 (385)
T ss_pred EEeCCCcEEEEEee
Confidence 99999999888853
No 153
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.6e-17 Score=138.31 Aligned_cols=232 Identities=15% Similarity=0.234 Sum_probs=167.0
Q ss_pred cceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcE--EEEecCCC-CceEEEEECCCCCeEEEeeCCCcEEEEECCCCeE
Q 021399 11 RPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGER--LGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (313)
Q Consensus 11 ~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~--~~~~~~H~-~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~ 86 (313)
-+|.+++|.|+|+ .+++++.-.....||+.+.+. ++...+++ ..+....+++++++++.+|..|.|.+--..+++.
T Consensus 258 fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~el 337 (514)
T KOG2055|consen 258 FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKEL 337 (514)
T ss_pred CccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhh
Confidence 3688999999999 999999999999999998864 44556665 3456778899999999999999999887776655
Q ss_pred EEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC
Q 021399 87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (313)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~ 166 (313)
+..+.. .+.+..+.|+.+++.|+.++.
T Consensus 338 i~s~Ki-----------------------------------------------------eG~v~~~~fsSdsk~l~~~~~ 364 (514)
T KOG2055|consen 338 ITSFKI-----------------------------------------------------EGVVSDFTFSSDSKELLASGG 364 (514)
T ss_pred hheeee-----------------------------------------------------ccEEeeEEEecCCcEEEEEcC
Confidence 432211 245667778888888999999
Q ss_pred CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC------CcEEEEEe-cCCceeEEE
Q 021399 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART------LELIKTYV-TERPVNAVT 239 (313)
Q Consensus 167 d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~------~~~~~~~~-~~~~~~~~~ 239 (313)
+|.|.+||+++..++.++... -.-.-++++.++++.++|+||..|-|.|||.++ .+++..+. ....|..+.
T Consensus 365 ~GeV~v~nl~~~~~~~rf~D~--G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~ 442 (514)
T KOG2055|consen 365 TGEVYVWNLRQNSCLHRFVDD--GSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ 442 (514)
T ss_pred CceEEEEecCCcceEEEEeec--CccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeee
Confidence 999999999998877765321 122346788899999999999999999999654 23444432 234688999
Q ss_pred eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
|+|+.+.+++++..-...+.+.....-. --+.|... ++ --+.|+|++|||.|-+||+=
T Consensus 443 Fn~d~qiLAiaS~~~knalrLVHvPS~T-VFsNfP~~-n~-------~vg~vtc~aFSP~sG~lAvG 500 (514)
T KOG2055|consen 443 FNHDAQILAIASRVKKNALRLVHVPSCT-VFSNFPTS-NT-------KVGHVTCMAFSPNSGYLAVG 500 (514)
T ss_pred eCcchhhhhhhhhccccceEEEecccee-eeccCCCC-CC-------cccceEEEEecCCCceEEee
Confidence 9999998888765433333322211100 01223322 11 13578999999999888763
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.4e-18 Score=158.78 Aligned_cols=227 Identities=19% Similarity=0.276 Sum_probs=169.5
Q ss_pred ccceeEEEEccCCCE----EEEeeCCCCeEEEeCCCC------cEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEE
Q 021399 10 ERPLTYLKYNKDGDL----LFSCAKDHTPTVWFADNG------ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKL 78 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~----l~s~s~d~~i~iw~~~~~------~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~v 78 (313)
....+.|+|.+.|.. |+.|..||.|.+||...- ..+.+++-|++.|..+.|++.. ++++||+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 345678999998876 899999999999987652 3467788999999999999875 49999999999999
Q ss_pred EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC-
Q 021399 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL- 157 (313)
Q Consensus 79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 157 (313)
||+...+.-... + -....+.|.++.|+..
T Consensus 144 WDlnn~~tP~~~-------------~-------------------------------------~~~~~~eI~~lsWNrkv 173 (1049)
T KOG0307|consen 144 WDLNKPETPFTP-------------G-------------------------------------SQAPPSEIKCLSWNRKV 173 (1049)
T ss_pred eccCCcCCCCCC-------------C-------------------------------------CCCCcccceEeccchhh
Confidence 998753211000 0 0012345667777654
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCE-EEEeeCCC---cEEEEECCC-CcEEEEEe-c
Q 021399 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDK---SAKLWDART-LELIKTYV-T 231 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~dg---~i~iwd~~~-~~~~~~~~-~ 231 (313)
...|++++.+|+.-|||++..+.+-.+.... .+..+..++|+|+... |++++.|. .|.+||+|. ..+++++. |
T Consensus 174 qhILAS~s~sg~~~iWDlr~~~pii~ls~~~-~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H 252 (1049)
T KOG0307|consen 174 SHILASGSPSGRAVIWDLRKKKPIIKLSDTP-GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGH 252 (1049)
T ss_pred hHHhhccCCCCCceeccccCCCcccccccCC-CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhccc
Confidence 3457889999999999999877665554322 2345778999998664 66666543 589999885 45666663 5
Q ss_pred CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCC
Q 021399 232 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300 (313)
Q Consensus 232 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg 300 (313)
...+.+++|++.+..+++++|.|.. +..|+.++++.+.++..-..++..+.|.|-.
T Consensus 253 ~~GilslsWc~~D~~lllSsgkD~~-------------ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~ 308 (1049)
T KOG0307|consen 253 QRGILSLSWCPQDPRLLLSSGKDNR-------------IICWNPNTGEVLGELPAQGNWCFDVQWCPRN 308 (1049)
T ss_pred ccceeeeccCCCCchhhhcccCCCC-------------eeEecCCCceEeeecCCCCcceeeeeecCCC
Confidence 6679999999999888888776653 3467888888888888888899999999873
No 155
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.2e-17 Score=137.65 Aligned_cols=200 Identities=22% Similarity=0.168 Sum_probs=144.0
Q ss_pred eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecC-
Q 021399 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF- 92 (313)
Q Consensus 14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~- 92 (313)
.+++|+++|..|++++.||.+|||+...-..+..+..|.++|.++.|+|||+++++-+.| ..+||+..++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 579999999999999999999999988888888889999999999999999999999999 999999999865543331
Q ss_pred --CCCeeEEEeecCC---eEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC
Q 021399 93 --DSPARSVDFAVGD---KLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (313)
Q Consensus 93 --~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~ 166 (313)
+.-...+.|..++ .+.+.. ..+. ..+...++............ ........|.++..+++|++++.|+.
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~----~~v~~~~~~~w~~~~~l~~~-~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPG----GGVRLCDISLWSGSNFLRLR-KKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCC----CceeEEEeeeeccccccchh-hhhhccCcceeEEEcCCCcEEEEecc
Confidence 1122334454433 222221 1111 11111222111111000000 00112346889999999999999999
Q ss_pred CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (313)
Q Consensus 167 d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~ 221 (313)
||.|.+++..+-+++.-+. ..|...|+.+.|+||..++++.+.|.++.+..+.
T Consensus 302 dGsVai~~~~~lq~~~~vk--~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK--EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred CCcEEEEEeceeeeeEeeh--hhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 9999999998776665443 4699999999999999999999999988887654
No 156
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.77 E-value=1.6e-17 Score=131.21 Aligned_cols=220 Identities=20% Similarity=0.284 Sum_probs=155.0
Q ss_pred EecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceee
Q 021399 47 TYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125 (313)
Q Consensus 47 ~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (313)
..+-|.+.|+++.+.+ .|++++||+.||.|-+||++....-. .....+ ...+.
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e-----~s~li~-----k~~c~---------------- 91 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYE-----ASGLIA-----KHKCI---------------- 91 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchh-----hcccee-----heeee----------------
Confidence 3456999999999986 58899999999999999987542100 000000 00000
Q ss_pred eeeeCCCCCCCceEEEecCCCCceEEEEEccCC-CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC--
Q 021399 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-- 202 (313)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-- 202 (313)
+... .-.+|.-.|.++.|-|-. ..|.+++-|.++++||.++-+..-.+. -.+.|.+-++||=
T Consensus 92 -v~~~----------h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~----me~~VYshamSp~a~ 156 (397)
T KOG4283|consen 92 -VAKQ----------HENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK----MEGKVYSHAMSPMAM 156 (397)
T ss_pred -cccc----------CCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee----cCceeehhhcChhhh
Confidence 0000 113466678888888754 567788999999999998766544332 3456777777763
Q ss_pred -CCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh
Q 021399 203 -GSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE 280 (313)
Q Consensus 203 -~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (313)
...||+|..|-+|++-|+++|.+-.++.. ...+-++.|+|..+.++++|+-|+ .+..||.|....-.+..|....+.
T Consensus 157 sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg-~irlWDiRrasgcf~~lD~hn~k~ 235 (397)
T KOG4283|consen 157 SHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADG-AIRLWDIRRASGCFRVLDQHNTKR 235 (397)
T ss_pred cceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCc-eEEEEEeecccceeEEeecccCcc
Confidence 44688888999999999999999988864 456999999999999998877664 577888776543344455422121
Q ss_pred ---hccccccccceeEEEECCCCCeeEEEEE
Q 021399 281 ---IGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 281 ---~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
++.-.+|.+.|+.++|+.||++++.+-.
T Consensus 236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~gt 266 (397)
T KOG4283|consen 236 PPILKTNTAHYGKVNGLAWTSDARYLASCGT 266 (397)
T ss_pred CccccccccccceeeeeeecccchhhhhccC
Confidence 2334589999999999999999887654
No 157
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.77 E-value=8.9e-18 Score=134.38 Aligned_cols=236 Identities=17% Similarity=0.259 Sum_probs=164.2
Q ss_pred ccccceeEEEEccC----CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECC
Q 021399 8 GHERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE 82 (313)
Q Consensus 8 ~h~~~v~~~~fs~~----g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~ 82 (313)
.|....+.++|+-| .++||.|+.-|.|||.|+.+++..+.+.+|.++|+.+.++|+. +++++||.|.+||+|+++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~ 166 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ 166 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence 36777788888754 4689999999999999999999999999999999999999975 799999999999999999
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
+..++..+. -.++|...|.++.|++++.+|+
T Consensus 167 ~~~Cv~VfG-------------------------------------------------G~egHrdeVLSvD~~~~gd~i~ 197 (385)
T KOG1034|consen 167 TDVCVAVFG-------------------------------------------------GVEGHRDEVLSVDFSLDGDRIA 197 (385)
T ss_pred CCeEEEEec-------------------------------------------------ccccccCcEEEEEEcCCCCeee
Confidence 987765431 1257888999999999999999
Q ss_pred EeeCCCeEEEEECCCCceeee-------------------------cccccCceeceEEEEECCCCCEEEEeeCCCcEEE
Q 021399 163 SAGEDAIVRIWDTETGKLLKE-------------------------SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~~~~-------------------------~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~i 217 (313)
++|-|..|++|++...+.... +....-|+..|-|+.|- |++++|=|-++.|..
T Consensus 198 ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~ 275 (385)
T KOG1034|consen 198 SCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVC 275 (385)
T ss_pred ccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEE
Confidence 999999999999874321100 00123466677777775 688999999999999
Q ss_pred EEC-CCCcEEE---------EEe----cCC-ceeE--EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh
Q 021399 218 WDA-RTLELIK---------TYV----TER-PVNA--VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE 280 (313)
Q Consensus 218 wd~-~~~~~~~---------~~~----~~~-~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (313)
|.. +-.+.+. ++. .+. .+-. -+|.|-++.++++. ..+-+++||.+... ....
T Consensus 276 w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gn--q~g~v~vwdL~~~e-------p~~~-- 344 (385)
T KOG1034|consen 276 WKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGN--QSGKVYVWDLDNNE-------PPKC-- 344 (385)
T ss_pred EecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhcc--CCCcEEEEECCCCC-------CccC--
Confidence 987 2222211 111 111 1212 34456566555432 33334545433211 1111
Q ss_pred hccccc--cccceeEEEECCCCCeeEEE
Q 021399 281 IGGVKG--HFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 281 ~~~~~~--h~~~V~~~~fspdgk~~~~~ 306 (313)
..+.. -..+|...+||.||..+.++
T Consensus 345 -ttl~~s~~~~tVRQ~sfS~dgs~lv~v 371 (385)
T KOG1034|consen 345 -TTLTHSKSGSTVRQTSFSRDGSILVLV 371 (385)
T ss_pred -ceEEeccccceeeeeeecccCcEEEEE
Confidence 11111 14689999999999986554
No 158
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=2.9e-17 Score=134.38 Aligned_cols=155 Identities=26% Similarity=0.356 Sum_probs=124.0
Q ss_pred EecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceee
Q 021399 47 TYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125 (313)
Q Consensus 47 ~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (313)
.+.||+++|..++|+|- .+.+||||.|-+|+||++..+.....
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------------------------------ 119 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------------------------------ 119 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------------------------------
Confidence 45799999999999985 46899999999999999876432110
Q ss_pred eeeeCCCCCCCceEEEecCCCCceEEEEEccC-CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC
Q 021399 126 RIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS 204 (313)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 204 (313)
-.+++..+.+|+.++..++|+|. .+.++++|.|.+|.+|++.++..+-++. |...|.++.|+.||+
T Consensus 120 ---------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~----hpd~i~S~sfn~dGs 186 (472)
T KOG0303|consen 120 ---------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD----HPDMVYSMSFNRDGS 186 (472)
T ss_pred ---------cccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC----CCCeEEEEEeccCCc
Confidence 12467788999999999999987 4678999999999999999998776653 999999999999999
Q ss_pred EEEEeeCCCcEEEEECCCCcEEEEEec-CC-ceeEEEeccCCCEEEEcc
Q 021399 205 HFLTGSLDKSAKLWDARTLELIKTYVT-ER-PVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 205 ~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~-~~~~~~~~p~~~~~~~~~ 251 (313)
.|++.+.|.+||+||.++++.+.+-.. ++ ....+.|-.++. ++++|
T Consensus 187 ~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTG 234 (472)
T KOG0303|consen 187 LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTG 234 (472)
T ss_pred eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeec
Confidence 999999999999999999999887632 21 223344545555 44443
No 159
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=2.6e-17 Score=136.49 Aligned_cols=179 Identities=20% Similarity=0.282 Sum_probs=136.4
Q ss_pred CCEEEEeeCCCCeEEEeCCCCc---EEEE------------------ecCCCCceEEEEECCCC-CeEEEeeCCCcEEEE
Q 021399 22 GDLLFSCAKDHTPTVWFADNGE---RLGT------------------YRGHNGAVWCCDVSRDS-MTLITGSADQTAKLW 79 (313)
Q Consensus 22 g~~l~s~s~d~~i~iw~~~~~~---~~~~------------------~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vW 79 (313)
|+++|.|.-|..|-|||++=.. +.-+ -.+|+.+|.+++|+..- +.|+|||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 7899999999999999876211 1111 23799999999998653 589999999999999
Q ss_pred ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC-
Q 021399 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN- 158 (313)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 158 (313)
|+.++++..++. .|..+|.++.|+|..
T Consensus 272 D~~~g~p~~s~~----------------------------------------------------~~~k~Vq~l~wh~~~p 299 (463)
T KOG0270|consen 272 DVDTGKPKSSIT----------------------------------------------------HHGKKVQTLEWHPYEP 299 (463)
T ss_pred EcCCCCcceehh----------------------------------------------------hcCCceeEEEecCCCc
Confidence 999987654332 345567777887654
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCCC-cEEEEEe-cCCce
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTL-ELIKTYV-TERPV 235 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~-~~~~~~~-~~~~~ 235 (313)
..+++|+.|+++.+.|.+........ -...+.|-.++|.+... .++++..||+++-+|+|.. +++.++. +..+|
T Consensus 300 ~~LLsGs~D~~V~l~D~R~~~~s~~~---wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~I 376 (463)
T KOG0270|consen 300 SVLLSGSYDGTVALKDCRDPSNSGKE---WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEI 376 (463)
T ss_pred eEEEeccccceEEeeeccCccccCce---EEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCc
Confidence 57899999999999998852221111 11356788999988654 5777889999999999984 8888886 67789
Q ss_pred eEEEeccCCCEEEEcccccC
Q 021399 236 NAVTMSPLLDHVVLGGGQDA 255 (313)
Q Consensus 236 ~~~~~~p~~~~~~~~~~~~~ 255 (313)
.++++++.-..++++++.+.
T Consensus 377 Sgl~~n~~~p~~l~t~s~d~ 396 (463)
T KOG0270|consen 377 SGLSVNIQTPGLLSTASTDK 396 (463)
T ss_pred ceEEecCCCCcceeeccccc
Confidence 99999999888888766553
No 160
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=1.3e-14 Score=127.54 Aligned_cols=268 Identities=31% Similarity=0.524 Sum_probs=189.2
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-EEEEecCCCC-ceEEEEE-CCCCC-eEEEeeC-CCcEEEE
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNG-AVWCCDV-SRDSM-TLITGSA-DQTAKLW 79 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-~~~~~~~H~~-~V~~~~~-~~~~~-~l~s~s~-D~~v~vW 79 (313)
.+.+|...+.++.|.+.+..++.++.|+.+.+|+...+. ....+.++.. .+..+.+ ++++. .++..+. |+.+++|
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 139 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLW 139 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEE
Confidence 467899999999999999999999999999999998887 7777777544 7777777 77777 5555455 9999999
Q ss_pred ECCC-CeEEEEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399 80 NVET-GAQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (313)
Q Consensus 80 d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (313)
++.. ....... .+...+..+.+.++....+.... .......+++.. ...+..+.+|...+..+.|+|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~~~~~~~~~v~~~~~~~~ 209 (466)
T COG2319 140 DLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS----LDGTIKLWDLRT------GKPLSTLAGHTDPVSSLAFSPD 209 (466)
T ss_pred EecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC----CCCceEEEEcCC------CceEEeeccCCCceEEEEEcCC
Confidence 9987 4444333 34556667888887764433321 122233333221 3456666778899999999999
Q ss_pred CC-EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE-EEEE-ecCCc
Q 021399 158 NR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-IKTY-VTERP 234 (313)
Q Consensus 158 ~~-~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~-~~~~~ 234 (313)
+. .+++++.|+.|++||...+..+.. ...+|.... ...|++++..+++++.|+.+++||++.... +..+ .+...
T Consensus 210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 286 (466)
T COG2319 210 GGLLIASGSSDGTIRLWDLSTGKLLRS--TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSS 286 (466)
T ss_pred cceEEEEecCCCcEEEEECCCCcEEee--ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCcc
Confidence 87 566669999999999886666552 123465554 338999998999999999999999987664 4444 34567
Q ss_pred eeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEEC
Q 021399 235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 297 (313)
Q Consensus 235 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fs 297 (313)
+.++.|+|.+..+++ ++.+ ..+..|+.+......... ...|...|..+.|+
T Consensus 287 v~~~~~~~~~~~~~~-~~~d-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 337 (466)
T COG2319 287 VLSVAFSPDGKLLAS-GSSD-GTVRLWDLETGKLLSSLT----------LKGHEGPVSSLSFS 337 (466)
T ss_pred EEEEEECCCCCEEEE-eeCC-CcEEEEEcCCCceEEEee----------ecccCCceEEEEEC
Confidence 899999998777777 5555 335555544332211111 23677788999984
No 161
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=3.1e-17 Score=127.69 Aligned_cols=278 Identities=20% Similarity=0.224 Sum_probs=179.9
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec-CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
+|++|...|+++.|..++. |++|..-|.|++|++.+.+..-.++ .|...|+.+..-|+ ..+.|-++|.++.+|++..
T Consensus 9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 7899999999999998764 8999999999999999999888888 57788888887776 5688999999999999987
Q ss_pred CeEEEEecCCCCeeEEEeec-----CCeEE----EEECCCceeccccceeeeeeeCCCCCC-CceEEEec----CCCCce
Q 021399 84 GAQLFTFNFDSPARSVDFAV-----GDKLA----VITTDPFMELNSAIHVKRIARDPADQG-GESVLILK----GPQGRI 149 (313)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~i 149 (313)
+..+..-. -...++.|++ +.+.. ......... .+. .+.. ...+.... +-.+.+
T Consensus 87 s~~i~i~S--i~~nslgFCrfSl~~~~k~~eqll~yp~rgsde----~h~-------~D~g~~tqv~i~dd~~~~Klgsv 153 (323)
T KOG0322|consen 87 SAFISIHS--IVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE----THK-------QDGGDTTQVQIADDSERSKLGSV 153 (323)
T ss_pred cceEEEee--eeccccccccceeccCCCcchhheecCCcccch----hhh-------hccCccceeEccCchhccccCce
Confidence 55432221 1122222221 11111 000000000 000 0000 00111111 111223
Q ss_pred EEEEEcc-CC--CEEEEeeCCCeEEEEECCCCceeeec-------ccccCceeceEEEEECCCCCEEEEeeCCCcEEEEE
Q 021399 150 NRAVWGP-LN--RTIISAGEDAIVRIWDTETGKLLKES-------DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (313)
Q Consensus 150 ~~~~~~~-~~--~~i~t~~~d~~i~lwd~~~~~~~~~~-------~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd 219 (313)
.+..+.- .+ -.++.|-++|.+.+||+.++..+..+ .....|.+.|+++.+.+.-+.=++|+.+..+..|+
T Consensus 154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence 3333221 11 24567788999999999886332211 11246899999999988777778999999999998
Q ss_pred CCCC--cE-E-EEEec-CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEE
Q 021399 220 ARTL--EL-I-KTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 294 (313)
Q Consensus 220 ~~~~--~~-~-~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 294 (313)
++.. .+ + .++.. ..-+..+...|++..++++| ||+| +|+|...+..++..++-|++.|+++
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG---------WD~R-----iRVyswrtl~pLAVLkyHsagvn~v 299 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG---------WDHR-----IRVYSWRTLNPLAVLKYHSAGVNAV 299 (323)
T ss_pred eccccCcccccceEEecCCCccceEEccCCcEEeecc---------cCCc-----EEEEEeccCCchhhhhhhhcceeEE
Confidence 7642 22 1 11111 23477888999998877765 5554 5666667788899999999999999
Q ss_pred EECCCCCee--EEEEEEEe
Q 021399 295 AFNPDGKRY--GFLLLQIN 311 (313)
Q Consensus 295 ~fspdgk~~--~~~~~~~~ 311 (313)
||+||...+ |.++.+|-
T Consensus 300 Afspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 300 AFSPDCELMAAASKDARIS 318 (323)
T ss_pred EeCCCCchhhhccCCceEE
Confidence 999996663 44555553
No 162
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.5e-16 Score=129.08 Aligned_cols=287 Identities=15% Similarity=0.169 Sum_probs=184.3
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC------CcEEEEecC-CCCceEEEEECCCCCeEEEeeCCCcEE
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN------GERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAK 77 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~------~~~~~~~~~-H~~~V~~~~~~~~~~~l~s~s~D~~v~ 77 (313)
.+.+|.+-|.++.||.++++|++|+.|..+++|+.+. .+++..... |...|+|++|+..++.+++|+.+++|.
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 5789999999999999999999999999999998763 344544443 558999999999999999999999999
Q ss_pred EEECCCCeEEEEecCCC---CeeEEEeecCC-eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399 78 LWNVETGAQLFTFNFDS---PARSVDFAVGD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (313)
Q Consensus 78 vWd~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (313)
.-|+++.+.+..++... .+..+..+|-+ .+++++.++... .+++.. . ...+.+++. .......+++.
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~------~~D~Rd-~-~~~~~~~~~-AN~~~~F~t~~ 201 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVS------FIDNRD-R-QNPISLVLP-ANSGKNFYTAE 201 (609)
T ss_pred eeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEE------EEeccC-C-CCCCceeee-cCCCccceeee
Confidence 99999999888876543 66667777744 444433333222 122111 0 011223322 22234567888
Q ss_pred EccCCC-EEEEeeCCCeEEEEECCCCce--eee--cccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE-E
Q 021399 154 WGPLNR-TIISAGEDAIVRIWDTETGKL--LKE--SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI-K 227 (313)
Q Consensus 154 ~~~~~~-~i~t~~~d~~i~lwd~~~~~~--~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~-~ 227 (313)
|+|... .|++.+..+-+-+||.+.... ++. ........-.-+.+.|+|+|+.+++--.-..=.+||+.++.|. .
T Consensus 202 F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~ 281 (609)
T KOG4227|consen 202 FHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVL 281 (609)
T ss_pred ecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeE
Confidence 998764 567888889999999865431 111 1111111223477889999999988776666678898886553 3
Q ss_pred EEecCC-------ceeEEEeccCCCEEEEcccccCceeEeeccC----CCceeeeeee-------hhhhhhhcccccccc
Q 021399 228 TYVTER-------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHR----AGKFEAKFFD-------KILQEEIGGVKGHFG 289 (313)
Q Consensus 228 ~~~~~~-------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-------~~~~~~~~~~~~h~~ 289 (313)
++.+.. .+.+++|--+ +-+++ |+|...+++|... .+.|...=-| +-..+.+..++||.+
T Consensus 282 k~D~N~~GY~N~~T~KS~~F~~D--~~v~t-GSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS 358 (609)
T KOG4227|consen 282 KSDHNPNGYCNIKTIKSMTFIDD--YTVAT-GSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS 358 (609)
T ss_pred eccCCCCcceeeeeeeeeeeecc--eeeec-cCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc
Confidence 332211 2445555443 33444 4455556666421 1111100000 011344567899999
Q ss_pred ceeEEEECCCCCee
Q 021399 290 PINALAFNPDGKRY 303 (313)
Q Consensus 290 ~V~~~~fspdgk~~ 303 (313)
.++.+.|+|....+
T Consensus 359 v~NQVRF~~H~~~l 372 (609)
T KOG4227|consen 359 VPNQVRFSQHNNLL 372 (609)
T ss_pred cccceeecCCcceE
Confidence 99999999986554
No 163
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=2.9e-16 Score=124.74 Aligned_cols=229 Identities=16% Similarity=0.247 Sum_probs=151.7
Q ss_pred ccccccceeEEEEcc--CCCEEEEeeCCCCeEEEeCCCC---------cEEEEecCCCCceEEEEECCC--CCeEEEeeC
Q 021399 6 MKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNG---------ERLGTYRGHNGAVWCCDVSRD--SMTLITGSA 72 (313)
Q Consensus 6 l~~h~~~v~~~~fs~--~g~~l~s~s~d~~i~iw~~~~~---------~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~ 72 (313)
.+.|.++|..+.|.+ -|+.+|++|.|++++||.-... ....++..-+..|+.+.|.|. |-.+++++.
T Consensus 55 Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~a 134 (361)
T KOG2445|consen 55 WRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASA 134 (361)
T ss_pred EEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEecc
Confidence 467999999999953 3899999999999999964211 124567778889999999985 568999999
Q ss_pred CCcEEEEECCCCeEEEE------ec--------CCCCeeEEEeecC---CeEEEEECCCceeccccceeeeeeeCCCCCC
Q 021399 73 DQTAKLWNVETGAQLFT------FN--------FDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQG 135 (313)
Q Consensus 73 D~~v~vWd~~~~~~~~~------~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (313)
||++|||+.-+.-.+.. +. ...+..++.|.+. ...+++..+.-..-.....++. +......
T Consensus 135 DG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye--~~e~~rK 212 (361)
T KOG2445|consen 135 DGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYE--YNENGRK 212 (361)
T ss_pred CcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEE--ecCCcce
Confidence 99999998755322211 11 2234557777753 2333333332000000011111 1100001
Q ss_pred CceEEEecCCCCceEEEEEccCC----CEEEEeeCCCeEEEEECCCCc-----------------eeeecccccCceece
Q 021399 136 GESVLILKGPQGRINRAVWGPLN----RTIISAGEDAIVRIWDTETGK-----------------LLKESDKETGHKKTI 194 (313)
Q Consensus 136 ~~~~~~~~~~~~~i~~~~~~~~~----~~i~t~~~d~~i~lwd~~~~~-----------------~~~~~~~~~~h~~~v 194 (313)
-..+..+.+|..+|+.++|.|.- ..+|+++.|| |+||.++... .+..+.....|+..|
T Consensus 213 w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V 291 (361)
T KOG2445|consen 213 WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV 291 (361)
T ss_pred eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce
Confidence 12344566899999999999873 4689999999 9999976311 122333456799999
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEEECC---CCcEEEEEecCCceeE
Q 021399 195 TSLAKAADGSHFLTGSLDKSAKLWDAR---TLELIKTYVTERPVNA 237 (313)
Q Consensus 195 ~~~~~s~~~~~l~s~s~dg~i~iwd~~---~~~~~~~~~~~~~~~~ 237 (313)
..+.|.-.|..|+|.+.||.||+|... ..+|...+..+..+..
T Consensus 292 Wrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~ 337 (361)
T KOG2445|consen 292 WRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTK 337 (361)
T ss_pred EEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCC
Confidence 999999999999999999999999643 2345555554444333
No 164
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.76 E-value=5.9e-17 Score=129.53 Aligned_cols=222 Identities=17% Similarity=0.326 Sum_probs=151.1
Q ss_pred ccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC--CCCce---EEEEECCCCCeEEEeeCCCcEEEEECCC-CeE--EE-E
Q 021399 19 NKDGDLLFSCAKDHTPTVWFADNGERLGTYRG--HNGAV---WCCDVSRDSMTLITGSADQTAKLWNVET-GAQ--LF-T 89 (313)
Q Consensus 19 s~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~--H~~~V---~~~~~~~~~~~l~s~s~D~~v~vWd~~~-~~~--~~-~ 89 (313)
.|+-.++++.+.|.-|++||.-+|+....+++ |..++ .+++|+|||+.|+. |....|+++|+.. |.- +. +
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa-GykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA-GYKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEee-cccceEEEeeccCCCCCCcchhh
Confidence 47788999999999999999999998888876 55544 68999999998775 6788999999943 321 10 1
Q ss_pred ec-----CCCCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399 90 FN-----FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (313)
Q Consensus 90 ~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t 163 (313)
+. ...-+.+++|+|-+. ..++.+ ..+...+-. .....++..+-+|.+.|+.++|.++|+.+.+
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gs--------Y~q~~giy~---~~~~~pl~llggh~gGvThL~~~edGn~lfs 267 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGS--------YGQRVGIYN---DDGRRPLQLLGGHGGGVTHLQWCEDGNKLFS 267 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeec--------ccceeeeEe---cCCCCceeeecccCCCeeeEEeccCcCeecc
Confidence 11 123345556666332 222211 111111111 1234566667799999999999999999999
Q ss_pred eeC-CCeEEEEECCCCc-eeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC-CcEEEEE-ecCCceeEEE
Q 021399 164 AGE-DAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART-LELIKTY-VTERPVNAVT 239 (313)
Q Consensus 164 ~~~-d~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~-~~~~~~~~~~ 239 (313)
|.. |.+|..||++..+ ++-.+..+.+....-.-+...|++.+|++|+.||.|++||+++ +..+..+ .....++.++
T Consensus 268 GaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvs 347 (406)
T KOG2919|consen 268 GARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVS 347 (406)
T ss_pred cccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccccccee
Confidence 875 6789999997543 3322222112112222345679999999999999999999998 5544444 3456799999
Q ss_pred eccCCCEEEEccc
Q 021399 240 MSPLLDHVVLGGG 252 (313)
Q Consensus 240 ~~p~~~~~~~~~~ 252 (313)
++|.-..++++.|
T Consensus 348 lnP~mpilatssG 360 (406)
T KOG2919|consen 348 LNPIMPILATSSG 360 (406)
T ss_pred cCcccceeeeccC
Confidence 9999887777655
No 165
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.76 E-value=1.9e-17 Score=140.41 Aligned_cols=203 Identities=19% Similarity=0.260 Sum_probs=149.2
Q ss_pred CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEe
Q 021399 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF 101 (313)
Q Consensus 22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~ 101 (313)
.+.|+.++.||.+.|-+ +.+++.....+|.++|.+-.|+|||.-|+|+|.||.||+|+-...-.-.......++.++.|
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEE
Confidence 45788899999988875 67778888999999999999999999999999999999998554332222345678888899
Q ss_pred ecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCcee
Q 021399 102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 181 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~ 181 (313)
.|+...++.....- +..+.+ .....+..++.|.+-|.++.|++..+.|++||+|.+.++||..- ..+
T Consensus 154 ~p~S~~vl~c~g~h------~~IKpL------~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G-~~L 220 (737)
T KOG1524|consen 154 APNSNSIVFCQGGH------ISIKPL------AANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG-ANL 220 (737)
T ss_pred CCCCCceEEecCCe------EEEeec------ccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC-ccc
Confidence 88765544432211 111111 12234567789999999999999999999999999999999764 332
Q ss_pred eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccc
Q 021399 182 KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQ 253 (313)
Q Consensus 182 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 253 (313)
.....|...|++++|.|+ ..++.+|. +++|+=. ...+.+..++|+|+|.++..+.+.
T Consensus 221 ---f~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~----------p~~GSifnlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 221 ---FTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFSS----------PRVGSIFNLSWSADGTQATCGTST 277 (737)
T ss_pred ---ccCChhccceeeeeeccc-cceeeeee-eeeeecC----------CCccceEEEEEcCCCceeeccccC
Confidence 223468999999999999 55666654 3444111 223568899999999987665443
No 166
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.2e-16 Score=123.15 Aligned_cols=174 Identities=17% Similarity=0.250 Sum_probs=127.2
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCC----------cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----------ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~----------~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
.|..-+++|-+++|+.|+.+|.|-+..++.- ..+-.+++|+++|+.++|.. .+|++|+ ||.|+-|.-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W 88 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW 88 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence 3556678999999999999999999976631 12445689999999999984 3677766 599999875
Q ss_pred CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
.+...-. ....+|++.. ...+- ...-..|+.+...|.++.+
T Consensus 89 ~E~~es~-------------------------------~~K~lwe~~~------P~~~~--~~evPeINam~ldP~enSi 129 (325)
T KOG0649|consen 89 NEEEESL-------------------------------ATKRLWEVKI------PMQVD--AVEVPEINAMWLDPSENSI 129 (325)
T ss_pred hhhhhhc-------------------------------cchhhhhhcC------ccccC--cccCCccceeEeccCCCcE
Confidence 4432100 0000011000 00000 0112357788888999999
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
++++.|+.++.||+++++.-+++. +|.+.+.++..-.....|+||+.||++|+||+++++++.++.
T Consensus 130 ~~AgGD~~~y~~dlE~G~i~r~~r---GHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 130 LFAGGDGVIYQVDLEDGRIQREYR---GHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred EEecCCeEEEEEEecCCEEEEEEc---CCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence 999999999999999998766654 899999999885555679999999999999999999998875
No 167
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.75 E-value=7.4e-17 Score=134.27 Aligned_cols=203 Identities=18% Similarity=0.263 Sum_probs=146.3
Q ss_pred ccccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcE--EE----------------------------------
Q 021399 4 ILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGER--LG---------------------------------- 46 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~--~~---------------------------------- 46 (313)
.++..|.++|.++.|+|.. .++++.|.||+||.-|++.+.. +.
T Consensus 228 ~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD 307 (498)
T KOG4328|consen 228 YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVID 307 (498)
T ss_pred EEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEE
Confidence 3567899999999999965 6999999999999998875321 00
Q ss_pred ---------EecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCce
Q 021399 47 ---------TYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFM 116 (313)
Q Consensus 47 ---------~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (313)
.++-|+..|.+++++|.. .+++|||.|++++|||++.-...
T Consensus 308 ~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K----------------------------- 358 (498)
T KOG4328|consen 308 LRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK----------------------------- 358 (498)
T ss_pred eecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCC-----------------------------
Confidence 013567788999999865 47899999999999998742110
Q ss_pred eccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECC----CCceeeecccccCcee
Q 021399 117 ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTE----TGKLLKESDKETGHKK 192 (313)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~----~~~~~~~~~~~~~h~~ 192 (313)
..+.+....|.-.|++++|+|.+..++|.+.|..|+|||.. .-.+..++.+...+..
T Consensus 359 -------------------~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~R 419 (498)
T KOG4328|consen 359 -------------------ASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGR 419 (498)
T ss_pred -------------------CCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccc
Confidence 00122233467789999999999889999999999999973 2233344432222223
Q ss_pred ce--EEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCc--ee-EEEeccCCCEEEEccccc
Q 021399 193 TI--TSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP--VN-AVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 193 ~v--~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~-~~~~~p~~~~~~~~~~~~ 254 (313)
.+ ...+|.|+.++|+.|-.-..|-++|...++.+.++..+.. |. -.+|||..+.+++++...
T Consensus 420 wlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~ 486 (498)
T KOG4328|consen 420 WLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS 486 (498)
T ss_pred cccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCcc
Confidence 33 3457999999999999999999999998887777654332 33 367999988766655443
No 168
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=1.6e-14 Score=126.90 Aligned_cols=275 Identities=30% Similarity=0.472 Sum_probs=185.3
Q ss_pred cccccccceeEEEEccCCCEEEEeeC-CCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVE 82 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~-d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~ 82 (313)
.+.+|...|..+.|+|+++.+++++. |+.+++|+..++..+..+.+|...|.+++|+|++. .+++++.|+++++||..
T Consensus 150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~ 229 (466)
T COG2319 150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS 229 (466)
T ss_pred EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECC
Confidence 57789999999999999999999986 99999999999889999999999999999999987 66666999999999988
Q ss_pred CCeEEE-EecCCCCeeEEEeecCCeEEE-EECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399 83 TGAQLF-TFNFDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 83 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (313)
.+.... .+..........|.+...... ...+. ...+++.... ........+|...+..+.|.|.+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~------~~~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~ 298 (466)
T COG2319 230 TGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDG------TIRLWDLRSS-----SSLLRTLSGHSSSVLSVAFSPDGKL 298 (466)
T ss_pred CCcEEeeecCCCCcceeEeECCCCCEEEEecCCC------cEEEeeecCC-----CcEEEEEecCCccEEEEEECCCCCE
Confidence 766665 333322222225666653333 22222 2222322211 1112222677888999999998888
Q ss_pred EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEe-eCCCcEEEEECCCCcEEEEEecCCceeEEE
Q 021399 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVTERPVNAVT 239 (313)
Q Consensus 161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 239 (313)
+++++.|+.+++||........... ...|...+..+.+.+++..++.+ ..|+.+.+|+...............+..+.
T Consensus 299 ~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (466)
T COG2319 299 LASGSSDGTVRLWDLETGKLLSSLT-LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVS 377 (466)
T ss_pred EEEeeCCCcEEEEEcCCCceEEEee-ecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCceEEEEE
Confidence 8889989889999988766544332 23466678888884333556666 688999999998877333333333377888
Q ss_pred eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
+.+ . ....+.......+. +|+............+...+....+++++..++-
T Consensus 378 ~~~-~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (466)
T COG2319 378 FSP-D-GRVVSSGSTDGTVR------------LWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLAS 429 (466)
T ss_pred ECC-C-CCEEEEecCCCceE------------EEecccCeeeeeccCCCCcEEEEEECCCCcEEEE
Confidence 888 6 44444222223333 3443333222222222278888888988887654
No 169
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.74 E-value=1.5e-16 Score=133.89 Aligned_cols=186 Identities=17% Similarity=0.278 Sum_probs=150.1
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCC-ceEEEEECCCCC-eEEEeeCCCcEEEEEC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG-AVWCCDVSRDSM-TLITGSADQTAKLWNV 81 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~-~V~~~~~~~~~~-~l~s~s~D~~v~vWd~ 81 (313)
+-|++|..-|+++.|.-+..+|++++..|.|.|..+.++..-.+|..-.+ .|.-+.|+|..+ +|.++|.+|.|.+||+
T Consensus 115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv 194 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV 194 (673)
T ss_pred hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence 45899999999999999999999999999999999999887777765444 455789999876 6678899999999998
Q ss_pred CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC-CE
Q 021399 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RT 160 (313)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 160 (313)
....++.. ..+.|..+...++|+|.. ..
T Consensus 195 ~g~sp~~~---------------------------------------------------~~~~HsAP~~gicfspsne~l 223 (673)
T KOG4378|consen 195 QGMSPIFH---------------------------------------------------ASEAHSAPCRGICFSPSNEAL 223 (673)
T ss_pred cCCCcccc---------------------------------------------------hhhhccCCcCcceecCCccce
Confidence 76543211 113466777788898875 46
Q ss_pred EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC-cEEEEEe-cCCceeEE
Q 021399 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-ELIKTYV-TERPVNAV 238 (313)
Q Consensus 161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~-~~~~~~~~ 238 (313)
|++.|.|++|.+||..+.....++. .......++|+++|.+|+.|+..|.|..||++.. .++..+. +...+.++
T Consensus 224 ~vsVG~Dkki~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~v 299 (673)
T KOG4378|consen 224 LVSVGYDKKINIYDIRSQASTDRLT----YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRV 299 (673)
T ss_pred EEEecccceEEEeecccccccceee----ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEE
Confidence 7889999999999998776655553 3457899999999999999999999999999974 5666654 45679999
Q ss_pred EeccCC
Q 021399 239 TMSPLL 244 (313)
Q Consensus 239 ~~~p~~ 244 (313)
+|.|.-
T Consensus 300 afq~s~ 305 (673)
T KOG4378|consen 300 AFQPSP 305 (673)
T ss_pred Eeeecc
Confidence 998763
No 170
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=3.6e-16 Score=134.26 Aligned_cols=237 Identities=22% Similarity=0.319 Sum_probs=165.7
Q ss_pred EEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEE--ECC-Cceeccccc
Q 021399 46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI--TTD-PFMELNSAI 122 (313)
Q Consensus 46 ~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~ 122 (313)
..++||++.|.+++..|.|++|++||.||+|+||.+.++.++..+.+...+.++.|.|...++++ ... ....++...
T Consensus 394 lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~ 473 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIF 473 (733)
T ss_pred eeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccc
Confidence 45789999999999999999999999999999999999999999999999999999986544332 221 111111111
Q ss_pred e----e---ee-eeeC--------------CC--CCCCceEEEecCCCCceEEEEEccCCCEEEEeeC---CCeEEEEEC
Q 021399 123 H----V---KR-IARD--------------PA--DQGGESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVRIWDT 175 (313)
Q Consensus 123 ~----~---~~-~~~~--------------~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~---d~~i~lwd~ 175 (313)
. . .. +... .. +.....++..-.|...|.++.|+..|.+|++... ...|.|.++
T Consensus 474 G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQL 553 (733)
T KOG0650|consen 474 GDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQL 553 (733)
T ss_pred cchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEec
Confidence 1 0 00 0000 00 0001113344457788999999999999998754 346888887
Q ss_pred CCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEeccCCCEEEEccccc
Q 021399 176 ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 176 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~ 254 (313)
........+. -..+.+.++.|+|...+++.++. ..|++||+-.++.++++.. ..-+..++.+|.|+.+++++ .+
T Consensus 554 SK~~sQ~PF~---kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs-~d 628 (733)
T KOG0650|consen 554 SKRKSQSPFR---KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS-YD 628 (733)
T ss_pred ccccccCchh---hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec-CC
Confidence 6554333332 23567999999999999888886 5699999998877776643 34478899999999988754 33
Q ss_pred CceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399 255 ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (313)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd 299 (313)
. -+.++|.. .+.++.+.+..|..+|.+++|++-
T Consensus 629 ~-k~~WfDld-----------lsskPyk~lr~H~~avr~Va~H~r 661 (733)
T KOG0650|consen 629 K-KMCWFDLD-----------LSSKPYKTLRLHEKAVRSVAFHKR 661 (733)
T ss_pred C-eeEEEEcc-----------cCcchhHHhhhhhhhhhhhhhccc
Confidence 2 23333321 234556778889999999999864
No 171
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=6.6e-16 Score=136.98 Aligned_cols=221 Identities=17% Similarity=0.188 Sum_probs=145.1
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCC---CCeEEEeCCCCcE--EEEecCCCCceEEEEECCCCCeEEEe-eCCCcE
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITG-SADQTA 76 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d---~~i~iw~~~~~~~--~~~~~~H~~~V~~~~~~~~~~~l~s~-s~D~~v 76 (313)
++.+..|...+...+|||||++|+.++.+ ..|++||+.+++. +..+.+|. ..++|+|||+.++.+ +.+|.+
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~---~~~~wSPDG~~La~~~~~~g~~ 272 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHN---GAPAFSPDGSRLAFASSKDGVL 272 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCcc---CceeECCCCCEEEEEEecCCcE
Confidence 55677888889999999999999988754 3699999988753 44445544 467999999977765 468877
Q ss_pred EEEE--CCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE
Q 021399 77 KLWN--VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (313)
Q Consensus 77 ~vWd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (313)
.||. +.+++... +..+...+....|
T Consensus 273 ~Iy~~d~~~~~~~~-----------------------------------------------------lt~~~~~~~~~~w 299 (429)
T PRK01742 273 NIYVMGANGGTPSQ-----------------------------------------------------LTSGAGNNTEPSW 299 (429)
T ss_pred EEEEEECCCCCeEe-----------------------------------------------------eccCCCCcCCEEE
Confidence 7664 43332110 1112233456789
Q ss_pred ccCCCEEEEee-CCCeEEEEECCCC-ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC
Q 021399 155 GPLNRTIISAG-EDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232 (313)
Q Consensus 155 ~~~~~~i~t~~-~d~~i~lwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 232 (313)
+|+++.|+.++ .++..+||++... .....+ .+.. ...+|+|||+.|+..+.++ +.+||+++++... +...
T Consensus 300 SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l----~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-lt~~ 371 (429)
T PRK01742 300 SPDGQSILFTSDRSGSPQVYRMSASGGGASLV----GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-LSST 371 (429)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCCCeEEe----cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-ecCC
Confidence 99999877554 5677888876432 222222 1222 3568999999998888765 5569999887543 2222
Q ss_pred CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (313)
Q Consensus 233 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd 299 (313)
.....++|+|++..++.+....... .+..++ ..++.+..+.+|.+.+...+|||-
T Consensus 372 ~~~~~~~~sPdG~~i~~~s~~g~~~-----------~l~~~~-~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 372 FLDESPSISPNGIMIIYSSTQGLGK-----------VLQLVS-ADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCCceECCCCCEEEEEEcCCCce-----------EEEEEE-CCCCceEEccCCCCCCCCcccCCC
Confidence 2345678999999888765432211 111222 234455566788889999999984
No 172
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.72 E-value=1.1e-15 Score=120.60 Aligned_cols=252 Identities=17% Similarity=0.270 Sum_probs=165.3
Q ss_pred cccccccceeEEEEccCCCEEEE-eeCC-------CCeEEEeCCCC---------cEEEEec-CCCCceEEEEECCCCCe
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFS-CAKD-------HTPTVWFADNG---------ERLGTYR-GHNGAVWCCDVSRDSMT 66 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s-~s~d-------~~i~iw~~~~~---------~~~~~~~-~H~~~V~~~~~~~~~~~ 66 (313)
+|..|.+.|+.++-+|-.+.|++ +-.| ..+.||..... +++..+. .|-+.|.|+.|.|++..
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 57788999999999997665554 4332 34678976532 2233444 46678999999999988
Q ss_pred EEEeeCCCcEEEEECCCCeEE-EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCC
Q 021399 67 LITGSADQTAKLWNVETGAQL-FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145 (313)
Q Consensus 67 l~s~s~D~~v~vWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (313)
+++-. |..|.+|++.++..+ ..... . .+ ..+
T Consensus 138 lasm~-dn~i~l~~l~ess~~vaev~s--------------------s--------------------~s-------~e~ 169 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVAEVLS--------------------S--------------------ES-------AEM 169 (370)
T ss_pred eEEec-cCceEEEEcccCcchheeecc--------------------c--------------------cc-------ccc
Confidence 87644 899999999876432 10000 0 00 002
Q ss_pred CCceEEEEEcc--CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCC
Q 021399 146 QGRINRAVWGP--LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDART 222 (313)
Q Consensus 146 ~~~i~~~~~~~--~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~ 222 (313)
.....+-.|+| +++.+++.+ |+++..||+++.+..-.+. ..|...|+.+.|.|+.. +|+||+.||.|++||.|.
T Consensus 170 ~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~--dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~ 246 (370)
T KOG1007|consen 170 RHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE--DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRK 246 (370)
T ss_pred cceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh--hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccC
Confidence 22344556777 466666655 7899999999876554443 46889999999999866 588999999999999986
Q ss_pred -CcEEEEEecC-CceeEEEeccCCCEEEEcccccCceeEeeccCCC-ceee-------eeeehhhhh--------hhccc
Q 021399 223 -LELIKTYVTE-RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAG-KFEA-------KFFDKILQE--------EIGGV 284 (313)
Q Consensus 223 -~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~--------~~~~~ 284 (313)
..++.++... .=+-+|-|+|..++++.+||+|...+...-...- .-.+ ..-+....+ .+..+
T Consensus 247 tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty 326 (370)
T KOG1007|consen 247 TKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY 326 (370)
T ss_pred CCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc
Confidence 4566666533 3467889999999999999988765432221110 0000 011111111 23356
Q ss_pred cccccceeEEEECCC-CCeeEEEE
Q 021399 285 KGHFGPINALAFNPD-GKRYGFLL 307 (313)
Q Consensus 285 ~~h~~~V~~~~fspd-gk~~~~~~ 307 (313)
..|..-|++++||.- .=+||.|-
T Consensus 327 dehEDSVY~~aWSsadPWiFASLS 350 (370)
T KOG1007|consen 327 DEHEDSVYALAWSSADPWIFASLS 350 (370)
T ss_pred cccccceEEEeeccCCCeeEEEec
Confidence 679999999999764 44577664
No 173
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.72 E-value=3.7e-16 Score=135.08 Aligned_cols=196 Identities=17% Similarity=0.201 Sum_probs=137.0
Q ss_pred EEEEccC---CCEEEEeeCCCCeEEEeCCCCc------EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399 15 YLKYNKD---GDLLFSCAKDHTPTVWFADNGE------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (313)
Q Consensus 15 ~~~fs~~---g~~l~s~s~d~~i~iw~~~~~~------~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~ 85 (313)
.+.|++- ...|+.+..||.|.++|..... .++...+|.+.|+.+.|-|....|++++.|.++++||+.++.
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~ 133 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR 133 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence 4677643 4578889999999999876442 235567899999999999966699999999999999998765
Q ss_pred EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC-CEEEEe
Q 021399 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISA 164 (313)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~i~t~ 164 (313)
++. .....||...+.+++|.|.. ..|++|
T Consensus 134 l~G--------------------------------------------------~~~~~GH~~SvkS~cf~~~n~~vF~tG 163 (720)
T KOG0321|consen 134 LVG--------------------------------------------------GRLNLGHTGSVKSECFMPTNPAVFCTG 163 (720)
T ss_pred eec--------------------------------------------------ceeecccccccchhhhccCCCcceeec
Confidence 431 11235678888888888765 468899
Q ss_pred eCCCeEEEEECCCCc--eeeec----------------------ccccCceeceEE---EEECCCCCEEEEeeC-CCcEE
Q 021399 165 GEDAIVRIWDTETGK--LLKES----------------------DKETGHKKTITS---LAKAADGSHFLTGSL-DKSAK 216 (313)
Q Consensus 165 ~~d~~i~lwd~~~~~--~~~~~----------------------~~~~~h~~~v~~---~~~s~~~~~l~s~s~-dg~i~ 216 (313)
+.||.|.|||++-.. .+.++ .....+...|.+ +.+..|...||+++. |+.|+
T Consensus 164 gRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iK 243 (720)
T KOG0321|consen 164 GRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIK 243 (720)
T ss_pred cCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceE
Confidence 999999999975432 00000 000123344444 456678899999998 99999
Q ss_pred EEECCCCcEEEEEec------------CCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399 217 LWDARTLELIKTYVT------------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262 (313)
Q Consensus 217 iwd~~~~~~~~~~~~------------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (313)
+||+++......... ...+.++.....|.++++.+.+ +.|+.|+
T Consensus 244 VWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD--~sIy~yn 299 (720)
T KOG0321|consen 244 VWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD--NSIYFYN 299 (720)
T ss_pred EEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC--CcEEEEe
Confidence 999998755433211 1124566667778898888763 3344444
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.72 E-value=2.5e-16 Score=129.39 Aligned_cols=100 Identities=24% Similarity=0.423 Sum_probs=82.0
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCC--------C-----C---cEEEEecCCCCceEEEEECCCCCeEE
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--------N-----G---ERLGTYRGHNGAVWCCDVSRDSMTLI 68 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~--------~-----~---~~~~~~~~H~~~V~~~~~~~~~~~l~ 68 (313)
.|..|.+.|++++|+|+|+.|+||+.+|.|.+|-.. + . ...+.+++|...|..++|+|+++.++
T Consensus 60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~ 139 (434)
T KOG1009|consen 60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLV 139 (434)
T ss_pred cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceee
Confidence 578899999999999999999999999999999654 2 1 24567889999999999999999999
Q ss_pred EeeCCCcEEEEECCCCeEEEEec-CCCCeeEEEeecC
Q 021399 69 TGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVG 104 (313)
Q Consensus 69 s~s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~ 104 (313)
+++.|.++++||+..++....+. +..-+..+.|.|.
T Consensus 140 s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl 176 (434)
T KOG1009|consen 140 SGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPL 176 (434)
T ss_pred eeeccceEEEEEeccceeEeeccccccccceeecchh
Confidence 99999999999999998776553 2233334444443
No 175
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=7.3e-15 Score=131.46 Aligned_cols=283 Identities=18% Similarity=0.235 Sum_probs=180.7
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC---eEEEeeCCCcEEEE
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM---TLITGSADQTAKLW 79 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~---~l~s~s~D~~v~vW 79 (313)
|..|-|-...-..-.||+|+++++.+. +..|+||...++.++..+.+|..++..+.+.|... ++.+++.||+|++|
T Consensus 9 ~~~lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw 87 (792)
T KOG1963|consen 9 PALLGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW 87 (792)
T ss_pred eeeeccccceecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence 445555555555678999999999665 46899999999999999999999999999987643 67799999999999
Q ss_pred ECCCCeEEEEecCCCCeeEEEeec----CCeEEEEECCCceec-----cccceeee--eeeCCCCCCCceEEEecCCCCc
Q 021399 80 NVETGAQLFTFNFDSPARSVDFAV----GDKLAVITTDPFMEL-----NSAIHVKR--IARDPADQGGESVLILKGPQGR 148 (313)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 148 (313)
|-..+..+.++....++..+.+.+ ....+..+......+ ....+..+ +.... ...++ ....+..
T Consensus 88 d~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~-~~~~d---~~~~~~~- 162 (792)
T KOG1963|consen 88 DWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFD-SAKGD---FLKEHQE- 162 (792)
T ss_pred cCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeecc-ccchh---hhhhhcC-
Confidence 999999988887666665554432 122221221110000 00000000 00000 00000 0111111
Q ss_pred eEEEEEccCCCEEEEeeCCCeEEEEECCCCce-eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEE-CC-CCc-
Q 021399 149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD-AR-TLE- 224 (313)
Q Consensus 149 i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd-~~-~~~- 224 (313)
-..+..++.+++....- +..+.+|...++.. ........-|...+++++++|++.++|+|..||+|.+|. .. ...
T Consensus 163 ~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~ 241 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS 241 (792)
T ss_pred CccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence 23566777777655544 55688998876431 111122234777789999999999999999999999994 33 111
Q ss_pred -EEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399 225 -LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302 (313)
Q Consensus 225 -~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~ 302 (313)
-...+. +...+++++|+++|.+++.||... .+. .|...++++ +-+.--.++|..+.+|||+..
T Consensus 242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~--VLv------------~Wq~~T~~k-qfLPRLgs~I~~i~vS~ds~~ 306 (792)
T KOG1963|consen 242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREG--VLV------------LWQLETGKK-QFLPRLGSPILHIVVSPDSDL 306 (792)
T ss_pred ccceEEEecccccceeEEecCCceEeecccce--EEE------------EEeecCCCc-ccccccCCeeEEEEEcCCCCe
Confidence 123333 456899999999999988776432 222 344333331 112223789999999999999
Q ss_pred eEEEE
Q 021399 303 YGFLL 307 (313)
Q Consensus 303 ~~~~~ 307 (313)
++.+.
T Consensus 307 ~sl~~ 311 (792)
T KOG1963|consen 307 YSLVL 311 (792)
T ss_pred EEEEe
Confidence 88764
No 176
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=4.5e-17 Score=149.10 Aligned_cols=209 Identities=20% Similarity=0.304 Sum_probs=160.8
Q ss_pred cccccccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcEEEEec--CCCCceEEEEECCC-CCeEEEeeCCCcEEEEE
Q 021399 5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRD-SMTLITGSADQTAKLWN 80 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~~~--~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd 80 (313)
....|+++|..+.|++... +|+||+.||.|.|||+++.+.-.+.. .-.+.|.+++|+.. ...|+|++.+|++-|||
T Consensus 111 ~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD 190 (1049)
T KOG0307|consen 111 TKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD 190 (1049)
T ss_pred hhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence 4567999999999999865 99999999999999999866554442 24578999999865 45899999999999999
Q ss_pred CCCCeEEEEecCCC---CeeEEEeecCC--eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399 81 VETGAQLFTFNFDS---PARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (313)
Q Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (313)
++..+.+..+.... ....+.|+|+. ++++.+.+.- ...+.+|++. ....++..+++|+..|.++.|+
T Consensus 191 lr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~---~PviqlWDlR-----~assP~k~~~~H~~GilslsWc 262 (1049)
T KOG0307|consen 191 LRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDS---APVIQLWDLR-----FASSPLKILEGHQRGILSLSWC 262 (1049)
T ss_pred ccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCC---CceeEeeccc-----ccCCchhhhcccccceeeeccC
Confidence 99887776655433 35577888853 4444443321 1223334322 1234566778999999999999
Q ss_pred cCC-CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCCCc
Q 021399 156 PLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLE 224 (313)
Q Consensus 156 ~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~~ 224 (313)
+.+ .++++++.|+.|.+|+.++++.+.++. ....++..+.|.|... .+++++.||.|-|+.+....
T Consensus 263 ~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p---~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 263 PQDPRLLLSSGKDNRIICWNPNTGEVLGELP---AQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCCchhhhcccCCCCeeEecCCCceEeeecC---CCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 887 788999999999999999998887764 2567899999998766 78889999999999987643
No 177
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.71 E-value=2.1e-15 Score=120.62 Aligned_cols=165 Identities=18% Similarity=0.268 Sum_probs=131.6
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC---cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~---~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
.+.--.++|+|-+|++|+..++.+-....+.||..... +..++++.|...|++++|+|..+.++||+.|....||..
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~ 84 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ 84 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence 34445678999999999999999999999999976554 467899999999999999999999999999999999987
Q ss_pred CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
.++.. + .+..++.-++....++.|+|.++.|
T Consensus 85 ~~~~~-W------------------------------------------------kptlvLlRiNrAAt~V~WsP~enkF 115 (361)
T KOG1523|consen 85 PSGGT-W------------------------------------------------KPTLVLLRINRAATCVKWSPKENKF 115 (361)
T ss_pred CCCCe-e------------------------------------------------ccceeEEEeccceeeEeecCcCceE
Confidence 43210 0 1122233345567889999999999
Q ss_pred EEeeCCCeEEEEECCCCcee--e-ecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399 162 ISAGEDAIVRIWDTETGKLL--K-ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~--~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~ 220 (313)
++|+....|.+|=.+..... + .+. ..++..|++++|+|++-.++.||.|+++|++..
T Consensus 116 AVgSgar~isVcy~E~ENdWWVsKhik--kPirStv~sldWhpnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 116 AVGSGARLISVCYYEQENDWWVSKHIK--KPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred EeccCccEEEEEEEecccceehhhhhC--CccccceeeeeccCCcceecccccCcceeEEEE
Confidence 99999999999976643321 1 111 246789999999999999999999999999963
No 178
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=1.8e-15 Score=119.35 Aligned_cols=195 Identities=20% Similarity=0.315 Sum_probs=141.5
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE-EEEe-----cCCCCceEEEEECC--CCCeEEEeeCCCcEEEE
Q 021399 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-LGTY-----RGHNGAVWCCDVSR--DSMTLITGSADQTAKLW 79 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~-~~~~-----~~H~~~V~~~~~~~--~~~~l~s~s~D~~v~vW 79 (313)
.+-+.|.|+.|.|+++.|++-. |..|.+|+.+.+.. +..+ .+|+...++-+|+| +++.+++ ..|++++.|
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~ 198 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFW 198 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEE
Confidence 3455799999999999999776 78999999987755 3333 23677788899998 6777766 568999999
Q ss_pred ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC-
Q 021399 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN- 158 (313)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 158 (313)
|+++.+....+. ..|...+..+.|+|+-
T Consensus 199 D~RT~~~~~sI~---------------------------------------------------dAHgq~vrdlDfNpnkq 227 (370)
T KOG1007|consen 199 DLRTMKKNNSIE---------------------------------------------------DAHGQRVRDLDFNPNKQ 227 (370)
T ss_pred Eccchhhhcchh---------------------------------------------------hhhcceeeeccCCCCce
Confidence 999765432221 1244456666677764
Q ss_pred CEEEEeeCCCeEEEEECCCCc-eeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCCCc------------
Q 021399 159 RTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLE------------ 224 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~~------------ 224 (313)
.++++||+||.|++||.++.+ ++.+ ..+|...|.++.|.|... .|+||+.|..|.+|...+-.
T Consensus 228 ~~lvt~gDdgyvriWD~R~tk~pv~e---l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~des 304 (370)
T KOG1007|consen 228 HILVTCGDDGYVRIWDTRKTKFPVQE---LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDES 304 (370)
T ss_pred EEEEEcCCCccEEEEeccCCCccccc---cCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccc
Confidence 467899999999999987543 3333 357999999999998644 68899999999999754311
Q ss_pred ------------E-----EEEEe-cCCceeEEEeccCCCEEEEcccccCcee
Q 021399 225 ------------L-----IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAV 258 (313)
Q Consensus 225 ------------~-----~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 258 (313)
+ +.++. ++..+.+++|+...+.++++=+.|+..+
T Consensus 305 e~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRvi 356 (370)
T KOG1007|consen 305 ESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVI 356 (370)
T ss_pred cCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEE
Confidence 1 11221 3456899999998898888766665443
No 179
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=5.1e-16 Score=132.21 Aligned_cols=220 Identities=20% Similarity=0.303 Sum_probs=150.7
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec-CCCCceEEEEECC--CCCeEEEeeCCCcEEEEE
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSR--DSMTLITGSADQTAKLWN 80 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~--~~~~l~s~s~D~~v~vWd 80 (313)
..|.||++=|+||.|+.||.+|+|||.|-.+.|||.-..++++.+. ||...|+++.|-| ++++++||+.|..|+++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 4789999999999999999999999999999999998888877774 7999999999987 456899999999999999
Q ss_pred CCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC-C
Q 021399 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-R 159 (313)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 159 (313)
+.+.+.-- .. ....+....+..|..++..++-.|.+ .
T Consensus 124 l~~~~~~~---~d---------------------------------------~~~~~~~~~~~cht~rVKria~~p~~Ph 161 (758)
T KOG1310|consen 124 LDSSKEGG---MD---------------------------------------HGMEETTRCWSCHTDRVKRIATAPNGPH 161 (758)
T ss_pred cccccccc---cc---------------------------------------cCccchhhhhhhhhhhhhheecCCCCCc
Confidence 97532100 00 00011122334455566666666666 6
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecc-------cccCceeceEEEEECCC-CCEEEEeeCCCcEEEEECCCC-c------
Q 021399 160 TIISAGEDAIVRIWDTETGKLLKESD-------KETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTL-E------ 224 (313)
Q Consensus 160 ~i~t~~~d~~i~lwd~~~~~~~~~~~-------~~~~h~~~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~-~------ 224 (313)
.|.++++||+|+-+|++.......-. .....--...++..+|. ..+|+.|+.|-..++||.+.. +
T Consensus 162 tfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~ 241 (758)
T KOG1310|consen 162 TFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDG 241 (758)
T ss_pred eEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCc
Confidence 78999999999999987532111100 00011234567778875 457899999999999994321 1
Q ss_pred -----------EEEEEecC-------------CceeEEEeccCCCEEEEcccccCceeEeeccCCCc
Q 021399 225 -----------LIKTYVTE-------------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK 267 (313)
Q Consensus 225 -----------~~~~~~~~-------------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (313)
|++-+... ..+.-+.|+|.|.-+++.=+ +-.||.+|...++
T Consensus 242 ~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~--gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 242 TMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWG--GEHVYLFDVNEDK 306 (758)
T ss_pred cccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeC--CeEEEEEeecCCC
Confidence 22222110 12456789999888887643 2346777654433
No 180
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.2e-14 Score=116.60 Aligned_cols=253 Identities=15% Similarity=0.195 Sum_probs=165.3
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC-CCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEE
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFT 89 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~ 89 (313)
.+..++|++.--.++++..|..|++|+-.. +....++. -...|.|++|-|.+. .|+.|. -+-|.+|........
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgC-r~gIciW~~s~tln~-- 175 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGC-RAGICIWSDSRTLNA-- 175 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeee-cceeEEEEcCccccc--
Confidence 456789999878889999999999998665 44445554 346799999999765 455544 456889986532110
Q ss_pred ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee-CCC
Q 021399 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDA 168 (313)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~-~d~ 168 (313)
...+.. .......+....+| .+|++++|+++|..+++++ .|.
T Consensus 176 ---~r~~~~---------------------------------~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gss 218 (445)
T KOG2139|consen 176 ---NRNIRM---------------------------------MSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSS 218 (445)
T ss_pred ---cccccc---------------------------------ccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcc
Confidence 000000 00001122333444 6899999999999999987 456
Q ss_pred eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEE-CCCCcEEEEEecCCceeEEEeccCCCEE
Q 021399 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD-ARTLELIKTYVTERPVNAVTMSPLLDHV 247 (313)
Q Consensus 169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 247 (313)
.|.|||+.++.++.-.. -.-+.+.-+.|||||++|+++..|+..++|+ .++..+.+-....+.+...+|+|.|..+
T Consensus 219 si~iWdpdtg~~~pL~~---~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 219 SIMIWDPDTGQKIPLIP---KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFL 295 (445)
T ss_pred eEEEEcCCCCCcccccc---cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEE
Confidence 89999998877543221 1245788899999999999999999999994 4445555555556689999999999988
Q ss_pred EEcccccCcee-EeeccCCCcee--------eeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 248 VLGGGQDASAV-TTTDHRAGKFE--------AKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 248 ~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
+.+........ ..++.+...+. .-+-|...-.....-.--.+...+++|.|.|.++|.++-
T Consensus 296 Lf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fK 365 (445)
T KOG2139|consen 296 LFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFK 365 (445)
T ss_pred EEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEc
Confidence 87754433222 23344333221 111222111111111112578899999999999998763
No 181
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.68 E-value=8.7e-16 Score=132.94 Aligned_cols=189 Identities=20% Similarity=0.263 Sum_probs=138.9
Q ss_pred ceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCC-------cEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECC
Q 021399 12 PLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 12 ~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~ 82 (313)
.|+.+.|+| |.+.|+.+..||.|++|.+..+ +..+.+.+|...|+++.|+|= .+.|++++.|.+|++||+.
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~ 708 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA 708 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence 478899998 5689999999999999987754 345678999999999999984 4589999999999999988
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
+++. ...+.+|...|..++|+|+|+.++
T Consensus 709 ~~~~----------------------------------------------------~~~l~gHtdqIf~~AWSpdGr~~A 736 (1012)
T KOG1445|consen 709 NAKL----------------------------------------------------YSRLVGHTDQIFGIAWSPDGRRIA 736 (1012)
T ss_pred hhhh----------------------------------------------------hheeccCcCceeEEEECCCCccee
Confidence 6542 123568999999999999999999
Q ss_pred EeeCCCeEEEEECCCCce-eeecccccCceeceEEEEECCCCCEEEEeeCC----CcEEEEECCCC--cEEEEEec--CC
Q 021399 163 SAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLD----KSAKLWDARTL--ELIKTYVT--ER 233 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d----g~i~iwd~~~~--~~~~~~~~--~~ 233 (313)
+.+.||+|++++.+++.. +.+-....+ ..--.+.|.-||.+++..+.| .+|.+||.++. .++.+... ..
T Consensus 737 tVcKDg~~rVy~Prs~e~pv~Eg~gpvg--tRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvap 814 (1012)
T KOG1445|consen 737 TVCKDGTLRVYEPRSREQPVYEGKGPVG--TRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAP 814 (1012)
T ss_pred eeecCceEEEeCCCCCCCccccCCCCcc--CcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecccC
Confidence 999999999999887642 332221111 222346688899999888776 46889998764 34433321 11
Q ss_pred ceeEEEeccCCCEEEEccccc
Q 021399 234 PVNAVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 234 ~~~~~~~~p~~~~~~~~~~~~ 254 (313)
...--.+.++.+.++++|..|
T Consensus 815 s~LvP~YD~Ds~~lfltGKGD 835 (1012)
T KOG1445|consen 815 SPLVPHYDYDSNVLFLTGKGD 835 (1012)
T ss_pred ccccccccCCCceEEEecCCC
Confidence 122223456667777776544
No 182
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=1.6e-14 Score=129.24 Aligned_cols=290 Identities=19% Similarity=0.237 Sum_probs=180.3
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCCeEEEe-CC---CCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWF-AD---NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~-~~---~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
+.|...++|.++||++.++++|..||.|.+|. .. .......+.-|..+|.+++|+++|.+|+|||+.+.+-+|.++
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 45777789999999999999999999999994 33 223466788899999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEE-ECCCceeccc--cceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVI-TTDPFMELNS--AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (313)
+++..+......++..+.++|++....+ ..|.-+.+-. ................+. -...++-...++++|..+
T Consensus 282 T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~---k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPST---KTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccc---cccccccceeEEEcCCCC
Confidence 9987666677889999999986654443 3343221110 000000000000000000 011233446677888777
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecccc-----c---CceeceEEEEECCCCCEEEEee--------CCC--cEEEEECC
Q 021399 160 TIISAGEDAIVRIWDTETGKLLKESDKE-----T---GHKKTITSLAKAADGSHFLTGS--------LDK--SAKLWDAR 221 (313)
Q Consensus 160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~-----~---~h~~~v~~~~~s~~~~~l~s~s--------~dg--~i~iwd~~ 221 (313)
.++-.+.-+.|.+||+.+.+.+..+... . .+...+++++.+.+|++++|.- .|| .+|+|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 7888899999999999877655443221 1 2345678888899999999863 344 46789543
Q ss_pred C----CcEEEEEe--cCCceeE-EEeccCCCEEEEcccccCceeEeeccCCCc---eeeeeeehhhhhhhccccccccce
Q 021399 222 T----LELIKTYV--TERPVNA-VTMSPLLDHVVLGGGQDASAVTTTDHRAGK---FEAKFFDKILQEEIGGVKGHFGPI 291 (313)
Q Consensus 222 ~----~~~~~~~~--~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~V 291 (313)
. ..+...+. ++....+ +..+|.....+++++.++ .+.+|-...-. -.-..|- ...++. -|..++
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg-~~KiW~~~~~~n~~k~~s~W~---c~~i~s--y~k~~i 512 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDG-DFKIWVFTDDSNIYKKSSNWT---CKAIGS--YHKTPI 512 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCC-eEEEEEEecccccCcCccceE---Eeeeec--cccCcc
Confidence 3 23333332 2222333 333444432444444332 22233221100 0011121 222333 378999
Q ss_pred eEEEECCCCCeeEE
Q 021399 292 NALAFNPDGKRYGF 305 (313)
Q Consensus 292 ~~~~fspdgk~~~~ 305 (313)
++++||.||..+|-
T Consensus 513 ~a~~fs~dGslla~ 526 (792)
T KOG1963|consen 513 TALCFSQDGSLLAV 526 (792)
T ss_pred cchhhcCCCcEEEE
Confidence 99999999987653
No 183
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.67 E-value=3.6e-14 Score=125.67 Aligned_cols=225 Identities=12% Similarity=0.085 Sum_probs=142.0
Q ss_pred cccccccccceeEEEEccCCCEEEEeeC---CCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEe-eCCC--cE
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAK---DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-SADQ--TA 76 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~---d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~-s~D~--~v 76 (313)
++.+..+...+...+|||||+.|+..+. +..+.+|++.+++.. .+....+.+..+.|+|||+.++.. +.++ .|
T Consensus 191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I 269 (429)
T PRK03629 191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 269 (429)
T ss_pred CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence 4445566778899999999999987653 456889999887542 222223334568999999876643 4455 47
Q ss_pred EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
.+||+.+++..... .+...+....|+|
T Consensus 270 ~~~d~~tg~~~~lt-----------------------------------------------------~~~~~~~~~~wSP 296 (429)
T PRK03629 270 YVMDLASGQIRQVT-----------------------------------------------------DGRSNNTEPTWFP 296 (429)
T ss_pred EEEECCCCCEEEcc-----------------------------------------------------CCCCCcCceEECC
Confidence 77888765432110 0112234567999
Q ss_pred CCCEEEEeeCC-C--eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC---CcEEEEECCCCcEEEEEe
Q 021399 157 LNRTIISAGED-A--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV 230 (313)
Q Consensus 157 ~~~~i~t~~~d-~--~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~ 230 (313)
+++.|+..+.+ + .|.++|+..+.. ..+.. +........|+|||++|+..+.+ ..|.+||+++++. ..+.
T Consensus 297 DG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~---~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt 371 (429)
T PRK03629 297 DSQNLAYTSDQAGRPQVYKVNINGGAP-QRITW---EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLT 371 (429)
T ss_pred CCCEEEEEeCCCCCceEEEEECCCCCe-EEeec---CCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeC
Confidence 99988776654 3 455557766543 22221 22345578899999998876654 3588899988864 3343
Q ss_pred cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC
Q 021399 231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298 (313)
Q Consensus 231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp 298 (313)
........+|+|++..++.++...... .+.+++. .++....+.+|.+.+...+|+|
T Consensus 372 ~~~~~~~p~~SpDG~~i~~~s~~~~~~-----------~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 372 DTFLDETPSIAPNGTMVIYSSSQGMGS-----------VLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCCCCCceECCCCCEEEEEEcCCCce-----------EEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 333345678999999888765432211 1223332 2333344567888899999987
No 184
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=4.1e-14 Score=125.78 Aligned_cols=224 Identities=13% Similarity=0.086 Sum_probs=142.4
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCC---CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeE-EEeeCCC--cE
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQ--TA 76 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d---~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~--~v 76 (313)
|+.+..|...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.. .+..+.+...+++|+|||+.+ ++.+.++ .|
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~I 274 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPEI 274 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCceE
Confidence 55677777889999999999999988743 46999999887653 334445555678999999865 4556665 48
Q ss_pred EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
.+||+.+++..... .+........|+|
T Consensus 275 y~~d~~~g~~~~lt-----------------------------------------------------~~~~~~~~~~~sp 301 (433)
T PRK04922 275 YVMDLGSRQLTRLT-----------------------------------------------------NHFGIDTEPTWAP 301 (433)
T ss_pred EEEECCCCCeEECc-----------------------------------------------------cCCCCccceEECC
Confidence 88888765432110 0111223457899
Q ss_pred CCCEEEEeeC-CC--eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC---cEEEEECCCCcEEEEEe
Q 021399 157 LNRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYV 230 (313)
Q Consensus 157 ~~~~i~t~~~-d~--~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~ 230 (313)
+++.++.++. ++ .|+++|+.+++.. .+.. +.......+|+|||+.|+..+.++ .|.+||+.+++.. .+.
T Consensus 302 DG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~---~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt 376 (433)
T PRK04922 302 DGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTF---QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT 376 (433)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCeE-Eeec---CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC
Confidence 9988877653 34 3777777665532 2221 222344689999999988765443 5899999887764 443
Q ss_pred cCCceeEEEeccCCCEEEEcccccC-ceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC
Q 021399 231 TERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298 (313)
Q Consensus 231 ~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp 298 (313)
........+|+|++..++.+....+ ..++ .++.. +.....+..+.+.+...+|+|
T Consensus 377 ~~~~~~~p~~spdG~~i~~~s~~~g~~~L~------------~~~~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 377 PGSLDESPSFAPNGSMVLYATREGGRGVLA------------AVSTD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCCCCCceECCCCCEEEEEEecCCceEEE------------EEECC-CCceEEcccCCCCCCCCccCC
Confidence 3333456789999998876543221 2233 33321 222223344556777778876
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.65 E-value=7.3e-15 Score=127.98 Aligned_cols=228 Identities=19% Similarity=0.296 Sum_probs=158.1
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec-CCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
.+|+||++-|+|++|+.||++++||+.|+.|.+|+.+- ...++ .|.+.|.|+.|+|-++.++||+-.. .-+|+.+
T Consensus 47 qtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsFNP~~h~LasCsLsd-FglWS~~ 122 (1081)
T KOG1538|consen 47 QPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSFNPITHQLASCSLSD-FGLWSPE 122 (1081)
T ss_pred cccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceeeeccCCeeeEeecCchHHHhhhcchhh-ccccChh
Confidence 47999999999999999999999999999999997543 23343 6999999999999999999998643 4579876
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEe---cCCCCceEEEEEccCC
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLIL---KGPQGRINRAVWGPLN 158 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~ 158 (313)
... +........+.+++|..+++..+. ..++.+.+ ++ ..++....+ -|++++|.+++|+|..
T Consensus 123 qK~-V~K~kss~R~~~CsWtnDGqylalG~~nGTIsi------RN-------k~gEek~~I~Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 123 QKS-VSKHKSSSRIICCSWTNDGQYLALGMFNGTISI------RN-------KNGEEKVKIERPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred hhh-HHhhhhheeEEEeeecCCCcEEEEeccCceEEe------ec-------CCCCcceEEeCCCCCCCCceEEEecCCC
Confidence 533 222223345667778776665544 33333322 11 111111122 2467889999999874
Q ss_pred -----CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cC
Q 021399 159 -----RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TE 232 (313)
Q Consensus 159 -----~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~ 232 (313)
..+++.....++..+.+. |+.+.. ...-+....|+.+.++|.+++.|+.|+.+++|. +.|-.+.+.. .+
T Consensus 189 g~G~~di~aV~DW~qTLSFy~Ls-G~~Igk---~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT-R~GvrLGTvg~~D 263 (1081)
T KOG1538|consen 189 GEGRNDILAVADWGQTLSFYQLS-GKQIGK---DRALNFDPCCISYFTNGEYILLGGSDKQLSLFT-RDGVRLGTVGEQD 263 (1081)
T ss_pred CCCccceEEEEeccceeEEEEec-ceeecc---cccCCCCchhheeccCCcEEEEccCCCceEEEe-ecCeEEeeccccc
Confidence 356666666666666553 443321 112345678999999999999999999999995 4455555543 23
Q ss_pred CceeEEEeccCCCEEEEccccc
Q 021399 233 RPVNAVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 233 ~~~~~~~~~p~~~~~~~~~~~~ 254 (313)
.=+-+++.+|.++++++++-++
T Consensus 264 ~WIWtV~~~PNsQ~v~~GCqDG 285 (1081)
T KOG1538|consen 264 SWIWTVQAKPNSQYVVVGCQDG 285 (1081)
T ss_pred eeEEEEEEccCCceEEEEEccC
Confidence 4477899999999988876443
No 186
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.65 E-value=1.8e-15 Score=131.03 Aligned_cols=187 Identities=17% Similarity=0.197 Sum_probs=136.9
Q ss_pred EEccCCCEEEE--eeCCCCeEEEeCCCCc-EE-EEecC--CCCceEEEEECC-CCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399 17 KYNKDGDLLFS--CAKDHTPTVWFADNGE-RL-GTYRG--HNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFT 89 (313)
Q Consensus 17 ~fs~~g~~l~s--~s~d~~i~iw~~~~~~-~~-~~~~~--H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~~~~~~~ 89 (313)
.|..+.++.+. .+..|.|-|+++.... +. ..+.+ ....|+.+.|+| |.+.|+.++.||.|++|-+..+..-.
T Consensus 586 Gfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e- 664 (1012)
T KOG1445|consen 586 GFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE- 664 (1012)
T ss_pred ceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc-
Confidence 34555666655 4557999999987432 21 11221 234689999998 56789999999999999987543210
Q ss_pred ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC-CCEEEEeeCCC
Q 021399 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDA 168 (313)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~t~~~d~ 168 (313)
....+-..+..|..+|+++.|+|. .+.+++++.|.
T Consensus 665 --------------------------------------------~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~ 700 (1012)
T KOG1445|consen 665 --------------------------------------------NEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDS 700 (1012)
T ss_pred --------------------------------------------ccCCcceeeecccceEEEEEecchhhhHhhhhhccc
Confidence 011223345678889999999986 46788999999
Q ss_pred eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc-EEEEEec--CCceeEEEeccCCC
Q 021399 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-LIKTYVT--ERPVNAVTMSPLLD 245 (313)
Q Consensus 169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~--~~~~~~~~~~p~~~ 245 (313)
+|+|||+.+.+..+++ .+|.+.|..++|||+|..+|+.+.||+|++|+.++.+ ++++-.. ......+.|..++.
T Consensus 701 Ti~lWDl~~~~~~~~l---~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr 777 (1012)
T KOG1445|consen 701 TIELWDLANAKLYSRL---VGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGR 777 (1012)
T ss_pred eeeeeehhhhhhhhee---ccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCc
Confidence 9999999988776655 4799999999999999999999999999999998754 4444322 22345577888888
Q ss_pred EEEEcc
Q 021399 246 HVVLGG 251 (313)
Q Consensus 246 ~~~~~~ 251 (313)
++++.|
T Consensus 778 ~viv~G 783 (1012)
T KOG1445|consen 778 IVIVVG 783 (1012)
T ss_pred EEEEec
Confidence 877765
No 187
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.65 E-value=4.9e-13 Score=114.96 Aligned_cols=263 Identities=14% Similarity=0.135 Sum_probs=150.0
Q ss_pred EEEeeCCCCeEEEeCCC-Cc--EEEEecCCCCceEEEEECCCCCeEEEe-eCCCcEEEEECCC-CeEE--EEecCCCCee
Q 021399 25 LFSCAKDHTPTVWFADN-GE--RLGTYRGHNGAVWCCDVSRDSMTLITG-SADQTAKLWNVET-GAQL--FTFNFDSPAR 97 (313)
Q Consensus 25 l~s~s~d~~i~iw~~~~-~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~-s~D~~v~vWd~~~-~~~~--~~~~~~~~~~ 97 (313)
+++...|+.|++|++.+ ++ .+.++.. .+....++++|+++.|+.+ ..++.|.+|+++. ++.. ..........
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~-~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~ 83 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV-PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT 83 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec-CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence 34446789999999964 33 4455543 3556678999999987655 4689999999973 3322 2222333456
Q ss_pred EEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe-eCCCeEEEEECC
Q 021399 98 SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTE 176 (313)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~-~~d~~i~lwd~~ 176 (313)
.+.+.++++.+++.... ...+.++++..+. .....+....+ ......+.++|++++++++ ..++.|.+||+.
T Consensus 84 ~i~~~~~g~~l~v~~~~----~~~v~v~~~~~~g--~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~ 156 (330)
T PRK11028 84 HISTDHQGRFLFSASYN----ANCVSVSPLDKDG--IPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLS 156 (330)
T ss_pred EEEECCCCCEEEEEEcC----CCeEEEEEECCCC--CCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEEC
Confidence 77888877766554321 1222233322110 00111112222 2345667899999888554 567999999997
Q ss_pred CCceeeec---ccccCceeceEEEEECCCCCEEEEeeC-CCcEEEEECCC--C--cEEEEEec-C------CceeEEEec
Q 021399 177 TGKLLKES---DKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDART--L--ELIKTYVT-E------RPVNAVTMS 241 (313)
Q Consensus 177 ~~~~~~~~---~~~~~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd~~~--~--~~~~~~~~-~------~~~~~~~~~ 241 (313)
+...+... ............++|+|+|++++++.. +++|.+||++. + +.+.++.. + .....+.++
T Consensus 157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~ 236 (330)
T PRK11028 157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT 236 (330)
T ss_pred CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC
Confidence 63322210 000011234678899999999988876 89999999873 3 23333321 1 112358899
Q ss_pred cCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
|+++.++++... .+.+.+++.........+ ++.... ......++|+||||++.-
T Consensus 237 pdg~~lyv~~~~-~~~I~v~~i~~~~~~~~~--------~~~~~~-~~~p~~~~~~~dg~~l~v 290 (330)
T PRK11028 237 PDGRHLYACDRT-ASLISVFSVSEDGSVLSF--------EGHQPT-ETQPRGFNIDHSGKYLIA 290 (330)
T ss_pred CCCCEEEEecCC-CCeEEEEEEeCCCCeEEE--------eEEEec-cccCCceEECCCCCEEEE
Confidence 999998887432 233444432111111111 011110 123457899999988653
No 188
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.65 E-value=2.1e-14 Score=113.50 Aligned_cols=243 Identities=17% Similarity=0.182 Sum_probs=161.1
Q ss_pred cccccceeEEEEccCCC-----EEEEeeCCCCeEEEeCCC--CcE--EEEe-----cCCCCceEEEEECC-CCCeEEEee
Q 021399 7 KGHERPLTYLKYNKDGD-----LLFSCAKDHTPTVWFADN--GER--LGTY-----RGHNGAVWCCDVSR-DSMTLITGS 71 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~-----~l~s~s~d~~i~iw~~~~--~~~--~~~~-----~~H~~~V~~~~~~~-~~~~l~s~s 71 (313)
..|.-+++.+-|.|+.+ +|||++ ..+|+|.+.+ ++. ...+ ..|..++++..|+. +-+++.++|
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS 170 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS 170 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence 46888899999999863 566544 5789998774 221 1112 34567899999985 557899999
Q ss_pred CCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEE
Q 021399 72 ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (313)
Q Consensus 72 ~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (313)
-|-|+.|||++++..- .....+-.|..+|+.
T Consensus 171 iDTTCTiWdie~~~~~-------------------------------------------------~vkTQLIAHDKEV~D 201 (364)
T KOG0290|consen 171 IDTTCTIWDIETGVSG-------------------------------------------------TVKTQLIAHDKEVYD 201 (364)
T ss_pred ccCeEEEEEEeecccc-------------------------------------------------ceeeEEEecCcceeE
Confidence 9999999999876210 001122346677888
Q ss_pred EEEccCC-CEEEEeeCCCeEEEEECCCCceeeecccccCc-eeceEEEEECCC-CCEEEEeeCC-CcEEEEECCC-CcEE
Q 021399 152 AVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGH-KKTITSLAKAAD-GSHFLTGSLD-KSAKLWDART-LELI 226 (313)
Q Consensus 152 ~~~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~~-~~~l~s~s~d-g~i~iwd~~~-~~~~ 226 (313)
++|...+ +.|++.|.||.+|+||++.... +++...... ......++|.++ -+++|+-..| ..|.|-|+|. ..++
T Consensus 202 Iaf~~~s~~~FASvgaDGSvRmFDLR~leH-STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv 280 (364)
T KOG0290|consen 202 IAFLKGSRDVFASVGADGSVRMFDLRSLEH-STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV 280 (364)
T ss_pred EEeccCccceEEEecCCCcEEEEEeccccc-ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce
Confidence 8887644 5789999999999999986543 233332233 456778888764 4566665554 4589999987 3455
Q ss_pred EEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC-CCCeeE
Q 021399 227 KTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP-DGKRYG 304 (313)
Q Consensus 227 ~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp-dgk~~~ 304 (313)
..+. +..+++.++|.|.....+.++|+| ..+.+||....-.+ ...|+ +-... -.+.|+.|.|+| .+..+|
T Consensus 281 a~L~~H~a~VNgIaWaPhS~~hictaGDD-~qaliWDl~q~~~~-~~~dP-----ilay~-a~~EVNqi~Ws~~~~Dwia 352 (364)
T KOG0290|consen 281 ARLRNHQASVNGIAWAPHSSSHICTAGDD-CQALIWDLQQMPRE-NGEDP-----ILAYT-AGGEVNQIQWSSSQPDWIA 352 (364)
T ss_pred ehhhcCcccccceEecCCCCceeeecCCc-ceEEEEeccccccc-CCCCc-----hhhhh-ccceeeeeeecccCCCEEE
Confidence 6654 567899999999987777776655 44455554332110 01111 11111 367899999995 477899
Q ss_pred EEEEE
Q 021399 305 FLLLQ 309 (313)
Q Consensus 305 ~~~~~ 309 (313)
+|+.+
T Consensus 353 i~~~k 357 (364)
T KOG0290|consen 353 ICFGK 357 (364)
T ss_pred EEecC
Confidence 88754
No 189
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=1.5e-14 Score=116.59 Aligned_cols=201 Identities=11% Similarity=0.177 Sum_probs=137.5
Q ss_pred CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECC--CCCeEEEeeCCCcEEEEECCCCeEEEEec--CCC--Ce
Q 021399 23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLWNVETGAQLFTFN--FDS--PA 96 (313)
Q Consensus 23 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~--~~~~l~s~s~D~~v~vWd~~~~~~~~~~~--~~~--~~ 96 (313)
..++++-..|.|++||..++..+..|++|...+..+.|.. ....+.||+.||+||+||+++....-.+. ..+ +.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 3477788899999999999999999999999999998865 45689999999999999998865443222 222 33
Q ss_pred eEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceE-EEecCCCCceEEEEEccCC-CEEEEeeCCCeEEEEE
Q 021399 97 RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWD 174 (313)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-~~i~t~~~d~~i~lwd 174 (313)
.+++......+.+..+... .......+|++... .+++ .-.+.|...|+++.|+|.. +.+++|+-||.|.|+|
T Consensus 121 ~~ld~nck~~ii~~GtE~~-~s~A~v~lwDvR~~-----qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD 194 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACGTELT-RSDASVVLWDVRSE-----QQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFD 194 (376)
T ss_pred eEeeccCcCCeEEeccccc-cCceEEEEEEeccc-----cchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeee
Confidence 4444332333333332211 11122233333211 1112 2346788999999999975 6789999999999999
Q ss_pred CCCCceeeecccccCceeceEEEEECCCC-CEEEEeeCCCcEEEEECCCCcEEEEE
Q 021399 175 TETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTY 229 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (313)
++....--.+...-.|...|.++.|..++ +.|.+-+..++..+|+++.+.+...+
T Consensus 195 ~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~ 250 (376)
T KOG1188|consen 195 TKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWL 250 (376)
T ss_pred cCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcc
Confidence 87543211111112366779999998876 45899999999999999988765443
No 190
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=9.7e-14 Score=123.05 Aligned_cols=224 Identities=15% Similarity=0.107 Sum_probs=139.6
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCC---CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEE-EeeCCCcEEE
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKL 78 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d---~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~~v~v 78 (313)
++.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.. .+....+.+.+.+|+|||+.++ +.+.++...|
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 266 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGRTLAVALSRDGNSQI 266 (427)
T ss_pred ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccCCCceE
Confidence 34556777889999999999999887743 35899999888653 3344445667889999998765 6677888777
Q ss_pred EECC--CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 79 WNVE--TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 79 Wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
|.++ ++... .+..+.+......|+|
T Consensus 267 y~~d~~~~~~~-----------------------------------------------------~lt~~~~~~~~~~wSp 293 (427)
T PRK02889 267 YTVNADGSGLR-----------------------------------------------------RLTQSSGIDTEPFFSP 293 (427)
T ss_pred EEEECCCCCcE-----------------------------------------------------ECCCCCCCCcCeEEcC
Confidence 7643 21110 0011112233467999
Q ss_pred CCCEEEEeeC-CCeEEEEE--CCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC---cEEEEECCCCcEEEEEe
Q 021399 157 LNRTIISAGE-DAIVRIWD--TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYV 230 (313)
Q Consensus 157 ~~~~i~t~~~-d~~i~lwd--~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~ 230 (313)
+|+.++..+. ++...||. ...+.. ..+.. +.......+|+|||++|+..+.++ .|.+||+.+++.. .+.
T Consensus 294 DG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~---~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt 368 (427)
T PRK02889 294 DGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTF---TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALT 368 (427)
T ss_pred CCCEEEEEecCCCCcEEEEEECCCCce-EEEec---CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-Ecc
Confidence 9998876554 45555664 444432 22211 112234578999999998877654 5999999987753 333
Q ss_pred cCCceeEEEeccCCCEEEEcccccCc-eeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC
Q 021399 231 TERPVNAVTMSPLLDHVVLGGGQDAS-AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298 (313)
Q Consensus 231 ~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp 298 (313)
........+|+|++..++.+....+. .++..+. .++....+..+.+.+...+|+|
T Consensus 369 ~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-------------~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 369 DTTRDESPSFAPNGRYILYATQQGGRSVLAAVSS-------------DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred CCCCccCceECCCCCEEEEEEecCCCEEEEEEEC-------------CCCceEEeecCCCCCCCCccCC
Confidence 33334678999999998876543322 1222222 1222222334556777778877
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.63 E-value=1.9e-12 Score=111.27 Aligned_cols=237 Identities=9% Similarity=0.096 Sum_probs=143.6
Q ss_pred cceeEEEEccCCCEEEEee-CCCCeEEEeCC-CCcE--EEEecCCCCceEEEEECCCCCeEEEee-CCCcEEEEECCCCe
Q 021399 11 RPLTYLKYNKDGDLLFSCA-KDHTPTVWFAD-NGER--LGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETGA 85 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s-~d~~i~iw~~~-~~~~--~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~v~vWd~~~~~ 85 (313)
+.+..++++|++++|+.++ .++.|.+|+++ +++. +.+.. ..+....++++|+++.+++++ .++.|.+|++++..
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 4567899999999987764 58889999986 3432 22222 233456799999999888776 48999999996421
Q ss_pred ----EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCC-CCceEEEecCCCCceEEEEEccCCCE
Q 021399 86 ----QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-GGESVLILKGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 86 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (313)
.+...........+.+.|+++.+++.... ...+.++++....... .......... ......+.|+|++++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~----~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~ 188 (330)
T PRK11028 114 IPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK----EDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQY 188 (330)
T ss_pred CCCCceeeccCCCcccEeEeCCCCCEEEEeeCC----CCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCE
Confidence 22222222345566778876665543321 1223333332110000 0000001111 123457899999999
Q ss_pred EEEeeC-CCeEEEEECCC--Cc--eeeeccccc---CceeceEEEEECCCCCEEEEeeC-CCcEEEEECCCCc----EEE
Q 021399 161 IISAGE-DAIVRIWDTET--GK--LLKESDKET---GHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLE----LIK 227 (313)
Q Consensus 161 i~t~~~-d~~i~lwd~~~--~~--~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd~~~~~----~~~ 227 (313)
++++.+ ++.|.+||+.. ++ .+..+.... .+......+.++|++++++++.. ++.|.+|+++... .+.
T Consensus 189 lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~ 268 (330)
T PRK11028 189 AYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEG 268 (330)
T ss_pred EEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeE
Confidence 877765 89999999863 22 222221111 11223346889999999988864 7899999985432 233
Q ss_pred EEecCCceeEEEeccCCCEEEEcccc
Q 021399 228 TYVTERPVNAVTMSPLLDHVVLGGGQ 253 (313)
Q Consensus 228 ~~~~~~~~~~~~~~p~~~~~~~~~~~ 253 (313)
.+........++++|++..++++...
T Consensus 269 ~~~~~~~p~~~~~~~dg~~l~va~~~ 294 (330)
T PRK11028 269 HQPTETQPRGFNIDHSGKYLIAAGQK 294 (330)
T ss_pred EEeccccCCceEECCCCCEEEEEEcc
Confidence 33333345678999999999987643
No 192
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=2e-13 Score=105.52 Aligned_cols=158 Identities=11% Similarity=0.161 Sum_probs=113.8
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~ 91 (313)
.|+++-..|...-++.++.|+.++-||+++|+...+++||++.|.++.-...+..++||+.||++|+||.++++.+..+.
T Consensus 116 eINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie 195 (325)
T KOG0649|consen 116 EINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIE 195 (325)
T ss_pred ccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEec
Confidence 47788899988888888899999999999999999999999999999874444468899999999999999998876653
Q ss_pred CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCC-CCceEEEEEccCCCEEEEeeCCCeE
Q 021399 92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRTIISAGEDAIV 170 (313)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~i~t~~~d~~i 170 (313)
.-.....+ .-| ...|..++.+ +..++ ||....+
T Consensus 196 ~yk~~~~l-------------------------------------------Rp~~g~wigala~~--edWlv-CGgGp~l 229 (325)
T KOG0649|consen 196 PYKNPNLL-------------------------------------------RPDWGKWIGALAVN--EDWLV-CGGGPKL 229 (325)
T ss_pred cccChhhc-------------------------------------------CcccCceeEEEecc--CceEE-ecCCCce
Confidence 21110000 000 1112233222 23455 5556789
Q ss_pred EEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (313)
Q Consensus 171 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~ 221 (313)
.||.+++.++.+.+. ....+..+.|. .+.+++++..+.+.-|.+.
T Consensus 230 slwhLrsse~t~vfp----ipa~v~~v~F~--~d~vl~~G~g~~v~~~~l~ 274 (325)
T KOG0649|consen 230 SLWHLRSSESTCVFP----IPARVHLVDFV--DDCVLIGGEGNHVQSYTLN 274 (325)
T ss_pred eEEeccCCCceEEEe----cccceeEeeee--cceEEEeccccceeeeeec
Confidence 999999888766553 34456666665 3568888888888888774
No 193
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.63 E-value=1.4e-13 Score=108.21 Aligned_cols=154 Identities=20% Similarity=0.369 Sum_probs=107.3
Q ss_pred EEEEccCCCEEEEeeC---C-------CCeEEEeCC-CCcEEEEecC-CCCceEEEEECCCCCeEEE--eeCCCcEEEEE
Q 021399 15 YLKYNKDGDLLFSCAK---D-------HTPTVWFAD-NGERLGTYRG-HNGAVWCCDVSRDSMTLIT--GSADQTAKLWN 80 (313)
Q Consensus 15 ~~~fs~~g~~l~s~s~---d-------~~i~iw~~~-~~~~~~~~~~-H~~~V~~~~~~~~~~~l~s--~s~D~~v~vWd 80 (313)
.+.|+|+|++|+.-.. | +...+|.++ .+.....+.- ..++|.+++|+|+|+.|+. |..++.|.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 4789999987776433 2 234455442 2223333332 3457999999999987654 44678999999
Q ss_pred CCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (313)
++ ++.+..+ +...++.+.|+|.|++
T Consensus 90 ~~-~~~i~~~------------------------------------------------------~~~~~n~i~wsP~G~~ 114 (194)
T PF08662_consen 90 VK-GKKIFSF------------------------------------------------------GTQPRNTISWSPDGRF 114 (194)
T ss_pred Cc-ccEeEee------------------------------------------------------cCCCceEEEECCCCCE
Confidence 85 2222111 1235567889999999
Q ss_pred EEEeeCC---CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC------CCcEEEEECCCCcEEEEE
Q 021399 161 IISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL------DKSAKLWDARTLELIKTY 229 (313)
Q Consensus 161 i~t~~~d---~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~ 229 (313)
+++++.+ |.|.+||.++.+.+.... ...+..++|+|||.+|++++. |+.++||+.. |+.+...
T Consensus 115 l~~~g~~n~~G~l~~wd~~~~~~i~~~~-----~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 115 LVLAGFGNLNGDLEFWDVRKKKKISTFE-----HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred EEEEEccCCCcEEEEEECCCCEEeeccc-----cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 9998744 669999999877776543 235789999999999999874 7889999985 5555543
No 194
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.62 E-value=1.7e-13 Score=109.98 Aligned_cols=267 Identities=19% Similarity=0.266 Sum_probs=170.0
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-------E-----EEEecCC-CCceEEEEE-------CCCCCeEEEee
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-------R-----LGTYRGH-NGAVWCCDV-------SRDSMTLITGS 71 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-------~-----~~~~~~H-~~~V~~~~~-------~~~~~~l~s~s 71 (313)
....+.|||||..|++-+.|..+++|++...- . .-+++=- ..-|...+| .|+..++++.+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 34568999999999999999999999765210 0 0111111 123555555 36778999999
Q ss_pred CCCcEEEEECCCCeEEEEecC-C-----CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec--
Q 021399 72 ADQTAKLWNVETGAQLFTFNF-D-----SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-- 143 (313)
Q Consensus 72 ~D~~v~vWd~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 143 (313)
+|.-|++||..+++....+.. + ....++.|++++..+.+.-...+. +-++.+. .....++...
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcir------vFdt~Rp---Gr~c~vy~t~~~ 201 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIR------VFDTSRP---GRDCPVYTTVTK 201 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEE------EeeccCC---CCCCcchhhhhc
Confidence 999999999999988766532 1 356788899866554443322222 1111110 0111122111
Q ss_pred ---CCCCceEEEEEccCCC-EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC-CCcEEEE
Q 021399 144 ---GPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLW 218 (313)
Q Consensus 144 ---~~~~~i~~~~~~~~~~-~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iw 218 (313)
+-.+-|.+.+++|... .++.++....+-|+.-..+.++.... +|.+.|+.+.|.++|+.|.+|.. |-.|..|
T Consensus 202 ~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg---gh~gGvThL~~~edGn~lfsGaRk~dkIl~W 278 (406)
T KOG2919|consen 202 GKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG---GHGGGVTHLQWCEDGNKLFSGARKDDKILCW 278 (406)
T ss_pred ccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec---ccCCCeeeEEeccCcCeecccccCCCeEEEE
Confidence 2245677889999865 78888888887777766666665543 79999999999999999999986 7889999
Q ss_pred ECCC-CcEEEEEecCC--ceeEEE--eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhh-hhhhcccccccccee
Q 021399 219 DART-LELIKTYVTER--PVNAVT--MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEIGGVKGHFGPIN 292 (313)
Q Consensus 219 d~~~-~~~~~~~~~~~--~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~ 292 (313)
|+|. ..++..+..+. .-..+- ..|.++.++ +|+ ..+.| +.||... +..+..+..|+..|+
T Consensus 279 DiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~La-sG~-tdG~V------------~vwdlk~~gn~~sv~~~~sd~vN 344 (406)
T KOG2919|consen 279 DIRYSRDPVYALERHVGDTNQRILFDLDPKGEILA-SGD-TDGSV------------RVWDLKDLGNEVSVTGNYSDTVN 344 (406)
T ss_pred eehhccchhhhhhhhccCccceEEEecCCCCceee-ccC-CCccE------------EEEecCCCCCccccccccccccc
Confidence 9986 33444432111 011223 346555433 333 33344 4455433 444556677899999
Q ss_pred EEEECCCCCeeE
Q 021399 293 ALAFNPDGKRYG 304 (313)
Q Consensus 293 ~~~fspdgk~~~ 304 (313)
.++++|-=-++|
T Consensus 345 gvslnP~mpila 356 (406)
T KOG2919|consen 345 GVSLNPIMPILA 356 (406)
T ss_pred ceecCcccceee
Confidence 999999743333
No 195
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=3.7e-13 Score=119.82 Aligned_cols=191 Identities=7% Similarity=0.021 Sum_probs=130.8
Q ss_pred cccccccccceeEEEEccCCCEEEEeeC---CCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeE-EEeeCCCc--E
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAK---DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQT--A 76 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~---d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~--v 76 (313)
++.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|+|||+.+ ++.+.++. |
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 272 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDI 272 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceE
Confidence 4567778889999999999999988764 467999999888653 455667778889999999865 46666665 5
Q ss_pred EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
.+||+.+++.... ..+.+......|+|
T Consensus 273 y~~d~~~~~~~~L-----------------------------------------------------t~~~~~~~~~~~sp 299 (435)
T PRK05137 273 YTMDLRSGTTTRL-----------------------------------------------------TDSPAIDTSPSYSP 299 (435)
T ss_pred EEEECCCCceEEc-----------------------------------------------------cCCCCccCceeEcC
Confidence 5557665533210 00111223467899
Q ss_pred CCCEEEEeeC-C--CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC---CcEEEEECCCCcEEEEEe
Q 021399 157 LNRTIISAGE-D--AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV 230 (313)
Q Consensus 157 ~~~~i~t~~~-d--~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~ 230 (313)
+++.++..+. + ..|++||+..+.. +.+.. +...+....|+|||+.|+..+.+ ..|.+||+.++.. +.+.
T Consensus 300 DG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~---~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt 374 (435)
T PRK05137 300 DGSQIVFESDRSGSPQLYVMNADGSNP-RRISF---GGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT 374 (435)
T ss_pred CCCEEEEEECCCCCCeEEEEECCCCCe-EEeec---CCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc
Confidence 9988887663 2 3688889876543 33321 23445667899999999877653 3588889865543 4444
Q ss_pred cCCceeEEEeccCCCEEEEccc
Q 021399 231 TERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 231 ~~~~~~~~~~~p~~~~~~~~~~ 252 (313)
........+|+|+++.++.+..
T Consensus 375 ~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 375 SGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CCCCCCCCeECCCCCEEEEEEc
Confidence 4445677899999998877643
No 196
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=4.6e-14 Score=125.22 Aligned_cols=201 Identities=15% Similarity=0.101 Sum_probs=128.1
Q ss_pred CCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC---CcEEEEECCCCeEEEEecCCCCeeEEEeecCCeE
Q 021399 31 DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKL 107 (313)
Q Consensus 31 d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (313)
+..|.+||.+... ...+..|...+.+..|+|||+.++..+.+ ..|++||+.+++......
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~---------------- 245 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVAS---------------- 245 (429)
T ss_pred eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEec----------------
Confidence 5789999976544 55677888899999999999988887654 469999988764321100
Q ss_pred EEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee-CCCeEEE--EECCCCceeeec
Q 021399 108 AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRI--WDTETGKLLKES 184 (313)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~-~d~~i~l--wd~~~~~~~~~~ 184 (313)
+.++ .....|+|+++.|+.+. .++.+.| ||+.++.. ..+
T Consensus 246 ----------------------------------~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~l 287 (429)
T PRK01742 246 ----------------------------------FRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQL 287 (429)
T ss_pred ----------------------------------CCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eee
Confidence 0111 12467999999888764 5776554 56665543 333
Q ss_pred ccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCC-cEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399 185 DKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTL-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262 (313)
Q Consensus 185 ~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (313)
. .+...+.+.+|+|||+.|+..+ .+|...||+++.. .....+.... ...+|+|+++.+++++. + .+..+|
T Consensus 288 t---~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~-~--~i~~~D 359 (429)
T PRK01742 288 T---SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING-D--NVVKQD 359 (429)
T ss_pred c---cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC-C--CEEEEE
Confidence 2 3556678899999999877655 5788888876432 2222222222 45789999998877654 2 133344
Q ss_pred cCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
...+.... + ...+ .....+|+|||+.++|...
T Consensus 360 l~~g~~~~-l-----------t~~~--~~~~~~~sPdG~~i~~~s~ 391 (429)
T PRK01742 360 LTSGSTEV-L-----------SSTF--LDESPSISPNGIMIIYSST 391 (429)
T ss_pred CCCCCeEE-e-----------cCCC--CCCCceECCCCCEEEEEEc
Confidence 43332211 0 0111 2346789999999988654
No 197
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.61 E-value=1.1e-13 Score=123.08 Aligned_cols=257 Identities=14% Similarity=0.101 Sum_probs=162.6
Q ss_pred cccccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcE--EEE----ecCCCCceEEEEECCC--CCeEEEeeCC
Q 021399 3 PILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGER--LGT----YRGHNGAVWCCDVSRD--SMTLITGSAD 73 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~--~~~----~~~H~~~V~~~~~~~~--~~~l~s~s~D 73 (313)
|-....-..+|.|+.|+|.. .+++.|..+|.|-+||+..+.. ... ...|..+|+.+.|-.+ +.-|+|+|.|
T Consensus 235 Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD 314 (555)
T KOG1587|consen 235 PELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD 314 (555)
T ss_pred ceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecC
Confidence 34344445679999999975 5667777899999999987654 222 2358889999998643 3569999999
Q ss_pred CcEEEEECCCCeE-EEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEE
Q 021399 74 QTAKLWNVETGAQ-LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152 (313)
Q Consensus 74 ~~v~vWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (313)
|.|..|+++.-.. ......... .+ .... ....-.+..+
T Consensus 315 G~i~~W~~~~l~~P~e~~~~~~~--------------------------~~-------~~~~--------~~~~~~~t~~ 353 (555)
T KOG1587|consen 315 GSICSWDTDMLSLPVEGLLLESK--------------------------KH-------KGQQ--------SSKAVGATSL 353 (555)
T ss_pred CcEeeeeccccccchhhcccccc--------------------------cc-------cccc--------cccccceeeE
Confidence 9999997653211 000000000 00 0000 0001134455
Q ss_pred EEccCC-CEEEEeeCCCeEEEEECCCCce-e----eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC-CCcE
Q 021399 153 VWGPLN-RTIISAGEDAIVRIWDTETGKL-L----KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR-TLEL 225 (313)
Q Consensus 153 ~~~~~~-~~i~t~~~d~~i~lwd~~~~~~-~----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~-~~~~ 225 (313)
.|.+.. ..|+.|+++|.|.--+....+. . ........|.+.|+++.++|-+..++..+.|-+++||... ...+
T Consensus 354 ~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~P 433 (555)
T KOG1587|consen 354 KFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASP 433 (555)
T ss_pred eeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCc
Confidence 565443 4688899999988744332211 1 1122334688999999999987776666669999999887 5566
Q ss_pred EEEEec-CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399 226 IKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 226 ~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~ 304 (313)
+..+.. ...+.+++|+|....+++++..++ .+.+||.+. ....++...+-+..+.+.+.|+++|+.+|
T Consensus 434 l~~~~~~~~~v~~vaWSptrpavF~~~d~~G-~l~iWDLl~----------~~~~Pv~s~~~~~~~l~~~~~s~~g~~la 502 (555)
T KOG1587|consen 434 LLSLDSSPDYVTDVAWSPTRPAVFATVDGDG-NLDIWDLLQ----------DDEEPVLSQKVCSPALTRVRWSPNGKLLA 502 (555)
T ss_pred chhhhhccceeeeeEEcCcCceEEEEEcCCC-ceehhhhhc----------cccCCcccccccccccceeecCCCCcEEE
Confidence 665543 334899999999998887765443 333344322 12223333333466778889999999988
Q ss_pred EEEEEEe
Q 021399 305 FLLLQIN 311 (313)
Q Consensus 305 ~~~~~~~ 311 (313)
.=++.++
T Consensus 503 vGd~~G~ 509 (555)
T KOG1587|consen 503 VGDANGT 509 (555)
T ss_pred EecCCCc
Confidence 7666554
No 198
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.61 E-value=3.9e-13 Score=108.23 Aligned_cols=276 Identities=17% Similarity=0.239 Sum_probs=178.8
Q ss_pred eeEEEEccCCCEEEE-eeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 13 LTYLKYNKDGDLLFS-CAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 13 v~~~~fs~~g~~l~s-~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
|.-+.|..|..+++. ...|+.|.+|++...+-...+..-...+.+++|||||+ .|.+..-|-.|.+|++.+.+.....
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~ 130 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP 130 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec
Confidence 445667767665554 46788999999998887777777788899999999995 6677778999999999887765544
Q ss_pred cCCCCeeEEEeecCCeEEEEECCC----ceecc--------cc-----ceeeeeeeCCCCCCCceEEEecC---------
Q 021399 91 NFDSPARSVDFAVGDKLAVITTDP----FMELN--------SA-----IHVKRIARDPADQGGESVLILKG--------- 144 (313)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--------~~-----~~~~~~~~~~~~~~~~~~~~~~~--------- 144 (313)
-.......++|.+++++++..+.. +.++. .. ...-.+.+.+ .+..+.+++.
T Consensus 131 ~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP---dg~~laVwd~~Leykv~aY 207 (447)
T KOG4497|consen 131 HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP---DGNWLAVWDNVLEYKVYAY 207 (447)
T ss_pred ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC---CCcEEEEecchhhheeeee
Confidence 334455778899998888776431 11100 00 0011111111 1222222221
Q ss_pred CC-CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccc---------------------------------cC-
Q 021399 145 PQ-GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE---------------------------------TG- 189 (313)
Q Consensus 145 ~~-~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~---------------------------------~~- 189 (313)
+. -.+..+.|+|.+++++.|+.|+.+|+-+--+-+++.++... ..
T Consensus 208 e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~ 287 (447)
T KOG4497|consen 208 ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAH 287 (447)
T ss_pred eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccC
Confidence 11 24667899999999999999999988653332222111100 00
Q ss_pred -----------------------------ceeceEEEEECCCCCEEEEeeCC--CcEEEEECCCCcEEEEEecCCceeEE
Q 021399 190 -----------------------------HKKTITSLAKAADGSHFLTGSLD--KSAKLWDARTLELIKTYVTERPVNAV 238 (313)
Q Consensus 190 -----------------------------h~~~v~~~~~s~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~~~~~~ 238 (313)
-...+-.++|++|..++++-... +.+-+||++..+....+....++++.
T Consensus 288 ~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf 367 (447)
T KOG4497|consen 288 IWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAF 367 (447)
T ss_pred ccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEE
Confidence 01235668899999988886643 56889999988887777778899999
Q ss_pred EeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
.|+|....++++.|.. ...+|-+.-...++.. +-.-.|.++.|+.+|.-++++
T Consensus 368 ~WdP~~prL~vctg~s--------------rLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g~~i~l~ 420 (447)
T KOG4497|consen 368 EWDPGRPRLVVCTGKS--------------RLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPGEFIVLC 420 (447)
T ss_pred EeCCCCceEEEEcCCc--------------eEEEEcCCCceEEecC-CCCceeeeEEecCCCcEEEEE
Confidence 9999999888765432 1334443222222221 123588999999998876554
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=7.8e-13 Score=107.93 Aligned_cols=229 Identities=12% Similarity=0.121 Sum_probs=153.6
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC--CcEEEEECCCCeEE
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD--QTAKLWNVETGAQL 87 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D--~~v~vWd~~~~~~~ 87 (313)
...+....|..+...|..|+.||. +++..++-........-.-.|--.-|+.+ +++-.+.+ +.+++.+...+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCceE
Confidence 345778889999999999999998 88887765542222222223444445544 55555544 45999999988889
Q ss_pred EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe--e
Q 021399 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA--G 165 (313)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~--~ 165 (313)
+.+.+..++.++.+.-...+++... .+.++++....... .+.....+...+..+..++.+.+++-= .
T Consensus 82 Ce~~fpt~IL~VrmNr~RLvV~Lee--------~IyIydI~~MklLh---TI~t~~~n~~gl~AlS~n~~n~ylAyp~s~ 150 (391)
T KOG2110|consen 82 CEIFFPTSILAVRMNRKRLVVCLEE--------SIYIYDIKDMKLLH---TIETTPPNPKGLCALSPNNANCYLAYPGST 150 (391)
T ss_pred EEEecCCceEEEEEccceEEEEEcc--------cEEEEecccceeeh---hhhccCCCccceEeeccCCCCceEEecCCC
Confidence 9888888888887765555544322 23333332211000 000111122223333444444566542 2
Q ss_pred CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCc-EEEEECCCCcEEEEEecC---CceeEEEec
Q 021399 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS-AKLWDARTLELIKTYVTE---RPVNAVTMS 241 (313)
Q Consensus 166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~---~~~~~~~~~ 241 (313)
..|.|.|||..+-+....+. .|++.+-+++|+++|.+|||+|..|+ ||++.+.+++.+.++... ..+.+++|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~---aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTIN---AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred CCceEEEEEcccceeeeEEE---ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 46889999998766665554 79999999999999999999999998 689999999999998653 357889999
Q ss_pred cCCCEEEEcccccC
Q 021399 242 PLLDHVVLGGGQDA 255 (313)
Q Consensus 242 p~~~~~~~~~~~~~ 255 (313)
|+++.+.+++..+.
T Consensus 228 ~ds~~L~~sS~TeT 241 (391)
T KOG2110|consen 228 PDSQFLAASSNTET 241 (391)
T ss_pred CCCCeEEEecCCCe
Confidence 99997776665444
No 200
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=7.5e-13 Score=117.87 Aligned_cols=206 Identities=15% Similarity=0.090 Sum_probs=131.5
Q ss_pred CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeC---CCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEE
Q 021399 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108 (313)
Q Consensus 32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~---D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (313)
..|.+||.+ +.....+..|...+.+.+|+|||+.++..+. +..|.+||+.+++.....
T Consensus 182 ~~l~~~d~d-g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~------------------ 242 (435)
T PRK05137 182 KRLAIMDQD-GANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVG------------------ 242 (435)
T ss_pred eEEEEECCC-CCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEee------------------
Confidence 467788864 4445567788889999999999998776653 468999998876532110
Q ss_pred EEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE-EeeCCC--eEEEEECCCCceeeecc
Q 021399 109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDA--IVRIWDTETGKLLKESD 185 (313)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-t~~~d~--~i~lwd~~~~~~~~~~~ 185 (313)
...+.+....|+|+|+.++ +.+.++ .|++||+.++.. +.+.
T Consensus 243 -----------------------------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt 286 (435)
T PRK05137 243 -----------------------------------NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLT 286 (435)
T ss_pred -----------------------------------cCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEcc
Confidence 0112234567899998775 444444 477889887654 3332
Q ss_pred cccCceeceEEEEECCCCCEEEEeeC-CC--cEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399 186 KETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262 (313)
Q Consensus 186 ~~~~h~~~v~~~~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (313)
.+........|+|||+.|+..+. +| .|.+||+.+++..+............|+|+++.++......+
T Consensus 287 ---~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~------- 356 (435)
T PRK05137 287 ---DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGG------- 356 (435)
T ss_pred ---CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCC-------
Confidence 24445667899999999887764 33 688889887665433333444567889999999877543221
Q ss_pred cCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
.+.+.++|...+.. ..+ .....+...+|+|||+.++|...
T Consensus 357 ----~~~i~~~d~~~~~~-~~l-t~~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 357 ----QFSIGVMKPDGSGE-RIL-TSGFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred ----ceEEEEEECCCCce-Eec-cCCCCCCCCeECCCCCEEEEEEc
Confidence 12233333221111 111 11234677899999999998754
No 201
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.59 E-value=3.3e-15 Score=132.94 Aligned_cols=227 Identities=19% Similarity=0.286 Sum_probs=147.9
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
.++||++.++.++.+.+..+++++|.|..|++|.+.++.++..+.+|+++|++++|+|- .+.+.||++++||.+-.
T Consensus 227 s~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~----~sss~dgt~~~wd~r~~ 302 (1113)
T KOG0644|consen 227 SCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPR----ASSSDDGTCRIWDARLE 302 (1113)
T ss_pred cCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCcc----ccCCCCCceEecccccc
Confidence 47899999999999999999999999999999999999999999999999999999995 37789999999998721
Q ss_pred eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC-CCEEEE
Q 021399 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIIS 163 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~t 163 (313)
..+... . -..+..++.++.......+. ......++.. ...-....+..+...+.-+..+.+ ..+.++
T Consensus 303 ~~~y~p---r---p~~~~~~~~~~s~~~~~~~~-----~f~Tgs~d~e-a~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ 370 (1113)
T KOG0644|consen 303 PRIYVP---R---PLKFTEKDLVDSILFENNGD-----RFLTGSRDGE-ARNHEFEQLAWRSNLLIFVTRSSDLSSIVVT 370 (1113)
T ss_pred ccccCC---C---CCCcccccceeeeecccccc-----ccccccCCcc-cccchhhHhhhhccceEEEecccccccccee
Confidence 111110 0 01111222222221111000 0000000000 000000011122222222222211 234566
Q ss_pred eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCE-EEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEec
Q 021399 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMS 241 (313)
Q Consensus 164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 241 (313)
+=.+..+.+|++.++.+.... .+|...+..+.++|-... ..+++.||...|||+-.+.+++.+. ....+....|+
T Consensus 371 ar~~~~~~vwnl~~g~l~H~l---~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFS 447 (1113)
T KOG0644|consen 371 ARNDHRLCVWNLYTGQLLHNL---MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFS 447 (1113)
T ss_pred eeeeeEeeeeecccchhhhhh---cccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccC
Confidence 667888999999998765433 478899999999997665 4589999999999999998887775 23456667788
Q ss_pred cCCCEEEEc
Q 021399 242 PLLDHVVLG 250 (313)
Q Consensus 242 p~~~~~~~~ 250 (313)
++|.+++++
T Consensus 448 qdgts~~ls 456 (1113)
T KOG0644|consen 448 QDGTSIALS 456 (1113)
T ss_pred CCCceEecC
Confidence 887766553
No 202
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=8e-13 Score=105.82 Aligned_cols=233 Identities=17% Similarity=0.229 Sum_probs=146.7
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVE 82 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~ 82 (313)
++|.+|..+|.+++||+||++|+|+|.|-.+++||+..|.+++.++- ..+|+.+.|+|.++ .++..=.+..-.+-++.
T Consensus 59 r~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf-~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s 137 (405)
T KOG1273|consen 59 RMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF-DSPVWGAQWHPRKRNKCVATIMEESPVVIDFS 137 (405)
T ss_pred hhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc-cCccceeeeccccCCeEEEEEecCCcEEEEec
Confidence 47889999999999999999999999999999999999999888874 78999999999654 33333334334444444
Q ss_pred CCeEEEEec-CCC----CeeEEEeecCCeEEEEECCC-ceeccccceeeeeeeCCCCCCCceEEEecCCC-CceEEEEEc
Q 021399 83 TGAQLFTFN-FDS----PARSVDFAVGDKLAVITTDP-FMELNSAIHVKRIARDPADQGGESVLILKGPQ-GRINRAVWG 155 (313)
Q Consensus 83 ~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~ 155 (313)
.+....... ... ......|...++.+...+.+ .+.+ .+. .+.+.+..++-.. ..|.++-++
T Consensus 138 ~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv------~~a------~t~e~vas~rits~~~IK~I~~s 205 (405)
T KOG1273|consen 138 DPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLV------YDA------ETLECVASFRITSVQAIKQIIVS 205 (405)
T ss_pred CCceeeccCCCccccccccccccccCCCCEEEEecCcceEEE------Eec------chheeeeeeeechheeeeEEEEe
Confidence 332211111 000 01111133333444333322 1111 100 0011122222112 456778888
Q ss_pred cCCCEEEEeeCCCeEEEEECCCCcee-eecccccCc-------eeceEEEEECCCCCEEEEeeC-CCcEEEEECCCCcEE
Q 021399 156 PLNRTIISAGEDAIVRIWDTETGKLL-KESDKETGH-------KKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELI 226 (313)
Q Consensus 156 ~~~~~i~t~~~d~~i~lwd~~~~~~~-~~~~~~~~h-------~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd~~~~~~~ 226 (313)
..|+.|+.-+.|..||.++.+.--.. +.......| +-.-.+++|+.+|.++..++. -..++||...+|.++
T Consensus 206 ~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV 285 (405)
T KOG1273|consen 206 RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLV 285 (405)
T ss_pred ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCccee
Confidence 89999999999999999997631111 000100011 223457789999999888874 346899999999999
Q ss_pred EEEecC--CceeEEEeccCCCEEEE
Q 021399 227 KTYVTE--RPVNAVTMSPLLDHVVL 249 (313)
Q Consensus 227 ~~~~~~--~~~~~~~~~p~~~~~~~ 249 (313)
+.+... .....+.|+|....++.
T Consensus 286 KILhG~kgE~l~DV~whp~rp~i~s 310 (405)
T KOG1273|consen 286 KILHGTKGEELLDVNWHPVRPIIAS 310 (405)
T ss_pred eeecCCchhheeecccccceeeeee
Confidence 888653 34677889998776554
No 203
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.59 E-value=6.9e-15 Score=122.98 Aligned_cols=216 Identities=17% Similarity=0.230 Sum_probs=159.1
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~ 91 (313)
+.+.+.|+.+|.+|+-|+.-|.+-.+|..++.+...+.- ...|..+.|-.+.++|| ..+...+.|||-. |..+..+.
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~A-VAQK~y~yvYD~~-GtElHClk 207 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFA-VAQKKYVYVYDNN-GTELHCLK 207 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHH-hhhhceEEEecCC-CcEEeehh
Confidence 457899999999999999999999999999988766653 34677788876666555 4677889999954 33444343
Q ss_pred CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEE
Q 021399 92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 171 (313)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~ 171 (313)
-...+..+.|.|--.+++..++.-+ ....++. .+..+..+....+++..+.-+|-...+-+|...|+|.
T Consensus 208 ~~~~v~rLeFLPyHfLL~~~~~~G~-----L~Y~DVS------~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVS 276 (545)
T KOG1272|consen 208 RHIRVARLEFLPYHFLLVAASEAGF-----LKYQDVS------TGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVS 276 (545)
T ss_pred hcCchhhhcccchhheeeecccCCc-----eEEEeec------hhhhhHHHHccCCccchhhcCCccceEEEcCCCceEE
Confidence 4445666677776555555443211 2222222 2334444444456666667778777788999999999
Q ss_pred EEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCC
Q 021399 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL 244 (313)
Q Consensus 172 lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~ 244 (313)
+|...+..++-.+. .|.+.|.++++.++|.++||.+.|..++|||++....+.++..+.+...+++|--+
T Consensus 277 lWSP~skePLvKiL---cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 277 LWSPNSKEPLVKIL---CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG 346 (545)
T ss_pred ecCCCCcchHHHHH---hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc
Confidence 99999887765442 69999999999999999999999999999999998877777667778888887544
No 204
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.59 E-value=3e-14 Score=111.18 Aligned_cols=161 Identities=16% Similarity=0.220 Sum_probs=118.6
Q ss_pred cccceeEEEEccC-C--CEEEEeeCCCCeEEEeCCCCcE----------EEEecCCCCceEEEEECCCCCeEEEeeCCCc
Q 021399 9 HERPLTYLKYNKD-G--DLLFSCAKDHTPTVWFADNGER----------LGTYRGHNGAVWCCDVSRDSMTLITGSADQT 75 (313)
Q Consensus 9 h~~~v~~~~fs~~-g--~~l~s~s~d~~i~iw~~~~~~~----------~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~ 75 (313)
-.+.+.|..+..+ + -+|+.|-++|.+.+||+.++.. ......|+++|.++.+.+.-..=++|+.+..
T Consensus 149 Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dk 228 (323)
T KOG0322|consen 149 KLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDK 228 (323)
T ss_pred ccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCcccc
Confidence 3456666664432 3 2667788899999999999843 3344689999999999876566678888888
Q ss_pred EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399 76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (313)
Q Consensus 76 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (313)
+..|++.......... . ...-.+..+..+.+-
T Consensus 229 l~~~Sl~~s~gslq~~--------------------------------------------~----e~~lknpGv~gvrIR 260 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIR--------------------------------------------K----EITLKNPGVSGVRIR 260 (323)
T ss_pred ceeeeeccccCccccc--------------------------------------------c----eEEecCCCccceEEc
Confidence 8899875421100000 0 000011234556677
Q ss_pred cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (313)
Q Consensus 156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~ 220 (313)
|+++.+||+|.|++||+|.-++..++..+. -|+..|++++|+|+...+|++|.|++|.+|++
T Consensus 261 pD~KIlATAGWD~RiRVyswrtl~pLAVLk---yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 261 PDGKILATAGWDHRIRVYSWRTLNPLAVLK---YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred cCCcEEeecccCCcEEEEEeccCCchhhhh---hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 889999999999999999998887765544 48899999999999999999999999999986
No 205
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.4e-14 Score=122.14 Aligned_cols=168 Identities=23% Similarity=0.360 Sum_probs=120.8
Q ss_pred EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceecccccee
Q 021399 45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124 (313)
Q Consensus 45 ~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (313)
.+++.||++-|+|++|+.+|.+|+|||.|-.+.|||+...+.+..+
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI---------------------------------- 88 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI---------------------------------- 88 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee----------------------------------
Confidence 4578999999999999999999999999999999998755443222
Q ss_pred eeeeeCCCCCCCceEEEecCCCCceEEEEEccC--CCEEEEeeCCCeEEEEECCCCce-------eeecccccCceeceE
Q 021399 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKL-------LKESDKETGHKKTIT 195 (313)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~i~t~~~d~~i~lwd~~~~~~-------~~~~~~~~~h~~~v~ 195 (313)
..+|.+.|.++.|-|. .+.+++|..|..|+|+|+...+. .-+...-..|...|.
T Consensus 89 -----------------~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVK 151 (758)
T KOG1310|consen 89 -----------------STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVK 151 (758)
T ss_pred -----------------ecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhh
Confidence 2356677777777664 46789999999999999875221 111111235778888
Q ss_pred EEEECCCC-CEEEEeeCCCcEEEEECCCCc-E------EEEEe--cC--CceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399 196 SLAKAADG-SHFLTGSLDKSAKLWDARTLE-L------IKTYV--TE--RPVNAVTMSPLLDHVVLGGGQDASAVTTTDH 263 (313)
Q Consensus 196 ~~~~s~~~-~~l~s~s~dg~i~iwd~~~~~-~------~~~~~--~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (313)
.++..|++ +.+-+++.||+|+-+|++... | ...+. .. -...++.++|...+.++.|+++ -+..++|.
T Consensus 152 ria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsd-pfarLYD~ 230 (758)
T KOG1310|consen 152 RIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSD-PFARLYDR 230 (758)
T ss_pred heecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCC-chhhhhhh
Confidence 88888988 779999999999999998621 1 11110 01 1367899999988777766654 34556674
Q ss_pred C
Q 021399 264 R 264 (313)
Q Consensus 264 ~ 264 (313)
|
T Consensus 231 R 231 (758)
T KOG1310|consen 231 R 231 (758)
T ss_pred h
Confidence 3
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=3.6e-13 Score=111.56 Aligned_cols=138 Identities=18% Similarity=0.300 Sum_probs=96.9
Q ss_pred EEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE
Q 021399 150 NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (313)
Q Consensus 150 ~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (313)
..+++++++..+++++.||++|+|+..+...+... ..|...|.++.|+|||++|++-+.| ..++|+.+++.++...
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e---~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE---IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh---HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 56889999999999999999999995544433322 3588999999999999999999999 8999999988332221
Q ss_pred ec-------------------------------------------------------CCceeEEEeccCCCEEEEccccc
Q 021399 230 VT-------------------------------------------------------ERPVNAVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 230 ~~-------------------------------------------------------~~~~~~~~~~p~~~~~~~~~~~~ 254 (313)
.. ...+.+++.+++|..++++.-+
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d- 302 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD- 302 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC-
Confidence 10 1134566667777766665442
Q ss_pred CceeEeeccCCCceeeeeeehhhhhh-hccccccccceeEEEECCCCCeeEE
Q 021399 255 ASAVTTTDHRAGKFEAKFFDKILQEE-IGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
+.|.+++. .+.+. ....++|...|+.++|+||.++++-
T Consensus 303 -GsVai~~~------------~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 303 -GSVAIYDA------------KSLQRLQYVKEAHLGFVTGLTFSPDSRYLAS 341 (398)
T ss_pred -CcEEEEEe------------ceeeeeEeehhhheeeeeeEEEcCCcCcccc
Confidence 22322222 11111 1234589999999999999998765
No 207
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=1.1e-11 Score=99.46 Aligned_cols=209 Identities=16% Similarity=0.250 Sum_probs=133.3
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeE-EEeeCC------CcEEEEECCCC
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSAD------QTAKLWNVETG 84 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D------~~v~vWd~~~~ 84 (313)
....++|+.|-.-++.|-.+|- |||+.+.-+...+-+-+.+.+.-+..-...+++ +.||.+ ..|.|||=...
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gf-riyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~ 85 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGF-RIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKE 85 (346)
T ss_pred ceeEEEEccCCceEEEEecCce-EEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccC
Confidence 3456999999988887777665 999988644322222222221111111112333 344443 57999996556
Q ss_pred eEEEEecCCCCeeEEEeecCCeEEEEECCCc-eeccccc---eeeeeeeCC------------------CCCCC------
Q 021399 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPF-MELNSAI---HVKRIARDP------------------ADQGG------ 136 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~------------------~~~~~------ 136 (313)
.++..+.+..++..+.+..+..+++....-+ +...... +.-+....+ ....+
T Consensus 86 ~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~d 165 (346)
T KOG2111|consen 86 RCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVD 165 (346)
T ss_pred cEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEE
Confidence 6777777778888777765544333321100 0000000 000000000 00000
Q ss_pred ------ceEEEecCCCCceEEEEEccCCCEEEEeeCCCe-EEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEe
Q 021399 137 ------ESVLILKGPQGRINRAVWGPLNRTIISAGEDAI-VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 209 (313)
Q Consensus 137 ------~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~-i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 209 (313)
.....+..|.+.|.++.++.+|..+||+|..|+ |||||..++.+++++.... ....|.+++|||+..+|+.+
T Consensus 166 L~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~-d~A~iy~iaFSp~~s~Lavs 244 (346)
T KOG2111|consen 166 LASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV-DRADIYCIAFSPNSSWLAVS 244 (346)
T ss_pred hhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC-chheEEEEEeCCCccEEEEE
Confidence 122456789999999999999999999999987 7999999999998875433 35789999999999999999
Q ss_pred eCCCcEEEEECCC
Q 021399 210 SLDKSAKLWDART 222 (313)
Q Consensus 210 s~dg~i~iwd~~~ 222 (313)
|..|++.|+.++.
T Consensus 245 SdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 245 SDKGTLHIFSLRD 257 (346)
T ss_pred cCCCeEEEEEeec
Confidence 9999999998775
No 208
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=5.5e-14 Score=113.45 Aligned_cols=215 Identities=16% Similarity=0.190 Sum_probs=128.9
Q ss_pred cccccccceeEEEEcc--CCCEEEEeeCCCCeEEEeCCCCcEEEE-----------------------------------
Q 021399 5 LMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNGERLGT----------------------------------- 47 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~--~g~~l~s~s~d~~i~iw~~~~~~~~~~----------------------------------- 47 (313)
.+++|...+..++|.. ....+.+|+.||+||+||+........
T Consensus 65 ~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~ 144 (376)
T KOG1188|consen 65 EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDAS 144 (376)
T ss_pred eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceE
Confidence 4567888888889976 467899999999999999775321100
Q ss_pred ----------------ecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECCCCe----EEEEecCCCCeeEEEeecCC-
Q 021399 48 ----------------YRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGA----QLFTFNFDSPARSVDFAVGD- 105 (313)
Q Consensus 48 ----------------~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~~~----~~~~~~~~~~~~~~~~~~~~- 105 (313)
++.|...|+++.|+|.+ ++|+|||.||.|.++|++... ...+++....+..+.|.-..
T Consensus 145 v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~y 224 (376)
T KOG1188|consen 145 VVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKY 224 (376)
T ss_pred EEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCc
Confidence 14799999999999964 699999999999999986543 34556677778888887544
Q ss_pred -eEEEEECCCceeccccceeeeeeeC-CCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC-CCeEEEEEC---CCCc
Q 021399 106 -KLAVITTDPFMELNSAIHVKRIARD-PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDT---ETGK 179 (313)
Q Consensus 106 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~-d~~i~lwd~---~~~~ 179 (313)
++.+.+....+..+...+.....+- ..+....-.+ -+.....+....-..+...++.++. -++..++-+ .++.
T Consensus 225 krI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r-~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~ 303 (376)
T KOG1188|consen 225 KRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR-KEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS 303 (376)
T ss_pred ceEEEEEccCceeEEEccCCChhhcccCccchhhhHH-hhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccccc
Confidence 5555544332222111110000000 0000000000 0000001111111122344555544 555555543 3343
Q ss_pred eeeecccc-cCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399 180 LLKESDKE-TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (313)
Q Consensus 180 ~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~ 220 (313)
........ -+|...|+++.|...+.++.||+.||.+.+|..
T Consensus 304 ~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 304 LLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 33333222 347788999999999999999999999999975
No 209
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=2e-12 Score=118.27 Aligned_cols=270 Identities=18% Similarity=0.233 Sum_probs=157.2
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCC---CceEEEEEC--CCCCeEEEeeCCCcEEEEEC-CC-
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN---GAVWCCDVS--RDSMTLITGSADQTAKLWNV-ET- 83 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~---~~V~~~~~~--~~~~~l~s~s~D~~v~vWd~-~~- 83 (313)
++...+.|+|-.+.++++...-.|+|||.+.++.+..|..+. ..|..+.+- .|..++++|+.||.||||+- ..
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 355678999999999999888899999999999988777654 468887763 24458999999999999974 22
Q ss_pred ---CeEEEEec--------CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec-CCCCceEE
Q 021399 84 ---GAQLFTFN--------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GPQGRINR 151 (313)
Q Consensus 84 ---~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~ 151 (313)
.+.+.... ......-++|......++++.+ ...+++|+..++. .+..+. +...-++.
T Consensus 1145 ~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-----~r~IRIWDa~~E~------~~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-----VRSIRIWDAHKEQ------VVADIPYGSSTLVTA 1213 (1387)
T ss_pred cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-----eeEEEEEecccce------eEeecccCCCcccee
Confidence 12221111 0111122222221111121111 1112233322111 111111 11112222
Q ss_pred EEE-ccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceec--eEEEEECCCCCE-EEEeeCCCcEEEEECCCCcEEE
Q 021399 152 AVW-GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT--ITSLAKAADGSH-FLTGSLDKSAKLWDARTLELIK 227 (313)
Q Consensus 152 ~~~-~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~--v~~~~~s~~~~~-l~s~s~dg~i~iwd~~~~~~~~ 227 (313)
+.- .+.|+.|+.|-.||.|++||.+....-..+..-..|+.. |..+.+.++|-. |+||+.||.|++||+++.....
T Consensus 1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc
Confidence 221 134788999999999999998764331112112246666 888888886655 9999999999999999852211
Q ss_pred --EEec----CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccc-cccceeEEEECCCC
Q 021399 228 --TYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINALAFNPDG 300 (313)
Q Consensus 228 --~~~~----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~fspdg 300 (313)
++.. .....++..|+..+.++.|++ ..+.+|+.......+...+ ..+.+ -.+.+.+++|+|--
T Consensus 1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~---q~ikIy~~~G~~l~~~k~n-------~~F~~q~~gs~scL~FHP~~ 1363 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSA---QLIKIYSLSGEQLNIIKYN-------PGFMGQRIGSVSCLAFHPHR 1363 (1387)
T ss_pred cceeeeccccCccceeeeeccCCCeeeecCc---ceEEEEecChhhhcccccC-------cccccCcCCCcceeeecchh
Confidence 1111 224788889998887665543 3455555544443332222 11111 23567999999974
Q ss_pred C
Q 021399 301 K 301 (313)
Q Consensus 301 k 301 (313)
-
T Consensus 1364 ~ 1364 (1387)
T KOG1517|consen 1364 L 1364 (1387)
T ss_pred H
Confidence 3
No 210
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.9e-12 Score=115.13 Aligned_cols=206 Identities=15% Similarity=0.072 Sum_probs=130.1
Q ss_pred CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeC---CCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEE
Q 021399 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108 (313)
Q Consensus 32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~---D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (313)
..|.+||.+ +.....+..|...+.+.+|+|||+.++..+. +..|.+||+.+++.......
T Consensus 184 ~~l~i~D~~-g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~---------------- 246 (433)
T PRK04922 184 YALQVADSD-GYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF---------------- 246 (433)
T ss_pred EEEEEECCC-CCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC----------------
Confidence 458888875 4444566677888999999999998887663 34688899877653221100
Q ss_pred EEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE-EeeCCC--eEEEEECCCCceeeecc
Q 021399 109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDA--IVRIWDTETGKLLKESD 185 (313)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-t~~~d~--~i~lwd~~~~~~~~~~~ 185 (313)
.+......|+|+++.++ +.+.++ .|++||+.++... .+.
T Consensus 247 -------------------------------------~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt 288 (433)
T PRK04922 247 -------------------------------------RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLT 288 (433)
T ss_pred -------------------------------------CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECc
Confidence 01112456888888765 344444 6999999887643 232
Q ss_pred cccCceeceEEEEECCCCCEEEEeeC-CCc--EEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399 186 KETGHKKTITSLAKAADGSHFLTGSL-DKS--AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262 (313)
Q Consensus 186 ~~~~h~~~v~~~~~s~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (313)
.+.......+|+|||+.|+..+. +|. |.++|+.+++..+...........+|+|+++.++.....+.
T Consensus 289 ---~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~------- 358 (433)
T PRK04922 289 ---NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGG------- 358 (433)
T ss_pred ---cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCC-------
Confidence 23444567899999998887764 444 66778877665333223333446899999999877643221
Q ss_pred cCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
.+.+.+||..+++.. .+ .+........|+|||+.++|...
T Consensus 359 ----~~~I~v~d~~~g~~~-~L-t~~~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 359 ----QYRIAVMDLSTGSVR-TL-TPGSLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred ----ceeEEEEECCCCCeE-EC-CCCCCCCCceECCCCCEEEEEEe
Confidence 223444454333221 11 22334556799999999988765
No 211
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.54 E-value=2.1e-12 Score=119.78 Aligned_cols=227 Identities=15% Similarity=0.159 Sum_probs=149.1
Q ss_pred cccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCc-------EEEEecCCCCceEEEEECCCCCeEEEeeCCCcE
Q 021399 5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGE-------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTA 76 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~-------~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v 76 (313)
.|..|+..|..++.++. +.+++|||.||+||+|++..-. ...++.--...+.++.+.+.++.+|.++.||.|
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeE
Confidence 46678888888777654 5999999999999999876422 122333235678889998999999999999999
Q ss_pred EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
++.+++-.+...... ...-.+ .......+..+.+... ..
T Consensus 1123 ~~~~id~~~~~~~~~------~~~ri~----------------------------n~~~~g~vv~m~a~~~-------~~ 1161 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVA------TQVRIP----------------------------NLKKDGVVVSMHAFTA-------IV 1161 (1431)
T ss_pred EEEEcccccccccee------eeeecc----------------------------cccCCCceEEeecccc-------cc
Confidence 999886421100000 000000 0000001111111110 01
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec--CCc
Q 021399 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERP 234 (313)
Q Consensus 157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~ 234 (313)
....++.+..-+.|..||+.+...+.+... ....+.|++++.+|.+++++.|+..|.+.+||+|-+.++..+.+ ..+
T Consensus 1162 ~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~-~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~ 1240 (1431)
T KOG1240|consen 1162 QSHVLVYATDLSRIVSWDTRMRHDAWRLKN-QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAP 1240 (1431)
T ss_pred cceeEEEEEeccceEEecchhhhhHHhhhc-CccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCC
Confidence 112577788888999999987654433322 23457899999999999999999999999999999999988865 356
Q ss_pred eeEEEeccCCC--EEEEcccc-cCceeEeeccCCCceeeeee
Q 021399 235 VNAVTMSPLLD--HVVLGGGQ-DASAVTTTDHRAGKFEAKFF 273 (313)
Q Consensus 235 ~~~~~~~p~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 273 (313)
++-++.+|... ...++++. ..+.+..|+--.+.-...+|
T Consensus 1241 i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1241 IRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLW 1282 (1431)
T ss_pred cceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEE
Confidence 88888888766 55555555 55556666655544444444
No 212
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.53 E-value=8e-13 Score=104.70 Aligned_cols=196 Identities=17% Similarity=0.218 Sum_probs=129.0
Q ss_pred ccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCc---EEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECC
Q 021399 8 GHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE 82 (313)
Q Consensus 8 ~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~---~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~ 82 (313)
.+..++++..|.. |-++|.+.|-|.+-.|||++++. +..++-+|.++|..++|...+ +.|+|.|.||.||++|++
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR 227 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLR 227 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEec
Confidence 3555677777764 45788999999999999999863 467889999999999999865 489999999999999998
Q ss_pred CCeEEEE-ecC---CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399 83 TGAQLFT-FNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (313)
Q Consensus 83 ~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (313)
.-+.-.+ +.. ..+...+.+.+.+....+.. ..-...+...++ .....++..+.+|++.|+.++|.|..
T Consensus 228 ~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf---~~dS~~V~iLDi-----R~P~tpva~L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 228 SLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATF---AMDSNKVVILDI-----RVPCTPVARLRNHQASVNGIAWAPHS 299 (364)
T ss_pred ccccceEEecCCCCCCcceeeccCcCCchHHhhh---hcCCceEEEEEe-----cCCCcceehhhcCcccccceEecCCC
Confidence 7553222 221 22333344433221111100 000111111111 11235677889999999999999875
Q ss_pred -CEEEEeeCCCeEEEEECCCCce--eeecccccCceeceEEEEECC-CCCEEEEeeC
Q 021399 159 -RTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAA-DGSHFLTGSL 211 (313)
Q Consensus 159 -~~i~t~~~d~~i~lwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~ 211 (313)
..|+|||+|....+||+.+... .-.....-.-.+.|.-+.|++ .++.|+.+..
T Consensus 300 ~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 300 SSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred CceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 6899999999999999875321 000000011356899999984 5667766653
No 213
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.52 E-value=8.4e-12 Score=110.84 Aligned_cols=192 Identities=13% Similarity=0.095 Sum_probs=127.8
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCC---CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEE-EeeCCC--cE
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQ--TA 76 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d---~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~--~v 76 (313)
++.+..+...+...+|+|||++|+.++.+ ..|++||+.+++.. .+..+.+.+.+++|+||++.|+ +.+.++ .|
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i 260 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDI 260 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCCccE
Confidence 45566677778899999999999987654 47999999888653 3344566677899999998664 555544 47
Q ss_pred EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
.+||+.+++..... .+........|+|
T Consensus 261 ~~~d~~~~~~~~l~-----------------------------------------------------~~~~~~~~~~~s~ 287 (417)
T TIGR02800 261 YVMDLDGKQLTRLT-----------------------------------------------------NGPGIDTEPSWSP 287 (417)
T ss_pred EEEECCCCCEEECC-----------------------------------------------------CCCCCCCCEEECC
Confidence 77777665322110 0011112345788
Q ss_pred CCCEEEEeeCC-C--eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC---cEEEEECCCCcEEEEEe
Q 021399 157 LNRTIISAGED-A--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---SAKLWDARTLELIKTYV 230 (313)
Q Consensus 157 ~~~~i~t~~~d-~--~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~ 230 (313)
+++.|+..+.. + .|+++|+.+++.. .+. .+.......+|+|+|++|+.++.++ .|.+||++++.. ..+.
T Consensus 288 dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~---~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~ 362 (417)
T TIGR02800 288 DGKSIAFTSDRGGSPQIYMMDADGGEVR-RLT---FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLT 362 (417)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEE-Eee---cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEcc
Confidence 88877765542 2 5888888766532 222 1344567788999999999988876 788999988654 3333
Q ss_pred cCCceeEEEeccCCCEEEEcccc
Q 021399 231 TERPVNAVTMSPLLDHVVLGGGQ 253 (313)
Q Consensus 231 ~~~~~~~~~~~p~~~~~~~~~~~ 253 (313)
........+|+|++..++.+...
T Consensus 363 ~~~~~~~p~~spdg~~l~~~~~~ 385 (417)
T TIGR02800 363 DTGLDESPSFAPNGRMILYATTR 385 (417)
T ss_pred CCCCCCCceECCCCCEEEEEEeC
Confidence 22234556899999988776543
No 214
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.51 E-value=4e-11 Score=103.57 Aligned_cols=267 Identities=19% Similarity=0.178 Sum_probs=145.6
Q ss_pred eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee-CCCcEEEEECCCCeEEEEecC
Q 021399 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETGAQLFTFNF 92 (313)
Q Consensus 14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~v~vWd~~~~~~~~~~~~ 92 (313)
..+.|+|||++++.++.|+.|.++|+.+.+.+++++.-. .-.++++++||++++++. .++.+.++|.++.+.+..+..
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~ 118 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT 118 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE-
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc
Confidence 457899999999999999999999999999999998644 356799999999887665 689999999999888776542
Q ss_pred C--------CCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399 93 D--------SPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (313)
Q Consensus 93 ~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t 163 (313)
. .....+-.++... +++...+ ..+++-+... +........+. .........|+|++++++.
T Consensus 119 ~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd-------~~~I~vVdy~--d~~~~~~~~i~-~g~~~~D~~~dpdgry~~v 188 (369)
T PF02239_consen 119 GGMPVDGPESRVAAIVASPGRPEFVVNLKD-------TGEIWVVDYS--DPKNLKVTTIK-VGRFPHDGGFDPDGRYFLV 188 (369)
T ss_dssp -EE-TTTS---EEEEEE-SSSSEEEEEETT-------TTEEEEEETT--TSSCEEEEEEE---TTEEEEEE-TTSSEEEE
T ss_pred ccccccccCCCceeEEecCCCCEEEEEEcc-------CCeEEEEEec--cccccceeeec-ccccccccccCcccceeee
Confidence 1 1122333333332 2222111 1122222111 11111111221 2234567889999998766
Q ss_pred e-eCCCeEEEEECCCCceeeeccc-ccCceeceEEEE-------E--CCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC
Q 021399 164 A-GEDAIVRIWDTETGKLLKESDK-ETGHKKTITSLA-------K--AADGSHFLTGSLDKSAKLWDARTLELIKTYVTE 232 (313)
Q Consensus 164 ~-~~d~~i~lwd~~~~~~~~~~~~-~~~h~~~v~~~~-------~--s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 232 (313)
+ .....|-++|.++++....+.. ...|......+- | .-.+...++.-....+.+||..+.+.++++...
T Consensus 189 a~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~ 268 (369)
T PF02239_consen 189 AANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ 268 (369)
T ss_dssp EEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred cccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECC
Confidence 4 5677899999998876543321 112332222221 1 112233333333446678999999999999866
Q ss_pred CceeEEEeccCCCEEEEcc--cccCceeEeeccCCCceeeeeeehhhhhhhcccccc-ccceeEEEECCCCCee
Q 021399 233 RPVNAVTMSPLLDHVVLGG--GQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINALAFNPDGKRY 303 (313)
Q Consensus 233 ~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~fspdgk~~ 303 (313)
.....+.-||++.++.+.. +.+...+.+.|.+ +.+.+..+... ..++..++|++||+++
T Consensus 269 G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~------------tl~~~~~i~~~~~~~~~h~ef~~dG~~v 330 (369)
T PF02239_consen 269 GGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKK------------TLKVVKTITPGPGKRVVHMEFNPDGKEV 330 (369)
T ss_dssp SSS--EE--TT-SEEEEE-TT-SSHT-EEEEECC------------GTEEEE-HHHHHT--EEEEEE-TTSSEE
T ss_pred CCcceeecCCCCccEEeeccCCCCCceEEEEECc------------CcceeEEEeccCCCcEeccEECCCCCEE
Confidence 5558888899999998861 2223344444433 32222222111 2348999999999973
No 215
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.51 E-value=3.7e-13 Score=114.73 Aligned_cols=215 Identities=20% Similarity=0.304 Sum_probs=131.1
Q ss_pred CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCC-eeEEEeec--------CCeEEEEECCCceeccc
Q 021399 50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP-ARSVDFAV--------GDKLAVITTDPFMELNS 120 (313)
Q Consensus 50 ~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~ 120 (313)
.|...|.|+.|+.+.+.+.+++.+..++-||+.+.........+.- .......+ .+.+++.++++-+.+..
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 4666778889987766666666555555566544332111100000 00000000 12344444433221110
Q ss_pred cceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCC---------Cceeeeccc-----
Q 021399 121 AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET---------GKLLKESDK----- 186 (313)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~---------~~~~~~~~~----- 186 (313)
..++.-.....|.+.+.+-.|+|+|.-++++|+||.|++|...- ...+.....
T Consensus 92 -------------k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~ 158 (737)
T KOG1524|consen 92 -------------KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSN 158 (737)
T ss_pred -------------ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCC
Confidence 01111223457888899999999999999999999999997321 111111110
Q ss_pred -----------------------ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccC
Q 021399 187 -----------------------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPL 243 (313)
Q Consensus 187 -----------------------~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~ 243 (313)
=..|.+-|.++.|++..+.|+||+.|=..++||.....+...-.++.++.+++|+|+
T Consensus 159 ~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd 238 (737)
T KOG1524|consen 159 SIVFCQGGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE 238 (737)
T ss_pred ceEEecCCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc
Confidence 024888899999999999999999999999999875444444457889999999998
Q ss_pred CCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399 244 LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~ 304 (313)
-.. ++ ++.. ..|+- +...+-|..++|||||.+++
T Consensus 239 ~~~-~v-~S~n--------------t~R~~-----------~p~~GSifnlsWS~DGTQ~a 272 (737)
T KOG1524|consen 239 KDY-LL-WSYN--------------TARFS-----------SPRVGSIFNLSWSADGTQAT 272 (737)
T ss_pred cce-ee-eeee--------------eeeec-----------CCCccceEEEEEcCCCceee
Confidence 332 22 2211 11221 12467899999999999865
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=1.1e-13 Score=117.75 Aligned_cols=78 Identities=23% Similarity=0.414 Sum_probs=71.8
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~ 87 (313)
+..|...+|+|||++||+.|.||.+||+|..+.+++..++..=+...|++|+|||+++++||.|..|.||+..+.+.+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV 367 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV 367 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE
Confidence 447888999999999999999999999999999999888888899999999999999999999999999998876543
No 217
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=2.2e-12 Score=118.07 Aligned_cols=237 Identities=14% Similarity=0.200 Sum_probs=147.5
Q ss_pred ceeEEEEc--cCCCEEEEeeCCCCeEEEe-CCC----CcEEEEec---CC----CCceEEEEECCCCCeEEEeeCCCcEE
Q 021399 12 PLTYLKYN--KDGDLLFSCAKDHTPTVWF-ADN----GERLGTYR---GH----NGAVWCCDVSRDSMTLITGSADQTAK 77 (313)
Q Consensus 12 ~v~~~~fs--~~g~~l~s~s~d~~i~iw~-~~~----~~~~~~~~---~H----~~~V~~~~~~~~~~~l~s~s~D~~v~ 77 (313)
.|..+.+- .|..++++|+.||.||||+ ..+ .+.+..+. ++ .+.=.-++|......|+++|.-..|+
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IR 1190 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIR 1190 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEE
Confidence 46667664 3467999999999999993 333 23343332 22 11113467887766677777789999
Q ss_pred EEECCCCeEEEEecCCC--CeeEEE--eecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCc--eEE
Q 021399 78 LWNVETGAQLFTFNFDS--PARSVD--FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGR--INR 151 (313)
Q Consensus 78 vWd~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~ 151 (313)
|||.+.......+.... .+..++ ...++.++++..++. +++++.. .......+...+.|+.. |..
T Consensus 1191 IWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGs------vRvyD~R---~a~~ds~v~~~R~h~~~~~Iv~ 1261 (1387)
T KOG1517|consen 1191 IWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGS------VRVYDRR---MAPPDSLVCVYREHNDVEPIVH 1261 (1387)
T ss_pred EEecccceeEeecccCCCccceeecccccCCceEEEeecCCc------eEEeecc---cCCccccceeecccCCccccee
Confidence 99998776665554432 222222 122455555544433 3333221 11223456677777766 888
Q ss_pred EEEccCCC-EEEEeeCCCeEEEEECCCCceeeecccccCc---eeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEE
Q 021399 152 AVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGH---KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227 (313)
Q Consensus 152 ~~~~~~~~-~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h---~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 227 (313)
+.+.+.|- .+++|+.+|.|++||++..... .+.....| .+..+++..++....+|+|+. +.|+||++.. +.+.
T Consensus 1262 ~slq~~G~~elvSgs~~G~I~~~DlR~~~~e-~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~ 1338 (1387)
T KOG1517|consen 1262 LSLQRQGLGELVSGSQDGDIQLLDLRMSSKE-TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLN 1338 (1387)
T ss_pred EEeecCCCcceeeeccCCeEEEEecccCccc-ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhc
Confidence 88887664 4999999999999999874221 11111122 235899999999999999999 9999999864 3333
Q ss_pred EEe--------cCCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399 228 TYV--------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262 (313)
Q Consensus 228 ~~~--------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (313)
.+. ....+.|++|||..-.++ +|..+..|.++.
T Consensus 1339 ~~k~n~~F~~q~~gs~scL~FHP~~~llA--aG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1339 IIKYNPGFMGQRIGSVSCLAFHPHRLLLA--AGSADSTVSIYS 1379 (1387)
T ss_pred ccccCcccccCcCCCcceeeecchhHhhh--hccCCceEEEee
Confidence 321 123578999999654433 345555554444
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.6e-11 Score=108.95 Aligned_cols=205 Identities=10% Similarity=-0.009 Sum_probs=125.3
Q ss_pred CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee---CCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEE
Q 021399 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS---ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108 (313)
Q Consensus 32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s---~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (313)
..|.+||.+.... ..+..+...+.+.+|+|||+.++..+ .+..+.+||+.+++......
T Consensus 179 ~~l~~~d~dg~~~-~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~----------------- 240 (429)
T PRK03629 179 YELRVSDYDGYNQ-FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS----------------- 240 (429)
T ss_pred eeEEEEcCCCCCC-EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-----------------
Confidence 3677888765443 34555677899999999999877543 24568888887664321110
Q ss_pred EEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe-eCCC--eEEEEECCCCceeeecc
Q 021399 109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDA--IVRIWDTETGKLLKESD 185 (313)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~-~~d~--~i~lwd~~~~~~~~~~~ 185 (313)
+.+ ......|+|+|+.++.. +.++ .|++||+.+++..+ +.
T Consensus 241 ---------------------------------~~~---~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-lt 283 (429)
T PRK03629 241 ---------------------------------FPR---HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-VT 283 (429)
T ss_pred ---------------------------------CCC---CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-cc
Confidence 011 12235789999888754 3343 58999998776533 22
Q ss_pred cccCceeceEEEEECCCCCEEEEeeCC-Cc--EEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccC-ceeEee
Q 021399 186 KETGHKKTITSLAKAADGSHFLTGSLD-KS--AKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDA-SAVTTT 261 (313)
Q Consensus 186 ~~~~h~~~v~~~~~s~~~~~l~s~s~d-g~--i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~ 261 (313)
.+...+....|+|||+.|+..+.+ +. |..+|+.+++..+...........+|+|+++.++..+..++ ..++.+
T Consensus 284 ---~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~ 360 (429)
T PRK03629 284 ---DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 360 (429)
T ss_pred ---CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEE
Confidence 233456788999999998877754 44 45557777655332222334557889999999877654332 223333
Q ss_pred ccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 262 DHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
|...+.. ..+.. ........|+|||+.++|...
T Consensus 361 dl~~g~~-------------~~Lt~-~~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 361 DLATGGV-------------QVLTD-TFLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred ECCCCCe-------------EEeCC-CCCCCCceECCCCCEEEEEEc
Confidence 4322221 11111 112346789999999988764
No 219
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.50 E-value=1.1e-12 Score=105.14 Aligned_cols=197 Identities=17% Similarity=0.297 Sum_probs=140.9
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeC-CCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFA-DNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~-~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
+|..|.+.|+++.|+|..+.|++|+.|...+||.. +.++ ..-.+..|+.+++++.|+|.++.|++||.-..|-||=+
T Consensus 50 tls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~ 129 (361)
T KOG1523|consen 50 TLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYY 129 (361)
T ss_pred ehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEE
Confidence 78999999999999999999999999999999988 4443 23356678999999999999999999999999888865
Q ss_pred CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
+..+.=+. ..+. + +-+.+.|.++.|+|..-.+
T Consensus 130 E~ENdWWV-------------------------------sKhi-----------k------kPirStv~sldWhpnnVLl 161 (361)
T KOG1523|consen 130 EQENDWWV-------------------------------SKHI-----------K------KPIRSTVTSLDWHPNNVLL 161 (361)
T ss_pred ecccceeh-------------------------------hhhh-----------C------CccccceeeeeccCCccee
Confidence 53221000 0000 0 1123568899999999899
Q ss_pred EEeeCCCeEEEEECCC------------------CceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC
Q 021399 162 ISAGEDAIVRIWDTET------------------GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 223 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~------------------~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~ 223 (313)
+.|+.|++.|++...- ++++.+. ....+.+..+.|+|.|+.|+=.+.|.++.+-|....
T Consensus 162 aaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~---~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 162 AAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA---SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred cccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh---ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 9999999999986321 1111111 134578999999999999999999999999987765
Q ss_pred c-EEEEE-ecCCceeEEEeccCCCEEEEccccc
Q 021399 224 E-LIKTY-VTERPVNAVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 224 ~-~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~ 254 (313)
. .+... ...-|..++.|-. +..++++|.+
T Consensus 239 ~~~v~~~~~~~lP~ls~~~is--e~~vv~ag~~ 269 (361)
T KOG1523|consen 239 SERVQSVATAQLPLLSVSWIS--ENSVVAAGYD 269 (361)
T ss_pred chhccchhhccCCceeeEeec--CCceeecCCC
Confidence 3 22222 1234556666533 2224444444
No 220
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=6.2e-12 Score=111.56 Aligned_cols=206 Identities=15% Similarity=0.118 Sum_probs=123.0
Q ss_pred CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC---CcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEE
Q 021399 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108 (313)
Q Consensus 32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (313)
..+.++|. ++.....+..+...+.+.+|+|||+.++..+.+ ..|.+||+.+++......
T Consensus 176 ~~L~~~D~-dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~----------------- 237 (427)
T PRK02889 176 YQLQISDA-DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVAN----------------- 237 (427)
T ss_pred cEEEEECC-CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeec-----------------
Confidence 34566665 344445566778889999999999988766543 358899988765422110
Q ss_pred EEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE-EeeCCCeEEEE--ECCCCceeeecc
Q 021399 109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGEDAIVRIW--DTETGKLLKESD 185 (313)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-t~~~d~~i~lw--d~~~~~~~~~~~ 185 (313)
..+......|+|+++.++ +.+.++..+|| |...+. +..+.
T Consensus 238 ------------------------------------~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt 280 (427)
T PRK02889 238 ------------------------------------FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLT 280 (427)
T ss_pred ------------------------------------CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECC
Confidence 011223467899998876 45667765555 554443 33332
Q ss_pred cccCceeceEEEEECCCCCEEEEeeC-CCcEEEEE--CCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399 186 KETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWD--ARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262 (313)
Q Consensus 186 ~~~~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (313)
.+........|+|||+.|+..+. +|...+|. +.+++..+...........+|+|+++.++.+....+
T Consensus 281 ---~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g------- 350 (427)
T PRK02889 281 ---QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGG------- 350 (427)
T ss_pred ---CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCC-------
Confidence 23444567789999998886654 45666664 455543222222222345789999998876543321
Q ss_pred cCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
.+++.+||..+++.. .+. ........+|+|||+.+.|..-
T Consensus 351 ----~~~I~v~d~~~g~~~-~lt-~~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 351 ----AFKLYVQDLATGQVT-ALT-DTTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred ----cEEEEEEECCCCCeE-Ecc-CCCCccCceECCCCCEEEEEEe
Confidence 123444444332221 111 1223467899999999998753
No 221
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=1.6e-12 Score=107.01 Aligned_cols=202 Identities=15% Similarity=0.193 Sum_probs=138.9
Q ss_pred EEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceee
Q 021399 46 GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125 (313)
Q Consensus 46 ~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (313)
+-+.+|.+-|.++.|+.++++|++||.|..+++|.++..-...
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k------------------------------------- 92 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK------------------------------------- 92 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc-------------------------------------
Confidence 3457999999999999999999999999999999976421100
Q ss_pred eeeeCCCCCCCceEEEec-CCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC
Q 021399 126 RIARDPADQGGESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS 204 (313)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~ 204 (313)
..+++.... -|.+.|.++.|....+.+.+|+.+++|.+-|+++.+.+-.+.. ....+.|..+..+|..+
T Consensus 93 ---------~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~-~~~~~~VY~m~~~P~DN 162 (609)
T KOG4227|consen 93 ---------TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANE-NNNRGDVYHMDQHPTDN 162 (609)
T ss_pred ---------CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecc-cCcccceeecccCCCCc
Confidence 011122222 2447899999998888999999999999999999877654432 23355899999999999
Q ss_pred EEEEeeCCCcEEEEECCCCc-EEEEEe---cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh
Q 021399 205 HFLTGSLDKSAKLWDARTLE-LIKTYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE 280 (313)
Q Consensus 205 ~l~s~s~dg~i~iwd~~~~~-~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (313)
.+++.+.++.|.+||.+... ++..+. .+..-.++.|+|.-..+++.....++ +.+||.|...-.+ -.
T Consensus 163 ~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G-~~~~D~R~~~~~~--------~~ 233 (609)
T KOG4227|consen 163 TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGG-PNVFDRRMQARPV--------YQ 233 (609)
T ss_pred eEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCC-CCceeeccccchH--------Hh
Confidence 99999999999999988644 332221 23446688999998887776544332 3455554422111 01
Q ss_pred hcccccccc---ceeEEEECCCCCee
Q 021399 281 IGGVKGHFG---PINALAFNPDGKRY 303 (313)
Q Consensus 281 ~~~~~~h~~---~V~~~~fspdgk~~ 303 (313)
...+++-.. .-..+.|+|+|.+|
T Consensus 234 ~~~~~~L~~~~~~~M~~~~~~~G~Q~ 259 (609)
T KOG4227|consen 234 RSMFKGLPQENTEWMGSLWSPSGNQF 259 (609)
T ss_pred hhccccCcccchhhhheeeCCCCCee
Confidence 111222222 22567788888875
No 222
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.4e-11 Score=109.78 Aligned_cols=224 Identities=14% Similarity=0.084 Sum_probs=130.8
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCC-C--CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEE-EeeCCCc--E
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKD-H--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQT--A 76 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d-~--~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~~--v 76 (313)
++.+..+...+.+..|||||++|+..+.+ + .|.+||+.+++.. .+....+.....+|+|||+.++ +.+.++. |
T Consensus 210 ~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 210 EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEE
Confidence 44555666678889999999999877643 3 4778888877642 2222233345689999999665 4566665 5
Q ss_pred EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
.+||+.+++..... .+........|+|
T Consensus 289 y~~dl~tg~~~~lt-----------------------------------------------------~~~~~~~~p~wSp 315 (448)
T PRK04792 289 YVVDIATKALTRIT-----------------------------------------------------RHRAIDTEPSWHP 315 (448)
T ss_pred EEEECCCCCeEECc-----------------------------------------------------cCCCCccceEECC
Confidence 55566554321100 0111223456888
Q ss_pred CCCEEEEeeC-C--CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC-CC--cEEEEECCCCcEEEEEe
Q 021399 157 LNRTIISAGE-D--AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKTYV 230 (313)
Q Consensus 157 ~~~~i~t~~~-d--~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~ 230 (313)
+++.++..+. + ..|+++|+.+++.. .+.. ........+|+|||++|+..+. ++ .|.++|+++++.. .+.
T Consensus 316 DG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~---~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt 390 (448)
T PRK04792 316 DGKSLIFTSERGGKPQIYRVNLASGKVS-RLTF---EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLT 390 (448)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEE-EEec---CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeE-Ecc
Confidence 8887766543 3 35777788766542 2211 1122345689999999877665 34 3555788887652 333
Q ss_pred cCCceeEEEeccCCCEEEEcccccCc-eeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC
Q 021399 231 TERPVNAVTMSPLLDHVVLGGGQDAS-AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298 (313)
Q Consensus 231 ~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp 298 (313)
........+|+|++..++.+...++. .++..+ . .++....+..+.+.+...+|||
T Consensus 391 ~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~------------~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 391 STRLDESPSVAPNGTMVIYSTTYQGKQVLAAVS------------I-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCCCCCCceECCCCCEEEEEEecCCceEEEEEE------------C-CCCceEECcCCCCCcCCCccCC
Confidence 22223345799999988776543322 233222 2 1222223334455667778877
No 223
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2e-11 Score=108.78 Aligned_cols=191 Identities=13% Similarity=0.098 Sum_probs=121.6
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCC---CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEE-EeeCCC--cE
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQ--TA 76 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d---~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~--~v 76 (313)
++.+..+...+...+|||||+.|+..+.+ ..|.+|++++++.. .+....+.+...+|+|||+.++ +.+.++ .|
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~I 269 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEI 269 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECCCCCEEEEEEccCCCceE
Confidence 45566677788899999999999877644 35888899888653 2333344455789999998665 555555 46
Q ss_pred EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
.+||+.+++..... .+........|+|
T Consensus 270 y~~d~~~~~~~~lt-----------------------------------------------------~~~~~~~~~~~sp 296 (430)
T PRK00178 270 YVMDLASRQLSRVT-----------------------------------------------------NHPAIDTEPFWGK 296 (430)
T ss_pred EEEECCCCCeEEcc-----------------------------------------------------cCCCCcCCeEECC
Confidence 66677665432110 0111123456888
Q ss_pred CCCEEEEeeC-C--CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC-C--cEEEEECCCCcEEEEEe
Q 021399 157 LNRTIISAGE-D--AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-K--SAKLWDARTLELIKTYV 230 (313)
Q Consensus 157 ~~~~i~t~~~-d--~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~ 230 (313)
+++.++..+. + ..|+++|+.+++.. .+.. .+ .......|+|||+.|+..+.+ + .|.+||+.+++. +.+.
T Consensus 297 Dg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~-~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt 371 (430)
T PRK00178 297 DGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTF-VG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILT 371 (430)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEE-Eeec-CC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEcc
Confidence 8887766553 2 35778888776532 2221 11 223356799999998877653 3 478899988765 3333
Q ss_pred cCCceeEEEeccCCCEEEEccc
Q 021399 231 TERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 231 ~~~~~~~~~~~p~~~~~~~~~~ 252 (313)
.........|+|++..++.+..
T Consensus 372 ~~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 372 DTSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred CCCCCCCceECCCCCEEEEEEe
Confidence 2222335689999998877654
No 224
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.47 E-value=1.6e-12 Score=110.90 Aligned_cols=197 Identities=18% Similarity=0.221 Sum_probs=127.9
Q ss_pred ccCCCEEEEeeCCCCeEEEeCCCCcEEEEe--cC--CCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEecCC
Q 021399 19 NKDGDLLFSCAKDHTPTVWFADNGERLGTY--RG--HNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFD 93 (313)
Q Consensus 19 s~~g~~l~s~s~d~~i~iw~~~~~~~~~~~--~~--H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~ 93 (313)
.|++--|+.|=.-|.+.+.|....+..+-+ .. -+..|+|+.|-|.+. +|+.+-.+|.+.++|.+-. ...
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----~~~- 255 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----CGA- 255 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccc-----ccC-
Confidence 355655666766778777765543221111 11 136799999988553 6677788999999986211 000
Q ss_pred CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEE
Q 021399 94 SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIW 173 (313)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lw 173 (313)
.......+..++++.+..... .....++..+.-..+.|+..+|+|+|+++|+.+.||.+|||
T Consensus 256 t~p~~~~~k~~~~f~i~t~ks------------------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF 317 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKS------------------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIF 317 (636)
T ss_pred CCCcccccCCCCeeEEeeeec------------------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEe
Confidence 011111122233333322110 00112333333345588999999999999999999999999
Q ss_pred ECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC-ceeEEEecc
Q 021399 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-PVNAVTMSP 242 (313)
Q Consensus 174 d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~p 242 (313)
|..+.+++.... ..-+...|++|||||++|++|+.|..|.+|.+...+.+..-+.+. =|..|+|.|
T Consensus 318 ~fdt~eLlg~mk---SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 318 DFDTQELLGVMK---SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eccHHHHHHHHH---hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 998766554332 244679999999999999999999999999999888776554333 377788886
No 225
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.47 E-value=1.1e-11 Score=97.58 Aligned_cols=100 Identities=19% Similarity=0.332 Sum_probs=80.2
Q ss_pred CCceEEEEEccCCCEEEEe--eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC---CcEEEEEC
Q 021399 146 QGRINRAVWGPLNRTIISA--GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDA 220 (313)
Q Consensus 146 ~~~i~~~~~~~~~~~i~t~--~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---g~i~iwd~ 220 (313)
.++|.+++|+|+++.|++. ..+..|.+||++ .+.+..+ +...+..+.|+|+|++|++++.+ |.+.+||.
T Consensus 59 ~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~-----~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~ 132 (194)
T PF08662_consen 59 EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF-----GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDV 132 (194)
T ss_pred CCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee-----cCCCceEEEECCCCCEEEEEEccCCCcEEEEEEC
Confidence 4579999999999987654 356789999997 4444443 24567889999999999998864 56999999
Q ss_pred CCCcEEEEEecCCceeEEEeccCCCEEEEccc
Q 021399 221 RTLELIKTYVTERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 252 (313)
++.+++.+..+. .+..++|+|+|.+++++..
T Consensus 133 ~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 133 RKKKKISTFEHS-DATDVEWSPDGRYLATATT 163 (194)
T ss_pred CCCEEeeccccC-cEEEEEEcCCCCEEEEEEe
Confidence 999988876554 4789999999999988754
No 226
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=5.4e-11 Score=97.33 Aligned_cols=192 Identities=11% Similarity=0.160 Sum_probs=132.7
Q ss_pred EEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCC--C
Q 021399 17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD--S 94 (313)
Q Consensus 17 ~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~--~ 94 (313)
-|+..---|++..+-+.+++.+++.+..+..+. ...+|.++.++. +.|+.+-.+. |.|+|+.+.+.+.++... .
T Consensus 53 LFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n 128 (391)
T KOG2110|consen 53 LFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPN 128 (391)
T ss_pred ecccceeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCC
Confidence 355433333333333457888888777665554 356788888874 4677766654 999999999988776543 3
Q ss_pred CeeEEEeecC--CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe-EE
Q 021399 95 PARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI-VR 171 (313)
Q Consensus 95 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~-i~ 171 (313)
+...+++++. +..++...+. ..+.+.+++.. .-.++..+..|.+.+..++|+++|..+||+++.|+ ||
T Consensus 129 ~~gl~AlS~n~~n~ylAyp~s~---t~GdV~l~d~~------nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIR 199 (391)
T KOG2110|consen 129 PKGLCALSPNNANCYLAYPGST---TSGDVVLFDTI------NLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIR 199 (391)
T ss_pred ccceEeeccCCCCceEEecCCC---CCceEEEEEcc------cceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEE
Confidence 3334444442 2233322111 12222333221 23567788899999999999999999999999986 78
Q ss_pred EEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (313)
Q Consensus 172 lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (313)
++.+.+++.+.++....- ...|.+++|+|++.+|.+.|..++|.+|.++.
T Consensus 200 Vf~v~~G~kl~eFRRG~~-~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 200 VFSVPEGQKLYEFRRGTY-PVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred EEEcCCccEeeeeeCCce-eeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 999999998887754332 56788999999999999999999999998764
No 227
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=1.9e-11 Score=105.25 Aligned_cols=239 Identities=18% Similarity=0.249 Sum_probs=147.8
Q ss_pred CCCCceEEEEECCCCCeE-EEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecC--CeEEEEECCCceeccccceee-
Q 021399 50 GHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVK- 125 (313)
Q Consensus 50 ~H~~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~- 125 (313)
.|...-+.+..+|||+++ +||-.-..|++||+..-...+.-.....+..+....+ .+.+.+..+..+.+......+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 466677889999999965 5666789999999876544332222222222222111 233333333322221111000
Q ss_pred ---------eeeeCCCC-----------------CCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCc
Q 021399 126 ---------RIARDPAD-----------------QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179 (313)
Q Consensus 126 ---------~~~~~~~~-----------------~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~ 179 (313)
++...... ..+..+..++...+.++.+..++....|++|+.+|.|..||.++..
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 00000000 0112222233334678888899998999999999999999998877
Q ss_pred eeeeccccc---Ccee-----ceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec--CCceeEEEeccCCCEEEE
Q 021399 180 LLKESDKET---GHKK-----TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--ERPVNAVTMSPLLDHVVL 249 (313)
Q Consensus 180 ~~~~~~~~~---~h~~-----~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~ 249 (313)
.+..+.... .|.+ .|+++.|+.+|-.++.|..+|.+.|||+++.+++..-.+ .-++..+.|.+..++-.
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~- 287 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNK- 287 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCce-
Confidence 665544322 2333 499999999999999999999999999999888765544 45788899977633222
Q ss_pred cccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399 250 GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302 (313)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~ 302 (313)
++..|.+ .+++||..+++....+.- ...++++.+=|++=.
T Consensus 288 --------v~S~Dk~----~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~sGm 327 (703)
T KOG2321|consen 288 --------VVSMDKR----ILKIWDECTGKPMASIEP-TSDLNDFCFVPGSGM 327 (703)
T ss_pred --------EEecchH----HhhhcccccCCceeeccc-cCCcCceeeecCCce
Confidence 2222322 357788877777655432 445888888888543
No 228
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=9.8e-11 Score=103.63 Aligned_cols=197 Identities=14% Similarity=0.071 Sum_probs=113.5
Q ss_pred cccccccccceeEEEEccCCCE--E-EEeeCCCC--eEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee-CCC--
Q 021399 3 PILMKGHERPLTYLKYNKDGDL--L-FSCAKDHT--PTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQ-- 74 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~--l-~s~s~d~~--i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~-- 74 (313)
|+.|..+......=+|||||+. + +....++. |.+.++.+++.. .+....+.....+|+|||+.++-.+ .+|
T Consensus 177 ~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~ 255 (428)
T PRK01029 177 LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQGNQLMPTFSPRKKLLAFISDRYGNP 255 (428)
T ss_pred ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce-EeecCCCCccceEECCCCCEEEEEECCCCCc
Confidence 4445555555667799999975 3 24444444 555577766542 3333444556789999998776544 223
Q ss_pred --cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEE
Q 021399 75 --TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152 (313)
Q Consensus 75 --~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (313)
.+..|++..+.. +.......+..+.....
T Consensus 256 di~~~~~~~~~g~~-------------------------------------------------g~~~~lt~~~~~~~~~p 286 (428)
T PRK01029 256 DLFIQSFSLETGAI-------------------------------------------------GKPRRLLNEAFGTQGNP 286 (428)
T ss_pred ceeEEEeecccCCC-------------------------------------------------CcceEeecCCCCCcCCe
Confidence 223344332100 00000011111223456
Q ss_pred EEccCCCEEEEee-CCCeEEEE--ECCC-CceeeecccccCceeceEEEEECCCCCEEEEeeCC---CcEEEEECCCCcE
Q 021399 153 VWGPLNRTIISAG-EDAIVRIW--DTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLEL 225 (313)
Q Consensus 153 ~~~~~~~~i~t~~-~d~~i~lw--d~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---g~i~iwd~~~~~~ 225 (313)
.|+|+|+.|+..+ .++...|| ++.. +.....+. .+...+....|+|||+.|+..+.+ ..|.+||+.+++.
T Consensus 287 ~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt---~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 287 SFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT---KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECcccccceEEec---cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCe
Confidence 7999999887665 45654555 4432 22222222 233456778999999998876653 3689999998876
Q ss_pred EEEEecCCceeEEEeccCCCEEEEccc
Q 021399 226 IKTYVTERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 226 ~~~~~~~~~~~~~~~~p~~~~~~~~~~ 252 (313)
..............|+|++..++....
T Consensus 364 ~~Lt~~~~~~~~p~wSpDG~~L~f~~~ 390 (428)
T PRK01029 364 YQLTTSPENKESPSWAIDSLHLVYSAG 390 (428)
T ss_pred EEccCCCCCccceEECCCCCEEEEEEC
Confidence 433323345677899999998876543
No 229
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=3.1e-12 Score=107.95 Aligned_cols=243 Identities=19% Similarity=0.293 Sum_probs=143.8
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec-CCCCceEEEEECCC--CCeEEEeeCCCcEEEEEC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRD--SMTLITGSADQTAKLWNV 81 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~--~~~l~s~s~D~~v~vWd~ 81 (313)
.|..|.+-|..|.|...|..|+|||.|..|.+||...+..+..|. ||...|+.-.|-|. .+.+++++.||.|++=.+
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i 216 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEI 216 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeee
Confidence 477899999999999999999999999999999999887766554 57777766666553 346677777777776554
Q ss_pred CC-CeE------------EEEecC--CC-----------CeeEEEeec---CCeEEEEECCCceeccccceeeeeeeCCC
Q 021399 82 ET-GAQ------------LFTFNF--DS-----------PARSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPA 132 (313)
Q Consensus 82 ~~-~~~------------~~~~~~--~~-----------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (313)
.. +.+ +.++.. .. .+..++... ..++..-..+ ....+.+..++-++.
T Consensus 217 ~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~----~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 217 LETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD----EKERVGLYTIAVDPR 292 (559)
T ss_pred ccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC----CccceeeeeEecCCC
Confidence 21 111 011110 00 000111100 0111100000 000011111111111
Q ss_pred CC------------------------CCceEE------EecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCc---
Q 021399 133 DQ------------------------GGESVL------ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK--- 179 (313)
Q Consensus 133 ~~------------------------~~~~~~------~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~--- 179 (313)
.. ....+. ......-.|++++++.++.-++.+-.|-.|+++....+.
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 00 000000 001122357899999777777778889999999543221
Q ss_pred ---------eeeecccccCce--eceEEE-EECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEeccCCCE
Q 021399 180 ---------LLKESDKETGHK--KTITSL-AKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDH 246 (313)
Q Consensus 180 ---------~~~~~~~~~~h~--~~v~~~-~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~~~ 246 (313)
..+++. .+|. ..|..+ .|-|...+++|||.-|.|.||+-.+++.++-+.. ...|+|+.=+|....
T Consensus 373 p~~~s~~~~~~k~vY--KGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~Pv 450 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVY--KGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPV 450 (559)
T ss_pred CCCCcchhhccchhh--cccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCch
Confidence 111111 2454 346666 4678899999999999999999999988766543 347899999999887
Q ss_pred EEEcccc
Q 021399 247 VVLGGGQ 253 (313)
Q Consensus 247 ~~~~~~~ 253 (313)
++.+|-+
T Consensus 451 LAsSGid 457 (559)
T KOG1334|consen 451 LASSGID 457 (559)
T ss_pred hhccCCc
Confidence 7666543
No 230
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.41 E-value=1.8e-10 Score=102.41 Aligned_cols=205 Identities=15% Similarity=0.069 Sum_probs=125.3
Q ss_pred CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC---CcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEE
Q 021399 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA 108 (313)
Q Consensus 32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (313)
..|.++|.+ +.....+..+...+.+.+|+|||+.++.++.+ ..|++||+.+++......
T Consensus 170 ~~l~~~d~~-g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~----------------- 231 (417)
T TIGR02800 170 YELQVADYD-GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS----------------- 231 (417)
T ss_pred ceEEEEcCC-CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-----------------
Confidence 356677764 33345566677789999999999988776543 478899987764321110
Q ss_pred EEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE-eeCC--CeEEEEECCCCceeeecc
Q 021399 109 VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS-AGED--AIVRIWDTETGKLLKESD 185 (313)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t-~~~d--~~i~lwd~~~~~~~~~~~ 185 (313)
+.+......|+|+++.|+. .+.+ ..|++||+.++... .+.
T Consensus 232 ------------------------------------~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~ 274 (417)
T TIGR02800 232 ------------------------------------FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLT 274 (417)
T ss_pred ------------------------------------CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECC
Confidence 1112234568888887764 3333 46889998876542 222
Q ss_pred cccCceeceEEEEECCCCCEEEEeeCC-C--cEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccC-ceeEee
Q 021399 186 KETGHKKTITSLAKAADGSHFLTGSLD-K--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDA-SAVTTT 261 (313)
Q Consensus 186 ~~~~h~~~v~~~~~s~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~ 261 (313)
.+........|+|||+.|+..+.. + .|.++|+++++..............+|+|++..++.+..... ..++.+
T Consensus 275 ---~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~ 351 (417)
T TIGR02800 275 ---NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVM 351 (417)
T ss_pred ---CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEE
Confidence 233344567899999988776643 3 588889887765433333445667889999998877654321 123344
Q ss_pred ccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 262 DHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
|...+.. ..+.. .......+|+|||+.++|...
T Consensus 352 d~~~~~~-------------~~l~~-~~~~~~p~~spdg~~l~~~~~ 384 (417)
T TIGR02800 352 DLDGGGE-------------RVLTD-TGLDESPSFAPNGRMILYATT 384 (417)
T ss_pred eCCCCCe-------------EEccC-CCCCCCceECCCCCEEEEEEe
Confidence 4322111 11111 122345689999999888654
No 231
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=3.4e-10 Score=100.93 Aligned_cols=205 Identities=14% Similarity=0.025 Sum_probs=122.1
Q ss_pred CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC---CcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEE
Q 021399 33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109 (313)
Q Consensus 33 ~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (313)
.|.++|.+.+. ...+..+...+....|+|||+.++..+.+ ..|.+||+.+++......
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~------------------ 240 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN------------------ 240 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC------------------
Confidence 36666766444 34565677789999999999987665533 357788887664321100
Q ss_pred EECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE-eeCCC--eEEEEECCCCceeeeccc
Q 021399 110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS-AGEDA--IVRIWDTETGKLLKESDK 186 (313)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t-~~~d~--~i~lwd~~~~~~~~~~~~ 186 (313)
..+......|+|+|+.++. ...++ .|++||+.++... .+.
T Consensus 241 -----------------------------------~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt- 283 (430)
T PRK00178 241 -----------------------------------FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVT- 283 (430)
T ss_pred -----------------------------------CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Ecc-
Confidence 0011223568899887764 43344 6888899876543 232
Q ss_pred ccCceeceEEEEECCCCCEEEEeeC-CC--cEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399 187 ETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH 263 (313)
Q Consensus 187 ~~~h~~~v~~~~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (313)
.+........|+|||+.|+..+. ++ .|.++|+.+++..+...........+|+|+++.++.....++
T Consensus 284 --~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~-------- 353 (430)
T PRK00178 284 --NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDG-------- 353 (430)
T ss_pred --cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCC--------
Confidence 23444566789999998876654 33 577788888775333222222345689999998877643322
Q ss_pred CCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 264 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
.+.+..+|..+++. ..+ .+........|+|||+.+.|...
T Consensus 354 ---~~~l~~~dl~tg~~-~~l-t~~~~~~~p~~spdg~~i~~~~~ 393 (430)
T PRK00178 354 ---NFHVAAQDLQRGSV-RIL-TDTSLDESPSVAPNGTMLIYATR 393 (430)
T ss_pred ---ceEEEEEECCCCCE-EEc-cCCCCCCCceECCCCCEEEEEEe
Confidence 12233344332221 111 11112234589999999988753
No 232
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.37 E-value=1.4e-10 Score=95.59 Aligned_cols=221 Identities=17% Similarity=0.248 Sum_probs=150.6
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc----EEEEecCCCCceEEEEECCCC-CeEEEeeCC--CcEEEE
Q 021399 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----RLGTYRGHNGAVWCCDVSRDS-MTLITGSAD--QTAKLW 79 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~----~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D--~~v~vW 79 (313)
...+++|..+... ...|++|-.+|.+.+|..+.+. .+..+..| ..+..+.-++.. ..+++||.. ..+++|
T Consensus 102 ~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 102 SLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred ccccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeee
Confidence 3445555555443 4478888999999999887442 22233333 345555545443 466779988 889999
Q ss_pred ECCCCeEEEEecC-CC-------C--eeEEEeecC---CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCC
Q 021399 80 NVETGAQLFTFNF-DS-------P--ARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 146 (313)
Q Consensus 80 d~~~~~~~~~~~~-~~-------~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (313)
|++..+.++.... .. | +..+.|.++ .+++.++. +...++++.. ....++..+.--.
T Consensus 179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~------~hqvR~YDt~-----~qRRPV~~fd~~E 247 (412)
T KOG3881|consen 179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITR------YHQVRLYDTR-----HQRRPVAQFDFLE 247 (412)
T ss_pred ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEec------ceeEEEecCc-----ccCcceeEecccc
Confidence 9998877665421 11 1 123334444 12222211 1112222221 3456777777778
Q ss_pred CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE
Q 021399 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226 (313)
Q Consensus 147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 226 (313)
.++.++...|.++.|.+|..-+.+..||.+.++++.... .+..+.++++-.+|.+.++++++.|..+||+|+++.+++
T Consensus 248 ~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~--kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 248 NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGL--KGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred CcceeeeecCCCcEEEEecccchhheecccCceeecccc--CCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 889999999999999999999999999999988776522 356789999999999999999999999999999997777
Q ss_pred EEEecCCceeEEEeccC
Q 021399 227 KTYVTERPVNAVTMSPL 243 (313)
Q Consensus 227 ~~~~~~~~~~~~~~~p~ 243 (313)
........++++-+.++
T Consensus 326 ~kvYvKs~lt~il~~~~ 342 (412)
T KOG3881|consen 326 HKVYVKSRLTFILLRDD 342 (412)
T ss_pred hhhhhhccccEEEecCC
Confidence 66555566777777554
No 233
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=9.5e-12 Score=113.74 Aligned_cols=150 Identities=24% Similarity=0.342 Sum_probs=122.1
Q ss_pred EEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCC
Q 021399 16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP 95 (313)
Q Consensus 16 ~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~ 95 (313)
+.++++--++++|+.=+.|.+|+..-...-..+.||++.++++.++-||.+++|.|.|.++|+|++++.+...
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~------- 211 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG------- 211 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC-------
Confidence 4567777899999999999999877333333689999999999999999999999999999999998865321
Q ss_pred eeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEEC
Q 021399 96 ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT 175 (313)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~ 175 (313)
...-+|..++..+++.|. +++|+++|.+.++|+.
T Consensus 212 --------------------------------------------~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 212 --------------------------------------------CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred --------------------------------------------cccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 122468888999999997 8999999999999976
Q ss_pred CCCceeeecccccCc-eeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399 176 ETGKLLKESDKETGH-KKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (313)
Q Consensus 176 ~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (313)
+- ..+..+. .| ...+..++..++...++|++.|+.+++||+..
T Consensus 246 ~~-~~l~~y~---~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 246 NG-TQLEVYD---EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred cc-ceehhhh---hhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 53 3344433 33 35689999999999999999999999999764
No 234
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.35 E-value=1.2e-10 Score=103.87 Aligned_cols=207 Identities=18% Similarity=0.231 Sum_probs=133.4
Q ss_pred CCeEEEeCCCC-cEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEE
Q 021399 32 HTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109 (313)
Q Consensus 32 ~~i~iw~~~~~-~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (313)
+.+.||++++. .....+.. ..+|.|+.|+|.. ++++.|..+|.|-+||++.+.... ...
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-------~s~----------- 282 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-------PSG----------- 282 (555)
T ss_pred ceEEEEecCCCCCceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-------Ccc-----------
Confidence 46899999877 44445544 6789999999854 578888899999999998654210 000
Q ss_pred EECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC--CCEEEEeeCCCeEEEEECCCCceeeec---
Q 021399 110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL--NRTIISAGEDAIVRIWDTETGKLLKES--- 184 (313)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~i~t~~~d~~i~lwd~~~~~~~~~~--- 184 (313)
.......|..++..+.|..+ ...|++++.||.|..|+++.-.+....
T Consensus 283 ----------------------------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~ 334 (555)
T KOG1587|consen 283 ----------------------------LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLL 334 (555)
T ss_pred ----------------------------cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccc
Confidence 00111235556666666533 244899999999999987653321111
Q ss_pred ccc------cCceeceEEEEECC-CCCEEEEeeCCCcEEEEE---CCCCc-E----EEE-EecCCceeEEEeccCCCEEE
Q 021399 185 DKE------TGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWD---ARTLE-L----IKT-YVTERPVNAVTMSPLLDHVV 248 (313)
Q Consensus 185 ~~~------~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd---~~~~~-~----~~~-~~~~~~~~~~~~~p~~~~~~ 248 (313)
... ......+++++|.+ +-..++.|+.+|.|.-=+ .+... . ... ..+..+++++.++|.+.-++
T Consensus 335 ~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~f 414 (555)
T KOG1587|consen 335 ESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNF 414 (555)
T ss_pred ccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcccee
Confidence 000 01224578888876 445689999999987633 22222 1 111 13567899999999999888
Q ss_pred EcccccCceeEeeccCCCceeeeeeehh-hhhhhccccccccceeEEEECCC
Q 021399 249 LGGGQDASAVTTTDHRAGKFEAKFFDKI-LQEEIGGVKGHFGPINALAFNPD 299 (313)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~~~fspd 299 (313)
.++|+.. +++|... ...++-.+..+...|++++|||.
T Consensus 415 ls~gDW~--------------vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 415 LSVGDWT--------------VRIWSEDVIASPLLSLDSSPDYVTDVAWSPT 452 (555)
T ss_pred eeeccce--------------eEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence 8877332 3455543 33444445567778999999998
No 235
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=4.8e-11 Score=102.88 Aligned_cols=193 Identities=16% Similarity=0.216 Sum_probs=140.9
Q ss_pred EEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCC
Q 021399 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS 94 (313)
Q Consensus 15 ~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~ 94 (313)
.++++.-..=|+.++....|+-.+++.|+.+..|.--.+.++++..++...+|+.|+.||.|..||.++...+.++....
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~ 217 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAAS 217 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeeccc
Confidence 35555333334445555677778999999998898888999999999999999999999999999998766544332211
Q ss_pred CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEE
Q 021399 95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWD 174 (313)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd 174 (313)
.+.+ .+. ......++.+.|..+|-.+++|..+|.+.|+|
T Consensus 218 ~v~s-------------------------------~pg----------~~~~~svTal~F~d~gL~~aVGts~G~v~iyD 256 (703)
T KOG2321|consen 218 SVNS-------------------------------HPG----------GDAAPSVTALKFRDDGLHVAVGTSTGSVLIYD 256 (703)
T ss_pred ccCC-------------------------------Ccc----------ccccCcceEEEecCCceeEEeeccCCcEEEEE
Confidence 1000 000 00112467788888888899999999999999
Q ss_pred CCCCceeeecccccCceeceEEEEECCC--CCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcc
Q 021399 175 TETGKLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 251 (313)
+++.+++..-. .+..-.|..+.|.+. ++.++|.. ...++|||-.+++....+.....++.+|+-|.+..++++-
T Consensus 257 LRa~~pl~~kd--h~~e~pi~~l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~An 332 (703)
T KOG2321|consen 257 LRASKPLLVKD--HGYELPIKKLDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTAN 332 (703)
T ss_pred cccCCceeecc--cCCccceeeecccccCCCceEEecc-hHHhhhcccccCCceeeccccCCcCceeeecCCceEEEec
Confidence 99988765433 234567888888665 44455543 3568999999999998887777899999999998888763
No 236
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.33 E-value=7.7e-09 Score=87.80 Aligned_cols=225 Identities=10% Similarity=0.084 Sum_probs=134.1
Q ss_pred EccCCCEEEEeeC----------CCCeEEEeCCCCcEEEEecCCCC-------ceEEEEECCCCCeEEEee--CCCcEEE
Q 021399 18 YNKDGDLLFSCAK----------DHTPTVWFADNGERLGTYRGHNG-------AVWCCDVSRDSMTLITGS--ADQTAKL 78 (313)
Q Consensus 18 fs~~g~~l~s~s~----------d~~i~iw~~~~~~~~~~~~~H~~-------~V~~~~~~~~~~~l~s~s--~D~~v~v 78 (313)
+||||+.|+.+.. +..|.+||.++.+.+.++.--.. .-...+++|||++++... .+..|-+
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 8999998888776 78899999999999988864222 234678999999887655 3799999
Q ss_pred EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCC-ceEEEecCCCCce-EEEEEcc
Q 021399 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG-ESVLILKGPQGRI-NRAVWGP 156 (313)
Q Consensus 79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i-~~~~~~~ 156 (313)
.|+.+++.+..+........+-.. .+.+.+...+... ..+..+...... .....+.+...++ ..-.+.+
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~-e~~~~~~~~Dg~~--------~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~ 203 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTA-NDTFFMHCRDGSL--------AKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN 203 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEec-CCccEEEeecCce--------EEEEecCCCceEEeeeeeecCCccccccCCceEc
Confidence 999999887766543322211111 1111122222111 111110000000 0000111100000 0002344
Q ss_pred -CCCEEEEeeCCCeEEEEECCCC-----ceeeeccccc---C-ceeceEEEEECCCCCEEEEeeC----------CCcEE
Q 021399 157 -LNRTIISAGEDAIVRIWDTETG-----KLLKESDKET---G-HKKTITSLAKAADGSHFLTGSL----------DKSAK 216 (313)
Q Consensus 157 -~~~~i~t~~~d~~i~lwd~~~~-----~~~~~~~~~~---~-h~~~v~~~~~s~~~~~l~s~s~----------dg~i~ 216 (313)
++.++....+ |.|.+.|+... ..+..+.... + ......-++++++++++..... .+.|.
T Consensus 204 ~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ 282 (352)
T TIGR02658 204 KSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLF 282 (352)
T ss_pred CCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEE
Confidence 6666665555 99999995332 2222221110 0 1223334899999998887532 25799
Q ss_pred EEECCCCcEEEEEecCCceeEEEeccCCC-EEEEccc
Q 021399 217 LWDARTLELIKTYVTERPVNAVTMSPLLD-HVVLGGG 252 (313)
Q Consensus 217 iwd~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~ 252 (313)
++|.++++.+..+.....+..++++|++. .++++.+
T Consensus 283 ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~ 319 (352)
T TIGR02658 283 VVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST 319 (352)
T ss_pred EEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC
Confidence 99999999999998888899999999999 7776543
No 237
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=1.7e-11 Score=117.64 Aligned_cols=221 Identities=14% Similarity=0.207 Sum_probs=150.4
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC-CCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
.++.|-..|.++.=+|...+.+||+.||.|++|....+..+..++. -...|+.+.|+.+|+.+..+..||.+-+|.+.
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-
Confidence 4555667788888889999999999999999999988888777753 34789999999999999999999999999977
Q ss_pred CeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
.+...... ++.....+.|.. ...+ +.+....+.....|+.. ..+..-++...|.+.++.+++-|....++
T Consensus 2282 pk~~~s~qchnk~~~Df~Fi~--s~~~--tag~s~d~~n~~lwDtl-----~~~~~s~v~~~H~~gaT~l~~~P~~qlli 2352 (2439)
T KOG1064|consen 2282 PKPYTSWQCHNKALSDFRFIG--SLLA--TAGRSSDNRNVCLWDTL-----LPPMNSLVHTCHDGGATVLAYAPKHQLLI 2352 (2439)
T ss_pred CcceeccccCCccccceeeee--hhhh--ccccCCCCCcccchhcc-----cCcccceeeeecCCCceEEEEcCcceEEE
Confidence 23322222 222333333322 1100 00001111122222211 11223334478999999999999999999
Q ss_pred EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEecc
Q 021399 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p 242 (313)
+||.+|.|+|||++..++..++. . +. ...++++|+..|.++||++.....+.++..+..-... |--
T Consensus 2353 sggr~G~v~l~D~rqrql~h~~~--------~----~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gf-Fr~ 2418 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQ--------A----LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGF-FRN 2418 (2439)
T ss_pred ecCCcCcEEEeehHHHHHHHHhh--------h----hh-hhheeeccCcccceEEEEccccchhhcCchhhcccch-hhh
Confidence 99999999999998876544332 1 33 4578999999999999999988887777654422222 444
Q ss_pred CCCEEEE
Q 021399 243 LLDHVVL 249 (313)
Q Consensus 243 ~~~~~~~ 249 (313)
.|.++.+
T Consensus 2419 ~g~Q~~v 2425 (2439)
T KOG1064|consen 2419 IGMQINV 2425 (2439)
T ss_pred cCceeee
Confidence 4444444
No 238
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=7.5e-10 Score=98.75 Aligned_cols=204 Identities=11% Similarity=0.042 Sum_probs=118.9
Q ss_pred CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeC-CC--cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEE
Q 021399 33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAV 109 (313)
Q Consensus 33 ~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~-D~--~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (313)
.+.++|.+... ...+..+...+.+..|+|||+.++-.+. ++ .|.+||+.+++.......
T Consensus 199 ~l~i~d~dG~~-~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~----------------- 260 (448)
T PRK04792 199 QLMIADYDGYN-EQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF----------------- 260 (448)
T ss_pred EEEEEeCCCCC-ceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-----------------
Confidence 45556754433 3455566778889999999997766543 33 477778776543211000
Q ss_pred EECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE-eeCCC--eEEEEECCCCceeeeccc
Q 021399 110 ITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS-AGEDA--IVRIWDTETGKLLKESDK 186 (313)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t-~~~d~--~i~lwd~~~~~~~~~~~~ 186 (313)
. +......|+|+++.|+. .+.++ .|+++|+.+++.. .+.
T Consensus 261 ---------------------------------~---g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt- 302 (448)
T PRK04792 261 ---------------------------------P---GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RIT- 302 (448)
T ss_pred ---------------------------------C---CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECc-
Confidence 0 11123568999987765 45555 4888898876542 332
Q ss_pred ccCceeceEEEEECCCCCEEEEeeC-CC--cEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccC-ceeEeec
Q 021399 187 ETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDA-SAVTTTD 262 (313)
Q Consensus 187 ~~~h~~~v~~~~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~ 262 (313)
.+.......+|+|||+.|+..+. ++ .|.++|+++++..+...........+|+|+++.++.+....+ ..++..|
T Consensus 303 --~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~d 380 (448)
T PRK04792 303 --RHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQD 380 (448)
T ss_pred --cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEE
Confidence 23445667889999998876654 33 466778887765432222222345689999998877643222 1233334
Q ss_pred cCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 263 HRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
...+... .+... ......+|+|||+.++|...
T Consensus 381 l~~g~~~-------------~lt~~-~~d~~ps~spdG~~I~~~~~ 412 (448)
T PRK04792 381 LETGAMQ-------------VLTST-RLDESPSVAPNGTMVIYSTT 412 (448)
T ss_pred CCCCCeE-------------EccCC-CCCCCceECCCCCEEEEEEe
Confidence 3332211 11111 11223479999999988653
No 239
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.30 E-value=6.7e-09 Score=89.88 Aligned_cols=258 Identities=16% Similarity=0.131 Sum_probs=147.4
Q ss_pred EEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecC
Q 021399 25 LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG 104 (313)
Q Consensus 25 l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~ 104 (313)
+++-..++.|.|.|.++.+.+.++......-..+.++|||++++.+++||.|.++|+.+.+.+..+........+.++++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~D 88 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPD 88 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--T
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCC
Confidence 34556789999999999999999987544434577999999999999999999999999998888888778888999988
Q ss_pred CeEEEEECC--Ccee-ccccceeeeeeeCCCCCCCceEEEec-------CCCCceEEEEEccCCCEEEEe-eCCCeEEEE
Q 021399 105 DKLAVITTD--PFME-LNSAIHVKRIARDPADQGGESVLILK-------GPQGRINRAVWGPLNRTIISA-GEDAIVRIW 173 (313)
Q Consensus 105 ~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~i~t~-~~d~~i~lw 173 (313)
++.+++.+. +... ++. ...+.+..+. ...+++..+.-+|....++.. -+.+.|-+-
T Consensus 89 G~~~~v~n~~~~~v~v~D~-------------~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 89 GKYVYVANYEPGTVSVIDA-------------ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp TTEEEEEEEETTEEEEEET-------------TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred CCEEEEEecCCCceeEecc-------------ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 877665431 1111 111 0111222211 133466677777777755544 455888787
Q ss_pred ECCCCceeeecccccCceeceEEEEECCCCCEEEEe-eCCCcEEEEECCCCcEEEEEecC-----CceeEEEeccCCCEE
Q 021399 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVTE-----RPVNAVTMSPLLDHV 247 (313)
Q Consensus 174 d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~ 247 (313)
|....+.+..... .-........|+|++.+++.+ ..++.|-++|.++++.+..+... .+...+ -+|...-+
T Consensus 156 dy~d~~~~~~~~i--~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~v 232 (369)
T PF02239_consen 156 DYSDPKNLKVTTI--KVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPV 232 (369)
T ss_dssp ETTTSSCEEEEEE--E--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEE
T ss_pred Eeccccccceeee--cccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceE
Confidence 8766543322111 122346678999999987664 45778999999998887765421 122222 25554434
Q ss_pred EEcccccCce--eEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 248 VLGGGQDASA--VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 248 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
....+..... ....+ ....+|....+.++.+....++ .-++-|||++++..
T Consensus 233 w~~~~~~~~~~~~ig~~------~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwv 285 (369)
T PF02239_consen 233 WATSGLGYFAIPLIGTD------PVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWV 285 (369)
T ss_dssp EEEEBSSSSEEEEEE--------TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEE
T ss_pred EeeccccceecccccCC------ccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEe
Confidence 3333222221 11111 1223555555556666655566 67777999997643
No 240
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.28 E-value=1.5e-09 Score=94.00 Aligned_cols=104 Identities=23% Similarity=0.279 Sum_probs=87.4
Q ss_pred cCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (313)
Q Consensus 143 ~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (313)
..|.+.++.+.++..-..|-+++.|+.+..|+.+..+.++... .....+.+++.+|||..+++++ ++|++||+++
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~---~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~ 173 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK---EQKPLVSSLCISPDGKILLTAS--RQIKVLDIET 173 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec---cCCCccceEEEcCCCCEEEecc--ceEEEEEccC
Confidence 4578889999988887889999999999999999888776543 3467889999999999999988 6899999999
Q ss_pred CcEEEEEe-cCCceeEEEeccC-----CCEEEEcc
Q 021399 223 LELIKTYV-TERPVNAVTMSPL-----LDHVVLGG 251 (313)
Q Consensus 223 ~~~~~~~~-~~~~~~~~~~~p~-----~~~~~~~~ 251 (313)
++.+..+. +..++++++|.-. |.+++.+.
T Consensus 174 kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa 208 (541)
T KOG4547|consen 174 KEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSA 208 (541)
T ss_pred ceEEEEecCCCcceEEEEEEEeccccccceeeecc
Confidence 99999997 4678999999776 56666543
No 241
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=2.6e-11 Score=110.94 Aligned_cols=78 Identities=35% Similarity=0.618 Sum_probs=72.4
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE-EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
|..+.||++.+..+.|+.||.+++|.|.|.++|+|++++.+... +.-+|...||.+.|.|+ .++|++.|-+.++|+.
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 56799999999999999999999999999999999999998876 67789999999999987 8999999999999964
Q ss_pred C
Q 021399 82 E 82 (313)
Q Consensus 82 ~ 82 (313)
.
T Consensus 246 ~ 246 (967)
T KOG0974|consen 246 N 246 (967)
T ss_pred c
Confidence 4
No 242
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.25 E-value=1.9e-09 Score=87.81 Aligned_cols=247 Identities=15% Similarity=0.186 Sum_probs=137.8
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC-c----EEEEecCCCC------------ceEEEEECCCCC--eEEEe
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG-E----RLGTYRGHNG------------AVWCCDVSRDSM--TLITG 70 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~-~----~~~~~~~H~~------------~V~~~~~~~~~~--~l~s~ 70 (313)
.+-+.++.|+.+|++|++|..+|.|-++.-+.. . ...+++.|+. .|..+.|.++++ .|+..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 345789999999999999999999999943322 2 3456666764 478889987764 67777
Q ss_pred eCCCcEEEEECCCCeEEE---EecCC---CCeeEEE---eecCCeEEEEE-------------------CCCceec---c
Q 021399 71 SADQTAKLWNVETGAQLF---TFNFD---SPARSVD---FAVGDKLAVIT-------------------TDPFMEL---N 119 (313)
Q Consensus 71 s~D~~v~vWd~~~~~~~~---~~~~~---~~~~~~~---~~~~~~~~~~~-------------------~~~~~~~---~ 119 (313)
..|.+||+|.+....... .+... ..+.++. ..+-+..+.+. ++....+ +
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADd 184 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADD 184 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccc
Confidence 899999999886432211 00000 0011111 00111111111 1111000 1
Q ss_pred ccceeeeeeeCCCCCCCceEEEecCCC-----CceEEEEEccCC-CEEEEeeCCCeEEEEECCCCceeee----ccc---
Q 021399 120 SAIHVKRIARDPADQGGESVLILKGPQ-----GRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKE----SDK--- 186 (313)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~----~~~--- 186 (313)
..+++|.+.- .+. .-.+..++-+. ..|++..|+|.. +.|+-.+..|.|+|.|++...+... +..
T Consensus 185 LRINLWnlei--~d~-sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 185 LRINLWNLEI--IDQ-SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred eeeeeccccc--cCC-ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 1122222211 010 11122222222 346777888875 5677788899999999985433211 000
Q ss_pred cc------CceeceEEEEECCCCCEEEEeeCCCcEEEEECCC-CcEEEEEecCC----------------ceeEEEeccC
Q 021399 187 ET------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART-LELIKTYVTER----------------PVNAVTMSPL 243 (313)
Q Consensus 187 ~~------~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~----------------~~~~~~~~p~ 243 (313)
.. .--..|..+.|+..|.++++-.. .+|++||+.. .+++.+++... .-..++|+-+
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~ 340 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGN 340 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCC
Confidence 00 01235778899999999987654 6899999954 56666664321 1245777766
Q ss_pred CCEEEEcccccCceeEeec
Q 021399 244 LDHVVLGGGQDASAVTTTD 262 (313)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~ 262 (313)
+.++++| + ..+.+.+++
T Consensus 341 ~~~v~TG-s-y~n~frvf~ 357 (433)
T KOG1354|consen 341 DSYVMTG-S-YNNVFRVFN 357 (433)
T ss_pred cceEecc-c-ccceEEEec
Confidence 6555443 3 344555555
No 243
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.23 E-value=7.2e-10 Score=95.98 Aligned_cols=124 Identities=14% Similarity=0.186 Sum_probs=106.3
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeE
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNA 237 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~ 237 (313)
..++-|...|.|-++++..++.-.++. ...|.+.|.++.++.+-.+|.|++.|+.+-.|+..++..++.+.. ...+.+
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~s-t~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~s 149 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLS-TDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSS 149 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEe-cCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccce
Confidence 357778888999999998887655443 357999999999999999999999999999999999999888864 445788
Q ss_pred EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (313)
Q Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd 299 (313)
++.+|++..+++++. .++.||.++.+.+..|.||.++|.+++|-.+
T Consensus 150 l~is~D~~~l~~as~----------------~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 150 LCISPDGKILLTASR----------------QIKVLDIETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred EEEcCCCCEEEeccc----------------eEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence 999999988887754 5788999999999999999999999999888
No 244
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=5.1e-09 Score=92.80 Aligned_cols=182 Identities=13% Similarity=0.087 Sum_probs=107.4
Q ss_pred ccceeEEEEccCCCEEEEeeC-CC----CeEEEeCCCC---cEEEEecCCCCceEEEEECCCCCeEEEee-CCCcEEEEE
Q 021399 10 ERPLTYLKYNKDGDLLFSCAK-DH----TPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWN 80 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~-d~----~i~iw~~~~~---~~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~v~vWd 80 (313)
.+.....+|||||+.|+..+. +| .+.+|++..+ +......++.+.....+|+|||+.++..+ .+|..++|.
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~ 309 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI 309 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence 334456799999998887653 22 3344666643 32223333334446789999998666544 566666664
Q ss_pred CCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (313)
+.-... . + ....+......+....|+|+|+.
T Consensus 310 ~~~~~~-------g-----------------------------------------~-~~~~lt~~~~~~~~p~wSPDG~~ 340 (428)
T PRK01029 310 MQIDPE-------G-----------------------------------------Q-SPRLLTKKYRNSSCPAWSPDGKK 340 (428)
T ss_pred EECccc-------c-----------------------------------------c-ceEEeccCCCCccceeECCCCCE
Confidence 321000 0 0 00001111223456779999998
Q ss_pred EEEeeCC---CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC---CCcEEEEECCCCcEEEEEecCCc
Q 021399 161 IISAGED---AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDARTLELIKTYVTERP 234 (313)
Q Consensus 161 i~t~~~d---~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~ 234 (313)
|+..+.+ ..|.+||+.+++... +.. ....+....|+|||+.|+.... ...|.++|+.+++..........
T Consensus 341 Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~---~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g~ 416 (428)
T PRK01029 341 IAFCSVIKGVRQICVYDLATGRDYQ-LTT---SPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGE 416 (428)
T ss_pred EEEEEcCCCCcEEEEEECCCCCeEE-ccC---CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCc
Confidence 8876543 469999998876532 221 1234567889999998875433 35688889988776544434445
Q ss_pred eeEEEeccCC
Q 021399 235 VNAVTMSPLL 244 (313)
Q Consensus 235 ~~~~~~~p~~ 244 (313)
....+|+|..
T Consensus 417 ~~~p~Ws~~~ 426 (428)
T PRK01029 417 KRFPSWGAFP 426 (428)
T ss_pred ccCceecCCC
Confidence 6677787754
No 245
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.4e-08 Score=87.78 Aligned_cols=277 Identities=17% Similarity=0.145 Sum_probs=154.5
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEe-----eCC-----CcEEEEE
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITG-----SAD-----QTAKLWN 80 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~-----s~D-----~~v~vWd 80 (313)
.++...++|++|++++- +.+..++|++...+..+.+...- .+..+.|+|.+++|.|- -.| .-+++|+
T Consensus 35 ~~~~v~~~S~~G~lfA~-~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ 111 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAY-SDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN 111 (566)
T ss_pred CcceeEEEcCCCcEEEE-EcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence 34567889999987774 55678999998888654444432 78899999999887661 122 3466999
Q ss_pred CCCCeEEEEecCCC-CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC-
Q 021399 81 VETGAQLFTFNFDS-PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN- 158 (313)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 158 (313)
++++.....+.... ..-...|+.++.+++-....... ..++.. ......+-|...|....++|..
T Consensus 112 vet~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~------f~~~~~-------f~~~~~kl~~~~i~~f~lSpgp~ 178 (566)
T KOG2315|consen 112 VETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQ------FYDLGS-------FKTIQHKLSVSGITMLSLSPGPE 178 (566)
T ss_pred eccceehhheehhhhcCcccccccchhhhhhhhcceEE------EEecCC-------ccceeeeeeccceeeEEecCCCC
Confidence 88854333222111 11344566665554332222211 111110 0111122345677788888763
Q ss_pred -CEEEE-----eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCE---EEEeeCC---------CcEEEEEC
Q 021399 159 -RTIIS-----AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH---FLTGSLD---------KSAKLWDA 220 (313)
Q Consensus 159 -~~i~t-----~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~---l~s~s~d---------g~i~iwd~ 220 (313)
..+++ .|.-..++||-..-...-+.+...+-...+--.+.|.+-|.- |++...| .++++.++
T Consensus 179 ~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t 258 (566)
T KOG2315|consen 179 PPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLAT 258 (566)
T ss_pred CceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEe
Confidence 23332 355567999976421111111000001122233445555542 2222233 35777777
Q ss_pred CCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCC------------------------------Cceee
Q 021399 221 RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA------------------------------GKFEA 270 (313)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~ 270 (313)
+...+...+....+|.++.|+|.+...++.-|.--..+.++|.+. -...+
T Consensus 259 ~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~m 338 (566)
T KOG2315|consen 259 QGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDM 338 (566)
T ss_pred cCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCce
Confidence 755565666667788888888888766655433223333444332 01245
Q ss_pred eeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 271 KFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
.+||....+.+..+.+-... -.+|+|||+.|--
T Consensus 339 EvwDv~n~K~i~~~~a~~tt--~~eW~PdGe~flT 371 (566)
T KOG2315|consen 339 EVWDVPNRKLIAKFKAANTT--VFEWSPDGEYFLT 371 (566)
T ss_pred EEEeccchhhccccccCCce--EEEEcCCCcEEEE
Confidence 68998888888888765444 4789999999743
No 246
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=8.1e-11 Score=101.31 Aligned_cols=177 Identities=18% Similarity=0.283 Sum_probs=125.4
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC-------CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEE
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAK 77 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~-------~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~ 77 (313)
-+.||...|..+.--.+.+-++++|.|++|++|.++. ..+..++.+|+.+|..+.|-.+.+.+++ .||-+.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giH 807 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIH 807 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcce
Confidence 4678999988876666778899999999999998763 3366788999999999999988877764 588999
Q ss_pred EEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (313)
Q Consensus 78 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (313)
+||+--+....... + .+....+..++.++.....
T Consensus 808 lWDPFigr~Laq~~---------d----------------------------apk~~a~~~ikcl~nv~~~--------- 841 (1034)
T KOG4190|consen 808 LWDPFIGRLLAQME---------D----------------------------APKEGAGGNIKCLENVDRH--------- 841 (1034)
T ss_pred eecccccchhHhhh---------c----------------------------CcccCCCceeEecccCcch---------
Confidence 99976543321000 0 0000111122222211111
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeeccc--ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 158 NRTIISAGEDAIVRIWDTETGKLLKESDK--ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
-.++.|+...+++++|.++..-..+... ..+-+..+++++..+.|+.++.+-..|.|-+.|.++|+.+..+.
T Consensus 842 -iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 842 -ILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred -heeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 1345567889999999887654444332 24556789999999999999999999999999999999887653
No 247
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.18 E-value=2.2e-09 Score=86.52 Aligned_cols=83 Identities=18% Similarity=0.369 Sum_probs=75.3
Q ss_pred CcccccccccceeEEEEccCCCEEEEeeCCCC-eEEEeCCCCcEEEEecC--CCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399 2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHT-PTVWFADNGERLGTYRG--HNGAVWCCDVSRDSMTLITGSADQTAKL 78 (313)
Q Consensus 2 ~~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~-i~iw~~~~~~~~~~~~~--H~~~V~~~~~~~~~~~l~s~s~D~~v~v 78 (313)
.|.+..+|...|.|++.+.+|.++||+|..|+ |||||..+|+.+.+++. -...|.+++|||+..+|+.+|..||+.|
T Consensus 173 ~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHi 252 (346)
T KOG2111|consen 173 APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHI 252 (346)
T ss_pred CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEE
Confidence 47899999999999999999999999998876 78999999999999974 2357999999999999999999999999
Q ss_pred EECCCC
Q 021399 79 WNVETG 84 (313)
Q Consensus 79 Wd~~~~ 84 (313)
+.++..
T Consensus 253 F~l~~~ 258 (346)
T KOG2111|consen 253 FSLRDT 258 (346)
T ss_pred EEeecC
Confidence 998764
No 248
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.15 E-value=9.4e-11 Score=98.65 Aligned_cols=214 Identities=17% Similarity=0.256 Sum_probs=153.2
Q ss_pred EEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCC
Q 021399 56 WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 135 (313)
Q Consensus 56 ~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (313)
..+.++.+|+.++-|++-|.+-.+|-.+++..+.+.....+..+.|...+++.++.......+ ++ ..
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yv----------YD---~~ 199 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYV----------YD---NN 199 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEE----------ec---CC
Confidence 457888899999999999999999999999988887777777777765555444433221111 11 11
Q ss_pred CceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcE
Q 021399 136 GESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 215 (313)
Q Consensus 136 ~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i 215 (313)
+..+.+++- ..++..+.|-|..-.+++++..|.++--|+..|+++..+.. ..+.+..++-.|-+..+-+|...|+|
T Consensus 200 GtElHClk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t---~~G~~~vm~qNP~NaVih~GhsnGtV 275 (545)
T KOG1272|consen 200 GTELHCLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT---GAGRTDVMKQNPYNAVIHLGHSNGTV 275 (545)
T ss_pred CcEEeehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc---cCCccchhhcCCccceEEEcCCCceE
Confidence 222223332 23567777888878899999999999999999998766542 34567777788888889999999999
Q ss_pred EEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEE
Q 021399 216 KLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 294 (313)
Q Consensus 216 ~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 294 (313)
.+|...+.+++..+. +..++.++++.|.|.+++++|-+. . +++||+.....++.... .-+...+
T Consensus 276 SlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr--~------------~kIWDlR~~~ql~t~~t-p~~a~~l 340 (545)
T KOG1272|consen 276 SLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDR--K------------VKIWDLRNFYQLHTYRT-PHPASNL 340 (545)
T ss_pred EecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccccc--c------------eeEeeeccccccceeec-CCCcccc
Confidence 999999988876664 677999999999999999887543 2 34555543333333322 3456777
Q ss_pred EECCCCC
Q 021399 295 AFNPDGK 301 (313)
Q Consensus 295 ~fspdgk 301 (313)
+||.-|-
T Consensus 341 s~Sqkgl 347 (545)
T KOG1272|consen 341 SLSQKGL 347 (545)
T ss_pred ccccccc
Confidence 7776543
No 249
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.14 E-value=4.5e-10 Score=90.89 Aligned_cols=143 Identities=16% Similarity=0.199 Sum_probs=95.5
Q ss_pred EEEEccCCCEEEE-eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEE-EEeeCCCcEEEEECCCCcEEEE
Q 021399 151 RAVWGPLNRTIIS-AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELIKT 228 (313)
Q Consensus 151 ~~~~~~~~~~i~t-~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~ 228 (313)
.+.|..+..++++ ...++.|.+|++....-.+.+. .....+.+.+|||||.+| .+...|-.|.+|.+.+.++...
T Consensus 53 yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId---eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~ 129 (447)
T KOG4497|consen 53 YIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID---EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL 129 (447)
T ss_pred heeeeccceeeeeeeeccceEEEEEeecceeEEEec---cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe
Confidence 3445555555554 4678899999998776555543 235678899999999654 5566799999999999887655
Q ss_pred EecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399 229 YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 229 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~ 307 (313)
......+..++|+|+++..++....|...++ .++....-..++.+.--.-..+.|.|||||..+|..+
T Consensus 130 ~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv-----------~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd 197 (447)
T KOG4497|consen 130 PHPKTNVKGYAFHPDGQFCAILSRRDCKDYV-----------QISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWD 197 (447)
T ss_pred cccccCceeEEECCCCceeeeeecccHHHHH-----------HHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEec
Confidence 4445567899999999988887654432211 1111112223344444455667888888888887654
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.14 E-value=1.2e-06 Score=74.68 Aligned_cols=256 Identities=13% Similarity=0.071 Sum_probs=131.0
Q ss_pred CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeC----------CCcEEEEECCCCeEEEEecCCCCe-----
Q 021399 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA----------DQTAKLWNVETGAQLFTFNFDSPA----- 96 (313)
Q Consensus 32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~----------D~~v~vWd~~~~~~~~~~~~~~~~----- 96 (313)
++|.+.|.++.+.+.++..-..+-. + ++||++.++.+.. +..|.+||+.+.+.+..+......
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~-~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP-V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce-e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 8999999999999988875333332 4 8999987766654 899999999999988776653332
Q ss_pred ---eEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEE
Q 021399 97 ---RSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI 172 (313)
Q Consensus 97 ---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~l 172 (313)
..+.++++++.+.+.. ++... ..+.++. .++.+..+.-+.. ..+.-.+....++- +.||....
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~----V~VvD~~------~~kvv~ei~vp~~--~~vy~t~e~~~~~~-~~Dg~~~~ 171 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPA----VGVVDLE------GKAFVRMMDVPDC--YHIFPTANDTFFMH-CRDGSLAK 171 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCE----EEEEECC------CCcEEEEEeCCCC--cEEEEecCCccEEE-eecCceEE
Confidence 2667888887766543 21111 1111111 1111111111110 00101111111111 22333322
Q ss_pred EECCC-Ccee-eecccccCceeceEE-EEECC-CCCEEEEeeCCCcEEEEECC-----CCcEEEEEecC--------Cce
Q 021399 173 WDTET-GKLL-KESDKETGHKKTITS-LAKAA-DGSHFLTGSLDKSAKLWDAR-----TLELIKTYVTE--------RPV 235 (313)
Q Consensus 173 wd~~~-~~~~-~~~~~~~~h~~~v~~-~~~s~-~~~~l~s~s~dg~i~iwd~~-----~~~~~~~~~~~--------~~~ 235 (313)
..+.. ++.. .......+....+.. -.+.+ +|..+..... |+|.+.|+. ..+.+..+... ...
T Consensus 172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~ 250 (352)
T TIGR02658 172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW 250 (352)
T ss_pred EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence 22211 1111 000000000000000 02344 7777666665 999999954 33443333211 112
Q ss_pred eEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
.-++++|+++.++++.-... -+-+..+.-++..+|..+.+.+..+.. ...++.++|+||||...|...
T Consensus 251 q~ia~~~dg~~lyV~~~~~~----~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 251 QQVAYHRARDRIYLLADQRA----KWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALS 318 (352)
T ss_pred eeEEEcCCCCEEEEEecCCc----cccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeC
Confidence 23888999888887421111 011222233556667666666555432 458899999999996666554
No 251
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.13 E-value=4.8e-10 Score=99.55 Aligned_cols=238 Identities=16% Similarity=0.244 Sum_probs=159.9
Q ss_pred Cccccccccc-ceeEEEEccCC---CEEEEeeCCCCeEEEeCCCC---cEEEEecCCCCceEEEEECCCC-CeEEEeeCC
Q 021399 2 RPILMKGHER-PLTYLKYNKDG---DLLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDS-MTLITGSAD 73 (313)
Q Consensus 2 ~~~~l~~h~~-~v~~~~fs~~g---~~l~s~s~d~~i~iw~~~~~---~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D 73 (313)
+|+.|+.-+. .|-.+.|+|.. ..+++.+.-+ -.+|+++.. ..--.+.+|..+|+.+.|+|.. ..+++++.|
T Consensus 58 ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qk-aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvd 136 (1081)
T KOG0309|consen 58 PPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQK-AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVD 136 (1081)
T ss_pred CceeeeccCcchhcceecccCCCCceeEEecCcch-hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecccc
Confidence 4555554333 35678888764 3677766544 467988754 2344678999999999999865 489999999
Q ss_pred CcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399 74 QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (313)
Q Consensus 74 ~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (313)
-.+..||+++... +..+. ..-......+.
T Consensus 137 t~vh~wd~rSp~~--------p~ys~-------------------------------------------~~w~s~asqVk 165 (1081)
T KOG0309|consen 137 TYVHAWDMRSPHR--------PFYST-------------------------------------------SSWRSAASQVK 165 (1081)
T ss_pred ccceeeeccCCCc--------ceeee-------------------------------------------ecccccCceee
Confidence 9999999886432 11000 00112234566
Q ss_pred EccCCCEEEEeeCCCeEEEEECCCCce-eeecccccCceeceEEEEECC-CCCEEEEeeCCCcEEEEECCC--CcEEEEE
Q 021399 154 WGPLNRTIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDART--LELIKTY 229 (313)
Q Consensus 154 ~~~~~~~i~t~~~d~~i~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd~~~--~~~~~~~ 229 (313)
|+.....++..+....|++||.+.+.. +.... +|-..+..++|.. ....+.+.+.|++|+.||-.. .+.-+..
T Consensus 166 wnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K---~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v 242 (1081)
T KOG0309|consen 166 WNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLK---GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV 242 (1081)
T ss_pred ecccCcchhhhccCCceEEEeccCCCcceEEec---ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec
Confidence 665555666677778899999987654 33332 4777777777653 234589999999999999764 3444555
Q ss_pred ecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEE
Q 021399 230 VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 296 (313)
Q Consensus 230 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~f 296 (313)
....++-.-.+-|.++..++-..-+++.+-..+.+.-..++..+|. .++++.+.||...|...-|
T Consensus 243 tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~--~~pVh~F~GH~D~V~eFlW 307 (1081)
T KOG0309|consen 243 TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL--NTPVHTFVGHDDVVLEFLW 307 (1081)
T ss_pred cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccC--CcceeeecCcchHHHHHhh
Confidence 5566777777889998887765555566666666665555555554 4567889999888765443
No 252
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=5.6e-10 Score=94.60 Aligned_cols=218 Identities=17% Similarity=0.265 Sum_probs=142.1
Q ss_pred cccccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcEEE---EecCCCC---ceEEEEECCCCC-eEEEeeCCC
Q 021399 3 PILMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLG---TYRGHNG---AVWCCDVSRDSM-TLITGSADQ 74 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~---~~~~H~~---~V~~~~~~~~~~-~l~s~s~D~ 74 (313)
+..+..|.++|+-++.-|+. ..|.|++.|+.+.=.|+..+..-. .-+.+.. ....++.+|.+. .|++++.|.
T Consensus 225 t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dq 304 (559)
T KOG1334|consen 225 TKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQ 304 (559)
T ss_pred ceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhh
Confidence 45677899999999999876 589999999999988887664322 2234444 457889998765 899999999
Q ss_pred cEEEEECCCCeEE------EEe-------cCCCCeeEEEee-cCCeEEEEECCCceeccccceeeeeeeCCCCC-CCceE
Q 021399 75 TAKLWNVETGAQL------FTF-------NFDSPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQ-GGESV 139 (313)
Q Consensus 75 ~v~vWd~~~~~~~------~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 139 (313)
.++++|.+.-... ..+ .....+.++.++ .+..+.+...+..+-+.......--..++... .....
T Consensus 305 f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k 384 (559)
T KOG1334|consen 305 FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVK 384 (559)
T ss_pred hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccc
Confidence 9999997643211 111 112234555566 33344443333222111110000000000000 01122
Q ss_pred EEecCCCCc--eEEEE-EccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEE
Q 021399 140 LILKGPQGR--INRAV-WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 216 (313)
Q Consensus 140 ~~~~~~~~~--i~~~~-~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~ 216 (313)
++.+||.+. |..+. |.|..+++++|++-|.|-+|+-++++.++-.. +-+..|+|+.-+|--..|||.+.|.-||
T Consensus 385 ~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me---gDr~VVNCLEpHP~~PvLAsSGid~DVK 461 (559)
T KOG1334|consen 385 RVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME---GDRHVVNCLEPHPHLPVLASSGIDHDVK 461 (559)
T ss_pred hhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh---cccceEeccCCCCCCchhhccCCcccee
Confidence 346777653 55555 46889999999999999999999888776443 3334899999999999999999999999
Q ss_pred EEECCCC
Q 021399 217 LWDARTL 223 (313)
Q Consensus 217 iwd~~~~ 223 (313)
||-..+.
T Consensus 462 IWTP~~~ 468 (559)
T KOG1334|consen 462 IWTPLTA 468 (559)
T ss_pred eecCCcc
Confidence 9987443
No 253
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.11 E-value=1.2e-07 Score=81.17 Aligned_cols=235 Identities=20% Similarity=0.297 Sum_probs=143.3
Q ss_pred cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCc-------------
Q 021399 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT------------- 75 (313)
Q Consensus 9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~------------- 75 (313)
-.-++..++|||.|.+|++...- -|.+|+......+..+. ...|.-+.|+|.+++|.|-+..+.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~ 107 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK 107 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence 44567889999999999977664 56889887776555554 457889999999999999776544
Q ss_pred --EEEEECCCCeEEEEecCCCCe----eEEEeecCCeEEEE---------E-CCCceec----cccceeeeeeeCCC---
Q 021399 76 --AKLWNVETGAQLFTFNFDSPA----RSVDFAVGDKLAVI---------T-TDPFMEL----NSAIHVKRIARDPA--- 132 (313)
Q Consensus 76 --v~vWd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---------~-~~~~~~~----~~~~~~~~~~~~~~--- 132 (313)
+.+||+.++..+..+...... ..+.|+.+++.++- - ++..... .....+.+....+.
T Consensus 108 n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~ 187 (561)
T COG5354 108 NNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNH 187 (561)
T ss_pred CceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCCCC
Confidence 999999999888776543222 13344444332211 1 1111000 00000111111111
Q ss_pred ----------CCCCceEEEecCCCCce-----------EEEEEccCCCEEEEee-----------CCCeEEEEECCCCce
Q 021399 133 ----------DQGGESVLILKGPQGRI-----------NRAVWGPLNRTIISAG-----------EDAIVRIWDTETGKL 180 (313)
Q Consensus 133 ----------~~~~~~~~~~~~~~~~i-----------~~~~~~~~~~~i~t~~-----------~d~~i~lwd~~~~~~ 180 (313)
......+..+.-+.+.+ ..+.|++.|++++.-- ....++|+++.....
T Consensus 188 ~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i 267 (561)
T COG5354 188 DELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI 267 (561)
T ss_pred ceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc
Confidence 00111122222222211 2466888888765421 124578888763322
Q ss_pred eeecccccCceeceEEEEECCCCCEEEEee--CCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEccc
Q 021399 181 LKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 181 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 252 (313)
+ +. ..-.+.|..++|.|.++.++..+ .+-.+.++|++.. ++-+..++.-+.+.|+|...+++++|-
T Consensus 268 -~-V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF 335 (561)
T COG5354 268 -P-VE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGF 335 (561)
T ss_pred -c-ee--ccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecC
Confidence 1 11 13467899999999988866544 6888999999876 444456677899999999999988753
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.10 E-value=1.6e-06 Score=74.98 Aligned_cols=237 Identities=14% Similarity=0.171 Sum_probs=140.1
Q ss_pred ceeEEEEccCCCEEEEeeC----CCCeEEEeCCCC--c--EEEEecCCCCceEEEEECCCCCeEEEee-CCCcEEEEECC
Q 021399 12 PLTYLKYNKDGDLLFSCAK----DHTPTVWFADNG--E--RLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVE 82 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~----d~~i~iw~~~~~--~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~v~vWd~~ 82 (313)
....++++|++++|++... ++.|..|.+... + .+.+.......-..++++|++++++++. .+|+|.++++.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~ 117 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLD 117 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEcc
Confidence 4567899999999999877 468888877654 3 3333432333445689999999888876 58999999997
Q ss_pred C-CeEEEE---ec-----------CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec-CCC
Q 021399 83 T-GAQLFT---FN-----------FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GPQ 146 (313)
Q Consensus 83 ~-~~~~~~---~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 146 (313)
. +..... .. .....+.+.+.|+++.+++..-. ...+...++.. ....-.....+. ...
T Consensus 118 ~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG----~D~v~~~~~~~--~~~~l~~~~~~~~~~G 191 (345)
T PF10282_consen 118 DDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG----ADRVYVYDIDD--DTGKLTPVDSIKVPPG 191 (345)
T ss_dssp TTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT----TTEEEEEEE-T--TS-TEEEEEEEECSTT
T ss_pred CCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC----CCEEEEEEEeC--CCceEEEeeccccccC
Confidence 6 433221 21 12346778888887766553211 11111222211 100001111122 122
Q ss_pred CceEEEEEccCCCEE-EEeeCCCeEEEEECC--CCce--eeecccc-cC--ceeceEEEEECCCCCEEEEee-CCCcEEE
Q 021399 147 GRINRAVWGPLNRTI-ISAGEDAIVRIWDTE--TGKL--LKESDKE-TG--HKKTITSLAKAADGSHFLTGS-LDKSAKL 217 (313)
Q Consensus 147 ~~i~~~~~~~~~~~i-~t~~~d~~i~lwd~~--~~~~--~~~~~~~-~~--h~~~v~~~~~s~~~~~l~s~s-~dg~i~i 217 (313)
..-..+.|+|+++++ ++...++.|.++++. .+.. ++.+... .+ .......++++|||++|..+. ..+.|.+
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 345678899998876 445567889999877 3322 2222111 01 122578899999999977766 4678999
Q ss_pred EECC--CCc--EEEEEec-CCceeEEEeccCCCEEEEccccc
Q 021399 218 WDAR--TLE--LIKTYVT-ERPVNAVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 218 wd~~--~~~--~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~ 254 (313)
|+++ +++ .+..+.. ....+.++++|+++.++++...+
T Consensus 272 f~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s 313 (345)
T PF10282_consen 272 FDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS 313 (345)
T ss_dssp EEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT
T ss_pred EEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC
Confidence 9983 333 3333433 33478999999999999875443
No 255
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.10 E-value=6.8e-09 Score=85.16 Aligned_cols=186 Identities=16% Similarity=0.197 Sum_probs=117.3
Q ss_pred ceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCC
Q 021399 54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 133 (313)
Q Consensus 54 ~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (313)
.+..++|++.-..|+.+..|-.|+++|-.+ ++..++..
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks----------------------------------------- 137 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKS----------------------------------------- 137 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecc-----------------------------------------
Confidence 456688888656788888999999988554 21111100
Q ss_pred CCCceEEEecCCCCceEEEEEccCCC-EEEEeeCCCeEEEEECCCCceee-----------ecccccCceeceEEEEECC
Q 021399 134 QGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLK-----------ESDKETGHKKTITSLAKAA 201 (313)
Q Consensus 134 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~i~t~~~d~~i~lwd~~~~~~~~-----------~~~~~~~h~~~v~~~~~s~ 201 (313)
..+..+.+++|-|.+. .++.|... -|.+|.....-... .+....+| ..|+++.|.+
T Consensus 138 ----------~sQrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~ 205 (445)
T KOG2139|consen 138 ----------VSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE 205 (445)
T ss_pred ----------hhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC
Confidence 0123567777877653 45666654 48899753211111 11122344 6799999999
Q ss_pred CCCEEEEeeC-CCcEEEEECCCCcEEEEE-ecCCceeEEEeccCCCEEEEcccccCceeEee-ccCCCceeeeeeehhhh
Q 021399 202 DGSHFLTGSL-DKSAKLWDARTLELIKTY-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTT-DHRAGKFEAKFFDKILQ 278 (313)
Q Consensus 202 ~~~~l~s~s~-dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 278 (313)
||..+++++. |..|.|||..++.++.-. .....+.-+-|+|+++.++++.-+ . .+.+| ..+ .|-.+.
T Consensus 206 dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d-a-vfrlw~e~q-------~wt~er- 275 (445)
T KOG2139|consen 206 DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD-A-VFRLWQENQ-------SWTKER- 275 (445)
T ss_pred CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc-c-eeeeehhcc-------cceecc-
Confidence 9999999986 567999999998876554 334456678999999998876432 2 22233 111 111110
Q ss_pred hhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 279 EEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 279 ~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
+. .-++.|....|+|+|+.+-|-..
T Consensus 276 ---w~--lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 276 ---WI--LGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred ---ee--ccCCceeeeeecCCCCEEEEEEc
Confidence 11 12568999999999999766543
No 256
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.10 E-value=8.7e-09 Score=96.42 Aligned_cols=203 Identities=16% Similarity=0.157 Sum_probs=127.1
Q ss_pred CCcEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceecc
Q 021399 41 NGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 119 (313)
Q Consensus 41 ~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (313)
.|..+..+..|+..|..++.++.. .+|+|||.||+||+||...-..-. ......+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~----~s~rS~l-------------------- 1092 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG----GSARSEL-------------------- 1092 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc----ceeeeeE--------------------
Confidence 567888899999999999887654 899999999999999976422100 0000000
Q ss_pred ccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCC--Cce-e--eecccccCcee-c
Q 021399 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTET--GKL-L--KESDKETGHKK-T 193 (313)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~--~~~-~--~~~~~~~~h~~-~ 193 (313)
...--.+++..+...+.+..+|.++.||.|++.++.. ... . +.........+ .
T Consensus 1093 ---------------------tys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~v 1151 (1431)
T KOG1240|consen 1093 ---------------------TYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVV 1151 (1431)
T ss_pred ---------------------EEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCce
Confidence 0000124556666777788999999999999998764 111 1 11111111122 2
Q ss_pred eEEEEECC-CCC-EEEEeeCCCcEEEEECCCCcEEEEEe---cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCce
Q 021399 194 ITSLAKAA-DGS-HFLTGSLDKSAKLWDARTLELIKTYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 268 (313)
Q Consensus 194 v~~~~~s~-~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (313)
+...++.. .++ .++.+..-+.|..||+++......+. .++.+.+++.+|.+..+++|.. .+.+..||.|.+..
T Consensus 1152 v~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts--~G~l~lWDLRF~~~ 1229 (1431)
T KOG1240|consen 1152 VSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTS--RGQLVLWDLRFRVP 1229 (1431)
T ss_pred EEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecC--CceEEEEEeecCce
Confidence 33334432 233 67788888899999999877665553 3457899999999997777543 34577888776543
Q ss_pred eeeeeehhhhhhhccccccccceeEEEECCCCC
Q 021399 269 EAKFFDKILQEEIGGVKGHFGPINALAFNPDGK 301 (313)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk 301 (313)
+..|.. .|..+|..+..+|--+
T Consensus 1230 -i~sw~~----------P~~~~i~~v~~~~~~~ 1251 (1431)
T KOG1240|consen 1230 -ILSWEH----------PARAPIRHVWLCPTYP 1251 (1431)
T ss_pred -eecccC----------cccCCcceEEeeccCC
Confidence 344432 2335555555555433
No 257
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.09 E-value=1.2e-06 Score=74.88 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=76.8
Q ss_pred eeceEEEEECCCCCEEEEeeCCC-cEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCcee
Q 021399 191 KKTITSLAKAADGSHFLTGSLDK-SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE 269 (313)
Q Consensus 191 ~~~v~~~~~s~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (313)
.+.|+=..+..+++-++.|..|| .+-++|.++++..+....-..+.++..+|+|..++++- + +++
T Consensus 359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN--d------------r~e 424 (668)
T COG4946 359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN--D------------RFE 424 (668)
T ss_pred CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc--C------------ceE
Confidence 33444445566666788899998 89999999988766555566799999999999877753 2 345
Q ss_pred eeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEEEEee
Q 021399 270 AKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQINV 312 (313)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~~~~~ 312 (313)
+...|..+++...--+..-+-|+..+|||+++.+||-+--+|+
T Consensus 425 l~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~ 467 (668)
T COG4946 425 LWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYY 467 (668)
T ss_pred EEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCccee
Confidence 5555555444322223345789999999999999998765543
No 258
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.08 E-value=3.7e-10 Score=64.18 Aligned_cols=38 Identities=32% Similarity=0.576 Sum_probs=36.4
Q ss_pred cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399 43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (313)
Q Consensus 43 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd 80 (313)
+++.++++|.++|++++|+|+++.|+|++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 259
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=7.8e-08 Score=83.22 Aligned_cols=269 Identities=13% Similarity=0.179 Sum_probs=155.9
Q ss_pred ceeEEEEccCCCEEEEeeC-----------CCCeEEEeCCCCcEEEEecC--CCCceEE-EEECCCCCeEEEeeCCCcEE
Q 021399 12 PLTYLKYNKDGDLLFSCAK-----------DHTPTVWFADNGERLGTYRG--HNGAVWC-CDVSRDSMTLITGSADQTAK 77 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~-----------d~~i~iw~~~~~~~~~~~~~--H~~~V~~-~~~~~~~~~l~s~s~D~~v~ 77 (313)
.|..+.|||..++|+|=|. ...++|||+.+|...+.|.. -...+|. ..||.|++++|--.. ..|.
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sis 329 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSIS 329 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEE
Confidence 4788999999999999653 26789999999999888876 3344554 579999998875444 5788
Q ss_pred EEECCCCeEEEEecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 78 LWNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 78 vWd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
|++..+..+.-.... ...+..+.|+|.+.+++..+...........+..+.. ...+..-.-++-.=..+-|..
T Consensus 330 IyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs------~~~iRt~nlfnVsDckLhWQk 403 (698)
T KOG2314|consen 330 IYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPS------KREIRTKNLFNVSDCKLHWQK 403 (698)
T ss_pred EEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCc------cceeeeccceeeeccEEEecc
Confidence 998766443322222 3456778889988877765543221111111111111 111111111111112234566
Q ss_pred CCCEEEE----------eeCCCeEEEEECCCCce-eeecccccCceeceEEEEECCCCCEEEEeeC---CCcEEEEECCC
Q 021399 157 LNRTIIS----------AGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDART 222 (313)
Q Consensus 157 ~~~~i~t----------~~~d~~i~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---dg~i~iwd~~~ 222 (313)
+|.+++. .|.-..+.|+.++.+.. +..+ .-+..|.+.+|-|.|+.++.-+. ..++.+|-+++
T Consensus 404 ~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v----elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 404 SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV----ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET 479 (698)
T ss_pred CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee----ecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence 6666553 12222355665543321 1111 23567899999999998776553 45688887774
Q ss_pred C----cEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehh--hhhhhccccccccceeEEEE
Q 021399 223 L----ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI--LQEEIGGVKGHFGPINALAF 296 (313)
Q Consensus 223 ~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~V~~~~f 296 (313)
. +++.++ .....+.+.|+|.|..+++++--. + .....|+|.. ..+..+.. .|. .-+.+.|
T Consensus 480 ~~~~~~lVk~~-dk~~~N~vfwsPkG~fvvva~l~s---------~--~g~l~F~D~~~a~~k~~~~~-eh~-~at~veW 545 (698)
T KOG2314|consen 480 NIKKPSLVKEL-DKKFANTVFWSPKGRFVVVAALVS---------R--RGDLEFYDTDYADLKDTASP-EHF-AATEVEW 545 (698)
T ss_pred CCCchhhhhhh-cccccceEEEcCCCcEEEEEEecc---------c--ccceEEEecchhhhhhccCc-ccc-ccccceE
Confidence 2 233333 235688999999999888764211 1 1123455543 22222221 243 3478899
Q ss_pred CCCCCeeEE
Q 021399 297 NPDGKRYGF 305 (313)
Q Consensus 297 spdgk~~~~ 305 (313)
.|.||++.=
T Consensus 546 DPtGRYvvT 554 (698)
T KOG2314|consen 546 DPTGRYVVT 554 (698)
T ss_pred CCCCCEEEE
Confidence 999999653
No 260
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=1.1e-07 Score=78.78 Aligned_cols=228 Identities=14% Similarity=0.126 Sum_probs=141.5
Q ss_pred cceeEEEEccC--CCEEEEeeCCCCeEEEeCCCCcEEEE------ecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 11 RPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGERLGT------YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 11 ~~v~~~~fs~~--g~~l~s~s~d~~i~iw~~~~~~~~~~------~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
..+..++|--+ .+.|..++.|..+............. ....+++|-.+... +..|++|-.+|.+++|...
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k 133 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRHDK 133 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEecc
Confidence 34556667544 45777777888888777666554332 23445566655543 3478899999999999987
Q ss_pred CCe----EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCC---------Cce
Q 021399 83 TGA----QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ---------GRI 149 (313)
Q Consensus 83 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~i 149 (313)
.+. ....+....+...+.-++....+++...... -....+|++... ..+-.-+... -.+
T Consensus 134 ~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~--~n~lkiwdle~~------~qiw~aKNvpnD~L~LrVPvW~ 205 (412)
T KOG3881|consen 134 SGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKEN--INELKIWDLEQS------KQIWSAKNVPNDRLGLRVPVWI 205 (412)
T ss_pred CCccccccceeeecCCceeeeccCCCCCceEecCchhc--ccceeeeecccc------eeeeeccCCCCccccceeeeee
Confidence 433 1222233334444444444333333222210 011122222111 0110000000 123
Q ss_pred EEEEEccC--CCEEEEeeCCCeEEEEECCCC-ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE
Q 021399 150 NRAVWGPL--NRTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226 (313)
Q Consensus 150 ~~~~~~~~--~~~i~t~~~d~~i~lwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 226 (313)
..+.|-+. ...|++++.-+.+|+||++.+ +++..+.. -...++++...|.+++|++|..-+.+..||+++++..
T Consensus 206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~---~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~ 282 (412)
T KOG3881|consen 206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF---LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL 282 (412)
T ss_pred ccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc---ccCcceeeeecCCCcEEEEecccchhheecccCceee
Confidence 56667666 678999999999999998754 34555442 3568999999999999999999999999999999887
Q ss_pred EEE-e-cCCceeEEEeccCCCEEEEcc
Q 021399 227 KTY-V-TERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 227 ~~~-~-~~~~~~~~~~~p~~~~~~~~~ 251 (313)
... . ..+.+..+-.+|....++.+|
T Consensus 283 g~~~kg~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 283 GCGLKGITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred ccccCCccCCcceEEEcCCCceEEeec
Confidence 663 2 246788999999887766554
No 261
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.03 E-value=1.4e-06 Score=71.88 Aligned_cols=251 Identities=14% Similarity=0.139 Sum_probs=146.4
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCC---CCeEEEeCCC--CcEE--EEecCCCCceEEEEECCCCCeEEEee-CCCc
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKD---HTPTVWFADN--GERL--GTYRGHNGAVWCCDVSRDSMTLITGS-ADQT 75 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d---~~i~iw~~~~--~~~~--~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~ 75 (313)
+.+..+...++-++|+|+.++|+++-.+ |.|--|.++. |++- .....-..+-.-++++++|++++++. .-|.
T Consensus 33 ~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~ 112 (346)
T COG2706 33 LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGS 112 (346)
T ss_pred hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCce
Confidence 3455667778899999999999998654 6677776664 5432 11111122236689999999988886 3477
Q ss_pred EEEEECCC-CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE
Q 021399 76 AKLWNVET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (313)
Q Consensus 76 v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (313)
|.++-+.+ |....... .+ .... .+ +... --...+....+
T Consensus 113 v~v~p~~~dG~l~~~v~------~~-----------------------------~h~g--~~-p~~r--Q~~~h~H~a~~ 152 (346)
T COG2706 113 VSVYPLQADGSLQPVVQ------VV-----------------------------KHTG--SG-PHER--QESPHVHSANF 152 (346)
T ss_pred EEEEEcccCCcccccee------ee-----------------------------ecCC--CC-CCcc--ccCCccceeee
Confidence 77776643 22110000 00 0000 00 0000 00123667889
Q ss_pred ccCCCEEEEee-CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC-CCcEEEEECCCC-c---EEEE
Q 021399 155 GPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTL-E---LIKT 228 (313)
Q Consensus 155 ~~~~~~i~t~~-~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd~~~~-~---~~~~ 228 (313)
.|+++++++.. ..-+|.+|++..+++.........-....+.+.|+|++++...... +++|.+|..... . .++.
T Consensus 153 tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 153 TPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred CCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence 99999888774 3346899999987754332222233566789999999999887774 899999987763 2 2222
Q ss_pred Ee-------cCCceeEEEeccCCCEEEEcccc-cCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCC
Q 021399 229 YV-------TERPVNAVTMSPLLDHVVLGGGQ-DASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300 (313)
Q Consensus 229 ~~-------~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg 300 (313)
+. ......++.++|+|..++++-.. +...+..-|...+.++..-+- ..+...--+..|+|+|
T Consensus 233 i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~----------~teg~~PR~F~i~~~g 302 (346)
T COG2706 233 IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGIT----------PTEGQFPRDFNINPSG 302 (346)
T ss_pred eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEe----------ccCCcCCccceeCCCC
Confidence 21 12346678899999998887432 222222223333333321111 1122223566788888
Q ss_pred CeeE
Q 021399 301 KRYG 304 (313)
Q Consensus 301 k~~~ 304 (313)
+.+.
T Consensus 303 ~~Li 306 (346)
T COG2706 303 RFLI 306 (346)
T ss_pred CEEE
Confidence 7653
No 262
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=5.7e-08 Score=86.50 Aligned_cols=275 Identities=15% Similarity=0.175 Sum_probs=169.2
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE---------------EEEecCCCCceEEEEECCCCCeEEEeeCCCcE
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER---------------LGTYRGHNGAVWCCDVSRDSMTLITGSADQTA 76 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~---------------~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v 76 (313)
...|+.|+.+..+|+.|+.||.++|-.+.+.+. -.+++||.+.|..+.|+.+.+.|-|...+|.|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI 95 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence 468999999999999999999999996664321 13678999999999999999999999999999
Q ss_pred EEEECCCCeEEE-Eec--CCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEE
Q 021399 77 KLWNVETGAQLF-TFN--FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152 (313)
Q Consensus 77 ~vWd~~~~~~~~-~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (313)
.+|-+-.+.=.. ..+ ..+.+.++.|.. +.+++++..++...+-. ..-.+++. . .+++ .....+
T Consensus 96 iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs-vdGNRIwg-K---------eLkg--~~l~hv 162 (1189)
T KOG2041|consen 96 IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS-VDGNRIWG-K---------ELKG--QLLAHV 162 (1189)
T ss_pred EEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe-eccceecc-h---------hcch--heccce
Confidence 999874432100 001 112344555553 45555554443221110 01111110 0 0011 112357
Q ss_pred EEccCCCEEEEeeCCCeEEEEECCCCcee-----eeccc---ccCceeceEEEEE--------CCCCCEEEEeeCCCcEE
Q 021399 153 VWGPLNRTIISAGEDAIVRIWDTETGKLL-----KESDK---ETGHKKTITSLAK--------AADGSHFLTGSLDKSAK 216 (313)
Q Consensus 153 ~~~~~~~~i~t~~~d~~i~lwd~~~~~~~-----~~~~~---~~~h~~~v~~~~~--------s~~~~~l~s~s~dg~i~ 216 (313)
.|+++.+.++.+-..|.++++|.+-.-.+ +.+.. .+.....+..+.| -||...++.+...|.+.
T Consensus 163 ~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Q 242 (1189)
T KOG2041|consen 163 LWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQ 242 (1189)
T ss_pred eecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceeh
Confidence 79999888888888999999996532111 00110 0111112334443 36888899999999888
Q ss_pred EEECCC-CcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEE
Q 021399 217 LWDART-LELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 295 (313)
Q Consensus 217 iwd~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 295 (313)
|-.-+. .+++. +..+..+..+.|++.|..++++|-+.+.. .......+.|+. .-+..++.++--..-|+++.
T Consensus 243 iMR~eND~~Pvv-~dtgm~~vgakWnh~G~vLAvcG~~~da~-----~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~ls 315 (1189)
T KOG2041|consen 243 IMRSENDPEPVV-VDTGMKIVGAKWNHNGAVLAVCGNDSDAD-----EPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLS 315 (1189)
T ss_pred hhhhcCCCCCeE-EecccEeecceecCCCcEEEEccCccccc-----CccccceEEEec-cchhheEEEecCCceeeeeE
Confidence 764332 33322 22335677889999999888876443221 111112233432 34666666776678999999
Q ss_pred ECCCCCeeEEE
Q 021399 296 FNPDGKRYGFL 306 (313)
Q Consensus 296 fspdgk~~~~~ 306 (313)
|-..|-++|+-
T Consensus 316 WEg~gLriA~A 326 (1189)
T KOG2041|consen 316 WEGTGLRIAIA 326 (1189)
T ss_pred EcCCceEEEEE
Confidence 99888888764
No 263
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.00 E-value=8.2e-09 Score=85.71 Aligned_cols=85 Identities=24% Similarity=0.348 Sum_probs=68.4
Q ss_pred cCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (313)
Q Consensus 143 ~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (313)
-||-+-+..+.|+|++++|+++..|..||+-.......+.. ...||+.-|..++.-++ ..|+|+|-|+++++||.++
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies--fclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES--FCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh--hccccHhheeeeeeccC-ceeeecCCCCcEEEEeccc
Confidence 46777889999999999999999999999866543222222 23579999999998765 4599999999999999999
Q ss_pred CcEEEEEe
Q 021399 223 LELIKTYV 230 (313)
Q Consensus 223 ~~~~~~~~ 230 (313)
++++.++.
T Consensus 225 gk~L~t~d 232 (390)
T KOG3914|consen 225 GKLLDTCD 232 (390)
T ss_pred CCcccccc
Confidence 98876653
No 264
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=1.1e-09 Score=99.14 Aligned_cols=216 Identities=16% Similarity=0.175 Sum_probs=143.7
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeC--CCcEEEEECC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA--DQTAKLWNVE 82 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~--D~~v~vWd~~ 82 (313)
+++.|....+|++|+.+.++|+.|+..|.|+++++.+|.......+|..+|+-+.=+.+|..+++.+. .....+|++.
T Consensus 1096 ~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred hhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence 77889999999999999999999999999999999999988899999999998887778876655442 3356788875
Q ss_pred CC-eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 83 TG-AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 83 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
+- .....+. .-..+.|+.....-
T Consensus 1176 s~~~~~Hsf~--------------------------------------------------------ed~~vkFsn~~q~r 1199 (1516)
T KOG1832|consen 1176 STGGPRHSFD--------------------------------------------------------EDKAVKFSNSLQFR 1199 (1516)
T ss_pred cccCcccccc--------------------------------------------------------ccceeehhhhHHHH
Confidence 41 1111000 00011122111111
Q ss_pred EEeeCCCeEEEEECCCCceeeec-ccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEe
Q 021399 162 ISAGEDAIVRIWDTETGKLLKES-DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTM 240 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 240 (313)
+.|.......|||++++..+.+. ....+.+..-+...|+|+...|+ .|| .+||.+..+.+..+..-..-..-.|
T Consensus 1200 ~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~~G~F 1274 (1516)
T KOG1832|consen 1200 ALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYGGGGF 1274 (1516)
T ss_pred HhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhheecccccc
Confidence 22333355789999998877662 22222233346778999988776 344 3899998877766533222234568
Q ss_pred ccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302 (313)
Q Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~ 302 (313)
||.+..+++- ..+||..+.+.++.... -.-..+.|+..|..
T Consensus 1275 HP~g~eVIIN-------------------SEIwD~RTF~lLh~VP~--Ldqc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1275 HPSGNEVIIN-------------------SEIWDMRTFKLLHSVPS--LDQCAVTFNSTGDV 1315 (1516)
T ss_pred cCCCceEEee-------------------chhhhhHHHHHHhcCcc--ccceEEEeccCccc
Confidence 9998888763 24688888777654432 23367889888876
No 265
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.97 E-value=3.6e-06 Score=72.79 Aligned_cols=208 Identities=14% Similarity=0.166 Sum_probs=123.4
Q ss_pred eeEEEEccCCCEEEEee-CCCCeEEEeCCC-CcEEEE---ec----------CCCCceEEEEECCCCCeEEEee-CCCcE
Q 021399 13 LTYLKYNKDGDLLFSCA-KDHTPTVWFADN-GERLGT---YR----------GHNGAVWCCDVSRDSMTLITGS-ADQTA 76 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s-~d~~i~iw~~~~-~~~~~~---~~----------~H~~~V~~~~~~~~~~~l~s~s-~D~~v 76 (313)
.-.++++|++++|+++. .++.|.+++++. +..... +. .-.....++.++|++++++... ....|
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v 168 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRV 168 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEE
Confidence 35689999999999987 489999999987 433221 21 1123467899999999777654 34579
Q ss_pred EEEECCCCe--EEE----EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec----CCC
Q 021399 77 KLWNVETGA--QLF----TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK----GPQ 146 (313)
Q Consensus 77 ~vWd~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 146 (313)
.+|++.... ... ........+.+.|+++.+.+.+.... ...+...++.. .......+.... +..
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~----s~~v~v~~~~~--~~g~~~~~~~~~~~~~~~~ 242 (345)
T PF10282_consen 169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNEL----SNTVSVFDYDP--SDGSLTEIQTISTLPEGFT 242 (345)
T ss_dssp EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETT----TTEEEEEEEET--TTTEEEEEEEEESCETTSC
T ss_pred EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCC----CCcEEEEeecc--cCCceeEEEEeeecccccc
Confidence 999987654 322 22345667888999988777665431 11111111110 000000111111 111
Q ss_pred --CceEEEEEccCCCEEEEee-CCCeEEEEECC--CCceeeecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEEC
Q 021399 147 --GRINRAVWGPLNRTIISAG-EDAIVRIWDTE--TGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDA 220 (313)
Q Consensus 147 --~~i~~~~~~~~~~~i~t~~-~d~~i~lwd~~--~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~ 220 (313)
.....+.++|+++++.++. ..+.|.+|++. ++++ ..+..........+.++++|+|++|+++. .++.|.+|++
T Consensus 243 ~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 243 GENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL-TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp SSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE-EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred ccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce-EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 2467888999999876654 56789999983 3333 22222112234578999999999999887 4678999865
Q ss_pred --CCCcEEE
Q 021399 221 --RTLELIK 227 (313)
Q Consensus 221 --~~~~~~~ 227 (313)
+++.+..
T Consensus 322 d~~tG~l~~ 330 (345)
T PF10282_consen 322 DPDTGKLTP 330 (345)
T ss_dssp ETTTTEEEE
T ss_pred eCCCCcEEE
Confidence 5666543
No 266
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=2e-06 Score=76.01 Aligned_cols=180 Identities=11% Similarity=0.050 Sum_probs=109.9
Q ss_pred ceeEEEEccCCCE-EEEeeCC---CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeE-EEeeCCC--cEEEEECCCC
Q 021399 12 PLTYLKYNKDGDL-LFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQ--TAKLWNVETG 84 (313)
Q Consensus 12 ~v~~~~fs~~g~~-l~s~s~d---~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~--~v~vWd~~~~ 84 (313)
....-+|||||+. ++..+.+ ..|.++|+.+++..... ...+.+....|+|||+.+ ++.+.++ .|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5678999999985 6655544 45777788888654333 345566778899999754 4544443 3444455544
Q ss_pred eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
+...... +.+......|+|+|+.|+..
T Consensus 268 ~~~~LT~-----------------------------------------------------~~~~d~~p~~SPDG~~I~F~ 294 (419)
T PRK04043 268 TLTQITN-----------------------------------------------------YPGIDVNGNFVEDDKRIVFV 294 (419)
T ss_pred cEEEccc-----------------------------------------------------CCCccCccEECCCCCEEEEE
Confidence 3221100 00011123588888877665
Q ss_pred eC-CC--eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC---------CcEEEEECCCCcEEEEEecC
Q 021399 165 GE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---------KSAKLWDARTLELIKTYVTE 232 (313)
Q Consensus 165 ~~-d~--~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~ 232 (313)
++ .+ .|.+.|+..++..+ +.. .+. . ...|+|||+.|+-.+.. ..|.+.|+++++. +.+...
T Consensus 295 Sdr~g~~~Iy~~dl~~g~~~r-lt~-~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~ 367 (419)
T PRK04043 295 SDRLGYPNIFMKKLNSGSVEQ-VVF-HGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN 367 (419)
T ss_pred ECCCCCceEEEEECCCCCeEe-Ccc-CCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC
Confidence 53 22 57888887766433 221 111 1 24899999998877654 2678889888765 444433
Q ss_pred CceeEEEeccCCCEEEEccc
Q 021399 233 RPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 233 ~~~~~~~~~p~~~~~~~~~~ 252 (313)
.......|+|++..++.+..
T Consensus 368 ~~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 368 GVNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred CCcCCeEECCCCCEEEEEEc
Confidence 34446889999998877643
No 267
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=5.2e-07 Score=78.27 Aligned_cols=226 Identities=14% Similarity=0.144 Sum_probs=138.0
Q ss_pred eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC--eEEE-----eeCCCcEEEEECCCCeE
Q 021399 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM--TLIT-----GSADQTAKLWNVETGAQ 86 (313)
Q Consensus 14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~--~l~s-----~s~D~~v~vWd~~~~~~ 86 (313)
++..|++|..+ +.--..+.+.+|+....+.+ .-+-|...|..+.++|.++ .+++ .|.=..||||.+.....
T Consensus 129 W~~qfs~dEsl-~arlv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~ 206 (566)
T KOG2315|consen 129 WVPQFSIDESL-AARLVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ 206 (566)
T ss_pred cccccccchhh-hhhhhcceEEEEecCCccce-eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc
Confidence 57888887543 33334568899987763321 2223577888889998643 3333 45567799998763322
Q ss_pred EEEe----cCCCCeeEEEeecCC-eEEEEE-CC--Cce-eccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399 87 LFTF----NFDSPARSVDFAVGD-KLAVIT-TD--PFM-ELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (313)
Q Consensus 87 ~~~~----~~~~~~~~~~~~~~~-~~~~~~-~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (313)
-... .+..+-..+.|...+ .++++. ++ +.. ...+.-.++.+... +..+.+--...++|+++.|+|+
T Consensus 207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-----g~s~~V~L~k~GPVhdv~W~~s 281 (566)
T KOG2315|consen 207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-----GESVSVPLLKEGPVHDVTWSPS 281 (566)
T ss_pred cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEec-----CceEEEecCCCCCceEEEECCC
Confidence 1111 123334445555533 333332 21 111 11111122222211 2233333334789999999999
Q ss_pred CCEEEEee--CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC---CcEEEEECCCCcEEEEEecC
Q 021399 158 NRTIISAG--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYVTE 232 (313)
Q Consensus 158 ~~~i~t~~--~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~ 232 (313)
++.|+.+- -=-++.++|++- .++..+ -.+.=+++.|+|.|++|+.++.+ |.+-+||+.+.+++..+...
T Consensus 282 ~~EF~VvyGfMPAkvtifnlr~-~~v~df-----~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~ 355 (566)
T KOG2315|consen 282 GREFAVVYGFMPAKVTIFNLRG-KPVFDF-----PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAA 355 (566)
T ss_pred CCEEEEEEecccceEEEEcCCC-CEeEeC-----CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccC
Confidence 98887764 234688999863 444333 24556788999999999998875 78999999998888776543
Q ss_pred CceeEEEeccCCCEEEEcccc
Q 021399 233 RPVNAVTMSPLLDHVVLGGGQ 253 (313)
Q Consensus 233 ~~~~~~~~~p~~~~~~~~~~~ 253 (313)
...-.+|+|+|.+++++...
T Consensus 356 -~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 356 -NTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred -CceEEEEcCCCcEEEEEecc
Confidence 24557899999999987543
No 268
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.89 E-value=7e-08 Score=78.84 Aligned_cols=200 Identities=20% Similarity=0.316 Sum_probs=136.4
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCC----CCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeE
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFAD----NGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~----~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~ 86 (313)
.++.++.|.++...|+.|-..|++.-+.+. ....++....|...|..+-|+...+.+++.+.|..+.-=-.+.+..
T Consensus 69 ~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~ 148 (404)
T KOG1409|consen 69 SPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNR 148 (404)
T ss_pred CCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCc
Confidence 357889999999999999999999988544 3445666778999999999998888999999998774333333333
Q ss_pred EEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC
Q 021399 87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (313)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~ 166 (313)
+-.+.+..+.....+..+ .....+.... +...++. .....++..+.+|.+.+.+..|.|....+.+|..
T Consensus 149 lg~Y~~~~~~t~~~~d~~---~~fvGd~~gq----vt~lr~~----~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~ 217 (404)
T KOG1409|consen 149 LGGYNFETPASALQFDAL---YAFVGDHSGQ----ITMLKLE----QNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGAS 217 (404)
T ss_pred ccceEeeccCCCCceeeE---EEEecccccc----eEEEEEe----ecCCceEEEEcCcccceEEEEEcCCCcEEEeccc
Confidence 221111111100000000 1111111110 1111111 1223467788899999999999999999999999
Q ss_pred CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC
Q 021399 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 223 (313)
Q Consensus 167 d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~ 223 (313)
|..+-+||+--++-... ...+|...|.++...+-...++|++.||.|-+||++..
T Consensus 218 d~~vi~wdigg~~g~~~--el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 218 DHSVIMWDIGGRKGTAY--ELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred cCceEEEeccCCcceee--eeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 99999999864443221 22478999999998888889999999999999998643
No 269
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.88 E-value=2.3e-06 Score=68.73 Aligned_cols=210 Identities=17% Similarity=0.224 Sum_probs=121.4
Q ss_pred EEEccCCCEEEEeeCCCCeEEEeCCCC--cEEEEecCCC---CceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 16 LKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHN---GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 16 ~~fs~~g~~l~s~s~d~~i~iw~~~~~--~~~~~~~~H~---~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
++.+.+|+.||. -.|..|.|-..++. ..++...-.+ .+=..++||||+.+||-+.+.|+|+++|+...+ ++.+
T Consensus 3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVI 80 (282)
T ss_pred eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEEc
Confidence 556788988884 56777787766554 2223332222 234568999999999999999999999997643 3332
Q ss_pred cC--------CCCeeEEEeecCC-------eEEEEECCCceeccccceeeeeeeCC-CCCCCceEEEecC-CCCceEEEE
Q 021399 91 NF--------DSPARSVDFAVGD-------KLAVITTDPFMELNSAIHVKRIARDP-ADQGGESVLILKG-PQGRINRAV 153 (313)
Q Consensus 91 ~~--------~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~i~~~~ 153 (313)
.. ...+..+.|.+.. .++++.- .+.++...+.... ..........+.. +...|+.+.
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y------~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v 154 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINY------RGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV 154 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEec------cceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence 21 1223333333211 1111110 1111111111100 0011112223333 356789999
Q ss_pred EccCCCEEEEeeCC----C-------eEEEEECCCCceeee--------------------ccc------ccCceeceEE
Q 021399 154 WGPLNRTIISAGED----A-------IVRIWDTETGKLLKE--------------------SDK------ETGHKKTITS 196 (313)
Q Consensus 154 ~~~~~~~i~t~~~d----~-------~i~lwd~~~~~~~~~--------------------~~~------~~~h~~~v~~ 196 (313)
++|..+.++.||.. + -+..|.+-++.+.-. +.. .......|..
T Consensus 155 y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~k 234 (282)
T PF15492_consen 155 YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFK 234 (282)
T ss_pred EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEE
Confidence 99998888877631 1 255665433322111 000 0113467888
Q ss_pred EEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC
Q 021399 197 LAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233 (313)
Q Consensus 197 ~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 233 (313)
+..||||..||+...+|.|.+|++.+..+.+.+..++
T Consensus 235 mSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 235 MSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred EEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhh
Confidence 9999999999999999999999999988888776543
No 270
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=2.1e-06 Score=75.81 Aligned_cols=144 Identities=10% Similarity=0.033 Sum_probs=80.8
Q ss_pred EEEccCCCEEEEe-e--CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC-CC--cEEEEECCCCcE
Q 021399 152 AVWGPLNRTIISA-G--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK--SAKLWDARTLEL 225 (313)
Q Consensus 152 ~~~~~~~~~i~t~-~--~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-dg--~i~iwd~~~~~~ 225 (313)
..|+|+|+.++.. + .+..|.++|+..+.. +.+.. +........|+|||+.|+-.+. .+ .|.+.|+++++.
T Consensus 238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~---~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITN---YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred eEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEccc---CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 4577877766533 2 245688889877653 33322 2222334579999998776653 23 578889988776
Q ss_pred EEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 226 IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 226 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
.+...... . ...|+|+++.++......... ...+.+.+.+.|..++.. ..+.. .+......|+|||+.++|
T Consensus 314 ~rlt~~g~-~-~~~~SPDG~~Ia~~~~~~~~~-----~~~~~~~I~v~d~~~g~~-~~LT~-~~~~~~p~~SPDG~~I~f 384 (419)
T PRK04043 314 EQVVFHGK-N-NSSVSTYKNYIVYSSRETNNE-----FGKNTFNLYLISTNSDYI-RRLTA-NGVNQFPRFSSDGGSIMF 384 (419)
T ss_pred EeCccCCC-c-CceECCCCCEEEEEEcCCCcc-----cCCCCcEEEEEECCCCCe-EECCC-CCCcCCeEECCCCCEEEE
Confidence 44332221 2 248999999988765432110 000112333444332221 11211 122335789999999998
Q ss_pred EEE
Q 021399 306 LLL 308 (313)
Q Consensus 306 ~~~ 308 (313)
..-
T Consensus 385 ~~~ 387 (419)
T PRK04043 385 IKY 387 (419)
T ss_pred EEc
Confidence 753
No 271
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.87 E-value=5.8e-06 Score=79.65 Aligned_cols=224 Identities=16% Similarity=0.165 Sum_probs=129.2
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEE----eCCCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVW----FADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw----~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
.+.|.++.|-++...|+.+..+|.|.+. +..+.. .+..+ +..|.+++||||+++++-...++++.+-+ .+
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~v---d~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~ 150 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSV---DSGILAASWSPDEELLALVTGEGNLLLMT-RD 150 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEE---cCcEEEEEECCCcCEEEEEeCCCEEEEEe-cc
Confidence 4568889999999999999999999999 444332 33333 56899999999999999888888887764 21
Q ss_pred CeEEEEec----------------------C---------------------------CCCeeEEEeecCCeEEEEECCC
Q 021399 84 GAQLFTFN----------------------F---------------------------DSPARSVDFAVGDKLAVITTDP 114 (313)
Q Consensus 84 ~~~~~~~~----------------------~---------------------------~~~~~~~~~~~~~~~~~~~~~~ 114 (313)
.+.+.... + +.....++|..++++.+++.-.
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 22111100 0 0012233344444433332110
Q ss_pred ceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC---CCeEEEEECCCCceeeecccc-cCc
Q 021399 115 FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVRIWDTETGKLLKESDKE-TGH 190 (313)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~---d~~i~lwd~~~~~~~~~~~~~-~~h 190 (313)
. ..+..+.-++.. ..+......+.-.+--..++|.|.|+.||+... ...|..|+.+ |-.-.++... ...
T Consensus 231 ~--~~~~~R~iRVy~----ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~ 303 (928)
T PF04762_consen 231 P--ETGSRRVIRVYS----REGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPE 303 (928)
T ss_pred c--CCCceeEEEEEC----CCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCC
Confidence 0 000011111110 112222222211222346889999999998764 4557777743 3222233221 134
Q ss_pred eeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc--EEEEEe--cCCceeEEEeccCCC
Q 021399 191 KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE--LIKTYV--TERPVNAVTMSPLLD 245 (313)
Q Consensus 191 ~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~--~~~~~~~~~~~p~~~ 245 (313)
...|..++|++|+..||....|. |.+|-..... +.+++. ....+..+.|+|...
T Consensus 304 ~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p 361 (928)
T PF04762_consen 304 EEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKP 361 (928)
T ss_pred CceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCC
Confidence 56789999999999999877665 9999876632 233333 233455688888644
No 272
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.86 E-value=3.9e-09 Score=85.94 Aligned_cols=80 Identities=28% Similarity=0.457 Sum_probs=71.2
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
++.+|.+.+.+++|.+....|+||..|..+.+||+.-.+ ....+.+|.+.|..+..-+--+.+.|++.||.|.+|+.+-
T Consensus 192 ~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 192 TFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred EEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 688999999999999999999999999999999987554 4567889999999988877778899999999999999864
Q ss_pred C
Q 021399 84 G 84 (313)
Q Consensus 84 ~ 84 (313)
.
T Consensus 272 ~ 272 (404)
T KOG1409|consen 272 K 272 (404)
T ss_pred e
Confidence 3
No 273
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.85 E-value=5.6e-09 Score=59.24 Aligned_cols=35 Identities=29% Similarity=0.539 Sum_probs=33.4
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEe
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWF 38 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~ 38 (313)
.++++|.++|++++|+|++.+|++++.|+.|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 37899999999999999999999999999999997
No 274
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=1.4e-08 Score=82.94 Aligned_cols=142 Identities=18% Similarity=0.223 Sum_probs=97.3
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE----EEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCCC
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER----LGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~----~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
+..|.++.|...++.++.|...|.|-..|+....+ ...---|..+|+++..-. +++.|++.+.+|+|++||.+--
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~ 331 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT 331 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh
Confidence 44577889998899999999999999999886521 112224888999987554 6789999999999999998643
Q ss_pred eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEE--EEEccCCCEEE
Q 021399 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR--AVWGPLNRTII 162 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~i~ 162 (313)
++. ..++..+||-+.-.. +-..+....++
T Consensus 332 K~~-------------------------------------------------~~V~qYeGHvN~~a~l~~~v~~eeg~I~ 362 (425)
T KOG2695|consen 332 KCK-------------------------------------------------KSVMQYEGHVNLSAYLPAHVKEEEGSIF 362 (425)
T ss_pred hcc-------------------------------------------------cceeeeecccccccccccccccccceEE
Confidence 321 112233333322211 22345667889
Q ss_pred EeeCCCeEEEEECCCCceeeeccccc-CceeceEEEEEC
Q 021399 163 SAGEDAIVRIWDTETGKLLKESDKET-GHKKTITSLAKA 200 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~~~~~~~~~-~h~~~v~~~~~s 200 (313)
++|+|...|+|.++++.++++..... .-+..+.++++.
T Consensus 363 s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 363 SVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 99999999999999999988764321 122345555553
No 275
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=3.9e-06 Score=72.98 Aligned_cols=262 Identities=16% Similarity=0.211 Sum_probs=153.3
Q ss_pred eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC-----------CcEEEEECC
Q 021399 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-----------QTAKLWNVE 82 (313)
Q Consensus 14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D-----------~~v~vWd~~ 82 (313)
+-++|||.|.+|+|--.-|. .+|-.++-..++.|- | ..|.-+.|||+.++|+|-|.. ..++|||+.
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI-~lWGG~~f~r~~RF~-H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~ 290 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGI-ALWGGESFDRIQRFY-H-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA 290 (698)
T ss_pred eeEEecCCceEEEEEeccce-eeecCccHHHHHhcc-C-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence 35899999999999887664 789766555544442 3 458889999999999996632 578999999
Q ss_pred CCeEEEEecC--CC--CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC---CCCceEEEEEc
Q 021399 83 TGAQLFTFNF--DS--PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG---PQGRINRAVWG 155 (313)
Q Consensus 83 ~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~ 155 (313)
+|.....+.. .. .-..+.|+.+++.++-.....+.+..... .+.+.. .-..|....|+
T Consensus 291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtps---------------f~lld~Kslki~gIr~Fsws 355 (698)
T KOG2314|consen 291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPS---------------FMLLDKKSLKISGIRDFSWS 355 (698)
T ss_pred ccchhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCc---------------eeeecccccCCccccCcccC
Confidence 9987765543 11 12345677788877665443222211110 001111 12456777888
Q ss_pred cCCCEEEEeeC-----CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee----------CCCcEEEEEC
Q 021399 156 PLNRTIISAGE-----DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS----------LDKSAKLWDA 220 (313)
Q Consensus 156 ~~~~~i~t~~~-----d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s----------~dg~i~iwd~ 220 (313)
|.++.||-=.. -.++.|-.+.+++.++... -|+-.-..+-|..+|++|..-- .=..+-|+.+
T Consensus 356 P~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n---lfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfri 432 (698)
T KOG2314|consen 356 PTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN---LFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRI 432 (698)
T ss_pred CCcceEEEEcccccCCcceEEEEecCccceeeecc---ceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEe
Confidence 98776663211 1245666666666665443 2333334566778888765321 1112345554
Q ss_pred CCC-cEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehh----hhhhhccccccccceeEEE
Q 021399 221 RTL-ELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI----LQEEIGGVKGHFGPINALA 295 (313)
Q Consensus 221 ~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~h~~~V~~~~ 295 (313)
+.. -++........+...+|-|.|+-.++-.|.+.. ..++++..+ ..+.+..+. ...-+.+.
T Consensus 433 reKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k-----------~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vf 499 (698)
T KOG2314|consen 433 REKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVK-----------NTVSFYAVETNIKKPSLVKELD--KKFANTVF 499 (698)
T ss_pred eccCCCceeeecchheeeeeeccCCCeEEEEEccccc-----------cceeEEEeecCCCchhhhhhhc--ccccceEE
Confidence 432 233333345567888999999977665444321 122333222 112222222 23457789
Q ss_pred ECCCCCeeEEEEEE
Q 021399 296 FNPDGKRYGFLLLQ 309 (313)
Q Consensus 296 fspdgk~~~~~~~~ 309 (313)
|+|-|+-++..++-
T Consensus 500 wsPkG~fvvva~l~ 513 (698)
T KOG2314|consen 500 WSPKGRFVVVAALV 513 (698)
T ss_pred EcCCCcEEEEEEec
Confidence 99999988776653
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.79 E-value=4.4e-07 Score=72.73 Aligned_cols=109 Identities=17% Similarity=0.197 Sum_probs=77.5
Q ss_pred EecCCCCceEEEEEccCC-CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC-CCCEEEEeeCCCcEEEE
Q 021399 141 ILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLW 218 (313)
Q Consensus 141 ~~~~~~~~i~~~~~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iw 218 (313)
.++.|.-++..+.|+... +.+.+||+|+.+..||++..+... .....-|...|.++.-+| ++.+|++|+.|..|++|
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i-~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~ 238 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI-WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVL 238 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee-eecceeeecceEEEecCCCCCceEEEeccccceeee
Confidence 445666666666665433 577899999999999998433211 111234778888886654 57799999999999999
Q ss_pred ECC-CCcEEEEEecCCceeEEEeccCCCEEEEc
Q 021399 219 DAR-TLELIKTYVTERPVNAVTMSPLLDHVVLG 250 (313)
Q Consensus 219 d~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 250 (313)
|.| .++++..-...+.+=.+.++|...+.+.+
T Consensus 239 DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~ 271 (339)
T KOG0280|consen 239 DTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLA 271 (339)
T ss_pred ehhcccCccccCccccceEEEEecchhhhHHHH
Confidence 999 47887765555667778888876554443
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=3.2e-08 Score=85.64 Aligned_cols=173 Identities=21% Similarity=0.340 Sum_probs=113.6
Q ss_pred EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC-eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccce
Q 021399 45 LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIH 123 (313)
Q Consensus 45 ~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (313)
+..+.||+..|.+++--.+.+-|++++.|++||+|+++.. ..+.+
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t---------------------------------- 773 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT---------------------------------- 773 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc----------------------------------
Confidence 3467799999988876556678999999999999998632 11000
Q ss_pred eeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCce--eceEEEEECC
Q 021399 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHK--KTITSLAKAA 201 (313)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~--~~v~~~~~s~ 201 (313)
.........|..+|+++-|-.+-+++++ -|+.|++||..-++++........|. ..|.++- +.
T Consensus 774 ------------saCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv 838 (1034)
T KOG4190|consen 774 ------------SACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NV 838 (1034)
T ss_pred ------------ceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecc-cC
Confidence 0011123456677777777766666664 46889999998877766444333332 3344442 22
Q ss_pred CCCEEEEe-eCCCcEEEEECCCCcEEEEEec------CCceeEEEeccCCCEEEEcccccCceeEeeccCCCce
Q 021399 202 DGSHFLTG-SLDKSAKLWDARTLELIKTYVT------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 268 (313)
Q Consensus 202 ~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (313)
+...++.| +...+++++|.+..+-..++.. ....++++..|.|+.++++-+ .+.+...|.|.|+.
T Consensus 839 ~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LS--nGci~~LDaR~G~v 910 (1034)
T KOG4190|consen 839 DRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALS--NGCIAILDARNGKV 910 (1034)
T ss_pred cchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhc--CCcEEEEecCCCce
Confidence 44444444 6789999999999877666642 134788999999887766543 33466778777653
No 278
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.77 E-value=3.4e-07 Score=73.35 Aligned_cols=154 Identities=17% Similarity=0.208 Sum_probs=105.6
Q ss_pred eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE--EecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG--TYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
.++.|++.+..++++-.+|.+.+-+.......+ +.+.|+-+.|-..|+.. .++++|||.|+.+.-||++..+ .+.+
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~-~~i~ 203 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK-TFIW 203 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc-ceee
Confidence 467889999999999999999966655555544 78999999999999753 4699999999999999988432 1111
Q ss_pred cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc-cCCCEEEEeeCCCe
Q 021399 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG-PLNRTIISAGEDAI 169 (313)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~t~~~d~~ 169 (313)
.. . +-|...|.++.-+ |.+.+|+||+.|..
T Consensus 204 ~n-~------------------------------------------------kvH~~GV~SI~ss~~~~~~I~TGsYDe~ 234 (339)
T KOG0280|consen 204 HN-S------------------------------------------------KVHTSGVVSIYSSPPKPTYIATGSYDEC 234 (339)
T ss_pred ec-c------------------------------------------------eeeecceEEEecCCCCCceEEEeccccc
Confidence 00 0 0122334344333 34568999999999
Q ss_pred EEEEECCC-CceeeecccccCceeceEEEEECCCCC--EEEEeeCCCcEEEEECCC
Q 021399 170 VRIWDTET-GKLLKESDKETGHKKTITSLAKAADGS--HFLTGSLDKSAKLWDART 222 (313)
Q Consensus 170 i~lwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~dg~i~iwd~~~ 222 (313)
|++||.++ ++++..- .-.+.|+.+..+|.-. .++++-..| .+|-+...
T Consensus 235 i~~~DtRnm~kPl~~~----~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~ 285 (339)
T KOG0280|consen 235 IRVLDTRNMGKPLFKA----KVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD 285 (339)
T ss_pred eeeeehhcccCccccC----ccccceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence 99999874 4444322 2457899999988643 244444444 46666544
No 279
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.77 E-value=5.3e-08 Score=94.55 Aligned_cols=190 Identities=16% Similarity=0.184 Sum_probs=126.5
Q ss_pred CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCC--CeeEE
Q 021399 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS--PARSV 99 (313)
Q Consensus 22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~--~~~~~ 99 (313)
++.+.....++...-|..+-+.. .++-|-..|.++.-+|...+.+||++||.|++|.-..++.+..+.... .+...
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~--~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~ 2257 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV--MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRS 2257 (2439)
T ss_pred cccCCcccCCccccceeccccee--EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhh
Confidence 34444444555555554332222 234455678888888888899999999999999988888777665432 33333
Q ss_pred Eee-cCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee---CCCeEEEEEC
Q 021399 100 DFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG---EDAIVRIWDT 175 (313)
Q Consensus 100 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~---~d~~i~lwd~ 175 (313)
.|+ .|+++.++..++....+. . +.++....+.|.....+..|-. ..+++++ +++.+.+||.
T Consensus 2258 ~f~~qGnk~~i~d~dg~l~l~q------~-------~pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDt 2322 (2439)
T KOG1064|consen 2258 RFNHQGNKFGIVDGDGDLSLWQ------A-------SPKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDT 2322 (2439)
T ss_pred hhcccCCceeeeccCCceeecc------c-------CCcceeccccCCccccceeeee--hhhhccccCCCCCcccchhc
Confidence 444 366776665554332221 1 2345566677777777766654 3456654 5678999997
Q ss_pred CCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 176 ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 176 ~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
.......-+ +..|.+.++++++.|....|+||+.+|.|.+||++.-+++..++
T Consensus 2323 l~~~~~s~v--~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2323 LLPPMNSLV--HTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred ccCccccee--eeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence 543332222 25799999999999999999999999999999998766655543
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.76 E-value=3.5e-06 Score=66.91 Aligned_cols=200 Identities=14% Similarity=0.078 Sum_probs=120.5
Q ss_pred CCCEEEEeeCCCCeEEEeCCCCc-EEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeEEEEecC-CCCee
Q 021399 21 DGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNF-DSPAR 97 (313)
Q Consensus 21 ~g~~l~s~s~d~~i~iw~~~~~~-~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~~~~~~-~~~~~ 97 (313)
+..+|+.|+.-|...+|...+.+ ..+....|...|+-+.=.-+ .-.+.-++.|.++|+.+++.+......-. .....
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n 162 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN 162 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence 35689999999999999988654 44555666665532211111 22456678999999998875543322211 12356
Q ss_pred EEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEE--EecCCCCceEEEEEccCCCEEEEeeCCCeEEEEEC
Q 021399 98 SVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL--ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT 175 (313)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~ 175 (313)
++.++++.+..+...+. .++.....+...+... ........-.+..|+.....+|++..||++.|||+
T Consensus 163 s~~~snd~~~~~~Vgds----------~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DV 232 (344)
T KOG4532|consen 163 SLHYSNDPSWGSSVGDS----------RRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDV 232 (344)
T ss_pred eeEEcCCCceEEEecCC----------CcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEe
Confidence 67777777666554431 0111111111111111 11122223356778888889999999999999999
Q ss_pred CCCc-eeeecc-cccCceeceEEEEECCCCCE--EEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 176 ETGK-LLKESD-KETGHKKTITSLAKAADGSH--FLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 176 ~~~~-~~~~~~-~~~~h~~~v~~~~~s~~~~~--l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
+... ++.+.. ....|++.++.+.|++.|.. |.-.=.=+.+.+-|++++.-.+.+.
T Consensus 233 R~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 233 RNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred cccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 7643 333222 22458999999999986653 2222223578899999987665554
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.76 E-value=1.7e-08 Score=83.83 Aligned_cols=88 Identities=23% Similarity=0.332 Sum_probs=74.3
Q ss_pred CcccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEe-cCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399 2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (313)
Q Consensus 2 ~~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~-~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd 80 (313)
+++...||-.-++.++++||+++|+++..|..|||-....--.+..| -||+..|..++.-+ ++.|+|+|.|+++++||
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGDKTLRLWD 221 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCCCcEEEEe
Confidence 45677899999999999999999999999999998776655444444 58999999999875 56799999999999999
Q ss_pred CCCCeEEEEe
Q 021399 81 VETGAQLFTF 90 (313)
Q Consensus 81 ~~~~~~~~~~ 90 (313)
++++++...+
T Consensus 222 ~~sgk~L~t~ 231 (390)
T KOG3914|consen 222 ITSGKLLDTC 231 (390)
T ss_pred cccCCccccc
Confidence 9999876444
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.75 E-value=1.9e-06 Score=84.33 Aligned_cols=181 Identities=14% Similarity=0.161 Sum_probs=112.8
Q ss_pred eeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEecC---------CC------CceEEEEECCCCC-eEEEeeCCCc
Q 021399 13 LTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRG---------HN------GAVWCCDVSRDSM-TLITGSADQT 75 (313)
Q Consensus 13 v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~---------H~------~~V~~~~~~~~~~-~l~s~s~D~~ 75 (313)
.+.++|+| ++..+++.+.++.|++||..++... .+.+ +. .....++++|+++ ++++-+.++.
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~ 763 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS 763 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence 46899999 5667777788899999998877542 2211 11 1235689999987 5566667799
Q ss_pred EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399 76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (313)
Q Consensus 76 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (313)
|++||+.++....... .++..... ..... +....... ..+ ..-..++++
T Consensus 764 Irv~D~~tg~~~~~~g--------------------g~~~~~~~-l~~fG----~~dG~g~~--~~l----~~P~Gvavd 812 (1057)
T PLN02919 764 IRALDLKTGGSRLLAG--------------------GDPTFSDN-LFKFG----DHDGVGSE--VLL----QHPLGVLCA 812 (1057)
T ss_pred EEEEECCCCcEEEEEe--------------------cccccCcc-ccccc----CCCCchhh--hhc----cCCceeeEe
Confidence 9999998764321110 00000000 00000 00000000 001 112367788
Q ss_pred cCCCEEEEeeCCCeEEEEECCCCceeeeccc----------ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 021399 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDK----------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 225 (313)
Q Consensus 156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~----------~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 225 (313)
++|..+++-..+++|++||..++........ ..+.-.....++++++|+.+++-+.++.|++||+++++.
T Consensus 813 ~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 813 KDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 9999888888999999999987654322110 011223567899999999999999999999999998765
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.73 E-value=5.9e-05 Score=74.16 Aligned_cols=252 Identities=13% Similarity=0.055 Sum_probs=137.8
Q ss_pred cceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCcEEEEecC-C-C------------CceEEEEECCCCCeEEEee-CCC
Q 021399 11 RPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRG-H-N------------GAVWCCDVSRDSMTLITGS-ADQ 74 (313)
Q Consensus 11 ~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-H-~------------~~V~~~~~~~~~~~l~s~s-~D~ 74 (313)
.....++++++ |..+++-+.++.|+++|.. +..+..+.+ . . ..-..++++++++.++.+. ..+
T Consensus 568 ~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~ 646 (1057)
T PLN02919 568 KFPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH 646 (1057)
T ss_pred CCCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence 44457889875 6677777888999999975 444444432 1 1 1236788988887655554 457
Q ss_pred cEEEEECCCCeEEEEecC-----------------CCCeeEEEeec-CCeEEEEECC-Cc-eeccccc-eeeeeeeCC-C
Q 021399 75 TAKLWNVETGAQLFTFNF-----------------DSPARSVDFAV-GDKLAVITTD-PF-MELNSAI-HVKRIARDP-A 132 (313)
Q Consensus 75 ~v~vWd~~~~~~~~~~~~-----------------~~~~~~~~~~~-~~~~~~~~~~-~~-~~~~~~~-~~~~~~~~~-~ 132 (313)
.|+++|+.++........ -.....+.+.+ ++.+.+.... .. ...+... ....+..+- .
T Consensus 647 ~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 647 ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 899999877654322110 01223556666 3444333221 11 1100000 000000000 0
Q ss_pred -CCCCceEEEecCCCCceEEEEEccCCC-EEEEeeCCCeEEEEECCCCceeeecc----------c---cc-----Ccee
Q 021399 133 -DQGGESVLILKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESD----------K---ET-----GHKK 192 (313)
Q Consensus 133 -~~~~~~~~~~~~~~~~i~~~~~~~~~~-~i~t~~~d~~i~lwd~~~~~~~~~~~----------~---~~-----~h~~ 192 (313)
...+.. ...........++++|+++ .+++-+.++.|++||+.++....... . .. ..-.
T Consensus 727 ~~~~g~~--~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 727 RNLNGSS--GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccCCCCc--cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 000000 0000112345688999987 45556677999999988654211000 0 00 0112
Q ss_pred ceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC--------------CceeEEEeccCCCEEEEcccccCcee
Q 021399 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--------------RPVNAVTMSPLLDHVVLGGGQDASAV 258 (313)
Q Consensus 193 ~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~p~~~~~~~~~~~~~~~~ 258 (313)
....++++++|+.+++-+.++.|++||.+++......... .....+++++++. ++++.. ..+.+
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt-~Nn~I 882 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADT-NNSLI 882 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEEC-CCCEE
Confidence 3468899999999999999999999999887665332111 1356788888886 455432 33456
Q ss_pred EeeccCCCc
Q 021399 259 TTTDHRAGK 267 (313)
Q Consensus 259 ~~~~~~~~~ 267 (313)
..+|...+.
T Consensus 883 rvid~~~~~ 891 (1057)
T PLN02919 883 RYLDLNKGE 891 (1057)
T ss_pred EEEECCCCc
Confidence 666665554
No 284
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.72 E-value=8.6e-05 Score=61.03 Aligned_cols=225 Identities=15% Similarity=0.075 Sum_probs=132.8
Q ss_pred eEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEEC-CCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399 14 TYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS-RDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (313)
Q Consensus 14 ~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~-~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~ 91 (313)
.+..|.+ ++.++++--..+.|..|+.++++... +.... ...+.+. +++. ++.+..++. .++|+.+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~-l~v~~~~~~-~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGR-LYVADSGGI-AVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSE-EEEEETTCE-EEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCE-EEEEEcCce-EEEecCCCcEEEEee
Confidence 4578888 67777777778999999988876532 22222 5566676 6655 445555544 555998886554433
Q ss_pred C------CCCeeEEEeecCCeEEEEECCCceeccc-cceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE-E
Q 021399 92 F------DSPARSVDFAVGDKLAVITTDPFMELNS-AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-S 163 (313)
Q Consensus 92 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-t 163 (313)
. ......+.+.+++.+.+........... ...++.+..+ +. +..+.......+.++|+|+++.+. +
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-----~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-----GK-VTVVADGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-----SE-EEEEEEEESSEEEEEEETTSSEEEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-----Ce-EEEEecCcccccceEECCcchheeec
Confidence 2 1234566677776655544321110000 0222222211 11 122222234567899999998664 5
Q ss_pred eeCCCeEEEEECCCCce-ee---ecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC-CceeEE
Q 021399 164 AGEDAIVRIWDTETGKL-LK---ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAV 238 (313)
Q Consensus 164 ~~~d~~i~lwd~~~~~~-~~---~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~ 238 (313)
-+..+.|..+++..... +. .+..........-.+++..+|+..++....+.|.++|.+ ++.+..+..+ ..+.++
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~ 230 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNC 230 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence 67788899998753221 21 111111112346779999999988887788999999988 8888887654 567788
Q ss_pred Ee-ccCCCEEEEc
Q 021399 239 TM-SPLLDHVVLG 250 (313)
Q Consensus 239 ~~-~p~~~~~~~~ 250 (313)
+| .|+.+.++++
T Consensus 231 ~fgg~~~~~L~vT 243 (246)
T PF08450_consen 231 AFGGPDGKTLYVT 243 (246)
T ss_dssp EEESTTSSEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 88 4666666664
No 285
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.1e-07 Score=80.37 Aligned_cols=215 Identities=18% Similarity=0.207 Sum_probs=141.2
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC---CcEEEEecCCCCceEEEEECCCCCeEEEeeC-CCcEEEEECCC
Q 021399 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN---GERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNVET 83 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~---~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~-D~~v~vWd~~~ 83 (313)
.|.+.|+.+. ....+++.+++.||.++.|--.. -+-++.+.+|-+.|.+++.+.++.++.|.+. |..+|++|+++
T Consensus 7 mhrd~i~hv~-~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 7 MHRDVITHVF-PTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred cccceeeeEe-eehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 4777777764 34578999999999999995433 1345677899999999999999999999777 99999999987
Q ss_pred CeEEEEecC--CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 84 GAQLFTFNF--DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 84 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
-..+..+.. -.....+..++++....+..... -.+.+.+. +......+....-.-|.++|....+.+.+..+
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~--~sg~i~Vv----D~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLF--KSGKIFVV----DGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecc--cCCCcEEE----CCcCCcCccceecccccCceEEEEeeccccce
Confidence 554322222 12222333344544333221100 00111111 11111112223334578899999999999999
Q ss_pred EEeeCCCeEEEEECCC-Cceeee-cccc----------cCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE
Q 021399 162 ISAGEDAIVRIWDTET-GKLLKE-SDKE----------TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~-~~~~~~-~~~~----------~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (313)
++....|.|.-|..+- -+..+. +... .-......++.++|+|..+.+-+.|..|++++.++++.++.+
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 9999999999998762 110000 1100 112456788999999999999999999999999999776554
No 286
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.69 E-value=3.4e-07 Score=74.05 Aligned_cols=245 Identities=17% Similarity=0.173 Sum_probs=137.6
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-----EEEEecCCCC------------ceEEEEECCCCC--eEEEe
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----RLGTYRGHNG------------AVWCCDVSRDSM--TLITG 70 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-----~~~~~~~H~~------------~V~~~~~~~~~~--~l~s~ 70 (313)
.+.|+++.|...|.+|++|...|+|.++.-+... ....|++|+. .|..+.|-.+++ .|+-.
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 4468899999999999999999999999655432 2345677764 377788765432 56667
Q ss_pred eCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe-cCCCCce
Q 021399 71 SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRI 149 (313)
Q Consensus 71 s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i 149 (313)
+.|++||+|.+.+......... .-..++.+.-++.+. +.....+....+-..+. ...+..+. ..|.-.|
T Consensus 106 tNdktiKlWKiyeknlk~va~n-nls~~~~~~~~g~~~---s~~~l~lprls~hd~ii------aa~p~rvyaNaH~yhi 175 (460)
T COG5170 106 TNDKTIKLWKIYEKNLKVVAEN-NLSDSFHSPMGGPLT---STKELLLPRLSEHDEII------AAKPCRVYANAHPYHI 175 (460)
T ss_pred cCCceeeeeeeecccchhhhcc-ccccccccccCCCcC---CHHHhhcccccccceEE------EeccceeccccceeEe
Confidence 8999999999876532211110 000001000011000 00000000000000000 00111111 3466678
Q ss_pred EEEEEccCCCEEEEeeCCCeEEEEECCCCce-eeecccccCc-----eeceEEEEECCCCC-EEEEeeCCCcEEEEECCC
Q 021399 150 NRAVWGPLNRTIISAGEDAIVRIWDTETGKL-LKESDKETGH-----KKTITSLAKAADGS-HFLTGSLDKSAKLWDART 222 (313)
Q Consensus 150 ~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~-~~~~~~~~~h-----~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~ 222 (313)
+++.++.+.+.++++. |-+|.+|++.-... ...+. ..+| ...|++..|+|... .+.-.++.|.|++-|+|.
T Consensus 176 NSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVD-iKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq 253 (460)
T COG5170 176 NSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVD-IKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ 253 (460)
T ss_pred eeeeecCchheeeecc-ceeeeeccccccCCceEEEe-ccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence 8999998888777654 78899998753221 11111 1122 24577888988654 455667789999999984
Q ss_pred CcEE------EEEe-c----------CCceeEEEeccCCCEEEEcccccCceeEeeccCCCcee
Q 021399 223 LELI------KTYV-T----------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE 269 (313)
Q Consensus 223 ~~~~------~~~~-~----------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (313)
..+. .... . -..+..+.|++.+.+++. -+...+.+||.+..+..
T Consensus 254 ~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIls---RdyltvkiwDvnm~k~p 314 (460)
T COG5170 254 SALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILS---RDYLTVKIWDVNMAKNP 314 (460)
T ss_pred hhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEE---eccceEEEEecccccCC
Confidence 3211 1100 0 124667889999887764 24566777777655443
No 287
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=1.7e-06 Score=77.46 Aligned_cols=237 Identities=11% Similarity=0.123 Sum_probs=138.6
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec--CCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~--~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
++|.||++.|.-+.|+.+.+.|-|...+|.|.||-+-.+.-..... ...+-|.+++|+.||+.+...-.||.|.+=.+
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsv 144 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSV 144 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEee
Confidence 5899999999999999999999999999999999876664332222 23455789999999998888888888877665
Q ss_pred CCCeEEEEecCC-CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCC-CCce-E---EEecCCCCceEEEEE-
Q 021399 82 ETGAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-GGES-V---LILKGPQGRINRAVW- 154 (313)
Q Consensus 82 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~---~~~~~~~~~i~~~~~- 154 (313)
+. ..++-.... .....+.|+++...++..- .++..++++...+.... ..+. + ..+..-.-+|..+.|
T Consensus 145 dG-NRIwgKeLkg~~l~hv~ws~D~~~~Lf~~-----ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 145 DG-NRIWGKELKGQLLAHVLWSEDLEQALFKK-----ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred cc-ceecchhcchheccceeecccHHHHHhhh-----cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 43 333322211 1122344555544332211 11122222111111000 0000 0 001101112333333
Q ss_pred -------ccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC---------cEEEE
Q 021399 155 -------GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK---------SAKLW 218 (313)
Q Consensus 155 -------~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg---------~i~iw 218 (313)
.|+.+.++.+-..|.+.|..-.+....-.+. -...+....|+++|..|+.++.|. .|.++
T Consensus 219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fy 294 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFY 294 (1189)
T ss_pred cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe----cccEeecceecCCCcEEEEccCcccccCccccceEEEe
Confidence 3577899999999998887543322111111 124677788999999999988652 34444
Q ss_pred ECCCCcEEEEEec-CCceeEEEeccCCCEEEEcc
Q 021399 219 DARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 219 d~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~ 251 (313)
.. -|+.+.++.. ...+..++|-..+-.++++.
T Consensus 295 sp-~G~i~gtlkvpg~~It~lsWEg~gLriA~Av 327 (1189)
T KOG2041|consen 295 SP-YGHIVGTLKVPGSCITGLSWEGTGLRIAIAV 327 (1189)
T ss_pred cc-chhheEEEecCCceeeeeEEcCCceEEEEEe
Confidence 32 3556666654 45688888877665555543
No 288
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.65 E-value=2.5e-05 Score=67.48 Aligned_cols=101 Identities=12% Similarity=0.123 Sum_probs=71.0
Q ss_pred CCCCceEEEEEccCCCEEEEee--CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC---CcEEEE
Q 021399 144 GPQGRINRAVWGPLNRTIISAG--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLW 218 (313)
Q Consensus 144 ~~~~~i~~~~~~~~~~~i~t~~--~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---g~i~iw 218 (313)
+..++|...+|.|.++.|++.+ ..-.+.++|++.. ++-.. -...=.-+.|+|.+.+++.++.| |.+-+|
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~----Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~ 345 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYF----PEQKRNTIFFSPHERYILFAGFDNLQGNIEIF 345 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccc--eEEec----CCcccccccccCcccEEEEecCCccccceEEe
Confidence 5578999999999999887765 5667888998754 22221 12334556799999999998876 568999
Q ss_pred ECCCCcEEE-EEecCCceeEEEeccCCCEEEEcc
Q 021399 219 DARTLELIK-TYVTERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 219 d~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~ 251 (313)
|....-.+. .+.. ....-+.|+|+++.+.++.
T Consensus 346 ~~~~rf~~~~~~~~-~n~s~~~wspd~qF~~~~~ 378 (561)
T COG5354 346 DPAGRFKVAGAFNG-LNTSYCDWSPDGQFYDTDT 378 (561)
T ss_pred ccCCceEEEEEeec-CCceEeeccCCceEEEecC
Confidence 987644333 4332 2344567999998877653
No 289
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.63 E-value=4.3e-05 Score=67.05 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=52.9
Q ss_pred CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCC
Q 021399 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD 93 (313)
Q Consensus 21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~ 93 (313)
.+.+++.++.++.+.-+|.++|+.+...+-.......... ++..++.++.|+.+..+|..+++.++.....
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 134 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS 134 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC
Confidence 3668888999999999999999998776644332222332 3557778888999999999999988766543
No 290
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4.5e-06 Score=69.88 Aligned_cols=80 Identities=11% Similarity=0.233 Sum_probs=71.6
Q ss_pred cccccccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECC
Q 021399 5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVE 82 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~ 82 (313)
.+.+|...|..++|||..+ +|..++.+..|+|.|+++..++.++..| ..+|+++|.-|. +.+..|...|.|.|+|++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 6778889999999999988 7888999999999999999999999998 789999998765 478888899999999997
Q ss_pred CCe
Q 021399 83 TGA 85 (313)
Q Consensus 83 ~~~ 85 (313)
..+
T Consensus 267 ~~~ 269 (463)
T KOG1645|consen 267 QPE 269 (463)
T ss_pred CCC
Confidence 654
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.56 E-value=0.00011 Score=71.15 Aligned_cols=258 Identities=16% Similarity=0.188 Sum_probs=143.7
Q ss_pred ceeEEEEccCCCEEEEeeC--CC--CeEEEeCCCCc---EEEEec-----CCCCceEEEEECCCCCeEEEeeCCCcEEEE
Q 021399 12 PLTYLKYNKDGDLLFSCAK--DH--TPTVWFADNGE---RLGTYR-----GHNGAVWCCDVSRDSMTLITGSADQTAKLW 79 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~--d~--~i~iw~~~~~~---~~~~~~-----~H~~~V~~~~~~~~~~~l~s~s~D~~v~vW 79 (313)
.+...+|++....++.... .. .|.+....... .+..+. ...+.|.++.+-++.+.++.+..+|.|.+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~ 102 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIILV 102 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEEE
Confidence 4566777776654443332 22 23333322222 233333 234678999999998888888999999999
Q ss_pred ----ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCC--ceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399 80 ----NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP--FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (313)
Q Consensus 80 ----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (313)
+..+.........+..+.++.|+|++.++++.+.. ...+... -..+....
T Consensus 103 ~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~------------------------fd~i~E~~ 158 (928)
T PF04762_consen 103 REDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRD------------------------FDPISEVP 158 (928)
T ss_pred EccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEecc------------------------ceEEEEee
Confidence 77776666666778899999999988777765532 1111111 11111111
Q ss_pred EccC---CCEEEEeeCCCeEEEEECCCCce----ee-----ec--ccccCceeceEEEEECCCCCEEEEeeC---C---C
Q 021399 154 WGPL---NRTIISAGEDAIVRIWDTETGKL----LK-----ES--DKETGHKKTITSLAKAADGSHFLTGSL---D---K 213 (313)
Q Consensus 154 ~~~~---~~~i~t~~~d~~i~lwd~~~~~~----~~-----~~--~~~~~h~~~v~~~~~s~~~~~l~s~s~---d---g 213 (313)
+.++ ....++.|...+=.-|-=.-++. ++ +. .... +...-..++|-.||.++|+.+. . .
T Consensus 159 l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R 237 (928)
T PF04762_consen 159 LDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRR 237 (928)
T ss_pred cCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCcee
Confidence 1111 11233333322211111000110 00 00 0111 3445678899999999998885 3 4
Q ss_pred cEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccc-cCceeEeecc---CCCceeeeeeehhhhhhhccccccc
Q 021399 214 SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQ-DASAVTTTDH---RAGKFEAKFFDKILQEEIGGVKGHF 288 (313)
Q Consensus 214 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~h~ 288 (313)
.+|+|+-+ |++-.+-. .++--.+++|.|.|+.++.+-.. +...+..+.. |-+.|.+++ ....
T Consensus 238 ~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~------------~~~~ 304 (928)
T PF04762_consen 238 VIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRF------------DPEE 304 (928)
T ss_pred EEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCC------------CCCC
Confidence 79999876 55433322 23345679999999866654321 1222333321 222232222 1235
Q ss_pred cceeEEEECCCCCeeEEEE
Q 021399 289 GPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 289 ~~V~~~~fspdgk~~~~~~ 307 (313)
..|..|+||+|+..+|...
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~ 323 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWL 323 (928)
T ss_pred ceeeEEEECCCCCEEEEEe
Confidence 6889999999999999865
No 292
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.55 E-value=2.7e-06 Score=69.84 Aligned_cols=182 Identities=15% Similarity=0.209 Sum_probs=114.9
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE---EecCCC-----CceEEEEECCC-CCeEEEeeCCCcE
Q 021399 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG---TYRGHN-----GAVWCCDVSRD-SMTLITGSADQTA 76 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~---~~~~H~-----~~V~~~~~~~~-~~~l~s~s~D~~v 76 (313)
-.+|+-.|.+++++.|.+.++|+. |=.|.+|+++-...-- -++-|. .-|++..|+|. .+.|+=.++.|+|
T Consensus 160 aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtI 238 (433)
T KOG1354|consen 160 ANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTI 238 (433)
T ss_pred cccceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence 356888999999999999999764 6788999887433211 223332 24688899986 3577777889999
Q ss_pred EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
++-|++.....-... .+..++.++. ....+..--..|..+.|+.
T Consensus 239 rLcDmR~~aLCd~hs----------------------------------KlfEepedp~--~rsffseiIsSISDvKFs~ 282 (433)
T KOG1354|consen 239 RLCDMRQSALCDAHS----------------------------------KLFEEPEDPS--SRSFFSEIISSISDVKFSH 282 (433)
T ss_pred EEeechhhhhhcchh----------------------------------hhhccccCCc--chhhHHHHhhhhhceEEcc
Confidence 999998543210000 0000011100 0000111123567889999
Q ss_pred CCCEEEEeeCCCeEEEEECCC-CceeeecccccC---------ceece---EEEEECCCCCEEEEeeCCCcEEEEECCCC
Q 021399 157 LNRTIISAGEDAIVRIWDTET-GKLLKESDKETG---------HKKTI---TSLAKAADGSHFLTGSLDKSAKLWDARTL 223 (313)
Q Consensus 157 ~~~~i~t~~~d~~i~lwd~~~-~~~~~~~~~~~~---------h~~~v---~~~~~s~~~~~l~s~s~dg~i~iwd~~~~ 223 (313)
.|+++++-.. -+|+|||+.. .+++.+...+.- .+..| ..++|+.++.+++|||..+..+++++..+
T Consensus 283 sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 283 SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 9999997654 6899999843 333333221100 12223 45789999999999999999999997765
Q ss_pred cE
Q 021399 224 EL 225 (313)
Q Consensus 224 ~~ 225 (313)
..
T Consensus 362 sk 363 (433)
T KOG1354|consen 362 SK 363 (433)
T ss_pred cc
Confidence 43
No 293
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.52 E-value=8e-05 Score=64.01 Aligned_cols=169 Identities=15% Similarity=0.180 Sum_probs=115.1
Q ss_pred CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCC-cEEEEECCCCeEEEEecCCCCeeEE
Q 021399 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ-TAKLWNVETGAQLFTFNFDSPARSV 99 (313)
Q Consensus 21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~-~v~vWd~~~~~~~~~~~~~~~~~~~ 99 (313)
+|++++..|. |.+-|.+.-.+-.+ --+|.+.|.-..+..+++-++.|..|| .+-|+|.++++..
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~i--qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k------------ 395 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSI--QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK------------ 395 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeE--EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE------------
Confidence 5777777665 45555554444332 235666777667776777777888887 7778887765432
Q ss_pred EeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCc
Q 021399 100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 179 (313)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~ 179 (313)
..+..-+.|..+..+|+|+.++.+.....|-+.|+.++.
T Consensus 396 -----------------------------------------r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 396 -----------------------------------------RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred -----------------------------------------EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 122234567778889999999988888888888998886
Q ss_pred eeeecccccCceeceEEEEECCCCCEEEEeeCCC----cEEEEECCCCcEEEEEecCCceeEEEeccCCCEEE
Q 021399 180 LLKESDKETGHKKTITSLAKAADGSHFLTGSLDK----SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVV 248 (313)
Q Consensus 180 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 248 (313)
. +.+.. +..+.|+.++|+|++.+||-+--+| .|+++|+..++..........-.+-+|.|++.++.
T Consensus 435 v-~~idk--S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLY 504 (668)
T COG4946 435 V-RLIDK--SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLY 504 (668)
T ss_pred e-eEecc--cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEE
Confidence 4 23332 3567899999999999999765554 68999999888765544333344555666666554
No 294
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=4.8e-06 Score=75.48 Aligned_cols=158 Identities=11% Similarity=0.106 Sum_probs=109.3
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
+.+.|++++ +++|+-|.-+|.|++.+.. +.. ++...|+.. ..+|++++|||.||+|.|-.+.+.+.....
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~ 109 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQY 109 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccceeE
Confidence 345666665 6799999999999999864 333 455556554 567999999999999999998888777777
Q ss_pred cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeE
Q 021399 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170 (313)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i 170 (313)
.+..++.++.+.|+=. -...+.+++||.-| +
T Consensus 110 df~rpiksial~Pd~~------------------------------------------------~~~sk~fv~GG~ag-l 140 (846)
T KOG2066|consen 110 DFKRPIKSIALHPDFS------------------------------------------------RQQSKQFVSGGMAG-L 140 (846)
T ss_pred ecCCcceeEEeccchh------------------------------------------------hhhhhheeecCcce-E
Confidence 7766666665554200 00135688888888 7
Q ss_pred EEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec
Q 021399 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (313)
Q Consensus 171 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 231 (313)
.++..+--.....+ ....-.+.|.++.|. |++||=++.+| |++||+.+.+.+..+..
T Consensus 141 vL~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~ 197 (846)
T KOG2066|consen 141 VLSERNWLGNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPP 197 (846)
T ss_pred EEehhhhhcCccce-eeecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCC
Confidence 77764321111111 112346789999996 77888887666 79999999888776653
No 295
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.47 E-value=0.00021 Score=59.44 Aligned_cols=207 Identities=14% Similarity=0.212 Sum_probs=128.5
Q ss_pred eEEEEccCCCEEEEeeC-CCCeEEEeCCC-CcEEE--EecCCCCc----------eEEEEECCCCCeEEEeeC-CCcEEE
Q 021399 14 TYLKYNKDGDLLFSCAK-DHTPTVWFADN-GERLG--TYRGHNGA----------VWCCDVSRDSMTLITGSA-DQTAKL 78 (313)
Q Consensus 14 ~~~~fs~~g~~l~s~s~-d~~i~iw~~~~-~~~~~--~~~~H~~~----------V~~~~~~~~~~~l~s~s~-D~~v~v 78 (313)
..++++++|++++++.- -|.|.++-+.+ |.+.. .+..|.++ +.+..+.|+++++++.+- -..|.+
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~ 171 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFL 171 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEE
Confidence 66899999999999875 58899997754 43321 22335444 788899999999888752 346889
Q ss_pred EECCCCeEEEE----ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCC---ceEEEec---CCCCc
Q 021399 79 WNVETGAQLFT----FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG---ESVLILK---GPQGR 148 (313)
Q Consensus 79 Wd~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~ 148 (313)
+++++++.... +......+.+.|+|..+++.+.+. +++.+.++.... ....- +.+..+. .....
T Consensus 172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E----L~stV~v~~y~~--~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE----LNSTVDVLEYNP--AVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEec----cCCEEEEEEEcC--CCceEEEeeeeccCccccCCCCc
Confidence 99998765322 123456778899999999887653 222222222111 00000 0111111 11234
Q ss_pred eEEEEEccCCCEEEEeeC-CCeEEEEECCC-CceeeecccccCceeceEEEEECCCCCEEEEeeCC-CcEEEEE--CCCC
Q 021399 149 INRAVWGPLNRTIISAGE-DAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-KSAKLWD--ARTL 223 (313)
Q Consensus 149 i~~~~~~~~~~~i~t~~~-d~~i~lwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-g~i~iwd--~~~~ 223 (313)
...+-++++|+++..+.+ ...|-++.+.. +..+..+.....+....+.+.+++.|++|+++..| ..|.+|. -+||
T Consensus 246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG 325 (346)
T COG2706 246 AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG 325 (346)
T ss_pred eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence 556778899998776643 23566766532 23344333334456678999999999999998864 4588885 4455
Q ss_pred cEE
Q 021399 224 ELI 226 (313)
Q Consensus 224 ~~~ 226 (313)
++-
T Consensus 326 ~L~ 328 (346)
T COG2706 326 RLT 328 (346)
T ss_pred eEE
Confidence 553
No 296
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=9.7e-07 Score=72.39 Aligned_cols=168 Identities=9% Similarity=0.095 Sum_probs=109.3
Q ss_pred EEEccCC-CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCC
Q 021399 16 LKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS 94 (313)
Q Consensus 16 ~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~ 94 (313)
++|+-+- .+-++.+.+-.|-+-+++++-.. .|. -.+.|+++.|...++++..|.+.|.|...|++...+- .
T Consensus 217 CawSlni~gyhfs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG------~ 288 (425)
T KOG2695|consen 217 CAWSLNIMGYHFSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG------N 288 (425)
T ss_pred hhhhhccceeeecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC------C
Confidence 3566432 23366777777788888877543 333 4678999999888889999999999999999865210 0
Q ss_pred CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc-CCCEEEEeeCCCeEEEE
Q 021399 95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIW 173 (313)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~i~t~~~d~~i~lw 173 (313)
.- .. ..-.|.+.+++++.-. ++.+++..+-+|+|+||
T Consensus 289 ~~-----------------------------------------~a-~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLy 326 (425)
T KOG2695|consen 289 GW-----------------------------------------CA-QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLY 326 (425)
T ss_pred Cc-----------------------------------------ce-EEEEcCcchhhhhhhccccceEeeccCcCceeEe
Confidence 00 00 0011334444444332 45678888999999999
Q ss_pred ECCCCceeeecccccCceece--EEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC
Q 021399 174 DTETGKLLKESDKETGHKKTI--TSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233 (313)
Q Consensus 174 d~~~~~~~~~~~~~~~h~~~v--~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 233 (313)
|.+.-++-..+..-.||...- .-+-..+....|++++.|-..|||.++.+.++.++..+.
T Consensus 327 D~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 327 DLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 987655511122223453322 222345566679999999999999999999998886543
No 297
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.43 E-value=1.7e-06 Score=79.28 Aligned_cols=144 Identities=17% Similarity=0.206 Sum_probs=100.4
Q ss_pred cCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeC---------CCcEEEEECCCCeEEEEe
Q 021399 20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---------DQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 20 ~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~---------D~~v~vWd~~~~~~~~~~ 90 (313)
.++++|++|...|+|.+-|..+-+.++++.+|.+.|.... -.|++|+|||. |..|+|||++....+..+
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI 262 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPI 262 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCc
Confidence 4688999999999999999999999999999999996555 45889999984 566889998875543222
Q ss_pred cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC-CCEEEEeeCCCe
Q 021399 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTIISAGEDAI 169 (313)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~t~~~d~~ 169 (313)
.+.-... -+.|+|. ...+++++..|.
T Consensus 263 ~~~~~P~-----------------------------------------------------flrf~Psl~t~~~V~S~sGq 289 (1118)
T KOG1275|consen 263 QFPYGPQ-----------------------------------------------------FLRFHPSLTTRLAVTSQSGQ 289 (1118)
T ss_pred ccccCch-----------------------------------------------------hhhhcccccceEEEEecccc
Confidence 1111000 0112222 235677777788
Q ss_pred EEEEECCC-Cce-eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEE
Q 021399 170 VRIWDTET-GKL-LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (313)
Q Consensus 170 i~lwd~~~-~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd 219 (313)
..+.|... ..+ ..... .......+.+++++++++.++-|..+|.|.+|-
T Consensus 290 ~q~vd~~~lsNP~~~~~~-v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKM-VNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eeeccccccCCCccceeE-EccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88887321 111 11111 112345589999999999999999999999996
No 298
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.39 E-value=0.0002 Score=62.79 Aligned_cols=187 Identities=16% Similarity=0.180 Sum_probs=103.0
Q ss_pred CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceE-----EEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCe
Q 021399 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-----CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA 96 (313)
Q Consensus 22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~-----~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~ 96 (313)
+..++.++.|+.+..||.++++.+.+++....... +.... +..++.+..++.+..+|+.+++.++......+.
T Consensus 145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 222 (377)
T TIGR03300 145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK 222 (377)
T ss_pred CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence 44566677788888889888888777654332211 11111 236677788899999999998877654321110
Q ss_pred ------------eEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 97 ------------RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 97 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
... ...++.+.+...+... ...+. ..++.+-..+. ...... ...+..+..+
T Consensus 223 g~~~~~~~~~~~~~p-~~~~~~vy~~~~~g~l------~a~d~------~tG~~~W~~~~--~~~~~p--~~~~~~vyv~ 285 (377)
T TIGR03300 223 GRTELERLVDVDGDP-VVDGGQVYAVSYQGRV------AALDL------RSGRVLWKRDA--SSYQGP--AVDDNRLYVT 285 (377)
T ss_pred CCCchhhhhccCCcc-EEECCEEEEEEcCCEE------EEEEC------CCCcEEEeecc--CCccCc--eEeCCEEEEE
Confidence 000 0112333333222111 00000 01111111110 000111 1235667778
Q ss_pred eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec
Q 021399 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (313)
Q Consensus 165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 231 (313)
+.+|.|..+|..+++.+-+...... ....+... .+..++.++.||.+.++|.++++.+.++..
T Consensus 286 ~~~G~l~~~d~~tG~~~W~~~~~~~--~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 286 DADGVVVALDRRSGSELWKNDELKY--RQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKT 348 (377)
T ss_pred CCCCeEEEEECCCCcEEEccccccC--CccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 8899999999998876533321111 11122122 356899999999999999999999887753
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.39 E-value=0.00066 Score=55.32 Aligned_cols=218 Identities=19% Similarity=0.154 Sum_probs=115.8
Q ss_pred CCCeEEEeCCCCcEEEEecC---CCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeE
Q 021399 31 DHTPTVWFADNGERLGTYRG---HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKL 107 (313)
Q Consensus 31 d~~i~iw~~~~~~~~~~~~~---H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (313)
++.|..||..+++.+.+..- ..+.+. ..+ +++..+++++.++.+..||..+++.++......+........++.+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~-~~~-~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v 79 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVA-TAV-PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRV 79 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEE-TEE-EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccc-eEE-EeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccc
Confidence 68899999999998887753 223231 122 2455677778999999999999999988776443322223445555
Q ss_pred EEEECCC-ceecc--ccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeec
Q 021399 108 AVITTDP-FMELN--SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES 184 (313)
Q Consensus 108 ~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~ 184 (313)
.+...+. ...++ .....|....... ..............+..++.+..++.|..+|+++++.+-..
T Consensus 80 ~v~~~~~~l~~~d~~tG~~~W~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 80 YVGTSDGSLYALDAKTGKVLWSIYLTSS-----------PPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EEEETTSEEEEEETTTSCEEEEEEE-SS-----------CTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEE
T ss_pred ccccceeeeEecccCCcceeeeeccccc-----------cccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEe
Confidence 5554332 11111 1111121100000 00000111112223667888888999999999999876544
Q ss_pred ccccCce-------eceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCce
Q 021399 185 DKETGHK-------KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASA 257 (313)
Q Consensus 185 ~~~~~h~-------~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 257 (313)
....... ..+..-....++ .+..++.++.+.-+|+++++.+-+.. ...... ...+.++.++++. . ...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~-~-~~~ 223 (238)
T PF13360_consen 149 PVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTS-S-DGR 223 (238)
T ss_dssp ESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEE-T-TTE
T ss_pred ecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCCccC-CceeeCCEEEEEe-C-CCE
Confidence 3221111 112222233344 67777777754334999998654322 222222 1345566666654 2 233
Q ss_pred eEeeccCCC
Q 021399 258 VTTTDHRAG 266 (313)
Q Consensus 258 ~~~~~~~~~ 266 (313)
++.+|.+++
T Consensus 224 l~~~d~~tG 232 (238)
T PF13360_consen 224 LYALDLKTG 232 (238)
T ss_dssp EEEEETTTT
T ss_pred EEEEECCCC
Confidence 444444443
No 300
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.39 E-value=0.00016 Score=59.88 Aligned_cols=183 Identities=20% Similarity=0.254 Sum_probs=108.3
Q ss_pred EEEEccCCCEEEEeeC-----CCCeEEEeCC-CCcEEEEecCCCCceEEEEECCCCCeEEEe--eC-----CCcEEE---
Q 021399 15 YLKYNKDGDLLFSCAK-----DHTPTVWFAD-NGERLGTYRGHNGAVWCCDVSRDSMTLITG--SA-----DQTAKL--- 78 (313)
Q Consensus 15 ~~~fs~~g~~l~s~s~-----d~~i~iw~~~-~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~--s~-----D~~v~v--- 78 (313)
.-.||+||++|++.-. .|.|-|||.. ..+.+.++..|.=.=..+.+.|||+.|+.+ |- .|..|+
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 3689999999999755 4789999999 667788888765444456788999665553 21 134443
Q ss_pred --------EECCCCeEEEEecC-----CCCeeEEEeecCCeEEEEECCCc--eeccccceeeeeeeCCCCCCCceEEEec
Q 021399 79 --------WNVETGAQLFTFNF-----DSPARSVDFAVGDKLAVITTDPF--MELNSAIHVKRIARDPADQGGESVLILK 143 (313)
Q Consensus 79 --------Wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (313)
-|..+++.+..... ..++..+.+..++.++......- ......+... . .+.....+.
T Consensus 135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~-----~---~g~~~~~~~ 206 (305)
T PF07433_consen 135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALH-----R---RGGALRLLP 206 (305)
T ss_pred hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEE-----c---CCCcceecc
Confidence 23344444433222 22455555666655554432100 0000000000 0 011111111
Q ss_pred -------CCCCceEEEEEccCCCEE-EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC
Q 021399 144 -------GPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL 211 (313)
Q Consensus 144 -------~~~~~i~~~~~~~~~~~i-~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~ 211 (313)
.-.+.+-++++++++..+ +|+=..+.+.+||..++..+.... -..++.++..+++ +++|.+.
T Consensus 207 ~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~-----l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 207 APEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP-----LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred CChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc-----cCceeeeeecCCc-eEEeCCC
Confidence 223568899999998877 555578899999999998776542 3467888887777 6666654
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.38 E-value=4.1e-05 Score=69.47 Aligned_cols=211 Identities=12% Similarity=0.098 Sum_probs=135.8
Q ss_pred ccccccccceeEEEEccC------------CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECC---CC-CeE
Q 021399 4 ILMKGHERPLTYLKYNKD------------GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR---DS-MTL 67 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~------------g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~---~~-~~l 67 (313)
+.+.-|...|+.++|.|- -..|+++.-.|.|.+||+..+..+..+..|.++|..++|-+ +. ..|
T Consensus 49 qsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~L 128 (1062)
T KOG1912|consen 49 QSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVL 128 (1062)
T ss_pred hccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchhee
Confidence 356668888999999764 23567777789999999999999989999999999998854 33 356
Q ss_pred EEeeCCCcEEEEECCCCeEEEEecCCCCee-EEEeec--CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC
Q 021399 68 ITGSADQTAKLWNVETGAQLFTFNFDSPAR-SVDFAV--GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 144 (313)
Q Consensus 68 ~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (313)
+.-..-.++-+|+..+|+..+.......+. ++.+.| ...+++.+..++...... +...+.+..++....-..
T Consensus 129 laIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~-----l~~sep~~pgk~~qI~sd 203 (1062)
T KOG1912|consen 129 LAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD-----LGLSEPDVPGKEFQITSD 203 (1062)
T ss_pred EEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec-----cCCCCCCCCceeEEEecC
Confidence 666677899999999999988887654443 355555 344555444333211110 011111111111111111
Q ss_pred CCC--------------------c-----eEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEE
Q 021399 145 PQG--------------------R-----INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199 (313)
Q Consensus 145 ~~~--------------------~-----i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~ 199 (313)
|.. . ....+|+|..+.++....-..+.++|++-..++..+.. .++.+.-+.+
T Consensus 204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi---er~~akfv~v 280 (1062)
T KOG1912|consen 204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI---ERGGAKFVDV 280 (1062)
T ss_pred ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe---ccCCcceeEe
Confidence 110 0 11355788877777777788899999988777766543 2333444444
Q ss_pred CC--CCCEEEEeeCCCcEEEEECCC
Q 021399 200 AA--DGSHFLTGSLDKSAKLWDART 222 (313)
Q Consensus 200 s~--~~~~l~s~s~dg~i~iwd~~~ 222 (313)
-| +...|.+.-.||.+.+|-.+.
T Consensus 281 lP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 281 LPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred ccCCCcceEEEEecCCeEEEEEeec
Confidence 44 455699999999999996554
No 302
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.31 E-value=7e-05 Score=59.76 Aligned_cols=156 Identities=11% Similarity=0.022 Sum_probs=99.7
Q ss_pred cccc--eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE--EE-EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 9 HERP--LTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LG-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 9 h~~~--v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~--~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
|... +..+.+++|++++++.+....|-.|.+++... +. ....-++.=++.+|+..+..||++.+||++.|||++.
T Consensus 155 h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~ 234 (344)
T KOG4532|consen 155 HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRN 234 (344)
T ss_pred eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecc
Confidence 4443 67899999999999999989999997775432 23 2333445567889999999999999999999999986
Q ss_pred CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC--CEE
Q 021399 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN--RTI 161 (313)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~i 161 (313)
....... ....-..|.+.+..+.|++.| ..+
T Consensus 235 ~~tpm~~-----------------------------------------------~sstrp~hnGa~R~c~Fsl~g~lDLL 267 (344)
T KOG4532|consen 235 MATPMAE-----------------------------------------------ISSTRPHHNGAFRVCRFSLYGLLDLL 267 (344)
T ss_pred cccchhh-----------------------------------------------hcccCCCCCCceEEEEecCCCcceEE
Confidence 4321000 000112366777777777654 245
Q ss_pred EEeeCCCeEEEEECCCCceeeeccccc----Cce-eceEEEEECCCCCEEEEeeC
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKET----GHK-KTITSLAKAADGSHFLTGSL 211 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~----~h~-~~v~~~~~s~~~~~l~s~s~ 211 (313)
+..-.-+.+++.|+++.+..+.+.... .|. ..+..-.|+.++..+.+.+.
T Consensus 268 f~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 268 FISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred EEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 555566889999998876544332111 121 23555555555554444443
No 303
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.29 E-value=1.9e-06 Score=77.41 Aligned_cols=172 Identities=17% Similarity=0.310 Sum_probs=96.2
Q ss_pred cccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCC-----------------------------------------
Q 021399 5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNG----------------------------------------- 42 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~----------------------------------------- 42 (313)
+|.||...|+.+.|+|.- ..|++++.|..+..||....
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r 188 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLR 188 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEecc
Confidence 577788788877777654 47777777777777765532
Q ss_pred ---cEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeE--EEEecCCCCeeEEEeec-CCeEEEEECCCc
Q 021399 43 ---ERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQ--LFTFNFDSPARSVDFAV-GDKLAVITTDPF 115 (313)
Q Consensus 43 ---~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 115 (313)
.++..+++|...|..++|+.- -..+++++.|++|+.||.+.... ........++--..+.| ++..+.....+.
T Consensus 189 ~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~ 268 (1081)
T KOG0309|consen 189 KGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGG 268 (1081)
T ss_pred CCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCC
Confidence 234455677777777777642 23688999999999999864321 12222222222222222 221111110000
Q ss_pred eeccccc-eeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC----------CCEEEEeeCCCeEEEEECCC
Q 021399 116 MELNSAI-HVKRIARDPADQGGESVLILKGPQGRINRAVWGPL----------NRTIISAGEDAIVRIWDTET 177 (313)
Q Consensus 116 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----------~~~i~t~~~d~~i~lwd~~~ 177 (313)
..+.... ...+..+ ..-....++..+.||...|....|-.. +-.++|=+.|..+|+|.+.+
T Consensus 269 n~v~~~~c~n~d~e~-n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 269 NMVPQLRCENSDLEW-NVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeeeeccccchhhhh-ccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 0000000 0000000 001134678889999988776666422 23689999999999998754
No 304
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00038 Score=64.15 Aligned_cols=203 Identities=13% Similarity=0.089 Sum_probs=118.5
Q ss_pred EEccCCCEEEEeeCCCCeEEEeCCCCc-EEEEecCCCCc-eEEEEECCCCCeEEEeeCCC-----cEEEEECCCCeEEEE
Q 021399 17 KYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGA-VWCCDVSRDSMTLITGSADQ-----TAKLWNVETGAQLFT 89 (313)
Q Consensus 17 ~fs~~g~~l~s~s~d~~i~iw~~~~~~-~~~~~~~H~~~-V~~~~~~~~~~~l~s~s~D~-----~v~vWd~~~~~~~~~ 89 (313)
+|++.+..++-|+.||.|.+.+ .+- .++.|++|... |..+..-.+.++|++-+.|+ .++|||++..+.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~--- 104 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN--SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDK--- 104 (933)
T ss_pred EEcCCCceEEEeeccccEEEec--ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCC---
Confidence 3588899999999999988775 333 34788888887 55554443335788877765 489999864320
Q ss_pred ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe
Q 021399 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (313)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~ 169 (313)
+.++..+. ..++.... ......++..++.+.+-..+|+|=.+|.
T Consensus 105 ---n~sP~c~~-----------------------~~ri~~~~----------np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~ 148 (933)
T KOG2114|consen 105 ---NNSPQCLY-----------------------EHRIFTIK----------NPTNPSPASSLAVSEDLKTIVCGFTNGL 148 (933)
T ss_pred ---CCCcceee-----------------------eeeeeccC----------CCCCCCcceEEEEEccccEEEEEecCcE
Confidence 00000000 00000000 0001235566677777778999999999
Q ss_pred EEEEE--C-CCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEE-Ee-cCCceeEEEeccCC
Q 021399 170 VRIWD--T-ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT-YV-TERPVNAVTMSPLL 244 (313)
Q Consensus 170 i~lwd--~-~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~-~~~~~~~~~~~p~~ 244 (313)
|..+. + +... . +......-+..|+.+++..++..++-...-..|.+|.+....+... +. +..+++|.++++..
T Consensus 149 V~~~~GDi~RDrg-s-r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t 226 (933)
T KOG2114|consen 149 VICYKGDILRDRG-S-RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT 226 (933)
T ss_pred EEEEcCcchhccc-c-ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCC
Confidence 98874 1 1111 1 1122223467899999998888722222235688998874332333 32 35578999998877
Q ss_pred CEEEEcccccCceeEeecc
Q 021399 245 DHVVLGGGQDASAVTTTDH 263 (313)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~ 263 (313)
.+++.++ +....++..|.
T Consensus 227 ~qfIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 227 YQFICAG-SEFLYFYDSDG 244 (933)
T ss_pred ccEEEec-CceEEEEcCCC
Confidence 7655554 33333444443
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.19 E-value=1.2e-05 Score=63.69 Aligned_cols=72 Identities=21% Similarity=0.315 Sum_probs=60.0
Q ss_pred ceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCc-EEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCC
Q 021399 12 PLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 12 ~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~-~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~ 83 (313)
.|.+++-+|.- +.+++|+.||.+-+||..... ....+++|+.+++-+-|+|. ++.|++++.||.+--||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 48888888865 466677889999999988774 34567899999999999985 56899999999999999765
No 306
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.17 E-value=1.1e-05 Score=71.12 Aligned_cols=74 Identities=11% Similarity=0.066 Sum_probs=62.0
Q ss_pred cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
....|.|++++|+.+.|+.|..||.|.+||...+... +.-+.-..+.++|+|+|..++.|+.-|.+++||+.-+
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 4567899999999999999999999999998776443 2233445678999999999999999999999997643
No 307
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.15 E-value=0.00014 Score=64.26 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=61.2
Q ss_pred CCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC
Q 021399 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 223 (313)
Q Consensus 145 ~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~ 223 (313)
..+.+.+++++|++..++.|..||.|.+||...+..... ...-..+.++|+|+|..+++|+.-|.+.+||+.-.
T Consensus 258 L~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-----ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 258 LPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-----KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred cCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-----eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 356788999999999999999999999999876543221 13445788999999999999999999999998643
No 308
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.13 E-value=5.2e-05 Score=61.72 Aligned_cols=135 Identities=19% Similarity=0.265 Sum_probs=82.4
Q ss_pred CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeee
Q 021399 50 GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR 129 (313)
Q Consensus 50 ~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (313)
+|..-+.+++|+.|.+.++| +.|-.|-+|+++-....+. .+++.|.
T Consensus 170 aH~yhiNSiS~NsD~et~lS-aDdLrINLWnl~i~D~sFn--------IVDiKP~------------------------- 215 (460)
T COG5170 170 AHPYHINSISFNSDKETLLS-ADDLRINLWNLEIIDGSFN--------IVDIKPH------------------------- 215 (460)
T ss_pred cceeEeeeeeecCchheeee-ccceeeeeccccccCCceE--------EEeccCc-------------------------
Confidence 56677888999988888777 4577888998764221110 0000000
Q ss_pred CCCCCCCceEEEecCCCCceEEEEEccCC-CEEEEeeCCCeEEEEECCCCceeee----ccc---c------cCceeceE
Q 021399 130 DPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGKLLKE----SDK---E------TGHKKTIT 195 (313)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~----~~~---~------~~h~~~v~ 195 (313)
.++.-...|++..|+|.. ..+.-.+..|.|+|.|+++..+... +.. . .+-...|.
T Consensus 216 -----------nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSIS 284 (460)
T COG5170 216 -----------NMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSIS 284 (460)
T ss_pred -----------cHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhc
Confidence 000001235566677764 3455667789999999985432211 000 0 11224577
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEECCC-CcEEEEEe
Q 021399 196 SLAKAADGSHFLTGSLDKSAKLWDART-LELIKTYV 230 (313)
Q Consensus 196 ~~~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~ 230 (313)
.+.|+++|.+|++-+. -++++||.+. ..|+.++.
T Consensus 285 D~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 285 DFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred ceEEcCCCcEEEEecc-ceEEEEecccccCCceeec
Confidence 8899999999987765 5799999987 46777773
No 309
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.12 E-value=0.0014 Score=53.42 Aligned_cols=192 Identities=21% Similarity=0.242 Sum_probs=102.8
Q ss_pred cCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe-cCCCC---
Q 021399 20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-NFDSP--- 95 (313)
Q Consensus 20 ~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~-~~~~~--- 95 (313)
+++.+++.++.++.+..||..+|+.+.++.. .+.+...-.. ++..++.+..|+.+..+|..+++.++.. ....+
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred EeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee-cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 3677888889999999999999999887765 2222111111 2345666678889999999999998874 32211
Q ss_pred ---eeEEEeecCCeEEEEECCC-ceeccc--cceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe
Q 021399 96 ---ARSVDFAVGDKLAVITTDP-FMELNS--AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (313)
Q Consensus 96 ---~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~ 169 (313)
.....+. ++.+++...+. ...++. ....+..... ..........+ ..+..-.....+ .+..++.++.
T Consensus 112 ~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~-~v~~~~~~g~ 184 (238)
T PF13360_consen 112 VRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKLLWKYPVG-EPRGSSPISSF----SDINGSPVISDG-RVYVSSGDGR 184 (238)
T ss_dssp TB--SEEEEE-TTEEEEEETCSEEEEEETTTTEEEEEEESS-TT-SS--EEEE----TTEEEEEECCTT-EEEEECCTSS
T ss_pred cccccCceEe-cCEEEEEeccCcEEEEecCCCcEEEEeecC-CCCCCcceeee----cccccceEEECC-EEEEEcCCCe
Confidence 1111111 44444444222 111111 1111111110 00000000000 011122222234 5666666664
Q ss_pred -EEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEE
Q 021399 170 -VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227 (313)
Q Consensus 170 -i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 227 (313)
+.+ |..+++.+-... . + ....+ ...++..++.++.++.+..||+++++.+-
T Consensus 185 ~~~~-d~~tg~~~w~~~--~-~--~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 185 VVAV-DLATGEKLWSKP--I-S--GIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEEE-ETTTTEEEEEEC--S-S---ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EEEE-ECCCCCEEEEec--C-C--CccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 556 999987442111 1 1 12221 34667788888899999999999998764
No 310
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.09 E-value=1.2e-05 Score=44.35 Aligned_cols=38 Identities=42% Similarity=0.601 Sum_probs=34.2
Q ss_pred cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399 43 ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (313)
Q Consensus 43 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd 80 (313)
+....+.+|...|.++.|+++++.+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45667788999999999999989999999999999996
No 311
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.08 E-value=3.2e-05 Score=61.35 Aligned_cols=72 Identities=25% Similarity=0.351 Sum_probs=56.3
Q ss_pred eEEEEEccCCC-EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC-CCCEEEEeeCCCcEEEEECCC
Q 021399 149 INRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDART 222 (313)
Q Consensus 149 i~~~~~~~~~~-~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd~~~ 222 (313)
+..++-+|..+ .+++|++||.+-|||.+..... ......|+..+..+-|+| ++..|++++.||.+..||..+
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p--~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP--VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEcccccch--HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 66666677654 5677889999999999876432 122346999999999987 577899999999999999874
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.07 E-value=0.0046 Score=51.42 Aligned_cols=232 Identities=13% Similarity=0.061 Sum_probs=131.1
Q ss_pred EEEEccC-CCEEEEeeCC-CCeEEEeCCCCcEEEEecCCCCceE--EEEECCCCCeEEEe-----eCCCcEEEEECC-CC
Q 021399 15 YLKYNKD-GDLLFSCAKD-HTPTVWFADNGERLGTYRGHNGAVW--CCDVSRDSMTLITG-----SADQTAKLWNVE-TG 84 (313)
Q Consensus 15 ~~~fs~~-g~~l~s~s~d-~~i~iw~~~~~~~~~~~~~H~~~V~--~~~~~~~~~~l~s~-----s~D~~v~vWd~~-~~ 84 (313)
.++.+|+ +..++-+--- ....+||..+++....+..-.+.-+ -..|++||++|++. ...|.|-|||.. +-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 4667884 4445545443 4467889999988877654443332 25799999998884 345889999998 33
Q ss_pred eEEEEec-CCCCeeEEEeecCCeEEEEECCCce--------eccccceeeeeeeCCCCCCCceEEE--e--cCCCCceEE
Q 021399 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFM--------ELNSAIHVKRIARDPADQGGESVLI--L--KGPQGRINR 151 (313)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~i~~ 151 (313)
+.+-.+. +.-..+.+.+.++++.+++.+.... +++....--.+.+ ....+++.+.. + ..|+..|.-
T Consensus 89 ~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~-ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVY-LDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred EEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEE-EecCCCceeeeeecCccccccceee
Confidence 4444443 3345667777887744444332211 1111000000110 00122333332 3 346677888
Q ss_pred EEEccCCCEEEEeeCCCe-------EEEEECCCCceeeeccc----ccCceeceEEEEECCCCCEEEE-eeCCCcEEEEE
Q 021399 152 AVWGPLNRTIISAGEDAI-------VRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWD 219 (313)
Q Consensus 152 ~~~~~~~~~i~t~~~d~~-------i~lwd~~~~~~~~~~~~----~~~h~~~v~~~~~s~~~~~l~s-~s~dg~i~iwd 219 (313)
+++.++|..++..-..+. |-+++... .+..+.. ...-...+-++++++++..++. +=.-+.+.+||
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d 245 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWD 245 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEE
Confidence 888888775554433332 44444332 1111111 0123467899999999987754 44688899999
Q ss_pred CCCCcEEEEEecCCceeEEEeccCCCEEEEccc
Q 021399 220 ARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 252 (313)
.++++.+...... .+..++-.+.+ ++++.|
T Consensus 246 ~~tg~~~~~~~l~-D~cGva~~~~~--f~~ssG 275 (305)
T PF07433_consen 246 AATGRLLGSVPLP-DACGVAPTDDG--FLVSSG 275 (305)
T ss_pred CCCCCEeeccccC-ceeeeeecCCc--eEEeCC
Confidence 9999998765432 34555544444 444444
No 313
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=6.1e-05 Score=64.24 Aligned_cols=222 Identities=18% Similarity=0.130 Sum_probs=126.6
Q ss_pred ccccccceeEEEEccCCCEEEEeeC-CCCeEEEeCCCCcEEEEecC--CCCceEEEEECCCC----CeEEEeeCCCcEEE
Q 021399 6 MKGHERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRG--HNGAVWCCDVSRDS----MTLITGSADQTAKL 78 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s~s~-d~~i~iw~~~~~~~~~~~~~--H~~~V~~~~~~~~~----~~l~s~s~D~~v~v 78 (313)
++.|...+.+++.+-+|-++.|.+. |+.+|++|+++-..+.-++- -.+.+.. +...| .+.++.-.++.+.+
T Consensus 49 FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w--v~skGd~~s~IAVs~~~sg~i~V 126 (558)
T KOG0882|consen 49 FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW--VTSKGDKISLIAVSLFKSGKIFV 126 (558)
T ss_pred hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE--ecCCCCeeeeEEeecccCCCcEE
Confidence 4567777888888999999999777 99999999887655432221 1222221 11122 22333346788999
Q ss_pred EECCCCeE-E--EEecCCCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeC---CCCCCCceEEEecCCCCceEE
Q 021399 79 WNVETGAQ-L--FTFNFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARD---PADQGGESVLILKGPQGRINR 151 (313)
Q Consensus 79 Wd~~~~~~-~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~ 151 (313)
+|-....+ . ....+..++..+.+.+- +..+.....+....+.........+. .......-+..+.-......+
T Consensus 127 vD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts 206 (558)
T KOG0882|consen 127 VDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTS 206 (558)
T ss_pred ECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccc
Confidence 98755432 1 12223456665555542 22221111111111111000000000 000000001111112345578
Q ss_pred EEEccCCCEEEEeeCCCeEEEEECCCCceeeeccccc-----------------------------Ccee-ceEEEEECC
Q 021399 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET-----------------------------GHKK-TITSLAKAA 201 (313)
Q Consensus 152 ~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~-----------------------------~h~~-~v~~~~~s~ 201 (313)
+.++|.+..+.+-+.|.+|++++.+++++++.+.... -|.. .-+.+.|..
T Consensus 207 ~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde 286 (558)
T KOG0882|consen 207 FEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE 286 (558)
T ss_pred eEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC
Confidence 8999999999999999999999999998777554211 0111 123456888
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 202 DGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 202 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
.|++|+-|+.=| |++.++.++.+++.+-
T Consensus 287 s~~flly~t~~g-ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 287 SGNFLLYGTILG-IKVINLDTNTVVRILG 314 (558)
T ss_pred CCCEEEeeccee-EEEEEeecCeEEEEec
Confidence 899999888765 8999999999988874
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.00052 Score=62.80 Aligned_cols=160 Identities=18% Similarity=0.262 Sum_probs=105.0
Q ss_pred cccccccceeEEEEccC-------------CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC-----CCe
Q 021399 5 LMKGHERPLTYLKYNKD-------------GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-----SMT 66 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~-------------g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~-----~~~ 66 (313)
.|..|.+.|.-..+.-+ |++++|||.||+|.|-..-+.+...++.- ..++.+++++|+ .+.
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~ 131 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQ 131 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhh
Confidence 35567777766665555 99999999999999998888877666654 457899999997 457
Q ss_pred EEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCC
Q 021399 67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 146 (313)
Q Consensus 67 l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (313)
|++||.-| +.+..-. . ++. ...+ .+....
T Consensus 132 fv~GG~ag-lvL~er~-w-------lgn-----------------------------------------k~~v-~l~~~e 160 (846)
T KOG2066|consen 132 FVSGGMAG-LVLSERN-W-------LGN-----------------------------------------KDSV-VLSEGE 160 (846)
T ss_pred eeecCcce-EEEehhh-h-------hcC-----------------------------------------ccce-eeecCc
Confidence 88988877 5444311 0 000 0000 223345
Q ss_pred CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccC---ceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETG---HKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (313)
Q Consensus 147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~ 221 (313)
++|.++.|. |++||=++++| |+++|+.+++.+..+..... -..-...+.|.++. .++-| ...+|++..++
T Consensus 161 G~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 161 GPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIG-WGDSVKICSIK 233 (846)
T ss_pred cceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEe-cCCeEEEEEEe
Confidence 788889886 56888888877 79999988877655543211 01123456787654 45544 34468888776
No 315
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.98 E-value=0.0063 Score=49.94 Aligned_cols=184 Identities=15% Similarity=0.098 Sum_probs=104.9
Q ss_pred eeEEEEc-cCCCEEEEeeCCCCeEEEeCCCCcEEEEecC-----CCCceEEEEECCCCCeEEEeeCC--------CcEEE
Q 021399 13 LTYLKYN-KDGDLLFSCAKDHTPTVWFADNGERLGTYRG-----HNGAVWCCDVSRDSMTLITGSAD--------QTAKL 78 (313)
Q Consensus 13 v~~~~fs-~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-----H~~~V~~~~~~~~~~~l~s~s~D--------~~v~v 78 (313)
...+.+. ++|.+++ +..++ +.++|.++++....+.. .....+.+++.++|++.++.... |.+..
T Consensus 42 ~~G~~~~~~~g~l~v-~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYV-ADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEEEE-EETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEEEE-EEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence 5667777 6655544 55544 45569888864333221 23456889999999988876544 45667
Q ss_pred EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCC--C-CceEEEecCCCCceEEEEEc
Q 021399 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ--G-GESVLILKGPQGRINRAVWG 155 (313)
Q Consensus 79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~i~~~~~~ 155 (313)
++.. ++.......-.....+.|+++++.+.+.... ...++....+.... . ......+....+..-.+++.
T Consensus 120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD 192 (246)
T PF08450_consen 120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF------NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD 192 (246)
T ss_dssp EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT------TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB
T ss_pred ECCC-CeEEEEecCcccccceEECCcchheeecccc------cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc
Confidence 7776 5544433333456778888877655433211 11122221111110 0 01112222223346778899
Q ss_pred cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEE-CCCCCEEEEe
Q 021399 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK-AADGSHFLTG 209 (313)
Q Consensus 156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~-s~~~~~l~s~ 209 (313)
.+|+.+++....+.|.++|.. ++.+..+... ...+++++| .++.+.|...
T Consensus 193 ~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p---~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 193 SDGNLWVADWGGGRIVVFDPD-GKLLREIELP---VPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp TTS-EEEEEETTTEEEEEETT-SCEEEEEE-S---SSSEEEEEEESTTSSEEEEE
T ss_pred CCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC---CCCEEEEEEECCCCCEEEEE
Confidence 999988887788999999987 7777665432 237888888 4665655443
No 316
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.94 E-value=0.00016 Score=66.99 Aligned_cols=137 Identities=17% Similarity=0.209 Sum_probs=92.2
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC---------CCcEEEEECCCCcEEE
Q 021399 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---------DKSAKLWDARTLELIK 227 (313)
Q Consensus 157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---------dg~i~iwd~~~~~~~~ 227 (313)
+++.+.+|...|+|-|-|+++.+.+.++. .|++.+.++. -.|+.|++++. |..|++||+|+.+.+.
T Consensus 186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~---aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~ 260 (1118)
T KOG1275|consen 186 NNRNLFCGDTRGTVFLRDPNSFETIHTFD---AHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS 260 (1118)
T ss_pred cCcEEEeecccceEEeecCCcCceeeeee---ccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccC
Confidence 45678889999999999999888777664 6888888755 56889999875 5678999999988877
Q ss_pred EEecCCceeEEEeccCCCEEEEcccccC-ceeE----eeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399 228 TYVTERPVNAVTMSPLLDHVVLGGGQDA-SAVT----TTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302 (313)
Q Consensus 228 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~ 302 (313)
.+..+.....+-|+|.....++..+..+ ..+. +.+++.+.+ ..+ -..+.+.++.+|++|.-
T Consensus 261 PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~---~v~-----------p~~s~i~~fDiSsn~~a 326 (1118)
T KOG1275|consen 261 PIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVK---MVN-----------PNGSGISAFDISSNGDA 326 (1118)
T ss_pred CcccccCchhhhhcccccceEEEEecccceeeccccccCCCcccee---EEc-----------cCCCcceeEEecCCCce
Confidence 7665544566778887654433222221 1111 112222111 111 12345899999999999
Q ss_pred eEEEEEEEee
Q 021399 303 YGFLLLQINV 312 (313)
Q Consensus 303 ~~~~~~~~~~ 312 (313)
+||...-++|
T Consensus 327 lafgd~~g~v 336 (1118)
T KOG1275|consen 327 LAFGDHEGHV 336 (1118)
T ss_pred EEEecccCcE
Confidence 9998876554
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.93 E-value=0.019 Score=55.46 Aligned_cols=193 Identities=15% Similarity=0.140 Sum_probs=119.0
Q ss_pred CCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECC-Cceecccc----ceeee
Q 021399 52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTD-PFMELNSA----IHVKR 126 (313)
Q Consensus 52 ~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~ 126 (313)
.+.|.++.|..+.+.++.+..+|.|.+-|+++............+..+.|+|+++.++..+. ....+-.. +....
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 46899999998888888888899999999998877777777888999999998777665543 21111000 00000
Q ss_pred -------------eeeCCCC-----CCC-----ceEEEec--C---CCCceEEEEEccCCCEEEE-----eeCCCeEEEE
Q 021399 127 -------------IARDPAD-----QGG-----ESVLILK--G---PQGRINRAVWGPLNRTIIS-----AGEDAIVRIW 173 (313)
Q Consensus 127 -------------~~~~~~~-----~~~-----~~~~~~~--~---~~~~i~~~~~~~~~~~i~t-----~~~d~~i~lw 173 (313)
+.+.... ..+ +.....+ + -.+.=.++.|--+|.++++ ..+...|++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 1111000 000 0000000 0 0111245889999999888 3334799999
Q ss_pred ECCCCceeeecccccCceeceEEEEECCCCCEEEEee---CCCcEEEEECCCCcEEEEE----e-cCCceeEEEeccCCC
Q 021399 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDARTLELIKTY----V-TERPVNAVTMSPLLD 245 (313)
Q Consensus 174 d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~----~-~~~~~~~~~~~p~~~ 245 (313)
|.+ +.+-..-. .....-.+++|-|.|..+++-. .|+.|.++.... ..-..+ . ...++..++|+.+++
T Consensus 228 drE-g~Lns~se---~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG-L~hg~f~l~~p~de~~ve~L~Wns~sd 302 (1265)
T KOG1920|consen 228 DRE-GALNSTSE---PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG-LRHGEFVLPFPLDEKEVEELAWNSNSD 302 (1265)
T ss_pred ccc-chhhcccC---cccccccceeecCCCCeEeeeeecCCCCcEEEEecCC-ccccccccCCcccccchheeeecCCCC
Confidence 987 54322211 2234557899999999988753 466899997543 222222 2 233488999999998
Q ss_pred EEEE
Q 021399 246 HVVL 249 (313)
Q Consensus 246 ~~~~ 249 (313)
.+++
T Consensus 303 iLAv 306 (1265)
T KOG1920|consen 303 ILAV 306 (1265)
T ss_pred ceee
Confidence 7766
No 318
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.90 E-value=0.0082 Score=48.72 Aligned_cols=168 Identities=14% Similarity=0.109 Sum_probs=97.8
Q ss_pred eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC-C------CCceEEEEECCC------CCeEEEeeCCCcEEEEE
Q 021399 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-H------NGAVWCCDVSRD------SMTLITGSADQTAKLWN 80 (313)
Q Consensus 14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-H------~~~V~~~~~~~~------~~~l~s~s~D~~v~vWd 80 (313)
.-++||||+..||.+...|+|+++|+...+. ..+.. + ..+|-.+.|-+- ...|+.-..+|.++-+-
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSEL-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccccee-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 4689999999999999999999999875433 23321 1 245555555332 12455556777777665
Q ss_pred CCCC-----eEEEEec----CCCCeeEEEeecCCeEEEEECCCceec------cccceeeeeeeCCC----------CCC
Q 021399 81 VETG-----AQLFTFN----FDSPARSVDFAVGDKLAVITTDPFMEL------NSAIHVKRIARDPA----------DQG 135 (313)
Q Consensus 81 ~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~----------~~~ 135 (313)
+..+ +....+. +...+..+.++++..++++........ ...+..|++..+.. ...
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~ 205 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDIT 205 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcccc
Confidence 4221 1222332 245677777888766665554321110 11222333322111 000
Q ss_pred --C-----ceEE---Ee---cCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceee
Q 021399 136 --G-----ESVL---IL---KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK 182 (313)
Q Consensus 136 --~-----~~~~---~~---~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~ 182 (313)
. ..+. .+ ...+..|..+..+|++..+|+..-+|.|.||++.+-++.+
T Consensus 206 ~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 206 ASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred ccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhc
Confidence 0 0000 00 1134568899999999999999999999999987644433
No 319
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=2.2e-05 Score=72.29 Aligned_cols=146 Identities=18% Similarity=0.233 Sum_probs=96.3
Q ss_pred EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccce
Q 021399 44 RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIH 123 (313)
Q Consensus 44 ~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (313)
..++|+.|...-+|++|+-+.+.++.|+..|.|+++++.+|.....
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s---------------------------------- 1138 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEES---------------------------------- 1138 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccc----------------------------------
Confidence 3457888998999999999999999999999999999988753211
Q ss_pred eeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC--CCeEEEEECCCCceeeecccccCce-eceEEEEEC
Q 021399 124 VKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE--DAIVRIWDTETGKLLKESDKETGHK-KTITSLAKA 200 (313)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~--d~~i~lwd~~~~~~~~~~~~~~~h~-~~v~~~~~s 200 (313)
..+|++.++-+.-+.+|...++.+. ..-..+|++.+- ... .|+ ..-.++.|+
T Consensus 1139 ------------------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~--~~~-----~Hsf~ed~~vkFs 1193 (1516)
T KOG1832|consen 1139 ------------------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST--GGP-----RHSFDEDKAVKFS 1193 (1516)
T ss_pred ------------------ccccccccccccccCCcceeeeeccccCchHHHhccccc--cCc-----cccccccceeehh
Confidence 1235555555555555665555443 234678997641 111 132 234566776
Q ss_pred CCCCEEEEeeCCCcEEEEECCCCcEEEEEec-----CCceeEEEeccCCCEEE
Q 021399 201 ADGSHFLTGSLDKSAKLWDARTLELIKTYVT-----ERPVNAVTMSPLLDHVV 248 (313)
Q Consensus 201 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~ 248 (313)
.....-+.|..-....+||++|+.++.++.. ...-+++.|+|...-++
T Consensus 1194 n~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1194 NSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred hhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 5544444555545688999999988777532 22357788999876544
No 320
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.85 E-value=0.0073 Score=53.39 Aligned_cols=189 Identities=13% Similarity=0.142 Sum_probs=100.4
Q ss_pred CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEE-EEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEE
Q 021399 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWC-CDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVD 100 (313)
Q Consensus 22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~-~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~ 100 (313)
+..++.++.++.+.-+|.++|+.+.+.+... .+.+ ..+. +..++.+..++.+..+|.++++.++......+.....
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~ssP~v~--~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAG-EALSRPVVS--DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccccCCC-ceecCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 4566778888999999999999887776433 2221 1222 3356667788999999999999988775432211000
Q ss_pred -----eecCCeEEEEECCCce-ec--cccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc--CCCEEEEeeCCCeE
Q 021399 101 -----FAVGDKLAVITTDPFM-EL--NSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP--LNRTIISAGEDAIV 170 (313)
Q Consensus 101 -----~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~i~t~~~d~~i 170 (313)
...++.+.+...+... .+ ......|........ ..... .+...+.-+| .+..+..++.++.+
T Consensus 197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~-~~~~~-------~~~~~~~~sP~v~~~~vy~~~~~g~l 268 (394)
T PRK11138 197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPT-GATEI-------DRLVDVDTTPVVVGGVVYALAYNGNL 268 (394)
T ss_pred CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCC-Cccch-------hcccccCCCcEEECCEEEEEEcCCeE
Confidence 0012233332222111 00 000011111000000 00000 0000000011 24456667788999
Q ss_pred EEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEE
Q 021399 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228 (313)
Q Consensus 171 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 228 (313)
..+|..+++.+=+... + ....+. ..+..++.++.||.+..+|.++++.+-.
T Consensus 269 ~ald~~tG~~~W~~~~--~---~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~ 319 (394)
T PRK11138 269 VALDLRSGQIVWKREY--G---SVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWS 319 (394)
T ss_pred EEEECCCCCEEEeecC--C---CccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEc
Confidence 9999999876432221 1 111122 2456788888999999999999887544
No 321
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=0.00013 Score=64.84 Aligned_cols=92 Identities=20% Similarity=0.185 Sum_probs=76.4
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceE-EEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-CCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~-~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~ 88 (313)
...+.-+.|+|.-+.||.+..+|.+.++.+. -..+.++.-|...|+ +++|.|||++++.|=.||+|++-|++++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 3456789999999999999999999999987 667888988888887 99999999999999999999999999987776
Q ss_pred E--ecCCCCeeEEEee
Q 021399 89 T--FNFDSPARSVDFA 102 (313)
Q Consensus 89 ~--~~~~~~~~~~~~~ 102 (313)
. +....++....|.
T Consensus 99 ~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSVETDISKGIWD 114 (665)
T ss_pred ccccccccchheeecc
Confidence 5 3334445555443
No 322
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00084 Score=56.70 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=57.9
Q ss_pred EecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceee
Q 021399 47 TYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125 (313)
Q Consensus 47 ~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (313)
-+.+|...|..++|+|.++ ++..++.+.+|+|.|+++...+..+...
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-------------------------------- 235 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-------------------------------- 235 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc--------------------------------
Confidence 3456777899999999887 7888999999999999886544322211
Q ss_pred eeeeCCCCCCCceEEEecCCCCceEEEEEccCC-CEEEEeeCCCeEEEEECCCCc
Q 021399 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIWDTETGK 179 (313)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~i~t~~~d~~i~lwd~~~~~ 179 (313)
..+.+++|..++ .+|..|...|.|.++|++..+
T Consensus 236 ---------------------~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 236 ---------------------NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ---------------------CCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 344556666544 355667788999999987654
No 323
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.76 E-value=0.0033 Score=55.69 Aligned_cols=188 Identities=14% Similarity=0.153 Sum_probs=108.3
Q ss_pred cccccceeEEEEccCCCEEEEeeC---C-CCeEEEeCCCCcEEE--EecCCCCceEEEEECCCCCe-EEEeeCCCcEEEE
Q 021399 7 KGHERPLTYLKYNKDGDLLFSCAK---D-HTPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMT-LITGSADQTAKLW 79 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s~s~---d-~~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~-l~s~s~D~~v~vW 79 (313)
..-...+..-+|+|+++.++--+. . ..+.++++++++... .+.++. ...+|+|||+. +++...||...||
T Consensus 189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCCCEEEEEECCCCCccEE
Confidence 333445566789999988776532 2 358888998886543 344443 44689999975 4566678877666
Q ss_pred EC--CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399 80 NV--ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (313)
Q Consensus 80 d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (313)
-+ .++.... +. ...+.-..-.|+|+
T Consensus 266 ~~dl~~~~~~~-Lt----------------------------------------------------~~~gi~~~Ps~spd 292 (425)
T COG0823 266 LMDLDGKNLPR-LT----------------------------------------------------NGFGINTSPSWSPD 292 (425)
T ss_pred EEcCCCCccee-cc----------------------------------------------------cCCccccCccCCCC
Confidence 43 3322110 00 00011113447888
Q ss_pred CCEEEEee-CCCe--EEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC-Cc--EEEEECCCCcEEEEEec
Q 021399 158 NRTIISAG-EDAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-KS--AKLWDARTLELIKTYVT 231 (313)
Q Consensus 158 ~~~i~t~~-~d~~--i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-g~--i~iwd~~~~~~~~~~~~ 231 (313)
|+.|+-.+ ..|. |.+.|.+.+.. .++....+ .. ..-.++|||++|+..+.. |. |-+.|+.++.-++.+..
T Consensus 293 G~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~--~~-~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 293 GSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGG--GN-SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS 368 (425)
T ss_pred CCEEEEEeCCCCCcceEEECCCCCce-eEeeccCC--CC-cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc
Confidence 88877654 3343 55666665443 22222111 11 155799999999887753 44 56666766554455444
Q ss_pred CCceeEEEeccCCCEEEEccccc
Q 021399 232 ERPVNAVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 232 ~~~~~~~~~~p~~~~~~~~~~~~ 254 (313)
......-++.|++..++..++..
T Consensus 369 ~~~~e~ps~~~ng~~i~~~s~~~ 391 (425)
T COG0823 369 TYLNESPSWAPNGRMIMFSSGQG 391 (425)
T ss_pred cccCCCCCcCCCCceEEEeccCC
Confidence 44445566778887776655443
No 324
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00021 Score=63.64 Aligned_cols=92 Identities=20% Similarity=0.205 Sum_probs=72.1
Q ss_pred CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceE-EEEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 021399 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-SLAKAADGSHFLTGSLDKSAKLWDARTLEL 225 (313)
Q Consensus 147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 225 (313)
..+..+.|+|.-..||.+..+|.|-+..+...+.. .+. -++..++ +++|.|||+.||.|-.||+|++-|.+++..
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlw-tip---~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLW-TIP---IPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccceeE-ecc---CCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 35677889999999999999999988887743332 222 1445555 999999999999999999999999999988
Q ss_pred EEE--EecCCceeEEEecc
Q 021399 226 IKT--YVTERPVNAVTMSP 242 (313)
Q Consensus 226 ~~~--~~~~~~~~~~~~~p 242 (313)
+.. +..+.++..+-|.|
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 877 33455677777754
No 325
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=0.0064 Score=55.87 Aligned_cols=217 Identities=11% Similarity=0.053 Sum_probs=122.6
Q ss_pred eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCC------------CeEEEeeCCCcEEEEE
Q 021399 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS------------MTLITGSADQTAKLWN 80 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~------------~~l~s~s~D~~v~vWd 80 (313)
-.++.|+|.| +|+-|+. ..|.+-|..+.+.+.+++-|...|+.+.|.|.. -+++++...|.|.+||
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d 95 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD 95 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence 4578889877 6665654 577888999999999999999999999997621 2577788889999999
Q ss_pred CCCCeEEEEecC-CCCeeEEEeec---CC-eE-EEEECCCceeccc---cceeeeeeeCCCCCCCceEEEecCCCCceEE
Q 021399 81 VETGAQLFTFNF-DSPARSVDFAV---GD-KL-AVITTDPFMELNS---AIHVKRIARDPADQGGESVLILKGPQGRINR 151 (313)
Q Consensus 81 ~~~~~~~~~~~~-~~~~~~~~~~~---~~-~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (313)
...+..+..+.. ..++..+.|.+ +. .+ +++....+..+++ ...+|.. ........+
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~---------------~ys~~iLs~ 160 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY---------------DYSHEILSC 160 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc---------------ccCCcceee
Confidence 988766655543 34555555543 22 22 2222222222221 1111111 111122233
Q ss_pred EEEccC-CCEEEEeeCCCeEEEEECC-CCc---eeeecccccCcee----------------c---------eEEEEECC
Q 021399 152 AVWGPL-NRTIISAGEDAIVRIWDTE-TGK---LLKESDKETGHKK----------------T---------ITSLAKAA 201 (313)
Q Consensus 152 ~~~~~~-~~~i~t~~~d~~i~lwd~~-~~~---~~~~~~~~~~h~~----------------~---------v~~~~~s~ 201 (313)
..+.|= .+.+..-+..|.+.+.+.- ... .-+++...+.|+. . ...++|+|
T Consensus 161 f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p 240 (1062)
T KOG1912|consen 161 FRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP 240 (1062)
T ss_pred eeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh
Confidence 344432 2344444445655555421 100 0111111111111 1 11234677
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEEecC-CceeEEEeccCCCE
Q 021399 202 DGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDH 246 (313)
Q Consensus 202 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~p~~~~ 246 (313)
.-+.++-...-..+.++|++-..++....-+ ..+..+.+-|+.+.
T Consensus 241 ~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~r 286 (1062)
T KOG1912|consen 241 HWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRR 286 (1062)
T ss_pred hhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCCc
Confidence 6666666667788999999988888776543 34566777776543
No 326
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.72 E-value=5.5e-05 Score=41.47 Aligned_cols=34 Identities=35% Similarity=0.643 Sum_probs=31.2
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEe
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWF 38 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~ 38 (313)
.+..|...|.+++|++++..+++++.|+.+++|+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4667899999999999999999999999999995
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.71 E-value=0.023 Score=54.92 Aligned_cols=203 Identities=13% Similarity=0.098 Sum_probs=112.9
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC----CCCeE
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV----ETGAQ 86 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~----~~~~~ 86 (313)
+.|.++.|-.+..-|+.+..+|.|.+-|.++.... ....-...|.+++|+||.++++-...++++.+-.. -..+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 57899999999999999999999999977765431 11223578999999999999988888888765432 11111
Q ss_pred E----------EEec-------C------------------------CCCeeEEEeecCCeEEEEECCCceeccccceee
Q 021399 87 L----------FTFN-------F------------------------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVK 125 (313)
Q Consensus 87 ~----------~~~~-------~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (313)
+ .... + .....++.|..++++.+++.-........+.++
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 1 0000 0 001123445444433333210000000111111
Q ss_pred eeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe---eCCCeEEEEECCCCceeeecccccCc-eeceEEEEECC
Q 021399 126 RIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA---GEDAIVRIWDTETGKLLKESDKETGH-KKTITSLAKAA 201 (313)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~---~~d~~i~lwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~ 201 (313)
+-. ...+...++ ..+--.++.|-|.|..+++- +.|+.|.++..+ |-.-..+.....- ...+..++|..
T Consensus 228 drE-g~Lns~se~------~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 228 DRE-GALNSTSEP------VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN-GLRHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred ccc-chhhcccCc------ccccccceeecCCCCeEeeeeecCCCCcEEEEecC-CccccccccCCcccccchheeeecC
Confidence 100 000000000 01122468899999988875 356678898854 2211111111112 23389999999
Q ss_pred CCCEEEE---eeCCCcEEEEECCC
Q 021399 202 DGSHFLT---GSLDKSAKLWDART 222 (313)
Q Consensus 202 ~~~~l~s---~s~dg~i~iwd~~~ 222 (313)
+++.|+. ......|++|-+..
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCCceeeeecccccceEEEEEecC
Confidence 9998887 44455599998765
No 328
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.63 E-value=0.039 Score=48.78 Aligned_cols=187 Identities=13% Similarity=0.095 Sum_probs=99.7
Q ss_pred CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCce-----EEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCe
Q 021399 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV-----WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA 96 (313)
Q Consensus 22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V-----~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~ 96 (313)
+..++.+..++.+.-+|.++|+.+..+....... .+... .+..++.++.++.+...|..+++.++......+.
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~ 237 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPT 237 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence 3456667778899999999999988776432111 01111 1234666778899999999998877655322110
Q ss_pred e--------EEEe---ecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee
Q 021399 97 R--------SVDF---AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (313)
Q Consensus 97 ~--------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~ 165 (313)
. .+.. ..++.+.+...+..... .+. ..++.+-... .+..... ...+..+..++
T Consensus 238 ~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~a------ld~------~tG~~~W~~~--~~~~~~~--~~~~~~vy~~~ 301 (394)
T PRK11138 238 GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVA------LDL------RSGQIVWKRE--YGSVNDF--AVDGGRIYLVD 301 (394)
T ss_pred CccchhcccccCCCcEEECCEEEEEEcCCeEEE------EEC------CCCCEEEeec--CCCccCc--EEECCEEEEEc
Confidence 0 0000 11333333332211100 000 0011110000 0000011 11345677788
Q ss_pred CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
.++.+..+|..+++.+=+.... .+ ....+... .+.+++.++.||.+...|.++++.+....
T Consensus 302 ~~g~l~ald~~tG~~~W~~~~~-~~-~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 302 QNDRVYALDTRGGVELWSQSDL-LH-RLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred CCCeEEEEECCCCcEEEccccc-CC-CcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 8999999999888754222111 11 11111112 24678889999999999999999887764
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.60 E-value=0.044 Score=50.20 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=41.1
Q ss_pred CCCCCEEEEeeCCCcEEEEECCC-----CcEEEEEecCCceeEEEeccCCCEEEEccccc
Q 021399 200 AADGSHFLTGSLDKSAKLWDART-----LELIKTYVTERPVNAVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 200 s~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 254 (313)
.++|++... .+++|.+.|.++ .+.+..+........+.++|++.+++++++-+
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCC
Confidence 456665554 257899999998 46677777777889999999999999987644
No 330
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.50 E-value=0.055 Score=47.06 Aligned_cols=253 Identities=13% Similarity=0.091 Sum_probs=121.8
Q ss_pred ccCCCEEEEe---------eCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399 19 NKDGDLLFSC---------AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (313)
Q Consensus 19 s~~g~~l~s~---------s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~ 89 (313)
|||+++++.. +..+...|+|+++++....... ...+....|+|+|+.++-. .++.|.+++..+++..+.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v-~~~nly~~~~~~~~~~~l 78 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFV-RDNNLYLRDLATGQETQL 78 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEE-ETTEEEEESSTTSEEEES
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEE-ecCceEEEECCCCCeEEe
Confidence 6788877763 2346788999999865433333 5677788999999977665 467899999877754432
Q ss_pred ecCC------------------CCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCC---
Q 021399 90 FNFD------------------SPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQG--- 147 (313)
Q Consensus 90 ~~~~------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 147 (313)
.... .....+.|+|+++.++... +. .......+. ......+
T Consensus 79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~-----~~v~~~~~~------------~~~~~~~~yp 141 (353)
T PF00930_consen 79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDE-----REVPEYPLP------------DYSPPDSQYP 141 (353)
T ss_dssp ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE------TTS-EEEEE------------EESSSTESS-
T ss_pred ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECC-----cCCceEEee------------ccCCccccCC
Confidence 2111 1123455666655444321 10 000000000 0000000
Q ss_pred ceEEEEEccCCCEEEEeeCCC--eEEEEECCCCceeee--cccccCceeceEEEEECCCCCEEEEe--eCCC---cEEEE
Q 021399 148 RINRAVWGPLNRTIISAGEDA--IVRIWDTETGKLLKE--SDKETGHKKTITSLAKAADGSHFLTG--SLDK---SAKLW 218 (313)
Q Consensus 148 ~i~~~~~~~~~~~i~t~~~d~--~i~lwd~~~~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~--s~dg---~i~iw 218 (313)
.+..+..... |.... .+.++|+.+++.... ......-...+..+.|.+++..|+.. ..+. .+.+.
T Consensus 142 ~~~~~~YPk~------G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~ 215 (353)
T PF00930_consen 142 EVESIRYPKA------GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLC 215 (353)
T ss_dssp EEEEEE--BT------TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEE
T ss_pred cccccccCCC------CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEE
Confidence 1222222111 22223 355678877654211 10112235678899999999844433 3333 35566
Q ss_pred ECCCCcEEEEEec--CCc---eeEEEec-cCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccce-
Q 021399 219 DARTLELIKTYVT--ERP---VNAVTMS-PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI- 291 (313)
Q Consensus 219 d~~~~~~~~~~~~--~~~---~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V- 291 (313)
|..++++-..... +.- -....+. +++..+ +...+ +.|-.++..++...+... .+....-.|
T Consensus 216 d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~----------l~~s~-~~G~~hly~~~~~~~~~~-~lT~G~~~V~ 283 (353)
T PF00930_consen 216 DASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEF----------LWISE-RDGYRHLYLYDLDGGKPR-QLTSGDWEVT 283 (353)
T ss_dssp EECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEE----------EEEEE-TTSSEEEEEEETTSSEEE-ESS-SSS-EE
T ss_pred ECCCCceeEEEEecCCcceeeecccccccCCCCEE----------EEEEE-cCCCcEEEEEccccccee-ccccCceeec
Confidence 8877655333221 111 1122222 333333 33333 444445555554433321 122123344
Q ss_pred eEEEECCCCCeeEEEEE
Q 021399 292 NALAFNPDGKRYGFLLL 308 (313)
Q Consensus 292 ~~~~fspdgk~~~~~~~ 308 (313)
.-+.++++++.+-|++.
T Consensus 284 ~i~~~d~~~~~iyf~a~ 300 (353)
T PF00930_consen 284 SILGWDEDNNRIYFTAN 300 (353)
T ss_dssp EEEEEECTSSEEEEEES
T ss_pred ccceEcCCCCEEEEEec
Confidence 45888999998888764
No 331
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.49 E-value=0.065 Score=47.54 Aligned_cols=213 Identities=13% Similarity=0.106 Sum_probs=104.2
Q ss_pred EEEccCCCEEEEeeCC----------C-CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 16 LKYNKDGDLLFSCAKD----------H-TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 16 ~~fs~~g~~l~s~s~d----------~-~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
++.+|.|-.||....+ . .|+||+. .|+.+.++.--.+.+.++.|..+. .|+.-..||+++++|+...
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCc
Confidence 4556666666655443 1 4788874 566666654333889999998754 5556689999999998643
Q ss_pred eEEEEecC---CCCeeEE-----EeecCCeEEEEECC-CceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399 85 AQLFTFNF---DSPARSV-----DFAVGDKLAVITTD-PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (313)
Q Consensus 85 ~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (313)
. ...... ...+... .+...+ +++...+ .+..+............+.... .......+........+.
T Consensus 112 ~-~fsl~~~i~~~~v~e~~i~~~~~~~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~--~~~~~~~~~~~~~i~~l~ 187 (410)
T PF04841_consen 112 F-QFSLGEEIEEEKVLECRIFAIWFYKNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPG--LWTKFHWWPSWTVIPLLS 187 (410)
T ss_pred e-eechhhhccccCcccccccccccCCCC-EEEECCCCeEEEEeCccccchhhccccCCC--cccccccccccccceEee
Confidence 3 211110 0111111 111122 3332222 2221111110000000000000 000000011000002233
Q ss_pred cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC--C
Q 021399 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--R 233 (313)
Q Consensus 156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~ 233 (313)
.+....+....++.+.+.+....+. + ...+.+..++.||+|+++|.-..+|.+.+.+.+-.+.+.++... .
T Consensus 188 ~~~~~~i~~~~g~~i~~i~~~~~~~---i----~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~ 260 (410)
T PF04841_consen 188 SDRVVEILLANGETIYIIDENSFKQ---I----DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKS 260 (410)
T ss_pred cCcceEEEEecCCEEEEEEcccccc---c----cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCC
Confidence 3444444455556666444322111 1 12357999999999999999999999999876656665555432 3
Q ss_pred ceeEEEec
Q 021399 234 PVNAVTMS 241 (313)
Q Consensus 234 ~~~~~~~~ 241 (313)
....++|.
T Consensus 261 ~p~~~~WC 268 (410)
T PF04841_consen 261 PPKQMAWC 268 (410)
T ss_pred CCcEEEEE
Confidence 34444443
No 332
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.39 E-value=0.015 Score=51.54 Aligned_cols=96 Identities=18% Similarity=0.165 Sum_probs=59.2
Q ss_pred EEEccCCCEEEEe-eCCC--eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC-CCc--EEEEECCCCcE
Q 021399 152 AVWGPLNRTIISA-GEDA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKS--AKLWDARTLEL 225 (313)
Q Consensus 152 ~~~~~~~~~i~t~-~~d~--~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-dg~--i~iwd~~~~~~ 225 (313)
..|+|+|+.++-+ ..|+ .|++.|+..+... ++....+. -..=.|+|||+.|+-.+. .|. |.+.|++....
T Consensus 243 P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~-~Lt~~~gi---~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 243 PAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLP-RLTNGFGI---NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred ccCCCCCCEEEEEECCCCCccEEEEcCCCCcce-ecccCCcc---ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 4588988877654 3444 4667788766632 23322222 225579999999886654 443 66667776665
Q ss_pred EEEEecCCceeEEEeccCCCEEEEcc
Q 021399 226 IKTYVTERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 226 ~~~~~~~~~~~~~~~~p~~~~~~~~~ 251 (313)
.+.......-..-.|+|+++.+++..
T Consensus 319 ~riT~~~~~~~~p~~SpdG~~i~~~~ 344 (425)
T COG0823 319 TRLTFSGGGNSNPVWSPDGDKIVFES 344 (425)
T ss_pred eEeeccCCCCcCccCCCCCCEEEEEe
Confidence 33322222222677899999988876
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.36 E-value=0.029 Score=51.34 Aligned_cols=182 Identities=12% Similarity=0.166 Sum_probs=103.0
Q ss_pred eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEE--------CCCCCeEEEeeCCCcEEEEECCC--
Q 021399 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--------SRDSMTLITGSADQTAKLWNVET-- 83 (313)
Q Consensus 14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~--------~~~~~~l~s~s~D~~v~vWd~~~-- 83 (313)
..+.++|+|+++++.+.+ .+.+..+..+..-+.. ..+.| .++|+.... .+++|.+.|..+
T Consensus 238 d~v~~spdGk~afvTsyN-------sE~G~tl~em~a~e~d-~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~ 307 (635)
T PRK02888 238 DNVDTDYDGKYAFSTCYN-------SEEGVTLAEMMAAERD-WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAA 307 (635)
T ss_pred ccceECCCCCEEEEeccC-------cccCcceeeeccccCc-eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccc
Confidence 457788888888887642 2223233333221111 22333 346665544 367899999988
Q ss_pred ---CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeee------CCCCCCCceEEEecCCCCceEEEEE
Q 021399 84 ---GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR------DPADQGGESVLILKGPQGRINRAVW 154 (313)
Q Consensus 84 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (313)
.+.+..+........+.++|+++.+++.... +....+.++.. +..+.....+...+-..++. ...|
T Consensus 308 ~~~~~v~~yIPVGKsPHGV~vSPDGkylyVankl----S~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL-HTaF 382 (635)
T PRK02888 308 NAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKL----SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL-HTAF 382 (635)
T ss_pred cCCcceEEEEECCCCccceEECCCCCEEEEeCCC----CCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc-eEEE
Confidence 4566666777788889999998887776531 11112222111 11111111222222233333 3557
Q ss_pred ccCCCEEEEeeCCCeEEEEECCC----------Cceeeec--ccccCceeceEEEEECCCCCEEEEee
Q 021399 155 GPLNRTIISAGEDAIVRIWDTET----------GKLLKES--DKETGHKKTITSLAKAADGSHFLTGS 210 (313)
Q Consensus 155 ~~~~~~i~t~~~d~~i~lwd~~~----------~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~s 210 (313)
.++|+.+.|---|..|-.||+.. ...+.++ ....+|......-.-.+||++|++..
T Consensus 383 Dg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 383 DGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred CCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 88888888888999999999875 2233332 22345655544445678888888764
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.28 E-value=0.033 Score=49.69 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=45.4
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC-----------cEE
Q 021399 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL-----------ELI 226 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~-----------~~~ 226 (313)
|..++..+. +.|.+||..+++.++++.. . .|..+.|+++|++++-.+.+ .+.+++.+.. ..+
T Consensus 117 G~LL~~~~~-~~i~~yDw~~~~~i~~i~v----~-~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f 189 (443)
T PF04053_consen 117 GNLLGVKSS-DFICFYDWETGKLIRRIDV----S-AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAF 189 (443)
T ss_dssp SSSEEEEET-TEEEEE-TTT--EEEEESS------E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGE
T ss_pred CcEEEEECC-CCEEEEEhhHcceeeEEec----C-CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhce
Confidence 455555554 4899999999999888752 2 38999999999999988866 5667654332 022
Q ss_pred EEEec-CCceeEEEeccC
Q 021399 227 KTYVT-ERPVNAVTMSPL 243 (313)
Q Consensus 227 ~~~~~-~~~~~~~~~~p~ 243 (313)
..+.. ...|.+.+|.-+
T Consensus 190 ~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 190 ELIHEISERIKSGCWVED 207 (443)
T ss_dssp EEEEEE-S--SEEEEETT
T ss_pred EEEEEecceeEEEEEEcC
Confidence 22222 456778887654
No 335
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.26 E-value=0.076 Score=43.39 Aligned_cols=186 Identities=13% Similarity=0.048 Sum_probs=110.5
Q ss_pred ccceeEEEEccCCCEEEEeeCCC--CeEEEeCCCCcEEEEecCCC-CceEEEEECCCCCeEEEeeCCCcEEEEECCCCeE
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~--~i~iw~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~ 86 (313)
....+.+.|..+|.++-|.+.-| .|+.+|+++++......-.. -.=..++.. ++++..-.=.+++..+||..+-+.
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE
T ss_pred cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEEEEccccceE
Confidence 34466899988899999998776 68889999998765443211 111223333 233333345678888999988776
Q ss_pred EEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC
Q 021399 87 LFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (313)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~ 166 (313)
+..+.+.... |- ++ .++..++....
T Consensus 123 ~~~~~y~~EG----------------------------WG-------------------------Lt--~dg~~Li~SDG 147 (264)
T PF05096_consen 123 IGTFPYPGEG----------------------------WG-------------------------LT--SDGKRLIMSDG 147 (264)
T ss_dssp EEEEE-SSS------------------------------E-------------------------EE--ECSSCEEEE-S
T ss_pred EEEEecCCcc----------------------------eE-------------------------EE--cCCCEEEEECC
Confidence 6554332111 00 11 12344666666
Q ss_pred CCeEEEEECCCCceeeecccccCc--eeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-------------
Q 021399 167 DAIVRIWDTETGKLLKESDKETGH--KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT------------- 231 (313)
Q Consensus 167 d~~i~lwd~~~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~------------- 231 (313)
...|+.+|.++.+..+++...... -..++.+.+- +|...|-.=....|...|.++|+.+..+..
T Consensus 148 S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~ 226 (264)
T PF05096_consen 148 SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSR 226 (264)
T ss_dssp SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST
T ss_pred ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccc
Confidence 778999998877766655432111 1235556664 565555555566788889999998876621
Q ss_pred ---CCceeEEEeccCCCEEEEccc
Q 021399 232 ---ERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 232 ---~~~~~~~~~~p~~~~~~~~~~ 252 (313)
....|.+|+.|..+.++++|.
T Consensus 227 ~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 227 QPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp --TTS-EEEEEEETTTTEEEEEET
T ss_pred cccCCeeEeEeEeCCCCEEEEEeC
Confidence 124789999999999998875
No 336
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.24 E-value=0.0011 Score=38.64 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=30.6
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc
Q 021399 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE 43 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~ 43 (313)
+.-...|.+++|+|+.++||.+..||.|.++.+ +++
T Consensus 8 k~l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 8 KNLPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred cCCCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 444557999999999999999999999999988 443
No 337
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.18 E-value=0.011 Score=55.81 Aligned_cols=92 Identities=16% Similarity=0.150 Sum_probs=62.6
Q ss_pred EEEeeCCCeEEEEECCCCc--eeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE-e-cCCcee
Q 021399 161 IISAGEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-V-TERPVN 236 (313)
Q Consensus 161 i~t~~~d~~i~lwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~-~~~~~~ 236 (313)
.+.|-.+..|..||++-.. ++......-.......|++-+.+| +||.|+.+|.||+||- .+...++. . ...+|.
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~ 622 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPII 622 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCee
Confidence 3456677888999987532 222111111234567888888777 5999999999999994 34333332 2 256899
Q ss_pred EEEeccCCCEEEEccccc
Q 021399 237 AVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 237 ~~~~~p~~~~~~~~~~~~ 254 (313)
.+..+.+|..+++++...
T Consensus 623 ~iDvt~DGkwilaTc~ty 640 (794)
T PF08553_consen 623 GIDVTADGKWILATCKTY 640 (794)
T ss_pred EEEecCCCcEEEEeecce
Confidence 999999999999887544
No 338
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.12 E-value=0.11 Score=42.50 Aligned_cols=202 Identities=13% Similarity=0.142 Sum_probs=99.7
Q ss_pred cccccccceeEEEEccCCCEEEEee-CCCCeEEEeCCCCcEEEEecCC-CCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTYRGH-NGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s-~d~~i~iw~~~~~~~~~~~~~H-~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
.|.+=.+.+..++|+|+.+.|++.. ..+.|...+. +|+.+..+.-. -+..-.+++.-++.++++--+++.+.+.++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 4556666799999999877666554 4566655664 57776665432 2456778887777776665568888887764
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
..... .....+ ..+... ....++..+-.++|.|.++.++
T Consensus 95 ~~~~~------~~~~~~-------------------------~~~~l~----------~~~~~N~G~EGla~D~~~~~L~ 133 (248)
T PF06977_consen 95 DDTTS------LDRADV-------------------------QKISLG----------FPNKGNKGFEGLAYDPKTNRLF 133 (248)
T ss_dssp ---TT--------EEEE-------------------------EEEE-------------S---SS--EEEEEETTTTEEE
T ss_pred ccccc------cchhhc-------------------------eEEecc----------cccCCCcceEEEEEcCCCCEEE
Confidence 32100 000000 000000 0001223355677888777777
Q ss_pred EeeCCCeEEEEECCC---Cceeee-----cccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCCCcEEEEEecC-
Q 021399 163 SAGEDAIVRIWDTET---GKLLKE-----SDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDARTLELIKTYVTE- 232 (313)
Q Consensus 163 t~~~d~~i~lwd~~~---~~~~~~-----~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~- 232 (313)
.+-+..-.+|+.+.. ...+.. .......-..+.+++++|... .++....+..|..+| .+++++..+.-.
T Consensus 134 v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~ 212 (248)
T PF06977_consen 134 VAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDR 212 (248)
T ss_dssp EEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-ST
T ss_pred EEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCC
Confidence 776665555665432 111110 000111334578888888755 455555677788888 567776665422
Q ss_pred ---------CceeEEEeccCCCEEEE
Q 021399 233 ---------RPVNAVTMSPLLDHVVL 249 (313)
Q Consensus 233 ---------~~~~~~~~~p~~~~~~~ 249 (313)
.+...++|.++|...++
T Consensus 213 g~~gl~~~~~QpEGIa~d~~G~LYIv 238 (248)
T PF06977_consen 213 GFHGLSKDIPQPEGIAFDPDGNLYIV 238 (248)
T ss_dssp TGGG-SS---SEEEEEE-TT--EEEE
T ss_pred cccCcccccCCccEEEECCCCCEEEE
Confidence 25788999998865444
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.11 E-value=0.0067 Score=55.06 Aligned_cols=123 Identities=13% Similarity=0.130 Sum_probs=86.8
Q ss_pred cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE-EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (313)
Q Consensus 9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~-~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~ 87 (313)
|...|.--+++..+++|+-|+.-|.+.+|+-..+.. +....+-.+.+..+.++++..++|.|+..|.|-++-+..+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p- 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP- 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC-
Confidence 444566677888999999999999999998777764 334455566677788898888888888888888876654211
Q ss_pred EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (313)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d 167 (313)
.+.+.+.. ..+.|..+|+.+.|++++..+.+|...
T Consensus 111 ----------------~~~~~~t~-----------------------------~d~~~~~rVTal~Ws~~~~k~ysGD~~ 145 (726)
T KOG3621|consen 111 ----------------RDLDYVTP-----------------------------CDKSHKCRVTALEWSKNGMKLYSGDSQ 145 (726)
T ss_pred ----------------Ccceeecc-----------------------------ccccCCceEEEEEecccccEEeecCCC
Confidence 01111100 001256678888899888888888888
Q ss_pred CeEEEEECCC
Q 021399 168 AIVRIWDTET 177 (313)
Q Consensus 168 ~~i~lwd~~~ 177 (313)
|+|.+-.+.+
T Consensus 146 Gkv~~~~L~s 155 (726)
T KOG3621|consen 146 GKVVLTELDS 155 (726)
T ss_pred ceEEEEEech
Confidence 8887776655
No 340
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.10 E-value=0.21 Score=45.49 Aligned_cols=71 Identities=18% Similarity=0.164 Sum_probs=50.6
Q ss_pred CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCC------ceE--EEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCC
Q 021399 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNG------AVW--CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD 93 (313)
Q Consensus 22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~------~V~--~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~ 93 (313)
+..++.++.++.+.-.|.++++.+.+++-... .+. .+++. ++..++.++.|+.|.-+|.++++.++.....
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~ 139 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN 139 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence 45677788889999999999998877754332 111 11111 2256777888999999999999999887654
No 341
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.09 E-value=0.16 Score=43.91 Aligned_cols=232 Identities=16% Similarity=0.136 Sum_probs=89.9
Q ss_pred EEEEccCCCEEEE-eeCCCCeEEE--eCCCCcEEEEecCCCC-ceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 15 YLKYNKDGDLLFS-CAKDHTPTVW--FADNGERLGTYRGHNG-AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 15 ~~~fs~~g~~l~s-~s~d~~i~iw--~~~~~~~~~~~~~H~~-~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
.=+|.+||++|+- +..|+.-.+| |+++++.. +|..+.+ ......++|+++.++=......++--|+.+.+....+
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~-QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEIT-QLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEE-E---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEE-ECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 3478999965544 4456665555 77777543 4443332 2234556677776543444567777899888776665
Q ss_pred cCCCCee-EEEee--cCCeEEEEEC-CCc-e-ecccccee---------eeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399 91 NFDSPAR-SVDFA--VGDKLAVITT-DPF-M-ELNSAIHV---------KRIARDPADQGGESVLILKGPQGRINRAVWG 155 (313)
Q Consensus 91 ~~~~~~~-~~~~~--~~~~~~~~~~-~~~-~-~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (313)
.....-. +..+. .+...++... ... . .+...... ..+..- ....++....+. -...+.-+.++
T Consensus 119 ~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i-dl~tG~~~~v~~-~~~wlgH~~fs 196 (386)
T PF14583_consen 119 EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI-DLKTGERKVVFE-DTDWLGHVQFS 196 (386)
T ss_dssp E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE-ETTT--EEEEEE-ESS-EEEEEEE
T ss_pred ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE-ECCCCceeEEEe-cCccccCcccC
Confidence 5443322 23332 2333333221 000 0 00000000 000000 001122222222 12344567788
Q ss_pred cCCCEEE-Eee---CCCe-EEEEECC-CCceeeecccccCceeceEEEEECCCCCEEEEee-----CCCcEEEEECCCCc
Q 021399 156 PLNRTII-SAG---EDAI-VRIWDTE-TGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-----LDKSAKLWDARTLE 224 (313)
Q Consensus 156 ~~~~~i~-t~~---~d~~-i~lwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-----~dg~i~iwd~~~~~ 224 (313)
|....++ -|- .+.. -|+|-++ .+...+.+.... ....+.-=.|.+||+.|.--+ .+..|.-+|+++++
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 7665443 443 2221 3566543 233333333222 234455567999999765432 24456777888876
Q ss_pred EEEEEecCCceeEEEeccCCCEEEEccc
Q 021399 225 LIKTYVTERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 225 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 252 (313)
.......+.. .-.--++++. ++++-|
T Consensus 276 ~~~~~~~p~~-~H~~ss~Dg~-L~vGDG 301 (386)
T PF14583_consen 276 RRRLMEMPWC-SHFMSSPDGK-LFVGDG 301 (386)
T ss_dssp EEEEEEE-SE-EEEEE-TTSS-EEEEEE
T ss_pred ceEEEeCCce-eeeEEcCCCC-EEEecC
Confidence 5432223321 1222355555 344433
No 342
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.014 Score=51.55 Aligned_cols=146 Identities=20% Similarity=0.290 Sum_probs=85.2
Q ss_pred eEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCC-ceeccccceeeeee-eCCCCCCCceEEEec
Q 021399 66 TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDP-FMELNSAIHVKRIA-RDPADQGGESVLILK 143 (313)
Q Consensus 66 ~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 143 (313)
+|.++..-..++--|++.|+.+....+...+.-+++.|+.+..-..... +..++. ..+. .++...+...+...+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~----n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSD----NSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecC----CceEEecccccCcceeeeee
Confidence 5566666677777899999998888777666666676654443222111 111111 1111 122222222333334
Q ss_pred CCCC----ceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEE
Q 021399 144 GPQG----RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (313)
Q Consensus 144 ~~~~----~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd 219 (313)
+|+- ...+.+-. ...+|+.||.+|.|||||. .+...++. .++-...|..+..+.+|++|+..+ +..+.+.|
T Consensus 424 ~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTA--lPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~ 498 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTA--LPGLGDAIKHVDVTADGKWILATC-KTYLLLID 498 (644)
T ss_pred ccccccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhc--ccccCCceeeEEeeccCcEEEEec-ccEEEEEE
Confidence 4431 12222222 3457999999999999997 33333332 246778999999999999887665 45566665
Q ss_pred C
Q 021399 220 A 220 (313)
Q Consensus 220 ~ 220 (313)
+
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 4
No 343
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.03 E-value=0.16 Score=43.02 Aligned_cols=254 Identities=15% Similarity=0.119 Sum_probs=128.2
Q ss_pred CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee----------CCCcEEEEECCCCeEEEEecCCC-------
Q 021399 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNVETGAQLFTFNFDS------- 94 (313)
Q Consensus 32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s----------~D~~v~vWd~~~~~~~~~~~~~~------- 94 (313)
+++.|.|.++++.+..+.+- ..-.+.++|+++.+++++ +.-.|.+||..+-+....+....
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 47899999999998888642 222356789999887743 44569999999877665443322
Q ss_pred -CeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEE
Q 021399 95 -PARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI 172 (313)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~l 172 (313)
......++++++.+.+.+ .+... +.+-++. ..+.+..+.-+ .+..+.-.+ .+.|.+-+.||.+.-
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~S----VtVVDl~------~~kvv~ei~~P--GC~~iyP~~-~~~F~~lC~DGsl~~ 161 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATS----VTVVDLA------AKKVVGEIDTP--GCWLIYPSG-NRGFSMLCGDGSLLT 161 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEE----EEEEETT------TTEEEEEEEGT--SEEEEEEEE-TTEEEEEETTSCEEE
T ss_pred ccccceEEccCCcEEEEEccCCCCe----EEEEECC------CCceeeeecCC--CEEEEEecC-CCceEEEecCCceEE
Confidence 122334555555554421 11111 1111110 11111111110 111111112 245777788898888
Q ss_pred EECC-CCceeeeccc--ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE--EEEecC-----------Ccee
Q 021399 173 WDTE-TGKLLKESDK--ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI--KTYVTE-----------RPVN 236 (313)
Q Consensus 173 wd~~-~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~-----------~~~~ 236 (313)
..+. .|+..++... ..........-++...+..++=-+.+|.|+--|+...... ..+..- .-..
T Consensus 162 v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q 241 (342)
T PF06433_consen 162 VTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQ 241 (342)
T ss_dssp EEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS
T ss_pred EEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCccee
Confidence 8775 4444322110 1111112223334445555555778888888887665432 222110 0122
Q ss_pred EEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
-+++++..+.+++.-- .+ .-+-+....-|++.+|..+.+++..+.. ..++.+|+.+.|.|=+-|
T Consensus 242 ~~A~~~~~~rlyvLMh-~g---~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~ 305 (342)
T PF06433_consen 242 LIAYHAASGRLYVLMH-QG---GEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLY 305 (342)
T ss_dssp -EEEETTTTEEEEEEE-E-----TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEE
T ss_pred eeeeccccCeEEEEec-CC---CCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEE
Confidence 3455554444443210 00 0123444556788899988888877652 457889999999875444
No 344
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.01 E-value=0.0079 Score=55.93 Aligned_cols=113 Identities=12% Similarity=0.169 Sum_probs=79.7
Q ss_pred ccceeEEEEccCCCEEEEee----CCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399 10 ERPLTYLKYNKDGDLLFSCA----KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s----~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~ 85 (313)
.+..+-.+|+|.-++++.++ ..|.|.|+ .++|++..... ..-.+++++|+|..-.|++|-.-|.+.+|...+.+
T Consensus 15 davsti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred cccccccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCce
Confidence 33445678999999999886 36888888 46666422111 11124679999988788888888889999865433
Q ss_pred EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee
Q 021399 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (313)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~ 165 (313)
.- .....|..+|..+.|+++|..++|+.
T Consensus 93 ~h----------------------------------------------------tv~~th~a~i~~l~wS~~G~~l~t~d 120 (1416)
T KOG3617|consen 93 TH----------------------------------------------------TVVETHPAPIQGLDWSHDGTVLMTLD 120 (1416)
T ss_pred ee----------------------------------------------------eeccCCCCCceeEEecCCCCeEEEcC
Confidence 21 11134667788888999999999999
Q ss_pred CCCeEEEEECC
Q 021399 166 EDAIVRIWDTE 176 (313)
Q Consensus 166 ~d~~i~lwd~~ 176 (313)
.=|.+.+|...
T Consensus 121 ~~g~v~lwr~d 131 (1416)
T KOG3617|consen 121 NPGSVHLWRYD 131 (1416)
T ss_pred CCceeEEEEee
Confidence 99999999754
No 345
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.97 E-value=0.00075 Score=60.38 Aligned_cols=208 Identities=15% Similarity=0.145 Sum_probs=116.0
Q ss_pred CCceEEEEECCCCC--eEEEeeCCCcEEEEECCCCe---EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeee
Q 021399 52 NGAVWCCDVSRDSM--TLITGSADQTAKLWNVETGA---QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKR 126 (313)
Q Consensus 52 ~~~V~~~~~~~~~~--~l~s~s~D~~v~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (313)
...+.|+++..+.+ .++.|..+|.|-+-..+... -..+..+..+..+++|.+.+.-.++..-...........|+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34577787765543 67778889999887765322 11222234455566666543222221111111222233343
Q ss_pred eeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC-CCCE
Q 021399 127 IARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSH 205 (313)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~ 205 (313)
+...-..+.......- +.....++++|-.+.+.+++|.....++++|++.... +... -....+..+..+| .+++
T Consensus 136 i~s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~s---vnTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSS---VNTKYVQGITVDPFSPNY 210 (783)
T ss_pred cccccCCCcccccccc-ccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhh---hhhhhcccceecCCCCCc
Confidence 3321111111111111 1223345788887778888888888999999874321 1111 1234566677777 6777
Q ss_pred EEEeeCCCcEEEEE-CCC-CcEEEEEecC-----CceeEEEeccCCCEEEEcccccCceeEeeccCC
Q 021399 206 FLTGSLDKSAKLWD-ART-LELIKTYVTE-----RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA 265 (313)
Q Consensus 206 l~s~s~dg~i~iwd-~~~-~~~~~~~~~~-----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 265 (313)
+++.+ ||.|-+|| .+. ..++..+.+. ..+..++|.|....+++...-+...++.+|.+.
T Consensus 211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 76666 99999999 332 2334443322 248899999998777777666777777777543
No 346
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.94 E-value=0.23 Score=43.17 Aligned_cols=261 Identities=15% Similarity=0.124 Sum_probs=119.7
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE-EecCCCC-----------------ceEEEEECCCCCeEEEee
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNG-----------------AVWCCDVSRDSMTLITGS 71 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~-~~~~H~~-----------------~V~~~~~~~~~~~l~s~s 71 (313)
...+....|||+|+.++-.. ++.|.+++..++.... +..| .. .-.++.||||++.|+...
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-ceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 45678899999999999876 5789999887774332 2222 11 114577999999887765
Q ss_pred C-CCcEEEEECC---CC-e---EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe-
Q 021399 72 A-DQTAKLWNVE---TG-A---QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL- 142 (313)
Q Consensus 72 ~-D~~v~vWd~~---~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 142 (313)
. +..|+.+.+. .. . ....+... .+|+....+ .+.+.++... ....+...
T Consensus 120 ~d~~~v~~~~~~~~~~~~~~yp~~~~~~YP--------k~G~~np~v----------~l~v~~~~~~----~~~~~~~~~ 177 (353)
T PF00930_consen 120 FDEREVPEYPLPDYSPPDSQYPEVESIRYP--------KAGDPNPRV----------SLFVVDLASG----KTTELDPPN 177 (353)
T ss_dssp EE-TTS-EEEEEEESSSTESS-EEEEEE----------BTTS---EE----------EEEEEESSST----CCCEE---H
T ss_pred ECCcCCceEEeeccCCccccCCcccccccC--------CCCCcCCce----------EEEEEECCCC----cEEEeeecc
Confidence 3 3444444321 11 0 11111110 012211000 0000111000 00011111
Q ss_pred --cCCCCceEEEEEccCCCEEEEe--eC---CCeEEEEECCCCceeeecc-cccCceeceEEEEEC-CCCCE-EEEeeCC
Q 021399 143 --KGPQGRINRAVWGPLNRTIISA--GE---DAIVRIWDTETGKLLKESD-KETGHKKTITSLAKA-ADGSH-FLTGSLD 212 (313)
Q Consensus 143 --~~~~~~i~~~~~~~~~~~i~t~--~~---d~~i~lwd~~~~~~~~~~~-~~~~h~~~v~~~~~s-~~~~~-l~s~s~d 212 (313)
......+..+.|.+++..++.. .. ...+.++|..++..-.... ...+.-..-....+. +++.. +.....|
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 1123356788899988844443 22 2346778887654321111 111111111233343 55554 4444567
Q ss_pred CcE--EEEECCCCcEEEEEe-cCCce-eEEEeccCCCEEEEcccccC---ceeEeeccCCCceeeeeeehhhhhhhcccc
Q 021399 213 KSA--KLWDARTLELIKTYV-TERPV-NAVTMSPLLDHVVLGGGQDA---SAVTTTDHRAGKFEAKFFDKILQEEIGGVK 285 (313)
Q Consensus 213 g~i--~iwd~~~~~~~~~~~-~~~~~-~~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (313)
|.- .+.+...+.. +.+. ..-.+ ..+.+++.++.++..+..+. ..++..+.. .+..+..+.
T Consensus 258 G~~hly~~~~~~~~~-~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~------------~~~~~~~LT 324 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKP-RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD------------SGGEPKCLT 324 (353)
T ss_dssp SSEEEEEEETTSSEE-EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT------------ETTEEEESS
T ss_pred CCcEEEEEcccccce-eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC------------CCCCeEecc
Confidence 754 4456665554 3433 33345 34778888887766544321 223222222 011112222
Q ss_pred ccccceeEEEECCCCCeeEEEE
Q 021399 286 GHFGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 286 ~h~~~V~~~~fspdgk~~~~~~ 307 (313)
...+.-..++|||||+++..-.
T Consensus 325 ~~~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 325 CEDGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp TTSSTTEEEEE-TTSSEEEEEE
T ss_pred CCCCCceEEEECCCCCEEEEEE
Confidence 2222227999999999987543
No 347
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=96.93 E-value=0.25 Score=43.51 Aligned_cols=242 Identities=11% Similarity=0.078 Sum_probs=120.2
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEE-------------------------------------------EEe
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-------------------------------------------GTY 48 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~-------------------------------------------~~~ 48 (313)
.|..+.|+++..-|+.|-..|.|-||.....+.. .-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5788999999888888999999999854322110 012
Q ss_pred cCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCC---------CeeEEEeec-----CC---eEEEEE
Q 021399 49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS---------PARSVDFAV-----GD---KLAVIT 111 (313)
Q Consensus 49 ~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~---------~~~~~~~~~-----~~---~~~~~~ 111 (313)
....++|++++.|.-| +++.|..+|.+.|-|++....++...... .+..+.|.. +. ..+++.
T Consensus 83 ~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 3446789999998555 78888999999999999888887643222 344555542 11 122222
Q ss_pred CCCceeccccceeeeeeeCC-CCCCCceEEEecCCCCceEEEE-EccC---------------------CCEEEEeeCCC
Q 021399 112 TDPFMELNSAIHVKRIARDP-ADQGGESVLILKGPQGRINRAV-WGPL---------------------NRTIISAGEDA 168 (313)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~-~~~~---------------------~~~i~t~~~d~ 168 (313)
++. +......+.... .............+.+++..+. ++.+ ..+++.++ +.
T Consensus 162 Tn~-----G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~ 235 (395)
T PF08596_consen 162 TNS-----GNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ES 235 (395)
T ss_dssp ETT-----SEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SS
T ss_pred eCC-----CCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-cc
Confidence 221 001111111000 0000000111112223332222 1111 01344444 67
Q ss_pred eEEEEECCCCceeeecccccCceeceEEEEE-----CCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC-----ceeEE
Q 021399 169 IVRIWDTETGKLLKESDKETGHKKTITSLAK-----AADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-----PVNAV 238 (313)
Q Consensus 169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~-----s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~~~~~ 238 (313)
.+|++...+.+...+... .......+.+ ...+..|++-..+|.|+++.+-..+.+....... .....
T Consensus 236 ~irv~~~~~~k~~~K~~~---~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~s 312 (395)
T PF08596_consen 236 DIRVFKPPKSKGAHKSFD---DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSS 312 (395)
T ss_dssp EEEEE-TT---EEEEE-S---S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-
T ss_pred ceEEEeCCCCcccceeec---cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCcccccccccc
Confidence 799999877665443321 1112222233 2356678888999999999999988887775432 24567
Q ss_pred EeccCCCEEEEcccccCceeEeecc
Q 021399 239 TMSPLLDHVVLGGGQDASAVTTTDH 263 (313)
Q Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (313)
++.++|+.++..+..+...+.++..
T Consensus 313 sis~~Gdi~~~~gpsE~~l~sv~~~ 337 (395)
T PF08596_consen 313 SISRNGDIFYWTGPSEIQLFSVWGE 337 (395)
T ss_dssp EE-TTS-EEEE-SSSEEEEEEEES-
T ss_pred EECCCCCEEEEeCcccEEEEEEEcc
Confidence 7789999877776555544544443
No 348
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.89 E-value=0.055 Score=51.30 Aligned_cols=137 Identities=15% Similarity=0.140 Sum_probs=82.2
Q ss_pred CCCCeEEEeCCCCcEEEEecCCCCc-eEEEEECCC-------CCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEe
Q 021399 30 KDHTPTVWFADNGERLGTYRGHNGA-VWCCDVSRD-------SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF 101 (313)
Q Consensus 30 ~d~~i~iw~~~~~~~~~~~~~H~~~-V~~~~~~~~-------~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~ 101 (313)
....++-.|++.|+.+...+.|... |..+ .|+ ++..+.|-.+..+..||++-........ . ...+
T Consensus 502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~-~----~k~Y 574 (794)
T PF08553_consen 502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS-Q----SKQY 574 (794)
T ss_pred CCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeec-c----cccc
Confidence 3466777788899988888887654 5443 332 2334556777788888876421000000 0 0000
Q ss_pred ecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCcee
Q 021399 102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 181 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~ 181 (313)
.......+++-..+ .+||+|+.+|.|||||.. ++..
T Consensus 575 ------------------------------------------~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~-g~~A 610 (794)
T PF08553_consen 575 ------------------------------------------SSKNNFSCFATTED-GYIAVGSNKGDIRLYDRL-GKRA 610 (794)
T ss_pred ------------------------------------------ccCCCceEEEecCC-ceEEEEeCCCcEEeeccc-chhh
Confidence 00112223333333 469999999999999943 3322
Q ss_pred eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399 182 KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (313)
Q Consensus 182 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~ 220 (313)
++ ...+-..+|..+..+.||++|++.+. ..+.+++.
T Consensus 611 KT--~lp~lG~pI~~iDvt~DGkwilaTc~-tyLlLi~t 646 (794)
T PF08553_consen 611 KT--ALPGLGDPIIGIDVTADGKWILATCK-TYLLLIDT 646 (794)
T ss_pred hh--cCCCCCCCeeEEEecCCCcEEEEeec-ceEEEEEE
Confidence 22 22356789999999999999887764 45667764
No 349
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.84 E-value=0.32 Score=43.32 Aligned_cols=229 Identities=11% Similarity=0.021 Sum_probs=103.1
Q ss_pred eeEEEEccCCCEEEEe-eCCCC----eEEEeCCCCcEEE-EecCCCCceEEEEECCCCCeEEEeeCCC-----------c
Q 021399 13 LTYLKYNKDGDLLFSC-AKDHT----PTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSADQ-----------T 75 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~-s~d~~----i~iw~~~~~~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~-----------~ 75 (313)
+...++||||++++-+ +.+|. +++.|+++++.+. .+..-. -..+.|.++++.|+-...|. .
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE--SEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc--cceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 3467899999988854 44444 9999999997654 223211 12389999988665444332 3
Q ss_pred EEEEECCCCeE--EEEecCC--CC-eeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceE
Q 021399 76 AKLWNVETGAQ--LFTFNFD--SP-ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN 150 (313)
Q Consensus 76 v~vWd~~~~~~--~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (313)
|+.|.+.+... ...+.-. .- ...+..+.+++.+++....... .....+.+..... ............-.+...
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~-~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGG-SPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTT-TSS-SEEEEEESSSS-EE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccC-CCcCCcEEEeCCCCceEE
Confidence 78888876532 2333321 22 3355566666655543221110 0111111111100 011122222222222222
Q ss_pred EEEEccCCCEEEEee---CCCeEEEEECCCCce--eeecccccCcee--ceEEEEECCCCCEEEE-eeCCC--cEEEEEC
Q 021399 151 RAVWGPLNRTIISAG---EDAIVRIWDTETGKL--LKESDKETGHKK--TITSLAKAADGSHFLT-GSLDK--SAKLWDA 220 (313)
Q Consensus 151 ~~~~~~~~~~i~t~~---~d~~i~lwd~~~~~~--~~~~~~~~~h~~--~v~~~~~s~~~~~l~s-~s~dg--~i~iwd~ 220 (313)
.+... .+.+++... ..+.|...++.+... ..... ..+.. .+..+.. .+++|+. ...++ .|+++|+
T Consensus 282 ~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l--~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~ 356 (414)
T PF02897_consen 282 YVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVL--IPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDL 356 (414)
T ss_dssp EEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEE--E--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEET
T ss_pred EEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEE--cCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEEC
Confidence 23222 333333332 235666667665542 11111 12333 3444443 3444444 44444 4788999
Q ss_pred CCCcEEEEEecC--CceeEEEeccCCCEEEEc
Q 021399 221 RTLELIKTYVTE--RPVNAVTMSPLLDHVVLG 250 (313)
Q Consensus 221 ~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~ 250 (313)
..+.....+... ..+..+...+..+.+.+.
T Consensus 357 ~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~ 388 (414)
T PF02897_consen 357 DDGKESREIPLPEAGSVSGVSGDFDSDELRFS 388 (414)
T ss_dssp T-TEEEEEEESSSSSEEEEEES-TT-SEEEEE
T ss_pred CCCcEEeeecCCcceEEeccCCCCCCCEEEEE
Confidence 834444444332 223444445555555544
No 350
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.83 E-value=0.07 Score=47.61 Aligned_cols=133 Identities=16% Similarity=0.145 Sum_probs=69.7
Q ss_pred CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEE
Q 021399 93 DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRI 172 (313)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~l 172 (313)
...+..+.++|.+.++++..+....+.......+.. .+.....+|.+ .+.+|+-.....|.+
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----------------~G~g~~~vw~~-~n~yAv~~~~~~I~I 93 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----------------FGSGLSFVWSS-RNRYAVLESSSTIKI 93 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----------------EEE-SEEEE-T-SSEEEEE-TTS-EEE
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----------------cCceeEEEEec-CccEEEEECCCeEEE
Confidence 344667788887777776555444332211111110 13345678888 455788887889999
Q ss_pred EECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEccc
Q 021399 173 WDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 173 wd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 252 (313)
+.-.+....+.+.. ...+..+.. |..|...+. +.|.+||..+++.++.+... ++..+.|+++++.+++.+.
T Consensus 94 ~kn~~~~~~k~i~~----~~~~~~If~---G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 94 YKNFKNEVVKSIKL----PFSVEKIFG---GNLLGVKSS-DFICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp EETTEE-TT---------SS-EEEEE----SSSEEEEET-TEEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S
T ss_pred EEcCccccceEEcC----CcccceEEc---CcEEEEECC-CCEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeC
Confidence 74222221112211 112344432 776666654 48999999999999998654 3899999999999888753
No 351
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.59 E-value=0.36 Score=44.93 Aligned_cols=189 Identities=11% Similarity=0.132 Sum_probs=93.7
Q ss_pred cceeEEEEccCCCEEEEee------CCCCeEEEeCCCCcEEEE-ecCCCCceEEEEECCCCCeEEEeeCC-CcEEEE---
Q 021399 11 RPLTYLKYNKDGDLLFSCA------KDHTPTVWFADNGERLGT-YRGHNGAVWCCDVSRDSMTLITGSAD-QTAKLW--- 79 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s------~d~~i~iw~~~~~~~~~~-~~~H~~~V~~~~~~~~~~~l~s~s~D-~~v~vW--- 79 (313)
..+...++||||+.++... .|..-.||-...+..... ..+. ....-.|+|+|+.+++.+.. ..+++.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEeccC
Confidence 3567889999999888766 355556664432222222 2332 37788999998877666432 222222
Q ss_pred --------ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCC-C-CceEEEecCCCCce
Q 021399 80 --------NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-G-GESVLILKGPQGRI 149 (313)
Q Consensus 80 --------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~i 149 (313)
+++.++... .....+..+.|+++++.++..... .+.+-.+.+..... . ........+-...+
T Consensus 428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~g------~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIGG------KVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEECC------EEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 333332222 334568888999877655543321 22222222211110 0 00111112222335
Q ss_pred EEEEEccCCCEEEEeeCCCeEEEEECCC-CceeeecccccCceeceEEEEECCCCCEEEEeeCCC
Q 021399 150 NRAVWGPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK 213 (313)
Q Consensus 150 ~~~~~~~~~~~i~t~~~d~~i~lwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg 213 (313)
.++.|..++.. +++..++.-.+|.+.- +... ...........+.+++-+++ .++....++
T Consensus 500 ~~l~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~-~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g 560 (591)
T PRK13616 500 VSLDWRTGDSL-VVGRSDPEHPVWYVNLDGSNS-DALPSRNLSAPVVAVAASPS--TVYVTDARA 560 (591)
T ss_pred ccceEecCCEE-EEEecCCCCceEEEecCCccc-cccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence 67889988874 4555555445555422 2211 11011112445666666542 344444454
No 352
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.57 Score=41.23 Aligned_cols=219 Identities=17% Similarity=0.139 Sum_probs=129.3
Q ss_pred eEEEEccCCC-EEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeC---CCcEEEEECCCCeEEEE
Q 021399 14 TYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA---DQTAKLWNVETGAQLFT 89 (313)
Q Consensus 14 ~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~---D~~v~vWd~~~~~~~~~ 89 (313)
..+.+++.++ ..+....+..|.+.|.++.+..+...--. .-..++++++++.+..+.. ++++-+-|..+.+.+..
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 4677888887 44445556899999988777665543211 4456889999876655544 68888888888887776
Q ss_pred ecCCCCeeEEEeecCCeEEEEEC--CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee-C
Q 021399 90 FNFDSPARSVDFAVGDKLAVITT--DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-E 166 (313)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~-~ 166 (313)
.........+.+.+++..+.... +....... .....+.+ .. ....+ .....-..+.+.|++.++.... .
T Consensus 156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~-~~~~~v~~-~~--~~~~~----~~~~~P~~i~v~~~g~~~yV~~~~ 227 (381)
T COG3391 156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVID-TSGNSVVR-GS--VGSLV----GVGTGPAGIAVDPDGNRVYVANDG 227 (381)
T ss_pred EecCCCcceEEECCCCCeEEEEecCCCeEEEEe-CCCcceec-cc--ccccc----ccCCCCceEEECCCCCEEEEEecc
Confidence 54443336677777666444433 11111100 00000000 00 00000 0111224577888888554433 3
Q ss_pred C--CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC-CCcEEEEECCCCcEEEEEecCC----ceeEEE
Q 021399 167 D--AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIKTYVTER----PVNAVT 239 (313)
Q Consensus 167 d--~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~----~~~~~~ 239 (313)
+ +.+...|..++........ .+-. ....++..|+|+.+..... .+.+.+-|..+......+.... ....++
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~-~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~ 305 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLP-VGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIA 305 (381)
T ss_pred CCCceEEEEeCCCceEEEeccc-cccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecc
Confidence 2 5899999888776554221 1122 5667889999999888754 4889999999888776654322 244455
Q ss_pred eccC
Q 021399 240 MSPL 243 (313)
Q Consensus 240 ~~p~ 243 (313)
+.+.
T Consensus 306 ~~~~ 309 (381)
T COG3391 306 ISPL 309 (381)
T ss_pred ceee
Confidence 5443
No 353
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.33 E-value=0.04 Score=51.08 Aligned_cols=109 Identities=17% Similarity=0.126 Sum_probs=62.0
Q ss_pred eceEEEEECCCCCEEEEee------CCCcEEEE--ECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399 192 KTITSLAKAADGSHFLTGS------LDKSAKLW--DARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH 263 (313)
Q Consensus 192 ~~v~~~~~s~~~~~l~s~s------~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (313)
..+.+.+.+|+|+.++..- .|+.-.|| +.. +.. +.+........-.|+|+++.+.+....+. ...+.+.
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~-~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNT-VVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCCceEEEecCcc-eEEEecc
Confidence 4678889999999887665 24443444 542 222 44433334677889999887766532111 1112211
Q ss_pred CCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399 264 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~ 307 (313)
.+..++...+...+.... ...+.|.+++|||||+++||+.
T Consensus 427 -~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 427 -PATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred -CCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE
Confidence 111222222332222211 2356799999999999999975
No 354
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.27 E-value=0.038 Score=50.41 Aligned_cols=120 Identities=16% Similarity=0.151 Sum_probs=80.6
Q ss_pred CCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCC
Q 021399 52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDP 131 (313)
Q Consensus 52 ~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (313)
...|.--+++..+++++-|++-|.+.+++-..++... ...
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~--------------------------------------- 72 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKN--------------------------------------- 72 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhc-ccc---------------------------------------
Confidence 3344334455667899999999999999865543211 000
Q ss_pred CCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeee--c-ccccCceeceEEEEECCCCCEEEE
Q 021399 132 ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKE--S-DKETGHKKTITSLAKAADGSHFLT 208 (313)
Q Consensus 132 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~--~-~~~~~h~~~v~~~~~s~~~~~l~s 208 (313)
.+..+.+.....++.+.++|.|+..|.|.++-++...+-.. + .....|...|++++|++|+..+.+
T Consensus 73 -----------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ys 141 (726)
T KOG3621|consen 73 -----------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYS 141 (726)
T ss_pred -----------cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEee
Confidence 00122334455677778888899999998887665322110 1 111237889999999999999999
Q ss_pred eeCCCcEEEEECCC
Q 021399 209 GSLDKSAKLWDART 222 (313)
Q Consensus 209 ~s~dg~i~iwd~~~ 222 (313)
|..-|+|..-.+.+
T Consensus 142 GD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 142 GDSQGKVVLTELDS 155 (726)
T ss_pred cCCCceEEEEEech
Confidence 99999998877665
No 355
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.23 E-value=0.0053 Score=57.02 Aligned_cols=70 Identities=19% Similarity=0.163 Sum_probs=63.2
Q ss_pred eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
+.++||+|..-.|++|=.-|.+.+|...+.+.-.....|..+|..+.||++|..++|+..-|.+.+|...
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 4569999999999999999999999988877766677899999999999999999999999999999875
No 356
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.19 E-value=0.085 Score=43.51 Aligned_cols=105 Identities=24% Similarity=0.234 Sum_probs=57.1
Q ss_pred ceEEEEECCCCCEEEEee-CCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeee
Q 021399 193 TITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK 271 (313)
Q Consensus 193 ~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (313)
.+.+.+.+++++.++... .++.-.+|-.+.+...........+..-+|.+++....+..+.. ......+...+.....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~-~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSG-GVRVVRDSASGTGEPV 103 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCC-ceEEEEecCCCcceeE
Confidence 688899999999887766 22333444434444333333334566778888854433333222 2221111111111111
Q ss_pred eeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399 272 FFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 272 ~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~ 307 (313)
..+. ..-.+.|.++++||||+++|++.
T Consensus 104 ~v~~---------~~~~~~I~~l~vSpDG~RvA~v~ 130 (253)
T PF10647_consen 104 EVDW---------PGLRGRITALRVSPDGTRVAVVV 130 (253)
T ss_pred Eecc---------cccCCceEEEEECCCCcEEEEEE
Confidence 1111 11112899999999999999987
No 357
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.17 E-value=0.26 Score=34.49 Aligned_cols=83 Identities=17% Similarity=0.153 Sum_probs=54.0
Q ss_pred eeEEEEc---cCC-CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399 13 LTYLKYN---KDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (313)
Q Consensus 13 v~~~~fs---~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~ 88 (313)
|.++++. .|| +-|+.||.|..||+|+- .+.+.++..+ +.|.++.-... ..|+-+-.+|+|-+|+- .+..+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlW 75 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLW 75 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeC--cceee
Confidence 4555543 344 58888999999999963 4666677664 45666665544 56888899999998874 33444
Q ss_pred EecCCCCeeEEEe
Q 021399 89 TFNFDSPARSVDF 101 (313)
Q Consensus 89 ~~~~~~~~~~~~~ 101 (313)
.......+.++.+
T Consensus 76 RiKSK~~~~~~~~ 88 (111)
T PF14783_consen 76 RIKSKNQVTSMAF 88 (111)
T ss_pred eeccCCCeEEEEE
Confidence 4444333444443
No 358
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.17 E-value=0.02 Score=33.38 Aligned_cols=33 Identities=6% Similarity=0.121 Sum_probs=29.0
Q ss_pred eeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Q 021399 191 KKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (313)
Q Consensus 191 ~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~ 224 (313)
...|..++|+|..+.||.++.||.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 356889999999999999999999999998 444
No 359
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.02 Score=54.73 Aligned_cols=70 Identities=24% Similarity=0.447 Sum_probs=56.1
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEE---EECCCCCeEEEeeCCCcEEEEEC
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCC---DVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~---~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
..+|.+++|+.+|..++.|-.+|.|.+||...+..++.+..|..++.++ .+..++..++++..-|. +|.+
T Consensus 130 ~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 130 QGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 3479999999999999999999999999999999988888776665443 33344557888887776 6765
No 360
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.14 E-value=0.74 Score=39.41 Aligned_cols=194 Identities=14% Similarity=0.146 Sum_probs=99.9
Q ss_pred CeEEEeCCCCcEEEEecCCC-CceEEEE---ECCC----CCeEEEeeC----------CCcEEEEECCCC-----eE--E
Q 021399 33 TPTVWFADNGERLGTYRGHN-GAVWCCD---VSRD----SMTLITGSA----------DQTAKLWNVETG-----AQ--L 87 (313)
Q Consensus 33 ~i~iw~~~~~~~~~~~~~H~-~~V~~~~---~~~~----~~~l~s~s~----------D~~v~vWd~~~~-----~~--~ 87 (313)
.|++.|..+.+.+.++.-.. ..+.+++ +..+ .++++.|.. .|.+.++++.+. +. +
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 56778877777665554322 2334433 3322 346665542 288999999884 22 2
Q ss_pred EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (313)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d 167 (313)
.......++.++... ++.++++.... +.++++.... .-........+ ..+.++. ..+++|+.|..-
T Consensus 83 ~~~~~~g~V~ai~~~-~~~lv~~~g~~-------l~v~~l~~~~---~l~~~~~~~~~-~~i~sl~--~~~~~I~vgD~~ 148 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGRLVVAVGNK-------LYVYDLDNSK---TLLKKAFYDSP-FYITSLS--VFKNYILVGDAM 148 (321)
T ss_dssp EEEEESS-EEEEEEE-TTEEEEEETTE-------EEEEEEETTS---SEEEEEEE-BS-SSEEEEE--EETTEEEEEESS
T ss_pred EEEeecCcceEhhhh-CCEEEEeecCE-------EEEEEccCcc---cchhhheecce-EEEEEEe--ccccEEEEEEcc
Confidence 233456677766554 44455544332 2223322211 01111122211 2333333 335689999877
Q ss_pred CeEEEE--ECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC-----------CcEEEEEecCCc
Q 021399 168 AIVRIW--DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART-----------LELIKTYVTERP 234 (313)
Q Consensus 168 ~~i~lw--d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~-----------~~~~~~~~~~~~ 234 (313)
..+.++ +....+ +..+.. ......++++.+-++++.++.+..+|.+.++.... ...+..+.....
T Consensus 149 ~sv~~~~~~~~~~~-l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~ 226 (321)
T PF03178_consen 149 KSVSLLRYDEENNK-LILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDI 226 (321)
T ss_dssp SSEEEEEEETTTE--EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-
T ss_pred cCEEEEEEEccCCE-EEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCc
Confidence 777766 543322 222222 12355688888876667999999999999987552 123444555666
Q ss_pred eeEE---Eecc
Q 021399 235 VNAV---TMSP 242 (313)
Q Consensus 235 ~~~~---~~~p 242 (313)
++++ ++.|
T Consensus 227 v~~~~~~~l~~ 237 (321)
T PF03178_consen 227 VNSFRRGSLIP 237 (321)
T ss_dssp EEEEEE--SS-
T ss_pred cceEEEEEeee
Confidence 7776 5555
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=1 Score=39.68 Aligned_cols=229 Identities=12% Similarity=0.072 Sum_probs=128.2
Q ss_pred eeEEEEccCCCEEEEeeCC-CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 13 LTYLKYNKDGDLLFSCAKD-HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~d-~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
...+.+.+++..+.....- ..+..-+............-...-..+++++.++ .+++...++.|.+-|..+.......
T Consensus 33 ~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~ 112 (381)
T COG3391 33 PGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSI 112 (381)
T ss_pred CceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEe
Confidence 3456777888544444322 2344444331111111111001223567888776 5566666799999998777776666
Q ss_pred cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe-eCCCe
Q 021399 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAI 169 (313)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~-~~d~~ 169 (313)
........+.+.++.+.+.+..... .+.... .+. ...............+ ..+++.|+++.+..+ ..++.
T Consensus 113 ~vG~~P~~~~~~~~~~~vYV~n~~~--~~~~vs--vid----~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~ 183 (381)
T COG3391 113 PVGLGPVGLAVDPDGKYVYVANAGN--GNNTVS--VID----AATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNT 183 (381)
T ss_pred eeccCCceEEECCCCCEEEEEeccc--CCceEE--EEe----CCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCe
Confidence 6555666777777665554433211 000000 000 0111122222111123 678899999866555 47899
Q ss_pred EEEEECCCCceee-ecccccCceeceEEEEECCCCCEEEEeeCC---CcEEEEECCCCcEEEEE-ecCC-ceeEEEeccC
Q 021399 170 VRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTY-VTER-PVNAVTMSPL 243 (313)
Q Consensus 170 i~lwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~-~~~~-~~~~~~~~p~ 243 (313)
|.+.|.......+ .......-......++++++|+++...... +.+...|.+++...... .... ....+..+|.
T Consensus 184 v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~ 263 (381)
T COG3391 184 VSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPA 263 (381)
T ss_pred EEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCC
Confidence 9999977655442 100011223345677899999976655443 58999999988877652 2222 3566788899
Q ss_pred CCEEEEc
Q 021399 244 LDHVVLG 250 (313)
Q Consensus 244 ~~~~~~~ 250 (313)
+..+.+.
T Consensus 264 g~~~yv~ 270 (381)
T COG3391 264 GKAAYVA 270 (381)
T ss_pred CCEEEEE
Confidence 8887776
No 362
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.87 E-value=1.4 Score=40.29 Aligned_cols=68 Identities=19% Similarity=0.270 Sum_probs=46.8
Q ss_pred CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCc-----eE-EEEECCCCCeEEEee---------CCCcEEEEECCCCeEE
Q 021399 23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGA-----VW-CCDVSRDSMTLITGS---------ADQTAKLWNVETGAQL 87 (313)
Q Consensus 23 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~-----V~-~~~~~~~~~~l~s~s---------~D~~v~vWd~~~~~~~ 87 (313)
..++.++.|+.|.-+|.++|+.+..++..... +. +..+. + ..++.++ .++.+...|..+++.+
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 67777888999999999999998877643221 11 11222 2 3444443 3678899999999998
Q ss_pred EEecC
Q 021399 88 FTFNF 92 (313)
Q Consensus 88 ~~~~~ 92 (313)
+....
T Consensus 189 W~~~~ 193 (488)
T cd00216 189 WRFYT 193 (488)
T ss_pred eEeec
Confidence 87754
No 363
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.80 E-value=1 Score=38.23 Aligned_cols=225 Identities=12% Similarity=0.117 Sum_probs=115.2
Q ss_pred EEccCCC-EEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEE-ECCCCCeEEEeeCCCcEEEEECCCCeEEEEec-C-
Q 021399 17 KYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD-VSRDSMTLITGSADQTAKLWNVETGAQLFTFN-F- 92 (313)
Q Consensus 17 ~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~-~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~-~- 92 (313)
.|.++.. ++.+--..+.|.-|+..+++. ..+.... .+.++. ....+ .|+++. .-+.+++++++..+..+. .
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~-~~~~~~~~d~~g-~Lv~~~--~g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPG-GFSSGALIDAGG-RLIACE--HGVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCC-CcccceeecCCC-eEEEEc--cccEEEeccCCceeEEecccc
Confidence 4666665 455555667777777765643 2333322 233333 44444 444433 235567776555432221 1
Q ss_pred ----CCCeeEEEeecCCeEEEEECCC----ceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 93 ----DSPARSVDFAVGDKLAVITTDP----FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 93 ----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
....+...+.+++.+.+..... .........++++. ..+..+.....+-..-+.++|+|+++.+..+
T Consensus 106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~-----p~g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVD-----PDGGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEc-----CCCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 1122344444555554443220 00000001122211 1122333333333445789999999777666
Q ss_pred e-CCCeEEEEECCC--Cceeee--cccccCceeceEEEEECCCCCEEEEeeCCC-cEEEEECCCCcEEEEEecC-CceeE
Q 021399 165 G-EDAIVRIWDTET--GKLLKE--SDKETGHKKTITSLAKAADGSHFLTGSLDK-SAKLWDARTLELIKTYVTE-RPVNA 237 (313)
Q Consensus 165 ~-~d~~i~lwd~~~--~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~-~~~~~ 237 (313)
. ..+.|.-|+... +..-.. ........+..-.++...+|++-+++..+| .|..|+.+ ++++..+..+ ..+.+
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~ 259 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTN 259 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCcc
Confidence 4 447788887652 111000 001111234455566778888776555554 89999998 8988888765 45566
Q ss_pred EEe-ccCCCEEEEccc
Q 021399 238 VTM-SPLLDHVVLGGG 252 (313)
Q Consensus 238 ~~~-~p~~~~~~~~~~ 252 (313)
++| .|..+.+++++.
T Consensus 260 ~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 260 PAFGGPDLNTLYITSA 275 (307)
T ss_pred ceEeCCCcCEEEEEec
Confidence 665 555666666543
No 364
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.80 E-value=1.4 Score=41.83 Aligned_cols=174 Identities=12% Similarity=0.129 Sum_probs=97.0
Q ss_pred ccccccc-eeEEEEccCCCEEEEeeCCCC-----eEEEeCCCC------cEEE--EecCC-----CCceEEEEECCCCCe
Q 021399 6 MKGHERP-LTYLKYNKDGDLLFSCAKDHT-----PTVWFADNG------ERLG--TYRGH-----NGAVWCCDVSRDSMT 66 (313)
Q Consensus 6 l~~h~~~-v~~~~fs~~g~~l~s~s~d~~-----i~iw~~~~~------~~~~--~~~~H-----~~~V~~~~~~~~~~~ 66 (313)
++.+..+ |..+-...+-.+|++-+.|+. ++||+++.. .+++ .+-.| ..++.+++++.+-+.
T Consensus 60 fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~ 139 (933)
T KOG2114|consen 60 FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKT 139 (933)
T ss_pred heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccE
Confidence 3445555 444433333368888887755 899988743 1221 12222 345677888877667
Q ss_pred EEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCC
Q 021399 67 LITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 146 (313)
Q Consensus 67 l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (313)
+|.|=.+|.|..+. |... +++. ..........
T Consensus 140 Iv~Gf~nG~V~~~~---GDi~-----------------------------------------RDrg----sr~~~~~~~~ 171 (933)
T KOG2114|consen 140 IVCGFTNGLVICYK---GDIL-----------------------------------------RDRG----SRQDYSHRGK 171 (933)
T ss_pred EEEEecCcEEEEEc---Ccch-----------------------------------------hccc----cceeeeccCC
Confidence 77766777766542 1110 0000 0000111123
Q ss_pred CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE
Q 021399 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226 (313)
Q Consensus 147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 226 (313)
.+|+.+.+..++...+.+.....|.+|.+....+... ....|...+.|..+++....+++++. ..+.+||.....+-
T Consensus 172 ~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~--~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 172 EPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLK--VLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPC 248 (933)
T ss_pred CCceeeEEecCCceeEEEEecceeEEEEecCCCccee--eeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCccee
Confidence 4677777766655533333346688888874432221 22457778899888876664666654 46899998765555
Q ss_pred EEEe
Q 021399 227 KTYV 230 (313)
Q Consensus 227 ~~~~ 230 (313)
..+.
T Consensus 249 faf~ 252 (933)
T KOG2114|consen 249 FAFE 252 (933)
T ss_pred eeec
Confidence 5554
No 365
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=95.55 E-value=0.52 Score=33.04 Aligned_cols=55 Identities=15% Similarity=0.356 Sum_probs=42.3
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~ 220 (313)
+.++.|++|..||+|+-. ..+.++. ....|++++-... ..++-+..+|+|-+|+-
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~----e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEIT----ETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEe----cccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 578999999999999854 3444442 4567888887766 56899999999998875
No 366
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.51 E-value=1.9 Score=39.31 Aligned_cols=150 Identities=15% Similarity=0.238 Sum_probs=84.5
Q ss_pred ceeEEEEccCCCEEEEee---CCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCC----CeEEEeeCCCcEEEEECC--
Q 021399 12 PLTYLKYNKDGDLLFSCA---KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS----MTLITGSADQTAKLWNVE-- 82 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s---~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~----~~l~s~s~D~~v~vWd~~-- 82 (313)
++..++|. ||+.++-.. .+|.++. .+.+.++.|+ .|..++|.|-+ -.++.....+.|.||-+.
T Consensus 21 PvhGlaWT-DGkqVvLT~L~l~~gE~kf---Gds~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s 92 (671)
T PF15390_consen 21 PVHGLAWT-DGKQVVLTDLQLHNGEPKF---GDSKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPS 92 (671)
T ss_pred cccceEec-CCCEEEEEeeeeeCCcccc---CCccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEeccC
Confidence 57788997 676655443 2444442 3344555554 47889998753 245556778899999874
Q ss_pred ---CCeEE--EEecCC----CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399 83 ---TGAQL--FTFNFD----SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (313)
Q Consensus 83 ---~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (313)
.++.. ++.... --...+-|+|...++++.+..-..+....+ .....+..--..++.|++.+
T Consensus 93 ~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~----------~d~srVkaDi~~~G~IhCAC 162 (671)
T PF15390_consen 93 TTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVH----------CDSSRVKADIKTSGLIHCAC 162 (671)
T ss_pred ccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeee----------eCCceEEEeccCCceEEEEE
Confidence 22222 222222 123345577766655554332111111111 01222333334578899999
Q ss_pred EccCCCEEEEeeC-CCeEEEEECCCCc
Q 021399 154 WGPLNRTIISAGE-DAIVRIWDTETGK 179 (313)
Q Consensus 154 ~~~~~~~i~t~~~-d~~i~lwd~~~~~ 179 (313)
|.++|++++.+-. .=.-++||-..+.
T Consensus 163 WT~DG~RLVVAvGSsLHSyiWd~~qKt 189 (671)
T PF15390_consen 163 WTKDGQRLVVAVGSSLHSYIWDSAQKT 189 (671)
T ss_pred ecCcCCEEEEEeCCeEEEEEecCchhh
Confidence 9999998877643 3345799965543
No 367
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.41 E-value=1.3 Score=36.66 Aligned_cols=56 Identities=25% Similarity=0.397 Sum_probs=43.4
Q ss_pred EEEccCCCEEEEeeCC-----CCeEEEeCCCC-cEEEEecCCCCceEEEEECCCCCeEEEee
Q 021399 16 LKYNKDGDLLFSCAKD-----HTPTVWFADNG-ERLGTYRGHNGAVWCCDVSRDSMTLITGS 71 (313)
Q Consensus 16 ~~fs~~g~~l~s~s~d-----~~i~iw~~~~~-~~~~~~~~H~~~V~~~~~~~~~~~l~s~s 71 (313)
=.|||||.+|+..-.| |.|-|||...+ ..+.++..|.-.-..+.+.+||+.++.+.
T Consensus 119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 4699999999987665 67889998755 34677888776666788999999887654
No 368
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.26 E-value=2.6 Score=39.31 Aligned_cols=224 Identities=16% Similarity=0.141 Sum_probs=98.7
Q ss_pred CCCEEEEeeCCC------CeEEEeCCCCcEEE--EecCCCCceEEEEECCCCCeEEEeeCC------CcEEEEECCCCeE
Q 021399 21 DGDLLFSCAKDH------TPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSAD------QTAKLWNVETGAQ 86 (313)
Q Consensus 21 ~g~~l~s~s~d~------~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D------~~v~vWd~~~~~~ 86 (313)
.+..++.||.++ .+..+|..+++-.. .+..... -.++++. ++.+.++||.| .++..||+...+=
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~-~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRC-RVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccc-cccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce
Confidence 455666777663 56677877764322 2222222 2233333 46788999999 4566777776551
Q ss_pred EEEecCCCCeeEEE--eecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 87 LFTFNFDSPARSVD--FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 87 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
........+...+. ...+-..+++..+....+. .+..++...+... .+..+. ..+-...+-.-.+..++.|
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~-svE~YDp~~~~W~----~va~m~--~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLN-SVECYDPVTNKWT----PVAPML--TRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccc-cEEEecCCCCccc----ccCCCC--cceeeeEEEEECCEEEEEc
Confidence 11111222222222 2223333333333221111 1111111110000 000000 0011111112345667777
Q ss_pred eCCC------eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCc-----EEEEECCCCcEEEEEecCC
Q 021399 165 GEDA------IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS-----AKLWDARTLELIKTYVTER 233 (313)
Q Consensus 165 ~~d~------~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~ 233 (313)
|.++ .+..+|+.+.+= .....-.--..... ++ .-++...+.|+.|+. |..+|.++.+-...-....
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W-~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTW-TLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred CcCCCccccceEEEEcCCCCce-eecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 7554 467888776541 11111000011111 22 235778888888873 6678887754322211122
Q ss_pred ceeEEEeccCCCEEEEcccccCc
Q 021399 234 PVNAVTMSPLLDHVVLGGGQDAS 256 (313)
Q Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~~ 256 (313)
+...+.....++.+++.||.++.
T Consensus 512 ~rs~~g~~~~~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 512 PRSAVGVVVLGGKLYAVGGFDGN 534 (571)
T ss_pred ccccccEEEECCEEEEEecccCc
Confidence 22333334455677777776553
No 369
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=95.20 E-value=1 Score=39.78 Aligned_cols=155 Identities=14% Similarity=0.155 Sum_probs=79.3
Q ss_pred ceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeee---C
Q 021399 54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR---D 130 (313)
Q Consensus 54 ~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 130 (313)
.|..++|+++...|+.|-..|-|-||.....+.-.. ....+.....+.+ +...+....+.++.. .
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~-~~~~~~~~~~~~~-----------~~~~~~~~~l~di~~r~~~ 70 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGN-REQPPDLDYNFRR-----------FSLNNSPGKLTDISDRAPP 70 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S-------------GGGSS-SEEE-GGG--T
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCc-cCCCcccCccccc-----------ccccCCCcceEEehhhCCc
Confidence 578899999888899999999999887543221100 0000000000000 000011111111111 0
Q ss_pred CCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccc-----cCceeceEEEEEC-----
Q 021399 131 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-----TGHKKTITSLAKA----- 200 (313)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~-----~~h~~~v~~~~~s----- 200 (313)
....+-.+...+...+++|..++.+. -.+++.|.++|.+.|.|++....+...... ......++++.|+
T Consensus 71 ~~~~gf~P~~l~~~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 71 SLKEGFLPLTLLDAKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp T-SEEEEEEEEE---S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T
T ss_pred ccccccCchhheeccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC
Confidence 00112234455556688999998874 457899999999999999876655442111 1234457777664
Q ss_pred CCC---CEEEEeeCCCcEEEEECC
Q 021399 201 ADG---SHFLTGSLDKSAKLWDAR 221 (313)
Q Consensus 201 ~~~---~~l~s~s~dg~i~iwd~~ 221 (313)
.|+ -.++.|...|.+.+|.+-
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEE
T ss_pred CCcccceEEEEEeCCCCEEEEEEe
Confidence 233 368889999999999764
No 370
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=95.19 E-value=0.0066 Score=56.77 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=46.3
Q ss_pred eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEE-----------ECCCCCeEEEeeCCCcEEEEEC
Q 021399 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD-----------VSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~-----------~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
..+-|-++.-++..+-.++.+++...++... .-+++|...+..++ ++|||+.|+++..||.++.|.+
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 3344455566777777888988876655433 45667876554433 5888888888888998888864
No 371
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.16 E-value=1.4 Score=35.83 Aligned_cols=69 Identities=13% Similarity=0.081 Sum_probs=54.7
Q ss_pred CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceE-EEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-CCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (313)
Q Consensus 22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~-~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~ 91 (313)
|++++-|...|.+++-+.++|.++..+..-+ .|. .....+++.++.-++.|++...-|+.+..++....
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 6778889999999999999998887776532 332 23456788999999999999999999888877654
No 372
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.14 E-value=0.0087 Score=53.87 Aligned_cols=117 Identities=18% Similarity=0.256 Sum_probs=70.7
Q ss_pred cCCCCceEEEEEccCCCEEEEee-----CCCeEEEEECCCC--ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcE
Q 021399 143 KGPQGRINRAVWGPLNRTIISAG-----EDAIVRIWDTETG--KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 215 (313)
Q Consensus 143 ~~~~~~i~~~~~~~~~~~i~t~~-----~d~~i~lwd~~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i 215 (313)
.++....++++|++.+..++.+| .|..+.|||+.++ .+........+......+++|..+.+.+.+|.....+
T Consensus 99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~ 178 (783)
T KOG1008|consen 99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSV 178 (783)
T ss_pred ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchh
Confidence 44566778899988754444444 3557999998876 2222111111233455688999999999999999999
Q ss_pred EEEECCCCcEEEEEecCCceeEEEeccC-CCEEEEcccccCceeEeec
Q 021399 216 KLWDARTLELIKTYVTERPVNAVTMSPL-LDHVVLGGGQDASAVTTTD 262 (313)
Q Consensus 216 ~iwd~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~ 262 (313)
.++|++-...-........+..+...|. .++++.. . ...+..||
T Consensus 179 ~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~-~--dg~iAiwD 223 (783)
T KOG1008|consen 179 HIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN-S--DGDIAIWD 223 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc-c--cCceeecc
Confidence 9999983221111112234556777784 4444322 2 34455555
No 373
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.08 E-value=0.046 Score=43.18 Aligned_cols=63 Identities=27% Similarity=0.173 Sum_probs=45.4
Q ss_pred CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCC-CceEEEEECCCCCeEEEe--eCCCcEEEEECCC
Q 021399 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITG--SADQTAKLWNVET 83 (313)
Q Consensus 21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l~s~--s~D~~v~vWd~~~ 83 (313)
++.+..++..|+.||.|+.+.++.+.....|. .++.....+..++.++.+ |.|..++.|++..
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 34578888999999999999999988888887 455444444455556666 6666666666643
No 374
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.07 E-value=2.8 Score=38.69 Aligned_cols=70 Identities=11% Similarity=0.044 Sum_probs=45.4
Q ss_pred CCEEEEeeCCCCeEEEeCCCCcEEEEecC--CCC--ceEE-EEECCCCCeEEEee-----CCCcEEEEECCCCeEEEEec
Q 021399 22 GDLLFSCAKDHTPTVWFADNGERLGTYRG--HNG--AVWC-CDVSRDSMTLITGS-----ADQTAKLWNVETGAQLFTFN 91 (313)
Q Consensus 22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~--H~~--~V~~-~~~~~~~~~l~s~s-----~D~~v~vWd~~~~~~~~~~~ 91 (313)
+.+++.++.|+.+.-.|.++|+.+..... +.. .+.+ ..+. ++.+++..+ .+|.|...|.++++.++...
T Consensus 120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 34677788899999999999999876652 221 1211 1111 344443322 37899999999999988765
Q ss_pred C
Q 021399 92 F 92 (313)
Q Consensus 92 ~ 92 (313)
.
T Consensus 199 ~ 199 (527)
T TIGR03075 199 T 199 (527)
T ss_pred C
Confidence 3
No 375
>PHA02713 hypothetical protein; Provisional
Probab=94.85 E-value=3.3 Score=38.56 Aligned_cols=63 Identities=6% Similarity=0.091 Sum_probs=33.6
Q ss_pred CCEEEEeeCC------CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC--cEEEEECCC
Q 021399 158 NRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK--SAKLWDART 222 (313)
Q Consensus 158 ~~~i~t~~~d------~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg--~i~iwd~~~ 222 (313)
+..++.||.+ ..+..||+.+......+............+++ ++...+.|+.|+ .+-.||..+
T Consensus 464 ~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~ 534 (557)
T PHA02713 464 DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT 534 (557)
T ss_pred CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence 4556667654 24678998762122222221112223333333 678888999888 445555544
No 376
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.74 E-value=2.4 Score=36.29 Aligned_cols=122 Identities=14% Similarity=0.178 Sum_probs=65.0
Q ss_pred CeEEEEECCCC----ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc-EEEEEecCCceeEEEecc
Q 021399 168 AIVRIWDTETG----KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE-LIKTYVTERPVNAVTMSP 242 (313)
Q Consensus 168 ~~i~lwd~~~~----~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~p 242 (313)
|.|.++++... ..+..+.. ....+.|++++.- ++. |+.+. .+.|.+|++...+ ....-....+...++...
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 88999988763 22222211 2346789998765 444 44443 4789999998877 544444444445556666
Q ss_pred CCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeE
Q 021399 243 LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~ 304 (313)
.++.++++....+..+..++.....+..- .. ......++++.|=+|++.+.
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~v----------a~-d~~~~~v~~~~~l~d~~~~i 188 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEENNKLILV----------AR-DYQPRWVTAAEFLVDEDTII 188 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETTTE-EEEE----------EE-ESS-BEEEEEEEE-SSSEEE
T ss_pred cccEEEEEEcccCEEEEEEEccCCEEEEE----------Ee-cCCCccEEEEEEecCCcEEE
Confidence 67777776555554444444322222110 00 01244677777776665333
No 377
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.66 E-value=2 Score=35.03 Aligned_cols=73 Identities=12% Similarity=0.028 Sum_probs=54.1
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC
Q 021399 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 233 (313)
+++++.|...|.++..+.+++..+..+... ..-.+.+ ...+++..|..|+.|++...-|.++..++.+.+...
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~--~~vk~~a-~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG 135 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL--ETVKVRA-QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGG 135 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeeh--hhhccce-EEcCCCceEEEecCCCcEEEecccccceEEecccCC
Confidence 456888999999999999998665544321 1112222 356788999999999999999999999988765433
No 378
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.26 E-value=0.22 Score=48.07 Aligned_cols=73 Identities=19% Similarity=0.378 Sum_probs=54.7
Q ss_pred CCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEE
Q 021399 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (313)
Q Consensus 145 ~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd 219 (313)
.++++.+++|+.+|..++.|-.+|.|.+||+..++.++.+.....-...+.-+.+..+++.++++..-|. +|.
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence 3578999999999999999999999999999988887766432222233444556667777888887775 554
No 379
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=94.24 E-value=0.77 Score=40.58 Aligned_cols=86 Identities=14% Similarity=0.189 Sum_probs=60.4
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCce-EEEEE-CCCC---------------C--e
Q 021399 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV-WCCDV-SRDS---------------M--T 66 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V-~~~~~-~~~~---------------~--~ 66 (313)
|......+.+++.+|++.+.+....=|+|.++|+.++..++..+|.+++= .-+.. .+.. . +
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 34455567889999999988888777999999999999988888876532 11111 1111 1 2
Q ss_pred EEEeeCCCcEEEEECCCCeEEEEec
Q 021399 67 LITGSADQTAKLWNVETGAQLFTFN 91 (313)
Q Consensus 67 l~s~s~D~~v~vWd~~~~~~~~~~~ 91 (313)
++=+-.-|.|.||.+..+..+..+.
T Consensus 383 vIyaprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred EEEeccCCeEEEEecCCCCEEEEEE
Confidence 2335678999999999887765544
No 380
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.99 E-value=2 Score=40.05 Aligned_cols=96 Identities=21% Similarity=0.259 Sum_probs=63.1
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEE--CCCCCEEEEeeCCCcEEEEECC---------CCcEEEEEe
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK--AADGSHFLTGSLDKSAKLWDAR---------TLELIKTYV 230 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~~~~~l~s~s~dg~i~iwd~~---------~~~~~~~~~ 230 (313)
++-+....+.|||.+.+.+-.+. .....+.|.++.| .|+|+.|++.+..+.|.++.-. +..+++++.
T Consensus 45 ~V~~~~~~LtIWD~~~~~lE~~~--~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~ 122 (631)
T PF12234_consen 45 VVDSSRSELTIWDTRSGVLEYEE--SFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID 122 (631)
T ss_pred EEECCCCEEEEEEcCCcEEEEee--eecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence 33444567999999877643322 1234678999887 4789999999999999998531 224455542
Q ss_pred ----cCCceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399 231 ----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH 263 (313)
Q Consensus 231 ----~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (313)
.+.+|...+|.++|.-++.+| +.+.++|.
T Consensus 123 i~~~T~h~Igds~Wl~~G~LvV~sG----Nqlfv~dk 155 (631)
T PF12234_consen 123 ISSHTPHPIGDSIWLKDGTLVVGSG----NQLFVFDK 155 (631)
T ss_pred eecCCCCCccceeEecCCeEEEEeC----CEEEEECC
Confidence 246788899988876554443 33455554
No 381
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.97 E-value=0.24 Score=39.30 Aligned_cols=63 Identities=16% Similarity=0.241 Sum_probs=41.4
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecccccCce-eceEEEEECCCCCEEEEe--eCCCcEEEEECCCCc
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHK-KTITSLAKAADGSHFLTG--SLDKSAKLWDARTLE 224 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~--s~dg~i~iwd~~~~~ 224 (313)
....++..|+.||.|+.+-.+.+.... .|+ ..+..+..+..+.+++++ |.|..++.|+++...
T Consensus 115 ~~~c~~~~dg~ir~~n~~p~k~~g~~g---~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 115 SLGCVGAQDGRIRACNIKPNKVLGYVG---QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred ceeEEeccCCceeeeccccCceeeeec---cccCCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 356788999999999987666554333 344 344444444555667776 777777777776433
No 382
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.91 E-value=4.5 Score=37.87 Aligned_cols=115 Identities=14% Similarity=0.289 Sum_probs=60.3
Q ss_pred EEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecC--CCCeeEEEeec---CCeEEEEECCCceeccccceeeeeeeCCC
Q 021399 58 CDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNF--DSPARSVDFAV---GDKLAVITTDPFMELNSAIHVKRIARDPA 132 (313)
Q Consensus 58 ~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (313)
+.-+.-++..+.-+....+.|||...+.......+ ..++..++|.. +..++.+.......+....+.......+.
T Consensus 35 i~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~ 114 (631)
T PF12234_consen 35 ISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPS 114 (631)
T ss_pred EeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcc
Confidence 33344455444444556799999998876655444 66788887753 33444444443333222221111111110
Q ss_pred CCCCceEEEecCCC-CceEEEEEccCCCEEEEeeCCCeEEEEEC
Q 021399 133 DQGGESVLILKGPQ-GRINRAVWGPLNRTIISAGEDAIVRIWDT 175 (313)
Q Consensus 133 ~~~~~~~~~~~~~~-~~i~~~~~~~~~~~i~t~~~d~~i~lwd~ 175 (313)
-. ......+.++. .+|.+..|-++|..++.+| +.+.|+|-
T Consensus 115 w~-~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 115 WA-PIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred cc-eeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 00 01111223333 5788999999987655444 56788874
No 383
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=93.44 E-value=4.3 Score=34.40 Aligned_cols=159 Identities=11% Similarity=0.122 Sum_probs=72.3
Q ss_pred cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (313)
Q Consensus 9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~ 88 (313)
-...+..+.-++||++++.++......-||--...-....+.-...|.++.|.|++.+.+.+ +.|.++.=+.......+
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w 221 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW 221 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence 34567788889999988877665555667533222222233345789999999998765543 66766654311110000
Q ss_pred EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCC
Q 021399 89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168 (313)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~ 168 (313)
... .. +. ....-.+..++|.+..+..++|+. |
T Consensus 222 ~~~-----------------------~~--------------~~----------~~~~~~~ld~a~~~~~~~wa~gg~-G 253 (302)
T PF14870_consen 222 SEP-----------------------II--------------PI----------KTNGYGILDLAYRPPNEIWAVGGS-G 253 (302)
T ss_dssp --------------------------B---------------TT----------SS--S-EEEEEESSSS-EEEEEST-T
T ss_pred ccc-----------------------cC--------------Cc----------ccCceeeEEEEecCCCCEEEEeCC-c
Confidence 000 00 00 000113566778877776665554 4
Q ss_pred eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEE
Q 021399 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218 (313)
Q Consensus 169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iw 218 (313)
.+ +.....++..++......-......+.|..+.+-++ -+.+|.+.-|
T Consensus 254 ~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 254 TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp -E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred cE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 43 344555665554433223345677777765544444 4557766544
No 384
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.34 E-value=5.4 Score=35.31 Aligned_cols=135 Identities=15% Similarity=0.099 Sum_probs=58.1
Q ss_pred eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee--------------------CCCcEEEEECCCCcEEEE
Q 021399 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--------------------LDKSAKLWDARTLELIKT 228 (313)
Q Consensus 169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--------------------~dg~i~iwd~~~~~~~~~ 228 (313)
-+-+.|-++.....+-....+...--..+-+.|..+.++|.. .-.++.+||+++.+.+++
T Consensus 158 gf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~ 237 (461)
T PF05694_consen 158 GFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQT 237 (461)
T ss_dssp EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEE
T ss_pred cEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeE
Confidence 455666655444433322112223345566667767666653 346799999999999999
Q ss_pred EecCC---ceeE--EEeccCCCEEEEcccccCceeEeeccCCCceeee-eeehhhh--------hhhccccccccceeEE
Q 021399 229 YVTER---PVNA--VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK-FFDKILQ--------EEIGGVKGHFGPINAL 294 (313)
Q Consensus 229 ~~~~~---~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------~~~~~~~~h~~~V~~~ 294 (313)
+.... ..-. -++.|...+-++++.-....+.++....+.+..+ ..+.... ..+..+.+-..-|++|
T Consensus 238 idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI 317 (461)
T PF05694_consen 238 IDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI 317 (461)
T ss_dssp EES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------E
T ss_pred EecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeE
Confidence 86432 1222 3347777766666543333344444344554332 2222111 1223344446778999
Q ss_pred EECCCCCee
Q 021399 295 AFNPDGKRY 303 (313)
Q Consensus 295 ~fspdgk~~ 303 (313)
.+|.|.|.|
T Consensus 318 ~iSlDDrfL 326 (461)
T PF05694_consen 318 LISLDDRFL 326 (461)
T ss_dssp EE-TTS-EE
T ss_pred EEccCCCEE
Confidence 999999875
No 385
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=93.25 E-value=7 Score=36.50 Aligned_cols=63 Identities=11% Similarity=0.082 Sum_probs=36.4
Q ss_pred CCCEEEEeeCC------CCeEEEeCCCCcEEE--EecCCCCceEEEEECCCCCeEEEeeCCCc-----EEEEECCCCe
Q 021399 21 DGDLLFSCAKD------HTPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSADQT-----AKLWNVETGA 85 (313)
Q Consensus 21 ~g~~l~s~s~d------~~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D~~-----v~vWd~~~~~ 85 (313)
+|...++||.| ..+..||..+.+-.. .+...+....... -+|.+.+.||.||. +..||+.+.+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~ 407 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNK 407 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCc
Confidence 57788888888 234566666655221 1111111111111 25788899999854 7788877654
No 386
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.20 E-value=5.7 Score=35.17 Aligned_cols=152 Identities=15% Similarity=0.144 Sum_probs=67.4
Q ss_pred ccCCCEEEEee--CC----CCeEEEeCCCCcEEEEecCCCC---ceEEEEECCCCCeEEEeeC-----------------
Q 021399 19 NKDGDLLFSCA--KD----HTPTVWFADNGERLGTYRGHNG---AVWCCDVSRDSMTLITGSA----------------- 72 (313)
Q Consensus 19 s~~g~~l~s~s--~d----~~i~iw~~~~~~~~~~~~~H~~---~V~~~~~~~~~~~l~s~s~----------------- 72 (313)
-|+|+.++|+= .+ |-+.+.|-++-+.+...+...+ .-....|.|..+.++|...
T Consensus 138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~ 217 (461)
T PF05694_consen 138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA 217 (461)
T ss_dssp -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence 47899998853 22 3456778777777666654322 2234556676666666442
Q ss_pred ---CCcEEEEECCCCeEEEEecCCCC---eeEEEeecC--CeEEEE---ECCCceeccc-cceeeeeeeCCCCCCCceEE
Q 021399 73 ---DQTAKLWNVETGAQLFTFNFDSP---ARSVDFAVG--DKLAVI---TTDPFMELNS-AIHVKRIARDPADQGGESVL 140 (313)
Q Consensus 73 ---D~~v~vWd~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 140 (313)
-.++.+||..+.+.++++..... ...+.|..+ .....+ .+...+.... ....|. .+.+.
T Consensus 218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~---------a~kVi 288 (461)
T PF05694_consen 218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA---------AEKVI 288 (461)
T ss_dssp H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE---------EEEEE
T ss_pred ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee---------eeEEE
Confidence 36799999999999988876532 334444432 221111 1111111111 000010 01111
Q ss_pred EecC--------C---------CCceEEEEEccCCCEE-EEeeCCCeEEEEECCCCc
Q 021399 141 ILKG--------P---------QGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGK 179 (313)
Q Consensus 141 ~~~~--------~---------~~~i~~~~~~~~~~~i-~t~~~d~~i~lwd~~~~~ 179 (313)
.+.. + ..-|+.+.++.+++++ +++-.+|.||.||+....
T Consensus 289 ~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 289 DIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp EE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred ECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 1110 0 2346788899988876 566789999999987643
No 387
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=93.18 E-value=0.13 Score=28.42 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=16.6
Q ss_pred ccceeEEEECCCCCeeEEEEEE
Q 021399 288 FGPINALAFNPDGKRYGFLLLQ 309 (313)
Q Consensus 288 ~~~V~~~~fspdgk~~~~~~~~ 309 (313)
.+.-...+||||||+++|..-+
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEEC
T ss_pred CccccCEEEecCCCEEEEEecC
Confidence 4456778999999999998653
No 388
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=92.92 E-value=0.56 Score=26.56 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=25.7
Q ss_pred cceeEEEEccC-C--CEEEEeeCCCCeEEEeCCC
Q 021399 11 RPLTYLKYNKD-G--DLLFSCAKDHTPTVWFADN 41 (313)
Q Consensus 11 ~~v~~~~fs~~-g--~~l~s~s~d~~i~iw~~~~ 41 (313)
+.|.++.|||+ + ++|+-+-.-+.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 46899999975 4 5888888889999999874
No 389
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.89 E-value=0.82 Score=42.42 Aligned_cols=73 Identities=18% Similarity=0.237 Sum_probs=43.5
Q ss_pred CCCEEEEeeCCCeEEEEECCC----Cceeeeccccc-------------------CceeceEEEEECC----CCCEEEEe
Q 021399 157 LNRTIISAGEDAIVRIWDTET----GKLLKESDKET-------------------GHKKTITSLAKAA----DGSHFLTG 209 (313)
Q Consensus 157 ~~~~i~t~~~d~~i~lwd~~~----~~~~~~~~~~~-------------------~h~~~v~~~~~s~----~~~~l~s~ 209 (313)
+...++.+..||.+....... +.......... .-.....+++.+. +..++++.
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 455677778888877766543 22222111100 0123455566666 77899999
Q ss_pred eCCCcEEEEECCCCcEEEEE
Q 021399 210 SLDKSAKLWDARTLELIKTY 229 (313)
Q Consensus 210 s~dg~i~iwd~~~~~~~~~~ 229 (313)
+.|+++|+||+++++++.+.
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEe
Confidence 99999999999999997765
No 390
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.81 E-value=7.2 Score=35.27 Aligned_cols=32 Identities=19% Similarity=0.477 Sum_probs=24.3
Q ss_pred eEEEEEccCC---CEEEEeeCCCeEEEEECCCCce
Q 021399 149 INRAVWGPLN---RTIISAGEDAIVRIWDTETGKL 180 (313)
Q Consensus 149 i~~~~~~~~~---~~i~t~~~d~~i~lwd~~~~~~ 180 (313)
+..+.|+|++ ..++.-+.|..||+||......
T Consensus 168 l~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 168 LKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred eeeccccCCccCCceEEEEecCcEEEEEecCCcch
Confidence 4567788875 5777788899999999866443
No 391
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.77 E-value=5.5 Score=33.86 Aligned_cols=70 Identities=14% Similarity=0.128 Sum_probs=43.5
Q ss_pred eeEEEEccCCCEEEEeeC---------CCCeEEEeCC-CCcEEEEecCCCCceEEEEECCCCCeEEEeeC-CCcEEEEEC
Q 021399 13 LTYLKYNKDGDLLFSCAK---------DHTPTVWFAD-NGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQTAKLWNV 81 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~---------d~~i~iw~~~-~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~-D~~v~vWd~ 81 (313)
.+.+...|+|.+-++... -..-+||.+. .+..+..+..|-..-+.++||||++.|+.+.. .+.|.-|++
T Consensus 113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence 456777888887776544 1112466555 45555555555444477999999987766654 356665555
Q ss_pred C
Q 021399 82 E 82 (313)
Q Consensus 82 ~ 82 (313)
.
T Consensus 193 d 193 (307)
T COG3386 193 D 193 (307)
T ss_pred C
Confidence 4
No 392
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.75 E-value=5.9 Score=34.13 Aligned_cols=104 Identities=13% Similarity=0.170 Sum_probs=54.2
Q ss_pred eEEEEEccCCCEEEEeeCCCeEEEEECCCCce---eeec-ccccCceeceEEEEECCC----CCEEEEeeCC--------
Q 021399 149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKL---LKES-DKETGHKKTITSLAKAAD----GSHFLTGSLD-------- 212 (313)
Q Consensus 149 i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~---~~~~-~~~~~h~~~v~~~~~s~~----~~~l~s~s~d-------- 212 (313)
-..++|.|+++.++ +...|.|++++ ..+.. +... ............++++|+ +...++.+..
T Consensus 4 P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 4 PRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp EEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred ceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 35678899987655 56699999999 33332 2222 112234567899999984 4444444421
Q ss_pred CcEEEEECCCC-------c-EEEEEec----CCceeEEEeccCCCEEEEcccccC
Q 021399 213 KSAKLWDARTL-------E-LIKTYVT----ERPVNAVTMSPLLDHVVLGGGQDA 255 (313)
Q Consensus 213 g~i~iwd~~~~-------~-~~~~~~~----~~~~~~~~~~p~~~~~~~~~~~~~ 255 (313)
..|.=|..... + .+..+.. .+....++|.|++ .++++.|+..
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~ 135 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCC
Confidence 12332333222 1 1112222 2346779999998 6666655443
No 393
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.59 E-value=11 Score=36.64 Aligned_cols=71 Identities=18% Similarity=0.253 Sum_probs=48.5
Q ss_pred CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceE-------------EEEECC--CCCeEEEeeC----------CCcE
Q 021399 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVW-------------CCDVSR--DSMTLITGSA----------DQTA 76 (313)
Q Consensus 22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~-------------~~~~~~--~~~~l~s~s~----------D~~v 76 (313)
+.+++.++.|+.+.-.|.++|+.+..|.. .+.|. ...-.| .+..++.|+. +|.|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence 45788888999999999999999877642 22221 111112 1335555543 6889
Q ss_pred EEEECCCCeEEEEecCC
Q 021399 77 KLWNVETGAQLFTFNFD 93 (313)
Q Consensus 77 ~vWd~~~~~~~~~~~~~ 93 (313)
+-+|.++++.++.+...
T Consensus 339 ~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPG 355 (764)
T ss_pred EEEECCCCcEeeEEecC
Confidence 99999999999887643
No 394
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.45 E-value=1 Score=25.03 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=26.5
Q ss_pred CCCCEEEEee-CCCcEEEEECCCCcEEEEEecCCceeEEE
Q 021399 201 ADGSHFLTGS-LDKSAKLWDARTLELIKTYVTERPVNAVT 239 (313)
Q Consensus 201 ~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 239 (313)
|++++|+.+. .+++|.++|..+++.+..+........++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~ 40 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVA 40 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEE
Confidence 4667665554 57899999999988887776543333333
No 395
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.44 E-value=8.7 Score=35.31 Aligned_cols=116 Identities=11% Similarity=0.088 Sum_probs=68.2
Q ss_pred CceEEEEEccCC----CEEEEeeCCCeEEEEECC-----CCceeeecccccCceec--eEEEEECCCCCEEEEeeCCCcE
Q 021399 147 GRINRAVWGPLN----RTIISAGEDAIVRIWDTE-----TGKLLKESDKETGHKKT--ITSLAKAADGSHFLTGSLDKSA 215 (313)
Q Consensus 147 ~~i~~~~~~~~~----~~i~t~~~d~~i~lwd~~-----~~~~~~~~~~~~~h~~~--v~~~~~s~~~~~l~s~s~dg~i 215 (313)
..+..+.|.|.+ ..++.......|.+|-+. .++.+.......+.... ...+.|+|....|+.-.....=
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 467888898763 345556667889999754 22222211111111111 2235588888776655544433
Q ss_pred EEEECCC--CcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399 216 KLWDART--LELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH 263 (313)
Q Consensus 216 ~iwd~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (313)
.+.+++. ......+...+.|.|.+|.++|+.++++.|+. ..-|+||.
T Consensus 137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSs-LHSyiWd~ 185 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSS-LHSYIWDS 185 (671)
T ss_pred EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCe-EEEEEecC
Confidence 4555543 23334455677899999999999999987763 23344443
No 396
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=92.39 E-value=5.3 Score=32.76 Aligned_cols=119 Identities=10% Similarity=0.161 Sum_probs=70.9
Q ss_pred ecCCCCceEEEEEccCCC-EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399 142 LKGPQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (313)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~-~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~ 220 (313)
+.+-...+..+.|.|+.+ .+++..+.+.|...+. +++.++++.. .+ -+..-.+++..++.++++--.++.+.++++
T Consensus 17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l-~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPL-DG-FGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE--SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeC-CC-CCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 344455688999999755 5666777888888886 4777776542 22 457788888888877776666899999987
Q ss_pred CCC--c----EEEEEe------cCCceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399 221 RTL--E----LIKTYV------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH 263 (313)
Q Consensus 221 ~~~--~----~~~~~~------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (313)
... . ....+. .......++|.|..+.++++--.+-..++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 331 1 112222 123478899999999888874333333444443
No 397
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=92.23 E-value=8.1 Score=34.46 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=42.2
Q ss_pred CCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCC--CCeeEEEeecCCeEEEE
Q 021399 52 NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDKLAVI 110 (313)
Q Consensus 52 ~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 110 (313)
.+++..+++||+++.++--..+|.+.+.+.+-.+....+... ..+..+.|+-.+.+++.
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~ 276 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLS 276 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEE
Confidence 367999999999999988888999988876555554444433 45566777766555444
No 398
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.13 E-value=6.2 Score=32.92 Aligned_cols=190 Identities=13% Similarity=0.166 Sum_probs=101.0
Q ss_pred cCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCC--CCeeEEEeecCCeEEEEECCC----ceeccccc
Q 021399 49 RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDKLAVITTDP----FMELNSAI 122 (313)
Q Consensus 49 ~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 122 (313)
.+-...|.++.|+|+.+.|++......-.||=..+|+.+.++... ...-.+.+..++++++..... .+.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 444455999999999988888777778888877888888776532 233344455555555443211 00111110
Q ss_pred eeeeeeeCCCCCCCceEEEec--CC-CCceEEEEEccCCCEEEEeeCCCeEEEEECCCCc-eeeecccccCc-------e
Q 021399 123 HVKRIARDPADQGGESVLILK--GP-QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGH-------K 191 (313)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~--~~-~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~-~~~~~~~~~~h-------~ 191 (313)
..... ......+. .+ +...-.++|.|.+..+..+-+-.-+.|+..+... .+. ......+ -
T Consensus 162 ~~~~~--------~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~-~~~~~~~~~~~~~f~ 232 (316)
T COG3204 162 TVISA--------KVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLS-VHASLDPTADRDLFV 232 (316)
T ss_pred cEEec--------cceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccc-cccccCcccccceEe
Confidence 00000 00011111 11 2234578899999999999888878888765332 111 1001111 2
Q ss_pred eceEEEEECCCCCE-EEEeeCCCcEEEEECCCCcEEEEEec----------CCceeEEEeccCCCEEE
Q 021399 192 KTITSLAKAADGSH-FLTGSLDKSAKLWDARTLELIKTYVT----------ERPVNAVTMSPLLDHVV 248 (313)
Q Consensus 192 ~~v~~~~~s~~~~~-l~s~s~dg~i~iwd~~~~~~~~~~~~----------~~~~~~~~~~p~~~~~~ 248 (313)
..+.++.|.+..+. ++-+-.++.+.-.|.+ ++++..+.. -.....+++.+.+...+
T Consensus 233 ~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYI 299 (316)
T COG3204 233 LDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYI 299 (316)
T ss_pred eccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEE
Confidence 34666777765444 4455556666666654 444433321 11345566666554433
No 399
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.08 E-value=6.3 Score=34.52 Aligned_cols=96 Identities=17% Similarity=0.143 Sum_probs=48.1
Q ss_pred EEEEEccCCCEEEEee-----------CCC-eEEEEECCC--Cceee-ecccccCceeceEEEEECCCCCEEEEeeCCCc
Q 021399 150 NRAVWGPLNRTIISAG-----------EDA-IVRIWDTET--GKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214 (313)
Q Consensus 150 ~~~~~~~~~~~i~t~~-----------~d~-~i~lwd~~~--~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~ 214 (313)
..++|.++|+.+++-. ..+ .|.+++-.+ ++.-+ ++. .. .-...+.+++.++| .+++ ....-
T Consensus 17 ~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf-a~-~l~~p~Gi~~~~~G-lyV~-~~~~i 92 (367)
T TIGR02604 17 IAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF-AE-ELSMVTGLAVAVGG-VYVA-TPPDI 92 (367)
T ss_pred ceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe-ec-CCCCccceeEecCC-EEEe-CCCeE
Confidence 4567788888666542 223 677776432 32211 111 11 12345788888888 4444 44433
Q ss_pred EEEEECCC-------CcEEEE-Eec-----CCceeEEEeccCCCEEEE
Q 021399 215 AKLWDART-------LELIKT-YVT-----ERPVNAVTMSPLLDHVVL 249 (313)
Q Consensus 215 i~iwd~~~-------~~~~~~-~~~-----~~~~~~~~~~p~~~~~~~ 249 (313)
.++.|... .+.+.+ +.. ....+.++|.|++...+.
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~ 140 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFN 140 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEe
Confidence 33434421 112222 211 234678999998764443
No 400
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.85 E-value=0.21 Score=47.37 Aligned_cols=137 Identities=16% Similarity=0.126 Sum_probs=68.4
Q ss_pred cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEE-----------ECCCCCEEEEeeCCCcEEEEECC---
Q 021399 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA-----------KAADGSHFLTGSLDKSAKLWDAR--- 221 (313)
Q Consensus 156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~-----------~s~~~~~l~s~s~dg~i~iwd~~--- 221 (313)
+..-++..+-.++.|++........ ..+ .+|...+..++ .||||..++.++.||.++.|.+-
T Consensus 193 ~~~~~ic~~~~~~~i~lL~~~ra~~-~l~---rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g 268 (1283)
T KOG1916|consen 193 VNKVYICYGLKGGEIRLLNINRALR-SLF---RSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITG 268 (1283)
T ss_pred cccceeeeccCCCceeEeeechHHH-HHH---HhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeec
Confidence 4445566666777777654332110 111 23555544433 68999999999999999888543
Q ss_pred --CCcEEEEEecCCceeEEEeccCCC-EEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC
Q 021399 222 --TLELIKTYVTERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP 298 (313)
Q Consensus 222 --~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp 298 (313)
...|+.....+..-..+||..+.+ ...+.-+..-..+...| ..-++++|.....+++-.+ -...|..++ -+
T Consensus 269 ~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd---~nre~k~w~~a~w~Cll~~--~~d~v~iV~-p~ 342 (1283)
T KOG1916|consen 269 KIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTD---VNREEKFWAEAPWQCLLDK--LIDGVQIVG-PH 342 (1283)
T ss_pred cccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEeccc---CCcceeEeeccchhhhhhh--cccceEeec-CC
Confidence 223444443221111223322111 11122121111122222 2336788987777665222 244566666 66
Q ss_pred CCCe
Q 021399 299 DGKR 302 (313)
Q Consensus 299 dgk~ 302 (313)
||+.
T Consensus 343 ~~~v 346 (1283)
T KOG1916|consen 343 DGEV 346 (1283)
T ss_pred Cccc
Confidence 6665
No 401
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.74 E-value=2.2 Score=38.31 Aligned_cols=123 Identities=20% Similarity=0.257 Sum_probs=72.1
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCE-------EEEeeCCCcEEEEECCCCcE--EEEEec-
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-------FLTGSLDKSAKLWDARTLEL--IKTYVT- 231 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-------l~s~s~dg~i~iwd~~~~~~--~~~~~~- 231 (313)
.++.....|+-.|++.|+.+.+-.. ...|+-+.+.|+.+. -+.|-.|+.|.=||+|-... +..-..
T Consensus 350 ~~~~~~~~l~klDIE~GKIVeEWk~----~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 350 MDGGEQDKLYKLDIERGKIVEEWKF----EDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eCCCCcCcceeeecccceeeeEeec----cCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 4455666788889999887766432 233777777776553 34566788898999884322 111111
Q ss_pred ----CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399 232 ----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY 303 (313)
Q Consensus 232 ----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~ 303 (313)
...-.|.+-..+ .++++++ . ...+|+||..-.+...-+.+-..+|..|..+.|||.+
T Consensus 426 qy~~k~nFsc~aTT~s-G~IvvgS-~-------------~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwi 486 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTES-GYIVVGS-L-------------KGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWI 486 (644)
T ss_pred ccccccccceeeecCC-ceEEEee-c-------------CCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEE
Confidence 111122222222 2333322 1 1246777764344444567788999999999999983
No 402
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.43 E-value=2.1 Score=34.45 Aligned_cols=64 Identities=13% Similarity=0.292 Sum_probs=46.3
Q ss_pred EccCCCEEEEeeCCCCeEEEeCCCCcEEEE-------ec-------CCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 18 YNKDGDLLFSCAKDHTPTVWFADNGERLGT-------YR-------GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 18 fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~-------~~-------~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
+..++++|+.-..+|.+++||+.+++.+.. +. .....|..+.++.+|.-+++=+ +|....|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 456789999999999999999998876422 11 3456677788887777665543 4677777754
No 403
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.39 E-value=1.9 Score=34.63 Aligned_cols=67 Identities=13% Similarity=0.216 Sum_probs=47.1
Q ss_pred EccCCCEEEEeeCCCeEEEEECCCCceeeeccc----cc-------CceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDK----ET-------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (313)
Q Consensus 154 ~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~----~~-------~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~ 221 (313)
+...+.++++-+.+|.+++||+.+++.+-.... .. .....|..+..+.+|.-|++-+ +|..+.||..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 344567888899999999999998775432200 11 2456788888888887666654 5788888765
No 404
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.91 E-value=4.3 Score=36.49 Aligned_cols=60 Identities=22% Similarity=0.270 Sum_probs=43.2
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~ 221 (313)
..+|+.+++.|.|+|||.-... .++ ..++....|..+..+.+|+++++.+. ..+.+-|++
T Consensus 573 sGyIa~as~kGDirLyDRig~r-AKt--alP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKR-AKT--ALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcch-hhh--cCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 4689999999999999953221 111 12356778999999999999887775 456677754
No 405
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=90.72 E-value=1.6 Score=24.76 Aligned_cols=30 Identities=7% Similarity=0.086 Sum_probs=24.4
Q ss_pred ceEEEEECCCCC---EEEEeeCCCcEEEEECCC
Q 021399 193 TITSLAKAADGS---HFLTGSLDKSAKLWDART 222 (313)
Q Consensus 193 ~v~~~~~s~~~~---~l~s~s~dg~i~iwd~~~ 222 (313)
.++++.|+|+.. .|+-+=.-|.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 588999997544 777777788999999995
No 406
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.54 E-value=13 Score=35.80 Aligned_cols=33 Identities=18% Similarity=0.453 Sum_probs=27.1
Q ss_pred CCceEEEEEccC---CCEEEEeeCCCeEEEEECCCC
Q 021399 146 QGRINRAVWGPL---NRTIISAGEDAIVRIWDTETG 178 (313)
Q Consensus 146 ~~~i~~~~~~~~---~~~i~t~~~d~~i~lwd~~~~ 178 (313)
...|..+.|+|. +..++.-..|+++|+||+...
T Consensus 146 ~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 146 SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 346788899987 478899999999999998653
No 407
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=90.51 E-value=1.5 Score=40.67 Aligned_cols=72 Identities=25% Similarity=0.268 Sum_probs=43.0
Q ss_pred cCCCEEEEeeCCCCeEEEeCCC----CcEEEEe-----------cC-----------CCCceEEEEECC----CCCeEEE
Q 021399 20 KDGDLLFSCAKDHTPTVWFADN----GERLGTY-----------RG-----------HNGAVWCCDVSR----DSMTLIT 69 (313)
Q Consensus 20 ~~g~~l~s~s~d~~i~iw~~~~----~~~~~~~-----------~~-----------H~~~V~~~~~~~----~~~~l~s 69 (313)
++...++.+..||.+....... +...... .+ -.+.+.+++++. +..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 3666777777888877665543 2221111 10 012345566665 5678999
Q ss_pred eeCCCcEEEEECCCCeEEEEec
Q 021399 70 GSADQTAKLWNVETGAQLFTFN 91 (313)
Q Consensus 70 ~s~D~~v~vWd~~~~~~~~~~~ 91 (313)
-+.|+++|+||+.+++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999866553
No 408
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.01 E-value=14 Score=32.94 Aligned_cols=139 Identities=13% Similarity=0.152 Sum_probs=78.1
Q ss_pred eEEEEccCCCEEEEeeCCCCeEEEeCCC---CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 14 TYLKYNKDGDLLFSCAKDHTPTVWFADN---GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~---~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
+.+-|+..++.|++.-. |-+.=|.++. ..++..-..-+++|.++.|++|++.++.--.|.+|.+.+....+.....
T Consensus 26 ngvFfDDaNkqlfavrS-ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRS-GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEEec-CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 45777766666665443 3334454332 2233333456789999999999999999999999999987433322211
Q ss_pred c----C-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee
Q 021399 91 N----F-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (313)
Q Consensus 91 ~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~ 165 (313)
. . ...+..+-|.....++.+...+ +.+... . .....+...+.+.-.|+...|.++.+.++-++
T Consensus 105 ~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-------~e~y~v--~---pekrslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSSTEIAFITDQG-------IEFYQV--L---PEKRSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred HHHhccCcceeEEEEEecCeeEEEEecCC-------eEEEEE--c---hhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence 1 1 1224444455544444443322 111111 1 11223334456677788888888877655443
No 409
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=88.98 E-value=5.1 Score=35.54 Aligned_cols=99 Identities=11% Similarity=0.016 Sum_probs=61.3
Q ss_pred eceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCc--eeEEEeccCCCE-E-----EEcccccCceeEeecc
Q 021399 192 KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP--VNAVTMSPLLDH-V-----VLGGGQDASAVTTTDH 263 (313)
Q Consensus 192 ~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~p~~~~-~-----~~~~~~~~~~~~~~~~ 263 (313)
-.+.+++.+|++.+.|+...=|.|.++|+.++..++.++.-+. +.++......+. . .-........+.++-.
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap 387 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP 387 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence 4578889999999888887789999999999999988875433 333333222211 0 0000111234556666
Q ss_pred CCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399 264 RAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302 (313)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~ 302 (313)
|.+..| +|... |...|.+....+++|.
T Consensus 388 rRg~lE--vW~~~----------~g~Rv~a~~v~k~~rL 414 (415)
T PF14655_consen 388 RRGILE--VWSMR----------QGPRVAAFNVGKGCRL 414 (415)
T ss_pred cCCeEE--EEecC----------CCCEEEEEEeCCCcEE
Confidence 666655 46543 3456777777666664
No 410
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=88.49 E-value=13 Score=30.73 Aligned_cols=189 Identities=16% Similarity=0.171 Sum_probs=100.3
Q ss_pred CceEEEEECCCCCeEEEeeCCC--cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeC
Q 021399 53 GAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARD 130 (313)
Q Consensus 53 ~~V~~~~~~~~~~~l~s~s~D~--~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (313)
.....+.|..+|.++-|.|.-| .|+.+|+.+++.......+... +
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~----------F----------------------- 91 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRY----------F----------------------- 91 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-----------------------------------
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccc----------c-----------------------
Confidence 4456788877888888888765 7999999998766543322110 0
Q ss_pred CCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee
Q 021399 131 PADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS 210 (313)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 210 (313)
++-+..+ ... .+.-.-.++...+||..+-+.+.++.. ...=+.++ .|++.|+...
T Consensus 92 -----gEGit~~---~d~-----------l~qLTWk~~~~f~yd~~tl~~~~~~~y----~~EGWGLt--~dg~~Li~SD 146 (264)
T PF05096_consen 92 -----GEGITIL---GDK-----------LYQLTWKEGTGFVYDPNTLKKIGTFPY----PGEGWGLT--SDGKRLIMSD 146 (264)
T ss_dssp -----EEEEEEE---TTE-----------EEEEESSSSEEEEEETTTTEEEEEEE-----SSS--EEE--ECSSCEEEE-
T ss_pred -----ceeEEEE---CCE-----------EEEEEecCCeEEEEccccceEEEEEec----CCcceEEE--cCCCEEEEEC
Confidence 0001111 112 233345678889999998887777643 23445555 4556666665
Q ss_pred CCCcEEEEECCCCcEEEEEec---CC---ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh-hcc
Q 021399 211 LDKSAKLWDARTLELIKTYVT---ER---PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE-IGG 283 (313)
Q Consensus 211 ~dg~i~iwd~~~~~~~~~~~~---~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 283 (313)
-..+++++|.++.+..+.+.. .. .+|.+++- ...+++-.-.. ..+..-|..+|...- .+|...-.. ...
T Consensus 147 GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~t-d~I~~Idp~tG~V~~-~iDls~L~~~~~~ 222 (264)
T PF05096_consen 147 GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQT-DRIVRIDPETGKVVG-WIDLSGLRPEVGR 222 (264)
T ss_dssp SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTS-SEEEEEETTT-BEEE-EEE-HHHHHHHTS
T ss_pred CccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCC-CeEEEEeCCCCeEEE-EEEhhHhhhcccc
Confidence 567899999999888777642 12 35667765 23444432221 223333444444332 223321111 110
Q ss_pred c---cccccceeEEEECCCCCee
Q 021399 284 V---KGHFGPINALAFNPDGKRY 303 (313)
Q Consensus 284 ~---~~h~~~V~~~~fspdgk~~ 303 (313)
- ..-....+.||++|+.++|
T Consensus 223 ~~~~~~~~dVLNGIAyd~~~~~l 245 (264)
T PF05096_consen 223 DKSRQPDDDVLNGIAYDPETDRL 245 (264)
T ss_dssp TTST--TTS-EEEEEEETTTTEE
T ss_pred cccccccCCeeEeEeEeCCCCEE
Confidence 0 1114567999999998764
No 411
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.32 E-value=9.2 Score=31.95 Aligned_cols=104 Identities=10% Similarity=0.186 Sum_probs=72.3
Q ss_pred CCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 021399 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 225 (313)
Q Consensus 146 ~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 225 (313)
.+.+..+.|+|+.+.+++..+...--+|=...|+.++++... + -...-.+.+..+|.+.++-=.++++.++.++...-
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~-g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLT-G-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccc-c-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 345788999999999998888887777777788888876432 2 23455677888888877777888888887665421
Q ss_pred EE-----EEe-----c-CCceeEEEeccCCCEEEEcc
Q 021399 226 IK-----TYV-----T-ERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 226 ~~-----~~~-----~-~~~~~~~~~~p~~~~~~~~~ 251 (313)
+. ++. . ..--..++|.|....++++-
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK 199 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK 199 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEE
Confidence 11 111 1 22345799999888877763
No 412
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.69 E-value=20 Score=34.49 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=51.9
Q ss_pred CCceEEEEEccCCCEEEEeeCCCeEEEEECC----------CCc--eeee-c-----ccccCceeceEEEEECCC---CC
Q 021399 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTE----------TGK--LLKE-S-----DKETGHKKTITSLAKAAD---GS 204 (313)
Q Consensus 146 ~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~----------~~~--~~~~-~-----~~~~~h~~~v~~~~~s~~---~~ 204 (313)
...|..+.++|+|..++..|..+. .|-.+. .++ ..++ . .........|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 456888999999999988887664 333321 111 1111 1 111234567889999986 58
Q ss_pred EEEEeeCCCcEEEEECCC
Q 021399 205 HFLTGSLDKSAKLWDART 222 (313)
Q Consensus 205 ~l~s~s~dg~i~iwd~~~ 222 (313)
+|+.=..|+++|+||+..
T Consensus 163 ~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISD 180 (717)
T ss_pred eEEEEecCCEEEEEecCC
Confidence 899999999999999875
No 413
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=87.69 E-value=17 Score=31.23 Aligned_cols=243 Identities=12% Similarity=0.129 Sum_probs=115.1
Q ss_pred EEEEccCCCEEEEee----------CCCCeEEEeCCCCcEEEEec--C-CCCce----EEEEECCCCCeEEEe--eCCCc
Q 021399 15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYR--G-HNGAV----WCCDVSRDSMTLITG--SADQT 75 (313)
Q Consensus 15 ~~~fs~~g~~l~s~s----------~d~~i~iw~~~~~~~~~~~~--~-H~~~V----~~~~~~~~~~~l~s~--s~D~~ 75 (313)
.+..|||++.+++++ -...|.+||.++-.....+. . |+..+ ...+++.|+++++.. +--..
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S 119 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS 119 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence 356799999999854 23458899999987766543 2 22221 234667777755442 34455
Q ss_pred EEEEECCCCeEEEEecCCCCeeEEEe-ecCCeEEEEECCCceeccccceeeeeeeCCCCCCC-ceEEEecCCCCce-EEE
Q 021399 76 AKLWNVETGAQLFTFNFDSPARSVDF-AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG-ESVLILKGPQGRI-NRA 152 (313)
Q Consensus 76 v~vWd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i-~~~ 152 (313)
|-|-|+..++.+..+.. |.+...+ ...+.+.....++.+. .+..+...... .....+.....++ ..-
T Consensus 120 VtVVDl~~~kvv~ei~~--PGC~~iyP~~~~~F~~lC~DGsl~--------~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~ 189 (342)
T PF06433_consen 120 VTVVDLAAKKVVGEIDT--PGCWLIYPSGNRGFSMLCGDGSLL--------TVTLDADGKEAQKSTKVFDPDDDPLFEHP 189 (342)
T ss_dssp EEEEETTTTEEEEEEEG--TSEEEEEEEETTEEEEEETTSCEE--------EEEETSTSSEEEEEEEESSTTTS-B-S--
T ss_pred EEEEECCCCceeeeecC--CCEEEEEecCCCceEEEecCCceE--------EEEECCCCCEeEeeccccCCCCccccccc
Confidence 66777777766554432 2222222 1223343333333221 11111100000 0001111111111 122
Q ss_pred EEccCCCEEEEeeCCCeEEEEECCCCce--eeeccccc------Cc-eeceEEEEECCCCCEEEEeeC--------CC--
Q 021399 153 VWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKET------GH-KKTITSLAKAADGSHFLTGSL--------DK-- 213 (313)
Q Consensus 153 ~~~~~~~~i~t~~~d~~i~lwd~~~~~~--~~~~~~~~------~h-~~~v~~~~~s~~~~~l~s~s~--------dg-- 213 (313)
++...+..++--+.+|.|+--|+..... ........ +- .+.---+++++..+.|..--. |+
T Consensus 190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgt 269 (342)
T PF06433_consen 190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGT 269 (342)
T ss_dssp EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EE
T ss_pred ceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCce
Confidence 3333344455567777777777654331 11111000 00 111223566666655554321 22
Q ss_pred cEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCc
Q 021399 214 SAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK 267 (313)
Q Consensus 214 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (313)
.|-++|+++++.+..+..+.++.+++.+-+..=++.+.......+.++|..+++
T Consensus 270 eVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 270 EVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred EEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 355669999999999987778889998877664443322223345555555543
No 414
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=87.30 E-value=16 Score=30.34 Aligned_cols=206 Identities=16% Similarity=0.128 Sum_probs=103.0
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEe--------------cCCCCceEEEE--ECCCCCeEEEeeCCCc
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY--------------RGHNGAVWCCD--VSRDSMTLITGSADQT 75 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~--------------~~H~~~V~~~~--~~~~~~~l~s~s~D~~ 75 (313)
+|..+..-|+-+.|+.-+ |+.+.++++..-.....- ......+...+ -.+.+...+.....++
T Consensus 37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~ 115 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK 115 (275)
T ss_pred eEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence 377788888777777554 599999988755433211 11122343333 1233444445556668
Q ss_pred EEEEECCCC-----eEEEEecCCCCeeEEEeecCCeEEEEECCCceecccc-ceeeeeeeCCCCCCCceEEEecCCCCce
Q 021399 76 AKLWNVETG-----AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA-IHVKRIARDPADQGGESVLILKGPQGRI 149 (313)
Q Consensus 76 v~vWd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i 149 (313)
+.+|..... +....+.....+..+.|. ++.++++..+.+..++.. .....+... .... ...........++
T Consensus 116 i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~-~~~i~v~~~~~f~~idl~~~~~~~l~~~-~~~~-~~~~~~~~~~~~~ 192 (275)
T PF00780_consen 116 ILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL-GNKICVGTSKGFYLIDLNTGSPSELLDP-SDSS-SSFKSRNSSSKPL 192 (275)
T ss_pred EEEEEEECCcccccceeEEEEcCCCcEEEEEe-CCEEEEEeCCceEEEecCCCCceEEeCc-cCCc-chhhhcccCCCce
Confidence 888887553 344455566777788777 566666655544333222 111111110 0000 0000000011122
Q ss_pred EEEEEccCCCEEEEeeCCCeEEEEECCCCceee--ecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEE
Q 021399 150 NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLK--ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227 (313)
Q Consensus 150 ~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~--~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 227 (313)
..... +++++++ +.++ .-...|. .|+..+ .+. -.....++++. ..+|+.-+. +.|.+|++.++++++
T Consensus 193 ~~~~~-~~~e~Ll-~~~~-~g~fv~~-~G~~~r~~~i~----W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 193 GIFQL-SDNEFLL-CYDN-IGVFVNK-NGEPSRKSTIQ----WSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred EEEEe-CCceEEE-Eecc-eEEEEcC-CCCcCcccEEE----cCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEE
Confidence 22222 2334444 3322 2222333 343332 122 22355666664 356766655 559999999999998
Q ss_pred EEecC
Q 021399 228 TYVTE 232 (313)
Q Consensus 228 ~~~~~ 232 (313)
++..+
T Consensus 262 ~i~~~ 266 (275)
T PF00780_consen 262 TIPLP 266 (275)
T ss_pred EEECC
Confidence 87643
No 415
>PHA02713 hypothetical protein; Provisional
Probab=87.16 E-value=26 Score=32.75 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=15.8
Q ss_pred CCCeEEEeeCC------CcEEEEECCCCe
Q 021399 63 DSMTLITGSAD------QTAKLWNVETGA 85 (313)
Q Consensus 63 ~~~~l~s~s~D------~~v~vWd~~~~~ 85 (313)
++.+++.||.+ ..+..||+.+..
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~ 331 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKI 331 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCe
Confidence 56788888864 346778877654
No 416
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.32 E-value=31 Score=32.84 Aligned_cols=182 Identities=11% Similarity=0.089 Sum_probs=86.4
Q ss_pred CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE-Ee---cCCCCeeEEEeecCCeE
Q 021399 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF-TF---NFDSPARSVDFAVGDKL 107 (313)
Q Consensus 32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~-~~---~~~~~~~~~~~~~~~~~ 107 (313)
-.|+|++. .|..++.+--..+.+-.+.|+.+. .|+.-..||++.++++....... .. .....+..+.+...+..
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa 141 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA 141 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence 34666664 566665555545588889999765 45566899999999975322111 01 12234555555544444
Q ss_pred EEEECCCceecccccee--eeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe--EEEEEC--CCCcee
Q 021399 108 AVITTDPFMELNSAIHV--KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI--VRIWDT--ETGKLL 181 (313)
Q Consensus 108 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~--i~lwd~--~~~~~~ 181 (313)
+....+.+...++.... +....-+..... .....++.|......--.-+-. ..++-. ...+..
T Consensus 142 vlt~~g~v~~i~~~~~~~~~~~~diP~~~~~-----------~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~ 210 (829)
T KOG2280|consen 142 VLTVSGQVILINGVEEPKLRKMPDIPYNELP-----------KSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLH 210 (829)
T ss_pred EEecCCcEEEEcCCCcchhhhCCCCCCccCC-----------CcceeEecCCCcceeEEeechhhhhcccceeccccccc
Confidence 44433333333222111 111110110000 0111111121110000000100 011111 111111
Q ss_pred eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 182 KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 182 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
.+. .. ...+..+..||+..+|+--..+|.|.+-+.+..++.-++.
T Consensus 211 -~~~--~~-~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 211 -ALS--WP-NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred -ccC--CC-CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 111 11 2457778899999999999999999888777666555543
No 417
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=85.58 E-value=19 Score=29.77 Aligned_cols=63 Identities=13% Similarity=0.074 Sum_probs=42.3
Q ss_pred cCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399 20 KDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (313)
Q Consensus 20 ~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~ 85 (313)
..++.|+.|..+| +.+++........... +...|..+..-|+-+.++.= .|+++.++++..-.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvL-sd~~l~~~~L~~l~ 67 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVL-SDGQLYVYDLDSLE 67 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEE-cCCccEEEEchhhc
Confidence 4578999999998 8888883332222222 23349999988876655543 45999999986543
No 418
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=85.51 E-value=19 Score=29.65 Aligned_cols=150 Identities=9% Similarity=0.130 Sum_probs=80.7
Q ss_pred ceeEEEEccCCCEEEEee-CCCCeEEEeCCCCcEEEEe-cCCCCceEEEEECCCCCeEEEeeCCCcEEEEE-CCCCeEE-
Q 021399 12 PLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAKLWN-VETGAQL- 87 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s-~d~~i~iw~~~~~~~~~~~-~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd-~~~~~~~- 87 (313)
.+...+.+++|+.++... .++.-.+|-...+...... .+ ..+...+|++++...+....+...+++. ..++...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~ 102 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEP 102 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCccee
Confidence 577899999999887765 2334455544444433333 33 3678889999977666656666667763 3333222
Q ss_pred EEecC---CCCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCC---CCCceEEEecCCCCceEEEEEccCCCE
Q 021399 88 FTFNF---DSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPAD---QGGESVLILKGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 88 ~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (313)
..... ...+..+.+++++.-+++.. ..- ...+.+-.+.++... .-.............+..+.|.+++..
T Consensus 103 ~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~---~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 103 VEVDWPGLRGRITALRVSPDGTRVAVVVEDGG---GGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred EEecccccCCceEEEEECCCCcEEEEEEecCC---CCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 11111 12678888998765544432 110 011222223332221 001112222233457889999998886
Q ss_pred EEEeeC
Q 021399 161 IISAGE 166 (313)
Q Consensus 161 i~t~~~ 166 (313)
++.+..
T Consensus 180 ~V~~~~ 185 (253)
T PF10647_consen 180 VVLGRS 185 (253)
T ss_pred EEEeCC
Confidence 665543
No 419
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=85.46 E-value=31 Score=32.00 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=49.9
Q ss_pred EEEEccCCCEEEEeeCC-----C-----------CeEEEeCCCCcEEEEecCCCCceEE---------EEECCCCC---e
Q 021399 15 YLKYNKDGDLLFSCAKD-----H-----------TPTVWFADNGERLGTYRGHNGAVWC---------CDVSRDSM---T 66 (313)
Q Consensus 15 ~~~fs~~g~~l~s~s~d-----~-----------~i~iw~~~~~~~~~~~~~H~~~V~~---------~~~~~~~~---~ 66 (313)
..+++|+..+++-+... + .|.--|.++|+....++.....++. +.+..+|+ .
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~ 317 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKL 317 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEE
Confidence 35778777766665522 2 3444588899988887753333332 22334665 7
Q ss_pred EEEeeCCCcEEEEECCCCeEEE
Q 021399 67 LITGSADQTAKLWNVETGAQLF 88 (313)
Q Consensus 67 l~s~s~D~~v~vWd~~~~~~~~ 88 (313)
++.+..+|.+.+.|-++++.+.
T Consensus 318 v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 318 LAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred EEEeCCCceEEEEECCCCceec
Confidence 7889999999999999998764
No 420
>PHA03098 kelch-like protein; Provisional
Probab=83.51 E-value=37 Score=31.40 Aligned_cols=64 Identities=6% Similarity=-0.002 Sum_probs=33.3
Q ss_pred cCCCEEEEeeCCC------CeEEEeCCCCcEEE--EecCCCCceEEEEECCCCCeEEEeeCC-----CcEEEEECCCCe
Q 021399 20 KDGDLLFSCAKDH------TPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETGA 85 (313)
Q Consensus 20 ~~g~~l~s~s~d~------~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~v~vWd~~~~~ 85 (313)
.++..++.||.++ .+..||..+.+-.. .+.........+. -++++++.||.+ ..+..||+.+.+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3456666666543 45567766655321 1111111112222 256777888865 347778877654
No 421
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=81.15 E-value=4.2 Score=21.01 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=20.5
Q ss_pred EEEEeeCCCCeEEEeCCCCcEEEEe
Q 021399 24 LLFSCAKDHTPTVWFADNGERLGTY 48 (313)
Q Consensus 24 ~l~s~s~d~~i~iw~~~~~~~~~~~ 48 (313)
.++.++.++.+...|.++|+.+.++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 6777888999999999998877654
No 422
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=80.84 E-value=36 Score=29.35 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=36.0
Q ss_pred CCEEEEeeCCCeEEEEECCCCceee-ecccccCceeceEEEEECCCCCEEEEeeCCCcEE
Q 021399 158 NRTIISAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 216 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~ 216 (313)
+.+|+..-..+.|...++.....+. ...........+..++..|||...++-..+|+|.
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 4455555556677777765433222 2111223445789999999999888888888763
No 423
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=80.61 E-value=7.2 Score=21.16 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=18.7
Q ss_pred CCCCceEEEEECCCCCeE-EEeeCC--CcEEEE
Q 021399 50 GHNGAVWCCDVSRDSMTL-ITGSAD--QTAKLW 79 (313)
Q Consensus 50 ~H~~~V~~~~~~~~~~~l-~s~s~D--~~v~vW 79 (313)
...+.-....|+|||+.| .++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344556778999999855 455555 666665
No 424
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=80.55 E-value=63 Score=31.98 Aligned_cols=74 Identities=12% Similarity=0.043 Sum_probs=46.2
Q ss_pred ccccceeEEEEccCC--C----EEEEeeCCCCeEEEe-CCCCcEEEEe--cC--CCCceEEEEECCCCCeEEEeeCCCcE
Q 021399 8 GHERPLTYLKYNKDG--D----LLFSCAKDHTPTVWF-ADNGERLGTY--RG--HNGAVWCCDVSRDSMTLITGSADQTA 76 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g--~----~l~s~s~d~~i~iw~-~~~~~~~~~~--~~--H~~~V~~~~~~~~~~~l~s~s~D~~v 76 (313)
.-+..|.|+.++|-| + +++.|..+..+.+-- ..+...+... .+ =..+|.-..+-.|..+|..+..||.+
T Consensus 528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l 607 (1096)
T KOG1897|consen 528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGAL 607 (1096)
T ss_pred eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceE
Confidence 345578899999752 2 688888776666543 3333333222 11 11245555666667899999999998
Q ss_pred EEEEC
Q 021399 77 KLWNV 81 (313)
Q Consensus 77 ~vWd~ 81 (313)
.-+.+
T Consensus 608 ~~fv~ 612 (1096)
T KOG1897|consen 608 LYFVL 612 (1096)
T ss_pred EEEEE
Confidence 86654
No 425
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.45 E-value=14 Score=28.32 Aligned_cols=30 Identities=13% Similarity=0.055 Sum_probs=21.8
Q ss_pred ceEEEEECCCC------CeEEEeeCCCcEEEEECCC
Q 021399 54 AVWCCDVSRDS------MTLITGSADQTAKLWNVET 83 (313)
Q Consensus 54 ~V~~~~~~~~~------~~l~s~s~D~~v~vWd~~~ 83 (313)
.|.+++|||.| -+|+.-..++.+.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 57788888854 2567777888888887653
No 426
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=80.29 E-value=42 Score=29.81 Aligned_cols=124 Identities=18% Similarity=0.121 Sum_probs=61.5
Q ss_pred eEEEEECCCCCeEEE-eeCC----CcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEE-EEECCCceeccccceeeeee
Q 021399 55 VWCCDVSRDSMTLIT-GSAD----QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLA-VITTDPFMELNSAIHVKRIA 128 (313)
Q Consensus 55 V~~~~~~~~~~~l~s-~s~D----~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 128 (313)
+....++|++++++- -+.. .++++.|+.+++.+...-.......+.|.++++.. ....+.............+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 346788999997653 2333 44999999999765432111112237788775444 33333211100000111111
Q ss_pred eCCCC-CCCceEEEecCCCCc--eEEEEEccCCCEEEEee---CC-CeEEEEECCCC
Q 021399 129 RDPAD-QGGESVLILKGPQGR--INRAVWGPLNRTIISAG---ED-AIVRIWDTETG 178 (313)
Q Consensus 129 ~~~~~-~~~~~~~~~~~~~~~--i~~~~~~~~~~~i~t~~---~d-~~i~lwd~~~~ 178 (313)
..... ...+-.+.++..... ...+..++++++++... .+ ..+.+.|....
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 11111 112223444443333 56777889998876432 23 45888888764
No 427
>PHA03098 kelch-like protein; Provisional
Probab=79.97 E-value=51 Score=30.54 Aligned_cols=65 Identities=14% Similarity=0.147 Sum_probs=32.7
Q ss_pred CCCEEEEeeCC------CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC--------cEEEEECCC
Q 021399 157 LNRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK--------SAKLWDART 222 (313)
Q Consensus 157 ~~~~i~t~~~d------~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg--------~i~iwd~~~ 222 (313)
.+..++.||.+ ..+..||+.+.+ ...............++ ..++..++.|+.++ .+..||.++
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~ 465 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNK-WSKGSPLPISHYGGCAI--YHDGKIYVIGGISYIDNIKVYNIVESYNPVT 465 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCe-eeecCCCCccccCceEE--EECCEEEEECCccCCCCCcccceEEEecCCC
Confidence 45566667632 457888987643 22221111111111122 23566667776432 377888877
Q ss_pred Cc
Q 021399 223 LE 224 (313)
Q Consensus 223 ~~ 224 (313)
.+
T Consensus 466 ~~ 467 (534)
T PHA03098 466 NK 467 (534)
T ss_pred Cc
Confidence 54
No 428
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=79.97 E-value=7.9 Score=21.22 Aligned_cols=31 Identities=23% Similarity=0.289 Sum_probs=21.3
Q ss_pred CCCCeE-EEeeCCCcEEEEECCCCeEEEEecC
Q 021399 62 RDSMTL-ITGSADQTAKLWNVETGAQLFTFNF 92 (313)
Q Consensus 62 ~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~ 92 (313)
|+++.+ ++.-.+++|.++|+.+++.+.....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 456644 4455688999999988876655543
No 429
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=79.80 E-value=63 Score=31.55 Aligned_cols=115 Identities=20% Similarity=0.184 Sum_probs=65.6
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecccccCcee-----ceEEEEEC----------------CCCCEEEEeeCCCcEE
Q 021399 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK-----TITSLAKA----------------ADGSHFLTGSLDKSAK 216 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~-----~v~~~~~s----------------~~~~~l~s~s~dg~i~ 216 (313)
+..+..++.++.|.-.|..+++.+=++........ ..+.+++. ..+..|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 34566677778888888888776433322111000 01122221 1345788899999999
Q ss_pred EEECCCCcEEEEEecCCcee-------------EEEecc--CCCEEEEccc-cc-------CceeEeeccCCCceeeee
Q 021399 217 LWDARTLELIKTYVTERPVN-------------AVTMSP--LLDHVVLGGG-QD-------ASAVTTTDHRAGKFEAKF 272 (313)
Q Consensus 217 iwd~~~~~~~~~~~~~~~~~-------------~~~~~p--~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~ 272 (313)
-.|.+|++.+..+..+..+. ...-.| .++.+++++. .| .+.+..+|.++|+..+++
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 99999999887654322221 111222 1345555532 11 356788888888875544
No 430
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=79.33 E-value=0.7 Score=22.19 Aligned_cols=9 Identities=44% Similarity=1.220 Sum_probs=7.1
Q ss_pred EECCCCCee
Q 021399 295 AFNPDGKRY 303 (313)
Q Consensus 295 ~fspdgk~~ 303 (313)
.||||||.+
T Consensus 7 ~FSp~Grl~ 15 (23)
T PF10584_consen 7 TFSPDGRLF 15 (23)
T ss_dssp SBBTTSSBH
T ss_pred eECCCCeEE
Confidence 489999874
No 431
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.08 E-value=22 Score=25.95 Aligned_cols=101 Identities=19% Similarity=0.176 Sum_probs=57.1
Q ss_pred CCEEEEeeCCCeEEEEECCCCc--------eeeecccccCceeceEEEEECC-----CCCEEEEeeCCCcEEEEECCCCc
Q 021399 158 NRTIISAGEDAIVRIWDTETGK--------LLKESDKETGHKKTITSLAKAA-----DGSHFLTGSLDKSAKLWDARTLE 224 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~~~--------~~~~~~~~~~h~~~v~~~~~s~-----~~~~l~s~s~dg~i~iwd~~~~~ 224 (313)
.+-++.++..++|.|.+..... .++.+ .-+..|++++-.+ +.+.|+.|+. ..+..||++...
T Consensus 10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L----Nin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~~N~ 84 (136)
T PF14781_consen 10 HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL----NINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVENNS 84 (136)
T ss_pred ceeEEEEecCCEEEEECCCccccccccccCceeEE----ECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcccCc
Confidence 3457778888899999876432 12221 1345677776433 3456666665 568899998765
Q ss_pred EEEEEecCCceeEEEeccC---CCEEEEcccccCceeEeeccCC
Q 021399 225 LIKTYVTERPVNAVTMSPL---LDHVVLGGGQDASAVTTTDHRA 265 (313)
Q Consensus 225 ~~~~~~~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~ 265 (313)
-+.-...+.-++++.+-.. ...+++.|| .+.+..+|...
T Consensus 85 d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG--ncsi~Gfd~~G 126 (136)
T PF14781_consen 85 DLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG--NCSIQGFDYEG 126 (136)
T ss_pred hhhhhhCccceeEEEEEecCCCCCcEEEECc--eEEEEEeCCCC
Confidence 4433223445677666332 233444443 24455566443
No 432
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=78.37 E-value=46 Score=29.14 Aligned_cols=99 Identities=11% Similarity=0.083 Sum_probs=51.0
Q ss_pred ceEEEEEccCCCEEEEeeCCCeEEEEECCC-------Cceee-ecccc-cCceeceEEEEECCCCCEEEEeeCC------
Q 021399 148 RINRAVWGPLNRTIISAGEDAIVRIWDTET-------GKLLK-ESDKE-TGHKKTITSLAKAADGSHFLTGSLD------ 212 (313)
Q Consensus 148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~-------~~~~~-~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~d------ 212 (313)
....+++.+++ .+++ ......++.|... .+.+. .+... ..+......+++.|||...++-+..
T Consensus 73 ~p~Gi~~~~~G-lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~ 150 (367)
T TIGR02604 73 MVTGLAVAVGG-VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVT 150 (367)
T ss_pred CccceeEecCC-EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceec
Confidence 34567777777 4443 4443333445431 11111 12111 0123457789999999876655521
Q ss_pred -------------CcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEE
Q 021399 213 -------------KSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVL 249 (313)
Q Consensus 213 -------------g~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~ 249 (313)
|.|.-+|.++++. ..+. .-+....++|+|.++..++
T Consensus 151 ~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 151 RPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred cCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEE
Confidence 3455555554443 2222 2234567899998765443
No 433
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=77.75 E-value=7.5 Score=26.18 Aligned_cols=44 Identities=20% Similarity=0.095 Sum_probs=29.5
Q ss_pred EeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcc
Q 021399 208 TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 208 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 251 (313)
.+..+|.+.-||+++++...-...-.-.+.|+++|+++.++++-
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe
Confidence 34456778899999987533333334678999999999998873
No 434
>PRK13684 Ycf48-like protein; Provisional
Probab=76.51 E-value=50 Score=28.54 Aligned_cols=158 Identities=8% Similarity=0.046 Sum_probs=0.0
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~ 89 (313)
...+..+.+.|++.+++.+......+.++-....-......-...+.++.+.++++.++.+.. |.+++=+.+.+..=..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~-G~~~~~s~d~G~sW~~ 250 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARG-GQIRFNDPDDLESWSK 250 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecC-CEEEEccCCCCCcccc
Q ss_pred ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe
Q 021399 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (313)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~ 169 (313)
.......... .+..+.+.|.+. ++.++.+|.
T Consensus 251 ~~~~~~~~~~------------------------------------------------~l~~v~~~~~~~-~~~~G~~G~ 281 (334)
T PRK13684 251 PIIPEITNGY------------------------------------------------GYLDLAYRTPGE-IWAGGGNGT 281 (334)
T ss_pred ccCCcccccc------------------------------------------------ceeeEEEcCCCC-EEEEcCCCe
Q ss_pred EEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEE
Q 021399 170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (313)
Q Consensus 170 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd 219 (313)
+. .....++..+.+.....-......+.+..++..+++|.. |.|.-|+
T Consensus 282 v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-G~il~~~ 329 (334)
T PRK13684 282 LL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQR-GVLLRYV 329 (334)
T ss_pred EE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCC-ceEEEec
No 435
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=76.48 E-value=20 Score=29.11 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=41.7
Q ss_pred EEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEEC
Q 021399 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS 61 (313)
Q Consensus 15 ~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~ 61 (313)
.++.+.+|++.+++=..++|...|..+|+.+.+++--...|+|++|-
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEec
Confidence 35557789999988889999999999999999999889999999995
No 436
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=75.78 E-value=34 Score=26.26 Aligned_cols=31 Identities=10% Similarity=0.307 Sum_probs=25.0
Q ss_pred CceEEEEEccCC------CEEEEeeCCCeEEEEECCC
Q 021399 147 GRINRAVWGPLN------RTIISAGEDAIVRIWDTET 177 (313)
Q Consensus 147 ~~i~~~~~~~~~------~~i~t~~~d~~i~lwd~~~ 177 (313)
+.+..+.|+|.| ..|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 367889999865 4788889999999998653
No 437
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=75.36 E-value=14 Score=29.41 Aligned_cols=47 Identities=26% Similarity=0.174 Sum_probs=35.6
Q ss_pred CEEEEeeCCCCeEEEeCC--CCcEEEEecCCCCceEEEEECCCCCeEEEe
Q 021399 23 DLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVSRDSMTLITG 70 (313)
Q Consensus 23 ~~l~s~s~d~~i~iw~~~--~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~ 70 (313)
+.|+.+...+.|.+|++. ..+.+.+|..= +.|..+.++..|++++|=
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTl 77 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTL 77 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEE
Confidence 455555667889999988 33456677653 789999999999999983
No 438
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=75.21 E-value=40 Score=26.87 Aligned_cols=32 Identities=25% Similarity=0.169 Sum_probs=21.8
Q ss_pred EEEEccCCCEEEEeeC--CCCeEEEeCCCCcEEEE
Q 021399 15 YLKYNKDGDLLFSCAK--DHTPTVWFADNGERLGT 47 (313)
Q Consensus 15 ~~~fs~~g~~l~s~s~--d~~i~iw~~~~~~~~~~ 47 (313)
.+.+. +|+.+.|.+. ...|++||+.+++.+..
T Consensus 50 GL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s 83 (262)
T COG3823 50 GLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFS 83 (262)
T ss_pred ceeee-CCEEEEeccccccceeEEEeccCceEEEE
Confidence 34443 5677887775 45688999998876543
No 439
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.78 E-value=28 Score=34.90 Aligned_cols=62 Identities=6% Similarity=0.160 Sum_probs=42.7
Q ss_pred ceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccc-cCceeceEEEEECCCCCEEEEee
Q 021399 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-TGHKKTITSLAKAADGSHFLTGS 210 (313)
Q Consensus 148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s 210 (313)
..++++|+|.|..++.|-..|++.-|...-. ..+++... .-....|.+|+|-....+++.-+
T Consensus 200 ~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 200 SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 4578899999999999999999988875422 11222111 11246799999988877766543
No 440
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=72.38 E-value=9.2 Score=19.17 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=17.3
Q ss_pred eeEEEEccCCCEEEEeeCCCCeEEE
Q 021399 13 LTYLKYNKDGDLLFSCAKDHTPTVW 37 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~d~~i~iw 37 (313)
+..++.+++|+.+++=+..+.|+++
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4667778888777776666666553
No 441
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=71.58 E-value=14 Score=20.01 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=22.9
Q ss_pred EEEEeeCCCcEEEEECCCCcEEEEEecC
Q 021399 205 HFLTGSLDKSAKLWDARTLELIKTYVTE 232 (313)
Q Consensus 205 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 232 (313)
.+..++.||.+.-.|.++|+.+-.+...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 3566689999999999999998877643
No 442
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=71.43 E-value=61 Score=27.26 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=50.9
Q ss_pred CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee------CCCcEEEEECCCCcEEEEEec------CCc
Q 021399 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS------LDKSAKLWDARTLELIKTYVT------ERP 234 (313)
Q Consensus 167 d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~------~~~ 234 (313)
-..|++||..+.+ ...+. .+-.+.|+++.|..+...++.|. ....+-.||+.+..- ..+.. +.+
T Consensus 15 C~~lC~yd~~~~q-W~~~g--~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w-~~~~~~~s~~ipgp 90 (281)
T PF12768_consen 15 CPGLCLYDTDNSQ-WSSPG--NGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW-SSLGGGSSNSIPGP 90 (281)
T ss_pred CCEEEEEECCCCE-eecCC--CCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee-eecCCcccccCCCc
Confidence 4569999987643 33332 24678899999987777777765 345677899876542 22222 246
Q ss_pred eeEEEe-ccCCCEEEEccc
Q 021399 235 VNAVTM-SPLLDHVVLGGG 252 (313)
Q Consensus 235 ~~~~~~-~p~~~~~~~~~~ 252 (313)
+..+.+ ..+...+.++|.
T Consensus 91 v~a~~~~~~d~~~~~~aG~ 109 (281)
T PF12768_consen 91 VTALTFISNDGSNFWVAGR 109 (281)
T ss_pred EEEEEeeccCCceEEEece
Confidence 666665 334555665554
No 443
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=70.08 E-value=82 Score=28.22 Aligned_cols=155 Identities=12% Similarity=0.051 Sum_probs=0.0
Q ss_pred CCCCCeEEEeeCCCcEEEEECCCCe-----EEEEecCCCCeeEEEeec-----CCeEEEEECCCceeccccceeeeeeeC
Q 021399 61 SRDSMTLITGSADQTAKLWNVETGA-----QLFTFNFDSPARSVDFAV-----GDKLAVITTDPFMELNSAIHVKRIARD 130 (313)
Q Consensus 61 ~~~~~~l~s~s~D~~v~vWd~~~~~-----~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (313)
..+...++.||..|.++|+++.... .+.......|+..+.... ....+++.......+............
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Q ss_pred CCCCCCceEEEecCCCCceEEEEEccCC----CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEE
Q 021399 131 PADQGGESVLILKGPQGRINRAVWGPLN----RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF 206 (313)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l 206 (313)
-....-..+....-.....+-+.-.-.+ .+|..-+-||.+.+++-+.-...+.+. .---.-.+++.+..+.|
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp----~~llPgPl~Y~~~tDsf 189 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP----DFLLPGPLCYCPRTDSF 189 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC----CCCCCcCeEEeecCCEE
Q ss_pred EEeeCCCcEEEEE
Q 021399 207 LTGSLDKSAKLWD 219 (313)
Q Consensus 207 ~s~s~dg~i~iwd 219 (313)
++++.+..+.-|.
T Consensus 190 vt~sss~~l~~Yk 202 (418)
T PF14727_consen 190 VTASSSWTLECYK 202 (418)
T ss_pred EEecCceeEEEec
No 444
>PHA02790 Kelch-like protein; Provisional
Probab=69.94 E-value=89 Score=28.58 Aligned_cols=60 Identities=3% Similarity=-0.070 Sum_probs=28.6
Q ss_pred CCCEEEEeeCCC-----CeEEEeCCCCcEEE--EecCCCCceEEEEECCCCCeEEEeeCCC--cEEEEECC
Q 021399 21 DGDLLFSCAKDH-----TPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVE 82 (313)
Q Consensus 21 ~g~~l~s~s~d~-----~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D~--~v~vWd~~ 82 (313)
++..++.||.++ .+..||..+.+-.. .+.........+. -++.+.+.||.++ ++..||+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~ 339 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHG 339 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECC
Confidence 455666676543 34456666654321 1111111111122 3567777777643 45556544
No 445
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.81 E-value=85 Score=28.30 Aligned_cols=98 Identities=11% Similarity=0.064 Sum_probs=58.2
Q ss_pred ceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-----CCceeEEEeccCCCEEEEcccccCceeEeeccC
Q 021399 190 HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR 264 (313)
Q Consensus 190 h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 264 (313)
.++.|.++.||+|.+.||.--.|.+|.+++....+....+.+ ...+...+|+...+..++.. .+..++.-+.
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~--~G~e~y~v~p- 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSSTEIAFITD--QGIEFYQVLP- 141 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCeeEEEEec--CCeEEEEEch-
Confidence 456899999999999999999999999999844333222211 22356667766544444321 1222222221
Q ss_pred CCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399 265 AGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302 (313)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~ 302 (313)
..+.+...+.|+..|+-..|.|+-+.
T Consensus 142 ------------ekrslRlVks~~~nvnWy~yc~et~v 167 (657)
T KOG2377|consen 142 ------------EKRSLRLVKSHNLNVNWYMYCPETAV 167 (657)
T ss_pred ------------hhhhhhhhhhcccCccEEEEccccce
Confidence 11122234457777877778777544
No 446
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.99 E-value=1e+02 Score=28.42 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=22.4
Q ss_pred eceEEEEECCCCCEEEEeeCCCcEEEE
Q 021399 192 KTITSLAKAADGSHFLTGSLDKSAKLW 218 (313)
Q Consensus 192 ~~v~~~~~s~~~~~l~s~s~dg~i~iw 218 (313)
-.|..+..++.|+.++-.+.+|-+.++
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEE
Confidence 457778889999999999999987665
No 447
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=67.91 E-value=25 Score=33.55 Aligned_cols=79 Identities=10% Similarity=0.047 Sum_probs=54.8
Q ss_pred cccccccccceeEEEEc--cCCCEEEEeeCCCCeEEEeCCCC--cEEE-EecCCCCceEEEEECCCC-----C-eEEEee
Q 021399 3 PILMKGHERPLTYLKYN--KDGDLLFSCAKDHTPTVWFADNG--ERLG-TYRGHNGAVWCCDVSRDS-----M-TLITGS 71 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs--~~g~~l~s~s~d~~i~iw~~~~~--~~~~-~~~~H~~~V~~~~~~~~~-----~-~l~s~s 71 (313)
|.....-..+.+.|+++ ....+||.++....|.|+-.... +... .-..|...|.+++|-++. . .++.++
T Consensus 156 P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~d 235 (717)
T PF08728_consen 156 PFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATD 235 (717)
T ss_pred CCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEe
Confidence 44444445578999998 88889999988899999865542 1111 111356678899986532 2 677788
Q ss_pred CCCcEEEEEC
Q 021399 72 ADQTAKLWNV 81 (313)
Q Consensus 72 ~D~~v~vWd~ 81 (313)
-.|.+-+|++
T Consensus 236 I~G~v~~~~I 245 (717)
T PF08728_consen 236 ISGEVWTFKI 245 (717)
T ss_pred ccCcEEEEEE
Confidence 9999988877
No 448
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=66.88 E-value=34 Score=29.04 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=47.7
Q ss_pred eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEE-----EEECCCCCeEEEeeCCCcEEEEEC
Q 021399 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWC-----CDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~-----~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
++++...++|.+|+|.-.-..|.+.+..+++.+..+.|..+.=+. .++-.+-+.+-.+..+++|.++|=
T Consensus 146 iNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 567888899999999988889999999999999999776221111 222223333334456777778774
No 449
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=66.79 E-value=65 Score=25.77 Aligned_cols=130 Identities=16% Similarity=0.190 Sum_probs=62.5
Q ss_pred eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe---cCC---ceeE
Q 021399 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV---TER---PVNA 237 (313)
Q Consensus 164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~---~~~~ 237 (313)
.-.++.-..+|..+-+++.++. .++.-+.++ .|+..|+.+.-..+++.=|.++.....++. ... .+|.
T Consensus 107 Tw~egvaf~~d~~t~~~lg~~~----y~GeGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNE 180 (262)
T COG3823 107 TWKEGVAFKYDADTLEELGRFS----YEGEGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNE 180 (262)
T ss_pred EeccceeEEEChHHhhhhcccc----cCCcceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccc
Confidence 3456777788887766666553 344455555 345556655555567766777765554443 122 2444
Q ss_pred EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehh-hhhhhccccccccceeEEEECCCCCee
Q 021399 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKI-LQEEIGGVKGHFGPINALAFNPDGKRY 303 (313)
Q Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~~~fspdgk~~ 303 (313)
+.|-. ..+++-.-.+.. +..-+...|+....+ |.. -.+.+..-..|....+.||+-|++.+|
T Consensus 181 LE~Vd--G~lyANVw~t~~-I~rI~p~sGrV~~wi-dlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~ 243 (262)
T COG3823 181 LEWVD--GELYANVWQTTR-IARIDPDSGRVVAWI-DLSGLLKELNLDKSNDNVLNGIAHDPQQDRF 243 (262)
T ss_pred eeeec--cEEEEeeeeecc-eEEEcCCCCcEEEEE-EccCCchhcCccccccccccceeecCcCCeE
Confidence 55432 222222111111 111223333322111 211 111122223455677899999997554
No 450
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=64.89 E-value=53 Score=24.08 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=48.5
Q ss_pred eEEEEccCCCEEEEeeCCCCeEEEeCCCCc--------EEEEecCCCCceEEEE---ECCC--CCeEEEeeCCCcEEEEE
Q 021399 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGE--------RLGTYRGHNGAVWCCD---VSRD--SMTLITGSADQTAKLWN 80 (313)
Q Consensus 14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--------~~~~~~~H~~~V~~~~---~~~~--~~~l~s~s~D~~v~vWd 80 (313)
..-+|+...+-|+.+...++|.|++..... .+..+. -...|.+++ +.|+ ...|+-|+. ..+..||
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 456788888899999999999999765332 222332 245677665 4332 345666554 4678899
Q ss_pred CCCCeEEEEec
Q 021399 81 VETGAQLFTFN 91 (313)
Q Consensus 81 ~~~~~~~~~~~ 91 (313)
+.....++...
T Consensus 80 V~~N~d~Fyke 90 (136)
T PF14781_consen 80 VENNSDLFYKE 90 (136)
T ss_pred cccCchhhhhh
Confidence 88766554333
No 451
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=63.24 E-value=14 Score=33.48 Aligned_cols=61 Identities=10% Similarity=0.109 Sum_probs=44.7
Q ss_pred CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
..-+++.+|..|.||+||--..+....+.+-..+|-.+....+|+.++... ..++-+-|+.
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 345999999999999998665555556777778899999999998554322 3466666653
No 452
>PRK13613 lipoprotein LpqB; Provisional
Probab=62.28 E-value=1.4e+02 Score=28.22 Aligned_cols=103 Identities=12% Similarity=0.035 Sum_probs=52.8
Q ss_pred ceEEEEECCCCCEEEEeeCCCc-EEEEECCCCcE----EEEEecCCceeEEEeccCCCEEEEcccccCc--eeEeeccCC
Q 021399 193 TITSLAKAADGSHFLTGSLDKS-AKLWDARTLEL----IKTYVTERPVNAVTMSPLLDHVVLGGGQDAS--AVTTTDHRA 265 (313)
Q Consensus 193 ~v~~~~~s~~~~~l~s~s~dg~-i~iwd~~~~~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~ 265 (313)
.+.+.+.++++..+|..+.++. +.+..+..+.. ............-+|.+.+ .+.+.-++... .+..... .
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtvd~~~~~~~vl~v~~~-~ 441 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRG-DLWVVDRDPADPRLLWLLQG-D 441 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCC-CEEEecCCCCCceEEEEEcC-C
Confidence 6778899999998888776663 44444433222 1122222234444555554 33333221111 1222211 1
Q ss_pred CceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399 266 GKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~ 307 (313)
+... . .+. -.+.+ .+|..+..|+||-+.|++.
T Consensus 442 G~~~-~-V~~------~~l~g--~~I~~lrvSrDG~RvAvv~ 473 (599)
T PRK13613 442 GEPV-E-VRT------PELDG--HRVVAVRVARDGVRVALIV 473 (599)
T ss_pred CcEE-E-eec------cccCC--CEeEEEEECCCccEEEEEE
Confidence 1110 0 110 01222 3899999999999999987
No 453
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=61.99 E-value=1.2e+02 Score=27.09 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=38.5
Q ss_pred ceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEE
Q 021399 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218 (313)
Q Consensus 148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iw 218 (313)
.+..+.+.+++.. +.++..|.+.... ..++..........-......+.|.++++-+++ +.+|.|.-|
T Consensus 329 ~l~~v~~~~d~~~-~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~ 396 (398)
T PLN00033 329 GILDVGYRSKKEA-WAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY 396 (398)
T ss_pred ceEEEEEcCCCcE-EEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence 3566667666554 4456677665543 445554443322223456788888777665554 456766544
No 454
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.99 E-value=2e+02 Score=29.32 Aligned_cols=26 Identities=38% Similarity=0.655 Sum_probs=23.8
Q ss_pred CCCCCEEEEeeCCCcEEEEECCCCcE
Q 021399 200 AADGSHFLTGSLDKSAKLWDARTLEL 225 (313)
Q Consensus 200 s~~~~~l~s~s~dg~i~iwd~~~~~~ 225 (313)
++++..++++-.||.+..||...+..
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 78899999999999999999988755
No 455
>PHA02790 Kelch-like protein; Provisional
Probab=59.33 E-value=1.4e+02 Score=27.25 Aligned_cols=64 Identities=8% Similarity=0.133 Sum_probs=34.4
Q ss_pred cCCCEEEEeeCC--CCeEEEeCCCCcEEE--EecCCCCceEEEEECCCCCeEEEeeCCC---cEEEEECCCCe
Q 021399 20 KDGDLLFSCAKD--HTPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSADQ---TAKLWNVETGA 85 (313)
Q Consensus 20 ~~g~~l~s~s~d--~~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D~---~v~vWd~~~~~ 85 (313)
.+|+..+.||.+ ..+..||..+.+-.. .+.........+. -+|++.+.||.++ .+..||+++.+
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~ 387 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQ 387 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCE
Confidence 467777777754 346677765553221 1111111111122 3577888888653 47788887654
No 456
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=57.15 E-value=1.9 Score=38.43 Aligned_cols=133 Identities=15% Similarity=0.188 Sum_probs=79.6
Q ss_pred EEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEE-eeCCCcEEEEECCCCcEEEEE
Q 021399 151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLELIKTY 229 (313)
Q Consensus 151 ~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~ 229 (313)
...|.|.+.-++.++.+..+..||-. ++.+.+.. ......+++|..+++.++. +-..+.+.+||+.+..- .++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n----~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL 112 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKA-GQVILELN----PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL 112 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhh-cceecccC----CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH
Confidence 44567777678888889999999954 33333322 3445667788888886544 44578899999876321 111
Q ss_pred --ecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399 230 --VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY 303 (313)
Q Consensus 230 --~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~ 303 (313)
.....-.-+.|++...-.+++- ... ++.+++.-+.+.+.++.-|..+++.+++.++++.+
T Consensus 113 E~gg~~s~sll~wsKg~~el~ig~--~~g------------n~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSKGTPELVIGN--NAG------------NIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred hccCcchHHHHhhccCCccccccc--ccc------------ceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence 1111222256777666555541 111 23344433334444443489999999999998764
No 457
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=56.30 E-value=23 Score=19.32 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=15.5
Q ss_pred CCEEEEeeCCCcEEEEECCC
Q 021399 203 GSHFLTGSLDKSAKLWDART 222 (313)
Q Consensus 203 ~~~l~s~s~dg~i~iwd~~~ 222 (313)
+..++.++.||.+.-+|.++
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 56788999999999999864
No 458
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=56.01 E-value=1.3e+02 Score=27.22 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=41.1
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 226 (313)
+-+++-...|++.++-..+.+++.... --..+.-+++||+++++++-. .|.++++.+++..+.
T Consensus 329 kgF~~l~~~G~L~~f~st~~~~lL~~~----~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~Pe 391 (733)
T COG4590 329 KGFYSLYRNGTLQSFYSTSEKLLLFER----AYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRNPE 391 (733)
T ss_pred ceEEEEcCCCceeeeecccCcceehhh----hhcCcceeeeCcccchheeec-CCceEEEEecCCCCC
Confidence 456777788888887765544432111 123456678999999988754 467898887765443
No 459
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=55.90 E-value=1.5e+02 Score=26.42 Aligned_cols=139 Identities=12% Similarity=0.118 Sum_probs=71.1
Q ss_pred eEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc----
Q 021399 149 INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE---- 224 (313)
Q Consensus 149 i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~---- 224 (313)
...+...+++..++.+.....++-||--.. ....... .-...+.++.+.+++..++.+ .+|.+ +|....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~-~W~~~~~--~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP-YWQPHNR--ASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCc-ceEEecC--CCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 344556677777776665555555664221 0111111 224568889999998876655 55665 34444443
Q ss_pred -EEEEEec---CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCC
Q 021399 225 -LIKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300 (313)
Q Consensus 225 -~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg 300 (313)
.+..... ...+..+.+.+++...++ | ..+..+...|. . +-|.... .-..-.+..+++.|.+++
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G-~~G~v~~s~D~-G-----~tW~~~~-----~~~~~~~~ly~v~f~~~~ 382 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAA-G-GSGILLRSTDG-G-----KSWKRDK-----GADNIAANLYSVKFFDDK 382 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEE-E-CCCcEEEeCCC-C-----cceeEcc-----ccCCCCcceeEEEEcCCC
Confidence 2232221 124677888776554433 3 22322222221 1 1122110 001124578899998888
Q ss_pred CeeEE
Q 021399 301 KRYGF 305 (313)
Q Consensus 301 k~~~~ 305 (313)
+.++.
T Consensus 383 ~g~~~ 387 (398)
T PLN00033 383 KGFVL 387 (398)
T ss_pred ceEEE
Confidence 87654
No 460
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.21 E-value=2.1e+02 Score=29.62 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=29.5
Q ss_pred CceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399 189 GHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (313)
Q Consensus 189 ~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (313)
.+...|..++.....+.+.+-+..|+|..||+..
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 4567889999888888899999999999999876
No 461
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=55.14 E-value=1.1e+02 Score=24.54 Aligned_cols=42 Identities=10% Similarity=0.200 Sum_probs=25.4
Q ss_pred eEEEeeCCCcEEEEECCC--CeEEEEecCCCCeeEEEeecCCeEE
Q 021399 66 TLITGSADQTAKLWNVET--GAQLFTFNFDSPARSVDFAVGDKLA 108 (313)
Q Consensus 66 ~l~s~s~D~~v~vWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (313)
+|+ +.....|.+|++.+ .+....+..-+.+..+.++..+..+
T Consensus 31 Lfv-a~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYl 74 (215)
T PF14761_consen 31 LFV-AASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYL 74 (215)
T ss_pred EEE-EcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceE
Confidence 444 35557799999873 3445566555666666666533333
No 462
>PRK13615 lipoprotein LpqB; Provisional
Probab=54.32 E-value=1.7e+02 Score=27.46 Aligned_cols=100 Identities=15% Similarity=0.010 Sum_probs=51.2
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeee
Q 021399 194 ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF 273 (313)
Q Consensus 194 v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (313)
..+.+.++++..++....++.+.++.... ....+.....+..=+|.+++ .+.+....+...+... ...+... .
T Consensus 336 ~~s~avS~dg~~~A~v~~~~~l~vg~~~~--~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~-~~~G~~~--~- 408 (557)
T PRK13615 336 ADAATLSADGRQAAVRNASGVWSVGDGDR--DAVLLDTRPGLVAPSLDAQG-YVWSTPASDPRGLVAW-GPDGVGH--P- 408 (557)
T ss_pred cccceEcCCCceEEEEcCCceEEEecCCC--cceeeccCCccccCcCcCCC-CEEEEeCCCceEEEEe-cCCCceE--E-
Confidence 36788999999988888788777776552 11212112223333444443 2222211111111110 0111110 0
Q ss_pred ehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399 274 DKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 274 ~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~ 307 (313)
+..--.-.++|..+..|+||-+.|.+.
T Consensus 409 -------v~v~~~~~~~I~~lrvSrDG~R~Avi~ 435 (557)
T PRK13615 409 -------VAVSWTATGRVVSLEVARDGARVLVQL 435 (557)
T ss_pred -------eeccccCCCeeEEEEeCCCccEEEEEE
Confidence 000001246899999999999999986
No 463
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=53.88 E-value=1.7e+02 Score=26.55 Aligned_cols=58 Identities=12% Similarity=0.030 Sum_probs=39.8
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc--EEEEec-----CCCCceEEEEECCC
Q 021399 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYR-----GHNGAVWCCDVSRD 63 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~-----~H~~~V~~~~~~~~ 63 (313)
+...-...+.++|.|||.+|++--..|.|++++-.++. .+..+. .-++....++++|+
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCC
Confidence 44445667899999999888876656999998755443 222121 13567889999986
No 464
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=52.62 E-value=1.5e+02 Score=25.32 Aligned_cols=144 Identities=14% Similarity=0.158 Sum_probs=71.7
Q ss_pred cCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCC--ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEE-
Q 021399 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETG--KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD- 219 (313)
Q Consensus 143 ~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd- 219 (313)
....+.+..+.-.+++++++++.......-||.-.. .+..+ .-...|.++.|.|++...+.+ ..|.|+.=+
T Consensus 141 ~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r-----~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~ 214 (302)
T PF14870_consen 141 SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR-----NSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDD 214 (302)
T ss_dssp -S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE-------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-
T ss_pred cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc-----CccceehhceecCCCCEEEEe-CCcEEEEccC
Confidence 334466778888899998888887777788986432 22211 124678999999998765544 888888887
Q ss_pred CCCCcEEEE----E-ecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEE
Q 021399 220 ARTLELIKT----Y-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 294 (313)
Q Consensus 220 ~~~~~~~~~----~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 294 (313)
....+.... + .....+..+++.+.... .++|+. +..+++.|.-. -|.... ....-.+..+.|
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~-wa~gg~-G~l~~S~DgGk------tW~~~~-----~~~~~~~n~~~i 281 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPNEI-WAVGGS-GTLLVSTDGGK------TWQKDR-----VGENVPSNLYRI 281 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS-E-EEEEST-T-EEEESSTTS------S-EE-G-----GGTTSSS---EE
T ss_pred CCCccccccccCCcccCceeeEEEEecCCCCE-EEEeCC-ccEEEeCCCCc------cceECc-----cccCCCCceEEE
Confidence 222222222 1 01123677899887554 444443 34455555311 132111 011225678899
Q ss_pred EECCCCCeeEE
Q 021399 295 AFNPDGKRYGF 305 (313)
Q Consensus 295 ~fspdgk~~~~ 305 (313)
.|.++.|.|++
T Consensus 282 ~f~~~~~gf~l 292 (302)
T PF14870_consen 282 VFVNPDKGFVL 292 (302)
T ss_dssp EEEETTEEEEE
T ss_pred EEcCCCceEEE
Confidence 99877776654
No 465
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=52.32 E-value=31 Score=17.37 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=19.0
Q ss_pred ceEEEEECCCCCEEEEeeCCCcEEEEE
Q 021399 193 TITSLAKAADGSHFLTGSLDKSAKLWD 219 (313)
Q Consensus 193 ~v~~~~~s~~~~~l~s~s~dg~i~iwd 219 (313)
.|.+++.++ ++++.+.+-+.+|+|.
T Consensus 3 ~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC--CEEEEEeCCCeEEecC
Confidence 567777653 5888888888999873
No 466
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=52.28 E-value=1.5e+02 Score=25.32 Aligned_cols=68 Identities=16% Similarity=0.262 Sum_probs=46.4
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC------CCCEEEEeeCCCcEEEEECCCCcEEEEEec
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA------DGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~------~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 231 (313)
+.|-.-|.|-++|+. +.+++++.. .+.-...+.++..| .|..|+----||+|..+|..+++.+-.+..
T Consensus 216 v~G~G~G~VdvFd~~-G~l~~r~as-~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 216 VAGAGLGYVNVFTLN-GQLLRRVAS-SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred ccCCCcceEEEEcCC-CcEEEEecc-CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence 445556899999975 677777643 23334455555433 355566555699999999999988777653
No 467
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=51.24 E-value=42 Score=32.13 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=42.5
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd 80 (313)
..+.++.-+|.|+.+++++.||.|++++....+..+..... .+-..+-|. +.-++++.+|..+--|.
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~-~p~~nlv~t--nhgl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA-KPKENLVFT--NHGLVTATSDRRALAWK 81 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc-CCccceeee--ccceEEEeccchhheee
Confidence 35677887899999999999999999998766542222111 111112222 22366666677776774
No 468
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=51.06 E-value=54 Score=27.58 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=36.1
Q ss_pred CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee------CCCcEEEEECCCC
Q 021399 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS------ADQTAKLWNVETG 84 (313)
Q Consensus 32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s------~D~~v~vWd~~~~ 84 (313)
..|++||.++.+-..--.+=.+.|.++.|..++++++.|. ....+-.||..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 3578999877654433344567899999986667777664 3455677777654
No 469
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.79 E-value=47 Score=33.40 Aligned_cols=59 Identities=15% Similarity=0.075 Sum_probs=41.5
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC---C-CCceEEEEECCCCCeEEE
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG---H-NGAVWCCDVSRDSMTLIT 69 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~---H-~~~V~~~~~~~~~~~l~s 69 (313)
....+|++|+|.|+.++.|-..|++.-|.... +....+.+ . ...|.++.|-..-.+++.
T Consensus 198 t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 198 TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ccceeeEEeccccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 34678999999999999999999999885432 22223321 1 467899999765555544
No 470
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=48.89 E-value=15 Score=24.75 Aligned_cols=18 Identities=39% Similarity=0.606 Sum_probs=15.4
Q ss_pred ccceeEEEECCCCCeeEE
Q 021399 288 FGPINALAFNPDGKRYGF 305 (313)
Q Consensus 288 ~~~V~~~~fspdgk~~~~ 305 (313)
.+.+-+=.||||||.++|
T Consensus 12 ~Gv~AAGefs~DGkLv~Y 29 (109)
T COG4831 12 KGVMAAGEFSPDGKLVEY 29 (109)
T ss_pred cceeEeceeCCCCceEEe
Confidence 567777889999999987
No 471
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=48.77 E-value=92 Score=29.97 Aligned_cols=71 Identities=8% Similarity=0.067 Sum_probs=47.4
Q ss_pred ceEEEEEc--cCCCEEEEeeCCCeEEEEECCCC--ceeeecccccCceeceEEEEECCCC-----C-EEEEeeCCCcEEE
Q 021399 148 RINRAVWG--PLNRTIISAGEDAIVRIWDTETG--KLLKESDKETGHKKTITSLAKAADG-----S-HFLTGSLDKSAKL 217 (313)
Q Consensus 148 ~i~~~~~~--~~~~~i~t~~~d~~i~lwd~~~~--~~~~~~~~~~~h~~~v~~~~~s~~~-----~-~l~s~s~dg~i~i 217 (313)
.+..++++ ...+.||.+++...|.||-.... +.... ....|...|.+++|-++. . .+++++-.|.+.+
T Consensus 165 SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~--~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~ 242 (717)
T PF08728_consen 165 SAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV--PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWT 242 (717)
T ss_pred ceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc--cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEE
Confidence 45566666 66788898888888888864331 11110 011256678888886543 2 7888999999998
Q ss_pred EEC
Q 021399 218 WDA 220 (313)
Q Consensus 218 wd~ 220 (313)
|++
T Consensus 243 ~~I 245 (717)
T PF08728_consen 243 FKI 245 (717)
T ss_pred EEE
Confidence 887
No 472
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=48.72 E-value=5.1 Score=35.84 Aligned_cols=63 Identities=14% Similarity=0.091 Sum_probs=51.1
Q ss_pred EEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEE
Q 021399 16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW 79 (313)
Q Consensus 16 ~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vW 79 (313)
+.|++.++.++-+-..+.+.|++..+.+.+....-|...+.++++.+.+ +.+.++.|.++.+=
T Consensus 123 l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 123 LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLSVT 185 (615)
T ss_pred HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHHHh
Confidence 6788888889988889999999988887766665599999999999876 56778888776543
No 473
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=48.65 E-value=13 Score=26.17 Aligned_cols=12 Identities=42% Similarity=0.875 Sum_probs=10.6
Q ss_pred EECCCCCeeEEE
Q 021399 295 AFNPDGKRYGFL 306 (313)
Q Consensus 295 ~fspdgk~~~~~ 306 (313)
.|||||++++|-
T Consensus 74 vfSpDG~~lSFT 85 (122)
T PF12566_consen 74 VFSPDGSWLSFT 85 (122)
T ss_pred EECCCCCEEEEE
Confidence 699999999984
No 474
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=47.60 E-value=1e+02 Score=25.49 Aligned_cols=59 Identities=12% Similarity=0.052 Sum_probs=34.8
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEE-EECCCCCEEEEeeCCCcEEEE
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSL-AKAADGSHFLTGSLDKSAKLW 218 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~-~~s~~~~~l~s~s~dg~i~iw 218 (313)
..++.|.+++.|.|.|.+....+.+.... +-...+.+. .+..-...|+.++.||.|.+.
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lp-svPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLP-SVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecC-CCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 35788999999999998876655544321 111111111 232122357888888887653
No 475
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=47.14 E-value=1.6e+02 Score=24.14 Aligned_cols=102 Identities=13% Similarity=0.148 Sum_probs=61.5
Q ss_pred EEEEEccCCC-EEEEeeCCCeEEEEE--CCCCceee-----ecccccCce-eceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399 150 NRAVWGPLNR-TIISAGEDAIVRIWD--TETGKLLK-----ESDKETGHK-KTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (313)
Q Consensus 150 ~~~~~~~~~~-~i~t~~~d~~i~lwd--~~~~~~~~-----~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~dg~i~iwd~ 220 (313)
+.+.|+.+.+ +..+-+.+-.|.-|| ..++.... .+....... ...-.++...+|+..++.-.-++|...|+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp 240 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP 240 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence 4566765544 345556677787787 44443211 111111111 11122334567888888888899999999
Q ss_pred CCCcEEEEEecC-CceeEEEe-ccCCCEEEEcc
Q 021399 221 RTLELIKTYVTE-RPVNAVTM-SPLLDHVVLGG 251 (313)
Q Consensus 221 ~~~~~~~~~~~~-~~~~~~~~-~p~~~~~~~~~ 251 (313)
.+++.+.++..+ ..+.+++| -|..+.++++.
T Consensus 241 ~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 241 TTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 999999998643 45788887 44455555543
No 476
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=45.43 E-value=2.6e+02 Score=26.05 Aligned_cols=136 Identities=14% Similarity=0.113 Sum_probs=75.1
Q ss_pred CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc---EEEEEecCCceeEEEeccCC
Q 021399 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE---LIKTYVTERPVNAVTMSPLL 244 (313)
Q Consensus 168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~~~~~~~p~~ 244 (313)
+.|.+.| .+-+.+..+... +....|.++.|--|.-+++|=-.=--+.+.|+...+ .+-.+. -+-.+--+||-+
T Consensus 304 N~lyVLD-~~L~~vG~l~~l-a~gE~IysvRF~Gd~~Y~VTFrqvDPLfviDLsdP~~P~vlGeLK--IPGfS~YLHP~~ 379 (521)
T PF09826_consen 304 NNLYVLD-EDLKIVGSLEGL-APGERIYSVRFMGDRAYLVTFRQVDPLFVIDLSDPANPKVLGELK--IPGFSDYLHPYD 379 (521)
T ss_pred EEEEEEC-CCCcEeEEcccc-CCCceEEEEEEeCCeEEEEEEeecCceEEEECCCCCCCceeeEEE--CccchhceeECC
Confidence 3566776 444444444322 356789999998888888887765567888887633 333333 233444568988
Q ss_pred CEEEEcccccCceeEeeccCCCceeeeeeehhhhhh---hcc--c---ccccc---ceeEEEECCCCCeeEEEEE
Q 021399 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE---IGG--V---KGHFG---PINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~---~~h~~---~V~~~~fspdgk~~~~~~~ 308 (313)
+..+++-|.+...- ..-.....+.+.+||...... +.+ + ..++. .=-++.|+++-+.|||=.-
T Consensus 380 e~~LlGiG~~~~~~-~~~~~~~GlKisLFDVSD~~~P~e~~~~~iG~~~s~S~a~~dhkAfl~~~~~~ll~~Pv~ 453 (521)
T PF09826_consen 380 ENHLLGIGKDTDED-EGTGWTQGLKISLFDVSDPANPKELDKEVIGDRGSYSEALYDHKAFLFDKEKNLLAFPVS 453 (521)
T ss_pred CCeEEEEcccCccc-ccccccceeEEEEEecCCCCCccEeEEEEcCCCCccCccccCceEEEEeCCCCEEEEEEE
Confidence 87787766554321 000112234566666521111 111 1 11111 1146788888877877554
No 477
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=44.70 E-value=2.2e+02 Score=25.16 Aligned_cols=227 Identities=18% Similarity=0.154 Sum_probs=94.3
Q ss_pred EEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEE--CCCCCeEEEee---CCC---------------
Q 021399 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRDSMTLITGS---ADQ--------------- 74 (313)
Q Consensus 15 ~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~--~~~~~~l~s~s---~D~--------------- 74 (313)
....+|+++.|+-...+..++--|+++.+....+...+.-+....| +.|+..++-.- .|.
T Consensus 85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a 164 (386)
T PF14583_consen 85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA 164 (386)
T ss_dssp T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence 4566788888876666677777788888765555555665654555 34454443221 111
Q ss_pred ----cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEE--ECCCceeccccceeeeeeeCCCCCCCceEEEec--CCC
Q 021399 75 ----TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVI--TTDPFMELNSAIHVKRIARDPADQGGESVLILK--GPQ 146 (313)
Q Consensus 75 ----~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 146 (313)
.|.--|+.+++....+.-..=...+.|+|.+--.+. -..+.-.+. -++|-+..+ +.....+. ...
T Consensus 165 ~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd--~RiW~i~~d-----g~~~~~v~~~~~~ 237 (386)
T PF14583_consen 165 RPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVD--QRIWTINTD-----GSNVKKVHRRMEG 237 (386)
T ss_dssp ---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS---SEEEEETT-----S---EESS---TT
T ss_pred CCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceec--eEEEEEEcC-----CCcceeeecCCCC
Confidence 122224444444333332222344455553322211 111111110 122222211 11111111 111
Q ss_pred CceEEEEEccCCCEEEE-----eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC--------
Q 021399 147 GRINRAVWGPLNRTIIS-----AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-------- 213 (313)
Q Consensus 147 ~~i~~~~~~~~~~~i~t-----~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg-------- 213 (313)
..+.--.|.|+|..|.- ++.+..|.=.|+.+++... +. .......+-.++||+.++-=+.|.
T Consensus 238 e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~-~~----~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~ 312 (386)
T PF14583_consen 238 ESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR-LM----EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAG 312 (386)
T ss_dssp EEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE-EE----EE-SEEEEEE-TTSSEEEEEE-----------
T ss_pred cccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE-EE----eCCceeeeEEcCCCCEEEecCCCCCccccccc
Confidence 22344567888876554 2335567777887765321 11 122334556678888766544432
Q ss_pred --------cEEEEECCCCcEEEEEec---------CCce--eEEEeccCCCEEEEcccc
Q 021399 214 --------SAKLWDARTLELIKTYVT---------ERPV--NAVTMSPLLDHVVLGGGQ 253 (313)
Q Consensus 214 --------~i~iwd~~~~~~~~~~~~---------~~~~--~~~~~~p~~~~~~~~~~~ 253 (313)
-|.+++++.+....--.+ ...+ --..|+|++..++..+..
T Consensus 313 ~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~ 371 (386)
T PF14583_consen 313 GYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDM 371 (386)
T ss_dssp --------EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-T
T ss_pred cceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCC
Confidence 456678876654321111 1111 247899999998876543
No 478
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=43.86 E-value=2.4e+02 Score=25.22 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=25.0
Q ss_pred eceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399 192 KTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (313)
Q Consensus 192 ~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (313)
..|.+++..+..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488999988889999999999999999975
No 479
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=43.26 E-value=1.8e+02 Score=28.57 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=31.8
Q ss_pred EECCCCCEEEEeeC---------CCcEEEEECCCCc-EEEEEecCCceeEEEeccCCCEEEEc
Q 021399 198 AKAADGSHFLTGSL---------DKSAKLWDARTLE-LIKTYVTERPVNAVTMSPLLDHVVLG 250 (313)
Q Consensus 198 ~~s~~~~~l~s~s~---------dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~ 250 (313)
..+||..+++.+.. -+...++++.++. ..........+..+.|+|.+++++..
T Consensus 103 ~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp~~~~l~yv 165 (755)
T KOG2100|consen 103 LISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGEKLHPPEYEGSKIQYASWSPLGNDLAYV 165 (755)
T ss_pred ccChhhhhheeccCcccccceeeEEEEEEEEcCCCCcccCcccCCCeeEEEEEcCCCCEEEEE
Confidence 45566665554432 3455677877776 22222234457889999999776654
No 480
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=41.22 E-value=3.3e+02 Score=26.14 Aligned_cols=32 Identities=9% Similarity=0.363 Sum_probs=27.7
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCC
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN 41 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~ 41 (313)
.+.|-.+.|.++++.++..-.+|.|.+||...
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~ 160 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSE 160 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccc
Confidence 34577889999999999999999999999943
No 481
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=39.62 E-value=1.5e+02 Score=21.78 Aligned_cols=52 Identities=10% Similarity=0.182 Sum_probs=26.8
Q ss_pred eceEEEEECCCCCEEEEeeC-CCcEEEEECCCCc----EEEEEecCCceeEEEeccC
Q 021399 192 KTITSLAKAADGSHFLTGSL-DKSAKLWDARTLE----LIKTYVTERPVNAVTMSPL 243 (313)
Q Consensus 192 ~~v~~~~~s~~~~~l~s~s~-dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~p~ 243 (313)
..+.--.+.+|.+.|..++. |++|+.|.+...+ .+..+....+...+++-|.
T Consensus 11 ~g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lPK 67 (136)
T PF08954_consen 11 SGVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLPK 67 (136)
T ss_dssp SS-EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--G
T ss_pred CceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEccccccCCCeEeeEecCc
Confidence 34555568888888777775 8899999987663 2333444556667777663
No 482
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=38.51 E-value=2.3e+02 Score=24.68 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=0.0
Q ss_pred CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCC-CceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCC
Q 021399 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSP 95 (313)
Q Consensus 21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~ 95 (313)
+|+ |+.++.++.+...|..+|+.+....... ..+....+-.++..++.. .|+.+..-|..+++..+......+
T Consensus 111 ~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~ 184 (370)
T COG1520 111 DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAP 184 (370)
T ss_pred CCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCc
No 483
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=38.13 E-value=77 Score=30.53 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=26.5
Q ss_pred CceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 53 GAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 53 ~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
..++++.-+|.++-+++++.||.+++++...
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~ 45 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIP 45 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence 4567888889999999999999999998643
No 484
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=36.44 E-value=3.3e+02 Score=24.95 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred eEEEEccCCCEEEEee--------------CCCCeEEEeCCCCcEEEEecCCCCc-------------------------
Q 021399 14 TYLKYNKDGDLLFSCA--------------KDHTPTVWFADNGERLGTYRGHNGA------------------------- 54 (313)
Q Consensus 14 ~~~~fs~~g~~l~s~s--------------~d~~i~iw~~~~~~~~~~~~~H~~~------------------------- 54 (313)
+.+.+-|+|++|+.+. .|. |...| .+|+.+.....-+.-
T Consensus 193 HD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~-Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW 270 (477)
T PF05935_consen 193 HDIDELPNGNLLILASETKYVDEDKDVDTVEDV-IVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDW 270 (477)
T ss_dssp S-EEE-TTS-EEEEEEETTEE-TS-EE---S-E-EEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS
T ss_pred cccEECCCCCEEEEEeecccccCCCCccEecCE-EEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCc
Q ss_pred --eEEEEECC-CCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 55 --VWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 55 --V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
++++.+.+ ++.+++|+-.-..|...|.++++..+.+
T Consensus 271 ~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 271 LHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWIL 309 (477)
T ss_dssp --EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEE
T ss_pred cccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEe
No 485
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.42 E-value=1.1e+02 Score=31.50 Aligned_cols=69 Identities=13% Similarity=0.277 Sum_probs=48.4
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeC----CCC---c-E----------------EEEec-CCCCceEEEEECCCCCe
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFA----DNG---E-R----------------LGTYR-GHNGAVWCCDVSRDSMT 66 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~----~~~---~-~----------------~~~~~-~H~~~V~~~~~~~~~~~ 66 (313)
.|.|+....+|+.+++|- || .||.+ .++ + + +-.+. .+..+|..+++...-+.
T Consensus 180 ~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~I 256 (1311)
T KOG1900|consen 180 SVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNI 256 (1311)
T ss_pred eEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccce
Confidence 478899888898887554 45 44432 221 1 1 01123 56779999999877778
Q ss_pred EEEeeCCCcEEEEECCC
Q 021399 67 LITGSADQTAKLWNVET 83 (313)
Q Consensus 67 l~s~s~D~~v~vWd~~~ 83 (313)
+.+=+..++|++||+..
T Consensus 257 lY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 257 LYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeccCceEEEEEccC
Confidence 89989999999999976
No 486
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=35.23 E-value=3.2e+02 Score=24.12 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=27.6
Q ss_pred EeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcc
Q 021399 208 TGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 208 s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~ 251 (313)
++..+|.+.-||..+... +.+. .-.-.|.++.+|+++.++++-
T Consensus 194 ~g~~~GRl~~YD~~tK~~-~VLld~L~F~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 194 EGDPTGRLFRYDPSTKVT-KVLLDGLYFPNGLALSPDGSFVLVAE 237 (376)
T ss_pred cCCCccceEEecCcccch-hhhhhcccccccccCCCCCCEEEEEe
Confidence 344567777777765443 2221 223468899999999888764
No 487
>PRK13614 lipoprotein LpqB; Provisional
Probab=35.22 E-value=3.9e+02 Score=25.24 Aligned_cols=107 Identities=11% Similarity=0.013 Sum_probs=51.7
Q ss_pred ceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEccccc-CceeEeeccCCCceeee
Q 021399 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQD-ASAVTTTDHRAGKFEAK 271 (313)
Q Consensus 193 ~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 271 (313)
.+.+.+.++++..++....|+. .+|-...+...+.......+..=+|.+++ .+.+....+ ...+..-+.-.+.....
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~~ 421 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRT-TLYTVSPGQPARALTSGSTLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQA 421 (573)
T ss_pred cccceeecCCCceEEEecCCCc-EEEEecCCCcceeeecCCCccCCcccCCC-CEEEeeCCCCceEEEEecCCCcccccc
Confidence 6778899999999888877763 34433333333333223334444455544 333222111 11111111000000000
Q ss_pred eeehhhhhhhcccccccc-ceeEEEECCCCCeeEEEE
Q 021399 272 FFDKILQEEIGGVKGHFG-PINALAFNPDGKRYGFLL 307 (313)
Q Consensus 272 ~~~~~~~~~~~~~~~h~~-~V~~~~fspdgk~~~~~~ 307 (313)
--+ . .......+ .|..+..|+||-+.|.+.
T Consensus 422 ~~~-----~-v~~~~l~g~~I~~lrvSrDG~R~Avi~ 452 (573)
T PRK13614 422 PTV-----T-LTADWLAGRTVKELRVSREGVRALVIS 452 (573)
T ss_pred cce-----e-ecccccCCCeeEEEEECCCccEEEEEE
Confidence 000 0 00111233 599999999999999987
No 488
>KOG3535 consensus Adaptor protein Disabled [Signal transduction mechanisms]
Probab=35.13 E-value=1.3e+02 Score=26.73 Aligned_cols=55 Identities=16% Similarity=0.144 Sum_probs=38.7
Q ss_pred EEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEEC----CCCC-eEEEeeCCCcEEEEECCCCe
Q 021399 25 LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS----RDSM-TLITGSADQTAKLWNVETGA 85 (313)
Q Consensus 25 l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~----~~~~-~l~s~s~D~~v~vWd~~~~~ 85 (313)
.+.-+.|| |+|.|-++|... |+.+|..|+|- .|.+ +=+.||..|.-+.+-+.+++
T Consensus 95 ~l~Is~~G-IKI~DEKtGav~-----H~hpV~~ISfIArD~tD~RAFGyVcG~eG~hkF~aIKTaQ 154 (557)
T KOG3535|consen 95 TLQISIDG-IKILDEKTGAVL-----HNHPVSRISFIARDSTDARAFGYVCGEEGKHKFYAIKTAQ 154 (557)
T ss_pred EEEEeecc-eEEeecccccee-----ccCccceeeeeecccccccceeeeecCCCceeEEEEeccc
Confidence 34445554 588888888654 77788888773 3444 33678888999999988765
No 489
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=34.04 E-value=5.6e+02 Score=26.64 Aligned_cols=127 Identities=17% Similarity=0.234 Sum_probs=62.1
Q ss_pred CCeEEEEECCC-----C-----ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC-CCCcEEEEEecCCce
Q 021399 167 DAIVRIWDTET-----G-----KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA-RTLELIKTYVTERPV 235 (313)
Q Consensus 167 d~~i~lwd~~~-----~-----~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~-~~~~~~~~~~~~~~~ 235 (313)
-|.++|+|+-. + ..++.+.. ...++.|.+++- -+|. |+++. .-+|.+|++ +....+..-..+-++
T Consensus 1064 RGr~hi~diIeVVPepgkP~t~~KlKel~~-eE~KGtVsavce-V~G~-l~~~~-GqKI~v~~l~r~~~ligVaFiD~~~ 1139 (1366)
T KOG1896|consen 1064 RGRIHIFDIIEVVPEPGKPFTKNKLKELYI-EEQKGTVSAVCE-VRGH-LLSSQ-GQKIIVRKLDRDSELIGVAFIDLPL 1139 (1366)
T ss_pred cccEEEEEEEEecCCCCCCcccceeeeeeh-hhcccceEEEEE-eccE-EEEcc-CcEEEEEEeccCCcceeeEEeccce
Confidence 37789998421 2 12333221 224566777653 4564 44443 357999999 555554443344455
Q ss_pred eEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
...++....+.++++--.....+..|+-...++. ++- -..-.-.++++.|=-||..++|+.+
T Consensus 1140 yv~s~~~vknlIl~gDV~ksisfl~fqeep~rls--L~s---------rd~~~l~v~s~EFLVdg~~L~flvs 1201 (1366)
T KOG1896|consen 1140 YVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLS--LLS---------RDFEPLNVYSTEFLVDGSNLSFLVS 1201 (1366)
T ss_pred eEEehhhhhhheehhhhhhceEEEEEccCceEEE--Eee---------cCCchhhceeeeeEEcCCeeEEEEE
Confidence 5555555555555442222222222221111110 000 0011336788888888888777654
No 490
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=33.09 E-value=2e+02 Score=21.17 Aligned_cols=66 Identities=21% Similarity=0.192 Sum_probs=0.0
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEE-----------ECCCCCEEEEeeCCCcEEEEECCCCcEEE
Q 021399 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA-----------KAADGSHFLTGSLDKSAKLWDARTLELIK 227 (313)
Q Consensus 160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~-----------~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 227 (313)
..+....||.+.++|..+++.+..+. .++.+-+..+- ...+..+-++--.||.+.+-|..|+..+.
T Consensus 43 l~f~d~~~G~v~V~~~~~G~~va~~~--~g~~GFvrgvlR~l~R~R~~~gv~~~~Pf~L~r~~dGrltL~Dp~Tg~~i~ 119 (135)
T TIGR03054 43 LVFEDRPDGAVAVVETPDGRLVAILE--PGQNGFVRVMLRGLARARARAGVAAEPPFRLTRYDNGRLTLTDPATGWSIE 119 (135)
T ss_pred EEEecCCCCeEEEEECCCCCEEEEec--CCCCchhhHhHHHHHHHHHHcCCCCCCCEEEEEEeCCcEEEEcCCCCcEEE
No 491
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=32.38 E-value=1.2e+02 Score=18.31 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=15.8
Q ss_pred ceeEEEEccCCCEEEEeeC
Q 021399 12 PLTYLKYNKDGDLLFSCAK 30 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~ 30 (313)
.++.+...|||+.|+.|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 4678889999999999864
No 492
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=31.87 E-value=3e+02 Score=26.88 Aligned_cols=77 Identities=23% Similarity=0.281 Sum_probs=47.0
Q ss_pred CcccccccccceeEEEEc----cCC--CEEEEeeCCCCeE-EEeCCC---C--cEEEEec--CCCCceEEEEECCCCCeE
Q 021399 2 RPILMKGHERPLTYLKYN----KDG--DLLFSCAKDHTPT-VWFADN---G--ERLGTYR--GHNGAVWCCDVSRDSMTL 67 (313)
Q Consensus 2 ~~~~l~~h~~~v~~~~fs----~~g--~~l~s~s~d~~i~-iw~~~~---~--~~~~~~~--~H~~~V~~~~~~~~~~~l 67 (313)
||+.++......+.++.+ +++ ..|+.|..+|+|. +-...+ . ..+.+++ -+..+|..+.+++..+.|
T Consensus 399 ~P~l~~~~~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~~L 478 (737)
T KOG3611|consen 399 RPLLVKTGDYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRGSL 478 (737)
T ss_pred CceEEecccceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCCeE
Confidence 466555543345555555 444 4677788888865 222222 1 1233332 234779999999888888
Q ss_pred EEeeCCCcEEE
Q 021399 68 ITGSADQTAKL 78 (313)
Q Consensus 68 ~s~s~D~~v~v 78 (313)
+.|+.++.++|
T Consensus 479 yVgs~~gV~qv 489 (737)
T KOG3611|consen 479 YVGSRSGVVQV 489 (737)
T ss_pred EEEccCcEEEe
Confidence 88898887665
No 493
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=31.74 E-value=2.3e+02 Score=27.85 Aligned_cols=70 Identities=19% Similarity=0.131 Sum_probs=49.1
Q ss_pred CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeec----ccc--------cCc----eeceEEEEECCCCCEEEEee
Q 021399 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES----DKE--------TGH----KKTITSLAKAADGSHFLTGS 210 (313)
Q Consensus 147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~----~~~--------~~h----~~~v~~~~~s~~~~~l~s~s 210 (313)
+.|.++.....+..++..-.||.|.+.|..+.+.+... ... .|. -....-++|||++.-++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 45667776677788999999999999998876544333 100 011 11334578999999999999
Q ss_pred CCCcEE
Q 021399 211 LDKSAK 216 (313)
Q Consensus 211 ~dg~i~ 216 (313)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 998866
No 494
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=29.85 E-value=1.4e+02 Score=29.65 Aligned_cols=64 Identities=11% Similarity=-0.047 Sum_probs=37.9
Q ss_pred Ccccc-cccccceeEEEEccCCCEEEE-eeCCC-----CeEEEeCCCCcE-EEEecCCCCceEEEEECCCCC
Q 021399 2 RPILM-KGHERPLTYLKYNKDGDLLFS-CAKDH-----TPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSM 65 (313)
Q Consensus 2 ~~~~l-~~h~~~v~~~~fs~~g~~l~s-~s~d~-----~i~iw~~~~~~~-~~~~~~H~~~V~~~~~~~~~~ 65 (313)
+|+++ ..+..+|..=+|||||++|+- .+..+ .|.+-++.+... +-.+.=-..+|..-.+.++|.
T Consensus 340 n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gd 411 (912)
T TIGR02171 340 ASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGD 411 (912)
T ss_pred CceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCCCC
Confidence 46666 667888899999999999998 45444 356666664421 112222234443334445554
No 495
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=29.79 E-value=3.7e+02 Score=23.22 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=46.1
Q ss_pred EEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcc
Q 021399 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 172 lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 251 (313)
++|+.+++.+.. .....|+. .|. +|+.-++-+..|.+.-+|.++++....-..+.....++|. |+.++++-
T Consensus 189 vidv~s~evl~~-GLsmPhSP-----RWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgm 259 (335)
T TIGR03032 189 VIDIPSGEVVAS-GLSMPHSP-----RWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGL 259 (335)
T ss_pred EEEeCCCCEEEc-CccCCcCC-----cEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEe
Confidence 467766655432 11122322 232 5778888888999999999888765555556677888887 77776653
No 496
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=29.33 E-value=1.3e+02 Score=20.08 Aligned_cols=29 Identities=17% Similarity=0.246 Sum_probs=22.1
Q ss_pred ceEEEEECCCCCEEEEee-CCCcEEEEECC
Q 021399 193 TITSLAKAADGSHFLTGS-LDKSAKLWDAR 221 (313)
Q Consensus 193 ~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~ 221 (313)
..+.+..+|++++|..++ ..+.|+++..+
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 356788999988877666 46789998765
No 497
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=28.96 E-value=3.2e+02 Score=24.61 Aligned_cols=64 Identities=16% Similarity=0.072 Sum_probs=42.3
Q ss_pred ceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE---EEEEecCCceeEEEeccCCCEEEEcccccC
Q 021399 190 HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL---IKTYVTERPVNAVTMSPLLDHVVLGGGQDA 255 (313)
Q Consensus 190 h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 255 (313)
....|.++.|-.|--+|+|--.-.-+.+.|+...+. +..+. -+..+--.||.+...+++.|.+.
T Consensus 426 ~gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNPenPkvlGeLK--IPGfS~YLHpigen~~lGvG~~~ 492 (603)
T COG4880 426 PGERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNPENPKVLGELK--IPGFSEYLHPIGENRLLGVGAYQ 492 (603)
T ss_pred CCceEEEEEEeCceEEEEEEeccCceEEEEcCCCCCCceeEEEe--cCCchhhccccCCCcEEEeeccc
Confidence 456788888887777788777666777888765433 33322 23344456898888888766543
No 498
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=28.26 E-value=5.4e+02 Score=26.27 Aligned_cols=100 Identities=12% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCC------CEEEEeeCCCcEEEEE
Q 021399 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG------SHFLTGSLDKSAKLWD 219 (313)
Q Consensus 146 ~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~------~~l~s~s~dg~i~iwd 219 (313)
.+++..+.-.-..+.++.+-..+.+.-+.......+.++....--+..+.|+++.+++ ++++.++.|+++++..
T Consensus 537 P~~~~Iv~~avnr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriis 616 (1205)
T KOG1898|consen 537 PERVRIVKCAVNRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIIS 616 (1205)
T ss_pred CCceEEEEEeecceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEE
Q ss_pred CCCCcEEEEEec---CCceeEEEeccCCC
Q 021399 220 ARTLELIKTYVT---ERPVNAVTMSPLLD 245 (313)
Q Consensus 220 ~~~~~~~~~~~~---~~~~~~~~~~p~~~ 245 (313)
+...-++..+.. ..++.++.+-+...
T Consensus 617 L~p~d~l~~ls~q~l~~~~~s~~iv~~~~ 645 (1205)
T KOG1898|consen 617 LDPSDCLQPLSVQGLSSPPESLCIVEMEA 645 (1205)
T ss_pred ecCcceEEEccccccCCCccceEEEEecc
No 499
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.94 E-value=5.8e+02 Score=24.94 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=36.7
Q ss_pred CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeec-ccccCceeceEEEEECCCCCEEEEeeCCCcEEEE
Q 021399 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKES-DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218 (313)
Q Consensus 147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iw 218 (313)
+++..+-|+.+.. +++...+|++++++.. +..+... .........|....+..+|-.+++. +|++.+-
T Consensus 84 ~~lI~mgWs~~ee-LI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~--~g~v~~i 152 (829)
T KOG2280|consen 84 GELIGMGWSDDEE-LICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLTV--SGQVILI 152 (829)
T ss_pred CCeeeecccCCce-EEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEec--CCcEEEE
Confidence 3566677887665 6667889999999974 2222211 0011223345554444466444444 4555443
No 500
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=27.65 E-value=3.9e+02 Score=22.90 Aligned_cols=103 Identities=11% Similarity=0.165 Sum_probs=0.0
Q ss_pred CceEEEEEccCCCEEEEeeCCCe------EEEEECCC------CceeeecccccCceeceE--------EEEECCCCCEE
Q 021399 147 GRINRAVWGPLNRTIISAGEDAI------VRIWDTET------GKLLKESDKETGHKKTIT--------SLAKAADGSHF 206 (313)
Q Consensus 147 ~~i~~~~~~~~~~~i~t~~~d~~------i~lwd~~~------~~~~~~~~~~~~h~~~v~--------~~~~s~~~~~l 206 (313)
+.+..+.+.+.+..++..++++. +...++.. +-.+........-.+... ++++.++|.++
T Consensus 20 GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred CcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Q ss_pred EEeeCC------CcEEEEECCCCcEEEEEecCCce----------------eEEEeccCCCEEEEc
Q 021399 207 LTGSLD------KSAKLWDARTLELIKTYVTERPV----------------NAVTMSPLLDHVVLG 250 (313)
Q Consensus 207 ~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~----------------~~~~~~p~~~~~~~~ 250 (313)
++.=.+ -.|+-++.. +..+..+..+... .+++++|++..++++
T Consensus 100 is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred EEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Done!