Query 021399
Match_columns 313
No_of_seqs 166 out of 2333
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 03:35:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_B GT-beta; complex (GTP-b 100.0 1.7E-42 5.8E-47 297.8 38.1 274 4-306 49-330 (340)
2 1vyh_C Platelet-activating fac 100.0 4.8E-42 1.7E-46 302.3 35.2 274 4-306 102-398 (410)
3 3zwl_B Eukaryotic translation 100.0 1.7E-41 5.8E-46 293.2 37.8 302 2-306 24-333 (369)
4 3ow8_A WD repeat-containing pr 100.0 1.7E-41 5.8E-46 289.3 35.6 274 5-306 27-308 (321)
5 2ynn_A Coatomer subunit beta'; 100.0 1.6E-41 5.6E-46 287.2 35.2 272 4-302 7-284 (304)
6 2pbi_B Guanine nucleotide-bind 100.0 2.2E-40 7.4E-45 286.2 35.5 274 4-306 58-344 (354)
7 3frx_A Guanine nucleotide-bind 100.0 2.5E-40 8.6E-45 281.8 35.4 279 5-306 12-304 (319)
8 4ery_A WD repeat-containing pr 100.0 6E-39 2E-43 272.2 37.7 275 5-306 18-297 (312)
9 3iz6_a 40S ribosomal protein R 100.0 1.4E-40 4.7E-45 290.2 28.0 273 4-305 60-361 (380)
10 2xzm_R RACK1; ribosome, transl 100.0 2.5E-38 8.7E-43 272.1 35.8 282 5-306 16-327 (343)
11 1nr0_A Actin interacting prote 100.0 1.5E-38 5.1E-43 293.7 33.6 287 5-306 13-342 (611)
12 1nr0_A Actin interacting prote 100.0 8.7E-38 3E-42 288.6 38.3 288 5-306 142-554 (611)
13 4gqb_B Methylosome protein 50; 100.0 9.1E-39 3.1E-43 274.8 28.8 228 8-303 80-314 (344)
14 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.3E-38 2.5E-42 269.5 34.1 286 5-306 10-322 (345)
15 4aow_A Guanine nucleotide-bind 100.0 3.7E-37 1.3E-41 263.5 37.3 281 5-305 33-323 (340)
16 4g56_B MGC81050 protein; prote 100.0 8.9E-39 3E-43 276.4 27.3 275 4-306 36-330 (357)
17 2pm7_B Protein transport prote 100.0 6.4E-38 2.2E-42 264.3 29.3 244 4-306 3-272 (297)
18 4e54_B DNA damage-binding prot 100.0 7.3E-38 2.5E-42 277.7 26.5 287 5-305 114-417 (435)
19 2ymu_A WD-40 repeat protein; u 100.0 2.4E-36 8.1E-41 276.8 35.9 280 5-306 11-321 (577)
20 3bg1_A Protein SEC13 homolog; 100.0 5.8E-38 2E-42 266.8 23.2 244 4-306 7-280 (316)
21 2hes_X YDR267CP; beta-propelle 100.0 2.6E-36 8.9E-41 258.2 33.5 278 4-306 8-315 (330)
22 3ow8_A WD repeat-containing pr 100.0 2.6E-36 8.7E-41 257.3 33.2 233 5-251 75-309 (321)
23 2ymu_A WD-40 repeat protein; u 100.0 9.9E-36 3.4E-40 272.7 36.9 266 5-305 298-566 (577)
24 1vyh_C Platelet-activating fac 100.0 4.1E-36 1.4E-40 264.5 32.9 233 4-251 144-399 (410)
25 1erj_A Transcriptional repress 100.0 1.1E-35 3.6E-40 260.4 35.2 271 8-306 62-376 (393)
26 3dm0_A Maltose-binding peripla 100.0 7.9E-36 2.7E-40 279.4 36.5 284 5-306 377-680 (694)
27 1r5m_A SIR4-interacting protei 100.0 2.2E-35 7.5E-40 259.5 34.6 269 8-307 106-413 (425)
28 4gqb_B Methylosome protein 50; 100.0 2.2E-36 7.6E-41 259.9 26.8 198 5-255 122-322 (344)
29 3ei3_B DNA damage-binding prot 100.0 2.4E-35 8.3E-40 256.9 32.5 280 5-306 68-370 (383)
30 3dwl_C Actin-related protein 2 100.0 1.6E-37 5.4E-42 270.0 18.2 238 3-305 4-268 (377)
31 3frx_A Guanine nucleotide-bind 100.0 7.5E-35 2.6E-39 248.0 33.8 231 4-251 59-305 (319)
32 1k8k_C P40, ARP2/3 complex 41 100.0 9E-35 3.1E-39 251.7 33.9 289 3-306 1-348 (372)
33 1gxr_A ESG1, transducin-like e 100.0 1.4E-34 4.9E-39 246.8 34.3 272 3-306 44-324 (337)
34 1sq9_A Antiviral protein SKI8; 100.0 4.9E-35 1.7E-39 255.8 31.9 274 4-301 10-367 (397)
35 2ynn_A Coatomer subunit beta'; 100.0 9.6E-35 3.3E-39 245.7 32.1 237 4-254 49-293 (304)
36 3odt_A Protein DOA1; ubiquitin 100.0 2.9E-34 1E-38 242.5 33.0 264 4-303 12-281 (313)
37 4ggc_A P55CDC, cell division c 100.0 4.1E-34 1.4E-38 242.3 33.9 268 13-306 28-302 (318)
38 2pm9_A Protein WEB1, protein t 100.0 3.3E-35 1.1E-39 258.3 26.9 288 3-305 60-400 (416)
39 4gga_A P55CDC, cell division c 100.0 7.9E-34 2.7E-38 250.6 34.1 268 13-306 108-382 (420)
40 3sfz_A APAF-1, apoptotic pepti 100.0 5.8E-34 2E-38 282.4 36.5 289 4-306 609-1021(1249)
41 4g56_B MGC81050 protein; prote 100.0 1.8E-34 6.3E-39 249.3 28.8 236 6-255 90-334 (357)
42 3mkq_A Coatomer beta'-subunit; 100.0 3.4E-34 1.2E-38 272.5 33.1 274 4-303 7-285 (814)
43 1got_B GT-beta; complex (GTP-b 100.0 2.1E-33 7.3E-38 241.1 34.6 233 5-251 92-331 (340)
44 3jrp_A Fusion protein of prote 100.0 2.6E-34 8.8E-39 249.1 28.6 244 4-306 5-274 (379)
45 1erj_A Transcriptional repress 100.0 2.8E-33 9.5E-38 245.1 35.2 221 11-243 124-363 (393)
46 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.2E-34 1.8E-38 245.4 29.8 239 5-255 56-326 (345)
47 4aez_A CDC20, WD repeat-contai 100.0 2.8E-33 9.7E-38 245.6 34.7 276 6-306 87-367 (401)
48 3dw8_B Serine/threonine-protei 100.0 3.4E-34 1.2E-38 254.3 29.0 282 8-306 26-434 (447)
49 2xzm_R RACK1; ribosome, transl 100.0 1.5E-33 5.2E-38 242.3 31.5 229 5-251 71-328 (343)
50 4a11_B DNA excision repair pro 100.0 2.1E-33 7.1E-38 245.8 32.0 277 4-306 37-352 (408)
51 3gre_A Serine/threonine-protei 100.0 1.9E-34 6.6E-39 255.5 25.4 283 7-306 60-427 (437)
52 2aq5_A Coronin-1A; WD40 repeat 100.0 3.5E-34 1.2E-38 251.3 25.9 235 5-304 76-329 (402)
53 4ery_A WD repeat-containing pr 100.0 1.5E-32 5.1E-37 232.7 34.7 237 4-252 59-299 (312)
54 3f3f_A Nucleoporin SEH1; struc 100.0 2.1E-33 7.1E-38 240.1 29.5 259 4-306 5-324 (351)
55 3i2n_A WD repeat-containing pr 100.0 1.1E-33 3.8E-38 243.3 27.0 284 5-305 13-338 (357)
56 1yfq_A Cell cycle arrest prote 100.0 1.2E-33 4E-38 242.1 25.8 277 5-307 6-311 (342)
57 1r5m_A SIR4-interacting protei 100.0 5.9E-33 2E-37 244.0 30.3 269 7-307 42-349 (425)
58 2pbi_B Guanine nucleotide-bind 100.0 3.1E-32 1.1E-36 235.1 33.9 234 5-251 101-345 (354)
59 3k26_A Polycomb protein EED; W 100.0 2.1E-33 7.3E-38 242.2 26.2 275 4-306 12-353 (366)
60 3v7d_B Cell division control p 100.0 1E-31 3.4E-36 239.9 37.9 265 5-306 157-449 (464)
61 3mmy_A MRNA export factor; mRN 100.0 1.5E-32 5.3E-37 236.9 31.1 272 5-307 34-334 (368)
62 1gxr_A ESG1, transducin-like e 100.0 7E-33 2.4E-37 236.3 27.7 269 9-306 8-283 (337)
63 2hes_X YDR267CP; beta-propelle 100.0 2.6E-32 8.9E-37 233.4 30.6 234 8-255 56-319 (330)
64 1pgu_A Actin interacting prote 100.0 6.1E-32 2.1E-36 248.9 34.6 285 4-306 154-601 (615)
65 3v7d_B Cell division control p 100.0 8.7E-32 3E-36 240.3 34.5 272 4-306 115-409 (464)
66 3vl1_A 26S proteasome regulato 100.0 2.1E-32 7.1E-37 241.0 29.8 276 5-301 93-398 (420)
67 2j04_B YDR362CP, TAU91; beta p 100.0 1.2E-33 4E-38 255.0 22.1 281 9-305 132-503 (524)
68 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-33 4.4E-38 279.9 24.4 267 9-306 960-1236(1249)
69 2pm9_A Protein WEB1, protein t 100.0 2.1E-33 7.3E-38 246.7 22.8 278 7-305 9-323 (416)
70 3iz6_a 40S ribosomal protein R 100.0 5.2E-33 1.8E-37 242.3 24.8 237 4-251 102-363 (380)
71 1pgu_A Actin interacting prote 100.0 8.8E-32 3E-36 247.8 33.4 279 4-299 12-349 (615)
72 2oaj_A Protein SNI1; WD40 repe 100.0 1.7E-32 5.8E-37 262.8 29.4 236 4-254 11-297 (902)
73 3vl1_A 26S proteasome regulato 100.0 2.1E-32 7E-37 241.0 27.2 267 13-305 59-351 (420)
74 3jro_A Fusion protein of prote 100.0 1E-32 3.5E-37 260.3 25.9 243 4-306 3-272 (753)
75 3dm0_A Maltose-binding peripla 100.0 2.7E-31 9.2E-36 248.7 34.1 231 4-251 424-681 (694)
76 4gq1_A NUP37; propeller, trans 100.0 4.9E-33 1.7E-37 243.5 19.0 234 8-306 87-377 (393)
77 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-30 4E-35 231.9 34.5 262 5-306 154-425 (445)
78 2xyi_A Probable histone-bindin 100.0 3.8E-32 1.3E-36 240.6 24.5 253 4-305 122-396 (430)
79 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.2E-31 7.6E-36 237.0 29.2 268 10-300 4-366 (450)
80 2oaj_A Protein SNI1; WD40 repe 100.0 2.9E-32 9.9E-37 261.1 24.3 289 5-304 146-646 (902)
81 1p22_A F-BOX/WD-repeat protein 100.0 5.6E-30 1.9E-34 226.9 35.7 260 7-305 130-400 (435)
82 3mkq_A Coatomer beta'-subunit; 100.0 8.6E-31 2.9E-35 249.1 32.5 229 4-247 49-285 (814)
83 2pm7_B Protein transport prote 100.0 3.9E-31 1.3E-35 222.7 26.0 199 4-252 47-274 (297)
84 2j04_A TAU60, YPL007P, hypothe 100.0 1.2E-31 4.1E-36 238.0 23.0 242 8-307 83-349 (588)
85 4h5i_A Guanine nucleotide-exch 100.0 6.9E-31 2.3E-35 227.6 27.2 208 7-222 130-343 (365)
86 3dwl_C Actin-related protein 2 100.0 8.1E-32 2.8E-36 234.0 21.0 194 4-250 49-269 (377)
87 1sq9_A Antiviral protein SKI8; 100.0 5.8E-31 2E-35 229.9 25.8 229 4-244 56-366 (397)
88 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.5E-29 5.1E-34 224.8 34.5 261 3-304 111-376 (445)
89 3vu4_A KMHSV2; beta-propeller 100.0 6.9E-30 2.4E-34 220.5 31.1 238 5-265 14-271 (355)
90 4aow_A Guanine nucleotide-bind 100.0 3.6E-29 1.2E-33 213.8 34.4 231 4-251 80-325 (340)
91 4h5i_A Guanine nucleotide-exch 100.0 9.7E-31 3.3E-35 226.7 23.9 246 4-263 67-341 (365)
92 3bg1_A Protein SEC13 homolog; 100.0 2.3E-31 7.7E-36 226.2 19.3 199 5-252 52-282 (316)
93 4gga_A P55CDC, cell division c 100.0 1.3E-29 4.3E-34 223.7 31.0 234 5-252 142-384 (420)
94 3k26_A Polycomb protein EED; W 100.0 2.1E-30 7.1E-35 223.5 24.5 241 9-251 68-354 (366)
95 3i2n_A WD repeat-containing pr 100.0 1.4E-30 4.8E-35 223.9 23.3 236 6-254 61-343 (357)
96 1k8k_C P40, ARP2/3 complex 41 100.0 9.5E-30 3.3E-34 220.1 27.6 209 4-222 46-274 (372)
97 4aez_A CDC20, WD repeat-contai 100.0 6.2E-29 2.1E-33 218.0 32.1 227 8-252 132-369 (401)
98 3zwl_B Eukaryotic translation 100.0 1.7E-28 6E-33 211.5 33.3 233 4-251 68-334 (369)
99 3odt_A Protein DOA1; ubiquitin 100.0 1.8E-28 6.1E-33 206.9 31.9 222 4-249 53-282 (313)
100 2aq5_A Coronin-1A; WD40 repeat 100.0 2.9E-29 1E-33 220.0 27.3 239 12-306 36-285 (402)
101 3mmy_A MRNA export factor; mRN 100.0 4.2E-29 1.4E-33 215.3 26.7 238 4-254 80-337 (368)
102 2j04_A TAU60, YPL007P, hypothe 100.0 2.7E-30 9.4E-35 229.4 19.0 252 8-306 13-285 (588)
103 3lrv_A PRE-mRNA-splicing facto 100.0 5.9E-30 2E-34 219.8 19.5 225 17-306 43-278 (343)
104 3jrp_A Fusion protein of prote 100.0 7.8E-29 2.7E-33 214.6 25.9 209 4-264 49-286 (379)
105 3ei3_B DNA damage-binding prot 100.0 2.4E-28 8.3E-33 212.6 28.8 231 7-250 115-370 (383)
106 1yfq_A Cell cycle arrest prote 100.0 8.7E-29 3E-33 211.7 24.8 236 3-252 49-312 (342)
107 3f3f_A Nucleoporin SEH1; struc 100.0 8.8E-29 3E-33 211.3 24.5 215 5-229 52-344 (351)
108 3dw8_B Serine/threonine-protei 100.0 2.4E-28 8.3E-33 216.6 27.2 235 5-252 76-436 (447)
109 3bws_A Protein LP49; two-domai 100.0 9.7E-28 3.3E-32 212.0 30.4 277 11-306 123-418 (433)
110 4gq1_A NUP37; propeller, trans 100.0 1.8E-29 6.2E-34 220.8 18.9 217 5-251 131-378 (393)
111 1l0q_A Surface layer protein; 100.0 5.7E-27 1.9E-31 204.3 34.0 241 6-265 28-275 (391)
112 2j04_B YDR362CP, TAU91; beta p 100.0 5.2E-29 1.8E-33 224.7 21.5 202 5-222 202-428 (524)
113 3lrv_A PRE-mRNA-splicing facto 100.0 9.7E-29 3.3E-33 212.2 21.9 185 11-252 77-280 (343)
114 1p22_A F-BOX/WD-repeat protein 100.0 1.7E-27 5.7E-32 211.1 29.7 224 4-254 167-404 (435)
115 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.6E-27 1.6E-31 209.1 31.2 226 6-243 98-365 (450)
116 1l0q_A Surface layer protein; 100.0 1.1E-26 3.8E-31 202.5 32.2 254 23-305 3-260 (391)
117 3gre_A Serine/threonine-protei 100.0 6.9E-28 2.4E-32 213.4 24.8 211 7-230 108-367 (437)
118 4e54_B DNA damage-binding prot 100.0 4.6E-28 1.6E-32 214.7 23.5 237 5-250 159-418 (435)
119 3jro_A Fusion protein of prote 100.0 4.9E-28 1.7E-32 228.4 22.7 209 4-264 47-284 (753)
120 4ggc_A P55CDC, cell division c 100.0 3.7E-26 1.3E-30 193.3 30.4 233 5-251 62-303 (318)
121 2xyi_A Probable histone-bindin 100.0 6.7E-27 2.3E-31 206.9 25.8 198 5-254 176-400 (430)
122 2w18_A PALB2, fancn, partner a 100.0 1.2E-26 4E-31 194.4 25.7 243 15-305 44-343 (356)
123 2w18_A PALB2, fancn, partner a 100.0 6.3E-27 2.2E-31 196.0 23.3 199 11-220 112-355 (356)
124 3bws_A Protein LP49; two-domai 100.0 1.7E-25 5.7E-30 197.7 29.8 239 5-254 164-422 (433)
125 4a11_B DNA excision repair pro 99.9 3.3E-25 1.1E-29 193.6 27.8 250 7-265 96-365 (408)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.9E-25 2E-29 193.5 29.5 227 3-300 171-409 (415)
127 3vu4_A KMHSV2; beta-propeller 99.9 5.6E-25 1.9E-29 189.8 24.9 229 11-252 59-325 (355)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.5E-24 5.2E-29 190.9 22.7 233 5-308 112-373 (415)
129 1nir_A Nitrite reductase; hemo 99.9 7.1E-22 2.4E-26 179.3 36.6 280 13-306 181-496 (543)
130 1nir_A Nitrite reductase; hemo 99.9 4.3E-23 1.5E-27 187.3 27.9 264 17-305 144-437 (543)
131 3vgz_A Uncharacterized protein 99.9 2.4E-22 8.2E-27 172.4 31.1 270 10-305 40-330 (353)
132 2ojh_A Uncharacterized protein 99.9 1.4E-23 4.7E-28 175.1 21.4 244 3-308 34-291 (297)
133 2ecf_A Dipeptidyl peptidase IV 99.9 2.2E-23 7.5E-28 196.4 25.4 269 10-308 36-399 (741)
134 1xfd_A DIP, dipeptidyl aminope 99.9 3.3E-23 1.1E-27 194.7 21.8 277 12-307 18-378 (723)
135 3u4y_A Uncharacterized protein 99.9 1.9E-21 6.4E-26 165.5 29.1 274 16-306 3-290 (331)
136 1ri6_A Putative isomerase YBHE 99.9 2.6E-21 8.8E-26 165.0 26.7 277 7-303 34-337 (343)
137 2ecf_A Dipeptidyl peptidase IV 99.9 1.2E-21 4.1E-26 184.6 25.1 274 12-308 110-444 (741)
138 2oit_A Nucleoporin 214KDA; NH2 99.9 2E-22 7E-27 178.1 16.5 196 10-251 36-259 (434)
139 2z3z_A Dipeptidyl aminopeptida 99.9 9.8E-21 3.4E-25 177.4 28.1 273 11-307 82-419 (706)
140 1k32_A Tricorn protease; prote 99.9 7.3E-21 2.5E-25 185.6 27.1 276 5-307 198-490 (1045)
141 3u4y_A Uncharacterized protein 99.9 2.7E-20 9.2E-25 158.4 27.3 243 8-263 38-302 (331)
142 3o4h_A Acylamino-acid-releasin 99.9 3E-21 1E-25 177.1 21.8 254 10-305 21-298 (582)
143 1k32_A Tricorn protease; prote 99.9 1.8E-20 6.1E-25 182.9 27.6 279 3-308 45-440 (1045)
144 1xfd_A DIP, dipeptidyl aminope 99.9 3.5E-21 1.2E-25 180.9 21.8 281 5-306 52-427 (723)
145 1ri6_A Putative isomerase YBHE 99.9 3.6E-20 1.2E-24 157.9 25.8 262 24-306 7-294 (343)
146 3hfq_A Uncharacterized protein 99.9 1E-20 3.5E-25 162.2 22.1 249 6-306 35-303 (347)
147 2oit_A Nucleoporin 214KDA; NH2 99.9 4.1E-21 1.4E-25 169.8 17.2 163 8-223 90-279 (434)
148 2z3z_A Dipeptidyl aminopeptida 99.9 2.6E-20 8.8E-25 174.6 23.2 268 13-307 28-374 (706)
149 2ojh_A Uncharacterized protein 99.9 9.8E-20 3.3E-24 151.6 24.2 211 27-309 17-237 (297)
150 3vgz_A Uncharacterized protein 99.8 3.6E-18 1.2E-22 146.3 30.3 227 11-253 89-334 (353)
151 1z68_A Fibroblast activation p 99.8 3E-20 1E-24 174.6 17.8 270 14-308 19-375 (719)
152 3pe7_A Oligogalacturonate lyas 99.8 4.5E-19 1.6E-23 154.1 24.0 291 4-307 24-369 (388)
153 1pby_B Quinohemoprotein amine 99.8 1.5E-18 5E-23 147.6 26.3 230 23-265 2-310 (337)
154 3scy_A Hypothetical bacterial 99.8 3.9E-18 1.3E-22 147.0 28.9 239 9-253 48-326 (361)
155 4a5s_A Dipeptidyl peptidase 4 99.8 2.3E-19 7.9E-24 169.1 22.3 229 11-307 17-337 (740)
156 1jmx_B Amine dehydrogenase; ox 99.8 2.4E-18 8.4E-23 147.0 25.1 238 15-263 4-323 (349)
157 3hfq_A Uncharacterized protein 99.8 7E-17 2.4E-21 138.3 26.8 211 7-267 82-321 (347)
158 1pby_B Quinohemoprotein amine 99.8 1.1E-17 3.7E-22 142.1 20.8 206 11-231 82-319 (337)
159 3scy_A Hypothetical bacterial 99.8 2.6E-16 9E-21 135.5 28.3 270 20-306 11-323 (361)
160 1z68_A Fibroblast activation p 99.8 3E-18 1E-22 161.0 16.0 276 12-307 61-428 (719)
161 2oiz_A Aromatic amine dehydrog 99.8 1.2E-16 4E-21 137.9 23.7 256 15-301 54-360 (361)
162 1jof_A Carboxy-CIS,CIS-muconat 99.8 7.4E-17 2.5E-21 139.3 22.3 237 11-306 40-327 (365)
163 3c5m_A Oligogalacturonate lyas 99.8 1.5E-16 5E-21 138.3 23.4 278 13-307 38-369 (396)
164 3fvz_A Peptidyl-glycine alpha- 99.8 2.3E-15 7.8E-20 128.1 28.8 242 10-303 23-306 (329)
165 1jmx_B Amine dehydrogenase; ox 99.7 4.8E-16 1.6E-20 132.7 23.6 213 12-231 44-334 (349)
166 1q7f_A NHL, brain tumor CG1071 99.7 9.1E-15 3.1E-19 121.7 27.1 228 7-304 26-266 (286)
167 3o4h_A Acylamino-acid-releasin 99.7 1.4E-16 4.7E-21 146.1 17.3 226 52-306 21-262 (582)
168 3e5z_A Putative gluconolactona 99.7 2.4E-14 8.2E-19 119.8 28.4 235 4-252 21-276 (296)
169 4a5s_A Dipeptidyl peptidase 4 99.7 8.9E-16 3E-20 144.6 20.7 281 15-307 66-434 (740)
170 3pe7_A Oligogalacturonate lyas 99.7 1.4E-15 4.8E-20 132.0 20.1 240 6-252 76-370 (388)
171 3azo_A Aminopeptidase; POP fam 99.7 2.7E-15 9.1E-20 139.5 22.8 287 4-308 17-354 (662)
172 3no2_A Uncharacterized protein 99.7 1.8E-14 6.1E-19 119.4 24.1 191 21-269 4-199 (276)
173 2xdw_A Prolyl endopeptidase; a 99.7 6.8E-15 2.3E-19 138.0 24.0 236 8-308 122-399 (710)
174 2dg1_A DRP35, lactonase; beta 99.7 1.2E-13 4.2E-18 117.3 29.0 239 6-252 40-299 (333)
175 2dg1_A DRP35, lactonase; beta 99.7 6.4E-14 2.2E-18 119.1 25.5 275 10-307 5-298 (333)
176 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.6E-14 8.8E-19 123.4 22.1 192 13-252 85-329 (365)
177 2gop_A Trilobed protease; beta 99.6 2.4E-13 8.1E-18 116.1 27.2 210 11-242 59-311 (347)
178 3c5m_A Oligogalacturonate lyas 99.6 5.6E-14 1.9E-18 122.0 21.9 226 14-252 84-370 (396)
179 2bkl_A Prolyl endopeptidase; m 99.6 2.4E-14 8.1E-19 134.0 20.0 232 8-308 118-382 (695)
180 3azo_A Aminopeptidase; POP fam 99.6 2.2E-13 7.5E-18 126.6 25.7 253 4-267 61-371 (662)
181 1qks_A Cytochrome CD1 nitrite 99.6 1.2E-11 4.1E-16 112.3 34.7 280 12-305 198-519 (567)
182 3dsm_A Uncharacterized protein 99.6 4.3E-12 1.5E-16 107.8 26.5 223 12-302 45-280 (328)
183 1rwi_B Serine/threonine-protei 99.6 1.8E-12 6.2E-17 106.6 22.8 222 12-303 25-248 (270)
184 3fvz_A Peptidyl-glycine alpha- 99.5 1.8E-12 6.3E-17 110.1 23.0 200 8-252 88-310 (329)
185 2z2n_A Virginiamycin B lyase; 99.5 2.1E-10 7.1E-15 95.4 34.8 266 5-303 9-280 (299)
186 1q7f_A NHL, brain tumor CG1071 99.5 1.2E-11 4.2E-16 102.6 26.8 187 8-250 74-267 (286)
187 2oiz_A Aromatic amine dehydrog 99.5 2.2E-12 7.5E-17 111.1 22.8 217 11-245 108-360 (361)
188 1qks_A Cytochrome CD1 nitrite 99.5 1.4E-11 4.9E-16 111.8 27.5 221 18-251 163-407 (567)
189 1xip_A Nucleoporin NUP159; bet 99.5 1.4E-12 4.9E-17 112.1 18.2 171 12-250 39-231 (388)
190 3no2_A Uncharacterized protein 99.5 1.8E-11 6.1E-16 101.3 24.3 185 11-250 37-230 (276)
191 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 2E-11 6.8E-16 102.5 24.8 228 7-303 14-282 (314)
192 1yr2_A Prolyl oligopeptidase; 99.5 3.8E-12 1.3E-16 119.9 22.3 232 9-308 161-426 (741)
193 2gop_A Trilobed protease; beta 99.5 1.6E-11 5.4E-16 104.7 23.4 237 11-300 15-274 (347)
194 3g4e_A Regucalcin; six bladed 99.5 2.7E-10 9.3E-15 95.2 29.1 237 6-252 8-261 (297)
195 2qc5_A Streptogramin B lactona 99.4 3.6E-09 1.2E-13 87.8 33.6 265 7-303 16-286 (300)
196 3dsm_A Uncharacterized protein 99.4 2.5E-10 8.6E-15 96.9 25.0 221 11-240 84-319 (328)
197 3e5z_A Putative gluconolactona 99.4 2.2E-10 7.7E-15 95.5 23.9 227 44-305 19-273 (296)
198 2bkl_A Prolyl endopeptidase; m 99.4 4.3E-11 1.5E-15 111.9 21.2 178 19-250 76-287 (695)
199 2mad_H Methylamine dehydrogena 99.4 3.2E-09 1.1E-13 91.6 30.9 270 17-308 27-337 (373)
200 3sjl_D Methylamine dehydrogena 99.4 2.4E-10 8.3E-15 98.0 22.7 233 15-265 82-363 (386)
201 3iuj_A Prolyl endopeptidase; h 99.4 4.6E-11 1.6E-15 111.7 19.6 229 8-308 126-390 (693)
202 2mad_H Methylamine dehydrogena 99.4 5.9E-09 2E-13 89.9 31.4 237 15-264 70-349 (373)
203 1rwi_B Serine/threonine-protei 99.4 3.6E-10 1.2E-14 92.7 22.6 185 9-251 65-251 (270)
204 3dr2_A Exported gluconolactona 99.3 5.2E-10 1.8E-14 93.8 23.2 237 3-252 37-296 (305)
205 1xip_A Nucleoporin NUP159; bet 99.3 5.1E-11 1.8E-15 102.5 17.1 144 3-210 81-232 (388)
206 2xdw_A Prolyl endopeptidase; a 99.3 1.1E-09 3.9E-14 102.5 25.8 202 13-224 173-416 (710)
207 2z2n_A Virginiamycin B lyase; 99.3 7.5E-08 2.6E-12 79.7 33.5 220 9-248 55-281 (299)
208 3sjl_D Methylamine dehydrogena 99.3 2.3E-09 8E-14 91.9 24.1 271 16-307 38-349 (386)
209 2ghs_A AGR_C_1268P; regucalcin 99.3 1.1E-08 3.7E-13 86.6 27.7 228 12-252 50-291 (326)
210 3c75_H MADH, methylamine dehyd 99.3 1.4E-09 4.7E-14 94.9 21.3 232 15-264 122-401 (426)
211 2qe8_A Uncharacterized protein 99.2 3.3E-09 1.1E-13 90.5 23.1 232 11-303 17-305 (343)
212 3hrp_A Uncharacterized protein 99.2 1.7E-08 5.9E-13 88.2 27.8 223 10-250 130-396 (409)
213 2hz6_A Endoplasmic reticulum t 99.2 2.5E-12 8.4E-17 111.1 2.9 206 21-302 8-217 (369)
214 2iwa_A Glutamine cyclotransfer 99.2 2.7E-08 9.3E-13 80.9 25.3 188 12-255 22-228 (266)
215 1pjx_A Dfpase, DIISOPROPYLFLUO 99.2 9.7E-09 3.3E-13 86.0 22.5 203 9-222 69-299 (314)
216 1mda_H Methylamine dehydrogena 99.2 4.5E-09 1.5E-13 90.1 19.7 221 15-242 69-366 (368)
217 3nol_A Glutamine cyclotransfer 99.1 3E-08 1E-12 79.8 22.0 184 12-253 44-245 (262)
218 2qc5_A Streptogramin B lactona 99.1 7E-07 2.4E-11 73.8 31.1 222 9-250 60-288 (300)
219 3nok_A Glutaminyl cyclase; bet 99.1 1.8E-08 6.3E-13 81.1 20.1 181 12-252 56-254 (268)
220 3c75_H MADH, methylamine dehyd 99.1 5.4E-08 1.9E-12 84.8 24.6 269 20-308 82-389 (426)
221 1yr2_A Prolyl oligopeptidase; 99.1 1.9E-08 6.6E-13 94.7 23.1 201 14-224 212-443 (741)
222 1mda_H Methylamine dehydrogena 99.1 2.6E-08 8.9E-13 85.3 21.8 249 33-299 47-367 (368)
223 1kb0_A Quinohemoprotein alcoho 99.1 3E-08 1E-12 92.2 23.4 267 21-305 127-536 (677)
224 3g4e_A Regucalcin; six bladed 99.1 1.8E-07 6.2E-12 77.9 25.5 223 51-306 11-259 (297)
225 3mbr_X Glutamine cyclotransfer 99.0 3E-07 1E-11 73.4 24.2 185 11-253 21-224 (243)
226 1yiq_A Quinohemoprotein alcoho 99.0 1.2E-07 4.1E-12 88.3 24.8 71 21-91 120-200 (689)
227 2ghs_A AGR_C_1268P; regucalcin 99.0 7.2E-07 2.5E-11 75.4 26.2 217 55-306 51-289 (326)
228 2ece_A 462AA long hypothetical 99.0 3.4E-07 1.1E-11 79.4 23.3 195 17-263 88-350 (462)
229 3iuj_A Prolyl endopeptidase; h 99.0 2.8E-08 9.6E-13 92.8 17.8 193 50-308 126-345 (693)
230 2qe8_A Uncharacterized protein 99.0 1.1E-07 3.9E-12 80.9 20.1 218 7-250 63-308 (343)
231 3dr2_A Exported gluconolactona 99.0 6.2E-07 2.1E-11 74.9 24.3 226 45-306 37-294 (305)
232 3hrp_A Uncharacterized protein 98.9 1.1E-06 3.9E-11 76.6 23.8 204 16-220 176-408 (409)
233 1yiq_A Quinohemoprotein alcoho 98.8 1.1E-06 3.7E-11 81.9 20.7 216 14-249 238-534 (689)
234 2hz6_A Endoplasmic reticulum t 98.7 1.8E-09 6E-14 93.2 1.3 163 12-236 39-206 (369)
235 2iwa_A Glutamine cyclotransfer 98.7 3.8E-06 1.3E-10 68.3 20.0 202 44-308 11-224 (266)
236 1kb0_A Quinohemoprotein alcoho 98.7 3.6E-06 1.2E-10 78.3 22.6 205 22-230 77-354 (677)
237 2ece_A 462AA long hypothetical 98.7 3.4E-06 1.2E-10 73.2 20.4 187 13-251 140-399 (462)
238 1fwx_A Nitrous oxide reductase 98.7 4.6E-07 1.6E-11 81.2 15.2 256 20-309 99-407 (595)
239 3nol_A Glutamine cyclotransfer 98.6 4.3E-06 1.5E-10 67.3 18.2 196 44-303 33-239 (262)
240 1npe_A Nidogen, entactin; glyc 98.6 8.9E-05 3.1E-09 60.4 26.4 220 11-244 36-262 (267)
241 3q7m_A Lipoprotein YFGL, BAMB; 98.6 1.4E-05 4.8E-10 68.6 20.6 228 21-269 102-341 (376)
242 3q7m_A Lipoprotein YFGL, BAMB; 98.5 0.00015 5.1E-09 62.1 25.6 229 21-268 52-299 (376)
243 3nok_A Glutaminyl cyclase; bet 98.5 3.3E-05 1.1E-09 62.2 19.6 195 44-303 45-249 (268)
244 2ad6_A Methanol dehydrogenase 98.5 6.7E-05 2.3E-09 68.3 23.1 70 22-92 115-194 (571)
245 3mbr_X Glutamine cyclotransfer 98.4 0.00019 6.4E-09 57.3 22.5 196 44-303 11-218 (243)
246 1kv9_A Type II quinohemoprotei 98.4 6.4E-05 2.2E-09 69.8 22.8 70 22-92 117-196 (668)
247 1npe_A Nidogen, entactin; glyc 98.4 0.00049 1.7E-08 55.9 25.9 249 23-301 2-263 (267)
248 1fwx_A Nitrous oxide reductase 98.4 1.5E-05 5E-10 71.6 16.3 209 12-252 135-407 (595)
249 1k3i_A Galactose oxidase precu 98.4 0.00011 3.7E-09 68.1 22.4 98 15-112 190-305 (656)
250 1w6s_A Methanol dehydrogenase 98.3 0.0002 6.8E-09 65.4 23.1 77 16-93 111-201 (599)
251 2xe4_A Oligopeptidase B; hydro 98.3 0.0001 3.4E-09 69.5 21.1 188 12-254 175-388 (751)
252 1kv9_A Type II quinohemoprotei 98.3 0.00012 4.1E-09 67.9 20.8 78 15-92 234-342 (668)
253 1flg_A Protein (quinoprotein e 98.3 0.00071 2.4E-08 61.6 25.5 71 22-92 117-202 (582)
254 2p4o_A Hypothetical protein; p 98.2 0.0013 4.6E-08 54.5 26.0 224 11-252 32-277 (306)
255 3hxj_A Pyrrolo-quinoline quino 98.2 5.1E-05 1.7E-09 63.5 15.8 246 12-303 61-309 (330)
256 2fp8_A Strictosidine synthase; 98.2 0.0018 6E-08 54.2 26.7 215 5-231 13-277 (322)
257 3hxj_A Pyrrolo-quinoline quino 98.1 0.00049 1.7E-08 57.4 20.1 203 22-250 107-311 (330)
258 1flg_A Protein (quinoprotein e 98.1 0.00054 1.9E-08 62.4 19.8 80 166-249 464-545 (582)
259 4a2l_A BT_4663, two-component 98.0 0.0098 3.3E-07 56.3 31.9 268 13-302 175-465 (795)
260 1k3i_A Galactose oxidase precu 98.0 0.00098 3.3E-08 61.7 20.4 75 13-87 245-327 (656)
261 4a2l_A BT_4663, two-component 98.0 0.013 4.3E-07 55.6 36.1 269 10-302 214-511 (795)
262 2ad6_A Methanol dehydrogenase 97.9 0.0011 3.7E-08 60.3 19.4 79 166-248 442-522 (571)
263 2p9w_A MAL S 1 allergenic prot 97.9 0.0012 4.1E-08 55.0 16.8 180 3-223 5-216 (334)
264 2xe4_A Oligopeptidase B; hydro 97.8 0.00046 1.6E-08 65.0 15.6 73 151-223 225-305 (751)
265 1w6s_A Methanol dehydrogenase 97.7 0.025 8.4E-07 51.6 24.7 71 22-92 62-149 (599)
266 2fp8_A Strictosidine synthase; 97.7 0.016 5.5E-07 48.2 23.6 197 12-222 81-313 (322)
267 3amr_A 3-phytase; beta-propell 97.6 0.025 8.7E-07 47.5 22.3 189 21-264 39-262 (355)
268 2p4o_A Hypothetical protein; p 97.5 0.027 9.3E-07 46.5 27.5 238 42-305 22-274 (306)
269 3tc9_A Hypothetical hydrolase; 97.4 0.057 2E-06 47.1 23.6 154 11-176 137-300 (430)
270 3v9f_A Two-component system se 97.4 0.11 3.6E-06 49.1 31.4 237 11-266 363-612 (781)
271 3qqz_A Putative uncharacterize 97.2 0.066 2.3E-06 43.0 26.5 199 6-250 22-240 (255)
272 3amr_A 3-phytase; beta-propell 97.1 0.1 3.5E-06 43.8 18.4 135 167-311 98-253 (355)
273 3v65_B Low-density lipoprotein 97.0 0.13 4.5E-06 44.0 24.1 206 11-230 116-326 (386)
274 4hw6_A Hypothetical protein, I 96.9 0.21 7.1E-06 43.6 20.0 202 10-221 181-432 (433)
275 2xbg_A YCF48-like protein; pho 96.8 0.16 5.6E-06 42.3 30.0 259 11-303 36-307 (327)
276 1n7d_A LDL receptor, low-densi 96.8 0.04 1.4E-06 51.3 15.4 208 11-230 406-622 (699)
277 3v64_C Agrin; beta propeller, 96.8 0.2 6.9E-06 42.2 24.1 205 12-230 74-283 (349)
278 1ijq_A LDL receptor, low-densi 96.7 0.2 6.7E-06 41.6 26.3 207 11-230 30-246 (316)
279 2ism_A Putative oxidoreductase 96.7 0.09 3.1E-06 44.5 16.0 101 148-252 32-153 (352)
280 2p9w_A MAL S 1 allergenic prot 96.7 0.22 7.4E-06 41.5 18.2 95 167-264 99-214 (334)
281 3tc9_A Hypothetical hydrolase; 96.6 0.13 4.4E-06 44.9 16.8 158 55-221 139-300 (430)
282 3qqz_A Putative uncharacterize 96.5 0.25 8.6E-06 39.6 19.4 118 142-262 22-150 (255)
283 3kya_A Putative phosphatase; s 96.5 0.16 5.3E-06 45.0 16.0 104 148-251 140-265 (496)
284 3v9f_A Two-component system se 96.4 0.62 2.1E-05 43.8 33.7 264 11-302 258-552 (781)
285 3a9g_A Putative uncharacterize 96.4 0.24 8.4E-06 41.8 16.7 103 147-252 29-153 (354)
286 3p5b_L Low density lipoprotein 96.4 0.4 1.4E-05 41.3 27.3 209 10-230 111-328 (400)
287 4hw6_A Hypothetical protein, I 96.2 0.56 1.9E-05 40.8 27.5 201 11-224 139-375 (433)
288 2xbg_A YCF48-like protein; pho 96.2 0.45 1.5E-05 39.6 25.5 217 10-250 79-309 (327)
289 3v64_C Agrin; beta propeller, 96.1 0.51 1.8E-05 39.7 27.9 220 12-250 35-261 (349)
290 3v65_B Low-density lipoprotein 96.0 0.64 2.2E-05 39.7 27.0 194 13-223 79-278 (386)
291 3kya_A Putative phosphatase; s 96.0 0.8 2.7E-05 40.5 18.5 62 12-73 140-213 (496)
292 3m0c_C LDL receptor, low-densi 95.8 1.3 4.4E-05 41.8 26.4 208 10-229 423-639 (791)
293 3das_A Putative oxidoreductase 95.7 0.78 2.7E-05 38.6 18.3 107 145-252 30-158 (347)
294 2xzh_A Clathrin heavy chain 1; 95.4 0.96 3.3E-05 37.6 25.1 214 15-240 71-309 (365)
295 2g8s_A Glucose/sorbosone dehyd 95.4 0.5 1.7E-05 39.8 14.1 104 148-253 19-149 (353)
296 2ism_A Putative oxidoreductase 95.3 1.1 3.8E-05 37.7 25.2 100 10-112 30-153 (352)
297 2vpj_A Kelch-like protein 12; 95.2 1 3.4E-05 36.7 22.3 66 157-225 159-234 (301)
298 3sre_A PON1, serum paraoxonase 94.4 2 6.9E-05 36.2 23.5 57 192-248 221-282 (355)
299 3sov_A LRP-6, low-density lipo 94.3 1.9 6.4E-05 35.7 24.2 205 12-230 36-246 (318)
300 1bpo_A Protein (clathrin); cla 94.3 2.4 8.1E-05 36.8 25.5 216 15-242 70-310 (494)
301 1tl2_A L10, protein (tachylect 94.1 0.48 1.7E-05 37.0 9.7 66 11-81 41-114 (236)
302 3s94_A LRP-6, low-density lipo 93.7 4 0.00014 37.3 21.2 205 10-228 39-249 (619)
303 3pbp_A Nucleoporin NUP82; beta 93.7 1.7 5.8E-05 37.5 13.1 101 148-250 67-197 (452)
304 3pbp_A Nucleoporin NUP82; beta 93.3 3.6 0.00012 35.5 19.1 163 19-217 29-207 (452)
305 3ii7_A Kelch-like protein 7; p 93.1 3 0.0001 33.9 18.5 65 21-87 55-131 (306)
306 2xn4_A Kelch-like protein 2; s 92.9 3.2 0.00011 33.6 22.2 65 157-224 155-231 (302)
307 4a0p_A LRP6, LRP-6, low-densit 92.5 6.2 0.00021 36.1 23.7 199 11-225 37-240 (628)
308 3m0c_C LDL receptor, low-densi 92.1 8.1 0.00028 36.4 27.3 181 30-225 402-592 (791)
309 3p5b_L Low density lipoprotein 91.8 5.6 0.00019 34.0 29.2 186 23-224 84-279 (400)
310 1cru_A Protein (soluble quinop 91.6 6.5 0.00022 34.3 20.2 105 147-252 27-162 (454)
311 1xi4_A Clathrin heavy chain; a 91.3 7.3 0.00025 39.3 15.5 202 16-229 71-296 (1630)
312 1zgk_A Kelch-like ECH-associat 91.2 5.2 0.00018 32.5 21.1 65 157-224 168-242 (308)
313 2be1_A Serine/threonine-protei 91.0 4.7 0.00016 33.7 12.4 66 23-88 11-81 (339)
314 2vpj_A Kelch-like protein 12; 90.9 5.4 0.00019 32.1 19.6 65 20-86 61-140 (301)
315 3sov_A LRP-6, low-density lipo 90.5 6.5 0.00022 32.4 23.7 176 31-222 12-197 (318)
316 2xzh_A Clathrin heavy chain 1; 90.4 6.9 0.00024 32.6 15.9 124 166-308 47-171 (365)
317 1n7d_A LDL receptor, low-densi 90.2 2.4 8.2E-05 39.4 11.0 161 12-184 454-621 (699)
318 1ijq_A LDL receptor, low-densi 89.7 7.4 0.00025 31.9 28.7 202 32-251 10-225 (316)
319 1cru_A Protein (soluble quinop 88.7 10 0.00035 33.0 13.4 104 10-113 26-163 (454)
320 1bpo_A Protein (clathrin); cla 87.4 14 0.00048 32.2 15.0 124 166-308 46-170 (494)
321 2be1_A Serine/threonine-protei 86.8 4.7 0.00016 33.7 9.6 118 65-232 11-140 (339)
322 2wg3_C Hedgehog-interacting pr 86.4 16 0.00055 31.9 17.0 104 149-253 16-158 (463)
323 3ii7_A Kelch-like protein 7; p 86.2 12 0.0004 30.2 22.9 62 24-87 14-83 (306)
324 3das_A Putative oxidoreductase 85.0 16 0.00054 30.6 14.0 108 6-113 27-159 (347)
325 3sre_A PON1, serum paraoxonase 85.0 16 0.00055 30.6 18.8 120 167-303 138-281 (355)
326 2uvk_A YJHT; unknown function, 84.7 16 0.00054 30.2 14.5 57 169-228 286-348 (357)
327 4gq2_M Nucleoporin NUP120; bet 84.0 11 0.00039 36.3 12.0 38 54-91 237-274 (950)
328 2xn4_A Kelch-like protein 2; s 83.9 15 0.00052 29.5 19.7 65 21-87 61-137 (302)
329 2g8s_A Glucose/sorbosone dehyd 83.0 19 0.00066 30.0 25.6 102 10-113 17-149 (353)
330 1tl2_A L10, protein (tachylect 82.8 4.8 0.00017 31.4 7.2 98 148-250 42-152 (236)
331 4a0p_A LRP6, LRP-6, low-densit 81.4 32 0.0011 31.4 27.7 203 30-250 13-223 (628)
332 4gq2_M Nucleoporin NUP120; bet 81.1 2.4 8.3E-05 40.9 6.2 38 193-230 237-274 (950)
333 3ei3_A DNA damage-binding prot 80.2 49 0.0017 32.8 24.5 79 147-226 554-642 (1158)
334 1zgk_A Kelch-like ECH-associat 79.5 23 0.00078 28.6 16.7 64 21-86 70-149 (308)
335 3a9g_A Putative uncharacterize 79.2 27 0.00091 29.1 22.6 63 148-210 260-330 (354)
336 4asc_A Kelch repeat and BTB do 77.7 26 0.0009 28.3 23.8 65 157-224 148-223 (315)
337 3ei3_A DNA damage-binding prot 77.6 59 0.002 32.2 28.7 65 23-88 524-596 (1158)
338 3s25_A Hypothetical 7-bladed b 75.6 31 0.0011 28.0 17.6 89 153-252 110-203 (302)
339 2zwa_A Leucine carboxyl methyl 75.6 50 0.0017 30.5 18.3 66 20-85 396-479 (695)
340 4fhn_B Nucleoporin NUP120; pro 74.1 11 0.00037 37.3 8.5 37 55-91 240-276 (1139)
341 3f7f_A Nucleoporin NUP120; nuc 72.6 6.6 0.00023 36.3 6.1 37 193-231 223-259 (729)
342 4fhn_B Nucleoporin NUP120; pro 72.5 3.2 0.00011 41.0 4.4 37 194-230 240-276 (1139)
343 4asc_A Kelch repeat and BTB do 72.5 36 0.0012 27.4 19.7 65 19-85 43-128 (315)
344 3zwu_A Alkaline phosphatase PH 68.8 21 0.00073 32.2 8.6 57 13-69 478-547 (592)
345 3sbq_A Nitrous-oxide reductase 68.0 36 0.0012 30.7 9.5 69 150-222 326-408 (638)
346 3f7f_A Nucleoporin NUP120; nuc 65.6 10 0.00035 35.1 5.9 36 12-49 223-258 (729)
347 4a9v_A PHOX; hydrolase, beta-p 63.5 44 0.0015 30.1 9.3 60 11-70 476-548 (592)
348 2uvk_A YJHT; unknown function, 62.1 64 0.0022 26.4 16.0 63 21-85 19-97 (357)
349 3sbq_A Nitrous-oxide reductase 59.9 18 0.0006 32.6 6.0 73 11-84 323-409 (638)
350 3s94_A LRP-6, low-density lipo 58.3 1.1E+02 0.0037 27.8 26.1 200 11-224 349-553 (619)
351 1xi4_A Clathrin heavy chain; a 53.3 68 0.0023 32.7 9.4 125 165-307 45-169 (1630)
352 2woz_A Kelch repeat and BTB do 52.7 88 0.003 25.1 23.0 66 156-224 157-233 (318)
353 2wg3_C Hedgehog-interacting pr 52.3 1.2E+02 0.004 26.4 13.5 105 10-114 13-159 (463)
354 2woz_A Kelch repeat and BTB do 38.3 1.5E+02 0.0051 23.6 19.9 66 19-86 54-139 (318)
355 4a9v_A PHOX; hydrolase, beta-p 36.8 2E+02 0.0068 25.9 9.1 60 192-251 476-549 (592)
356 3zwu_A Alkaline phosphatase PH 34.0 1.6E+02 0.0054 26.6 8.2 58 150-209 479-548 (592)
357 3tvt_B PINS, partner of inscut 31.0 14 0.00049 19.7 0.5 14 290-303 29-42 (50)
358 3s25_A Hypothetical 7-bladed b 27.2 2.4E+02 0.0083 22.6 19.5 60 155-222 192-255 (302)
359 1q47_A Semaphorin 3A; beta pro 20.7 3.7E+02 0.013 23.5 8.0 56 23-78 422-487 (495)
360 4hvt_A Ritya.17583.B, post-pro 20.6 5.1E+02 0.017 23.9 17.5 96 167-264 319-429 (711)
No 1
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.7e-42 Score=297.81 Aligned_cols=274 Identities=19% Similarity=0.319 Sum_probs=230.7
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
.+|++|.+.|++++|+|++++|++|+.|+.|+|||..+++.+..+..|...|.+++|+|+++++++|+.|+.|++||+.+
T Consensus 49 ~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~ 128 (340)
T 1got_B 49 RTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred eeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred Ce----EEEEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399 84 GA----QLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (313)
Q Consensus 84 ~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (313)
.+ ....+ .+...+..+.|.+++.++....+... .+|++ ..+..+..+.+|.+.|.++.|+|++
T Consensus 129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i------~~wd~------~~~~~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 129 REGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTC------ALWDI------ETGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp CSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCE------EEEET------TTTEEEEEECCCSSCEEEEEECTTS
T ss_pred CCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcE------EEEEC------CCCcEEEEEcCCCCceEEEEECCCC
Confidence 53 22222 34567788888888887766655433 33332 2345667788999999999999999
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC---Cce
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---RPV 235 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~ 235 (313)
+++++|+.|+.|++||++++.++..+. +|...|++++|+|++++|++|+.||+|++||+++++.+..+.+. ..+
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~---~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v 273 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGI 273 (340)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCE
T ss_pred CEEEEEeCCCcEEEEECCCCeeEEEEc---CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccce
Confidence 999999999999999999888776553 68899999999999999999999999999999999888777543 368
Q ss_pred eEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
.+++|+|++..+++++. + . .+++||..+.+.+..+.+|.++|++++|+|||+.++..
T Consensus 274 ~~~~~s~~g~~l~~g~~-d-~------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 330 (340)
T 1got_B 274 TSVSFSKSGRLLLAGYD-D-F------------NCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330 (340)
T ss_dssp EEEEECTTSSEEEEEET-T-S------------EEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEE
T ss_pred EEEEECCCCCEEEEECC-C-C------------eEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEE
Confidence 99999999988776543 2 2 34567766666667788999999999999999998754
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.8e-42 Score=302.30 Aligned_cols=274 Identities=22% Similarity=0.286 Sum_probs=232.4
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
..|.+|..+|++++|+|++++|++|+.|+.|+|||..+++...++++|.+.|.+++|+|++++|++|+.|++|++||+.+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEec-CCCCeeEEEeecCCeEE-EEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 84 GAQLFTFN-FDSPARSVDFAVGDKLA-VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
++++..+. +...+.++.|.|++..+ .++.+. .+.+|++. .+..+..+.+|...+..+.++|++.++
T Consensus 182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~------~i~~wd~~------~~~~~~~~~~h~~~v~~~~~~~~g~~l 249 (410)
T 1vyh_C 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK------TIKMWEVQ------TGYCVKTFTGHREWVRMVRPNQDGTLI 249 (410)
T ss_dssp SCEEECCCCCSSCEEEEEECSSSSEEEEEETTS------EEEEEETT------TCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCC------eEEEEECC------CCcEEEEEeCCCccEEEEEECCCCCEE
Confidence 88876654 45678899999876544 444443 23344332 245667788999999999999999999
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC--------------------CCEEEEeeCCCcEEEEECC
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD--------------------GSHFLTGSLDKSAKLWDAR 221 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~--------------------~~~l~s~s~dg~i~iwd~~ 221 (313)
++|+.|+.|++||+.++.+...+. +|...|.+++|+|+ +.+|++|+.|++|++||++
T Consensus 250 ~s~s~D~~v~vwd~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~ 326 (410)
T 1vyh_C 250 ASCSNDQTVRVWVVATKECKAELR---EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326 (410)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETT
T ss_pred EEEcCCCeEEEEECCCCceeeEec---CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence 999999999999999887766553 68899999999996 6789999999999999999
Q ss_pred CCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCC
Q 021399 222 TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300 (313)
Q Consensus 222 ~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg 300 (313)
+++++.++. +...+.+++|+|++..+++++. |+ .+++||..+++.+..+.+|...|++++|+|++
T Consensus 327 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-D~-------------~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 392 (410)
T 1vyh_C 327 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCAD-DK-------------TLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 392 (410)
T ss_dssp TTEEEEEEECCSSCEEEEEECSSSSCEEEEET-TT-------------EEEEECCTTSCCCEEEECCSSCEEEEEECSSS
T ss_pred CCceEEEEECCCCcEEEEEEcCCCCEEEEEeC-CC-------------eEEEEECCCCceEEEEcCCCCcEEEEEEcCCC
Confidence 999998886 4567999999999988776543 32 35667776677777788999999999999999
Q ss_pred CeeEEE
Q 021399 301 KRYGFL 306 (313)
Q Consensus 301 k~~~~~ 306 (313)
+.++..
T Consensus 393 ~~l~sg 398 (410)
T 1vyh_C 393 PYVVTG 398 (410)
T ss_dssp SCEEEE
T ss_pred CEEEEE
Confidence 987653
No 3
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-41 Score=293.16 Aligned_cols=302 Identities=39% Similarity=0.689 Sum_probs=246.8
Q ss_pred CcccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399 2 RPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 2 ~~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
+++.|.+|.+.|.+++|+|++++|++++.|+.|++||+.+++.+.++.+|.+.|.+++|+|++++|++++.|++|++||+
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCC-----CCceEEEecCCCC--ceEEEEE
Q 021399 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ-----GGESVLILKGPQG--RINRAVW 154 (313)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~i~~~~~ 154 (313)
.+++.+..+....++..+.|.+++..++............+.++++....... .......+..|.+ .+..+.|
T Consensus 104 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (369)
T 3zwl_B 104 SNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGW 183 (369)
T ss_dssp TTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEE
T ss_pred CCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEE
Confidence 99998888888888999999998777666544321222334445544322111 1122334445555 8999999
Q ss_pred ccCCCEEEEeeCCCeEEEEECCC-CceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC
Q 021399 155 GPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233 (313)
Q Consensus 155 ~~~~~~i~t~~~d~~i~lwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 233 (313)
+|+++.+++++.|+.|++||+.+ .+.+..+. .|...|.+++|+|++.+|++++.|+.|++||+++++++..+....
T Consensus 184 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~ 260 (369)
T 3zwl_B 184 STKGKYIIAGHKDGKISKYDVSNNYEYVDSID---LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDC 260 (369)
T ss_dssp CGGGCEEEEEETTSEEEEEETTTTTEEEEEEE---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred cCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe---cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCC
Confidence 99999999999999999999988 55555443 588899999999999999999999999999999999999998888
Q ss_pred ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
.+..++|+|++..++++++++...+...+...+...+++||..+++.+..+.+|.+.|++++|+|||+.++..
T Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 333 (369)
T 3zwl_B 261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASG 333 (369)
T ss_dssp CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEE
Confidence 9999999999999999887776667667777777789999999888888999999999999999999988765
No 4
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-41 Score=289.29 Aligned_cols=274 Identities=21% Similarity=0.291 Sum_probs=226.1
Q ss_pred cccccccceeEEEEccC----CCEEEEeeCCCCeEEEeCCCCcE--EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399 5 LMKGHERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~----g~~l~s~s~d~~i~iw~~~~~~~--~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~v 78 (313)
.+++|.+.|++++|+|+ +++|+||+.|++|+||+..+++. ...+++|...|.+++|++++.+++|++.|++|++
T Consensus 27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~l 106 (321)
T 3ow8_A 27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRL 106 (321)
T ss_dssp ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEE
Confidence 46799999999999985 67999999999999999887753 5578999999999999999999999999999999
Q ss_pred EECCCCeEEEEecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399 79 WNVETGAQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (313)
Q Consensus 79 Wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (313)
||+.+++.+..+.. ...+..+.|+|++..++.... .+.+.++++ ..+.....+..+...+.+++|+|+
T Consensus 107 Wd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~-----dg~v~i~~~------~~~~~~~~~~~~~~~v~~~~~spd 175 (321)
T 3ow8_A 107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH-----VGKVNIFGV------ESGKKEYSLDTRGKFILSIAYSPD 175 (321)
T ss_dssp EETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT-----TSEEEEEET------TTCSEEEEEECSSSCEEEEEECTT
T ss_pred EECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC-----CCcEEEEEc------CCCceeEEecCCCceEEEEEECCC
Confidence 99999988776653 446677889987766655432 122233332 123455667778888999999999
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCcee
Q 021399 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVN 236 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~ 236 (313)
++++++|+.|+.|++||+.+++++..+. +|...|.+++|+|++.+|++|+.|++|++||+++++++.++. +...+.
T Consensus 176 g~~lasg~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~ 252 (321)
T 3ow8_A 176 GKYLASGAIDGIINIFDIATGKLLHTLE---GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVL 252 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEc---ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceE
Confidence 9999999999999999999988776653 688999999999999999999999999999999999888876 456799
Q ss_pred EEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 237 AVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
+++|+|++..+++++. |+ .+++||..+++++..+.+|.+.|++++|+|||++++..
T Consensus 253 ~~~~sp~~~~l~s~s~-D~-------------~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~ 308 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSS-DK-------------SVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSV 308 (321)
T ss_dssp EEEECTTSSEEEEEET-TS-------------CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeC-CC-------------cEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEE
Confidence 9999999988766543 32 35678877777888888999999999999999987754
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.6e-41 Score=287.20 Aligned_cols=272 Identities=15% Similarity=0.208 Sum_probs=225.9
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
.++.+|.+.|.+++|+|++++|++++.|+.|++||+++++.+..+.+|..+|.+++|+|+++++++|+.|++|++||+.+
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~ 86 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc-CCCE
Q 021399 84 GAQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRT 160 (313)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~ 160 (313)
++.+..+. +...+.++.|+|++..++. +.+. .+++|++.. .......+.+|...|.+++|+| ++..
T Consensus 87 ~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~------~v~lWd~~~-----~~~~~~~~~~h~~~v~~v~~~p~~~~~ 155 (304)
T 2ynn_A 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDL------TVKLWNWEN-----NWALEQTFEGHEHFVMCVAFNPKDPST 155 (304)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEETTS------CEEEEEGGG-----TTEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred CcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCC------eEEEEECCC-----CcchhhhhcccCCcEEEEEECCCCCCE
Confidence 98877665 4667899999997765544 3333 334444321 1234456789999999999999 5689
Q ss_pred EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC--CCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeE
Q 021399 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA 237 (313)
Q Consensus 161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~ 237 (313)
+++|+.|+.|++||+.+......+. .+|...+..++++| ++.+|++|+.|++|++||+++++++.++. +...+.+
T Consensus 156 l~sgs~D~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~ 233 (304)
T 2ynn_A 156 FASGCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSF 233 (304)
T ss_dssp EEEEETTSEEEEEETTCSSCSEEEE--CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred EEEEeCCCeEEEEECCCCCccceec--cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEE
Confidence 9999999999999998766543332 34667788888876 77899999999999999999999998886 4567999
Q ss_pred EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302 (313)
Q Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~ 302 (313)
++|+|+++.+++++ .|+ .+++||..+++.+..+..|.+.|++++|+|+|+.
T Consensus 234 ~~~~p~~~~l~s~s-~Dg-------------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (304)
T 2ynn_A 234 AVFHPTLPIIISGS-EDG-------------TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRK 284 (304)
T ss_dssp EEECSSSSEEEEEE-TTS-------------CEEEEETTTCCEEEEECCSSSSEEEEEECTTCGG
T ss_pred EEECCCCCEEEEEc-CCC-------------eEEEEECCCCceeeeccCCCccEEEEEECCCCCc
Confidence 99999998766543 332 3567777777777788889999999999999874
No 6
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.2e-40 Score=286.24 Aligned_cols=274 Identities=18% Similarity=0.270 Sum_probs=224.8
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
.+|.+|.+.|++++|+|++++|+||+.|++|+|||..+++....+..|...|.+++|+|+++.+++|+.|+++++|++..
T Consensus 58 ~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~ 137 (354)
T 2pbi_B 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF 137 (354)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred EEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred Ce-------EEEEecCCCCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399 84 GA-------QLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (313)
Q Consensus 84 ~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (313)
.. ......+...+..+.|.+++. ++.++.+. .+.+|++ ..+..+..+.+|...+..+.++
T Consensus 138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~------~v~lwd~------~~~~~~~~~~~h~~~v~~~~~~ 205 (354)
T 2pbi_B 138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDG------TCALWDV------ESGQLLQSFHGHGADVLCLDLA 205 (354)
T ss_dssp CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTS------EEEEEET------TTCCEEEEEECCSSCEEEEEEC
T ss_pred cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCC------cEEEEeC------CCCeEEEEEcCCCCCeEEEEEE
Confidence 31 112223556778888888664 44444443 3344443 2345677888999999999998
Q ss_pred c--CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC-
Q 021399 156 P--LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE- 232 (313)
Q Consensus 156 ~--~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~- 232 (313)
| +++.|++|+.|+.|++||+++++++..+. +|...|.+++|+|++++|++|+.|++|++||+++.+.+..+...
T Consensus 206 ~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~---~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~ 282 (354)
T 2pbi_B 206 PSETGNTFVSGGCDKKAMVWDMRSGQCVQAFE---THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES 282 (354)
T ss_dssp CCSSCCEEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTT
T ss_pred eCCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCC
Confidence 7 46899999999999999999988776653 68899999999999999999999999999999998877766432
Q ss_pred --CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 233 --RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 233 --~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
..+.+++|+|++..+++++. |+ .+++||..+++.+..+.+|.++|++++|+|||+.|+..
T Consensus 283 ~~~~~~~~~~s~~g~~l~~g~~-d~-------------~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sg 344 (354)
T 2pbi_B 283 IIFGASSVDFSLSGRLLFAGYN-DY-------------TINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSG 344 (354)
T ss_dssp CCSCEEEEEECTTSSEEEEEET-TS-------------CEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred cccceeEEEEeCCCCEEEEEEC-CC-------------cEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEE
Confidence 35789999999987776543 22 35667766666667788999999999999999998764
No 7
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.5e-40 Score=281.81 Aligned_cols=279 Identities=24% Similarity=0.339 Sum_probs=219.8
Q ss_pred cccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCC-----CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399 5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADN-----GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~-----~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~v 78 (313)
+|.+|.+.|.+++|+|++ ++|+||+.|++|++|++.. +..+.++++|...|.+++|+|++++++||+.|++|++
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~ 91 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRL 91 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEE
Confidence 688999999999999965 8999999999999998764 3457789999999999999999999999999999999
Q ss_pred EECCCCeEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 79 Wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
||+.+++.+..+. +..++.++.|.++...++. +.+.. +++|++ .+..+..+.+|...+..+.+.|
T Consensus 92 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~------i~vwd~-------~~~~~~~~~~h~~~v~~~~~~~ 158 (319)
T 3frx_A 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKT------IKVWTI-------KGQCLATLLGHNDWVSQVRVVP 158 (319)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSC------EEEEET-------TSCEEEEECCCSSCEEEEEECC
T ss_pred EECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCe------EEEEEC-------CCCeEEEEeccCCcEEEEEEcc
Confidence 9999998877664 5678889999987655444 33433 334433 1345667788999999999998
Q ss_pred CC------CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 157 LN------RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 157 ~~------~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
.. ..+++++.|+.|++||+++.+....+ .+|...|.+++|+|++.+|++|+.||+|++||+++++++.++.
T Consensus 159 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~ 235 (319)
T 3frx_A 159 NEKADDDSVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235 (319)
T ss_dssp C------CCEEEEEETTSCEEEEETTTTEEEEEE---CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred CCCCCCCccEEEEEeCCCEEEEEECCcchhheee---cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec
Confidence 54 48999999999999999987766554 3699999999999999999999999999999999999999988
Q ss_pred cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
....+.+++|+|++..++++.. ++ +.+|+...+... ..+ ..........|...|.+++|||||++++.-
T Consensus 236 ~~~~v~~~~~sp~~~~la~~~~-~~--i~v~~~~~~~~~-~~~---~~~~~~~~~~~~~~v~~~~~spdg~~l~sg 304 (319)
T 3frx_A 236 AQDEVFSLAFSPNRYWLAAATA-TG--IKVFSLDPQYLV-DDL---RPEFAGYSKAAEPHAVSLAWSADGQTLFAG 304 (319)
T ss_dssp CCSCEEEEEECSSSSEEEEEET-TE--EEEEEETTEEEE-EEE---CCCCTTCCGGGCCCEEEEEECTTSSEEEEE
T ss_pred CCCcEEEEEEcCCCCEEEEEcC-CC--cEEEEeCcCeee-ecc---CccccccccCcCcceeEEEECCCCCEEEEe
Confidence 8888999999999987766543 22 333333221110 000 011111234577889999999999998753
No 8
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=6e-39 Score=272.17 Aligned_cols=275 Identities=23% Similarity=0.358 Sum_probs=224.6
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
.+.+|.++|.+++|+|++++|++++.|+.|++|+..+++....+.+|...|.+++|+|++++|++++.|++|++||+.++
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~ 97 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 97 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 85 AQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
+.+..+. +...+..+.|.+++..++. ..+. .+.++++. .+..+..+..|...+..+.|+|++++++
T Consensus 98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~------~i~iwd~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDE------SVRIWDVK------TGKCLKTLPAHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSEEEEEETTS------CEEEEETT------TCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC------cEEEEECC------CCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 8877665 4567888899987655544 3333 23344332 2345667788999999999999999999
Q ss_pred EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC-c--eeEEE
Q 021399 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-P--VNAVT 239 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~--~~~~~ 239 (313)
+++.|+.|++||+.+++.+..+. ..+...+..++|+|++++|++++.|+.|++||+++++++..+.... . .....
T Consensus 166 ~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 243 (312)
T 4ery_A 166 SSSYDGLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN 243 (312)
T ss_dssp EEETTSCEEEEETTTCCEEEEEC--CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEE
T ss_pred EEeCCCcEEEEECCCCceeeEEe--ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEE
Confidence 99999999999999888766543 2466789999999999999999999999999999999988875322 1 22344
Q ss_pred eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
+++.....+++++.|+ .+++||..+++.+..+.+|...|.+++|+|+++.++..
T Consensus 244 ~~~~~~~~l~sg~~dg-------------~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~ 297 (312)
T 4ery_A 244 FSVTGGKWIVSGSEDN-------------LVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 297 (312)
T ss_dssp EECSSSCEEEECCTTS-------------CEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEE
T ss_pred EEeCCCcEEEEECCCC-------------EEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEE
Confidence 5544444455555443 35667777777777888999999999999999998765
No 9
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.4e-40 Score=290.18 Aligned_cols=273 Identities=22% Similarity=0.319 Sum_probs=210.0
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
.+|++|.+.|++++|+|++++|+||+.|++|+|||..+++...++++|...|.+++|+|+++++++|+.|+++++||+.+
T Consensus 60 ~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~ 139 (380)
T 3iz6_a 60 RTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS 139 (380)
T ss_dssp EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCC
T ss_pred ecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CeE-------EEEe-cCCCCeeEEEeecC--CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe-----cCCCCc
Q 021399 84 GAQ-------LFTF-NFDSPARSVDFAVG--DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-----KGPQGR 148 (313)
Q Consensus 84 ~~~-------~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 148 (313)
... ...+ .+...+..+.|.+. ..++.++.+... .+|++. .+..+..+ .+|...
T Consensus 140 ~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i------~~wd~~------~~~~~~~~~~~~~~~h~~~ 207 (380)
T 3iz6_a 140 QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTC------VLWDVT------TGQRISIFGSEFPSGHTAD 207 (380)
T ss_dssp CSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCE------EEECTT------TCCEEEEECCCSSSSCCSC
T ss_pred CccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcE------EEEEcC------CCcEEEEeecccCCCCccC
Confidence 321 1111 12334555666663 234444444333 333321 22333333 578889
Q ss_pred eEEEEEcc-CCCEEEEeeCCCeEEEEECCC-CceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE
Q 021399 149 INRAVWGP-LNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226 (313)
Q Consensus 149 i~~~~~~~-~~~~i~t~~~d~~i~lwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 226 (313)
+.++.+++ +++.+++|+.|+.|++||++. +..+..+ .+|...|.+++|+|++++|++|+.||+|++||+++++++
T Consensus 208 v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~ 284 (380)
T 3iz6_a 208 VLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY---HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284 (380)
T ss_dssp EEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE---CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEE
T ss_pred eEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE---CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEE
Confidence 99999976 788999999999999999974 3444443 369999999999999999999999999999999999988
Q ss_pred EEEecC--------CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccc----cccccceeEE
Q 021399 227 KTYVTE--------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV----KGHFGPINAL 294 (313)
Q Consensus 227 ~~~~~~--------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~V~~~ 294 (313)
..+... ..+.+++|+|++..+++++. + +.+.+|| ...++.+..+ .+|.++|+++
T Consensus 285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-d-g~i~vwd------------~~~~~~~~~~~~~~~~h~~~v~~l 350 (380)
T 3iz6_a 285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-N-GDCYVWD------------TLLAEMVLNLGTLQNSHEGRISCL 350 (380)
T ss_dssp EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-T-SCEEEEE------------TTTCCEEEEECCSCSSCCCCCCEE
T ss_pred EEecccccccccccCceEEEEECCCCCEEEEEEC-C-CCEEEEE------------CCCCceEEEEecccCCCCCceEEE
Confidence 877532 13789999999998776543 2 3344444 4333332222 5899999999
Q ss_pred EECCCCCeeEE
Q 021399 295 AFNPDGKRYGF 305 (313)
Q Consensus 295 ~fspdgk~~~~ 305 (313)
+|+|||+.++.
T Consensus 351 ~~s~dg~~l~s 361 (380)
T 3iz6_a 351 GLSSDGSALCT 361 (380)
T ss_dssp EECSSSSEEEE
T ss_pred EECCCCCEEEE
Confidence 99999998765
No 10
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.5e-38 Score=272.07 Aligned_cols=282 Identities=22% Similarity=0.304 Sum_probs=211.1
Q ss_pred cccccccceeEEEE-----cc-CCCEEEEeeCCCCeEEEeCCCC-------cEEEEecCCCCceEEEEECCCCCeEEEee
Q 021399 5 LMKGHERPLTYLKY-----NK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDSMTLITGS 71 (313)
Q Consensus 5 ~l~~h~~~v~~~~f-----s~-~g~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~H~~~V~~~~~~~~~~~l~s~s 71 (313)
+|++|.+.|++++| ++ ++++|+||+.|++|++||+.+. .....+.+|...|.+++|+|++++++||+
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s 95 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEc
Confidence 68999999999999 76 9999999999999999998753 45678999999999999999999999999
Q ss_pred CCCcEEEEECCCCeEEEEec-CCCCeeEEEeecCCeEEE-EECCCceeccccceeeeeeeCCCCCCCceEEEe---cCCC
Q 021399 72 ADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLIL---KGPQ 146 (313)
Q Consensus 72 ~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 146 (313)
.|++|++||+++++.+..+. +...+.++.|+|++..++ +..+.. +.+|++. +...... .+|.
T Consensus 96 ~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~------i~~wd~~-------~~~~~~~~~~~~~~ 162 (343)
T 2xzm_R 96 WDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAERE------IKLWNIL-------GECKFSSAEKENHS 162 (343)
T ss_dssp TTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSC------EEEEESS-------SCEEEECCTTTSCS
T ss_pred CCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCE------EEEEecc-------CCceeeeecccCCC
Confidence 99999999999998876664 567889999998765444 444433 3334331 1111122 2677
Q ss_pred CceEEEEEccCC----------CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEE
Q 021399 147 GRINRAVWGPLN----------RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 216 (313)
Q Consensus 147 ~~i~~~~~~~~~----------~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~ 216 (313)
..+.++.|+|.+ .++++++.|+.|++||.. ......+ .+|...|.+++|+|+|++|++|+.||+|+
T Consensus 163 ~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~---~~h~~~v~~~~~s~~g~~l~sgs~dg~v~ 238 (343)
T 2xzm_R 163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTF---KAHESNVNHLSISPNGKYIATGGKDKKLL 238 (343)
T ss_dssp SCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEE---ECCSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred ceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEE---cCccccceEEEECCCCCEEEEEcCCCeEE
Confidence 889999999886 789999999999999954 3333333 36889999999999999999999999999
Q ss_pred EEECC-CCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceee-eeeehhhhhhhccccccccceeEE
Q 021399 217 LWDAR-TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA-KFFDKILQEEIGGVKGHFGPINAL 294 (313)
Q Consensus 217 iwd~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~V~~~ 294 (313)
+||++ ...+...+.....+.+++|+|++..++ ++ .+. .+.+|+...+.... ..+............+|...|+++
T Consensus 239 iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la-~~-~d~-~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 315 (343)
T 2xzm_R 239 IWDILNLTYPQREFDAGSTINQIAFNPKLQWVA-VG-TDQ-GVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSL 315 (343)
T ss_dssp EEESSCCSSCSEEEECSSCEEEEEECSSSCEEE-EE-ESS-CEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEE
T ss_pred EEECCCCcccceeecCCCcEEEEEECCCCCEEE-EE-CCC-CEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEE
Confidence 99994 444555555566799999999987554 33 332 35566654432211 011111111122345799999999
Q ss_pred EECCCCCeeEEE
Q 021399 295 AFNPDGKRYGFL 306 (313)
Q Consensus 295 ~fspdgk~~~~~ 306 (313)
+|+|||+.++..
T Consensus 316 ~~sp~g~~l~sg 327 (343)
T 2xzm_R 316 AWNALGKKLFAG 327 (343)
T ss_dssp EECSSSCCEEEE
T ss_pred EECCCCCeEEEe
Confidence 999999988653
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.5e-38 Score=293.67 Aligned_cols=287 Identities=18% Similarity=0.169 Sum_probs=226.9
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
....+.+.+.+++|+|||++|++++ ++.|++|++.+++...++.+|.+.|++++|+|+|++++||+.|++|+|||+.++
T Consensus 13 ~~~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~ 91 (611)
T 1nr0_A 13 LPRTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQT 91 (611)
T ss_dssp CCCCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSST
T ss_pred CCCcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCC
Confidence 4445677788999999999999998 569999999999999999999999999999999999999999999999999654
Q ss_pred e--EEEEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC-E
Q 021399 85 A--QLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-T 160 (313)
Q Consensus 85 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 160 (313)
+ ....+ .+..++..+.|+|+++.++....... ....+..++ .+.....+.+|...|.++.|+|++. .
T Consensus 92 ~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~-~~~~v~~wd--------~~~~~~~l~gh~~~v~~v~f~p~~~~~ 162 (611)
T 1nr0_A 92 THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE-RFGHVFLFD--------TGTSNGNLTGQARAMNSVDFKPSRPFR 162 (611)
T ss_dssp TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS-CSEEEEETT--------TCCBCBCCCCCSSCEEEEEECSSSSCE
T ss_pred cceeeEeecccCCceEEEEECCCCCEEEEEECCCC-ceeEEEEee--------CCCCcceecCCCCCceEEEECCCCCeE
Confidence 3 23333 35678999999998776655432100 001111221 1122334678999999999999986 5
Q ss_pred EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe--------cC
Q 021399 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--------TE 232 (313)
Q Consensus 161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--------~~ 232 (313)
+++|+.|++|++||...+++...+ .+|...|.+++|+|+|++|++++.|++|++||+++++++..+. +.
T Consensus 163 l~s~s~D~~v~lwd~~~~~~~~~l---~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~ 239 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGPPFKFKSTF---GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239 (611)
T ss_dssp EEEEETTSCEEEEETTTBEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred EEEEeCCCeEEEEECCCCeEeeee---ccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccC
Confidence 999999999999999887766554 3799999999999999999999999999999999999988773 55
Q ss_pred CceeEEEeccCCCEEEEcccccCceeEeeccCCCce-------------------------------eeeeeehhhhhhh
Q 021399 233 RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF-------------------------------EAKFFDKILQEEI 281 (313)
Q Consensus 233 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~ 281 (313)
..+.+++|+|++..+++++. +..+.+||.+.++. .+++|+...++..
T Consensus 240 ~~V~~v~~spdg~~l~s~s~--D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~ 317 (611)
T 1nr0_A 240 GSVFGLTWSPDGTKIASASA--DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSID 317 (611)
T ss_dssp SCEEEEEECTTSSEEEEEET--TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEE
T ss_pred CCEEEEEECCCCCEEEEEeC--CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcc
Confidence 67999999999988776543 34577788665432 2456776665566
Q ss_pred ccccccccceeEEEECCCCCeeEEE
Q 021399 282 GGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 282 ~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
..+.+|..+|++++|+|||++++..
T Consensus 318 ~~~~gh~~~v~~l~~spdg~~l~s~ 342 (611)
T 1nr0_A 318 QVRYGHNKAITALSSSADGKTLFSA 342 (611)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEE
T ss_pred eEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 6778999999999999999988753
No 12
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.7e-38 Score=288.55 Aligned_cols=288 Identities=15% Similarity=0.156 Sum_probs=218.4
Q ss_pred cccccccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
.+.+|.+.|.+++|+|+++ .|++|+.|++|++||..+++.+.++.+|.+.|.+++|+|++++|+||+.|++|++||+.+
T Consensus 142 ~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~ 221 (611)
T 1nr0_A 142 NLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVD 221 (611)
T ss_dssp CCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred eecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCC
Confidence 5789999999999999997 699999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEe--------cCCCCeeEEEeecCCeEE-EEECCCceeccccc---eeeeeeeC-------------C-------
Q 021399 84 GAQLFTF--------NFDSPARSVDFAVGDKLA-VITTDPFMELNSAI---HVKRIARD-------------P------- 131 (313)
Q Consensus 84 ~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~-------------~------- 131 (313)
++.+..+ .+...+..+.|+|++..+ .++.+....++... ....+... .
T Consensus 222 g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s 301 (611)
T 1nr0_A 222 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 301 (611)
T ss_dssp CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE
T ss_pred CcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEe
Confidence 8887766 355678899999876544 44445443332211 00000000 0
Q ss_pred --------CCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeeccc-----------------
Q 021399 132 --------ADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK----------------- 186 (313)
Q Consensus 132 --------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~----------------- 186 (313)
....+.....+.+|...|.+++|+|+++++++++.|+.|++||+.++.....+..
T Consensus 302 ~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l 381 (611)
T 1nr0_A 302 ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL 381 (611)
T ss_dssp TTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred CCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence 0011234456678999999999999999999999999999999987654322100
Q ss_pred ---------------------------------------cc-----------------------CceeceEEEEECCCCC
Q 021399 187 ---------------------------------------ET-----------------------GHKKTITSLAKAADGS 204 (313)
Q Consensus 187 ---------------------------------------~~-----------------------~h~~~v~~~~~s~~~~ 204 (313)
.. .|...+.+++|+|||+
T Consensus 382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~ 461 (611)
T 1nr0_A 382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ 461 (611)
T ss_dssp EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence 00 0223467899999999
Q ss_pred EEEEeeCCCcEEEEECCCCcE--EEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhh-hhhh
Q 021399 205 HFLTGSLDKSAKLWDARTLEL--IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-QEEI 281 (313)
Q Consensus 205 ~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 281 (313)
+|++|+.|++|++||++++.. +....+...+.+++|+|++..+++++. |. .+++|+..+ ++.+
T Consensus 462 ~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~-d~-------------~v~~w~~~~~~~~~ 527 (611)
T 1nr0_A 462 FVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ-SR-------------KVIPYSVANNFELA 527 (611)
T ss_dssp EEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET-TS-------------CEEEEEGGGTTEES
T ss_pred EEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcC-CC-------------CEEEEEcCCCCcee
Confidence 999999999999999987643 334446678999999999998776543 22 245666654 3333
Q ss_pred cc--ccccccceeEEEECCCCCeeEEE
Q 021399 282 GG--VKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 282 ~~--~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
.. +.+|...|++++|||||++|+.-
T Consensus 528 ~~~~~~~H~~~V~~v~fspdg~~lasg 554 (611)
T 1nr0_A 528 HTNSWTFHTAKVACVSWSPDNVRLATG 554 (611)
T ss_dssp CCCCCCCCSSCEEEEEECTTSSEEEEE
T ss_pred eeeeeeecccceeEEEECCCCCEEEEE
Confidence 32 34599999999999999998763
No 13
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.1e-39 Score=274.75 Aligned_cols=228 Identities=18% Similarity=0.227 Sum_probs=184.0
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE----EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG----TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~----~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
.|...|.+++|+|++ .|++|+.||.|+|||+++++.+. .+.+|.+.|++++|+|++++|+||+.|++|++||+++
T Consensus 80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~ 158 (344)
T 4gqb_B 80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ 158 (344)
T ss_dssp EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence 456789999999985 78899999999999999887544 3458999999999999999999999999999999987
Q ss_pred CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC-EEE
Q 021399 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TII 162 (313)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~i~ 162 (313)
++.+. .+.+|.+.|.++.|+|++. .++
T Consensus 159 ~~~~~----------------------------------------------------~~~~h~~~V~~~~~~~~~~~~l~ 186 (344)
T 4gqb_B 159 QVVLS----------------------------------------------------SYRAHAAQVTCVAASPHKDSVFL 186 (344)
T ss_dssp TEEEE----------------------------------------------------EECCCSSCEEEEEECSSCTTEEE
T ss_pred CcEEE----------------------------------------------------EEcCcCCceEEEEecCCCCCcee
Confidence 75432 3356788899999999874 689
Q ss_pred EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC-CCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEe
Q 021399 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTM 240 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~ 240 (313)
+++.|+.|++||+++++....+.. ..|...+.+++|+|+ +.+|++|+.||+|++||+++++++.++. +...+.+++|
T Consensus 187 s~s~D~~v~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~f 265 (344)
T 4gqb_B 187 SCSEDNRILLWDTRCPKPASQIGC-SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVF 265 (344)
T ss_dssp EEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEE
T ss_pred eeccccccccccccccceeeeeec-ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEE
Confidence 999999999999999887766532 346678999999985 5688999999999999999999988886 4668999999
Q ss_pred ccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY 303 (313)
Q Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~ 303 (313)
+|++..++++++.|. . +++||..+++. ..+.+|.+.|++++|||+|+.+
T Consensus 266 sp~g~~~lasgs~D~-~------------i~vwd~~~~~~-~~~~~H~~~V~~v~~sp~~~~l 314 (344)
T 4gqb_B 266 SPHSVPFLASLSEDC-S------------LAVLDSSLSEL-FRSQAHRDFVRDATWSPLNHSL 314 (344)
T ss_dssp CSSSSCCEEEEETTS-C------------EEEECTTCCEE-EEECCCSSCEEEEEECSSSTTE
T ss_pred ccCCCeEEEEEeCCC-e------------EEEEECCCCcE-EEEcCCCCCEEEEEEeCCCCeE
Confidence 999876666665553 2 34555544433 3467899999999999999863
No 14
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.3e-38 Score=269.45 Aligned_cols=286 Identities=21% Similarity=0.310 Sum_probs=210.8
Q ss_pred ccccccc-ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEE--E-EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399 5 LMKGHER-PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL--G-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (313)
Q Consensus 5 ~l~~h~~-~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~--~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd 80 (313)
.|.+|.+ .|++++|+|+|++|++|+.|+.|+|||.+++... . ...+|...|.+++|+|++++|++|+.|+++++||
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~ 89 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK 89 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEE
Confidence 6789988 8999999999999999999999999999887643 2 2368999999999999999999999999999999
Q ss_pred CCCCe--EEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 81 VETGA--QLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 81 ~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
+.++. .+..+. +..++.++.|+|++..++. +.+. .+.+|++... .....+..+.+|...|..+.|+|
T Consensus 90 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~---~~~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 90 KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEE---DEYECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp ECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEEECTT---SCEEEEEEECCCCSCEEEEEECS
T ss_pred ccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC------eEEEEECCCC---CCeEEEEEecCcCCCeEEEEECC
Confidence 98764 333443 4568899999987665544 3333 3444444321 11234556788999999999999
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC-------------
Q 021399 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL------------- 223 (313)
Q Consensus 157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~------------- 223 (313)
+++++++++.|+.|++||...+..... ....+|...|++++|+|+|++|++++.|++|++||....
T Consensus 161 ~~~~l~s~s~d~~i~~w~~~~~~~~~~-~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~ 239 (345)
T 3fm0_A 161 SQELLASASYDDTVKLYREEEDDWVCC-ATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDP 239 (345)
T ss_dssp SSSCEEEEETTSCEEEEEEETTEEEEE-EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---C
T ss_pred CCCEEEEEeCCCcEEEEEecCCCEEEE-EEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCC
Confidence 999999999999999999877653221 122479999999999999999999999999999996321
Q ss_pred --cEEEEEe--cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceee-eeeehhhhhhhccccccccceeEEEECC
Q 021399 224 --ELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEA-KFFDKILQEEIGGVKGHFGPINALAFNP 298 (313)
Q Consensus 224 --~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~V~~~~fsp 298 (313)
+++.++. +...+.+++|+|++..+++++++. .+.+|+...+.... ..+ ........+|.+.|++++|+|
T Consensus 240 ~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~--~i~vw~~~~~~~~~~~~~----~~~~~~~~~h~~~V~~v~~~p 313 (345)
T 3fm0_A 240 SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDD--AIRVFQEDPNSDPQQPTF----SLTAHLHQAHSQDVNCVAWNP 313 (345)
T ss_dssp EEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTS--CEEEEEECTTSCTTSCCE----EEEEEETTSSSSCEEEEEECS
T ss_pred ccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCC--eEEEEEeCCCCCcceeeE----EEEeeecccccCcEeEeEEeC
Confidence 2333332 456799999999999887765543 23333322111000 000 000122458999999999999
Q ss_pred CCC-eeEEE
Q 021399 299 DGK-RYGFL 306 (313)
Q Consensus 299 dgk-~~~~~ 306 (313)
++. .||..
T Consensus 314 ~~~~~laS~ 322 (345)
T 3fm0_A 314 KEPGLLASC 322 (345)
T ss_dssp SSTTEEEEE
T ss_pred CCceEEEEc
Confidence 985 66654
No 15
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.7e-37 Score=263.49 Aligned_cols=281 Identities=21% Similarity=0.282 Sum_probs=212.8
Q ss_pred cccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCc-----EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399 5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGE-----RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~-----~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~v 78 (313)
+|+||.+.|++|+|+|+ +++|+|||.|++|+|||+.+.+ ...++++|...|.+++|+|+++++++++.|+.|++
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~ 112 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence 68999999999999998 6899999999999999987653 56788999999999999999999999999999999
Q ss_pred EECCCCeEEEEecC-CCCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 79 WNVETGAQLFTFNF-DSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 79 Wd~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
|+............ ........+.+... ++.+..+.... +++.. ..........+|...+..+.|++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~------~~d~~-----~~~~~~~~~~~~~~~v~~~~~~~ 181 (340)
T 4aow_A 113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK------LWNTL-----GVCKYTVQDESHSEWVSCVRFSP 181 (340)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE------EECTT-----SCEEEEECSSSCSSCEEEEEECS
T ss_pred EeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEE------EEEeC-----CCceEEEEeccccCcccceEEcc
Confidence 99998876655543 34455555665444 44444433322 22111 11223344567888899999987
Q ss_pred CC--CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCc
Q 021399 157 LN--RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP 234 (313)
Q Consensus 157 ~~--~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~ 234 (313)
.+ ..+++++.|+.|++||+.+++.+..+. +|...|++++|+|++++|++|+.|+.|++||+++.+++..+.....
T Consensus 182 ~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~ 258 (340)
T 4aow_A 182 NSSNPIIVSCGWDKLVKVWNLANCKLKTNHI---GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDI 258 (340)
T ss_dssp CSSSCEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSC
T ss_pred CCCCcEEEEEcCCCEEEEEECCCCceeeEec---CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCce
Confidence 64 578899999999999999988776553 6889999999999999999999999999999999999999988889
Q ss_pred eeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 235 VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 235 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
+.+++|+|.+..+ +++ . +..+.+||.+.+.....+ ..........+|...|++++|+|||+.++-
T Consensus 259 v~~~~~~~~~~~~-~~~-~-d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 323 (340)
T 4aow_A 259 INALCFSPNRYWL-CAA-T-GPSIKIWDLEGKIIVDEL---KQEVISTSSKAEPPQCTSLAWSADGQTLFA 323 (340)
T ss_dssp EEEEEECSSSSEE-EEE-E-TTEEEEEETTTTEEEEEE---CCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred EEeeecCCCCcee-ecc-C-CCEEEEEECCCCeEEEec---cccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence 9999999987543 332 2 345666776554432221 111122345689999999999999998764
No 16
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.9e-39 Score=276.42 Aligned_cols=275 Identities=16% Similarity=0.198 Sum_probs=204.8
Q ss_pred ccccccccceeEEEEccCCCEEEEeeC------CCCeEEEeCCCCcEE----EEecCCCCceEEEEECCCCCeEEEeeCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAK------DHTPTVWFADNGERL----GTYRGHNGAVWCCDVSRDSMTLITGSAD 73 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~------d~~i~iw~~~~~~~~----~~~~~H~~~V~~~~~~~~~~~l~s~s~D 73 (313)
....+|++.|++++|||||++|++||. |+.|++|+..++... ....+|...|.+++|+|+++ +++++.|
T Consensus 36 ~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~d 114 (357)
T 4g56_B 36 TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDS 114 (357)
T ss_dssp ----CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETT
T ss_pred CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECC
Confidence 345689999999999999999999998 678999988776543 34467999999999999875 5678899
Q ss_pred CcEEEEECCCCeEEEEe-----cCCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399 74 QTAKLWNVETGAQLFTF-----NFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (313)
Q Consensus 74 ~~v~vWd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (313)
|+|++||+.+++..... .+...+.++.|+|++..++. ..+.. +.+|++ ..+..+..+.+|.+
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~------v~iwd~------~~~~~~~~~~~h~~ 182 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFS------VKVWDL------SQKAVLKSYNAHSS 182 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSC------EEEEET------TTTEEEEEECCCSS
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCe------EEEEEC------CCCcEEEEEcCCCC
Confidence 99999999887654322 34567889999987665544 33332 333332 23556778889999
Q ss_pred ceEEEEEccCCC-EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC-CCEEEEeeCCCcEEEEECCCCcE
Q 021399 148 RINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-GSHFLTGSLDKSAKLWDARTLEL 225 (313)
Q Consensus 148 ~i~~~~~~~~~~-~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~~~~ 225 (313)
.|.+++|+|+++ .+++++.|+.|++||++++++...... ..|...+.+++|+|+ +.+|++|+.|+.|++||++++++
T Consensus 183 ~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~-~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~ 261 (357)
T 4g56_B 183 EVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF-CASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS 261 (357)
T ss_dssp CEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC-TTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG
T ss_pred CEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee-ccccccccchhhhhcccceEEEeecccceeEEECCCCcE
Confidence 999999999875 789999999999999998876654432 346778999999997 56889999999999999999998
Q ss_pred EEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECC-CCCee
Q 021399 226 IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNP-DGKRY 303 (313)
Q Consensus 226 ~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fsp-dgk~~ 303 (313)
+.++. +...+.+++|+|++..++++++.|+ . +++||..+++.+.. .+|.++|++|+||| |+++|
T Consensus 262 ~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~-~------------i~iwd~~~~~~~~~-~~H~~~V~~vafsP~d~~~l 327 (357)
T 4g56_B 262 AQTSAVHSQNITGLAYSYHSSPFLASISEDC-T------------VAVLDADFSEVFRD-LSHRDFVTGVAWSPLDHSKF 327 (357)
T ss_dssp CEEECCCSSCEEEEEECSSSSCCEEEEETTS-C------------EEEECTTSCEEEEE-CCCSSCEEEEEECSSSTTEE
T ss_pred eEEEeccceeEEEEEEcCCCCCEEEEEeCCC-E------------EEEEECCCCcEeEE-CCCCCCEEEEEEeCCCCCEE
Confidence 88875 4668999999999876666655543 2 45566555554443 47999999999999 89988
Q ss_pred EEE
Q 021399 304 GFL 306 (313)
Q Consensus 304 ~~~ 306 (313)
+-.
T Consensus 328 ~s~ 330 (357)
T 4g56_B 328 TTV 330 (357)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 17
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=6.4e-38 Score=264.26 Aligned_cols=244 Identities=17% Similarity=0.248 Sum_probs=187.1
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC--cEEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEEEE
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLW 79 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~--~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~vW 79 (313)
.++.+|.+.|.+++|+|+|++|++|+.|++|+|||+++. +.+.++.+|.++|++++|+++ +++|+||+.|++|++|
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW 82 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW 82 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence 468899999999999999999999999999999998753 677899999999999999864 7899999999999999
Q ss_pred ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC--
Q 021399 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-- 157 (313)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 157 (313)
|+++++.. .+..+.+|...|.++.|+|+
T Consensus 83 d~~~~~~~--------------------------------------------------~~~~~~~h~~~v~~v~~~p~~~ 112 (297)
T 2pm7_B 83 KEENGRWS--------------------------------------------------QIAVHAVHSASVNSVQWAPHEY 112 (297)
T ss_dssp EBSSSCBC--------------------------------------------------CCEEECCCSSCEEEEEECCGGG
T ss_pred EcCCCceE--------------------------------------------------EEEEeecCCCceeEEEeCcCCC
Confidence 98764210 11223457788999999997
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC-------------CCEEEEeeCCCcEEEEECCCCc
Q 021399 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-------------GSHFLTGSLDKSAKLWDARTLE 224 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-------------~~~l~s~s~dg~i~iwd~~~~~ 224 (313)
+.++++++.|+.|++||++.+..... ....+|...|.+++|+|+ +.+|++|+.|++|++||+++++
T Consensus 113 g~~l~s~s~d~~v~~wd~~~~~~~~~-~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 113 GPMLLVASSDGKVSVVEFKENGTTSP-IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (297)
T ss_dssp CSEEEEEETTSEEEEEEBCSSSCBCC-EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred CcEEEEEECCCcEEEEEecCCCceee-eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence 78999999999999999976532211 112468899999999997 5699999999999999998765
Q ss_pred ----EEEEEe-cCCceeEEEeccCC--CEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEEC
Q 021399 225 ----LIKTYV-TERPVNAVTMSPLL--DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 297 (313)
Q Consensus 225 ----~~~~~~-~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fs 297 (313)
+..++. +...+.+++|+|++ ...+++++.|. .+.+||.+...... ...+....+|...|++++|+
T Consensus 192 ~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~-~v~iWd~~~~~~~~-------~~~~~~~~~~~~~v~~~~~s 263 (297)
T 2pm7_B 192 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDR-TCIIWTQDNEQGPW-------KKTLLKEEKFPDVLWRASWS 263 (297)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS-CEEEEEESSTTSCC-------EEEESSSSCCSSCEEEEEEC
T ss_pred ceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCC-cEEEEEeCCCCCcc-------ceeeeecccCCCcEEEEEEC
Confidence 445554 45679999999986 45555555543 34444432211000 00011124688999999999
Q ss_pred CCCCeeEEE
Q 021399 298 PDGKRYGFL 306 (313)
Q Consensus 298 pdgk~~~~~ 306 (313)
|||+.+|..
T Consensus 264 ~~g~~las~ 272 (297)
T 2pm7_B 264 LSGNVLALS 272 (297)
T ss_dssp SSSCCEEEE
T ss_pred CCCCEEEEE
Confidence 999998764
No 18
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=7.3e-38 Score=277.70 Aligned_cols=287 Identities=14% Similarity=0.174 Sum_probs=216.1
Q ss_pred cccccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcE--EEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEE
Q 021399 5 LMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGER--LGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWN 80 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~--~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd 80 (313)
...+|...|+||+|+| ++.+||+|+.||.|+|||+.+++. ...+.+|.+.|++++|+| ++++|+|||.|++|++||
T Consensus 114 ~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 114 KAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp EEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEE
T ss_pred cCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEee
Confidence 3457888999999999 467999999999999999987754 445678999999999998 678999999999999999
Q ss_pred CCCCeEEEEecC---CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399 81 VETGAQLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (313)
Q Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (313)
++++........ .....++.|.+++..++.... ++.+.++++. +..+..+.+|...|.++.|+|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-----dg~i~~wd~~-------~~~~~~~~~h~~~v~~v~~~p~ 261 (435)
T 4e54_B 194 FKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN-----VGNVILLNMD-------GKELWNLRMHKKKVTHVALNPC 261 (435)
T ss_dssp TTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECS-----SSBEEEEESS-------SCBCCCSBCCSSCEEEEEECTT
T ss_pred ccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeC-----CCcEeeeccC-------cceeEEEecccceEEeeeecCC
Confidence 987655443332 234567888887766555432 2223344331 2234456789999999999998
Q ss_pred CC-EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC----
Q 021399 158 NR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---- 232 (313)
Q Consensus 158 ~~-~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---- 232 (313)
++ .+++|+.|+.|++||+++.+....+....+|...|++++|+|+|.+|++++.||+|++||++++.+...+...
T Consensus 262 ~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~ 341 (435)
T 4e54_B 262 CDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH 341 (435)
T ss_dssp CSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC
T ss_pred CceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc
Confidence 76 6789999999999999887655555445679999999999999999999999999999999998877665321
Q ss_pred ---CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccc-cccccceeEE-EECCCCCeeEE
Q 021399 233 ---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-KGHFGPINAL-AFNPDGKRYGF 305 (313)
Q Consensus 233 ---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~~-~fspdgk~~~~ 305 (313)
.....+.|+|.+..++++...+...+....... ..+++||..+++.+..+ .+|...|.++ +|||||+.+|.
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~las 417 (435)
T 4e54_B 342 FQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYEL--RTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLAS 417 (435)
T ss_dssp CSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCC--CCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEE
T ss_pred cccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCC--CEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEE
Confidence 123456788988888877655544332221111 13677887777766554 4788999887 79999998874
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.4e-36 Score=276.76 Aligned_cols=280 Identities=28% Similarity=0.489 Sum_probs=213.9
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
.|+||++.|++++|||||++|++|+.|+.|+||| .+++++.++.+|.+.|++++|+|++++|+|++.|++|++||++ +
T Consensus 11 ~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd-~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~-~ 88 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-G 88 (577)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-S
T ss_pred EECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEE-CCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC-C
Confidence 4899999999999999999999999999999999 4788999999999999999999999999999999999999975 4
Q ss_pred eEEEEec-CCCCeeEEEeecCCeEEEEE-CCCceeccccc------------eeeeeeeCCC----------------CC
Q 021399 85 AQLFTFN-FDSPARSVDFAVGDKLAVIT-TDPFMELNSAI------------HVKRIARDPA----------------DQ 134 (313)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~------------~~~~~~~~~~----------------~~ 134 (313)
+.+..+. +..++..+.|+|++..++.. .+......... .+......+. ..
T Consensus 89 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (577)
T 2ymu_A 89 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 168 (577)
T ss_dssp CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred CEEEEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceeeeccCCCCceeeeeeecCCccceecccccceecccc
Confidence 5555554 56788899999876655443 33222111100 0000000000 01
Q ss_pred CCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCc
Q 021399 135 GGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS 214 (313)
Q Consensus 135 ~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~ 214 (313)
..........+...+..+.++|+++++++++.|+.|++||.. ++.+..+ .+|...|.+++|+|++.+|++++.|+.
T Consensus 169 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~-~~~~~~~---~~~~~~v~~~~~s~dg~~l~~~~~d~~ 244 (577)
T 2ymu_A 169 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTL---TGHSSSVRGVAFSPDGQTIASASDDKT 244 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEEEEE---ECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred ceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC-CcEEEEE---ecCCCCEEEEEECCCCCEEEEEeCCCE
Confidence 123344456677889999999999999999999999999964 4555544 368899999999999999999999999
Q ss_pred EEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeE
Q 021399 215 AKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 293 (313)
Q Consensus 215 i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 293 (313)
|++||.. ++++..+. +...+.+++|+|++..+++++. + .. +++|+. .++.+..+.+|...|++
T Consensus 245 i~~w~~~-~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~-d-~~------------i~~w~~-~~~~~~~~~~h~~~v~~ 308 (577)
T 2ymu_A 245 VKLWNRN-GQLLQTLTGHSSSVNGVAFRPDGQTIASASD-D-KT------------VKLWNR-NGQLLQTLTGHSSSVWG 308 (577)
T ss_dssp EEEECTT-SCEEEEECCCSSCEEEEEECTTSSEEEEEET-T-SC------------EEEEET-TSCEEEEECCCSSCEEE
T ss_pred EEEEeCC-CCEEEEEecCCCCEEEEEEcCCCCEEEEEeC-C-CE------------EEEEeC-CCcEEEEEecCCCCeEE
Confidence 9999964 56666664 4668999999999988776543 2 22 345553 23344567789999999
Q ss_pred EEECCCCCeeEEE
Q 021399 294 LAFNPDGKRYGFL 306 (313)
Q Consensus 294 ~~fspdgk~~~~~ 306 (313)
++|+||++.++..
T Consensus 309 ~~~~~~~~~l~t~ 321 (577)
T 2ymu_A 309 VAFSPDGQTIASA 321 (577)
T ss_dssp EEECTTSSEEEEE
T ss_pred EEECCCCCEEEEE
Confidence 9999999998754
No 20
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.8e-38 Score=266.84 Aligned_cols=244 Identities=16% Similarity=0.228 Sum_probs=181.5
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECC--CCCeEEEeeCCCcEEEE
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAKLW 79 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~--~~~~l~s~s~D~~v~vW 79 (313)
.++.+|.+.|++++|+|+|++|++|+.|++|+|||+.+++ .+.++++|.+.|++++|++ ++++|+||+.|++|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW 86 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIW 86 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence 4678999999999999999999999999999999998875 4678999999999999986 48899999999999999
Q ss_pred ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC--
Q 021399 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-- 157 (313)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 157 (313)
|+++++. .....+.+|...|.+++|+|+
T Consensus 87 d~~~~~~--------------------------------------------------~~~~~~~~h~~~V~~v~~~p~~~ 116 (316)
T 3bg1_A 87 REENGTW--------------------------------------------------EKSHEHAGHDSSVNSVCWAPHDY 116 (316)
T ss_dssp CCSSSCC--------------------------------------------------CEEEEECCCSSCCCEEEECCTTT
T ss_pred ECCCCcc--------------------------------------------------eEEEEccCCCCceEEEEECCCCC
Confidence 9876421 012234567888999999997
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCC-----------------CCEEEEeeCCCcEEEEEC
Q 021399 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAAD-----------------GSHFLTGSLDKSAKLWDA 220 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~-----------------~~~l~s~s~dg~i~iwd~ 220 (313)
+.++++|+.|+.|++||+..+..........+|...+.+++|+|+ +.+|++|+.|++|++||+
T Consensus 117 g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~ 196 (316)
T 3bg1_A 117 GLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKE 196 (316)
T ss_dssp CSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEE
T ss_pred CcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEe
Confidence 789999999999999999875432222233578889999999997 468999999999999999
Q ss_pred CCC---cEEEEEe-cCCceeEEEeccCC---CEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeE
Q 021399 221 RTL---ELIKTYV-TERPVNAVTMSPLL---DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA 293 (313)
Q Consensus 221 ~~~---~~~~~~~-~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 293 (313)
++. +++.++. +...+.+++|+|++ ...+++++.|+ .+.+|+.+..... ......+.+|...|++
T Consensus 197 ~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~-~v~iw~~~~~~~~--------~~~~~~~~~~~~~v~~ 267 (316)
T 3bg1_A 197 EEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG-RVFIWTCDDASSN--------TWSPKLLHKFNDVVWH 267 (316)
T ss_dssp CTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC-EEEEEECSSTTCC--------CCBCCEEEECSSCEEE
T ss_pred CCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC-eEEEEEccCcccc--------chhhhhhhcCCCcEEE
Confidence 865 3555554 45679999999986 23445545443 3344443221000 0011234568999999
Q ss_pred EEECCCCCeeEEE
Q 021399 294 LAFNPDGKRYGFL 306 (313)
Q Consensus 294 ~~fspdgk~~~~~ 306 (313)
++|+|||+++|..
T Consensus 268 v~~sp~g~~las~ 280 (316)
T 3bg1_A 268 VSWSITANILAVS 280 (316)
T ss_dssp EEECTTTCCEEEE
T ss_pred EEEcCCCCEEEEE
Confidence 9999999998764
No 21
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-36 Score=258.21 Aligned_cols=278 Identities=15% Similarity=0.189 Sum_probs=200.0
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC--cEEEEe-cC-CCCceEEEEECCCCCeEEEeeCCCcEEEE
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTY-RG-HNGAVWCCDVSRDSMTLITGSADQTAKLW 79 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~--~~~~~~-~~-H~~~V~~~~~~~~~~~l~s~s~D~~v~vW 79 (313)
..|.+|.++|++++|+|+ +|++|+.|+.|++||+.++ +.+..+ .+ |.+.|.+++|+|++++|++|+.|++|++|
T Consensus 8 ~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw 85 (330)
T 2hes_X 8 KSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIW 85 (330)
T ss_dssp EEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEE
Confidence 368899999999999987 9999999999999999875 455666 45 99999999999999999999999999999
Q ss_pred ECCCC-------eEEEEe-cCCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceE
Q 021399 80 NVETG-------AQLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN 150 (313)
Q Consensus 80 d~~~~-------~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (313)
|++.. +.+..+ .+...+.++.|+|++..++. +.+. .+.+|++.. .....+.+..+.+|...|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~------~v~iwd~~~--~~~~~~~~~~~~~h~~~v~ 157 (330)
T 2hes_X 86 AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDK------SVWIWETDE--SGEEYECISVLQEHSQDVK 157 (330)
T ss_dssp EC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTS------CEEEEECCT--TCCCCEEEEEECCCSSCEE
T ss_pred EcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCC------EEEEEeccC--CCCCeEEEEEeccCCCceE
Confidence 98532 333333 34567889999987665544 3333 334444321 1112245667889999999
Q ss_pred EEEEccCCCEEEEeeCCCeEEEEECCCC--ceeeecccccCceeceEEEEECCC--CCEEEEeeCCCcEEEEECCCC---
Q 021399 151 RAVWGPLNRTIISAGEDAIVRIWDTETG--KLLKESDKETGHKKTITSLAKAAD--GSHFLTGSLDKSAKLWDARTL--- 223 (313)
Q Consensus 151 ~~~~~~~~~~i~t~~~d~~i~lwd~~~~--~~~~~~~~~~~h~~~v~~~~~s~~--~~~l~s~s~dg~i~iwd~~~~--- 223 (313)
++.|+|++++|++|+.|++|++||...+ +++..+ .+|...|.+++|+|+ +.+|++|+.|++|++||++++
T Consensus 158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~ 234 (330)
T 2hes_X 158 HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL---NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED 234 (330)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTT
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc---cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcc
Confidence 9999999999999999999999998665 344433 479999999999998 778999999999999998764
Q ss_pred -----cEEEEEe--cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccccc-ceeEEE
Q 021399 224 -----ELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG-PINALA 295 (313)
Q Consensus 224 -----~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~~ 295 (313)
.+...+. +...+.+++|+|.+ . +++++.|+ .+.+|+...+..+. ....+.+|.. .|++++
T Consensus 235 ~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~-l~s~~~dg-~v~iw~~~~~~~~~---------~~~~~~~h~~~~v~~v~ 302 (330)
T 2hes_X 235 DQQEWVCEAILPDVHKRQVYNVAWGFNG-L-IASVGADG-VLAVYEEVDGEWKV---------FAKRALCHGVYEINVVK 302 (330)
T ss_dssp SCEEEEEEEECCSCCSSCEEEEEECTTS-C-EEEEETTS-CEEEEEEETTEEEE---------EEEESCTTTTSCEEEEE
T ss_pred ccceeEEeeecccccccceEEEEEcCCC-E-EEEEeCCC-EEEEEEcCCCceEE---------EeccccccccceEEEEE
Confidence 3444443 45679999999754 3 44444443 34444433222110 0112357887 999999
Q ss_pred ECC--CCCeeEEE
Q 021399 296 FNP--DGKRYGFL 306 (313)
Q Consensus 296 fsp--dgk~~~~~ 306 (313)
|+| |++.++.-
T Consensus 303 ~~~~~~~~~las~ 315 (330)
T 2hes_X 303 WLELNGKTILATG 315 (330)
T ss_dssp EC-----CCEEEE
T ss_pred EecCCCceEEEEe
Confidence 999 78887653
No 22
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.6e-36 Score=257.25 Aligned_cols=233 Identities=21% Similarity=0.354 Sum_probs=201.9
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
.+.+|...|.+++|+++++++++++.|+.|++||+.+++.+..+..|...+.+++|+|++++|++++.|++|++||++++
T Consensus 75 ~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~ 154 (321)
T 3ow8_A 75 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG 154 (321)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC
T ss_pred eeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eEEEEecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399 85 AQLFTFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (313)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t 163 (313)
+....+.. ...+..+.|+|+++.++.... ++.+.++++ ..++.+..+.+|..+|.+++|+|++++|++
T Consensus 155 ~~~~~~~~~~~~v~~~~~spdg~~lasg~~-----dg~i~iwd~------~~~~~~~~~~~h~~~v~~l~~spd~~~l~s 223 (321)
T 3ow8_A 155 KKEYSLDTRGKFILSIAYSPDGKYLASGAI-----DGIINIFDI------ATGKLLHTLEGHAMPIRSLTFSPDSQLLVT 223 (321)
T ss_dssp SEEEEEECSSSCEEEEEECTTSSEEEEEET-----TSCEEEEET------TTTEEEEEECCCSSCCCEEEECTTSCEEEE
T ss_pred ceeEEecCCCceEEEEEECCCCCEEEEEcC-----CCeEEEEEC------CCCcEEEEEcccCCceeEEEEcCCCCEEEE
Confidence 87766643 456888999997766554332 223334433 234567778899999999999999999999
Q ss_pred eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEecc
Q 021399 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSP 242 (313)
Q Consensus 164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p 242 (313)
|+.|+.|++||+++++....+ .+|...|.+++|+|++.+|++++.|++|++||+++++++.++. +...+.+++|+|
T Consensus 224 ~s~dg~i~iwd~~~~~~~~~~---~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~ 300 (321)
T 3ow8_A 224 ASDDGYIKIYDVQHANLAGTL---SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG 300 (321)
T ss_dssp ECTTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT
T ss_pred EcCCCeEEEEECCCcceeEEE---cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC
Confidence 999999999999988776655 3689999999999999999999999999999999999998885 456899999999
Q ss_pred CCCEEEEcc
Q 021399 243 LLDHVVLGG 251 (313)
Q Consensus 243 ~~~~~~~~~ 251 (313)
++..+++++
T Consensus 301 ~g~~l~s~~ 309 (321)
T 3ow8_A 301 NGSKIVSVG 309 (321)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEe
Confidence 998876654
No 23
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=9.9e-36 Score=272.65 Aligned_cols=266 Identities=27% Similarity=0.500 Sum_probs=216.5
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
.+.+|...|.+++|+|++++|++++.|+.|++||.. +..+..+.+|...|.+++|+|+++.+++++.|+++++||...
T Consensus 298 ~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~- 375 (577)
T 2ymu_A 298 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG- 375 (577)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-
T ss_pred EEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-
Confidence 578999999999999999999999999999999975 455678899999999999999999999999999999999654
Q ss_pred eEEEEe-cCCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 85 AQLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 85 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
+.+..+ .+...+..+.|+++++.++. ..+... .+++ ..++.+..+.+|...|..++|+|++++++
T Consensus 376 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v------~~~~-------~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 442 (577)
T 2ymu_A 376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV------KLWN-------RNGQLLQTLTGHSSSVWGVAFSPDDQTIA 442 (577)
T ss_dssp CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEE------EEEC-------TTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEE------EEEe-------CCCCEEEEecCCCCCeEEEEECCCCCEEE
Confidence 444444 35677889999987665544 333322 2222 12456677889999999999999999999
Q ss_pred EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEec
Q 021399 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMS 241 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~ 241 (313)
+++.|+.|++||.. ++.+..+ .+|...|++++|+|++++|++++.|++|++||. +++++..+. +...+.+++|+
T Consensus 443 ~~~~d~~v~~w~~~-~~~~~~~---~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s 517 (577)
T 2ymu_A 443 SASDDKTVKLWNRN-GQLLQTL---TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS 517 (577)
T ss_dssp EEETTSEEEEEETT-SCEEEEE---ECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEEC
T ss_pred EEcCCCEEEEEECC-CCEEEEE---cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEc
Confidence 99999999999975 4555444 368899999999999999999999999999995 677877776 46689999999
Q ss_pred cCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
|++..+++++ .| . .+++||. +++.+..+.+|.++|++++|+|||++++-
T Consensus 518 ~dg~~l~s~~-~d-g------------~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s 566 (577)
T 2ymu_A 518 PDGQTIASAS-DD-K------------TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIAS 566 (577)
T ss_dssp TTSSCEEEEE-TT-S------------EEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEE
T ss_pred CCCCEEEEEE-Cc-C------------EEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 9999877654 33 2 2456663 45566778899999999999999998764
No 24
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.1e-36 Score=264.45 Aligned_cols=233 Identities=25% Similarity=0.397 Sum_probs=200.1
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
.++.+|.+.|.+++|+|+|++|++|+.|++|++||+.+++.+.++.+|...|.+++|+|+++.++||+.|++|++||+.+
T Consensus 144 ~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~ 223 (410)
T 1vyh_C 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223 (410)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred EEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEec-CCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC----
Q 021399 84 GAQLFTFN-FDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL---- 157 (313)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---- 157 (313)
+.++..+. +...+..+.+.+++..++.. .+. .+.+|++. .......+.+|...|.++.|+|+
T Consensus 224 ~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~------~v~vwd~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~ 291 (410)
T 1vyh_C 224 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ------TVRVWVVA------TKECKAELREHRHVVECISWAPESSYS 291 (410)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTS------CEEEEETT------TCCEEEEECCCSSCEEEEEECCSCGGG
T ss_pred CcEEEEEeCCCccEEEEEECCCCCEEEEEcCCC------eEEEEECC------CCceeeEecCCCceEEEEEEcCccccc
Confidence 98877665 45567888888876655443 333 33344331 23456677889999999999986
Q ss_pred ----------------CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399 158 ----------------NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (313)
Q Consensus 158 ----------------~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~ 221 (313)
+.++++|+.|+.|++||+.++.++..+. +|...|++++|+|++.+|++|+.|++|++||++
T Consensus 292 ~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~---~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV---GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp GGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred chhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE---CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 6689999999999999999988776653 688999999999999999999999999999999
Q ss_pred CCcEEEEEe-cCCceeEEEeccCCCEEEEcc
Q 021399 222 TLELIKTYV-TERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 222 ~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~ 251 (313)
+++++.++. +...+.+++|+|++..+++++
T Consensus 369 ~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs 399 (410)
T 1vyh_C 369 NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399 (410)
T ss_dssp TSCCCEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred CCceEEEEcCCCCcEEEEEEcCCCCEEEEEe
Confidence 999888886 466899999999998876654
No 25
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-35 Score=260.42 Aligned_cols=271 Identities=23% Similarity=0.391 Sum_probs=208.4
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCC------------------ceEEEEECCCCCeEEE
Q 021399 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG------------------AVWCCDVSRDSMTLIT 69 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~------------------~V~~~~~~~~~~~l~s 69 (313)
+|...|.+++|+|||++|++|+ |+.++||+..+++.+..+..|.. .|.+++|+|++++|++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 6999999999999999999976 78999999999999888876642 4999999999999999
Q ss_pred eeCCCcEEEEECCCCeEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399 70 GSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (313)
Q Consensus 70 ~s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (313)
|+.|++|++||+.+++.+..+. +...+.++.|.+++..++. +.+. .+.+|++. .+.....+. +..
T Consensus 141 ~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~------~v~iwd~~------~~~~~~~~~-~~~ 207 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR------TVRIWDLR------TGQCSLTLS-IED 207 (393)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS------EEEEEETT------TTEEEEEEE-CSS
T ss_pred EcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCC------cEEEEECC------CCeeEEEEE-cCC
Confidence 9999999999999998877665 5667889999986654443 3333 23334332 122333333 456
Q ss_pred ceEEEEEcc-CCCEEEEeeCCCeEEEEECCCCceeeeccc----ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399 148 RINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (313)
Q Consensus 148 ~i~~~~~~~-~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~----~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (313)
.+..+.|+| +++++++|+.|+.|++||+.++..+..+.. ..+|...|.+++|+|++.+|++|+.|++|++||+++
T Consensus 208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 789999999 889999999999999999998877655421 246889999999999999999999999999999976
Q ss_pred Cc------------EEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccccc
Q 021399 223 LE------------LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG 289 (313)
Q Consensus 223 ~~------------~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 289 (313)
.. +...+. +...+.+++|+|++..+++++ .|+ .+++||..+++.+..+.+|.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs-~D~-------------~v~iwd~~~~~~~~~l~~h~~ 353 (393)
T 1erj_A 288 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS-KDR-------------GVLFWDKKSGNPLLMLQGHRN 353 (393)
T ss_dssp -------------CEEEEEECCSSCEEEEEECGGGCEEEEEE-TTS-------------EEEEEETTTCCEEEEEECCSS
T ss_pred CCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe-CCC-------------eEEEEECCCCeEEEEECCCCC
Confidence 42 333443 455689999999988776543 332 245677777777777889999
Q ss_pred ceeEEEECC------CCCeeEEE
Q 021399 290 PINALAFNP------DGKRYGFL 306 (313)
Q Consensus 290 ~V~~~~fsp------dgk~~~~~ 306 (313)
.|++++|+| +++.|+..
T Consensus 354 ~v~~v~~~~~~~~~p~~~~l~sg 376 (393)
T 1erj_A 354 SVISVAVANGSSLGPEYNVFATG 376 (393)
T ss_dssp CEEEEEECSSCTTCTTCEEEEEE
T ss_pred CEEEEEecCCcCcCCCCCEEEEE
Confidence 999999987 56766543
No 26
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.9e-36 Score=279.43 Aligned_cols=284 Identities=20% Similarity=0.273 Sum_probs=214.4
Q ss_pred cccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCC-----cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399 5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNG-----ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~-----~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~v 78 (313)
.|++|.+.|++++|+|++ ++|+|||.|++|++|++.+. .....+.+|.+.|.+++|+|++++|+||+.|++|++
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~v 456 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEE
Confidence 578999999999999875 79999999999999998753 356788999999999999999999999999999999
Q ss_pred EECCCCeEEEEec-CCCCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEE---ecCCCCceEEEE
Q 021399 79 WNVETGAQLFTFN-FDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLI---LKGPQGRINRAV 153 (313)
Q Consensus 79 Wd~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~ 153 (313)
||+.+++.+..+. +...+.++.|++++. ++.++.+.... +|+.. ....... ..+|...|.++.
T Consensus 457 wd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~------iwd~~------~~~~~~~~~~~~~h~~~v~~~~ 524 (694)
T 3dm0_A 457 WDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIK------LWNTL------GECKYTISEGGEGHRDWVSCVR 524 (694)
T ss_dssp EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEE------EECTT------SCEEEEECSSTTSCSSCEEEEE
T ss_pred EECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEE------EEECC------CCcceeeccCCCCCCCcEEEEE
Confidence 9999998776654 567889999998665 44444444333 33211 0111111 146788899999
Q ss_pred EccCC--CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec
Q 021399 154 WGPLN--RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (313)
Q Consensus 154 ~~~~~--~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 231 (313)
|+|++ ..+++++.|+.|++||+.++++...+ .+|...|++++|+|++++|++|+.||+|++||+++++++..+..
T Consensus 525 ~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~---~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~ 601 (694)
T 3dm0_A 525 FSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTL---AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA 601 (694)
T ss_dssp ECSCSSSCEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC
T ss_pred EeCCCCcceEEEEeCCCeEEEEECCCCcEEEEE---cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC
Confidence 99986 57999999999999999988776654 36899999999999999999999999999999999999988877
Q ss_pred CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeee-hhhh------hhhccccccccceeEEEECCCCCeeE
Q 021399 232 ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFD-KILQ------EEIGGVKGHFGPINALAFNPDGKRYG 304 (313)
Q Consensus 232 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~h~~~V~~~~fspdgk~~~ 304 (313)
...+.+++|+|++..++++. + ..+.+||.+.+.....+-. .... ........+...+++++|||||+.++
T Consensus 602 ~~~v~~~~~sp~~~~l~~~~--~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~ 678 (694)
T 3dm0_A 602 NSVIHALCFSPNRYWLCAAT--E-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLF 678 (694)
T ss_dssp SSCEEEEEECSSSSEEEEEE--T-TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEE
T ss_pred CCcEEEEEEcCCCcEEEEEc--C-CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEE
Confidence 78899999999987655432 2 2266666655443221110 0000 00000112233578999999999987
Q ss_pred EE
Q 021399 305 FL 306 (313)
Q Consensus 305 ~~ 306 (313)
..
T Consensus 679 sg 680 (694)
T 3dm0_A 679 SG 680 (694)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 27
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-35 Score=259.54 Aligned_cols=269 Identities=20% Similarity=0.324 Sum_probs=219.9
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~ 87 (313)
+|.+.|.+++|+|++++|++++.|+.|++|| .+++.+..+.+|...|.+++|+|+++.|++++.|+.|++||+.+++.+
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~ 184 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM 184 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE
Confidence 3788999999999999999999999999999 778889999999999999999999999999999999999999999887
Q ss_pred EEecCCC-C---------------eeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEE
Q 021399 88 FTFNFDS-P---------------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (313)
Q Consensus 88 ~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (313)
..+.... . +..+.|.++..+++...+. .+.++++. ....+..+..|...+..
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~i~~~d~~------~~~~~~~~~~~~~~i~~ 252 (425)
T 1r5m_A 185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG------AIFVYQIT------EKTPTGKLIGHHGPISV 252 (425)
T ss_dssp EEECCC---------------CCCBSCCEEEETTEEEEECGGG------CEEEEETT------CSSCSEEECCCSSCEEE
T ss_pred EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCC------eEEEEEcC------CCceeeeeccCCCceEE
Confidence 7665432 2 6667777777766654432 23333322 12344566788999999
Q ss_pred EEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec
Q 021399 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (313)
Q Consensus 152 ~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 231 (313)
+.|+|+++++++++.|+.|++||+.+++.+..+. +|...+.+++|+|++ .+++++.|+.|++||+++++++..+..
T Consensus 253 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~ 328 (425)
T 1r5m_A 253 LEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY---GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV 328 (425)
T ss_dssp EEEETTTTEEEEEETTSCEEEECSSSBSCSEEEC---CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEEcCCCEEEEEECCCCccceEec---CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc
Confidence 9999999999999999999999999887665553 588899999999999 999999999999999999998888764
Q ss_pred -CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhh--------------------hhcccccccc-
Q 021399 232 -ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE--------------------EIGGVKGHFG- 289 (313)
Q Consensus 232 -~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~h~~- 289 (313)
...+.+++|+|++..+++++. + + .+++||..+.+ .+..+.+|..
T Consensus 329 ~~~~i~~~~~s~~~~~l~~~~~-d-g------------~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (425)
T 1r5m_A 329 DGVPIFAGRISQDGQKYAVAFM-D-G------------QVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDN 394 (425)
T ss_dssp TTCCEEEEEECTTSSEEEEEET-T-S------------CEEEEECHHHHC--------------CEECCEEEEECCTTCC
T ss_pred CCccEEEEEEcCCCCEEEEEEC-C-C------------eEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccC
Confidence 668999999999988776543 2 2 24556665555 6777888976
Q ss_pred -ceeEEEECCCCCeeEEEE
Q 021399 290 -PINALAFNPDGKRYGFLL 307 (313)
Q Consensus 290 -~V~~~~fspdgk~~~~~~ 307 (313)
.|++++|+|||+.++...
T Consensus 395 ~~v~~~~~s~~~~~l~~~~ 413 (425)
T 1r5m_A 395 DYIFDLSWNCAGNKISVAY 413 (425)
T ss_dssp CCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEccCCCceEEEEe
Confidence 999999999999887653
No 28
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=259.86 Aligned_cols=198 Identities=21% Similarity=0.265 Sum_probs=167.7
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVET 83 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~ 83 (313)
.+.+|.+.|++++|+|+|++|++|+.|++|++||+.+++.+.++.+|.+.|.+++|++++. +|+||+.|++|++||+++
T Consensus 122 ~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~ 201 (344)
T 4gqb_B 122 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC 201 (344)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS
T ss_pred cccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc
Confidence 3568999999999999999999999999999999999999999999999999999999875 789999999999999988
Q ss_pred CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC-CCEEE
Q 021399 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-NRTII 162 (313)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~ 162 (313)
++....+.. ..+...+.++.|+|. +++++
T Consensus 202 ~~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~p~~~~~l~ 231 (344)
T 4gqb_B 202 PKPASQIGC--------------------------------------------------SAPGYLPTSLAWHPQQSEVFV 231 (344)
T ss_dssp SSCEEECC------------------------------------------------------CCCEEEEEECSSCTTEEE
T ss_pred cceeeeeec--------------------------------------------------ceeeccceeeeecCCCCcceE
Confidence 765432210 112345677888885 56788
Q ss_pred EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCC-CEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEec
Q 021399 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS 241 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 241 (313)
+|+.|+.|++||+++++++..+. +|...|++++|+|++ .+|++|+.|++|++||+++++++....+...|.+++|+
T Consensus 232 sg~~dg~v~~wd~~~~~~~~~~~---~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~s 308 (344)
T 4gqb_B 232 FGDENGTVSLVDTKSTSCVLSSA---VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWS 308 (344)
T ss_dssp EEETTSEEEEEESCC--CCEEEE---CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEEC
T ss_pred EeccCCcEEEEECCCCcEEEEEc---CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEe
Confidence 99999999999999988776654 689999999999998 57999999999999999999887665567789999999
Q ss_pred cCCCEEEEcccccC
Q 021399 242 PLLDHVVLGGGQDA 255 (313)
Q Consensus 242 p~~~~~~~~~~~~~ 255 (313)
|++..++++++.|+
T Consensus 309 p~~~~llas~s~D~ 322 (344)
T 4gqb_B 309 PLNHSLLTTVGWDH 322 (344)
T ss_dssp SSSTTEEEEEETTS
T ss_pred CCCCeEEEEEcCCC
Confidence 99998887777664
No 29
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.4e-35 Score=256.91 Aligned_cols=280 Identities=16% Similarity=0.216 Sum_probs=215.7
Q ss_pred cccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcEEEEec--CCCCceEEEEECC-CCCeEEEeeCCCcEEEEE
Q 021399 5 LMKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSR-DSMTLITGSADQTAKLWN 80 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~~--~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd 80 (313)
.+.+|.+.|.+++|+|++ ++|++|+.|+.|+|||+.+++....+. +|.+.|.+++|+| ++++|++++.|++|++||
T Consensus 68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRD 147 (383)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEE
T ss_pred eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEE
Confidence 578999999999999999 999999999999999999888777765 6999999999999 678999999999999999
Q ss_pred CCCCeEEEEecC---CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399 81 VETGAQLFTFNF---DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (313)
Q Consensus 81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (313)
+.+......... ...+.++.|++++..++.... +..+.++++ .+..+..+.+|.+.|.+++|+|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~i~i~d~-------~~~~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 148 FSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS-----TGRLLLLGL-------DGHEIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp TTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEET-----TSEEEEEET-------TSCEEEEEECSSSCEEEEEECSS
T ss_pred CCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECC-----CCCEEEEEC-------CCCEEEEeccCCCcEEEEEECCC
Confidence 997543333222 256889999987665554332 223334433 24467778899999999999999
Q ss_pred CC-EEEEeeCCCeEEEEECCC----CceeeecccccCceeceEEEEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEEec
Q 021399 158 NR-TIISAGEDAIVRIWDTET----GKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (313)
Q Consensus 158 ~~-~i~t~~~d~~i~lwd~~~----~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 231 (313)
++ .+++++.|+.|++||+.+ +.++... +|...|.+++|+| ++.+|++++.|+.|++||++++++...+..
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 291 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM----PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIII 291 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE----ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe----cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccc
Confidence 98 899999999999999987 4444433 4888999999999 999999999999999999999877665542
Q ss_pred --------CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccc--cccceeEEEECCCCC
Q 021399 232 --------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG--HFGPINALAFNPDGK 301 (313)
Q Consensus 232 --------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~V~~~~fspdgk 301 (313)
...+. ++|+|.+..++++...++.. .. .....+++||..+++.+..+.+ |.+.+..++|+|||+
T Consensus 292 ~~~~~~~~~~~~~-~~~~p~~~~~~~~~s~dg~~---s~--s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~ 365 (383)
T 3ei3_B 292 HPHRQFQHLTPIK-ATWHPMYDLIVAGRYPDDQL---LL--NDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGD 365 (383)
T ss_dssp CCBCCCTTSCCCC-CEECSSSSEEEEECBCCTTT---CT--TCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSS
T ss_pred ccccccccccceE-EeccCCCCceEEEecCCccc---cc--CCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCcc
Confidence 12233 46777776666554433322 11 1122467788777777777776 567888889999999
Q ss_pred eeEEE
Q 021399 302 RYGFL 306 (313)
Q Consensus 302 ~~~~~ 306 (313)
.++..
T Consensus 366 ~l~s~ 370 (383)
T 3ei3_B 366 VLASG 370 (383)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88764
No 30
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-37 Score=270.00 Aligned_cols=238 Identities=17% Similarity=0.188 Sum_probs=189.4
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC--cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~--~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd 80 (313)
|.+++.|.++|.+++|+|+|++|++|+.|+.|+|||..++ +.+.++.+|.+.|.+++|+|++++|++++.|++|++||
T Consensus 4 ~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 4 SQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred ceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 5567778889999999999999999999999999999988 78889999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (313)
+.+++. ......+.+|...|.++.|+|++++
T Consensus 84 ~~~~~~-------------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~ 114 (377)
T 3dwl_C 84 KRPDGT-------------------------------------------------WKQTLVLLRLNRAATFVRWSPNEDK 114 (377)
T ss_dssp -----C-------------------------------------------------CCCEEECCCCSSCEEEEECCTTSSC
T ss_pred cCCCCc-------------------------------------------------eeeeeEecccCCceEEEEECCCCCE
Confidence 876530 0012233457788999999999999
Q ss_pred EEEeeCCCeEEEEECCCCce---eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC----------------
Q 021399 161 IISAGEDAIVRIWDTETGKL---LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR---------------- 221 (313)
Q Consensus 161 i~t~~~d~~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~---------------- 221 (313)
|++++.|+.|++||+++++. ...+. ..|...|.+++|+|++++|++++.|++|++||++
T Consensus 115 l~~~~~d~~i~iwd~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 192 (377)
T 3dwl_C 115 FAVGSGARVISVCYFEQENDWWVSKHLK--RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSR 192 (377)
T ss_dssp CEEEESSSCEEECCC-----CCCCEEEC--SSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSC
T ss_pred EEEEecCCeEEEEEECCcccceeeeEee--cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccc
Confidence 99999999999999988763 33332 1289999999999999999999999999999985
Q ss_pred --CCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh----hccccccccceeEEE
Q 021399 222 --TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE----IGGVKGHFGPINALA 295 (313)
Q Consensus 222 --~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~V~~~~ 295 (313)
+++++..+.+...+.+++|+|++..+++++. |+ .+++||..+++. +..+.+|..+|++++
T Consensus 193 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-d~-------------~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~ 258 (377)
T 3dwl_C 193 LPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGH-DS-------------SVTIAYPSAPEQPPRALITVKLSQLPLRSLL 258 (377)
T ss_dssp CCEEEEEECCCCSSSEEEEEECTTSSCEEEEET-TT-------------EEC-CEECSTTSCEEECCCEECSSSCEEEEE
T ss_pred cchhhhhhcccCCceEEEEEECCCCCEEEEEeC-CC-------------cEEEEECCCCCCcceeeEeecCCCCceEEEE
Confidence 3455555555667999999999987776543 22 345666666655 677889999999999
Q ss_pred ECCCCCeeEE
Q 021399 296 FNPDGKRYGF 305 (313)
Q Consensus 296 fspdgk~~~~ 305 (313)
|+|||+.++.
T Consensus 259 ~s~~~~~l~~ 268 (377)
T 3dwl_C 259 WANESAIVAA 268 (377)
T ss_dssp EEETTEEEEE
T ss_pred EcCCCCEEEE
Confidence 9999998764
No 31
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=7.5e-35 Score=247.97 Aligned_cols=231 Identities=19% Similarity=0.266 Sum_probs=188.7
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
..+.+|...|.+++|+|+|++|++|+.|++|++||+.+++.+.++.+|.+.|.+++|+|++++++||+.|++|++||++.
T Consensus 59 ~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~ 138 (319)
T 3frx_A 59 RSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG 138 (319)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS
T ss_pred eEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CeEEEEecCCCCeeEEEeecCC-------eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 84 GAQLFTFNFDSPARSVDFAVGD-------KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
........+...+..+.+.|.. .++....+. .+++|++. .......+.+|...|.+++|+|
T Consensus 139 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~------~i~~wd~~------~~~~~~~~~~h~~~v~~~~~sp 206 (319)
T 3frx_A 139 QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK------MVKAWNLN------QFQIEADFIGHNSNINTLTASP 206 (319)
T ss_dssp CEEEEECCCSSCEEEEEECCC------CCEEEEEETTS------CEEEEETT------TTEEEEEECCCCSCEEEEEECT
T ss_pred CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCC------EEEEEECC------cchhheeecCCCCcEEEEEEcC
Confidence 5443334456677788887643 233333333 23334331 2345567789999999999999
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-----
Q 021399 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT----- 231 (313)
Q Consensus 157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----- 231 (313)
++++|++++.|+.|++||+.+++.+..+. +...+.+++|+|++.++++++.+ .+++|++++...+..+..
T Consensus 207 ~g~~l~s~~~dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~ 281 (319)
T 3frx_A 207 DGTLIASAGKDGEIMLWNLAAKKAMYTLS----AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGY 281 (319)
T ss_dssp TSSEEEEEETTCEEEEEETTTTEEEEEEE----CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEec----CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCcccccc
Confidence 99999999999999999999988776654 34679999999999999888755 599999998877766532
Q ss_pred ----CCceeEEEeccCCCEEEEcc
Q 021399 232 ----ERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 232 ----~~~~~~~~~~p~~~~~~~~~ 251 (313)
...+.+++|+|+++.+++++
T Consensus 282 ~~~~~~~v~~~~~spdg~~l~sg~ 305 (319)
T 3frx_A 282 SKAAEPHAVSLAWSADGQTLFAGY 305 (319)
T ss_dssp CGGGCCCEEEEEECTTSSEEEEEE
T ss_pred ccCcCcceeEEEECCCCCEEEEee
Confidence 23578999999999887654
No 32
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=9e-35 Score=251.68 Aligned_cols=289 Identities=20% Similarity=0.230 Sum_probs=218.5
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd 80 (313)
|.++..|.++|.+++|+|++++|++++.|+.|++||..+++ .+.++.+|...|.+++|+|++++|++++.|+.|++||
T Consensus 1 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 1 MAYHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 80 (372)
T ss_dssp -CEEESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CceecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE
Confidence 56778899999999999999999999999999999999987 8899999999999999999999999999999999999
Q ss_pred CCCCeEEEEe---cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCc-eEEEecCCCCceEEEEEcc
Q 021399 81 VETGAQLFTF---NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE-SVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 81 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~ 156 (313)
+++++..... .+...+..+.|.+++..++.... +..+.++++.... ... .......|...|.++.|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----d~~v~i~d~~~~~---~~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG-----SRVISICYFEQEN---DWWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET-----TSSEEEEEEETTT---TEEEEEEECTTCCSCEEEEEECT
T ss_pred CCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeC-----CCEEEEEEecCCC---cceeeeeeecccCCCeeEEEEcC
Confidence 9888754443 34567889999987655544332 2223344433211 001 1223356788999999999
Q ss_pred CCCEEEEeeCCCeEEEEECC------------------CCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEE
Q 021399 157 LNRTIISAGEDAIVRIWDTE------------------TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218 (313)
Q Consensus 157 ~~~~i~t~~~d~~i~lwd~~------------------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iw 218 (313)
+++++++++.|+.|++||+. .++.+..+. +|...+.+++|+|++++|++++.|+.|++|
T Consensus 153 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~ 229 (372)
T 1k8k_C 153 NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS---SSCGWVHGVCFSANGSRVAWVSHDSTVCLA 229 (372)
T ss_dssp TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC---CCSSCEEEEEECSSSSEEEEEETTTEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecC---CCCCeEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 99999999999999999954 455555443 688899999999999999999999999999
Q ss_pred ECCCCcEEEEEec-CCceeEEEeccCCCEEEEcccccCceeEeeccCC--Ccee------------------eeee---e
Q 021399 219 DARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA--GKFE------------------AKFF---D 274 (313)
Q Consensus 219 d~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~------------------~~~~---~ 274 (313)
|+++++++..+.. ..++.+++|+|++..++++ . ++.+.+|+.+. +.+. ++.| +
T Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~-d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (372)
T 1k8k_C 230 DADKKMAVATLASETLPLLAVTFITESSLVAAG--H-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD 306 (372)
T ss_dssp EGGGTTEEEEEECSSCCEEEEEEEETTEEEEEE--T-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCC
T ss_pred ECCCCceeEEEccCCCCeEEEEEecCCCEEEEE--e-CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcc
Confidence 9999999988864 4589999999988755543 2 34455666555 3221 1111 1
Q ss_pred hhhhhhh------ccc-cccccceeEEEEC-CCC---CeeEEE
Q 021399 275 KILQEEI------GGV-KGHFGPINALAFN-PDG---KRYGFL 306 (313)
Q Consensus 275 ~~~~~~~------~~~-~~h~~~V~~~~fs-pdg---k~~~~~ 306 (313)
.. ++.. ..+ .+|.++|++++|+ ++| +.++..
T Consensus 307 ~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~ 348 (372)
T 1k8k_C 307 KK-ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTT 348 (372)
T ss_dssp CC-C---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEE
T ss_pred cc-cccccCccccccccccccCCcceeEEecCCCcceeeEEEe
Confidence 10 1111 333 4999999999955 777 777654
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.4e-34 Score=246.80 Aligned_cols=272 Identities=15% Similarity=0.186 Sum_probs=213.8
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE---EEEec--CCCCceEEEEECCCCCeEEEeeCCCcEE
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER---LGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAK 77 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~---~~~~~--~H~~~V~~~~~~~~~~~l~s~s~D~~v~ 77 (313)
++...+|...|.+++|+|++++|++++ |+.|++||+.+++. +..+. +|...|.+++|+|+++++++++.|+.|+
T Consensus 44 ~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 122 (337)
T 1gxr_A 44 QINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLS 122 (337)
T ss_dssp EEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEE
T ss_pred cceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 344568999999999999999999999 99999999987753 33333 7999999999999999999999999999
Q ss_pred EEECCCCeE--EEEe-cCCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399 78 LWNVETGAQ--LFTF-NFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (313)
Q Consensus 78 vWd~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (313)
+||+.+++. ...+ .....+..+.|.+++..++.. .+. .+.++++ ..++.+..+..|...+..+.
T Consensus 123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~v~~~d~------~~~~~~~~~~~~~~~i~~~~ 190 (337)
T 1gxr_A 123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDG------NIAVWDL------HNQTLVRQFQGHTDGASCID 190 (337)
T ss_dssp EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTS------CEEEEET------TTTEEEEEECCCSSCEEEEE
T ss_pred EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCC------cEEEEeC------CCCceeeeeecccCceEEEE
Confidence 999998763 3333 245567888999876554443 332 2333332 12456667788999999999
Q ss_pred EccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC
Q 021399 154 WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER 233 (313)
Q Consensus 154 ~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 233 (313)
|+|+++.+++++.|+.|++||+++++.+.... +...+.+++|+|+++++++++.|+.|++||+++++......+..
T Consensus 191 ~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~ 266 (337)
T 1gxr_A 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD----FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHES 266 (337)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEE----CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSS
T ss_pred ECCCCCEEEEEecCCcEEEEECCCCceEeeec----CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCcc
Confidence 99999999999999999999999888766543 66789999999999999999999999999999988765555677
Q ss_pred ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 234 PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
.+.+++|+|++..+++++. + +.+ ++||..+++.+. ...|..+|++++|+|||+.++..
T Consensus 267 ~v~~~~~~~~~~~l~~~~~-d-g~i------------~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~ 324 (337)
T 1gxr_A 267 CVLSLKFAYCGKWFVSTGK-D-NLL------------NAWRTPYGASIF-QSKESSSVLSCDISVDDKYIVTG 324 (337)
T ss_dssp CEEEEEECTTSSEEEEEET-T-SEE------------EEEETTTCCEEE-EEECSSCEEEEEECTTSCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC-C-CcE------------EEEECCCCeEEE-EecCCCcEEEEEECCCCCEEEEe
Confidence 8999999999998776543 2 333 445544443332 23588999999999999988764
No 34
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=4.9e-35 Score=255.78 Aligned_cols=274 Identities=13% Similarity=0.079 Sum_probs=211.7
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc------EEEEecCCCCceEEEEECCC----C---CeEEEe
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE------RLGTYRGHNGAVWCCDVSRD----S---MTLITG 70 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~------~~~~~~~H~~~V~~~~~~~~----~---~~l~s~ 70 (313)
.++.+|.+.|.+++|+| ++|++|+.|+.|++|+..+++ .+..+.+|...|.+++|+|+ + ++|+++
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~ 87 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT 87 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEE
Confidence 36889999999999998 799999999999999999988 78899999999999999999 9 999999
Q ss_pred eCCCcEEEEECCCCeE-----EEEec-C-----CCCeeEEEee----cCCeE-EEE-ECCCceeccccceeeeeee----
Q 021399 71 SADQTAKLWNVETGAQ-----LFTFN-F-----DSPARSVDFA----VGDKL-AVI-TTDPFMELNSAIHVKRIAR---- 129 (313)
Q Consensus 71 s~D~~v~vWd~~~~~~-----~~~~~-~-----~~~~~~~~~~----~~~~~-~~~-~~~~~~~~~~~~~~~~~~~---- 129 (313)
+.|+.|++||+.+++. ...+. + ...+..+.|. +++.. ++. ..+. .+.++++..
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~ 161 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG------TTYIWKFHPFADE 161 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS------CEEEEEEESSSSH
T ss_pred cCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC------cEEEEeCCccccc
Confidence 9999999999987764 44444 3 2788899999 76655 443 3333 334444432
Q ss_pred --CCCCCCCceEEEe-------cCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCc---eeceEEE
Q 021399 130 --DPADQGGESVLIL-------KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGH---KKTITSL 197 (313)
Q Consensus 130 --~~~~~~~~~~~~~-------~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h---~~~v~~~ 197 (313)
..... -.+...+ ..|...+.++.|+|++ .+++++.|+.|++||+++++.+..+....+| ...+.++
T Consensus 162 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i 239 (397)
T 1sq9_A 162 SNSLTLN-WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 239 (397)
T ss_dssp HHHTTTC-CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred cccceee-ccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceE
Confidence 11110 0111123 4578889999999999 9999999999999999988877665432237 8899999
Q ss_pred EECCCCCEEEEeeCC---CcEEEEECCCCcEEEEEe--------------cCCceeEEEeccCCCEEEEcccccCceeEe
Q 021399 198 AKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV--------------TERPVNAVTMSPLLDHVVLGGGQDASAVTT 260 (313)
Q Consensus 198 ~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~--------------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 260 (313)
+|+|++.+|++++.| +.|++||+++++++..+. +...+.+++|+|++..+++++. ++.+.+
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i 317 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW--DGKLRF 317 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET--TSEEEE
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC--CCeEEE
Confidence 999999999999999 999999999999988886 4667999999999988776542 334444
Q ss_pred eccCCCceeeeeeehhhhhhhcccc------cc---------------ccceeEEEECCCCC
Q 021399 261 TDHRAGKFEAKFFDKILQEEIGGVK------GH---------------FGPINALAFNPDGK 301 (313)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~------~h---------------~~~V~~~~fspdgk 301 (313)
||.+ +++.+..+. +| ..+|++++|+|||+
T Consensus 318 wd~~------------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~ 367 (397)
T 1sq9_A 318 WDVK------------TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW 367 (397)
T ss_dssp EETT------------TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred EEcC------------CCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence 5544 444444444 55 99999999999994
No 35
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=9.6e-35 Score=245.65 Aligned_cols=237 Identities=20% Similarity=0.282 Sum_probs=192.1
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
..+.+|..+|.+++|+|++++|++|+.|+.|++||+.+++.+.++++|.+.|.+++|+|++++++||+.|++|++||+++
T Consensus 49 ~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~ 128 (304)
T 2ynn_A 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128 (304)
T ss_dssp EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGG
T ss_pred EEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCC
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Ce-EEEEec-CCCCeeEEEeec-CC-eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc--C
Q 021399 84 GA-QLFTFN-FDSPARSVDFAV-GD-KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP--L 157 (313)
Q Consensus 84 ~~-~~~~~~-~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~ 157 (313)
+. ....+. +...+.++.|.| +. .++.+..+.. +.+|++... ........++...+..+.+.| +
T Consensus 129 ~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~------v~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~ 197 (304)
T 2ynn_A 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT------VKVWSLGQS-----TPNFTLTTGQERGVNYVDYYPLPD 197 (304)
T ss_dssp TTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE------EEEEETTCS-----SCSEEEECCCTTCEEEEEECCSTT
T ss_pred CcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe------EEEEECCCC-----CccceeccCCcCcEEEEEEEEcCC
Confidence 74 334443 466788999998 33 4555544443 334433211 112223345667788888876 6
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCcee
Q 021399 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVN 236 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~ 236 (313)
++++++|+.|+.|++||+++++++..+. +|...|.+++|+|++.+|++|+.||+|++||+++++++.++.. ...+.
T Consensus 198 ~~~l~s~s~D~~i~iWd~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~ 274 (304)
T 2ynn_A 198 KPYMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSW 274 (304)
T ss_dssp CCEEEEEETTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEE
T ss_pred CCEEEEEcCCCeEEEEeCCCCccceeeC---CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEE
Confidence 6799999999999999999988877654 6899999999999999999999999999999999999988864 45788
Q ss_pred EEEeccCCCEE-EEccccc
Q 021399 237 AVTMSPLLDHV-VLGGGQD 254 (313)
Q Consensus 237 ~~~~~p~~~~~-~~~~~~~ 254 (313)
+++++|.+... +++|.++
T Consensus 275 ~~~~~~~~~~~~~asg~~~ 293 (304)
T 2ynn_A 275 CIATHPTGRKNYIASGFDN 293 (304)
T ss_dssp EEEECTTCGGGCEEEEETT
T ss_pred EEEECCCCCceEEEEecCC
Confidence 99999988643 4444443
No 36
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-34 Score=242.53 Aligned_cols=264 Identities=19% Similarity=0.218 Sum_probs=212.6
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
.++.+|.+.|.+++| |++++|++++.||.|++||..+++....+..|.+.|.+++|+|+++.+++++.|+.+++|++..
T Consensus 12 ~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 90 (313)
T 3odt_A 12 ATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFA 90 (313)
T ss_dssp EEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTC
T ss_pred HHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeee
Confidence 368999999999999 9999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C---eEEEEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc-CC
Q 021399 84 G---AQLFTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LN 158 (313)
Q Consensus 84 ~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 158 (313)
. +....+ .+..++..+.+ .+..++.+..+... .+++ .......+..|...+..+.+.| ++
T Consensus 91 ~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i------~~~d--------~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (313)
T 3odt_A 91 TSGEDPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTA------KVWK--------EGSLVYNLQAHNASVWDAKVVSFSE 155 (313)
T ss_dssp CTTSCC-CEECCCSSCEEEEEE-ETTEEEEEETTSEE------EEEE--------TTEEEEEEECCSSCEEEEEEEETTT
T ss_pred cCCCCcccchhhcccCEEEEEe-cCCEEEEEeCCCCE------EEEc--------CCcEEEecccCCCceeEEEEccCCC
Confidence 4 333333 34567777777 45555555544333 2232 2345667778999999999988 88
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeE
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA 237 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~ 237 (313)
+.+++++.|+.|++||.. +....+. ..|...+.+++|+|++. +++++.||.|++||+++++++..+. +...+.+
T Consensus 156 ~~l~~~~~d~~i~i~d~~--~~~~~~~--~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~ 230 (313)
T 3odt_A 156 NKFLTASADKTIKLWQND--KVIKTFS--GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYC 230 (313)
T ss_dssp TEEEEEETTSCEEEEETT--EEEEEEC--SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred CEEEEEECCCCEEEEecC--ceEEEEe--ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEE
Confidence 999999999999999943 3444332 23788999999999998 9999999999999999999998886 5678999
Q ss_pred EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY 303 (313)
Q Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~ 303 (313)
++|+|++ .++++ +.++ .+++||..+++.+..+..|..+|++++|+|||+.+
T Consensus 231 ~~~~~~~-~l~~~-~~dg-------------~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 281 (313)
T 3odt_A 231 IKLLPNG-DIVSC-GEDR-------------TVRIWSKENGSLKQVITLPAISIWSVDCMSNGDII 281 (313)
T ss_dssp EEECTTS-CEEEE-ETTS-------------EEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEE
T ss_pred EEEecCC-CEEEE-ecCC-------------EEEEEECCCCceeEEEeccCceEEEEEEccCCCEE
Confidence 9999998 44443 3332 34566666666667778899999999999999844
No 37
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.1e-34 Score=242.27 Aligned_cols=268 Identities=17% Similarity=0.293 Sum_probs=205.6
Q ss_pred eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec--CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~--~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
.++|+||+++ .|++| .|++|+|||.++++.+..++ +|...|.+++|+|++++++||+.|++|++||+++++.+..+
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~ 105 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 105 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence 4789999986 66654 59999999999999887765 67788999999999999999999999999999999988776
Q ss_pred cCC-CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe
Q 021399 91 NFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (313)
Q Consensus 91 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~ 169 (313)
... .....+.+. +..++....+.... .+. .......+..+.+|...+..+.+.+.++++++++.|+.
T Consensus 106 ~~h~~~~~~~~~~-~~~l~s~~~~~~~~------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~ 173 (318)
T 4ggc_A 106 TSHSARVGSLSWN-SYILSSGSRSGHIH------HHD-----VRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 173 (318)
T ss_dssp ECCSSCEEEEEEE-TTEEEEEETTSEEE------EEE-----TTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred cCccceEEEeecC-CCEEEEEecCCceE------eee-----cCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcc
Confidence 533 233332222 23333333222111 111 11223456677889999999999999999999999999
Q ss_pred EEEEECCCCceeee-cccccCceeceEEEEECCCCCE---EEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCC
Q 021399 170 VRIWDTETGKLLKE-SDKETGHKKTITSLAKAADGSH---FLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 245 (313)
Q Consensus 170 i~lwd~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~---l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~ 245 (313)
|++||+.+++.... ......|...|.++++++++.. +++++.+++|++||.+.............+..++|+|.++
T Consensus 174 i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~ 253 (318)
T 4ggc_A 174 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK 253 (318)
T ss_dssp EEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTT
T ss_pred eeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeeccccc
Confidence 99999987654222 1223457788999999987764 3467889999999999999888888888899999999999
Q ss_pred EEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
.++++++..++ .+++||..+++.+..+.+|.++|++++|+|||++|+-.
T Consensus 254 ~~~~~sg~~d~------------~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~ 302 (318)
T 4ggc_A 254 ELISGHGFAQN------------QLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 302 (318)
T ss_dssp EEEEEECTTTC------------CEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred ceEEEEEcCCC------------EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 98887654433 34567777777788889999999999999999998753
No 38
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-35 Score=258.31 Aligned_cols=288 Identities=14% Similarity=0.222 Sum_probs=214.1
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC----CcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEE
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAK 77 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~----~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~ 77 (313)
|+....|...|.+++|+|++++|++++.|+.|++|++.+ .+.+..+.+|.+.|.+++|+|+ +++|++++.|++|+
T Consensus 60 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~ 139 (416)
T 2pm9_A 60 PIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF 139 (416)
T ss_dssp CSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEE
T ss_pred EEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEE
Confidence 455567999999999999999999999999999999987 4588899999999999999998 88999999999999
Q ss_pred EEECCCCe------EEEEe----cCCCCeeEEEeecC-CeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCC
Q 021399 78 LWNVETGA------QLFTF----NFDSPARSVDFAVG-DKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145 (313)
Q Consensus 78 vWd~~~~~------~~~~~----~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (313)
+||+.+++ ..... .+...+..+.|.++ ..+++.. .+. .+.++++. .+..+..+..+
T Consensus 140 iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~v~iwd~~------~~~~~~~~~~~ 207 (416)
T 2pm9_A 140 IWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSN------FASIWDLK------AKKEVIHLSYT 207 (416)
T ss_dssp BCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSS------CEEEEETT------TTEEEEEECCC
T ss_pred EEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCC------CEEEEECC------CCCcceEEecc
Confidence 99998876 32222 24567888999986 4444443 332 23333321 23344455544
Q ss_pred ------CCceEEEEEccCC-CEEEEeeCCC---eEEEEECCCCc-eeeecccccCceeceEEEEECC-CCCEEEEeeCCC
Q 021399 146 ------QGRINRAVWGPLN-RTIISAGEDA---IVRIWDTETGK-LLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDK 213 (313)
Q Consensus 146 ------~~~i~~~~~~~~~-~~i~t~~~d~---~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg 213 (313)
...+.++.|+|++ ..+++++.|+ .|++||++++. ++..+. .+|...|.+++|+| ++.+|++++.|+
T Consensus 208 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~~l~s~~~dg 285 (416)
T 2pm9_A 208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN--QGHQKGILSLDWCHQDEHLLLSSGRDN 285 (416)
T ss_dssp CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC--SCCSSCEEEEEECSSCSSCEEEEESSS
T ss_pred ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee--cCccCceeEEEeCCCCCCeEEEEeCCC
Confidence 7889999999997 6899999998 99999998763 333221 16889999999999 999999999999
Q ss_pred cEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeee--------------eehhh-
Q 021399 214 SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF--------------FDKIL- 277 (313)
Q Consensus 214 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~- 277 (313)
.|++||+++++++..+. +...+.+++|+|++..++++++.| +.+.+|+.......... |....
T Consensus 286 ~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d-~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (416)
T 2pm9_A 286 TVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFD-NKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSR 364 (416)
T ss_dssp EEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSS-SEEEEEESCCCCCSSCC--------------------
T ss_pred CEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecC-CcEEEEEccCCCCCcccccccccccCCcccccccccc
Confidence 99999999999998886 466799999999985455554444 44666665544322111 11000
Q ss_pred ---hh-----hhccccccccceeEEEECCCCCeeEE
Q 021399 278 ---QE-----EIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 278 ---~~-----~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
.. .+.....|..+|.+++|+|||+.+|+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~ 400 (416)
T 2pm9_A 365 EESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQI 400 (416)
T ss_dssp --CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECB
T ss_pred cccccccccccccCCccccCCccceEEeeCCeEEEE
Confidence 00 00112237889999999999999875
No 39
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=7.9e-34 Score=250.62 Aligned_cols=268 Identities=18% Similarity=0.319 Sum_probs=207.7
Q ss_pred eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec--CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~--~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
++.|.||++ +.|++| .|++|+|||..+++....++ +|...|++++|+|+|++|++|+.|++|++||+++++.+..+
T Consensus 108 ~~~l~wS~~-n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~ 185 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM 185 (420)
T ss_dssp CBCEEECTT-SEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceeEEECCC-CEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEE
Confidence 467999975 466655 59999999999999877665 67788999999999999999999999999999999888776
Q ss_pred cC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe
Q 021399 91 NF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (313)
Q Consensus 91 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~ 169 (313)
.. ...+.++.+. +..++.+..+... ..++. ......+..+.+|...+..+.++|.++++++++.|+.
T Consensus 186 ~~h~~~v~~~s~~-~~~l~sgs~d~~i------~~~d~-----~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~ 253 (420)
T 4gga_A 186 TSHSARVGSLSWN-SYILSSGSRSGHI------HHHDV-----RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL 253 (420)
T ss_dssp CCCSSCEEEEEEE-TTEEEEEETTSEE------EEEET-----TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred eCCCCceEEEeeC-CCEEEEEeCCCce------eEeee-----cccceeeEEecccccceeeeeecCCCCeeeeeecccc
Confidence 53 3445454443 2333333333222 11211 1123456678899999999999999999999999999
Q ss_pred EEEEECCCCceee-ecccccCceeceEEEEECCCCCE-EEE--eeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCC
Q 021399 170 VRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSH-FLT--GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD 245 (313)
Q Consensus 170 i~lwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~-l~s--~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~ 245 (313)
+++||..+++... .......|...|.+++|+|++.. +++ |+.|++|++||+++++++..+.....+.++.|+|.++
T Consensus 254 v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~ 333 (420)
T 4gga_A 254 VNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYK 333 (420)
T ss_dssp EEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTT
T ss_pred ceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCC
Confidence 9999987765321 12223468889999999997654 444 5689999999999999999998888899999999999
Q ss_pred EEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 246 HVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
.+++++|..++. +++||..+++.+..+.+|.++|++++|+|||++++-.
T Consensus 334 ~lv~~sg~~d~~------------I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~ 382 (420)
T 4gga_A 334 ELISGHGFAQNQ------------LVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 382 (420)
T ss_dssp EEEEEECTTTCC------------EEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred eEEEEEecCCCE------------EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 998876644333 4567777777788889999999999999999998754
No 40
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=5.8e-34 Score=282.41 Aligned_cols=289 Identities=20% Similarity=0.315 Sum_probs=235.4
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
+.+.+|.+.|++++|+|+|++|++|+.|+.|++||..+++.+.++.+|.+.|.+++|+|+++++++++.|++|++||+.+
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~ 688 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEec-CCCCeeEEEeecC--CeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC
Q 021399 84 GAQLFTFN-FDSPARSVDFAVG--DKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (313)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (313)
++.+..+. +...+.++.|.++ ..+++. ..+. .+.+|++. .+..+..+.+|.+.|..+.|+|+++
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~------~v~vwd~~------~~~~~~~~~~h~~~v~~~~~sp~~~ 756 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF------FLKLWDLN------QKECRNTMFGHTNSVNHCRFSPDDE 756 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTS------CEEEEETT------SSSEEEEECCCSSCEEEEEECSSTT
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCC------eEEEEECC------CcchhheecCCCCCEEEEEEecCCC
Confidence 98887765 4567888899874 333333 3332 23344332 3456677889999999999999999
Q ss_pred EEEEeeCCCeEEEEECCCCceeeeccc----------------------------------------------------c
Q 021399 160 TIISAGEDAIVRIWDTETGKLLKESDK----------------------------------------------------E 187 (313)
Q Consensus 160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~----------------------------------------------------~ 187 (313)
.+++++.|+.|++||+.++.....+.. .
T Consensus 757 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~ 836 (1249)
T 3sfz_A 757 LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH 836 (1249)
T ss_dssp EEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred EEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEc
Confidence 999999999999999877654332210 1
Q ss_pred cCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCC-
Q 021399 188 TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA- 265 (313)
Q Consensus 188 ~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~- 265 (313)
.+|...+.+++|+|++.++++++.||.|++||++++.++..+. +...+.+++|+|++..+++++.+ +.+.+|+...
T Consensus 837 ~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~d--g~v~vw~~~~~ 914 (1249)
T 3sfz_A 837 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD--QTIRVWETKKV 914 (1249)
T ss_dssp CSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT--SCEEEEEHHHH
T ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCC--CeEEEEEcccc
Confidence 1577889999999999999999999999999999999888875 45679999999999887766543 2344444210
Q ss_pred ------------------------------------------------------------------Cceeeeeeehhhhh
Q 021399 266 ------------------------------------------------------------------GKFEAKFFDKILQE 279 (313)
Q Consensus 266 ------------------------------------------------------------------~~~~~~~~~~~~~~ 279 (313)
....+++|+..+++
T Consensus 915 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~ 994 (1249)
T 3sfz_A 915 CKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNR 994 (1249)
T ss_dssp HSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTS
T ss_pred ceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCc
Confidence 11246788888888
Q ss_pred hhccccccccceeEEEECCCCCeeEEE
Q 021399 280 EIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 280 ~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
.+..+.+|.+.|++++|+|||+.++..
T Consensus 995 ~~~~~~~h~~~v~~l~~s~dg~~l~s~ 1021 (1249)
T 3sfz_A 995 VFSSGVGHKKAVRHIQFTADGKTLISS 1021 (1249)
T ss_dssp CEEECCCCSSCCCCEEECSSSSCEEEE
T ss_pred eeeecccCCCceEEEEECCCCCEEEEE
Confidence 888888999999999999999988764
No 41
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.8e-34 Score=249.34 Aligned_cols=236 Identities=18% Similarity=0.193 Sum_probs=178.0
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE----EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG----TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~----~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
..+|...|.+++|+|++. +++++.|+.|+|||+.+++... ...+|.+.|.+++|+|++++|++|+.|++|++||+
T Consensus 90 ~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~ 168 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDL 168 (357)
T ss_dssp EEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEET
T ss_pred cCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence 457899999999999985 5568889999999998886543 34589999999999999999999999999999999
Q ss_pred CCCeEEEEec-CCCCeeEEEeecCC--eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399 82 ETGAQLFTFN-FDSPARSVDFAVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (313)
Q Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (313)
++++.+..+. +...+..+.|++++ .++....+..+ .+|++... ..........+...+.+++|+|++
T Consensus 169 ~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v------~~wd~~~~----~~~~~~~~~~~~~~v~~v~~sp~~ 238 (357)
T 4g56_B 169 SQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRI------LLWDTRKP----KPATRIDFCASDTIPTSVTWHPEK 238 (357)
T ss_dssp TTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCE------EECCTTSS----SCBCBCCCTTCCSCEEEEEECTTS
T ss_pred CCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCce------EEEECCCC----ceeeeeeeccccccccchhhhhcc
Confidence 9999887775 45678888998754 34444444433 33332111 011112233456778999999974
Q ss_pred -CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCC-CEEEEeeCCCcEEEEECCCCcEEEEEecCCcee
Q 021399 159 -RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG-SHFLTGSLDKSAKLWDARTLELIKTYVTERPVN 236 (313)
Q Consensus 159 -~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 236 (313)
.++++|+.|+.|++||++++++++.+. +|...|++++|+|++ .+|++|+.|++|++||+++++++..+.+...|.
T Consensus 239 ~~~la~g~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~ 315 (357)
T 4g56_B 239 DDTFACGDETGNVSLVNIKNPDSAQTSA---VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVT 315 (357)
T ss_dssp TTEEEEEESSSCEEEEESSCGGGCEEEC---CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEE
T ss_pred cceEEEeecccceeEEECCCCcEeEEEe---ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEE
Confidence 678899999999999999888776553 688999999999987 579999999999999999999988887788999
Q ss_pred EEEeccCCCEEEEcccccC
Q 021399 237 AVTMSPLLDHVVLGGGQDA 255 (313)
Q Consensus 237 ~~~~~p~~~~~~~~~~~~~ 255 (313)
+++|+|....++++++.|+
T Consensus 316 ~vafsP~d~~~l~s~s~Dg 334 (357)
T 4g56_B 316 GVAWSPLDHSKFTTVGWDH 334 (357)
T ss_dssp EEEECSSSTTEEEEEETTS
T ss_pred EEEEeCCCCCEEEEEcCCC
Confidence 9999995443444445443
No 42
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=3.4e-34 Score=272.52 Aligned_cols=274 Identities=15% Similarity=0.205 Sum_probs=227.1
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
..+.+|.+.|.+++|+|+|++|++++.||.|+|||..+++.+.++.+|.+.|.+++|+|++++|++++.||.|++||+.+
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 86 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT 86 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc-CCCEE
Q 021399 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LNRTI 161 (313)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~i 161 (313)
++.+..+. +...+..+.|++++..++.... ++.+.++++.. .......+.+|...+.++.|+| ++..+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~vw~~~~-----~~~~~~~~~~~~~~v~~~~~~p~~~~~l 156 (814)
T 3mkq_A 87 GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-----DLTVKLWNWEN-----NWALEQTFEGHEHFVMCVAFNPKDPSTF 156 (814)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSEEEEEET-----TSEEEEEEGGG-----TSEEEEEEECCSSCEEEEEEETTEEEEE
T ss_pred CcEEEEEecCCCCEEEEEEeCCCCEEEEEcC-----CCEEEEEECCC-----CceEEEEEcCCCCcEEEEEEEcCCCCEE
Confidence 98887765 5678899999987765444322 22233443321 1245567788999999999999 78899
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC--CCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEE
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAV 238 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~ 238 (313)
++++.|+.|++||+.++....... ..+...+.+++|+| ++.+|++++.||.|++||+++++++..+. +...+.++
T Consensus 157 ~~~~~dg~v~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~ 234 (814)
T 3mkq_A 157 ASGCLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFA 234 (814)
T ss_dssp EEEETTSEEEEEETTCSSCSEEEE--CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred EEEeCCCeEEEEECCCCcceeEEe--cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEE
Confidence 999999999999998776554433 23457899999999 99999999999999999999999988886 46689999
Q ss_pred EeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY 303 (313)
Q Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~ 303 (313)
+|+|+++.+++++. ++ .+++||..+++.+..+..|..+|++++|+|+|+.+
T Consensus 235 ~~~~~~~~l~~~~~-dg-------------~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 285 (814)
T 3mkq_A 235 VFHPTLPIIISGSE-DG-------------TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKN 285 (814)
T ss_dssp EECSSSSEEEEEET-TS-------------CEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGG
T ss_pred EEcCCCCEEEEEeC-CC-------------eEEEEECCCCcEEEEeecCCCcEEEEEEccCCCce
Confidence 99999997766543 22 24566666666667778889999999999999853
No 43
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.1e-33 Score=241.07 Aligned_cols=233 Identities=21% Similarity=0.307 Sum_probs=194.9
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC----cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~----~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd 80 (313)
.+..|...|.+++|+|+|++|++|+.|+.+++|++.+. +....+.+|.+.|.++.|+++++ +++++.|++|++||
T Consensus 92 ~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd 170 (340)
T 1got_B 92 AIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWD 170 (340)
T ss_dssp EEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred EeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEE
Confidence 56789999999999999999999999999999999875 35677899999999999998775 88999999999999
Q ss_pred CCCCeEEEEec-CCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399 81 VETGAQLFTFN-FDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (313)
Q Consensus 81 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (313)
+.+++.+..+. +...+..+.|.|++..++.. .+. .+.+|++. .+.....+.+|...|.+++|+|++
T Consensus 171 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~------~v~~wd~~------~~~~~~~~~~h~~~v~~v~~~p~~ 238 (340)
T 1got_B 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA------SAKLWDVR------EGMCRQTFTGHESDINAICFFPNG 238 (340)
T ss_dssp TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETT------TCSEEEEECCCSSCEEEEEECTTS
T ss_pred CCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCC------cEEEEECC------CCeeEEEEcCCcCCEEEEEEcCCC
Confidence 99998887765 45678899999877655443 333 33444332 244667788999999999999999
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeE
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNA 237 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~ 237 (313)
++|++|+.|+.|++||+++++.+..+. ...+...|.+++|+|+|.+|++|+.|+.|++||+.+++++..+. +...+.+
T Consensus 239 ~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~ 317 (340)
T 1got_B 239 NAFATGSDDATCRLFDLRADQELMTYS-HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSC 317 (340)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEEC-CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred CEEEEEcCCCcEEEEECCCCcEEEEEc-cCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEE
Confidence 999999999999999999887665543 22345579999999999999999999999999999999888876 4678999
Q ss_pred EEeccCCCEEEEcc
Q 021399 238 VTMSPLLDHVVLGG 251 (313)
Q Consensus 238 ~~~~p~~~~~~~~~ 251 (313)
++|+|++..+++++
T Consensus 318 ~~~s~dg~~l~s~s 331 (340)
T 1got_B 318 LGVTDDGMAVATGS 331 (340)
T ss_dssp EEECTTSSCEEEEE
T ss_pred EEEcCCCCEEEEEc
Confidence 99999998877654
No 44
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-34 Score=249.14 Aligned_cols=244 Identities=17% Similarity=0.247 Sum_probs=189.9
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCC--CCcEEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEEEE
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLW 79 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~--~~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~vW 79 (313)
.++.+|.+.|.+++|+|++++|++|+.|+.|+|||+. +.+.+..+.+|.+.|++++|+++ +++|++|+.|++|++|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 5789999999999999999999999999999999998 55678889999999999999977 8999999999999999
Q ss_pred ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC--
Q 021399 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-- 157 (313)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 157 (313)
|+.+++.. .+..+..|...|.++.|+|+
T Consensus 85 d~~~~~~~--------------------------------------------------~~~~~~~~~~~v~~~~~~~~~~ 114 (379)
T 3jrp_A 85 KEENGRWS--------------------------------------------------QIAVHAVHSASVNSVQWAPHEY 114 (379)
T ss_dssp EEETTEEE--------------------------------------------------EEEEECCCSSCEEEEEECCGGG
T ss_pred EcCCCcee--------------------------------------------------EeeeecCCCcceEEEEeCCCCC
Confidence 98775421 11223456778999999999
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC-------------CCCEEEEeeCCCcEEEEECCCCc
Q 021399 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-------------DGSHFLTGSLDKSAKLWDARTLE 224 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-------------~~~~l~s~s~dg~i~iwd~~~~~ 224 (313)
+.++++++.|+.|++||+......... ...+|...|.+++|+| ++.+|++++.|+.|++||++++.
T Consensus 115 ~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 193 (379)
T 3jrp_A 115 GPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 193 (379)
T ss_dssp CSEEEEEETTSEEEEEECCTTSCCCEE-EEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT
T ss_pred CCEEEEecCCCcEEEEecCCCCceeeE-EecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC
Confidence 899999999999999999876433222 1236888999999999 69999999999999999998765
Q ss_pred E----EEEEe-cCCceeEEEeccCC--CEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEEC
Q 021399 225 L----IKTYV-TERPVNAVTMSPLL--DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFN 297 (313)
Q Consensus 225 ~----~~~~~-~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fs 297 (313)
. +..+. +...+.+++|+|++ ...+++++.|+ .+.+||.+.+.... ...+.....|...|++++|+
T Consensus 194 ~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~-------~~~~~~~~~~~~~v~~~~~s 265 (379)
T 3jrp_A 194 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-TCIIWTQDNEQGPW-------KKTLLKEEKFPDVLWRASWS 265 (379)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS-CEEEEEESSTTSCC-------EEEESSSSCCSSCEEEEEEC
T ss_pred cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC-EEEEEeCCCCCccc-------eeeeeccccCCCcEEEEEEc
Confidence 3 33333 45679999999994 34444444433 34444443322110 11222344589999999999
Q ss_pred CCCCeeEEE
Q 021399 298 PDGKRYGFL 306 (313)
Q Consensus 298 pdgk~~~~~ 306 (313)
|||+.++..
T Consensus 266 ~~g~~l~~~ 274 (379)
T 3jrp_A 266 LSGNVLALS 274 (379)
T ss_dssp SSSCCEEEE
T ss_pred CCCCEEEEe
Confidence 999988765
No 45
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.8e-33 Score=245.07 Aligned_cols=221 Identities=20% Similarity=0.335 Sum_probs=178.2
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
..|.+++|+|+|++|++|+.|+.|+|||+.+++.+..+.+|...|.+++|+|+++.|++++.|++|++||+++++....+
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred cCCCCeeEEEeec-CCeE-EEEECCCceeccccceeeeeeeCCCCCCCceEEE-------ecCCCCceEEEEEccCCCEE
Q 021399 91 NFDSPARSVDFAV-GDKL-AVITTDPFMELNSAIHVKRIARDPADQGGESVLI-------LKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 91 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~i 161 (313)
.....+..+.+.+ ++.. +.+..+... +++++. .+..+.. ..+|...|.++.|+|+++++
T Consensus 204 ~~~~~v~~~~~~~~~~~~l~~~s~d~~v------~iwd~~------~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l 271 (393)
T 1erj_A 204 SIEDGVTTVAVSPGDGKYIAAGSLDRAV------RVWDSE------TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV 271 (393)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEETTSCE------EEEETT------TCCEEEEEC------CCCSSCEEEEEECTTSSEE
T ss_pred EcCCCcEEEEEECCCCCEEEEEcCCCcE------EEEECC------CCcEEEeecccccCCCCCCCCEEEEEECCCCCEE
Confidence 7777888888987 4444 444444332 333221 1112222 25788999999999999999
Q ss_pred EEeeCCCeEEEEECCCCceeee---------cccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-c
Q 021399 162 ISAGEDAIVRIWDTETGKLLKE---------SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-T 231 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~---------~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~ 231 (313)
++|+.|+.|++||+.+...... .....+|...|.++++++++.+|++|+.|+.|++||+++++++..+. +
T Consensus 272 ~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h 351 (393)
T 1erj_A 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGH 351 (393)
T ss_dssp EEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred EEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCC
Confidence 9999999999999875432110 01123688899999999999999999999999999999999988876 4
Q ss_pred CCceeEEEeccC
Q 021399 232 ERPVNAVTMSPL 243 (313)
Q Consensus 232 ~~~~~~~~~~p~ 243 (313)
...+.+++|+|.
T Consensus 352 ~~~v~~v~~~~~ 363 (393)
T 1erj_A 352 RNSVISVAVANG 363 (393)
T ss_dssp SSCEEEEEECSS
T ss_pred CCCEEEEEecCC
Confidence 567999998873
No 46
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.2e-34 Score=245.43 Aligned_cols=239 Identities=19% Similarity=0.283 Sum_probs=183.5
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
...+|.+.|.+++|+|+|++|++|+.|+.++||+..++. .+.++++|.+.|.+++|+|++++|++|+.|++|++||+.
T Consensus 56 ~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~ 135 (345)
T 3fm0_A 56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135 (345)
T ss_dssp ECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred eccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECC
Confidence 347899999999999999999999999999999988764 578899999999999999999999999999999999997
Q ss_pred CCeE---EEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399 83 TGAQ---LFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (313)
Q Consensus 83 ~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (313)
++.. +..+. +...+..+.|+|++..++. ..+.. +.+++.... .......+.+|.+.|.+++|+|+
T Consensus 136 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~------i~~w~~~~~----~~~~~~~~~~h~~~v~~l~~sp~ 205 (345)
T 3fm0_A 136 EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDT------VKLYREEED----DWVCCATLEGHESTVWSLAFDPS 205 (345)
T ss_dssp TTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSC------EEEEEEETT----EEEEEEEECCCSSCEEEEEECTT
T ss_pred CCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCc------EEEEEecCC----CEEEEEEecCCCCceEEEEECCC
Confidence 7532 33332 4567888999987654443 33332 333433211 11234567899999999999999
Q ss_pred CCEEEEeeCCCeEEEEECCCCc---------------eeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399 158 NRTIISAGEDAIVRIWDTETGK---------------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~~~---------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (313)
+++|++++.|++|++||..... ++..+. ..|...|.+++|+|++..|++++.|+.|++|+.++
T Consensus 206 g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 206 GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLS--GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDP 283 (345)
T ss_dssp SSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEEC--SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECT
T ss_pred CCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEec--CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCC
Confidence 9999999999999999963221 111111 13788999999999999999999999999999875
Q ss_pred Cc----E----EEEE--ecCCceeEEEeccCCCEEEEcccccC
Q 021399 223 LE----L----IKTY--VTERPVNAVTMSPLLDHVVLGGGQDA 255 (313)
Q Consensus 223 ~~----~----~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~ 255 (313)
.. + .... .+...+++++|+|++..++++++.|+
T Consensus 284 ~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg 326 (345)
T 3fm0_A 284 NSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG 326 (345)
T ss_dssp TSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTS
T ss_pred CCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCC
Confidence 42 1 1111 24567999999999876666666554
No 47
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-33 Score=245.58 Aligned_cols=276 Identities=18% Similarity=0.228 Sum_probs=216.4
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC-CCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
..+|...+.+..+++++..+++++.|+.|++||..+++....+.. |...|.+++|+|++++|++|+.||.|++||+.++
T Consensus 87 ~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 166 (401)
T 4aez_A 87 APGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ 166 (401)
T ss_dssp CTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred CCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC
Confidence 346766655544444456788999999999999999998887776 8999999999999999999999999999999998
Q ss_pred eEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (313)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t 163 (313)
+.+..+. +...+..+.|. +..++.+..+.. +.++++. .....+..+.+|.+.|.++.|+|+++++++
T Consensus 167 ~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~------i~i~d~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s 234 (401)
T 4aez_A 167 TKLRTMAGHQARVGCLSWN-RHVLSSGSRSGA------IHHHDVR-----IANHQIGTLQGHSSEVCGLAWRSDGLQLAS 234 (401)
T ss_dssp CEEEEECCCSSCEEEEEEE-TTEEEEEETTSE------EEEEETT-----SSSCEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred eEEEEecCCCCceEEEEEC-CCEEEEEcCCCC------EEEEecc-----cCcceeeEEcCCCCCeeEEEEcCCCCEEEE
Confidence 8877664 45677778773 445555544432 2333321 123456677889999999999999999999
Q ss_pred eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC-EEEEee--CCCcEEEEECCCCcEEEEEecCCceeEEEe
Q 021399 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGS--LDKSAKLWDARTLELIKTYVTERPVNAVTM 240 (313)
Q Consensus 164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 240 (313)
++.|+.|++||+.+++.+..+. .|...|.+++|+|++. .+++++ .|+.|++||+++++++..+.....+.+++|
T Consensus 235 ~~~d~~v~iwd~~~~~~~~~~~---~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~ 311 (401)
T 4aez_A 235 GGNDNVVQIWDARSSIPKFTKT---NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIW 311 (401)
T ss_dssp EETTSCEEEEETTCSSEEEEEC---CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEE
T ss_pred EeCCCeEEEccCCCCCccEEec---CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEE
Confidence 9999999999999887766543 5888999999999765 555654 799999999999999999988889999999
Q ss_pred ccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
+|++..+++++|..++.+.+||.+.+.. .....+.+|.++|++++|+|||+.++..
T Consensus 312 s~~~~~l~~~~g~~dg~i~v~~~~~~~~----------~~~~~~~~h~~~v~~~~~s~dg~~l~s~ 367 (401)
T 4aez_A 312 SPHSKEIMSTHGFPDNNLSIWSYSSSGL----------TKQVDIPAHDTRVLYSALSPDGRILSTA 367 (401)
T ss_dssp CSSSSEEEEEECTTTCEEEEEEEETTEE----------EEEEEEECCSSCCCEEEECTTSSEEEEE
T ss_pred CCCCCeEEEEeecCCCcEEEEecCCccc----------eeEEEecCCCCCEEEEEECCCCCEEEEE
Confidence 9999999887665555555555433222 1222356899999999999999988764
No 48
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.4e-34 Score=254.27 Aligned_cols=282 Identities=14% Similarity=0.145 Sum_probs=204.3
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-----------EEEEecCCC------------CceEEEEECCCC
Q 021399 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-----------RLGTYRGHN------------GAVWCCDVSRDS 64 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-----------~~~~~~~H~------------~~V~~~~~~~~~ 64 (313)
.|.+.|.+++|+|+|++|++|+.||.|+||++.+++ ....+.+|. +.|.+++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999999877 578899998 889999999998
Q ss_pred --CeEEEeeCCCcEEEEECCCCeEEE---------------------------------------E--ecCCCCeeEEEe
Q 021399 65 --MTLITGSADQTAKLWNVETGAQLF---------------------------------------T--FNFDSPARSVDF 101 (313)
Q Consensus 65 --~~l~s~s~D~~v~vWd~~~~~~~~---------------------------------------~--~~~~~~~~~~~~ 101 (313)
..|++++.|++|++||+.+++... . ..+...+.++.|
T Consensus 106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 185 (447)
T 3dw8_B 106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI 185 (447)
T ss_dssp SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence 789999999999999987644321 1 124567888999
Q ss_pred ecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEE-------EecCCCCceEEEEEccCC-CEEEEeeCCCeEEEE
Q 021399 102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-------ILKGPQGRINRAVWGPLN-RTIISAGEDAIVRIW 173 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~i~~~~~~~~~-~~i~t~~~d~~i~lw 173 (313)
++++..++...+.. +.+|++.. ...... .+.+|...|.++.|+|++ +.+++|+.|+.|++|
T Consensus 186 ~~~~~~l~s~~d~~------i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 254 (447)
T 3dw8_B 186 NSDYETYLSADDLR------INLWHLEI-----TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLC 254 (447)
T ss_dssp CTTSSEEEEECSSE------EEEEETTE-----EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred cCCCCEEEEeCCCe------EEEEECCC-----CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEE
Confidence 98776666544433 33333221 011111 245788999999999998 999999999999999
Q ss_pred ECCCCce----eeecccccCcee------------ceEEEEECCCCCEEEEeeCCCcEEEEECCC-CcEEEEEecCCc--
Q 021399 174 DTETGKL----LKESDKETGHKK------------TITSLAKAADGSHFLTGSLDKSAKLWDART-LELIKTYVTERP-- 234 (313)
Q Consensus 174 d~~~~~~----~~~~~~~~~h~~------------~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~-- 234 (313)
|+++++. +..+. +|.. .|.+++|+|++.+|++++. +.|++||+++ ++++..+.....
T Consensus 255 d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~ 330 (447)
T 3dw8_B 255 DMRASALCDRHSKLFE---EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLR 330 (447)
T ss_dssp ETTTCSSSCTTCEEEC---CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGT
T ss_pred ECcCCccccceeeEec---cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccc
Confidence 9988775 33332 3444 8999999999999999999 9999999997 777777754432
Q ss_pred --------------eeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhh--------------------h
Q 021399 235 --------------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE--------------------E 280 (313)
Q Consensus 235 --------------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 280 (313)
+..++|+|++..+++++ . ++.+.+||...+......-.....+ .
T Consensus 331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s-~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (447)
T 3dw8_B 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGS-Y-NNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEI 408 (447)
T ss_dssp TTHHHHHHTSGGGCCCCEEECTTSSEEEEEC-S-TTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCE
T ss_pred ccccccccccccccceEEEECCCCCEEEEec-c-CCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccc
Confidence 22399999999876543 3 3456777766554321000000000 0
Q ss_pred hccccccccceeEEEECCCCCeeEEE
Q 021399 281 IGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 281 ~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
......+...|..++|+|+|+.+|..
T Consensus 409 ~~~~~~~~~~i~~~~~~p~~~~la~~ 434 (447)
T 3dw8_B 409 SVDSLDFNKKILHTAWHPKENIIAVA 434 (447)
T ss_dssp EGGGCCTTSCCCEEEECSSSSEEEEE
T ss_pred cccccccCCceeEEEECCCCCEEEEE
Confidence 00011356789999999999999864
No 49
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-33 Score=242.26 Aligned_cols=229 Identities=18% Similarity=0.248 Sum_probs=178.9
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
.+.+|...|.+++|+|++.+|++|+.|++|++||+.+++.+.++.+|.+.|.+++|+|+++.+++++.|++|++||+...
T Consensus 71 ~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 71 ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150 (343)
T ss_dssp EECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred hhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999844
Q ss_pred eEEEEe---cCCCCeeEEEeecCC-----------eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceE
Q 021399 85 AQLFTF---NFDSPARSVDFAVGD-----------KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN 150 (313)
Q Consensus 85 ~~~~~~---~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (313)
...... .+...+.++.|.|.. .++.+..+.. +.+|+ ........+.+|.+.|.
T Consensus 151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~------i~iwd-------~~~~~~~~~~~h~~~v~ 217 (343)
T 2xzm_R 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR------LKVWN-------TNFQIRYTFKAHESNVN 217 (343)
T ss_dssp EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSE------EEEEE-------TTTEEEEEEECCSSCEE
T ss_pred ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCE------EEEEc-------CCCceeEEEcCccccce
Confidence 332222 234467788888753 3444433332 33333 12345567788999999
Q ss_pred EEEEccCCCEEEEeeCCCeEEEEECCC-CceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEE--
Q 021399 151 RAVWGPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK-- 227 (313)
Q Consensus 151 ~~~~~~~~~~i~t~~~d~~i~lwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~-- 227 (313)
+++|+|++++|++|+.|+.|++||+.. ......+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++...
T Consensus 218 ~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~----~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~ 292 (343)
T 2xzm_R 218 HLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF----DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVC 292 (343)
T ss_dssp EEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE----ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCcccceee----cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceE
Confidence 999999999999999999999999843 3332222 1345699999999998765 5568889999998866433
Q ss_pred EEe------------cCCceeEEEeccCCCEEEEcc
Q 021399 228 TYV------------TERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 228 ~~~------------~~~~~~~~~~~p~~~~~~~~~ 251 (313)
.+. +...+.+++|+|++..+++++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~ 328 (343)
T 2xzm_R 293 TIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGF 328 (343)
T ss_dssp ECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEE
T ss_pred EeecCcchhhhhhcCCCCceEEEEECCCCCeEEEec
Confidence 332 234588999999999877654
No 50
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.1e-33 Score=245.78 Aligned_cols=277 Identities=21% Similarity=0.298 Sum_probs=210.0
Q ss_pred ccccccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEec-------------CCCCceEEEEECC-CCCeEE
Q 021399 4 ILMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYR-------------GHNGAVWCCDVSR-DSMTLI 68 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~-------------~H~~~V~~~~~~~-~~~~l~ 68 (313)
.++++|.+.|.+++|+| ++++|++|+.||.|++||+.+++....+. +|...|.+++|+| ++++|+
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 116 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT 116 (408)
T ss_dssp EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence 46788999999999999 99999999999999999999886654443 6999999999999 778999
Q ss_pred EeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCC----eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC
Q 021399 69 TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGD----KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 144 (313)
Q Consensus 69 s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (313)
+++.|+.|++||+.+++....+........+.+.+.. .++....+. .+.++++. .+..+..+.+
T Consensus 117 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~d~~------~~~~~~~~~~ 184 (408)
T 4a11_B 117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP------KVQLCDLK------SGSCSHILQG 184 (408)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS------SEEEEESS------SSCCCEEECC
T ss_pred EEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCC------eEEEEeCC------CcceeeeecC
Confidence 9999999999999999988888877888888887633 333333332 23333332 2334566778
Q ss_pred CCCceEEEEEccCCC-EEEEeeCCCeEEEEECCCCc-eeeecc------------cccCceeceEEEEECCCCCEEEEee
Q 021399 145 PQGRINRAVWGPLNR-TIISAGEDAIVRIWDTETGK-LLKESD------------KETGHKKTITSLAKAADGSHFLTGS 210 (313)
Q Consensus 145 ~~~~i~~~~~~~~~~-~i~t~~~d~~i~lwd~~~~~-~~~~~~------------~~~~h~~~v~~~~~s~~~~~l~s~s 210 (313)
|.+.|.++.|+|+++ .+++++.|+.|++||++++. .+..+. ...+|...|.+++|+|++++|++++
T Consensus 185 ~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 264 (408)
T 4a11_B 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVG 264 (408)
T ss_dssp CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEec
Confidence 999999999999998 58899999999999997654 222221 1146889999999999999999999
Q ss_pred CCCcEEEEECCCCcEEEEEecC------CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccc
Q 021399 211 LDKSAKLWDARTLELIKTYVTE------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV 284 (313)
Q Consensus 211 ~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (313)
.||.|++||+++++....+... ..............+++++ .+ . .+++||..+++.+..+
T Consensus 265 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~------------~i~v~d~~~~~~~~~~ 330 (408)
T 4a11_B 265 TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVP-YG-S------------TIAVYTVYSGEQITML 330 (408)
T ss_dssp TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEE-ET-T------------EEEEEETTTCCEEEEE
T ss_pred CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEe-cC-C------------EEEEEECcCCcceeee
Confidence 9999999999998765443211 1111111122223333322 22 1 3567777777777888
Q ss_pred cccccceeEEEECCCCCeeEEE
Q 021399 285 KGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 285 ~~h~~~V~~~~fspdgk~~~~~ 306 (313)
.+|.+.|++++|+|||+.++..
T Consensus 331 ~~~~~~v~~~~~s~~~~~l~s~ 352 (408)
T 4a11_B 331 KGHYKTVDCCVFQSNFQELYSG 352 (408)
T ss_dssp CCCSSCEEEEEEETTTTEEEEE
T ss_pred ccCCCeEEEEEEcCCCCEEEEE
Confidence 8999999999999999988754
No 51
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-34 Score=255.51 Aligned_cols=283 Identities=14% Similarity=0.147 Sum_probs=194.4
Q ss_pred cccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCC---Cc---EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEE
Q 021399 7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADN---GE---RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW 79 (313)
Q Consensus 7 ~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~---~~---~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vW 79 (313)
.+|.+.|.+++|+| ++++|++|+.|+.|+|||+.+ +. ....+ +|.+.|.+++|+|++++|++|+.|++|++|
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg~i~vw 138 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDGQIIVL 138 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCCEEEEE
Confidence 88999999999999 999999999999999999876 43 22233 599999999999999999999999999999
Q ss_pred ECC---CCeEEEEec-------------CCCCeeEEE--eecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE
Q 021399 80 NVE---TGAQLFTFN-------------FDSPARSVD--FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 141 (313)
Q Consensus 80 d~~---~~~~~~~~~-------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (313)
|++ +++...... .......+. +.+++..++.... +..+.++++. .+..+..
T Consensus 139 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----d~~i~iwd~~------~~~~~~~ 207 (437)
T 3gre_A 139 KVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN-----LSRVIIFDIR------TLERLQI 207 (437)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET-----TSEEEEEETT------TCCEEEE
T ss_pred EeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC-----CCeEEEEeCC------CCeeeEE
Confidence 995 443332221 112233333 2233433333221 2223334331 2445666
Q ss_pred ecC--CCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEEC----CCCCEEEEeeCCCcE
Q 021399 142 LKG--PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKA----ADGSHFLTGSLDKSA 215 (313)
Q Consensus 142 ~~~--~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s----~~~~~l~s~s~dg~i 215 (313)
+.+ |.+.|.+++|+|+++++++|+.|+.|++||+++++++..+.. .|...|.+++++ +++.+|++|+.||.|
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i 285 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF--GDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC--TTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec--CCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence 666 788999999999999999999999999999999887765432 477789999554 568899999999999
Q ss_pred EEEECCCCcEEEEEe---------------------------cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCce
Q 021399 216 KLWDARTLELIKTYV---------------------------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF 268 (313)
Q Consensus 216 ~iwd~~~~~~~~~~~---------------------------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (313)
++||+++++++..+. +...+.+++|+ .+ ..+++++.| ..+.+||.+.+..
T Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l~s~~~d-~~i~~wd~~~~~~ 362 (437)
T 3gre_A 286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KILLTDEAT-SSIVMFSLNELSS 362 (437)
T ss_dssp EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEEEEEGGG-TEEEEEETTCGGG
T ss_pred EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEEEecCCC-CeEEEEECCCccc
Confidence 999999999888876 22347778888 44 444444444 3466666554432
Q ss_pred eeeee-------------------------ehhhhhhhccccccccceeEEEECCC--CCeeEEE
Q 021399 269 EAKFF-------------------------DKILQEEIGGVKGHFGPINALAFNPD--GKRYGFL 306 (313)
Q Consensus 269 ~~~~~-------------------------~~~~~~~~~~~~~h~~~V~~~~fspd--gk~~~~~ 306 (313)
...+. +......+.....|...|++++|+++ ++.++..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~ 427 (437)
T 3gre_A 363 SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVAC 427 (437)
T ss_dssp CEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEE
T ss_pred ceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEE
Confidence 21111 11122222334459999999999999 5555543
No 52
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=3.5e-34 Score=251.35 Aligned_cols=235 Identities=22% Similarity=0.336 Sum_probs=189.9
Q ss_pred cccccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCC-------cEEEEecCCCCceEEEEECCCC-CeEEEeeCCCc
Q 021399 5 LMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNG-------ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQT 75 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~-------~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~ 75 (313)
.+.+|.+.|.+++|+| ++++|++|+.|+.|+|||+.++ +.+..+.+|...|.+++|+|++ ++|++++.|++
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 5789999999999999 9999999999999999999988 5678899999999999999998 69999999999
Q ss_pred EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399 76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (313)
Q Consensus 76 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (313)
|++||+++++.+..+. ..+|...|.++.|+
T Consensus 156 i~iwd~~~~~~~~~~~--------------------------------------------------~~~~~~~v~~~~~~ 185 (402)
T 2aq5_A 156 ILVWDVGTGAAVLTLG--------------------------------------------------PDVHPDTIYSVDWS 185 (402)
T ss_dssp EEEEETTTTEEEEEEC--------------------------------------------------TTTCCSCEEEEEEC
T ss_pred EEEEECCCCCccEEEe--------------------------------------------------cCCCCCceEEEEEC
Confidence 9999998875432210 03467789999999
Q ss_pred cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceec-eEEEEECCCCCEEEEe---eCCCcEEEEECCCCcE---EEE
Q 021399 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKT-ITSLAKAADGSHFLTG---SLDKSAKLWDARTLEL---IKT 228 (313)
Q Consensus 156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~---s~dg~i~iwd~~~~~~---~~~ 228 (313)
|++++|++++.|+.|++||+++++.+..+. .+|... +.+++|+|++.+|++| +.|+.|++||+++++. ...
T Consensus 186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~ 263 (402)
T 2aq5_A 186 RDGALICTSCRDKRVRVIEPRKGTVVAEKD--RPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE 263 (402)
T ss_dssp TTSSCEEEEETTSEEEEEETTTTEEEEEEE--CSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE
T ss_pred CCCCEEEEEecCCcEEEEeCCCCceeeeec--cCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe
Confidence 999999999999999999999988776552 246554 8999999999999999 7999999999998654 233
Q ss_pred EecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh-hccccc--cccceeEEEECCCCCeeE
Q 021399 229 YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE-IGGVKG--HFGPINALAFNPDGKRYG 304 (313)
Q Consensus 229 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--h~~~V~~~~fspdgk~~~ 304 (313)
+.+...+.+++|+|++..++++++.|+ .+ ++||..+++. +..+.. |.++|.+++|+||++.++
T Consensus 264 ~~~~~~v~~~~~s~~~~~l~~~g~~dg-~i------------~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~ 329 (402)
T 2aq5_A 264 LDTSSGVLLPFFDPDTNIVYLCGKGDS-SI------------RYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEV 329 (402)
T ss_dssp CCCCSSCEEEEEETTTTEEEEEETTCS-CE------------EEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCG
T ss_pred ccCCCceeEEEEcCCCCEEEEEEcCCC-eE------------EEEEecCCCcceEeecccccCCcccceEEecccccce
Confidence 335567899999999999887765443 33 3444443332 222333 569999999999998754
No 53
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.5e-32 Score=232.75 Aligned_cols=237 Identities=24% Similarity=0.440 Sum_probs=191.1
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|+++++++|+.|++|++||+++
T Consensus 59 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 138 (312)
T 4ery_A 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred hhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEe-cCCCCceEEEEEccCCCE
Q 021399 84 GAQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ 160 (313)
++.+..+. +..++..+.|.+++..++. ..+. .+.++++. .+..+..+ ..+...+..+.|+|++++
T Consensus 139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~~wd~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (312)
T 4ery_A 139 GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG------LCRIWDTA------SGQCLKTLIDDDNPPVSFVKFSPNGKY 206 (312)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTS------CEEEEETT------TCCEEEEECCSSCCCEEEEEECTTSSE
T ss_pred CEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCC------cEEEEECC------CCceeeEEeccCCCceEEEEECCCCCE
Confidence 88877665 4567888999987655444 3333 23333321 12233333 345667899999999999
Q ss_pred EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEE
Q 021399 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVT 239 (313)
Q Consensus 161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~ 239 (313)
+++++.|+.|++||+.+++.+..+.........+......+++.+|++|+.||.|++||+++++++..+. +...+.+++
T Consensus 207 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~ 286 (312)
T 4ery_A 207 ILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTA 286 (312)
T ss_dssp EEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEe
Confidence 9999999999999999988776654322112223334455788999999999999999999999998886 466799999
Q ss_pred eccCCCEEEEccc
Q 021399 240 MSPLLDHVVLGGG 252 (313)
Q Consensus 240 ~~p~~~~~~~~~~ 252 (313)
|+|.+..+++++.
T Consensus 287 ~~p~~~~l~s~~~ 299 (312)
T 4ery_A 287 CHPTENIIASAAL 299 (312)
T ss_dssp ECSSSSEEEEEEC
T ss_pred ecCcCCceEEEEc
Confidence 9999998887654
No 54
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.1e-33 Score=240.05 Aligned_cols=259 Identities=15% Similarity=0.262 Sum_probs=199.4
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC----cEEEEecCCCCceEEEEECC--CCCeEEEeeCCCcEE
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSR--DSMTLITGSADQTAK 77 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~----~~~~~~~~H~~~V~~~~~~~--~~~~l~s~s~D~~v~ 77 (313)
..+.+|.+.|.+++|+|++++|++|+.|+.|++||+.++ +....+.+|.+.|.+++|+| ++++|++++.|++|+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 467899999999999999999999999999999999876 46778899999999999999 589999999999999
Q ss_pred EEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (313)
Q Consensus 78 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (313)
+||+++++... .......+..+.+|.+.|.++.|+|+
T Consensus 85 vwd~~~~~~~~-------------------------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~ 121 (351)
T 3f3f_A 85 LWEEDPDQEEC-------------------------------------------SGRRWNKLCTLNDSKGSLYSVKFAPA 121 (351)
T ss_dssp EEEECTTSCTT-------------------------------------------SSCSEEEEEEECCCSSCEEEEEECCG
T ss_pred EEecCCCcccc-------------------------------------------cccCcceeeeecccCCceeEEEEcCC
Confidence 99987653200 00001234455678889999999999
Q ss_pred --CCEEEEeeCCCeEEEEECCCCceeeecc----------cccCceeceEEEEECCC---CCEEEEeeCCCcEEEEECCC
Q 021399 158 --NRTIISAGEDAIVRIWDTETGKLLKESD----------KETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLWDART 222 (313)
Q Consensus 158 --~~~i~t~~~d~~i~lwd~~~~~~~~~~~----------~~~~h~~~v~~~~~s~~---~~~l~s~s~dg~i~iwd~~~ 222 (313)
+.++++++.|+.|++||+.+++.+..+. ....|...+.+++|+|+ +..+++++.|+.+.+|+...
T Consensus 122 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~ 201 (351)
T 3f3f_A 122 HLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD 201 (351)
T ss_dssp GGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT
T ss_pred CCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC
Confidence 9999999999999999998776543221 11257788999999997 99999999999998888887
Q ss_pred CcE--EEEEe-cCCceeEEEeccCCC---EEEEcccccCceeEeeccCCCce----------------------------
Q 021399 223 LEL--IKTYV-TERPVNAVTMSPLLD---HVVLGGGQDASAVTTTDHRAGKF---------------------------- 268 (313)
Q Consensus 223 ~~~--~~~~~-~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 268 (313)
++. +..+. +...+.+++|+|++. .++++++.| +.+.+||.+.+..
T Consensus 202 ~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (351)
T 3f3f_A 202 GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKD-GRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRS 280 (351)
T ss_dssp SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETT-SCEEEEEEEECC-----------------------------
T ss_pred CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCC-CeEEEEeCCCCcCccccCCcccceeccCCCccccccccccc
Confidence 765 44443 456899999999983 445554444 4466666543211
Q ss_pred ------eeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 269 ------EAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 269 ------~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
...+|+....+.+..+.+|.++|++++|+|||+.++..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 324 (351)
T 3f3f_A 281 DSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA 324 (351)
T ss_dssp ----------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred ccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence 11223333345666788999999999999999988764
No 55
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=243.32 Aligned_cols=284 Identities=16% Similarity=0.171 Sum_probs=203.9
Q ss_pred cccccccceeEEEEccCCCEEE-EeeC---CCCeEEEeCCCCcEEEEe-cCCCCceEEEEECCC---CCeEEEeeCCCcE
Q 021399 5 LMKGHERPLTYLKYNKDGDLLF-SCAK---DHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRD---SMTLITGSADQTA 76 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~-s~s~---d~~i~iw~~~~~~~~~~~-~~H~~~V~~~~~~~~---~~~l~s~s~D~~v 76 (313)
++++|...|.+++|+|+++.++ +|+. |+.|+|||+.+++..... .+|...|.+++|+|+ ++++++|+.|+.|
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 92 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL 92 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence 5678999999999999997555 5555 999999999998865443 379999999999998 6999999999999
Q ss_pred EEEECCCCe-EEEEec-CCCCeeEEEe------ecCCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399 77 KLWNVETGA-QLFTFN-FDSPARSVDF------AVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (313)
Q Consensus 77 ~vWd~~~~~-~~~~~~-~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (313)
++||+.+++ .+..+. +...+..+.+ ++++. ++.+..+.. +.++++.. ....+..+..+.+
T Consensus 93 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~------i~vwd~~~-----~~~~~~~~~~~~~ 161 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT------VKVWDPRQ-----KDDPVANMEPVQG 161 (357)
T ss_dssp EEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC------EEEECTTS-----CSSCSEEECCCTT
T ss_pred EEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe------EEEEeCCC-----CCCcceeccccCC
Confidence 999999876 555443 4567777755 34444 444333332 23333221 1112334433333
Q ss_pred ----ceEEEE----EccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC---CCCEEEEeeCCCcEE
Q 021399 148 ----RINRAV----WGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA---DGSHFLTGSLDKSAK 216 (313)
Q Consensus 148 ----~i~~~~----~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~---~~~~l~s~s~dg~i~ 216 (313)
.+.++. |+|+++++++++.|+.|++||+++++.... ..|...+.+++|+| ++.++++++.||.|+
T Consensus 162 ~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 162 ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE----TNIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE----EECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee----cCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 677777 788999999999999999999998876443 24778999999999 999999999999999
Q ss_pred EEECCCCcEEEEE------ecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeeh--------hhhhhhc
Q 021399 217 LWDARTLELIKTY------VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK--------ILQEEIG 282 (313)
Q Consensus 217 iwd~~~~~~~~~~------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~ 282 (313)
+||+++++++..+ .+...+.+++|+|++..++++++.+ +.+.+||.+.+...... +. .+.+.+.
T Consensus 238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 315 (357)
T 3i2n_A 238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGA-GGLHLWKYEYPIQRSKK-DSEGIEMGVAGSVSLLQ 315 (357)
T ss_dssp EEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETT-SEEEEEEEECCSCC--C-CTTSCCCCCCCEEEEEE
T ss_pred EEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCC-CcEEEeecCCCcccccc-cCCCCccccccccceee
Confidence 9999886654433 2566899999999988556555544 34556665432211100 00 0113345
Q ss_pred cccccccceeEEEECCCCCeeEE
Q 021399 283 GVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 283 ~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
.+.+|.++|++++|+|||+.+++
T Consensus 316 ~~~~~~~~v~~~~~s~~~~~l~~ 338 (357)
T 3i2n_A 316 NVTLSTQPISSLDWSPDKRGLCV 338 (357)
T ss_dssp EEECCSSCEEEEEECSSSTTEEE
T ss_pred ccccCCCCeeEEEEcCCCCeEEE
Confidence 67789999999999999999875
No 56
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-33 Score=242.05 Aligned_cols=277 Identities=14% Similarity=0.079 Sum_probs=212.0
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc---EEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEE
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWN 80 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~---~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd 80 (313)
+..+|.+.|.+++|+|++++|++++.|+.|++|++.+++ ....+.+|...|.+++|+|+++ ++++|+.||.|++||
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 457899999999999999999999999999999998877 3456679999999999999999 999999999999999
Q ss_pred C-CCCeEEEEec--CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCC---CCceEEEecCCCCceEEEEE
Q 021399 81 V-ETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ---GGESVLILKGPQGRINRAVW 154 (313)
Q Consensus 81 ~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~ 154 (313)
+ .+++...... +...+..+.|.++..++....+.... ++++....... ....+..+. |...+.++.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~------iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~ 158 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIE------VIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDT 158 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEE------EECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEE
T ss_pred eccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEE------EEcccccccccccccCCeeeEEe-eCCceEEEEe
Confidence 9 8887755555 66788899999855555555544332 33222100000 000111122 6778999999
Q ss_pred ccCCCEEEEeeCCCeEEEEECCC-CceeeecccccCceeceEEEEECC-CCCEEEEeeCCCcEEEEECCCC------cEE
Q 021399 155 GPLNRTIISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTL------ELI 226 (313)
Q Consensus 155 ~~~~~~i~t~~~d~~i~lwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd~~~~------~~~ 226 (313)
+|++ +++++.|+.|++||+.+ +...... ....|...+.+++|+| +++++++++.||.|++||++.. ++.
T Consensus 159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGTI-EESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp CSSE--EEEEESTTEEEEEESSCCTTCCCEE-EECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred cCCc--EEEEeCCCeEEEEECCcccccccee-eecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence 9876 99999999999999987 4432111 1235778999999999 9999999999999999999876 666
Q ss_pred EEEecC-C---------ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccc-ccceeEEE
Q 021399 227 KTYVTE-R---------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINALA 295 (313)
Q Consensus 227 ~~~~~~-~---------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~ 295 (313)
..+... . .+.+++|+|++..+++++. ++ .+++||..+++.+..+.+| .++|++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg-------------~i~vwd~~~~~~~~~~~~~h~~~v~~~~ 301 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-DG-------------IISCWNLQTRKKIKNFAKFNEDSVVKIA 301 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-TS-------------CEEEEETTTTEEEEECCCCSSSEEEEEE
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecC-Cc-------------eEEEEcCccHhHhhhhhcccCCCceEec
Confidence 666432 2 7999999999988776543 22 3466777777777778888 99999999
Q ss_pred ECCCCCeeEEEE
Q 021399 296 FNPDGKRYGFLL 307 (313)
Q Consensus 296 fspdgk~~~~~~ 307 (313)
|||+.++...
T Consensus 302 --~~~~~l~s~s 311 (342)
T 1yfq_A 302 --CSDNILCLAT 311 (342)
T ss_dssp --ECSSEEEEEE
T ss_pred --CCCCeEEEEe
Confidence 9999988754
No 57
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.9e-33 Score=244.02 Aligned_cols=269 Identities=15% Similarity=0.202 Sum_probs=204.2
Q ss_pred cccccceeEEEEccCCC-EEEEeeCCCCeEEEeC----CCCc------EEEEecC----------CCCceEEEEECCCCC
Q 021399 7 KGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFA----DNGE------RLGTYRG----------HNGAVWCCDVSRDSM 65 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~----~~~~------~~~~~~~----------H~~~V~~~~~~~~~~ 65 (313)
..|.++|.+++|+|+|+ +|++|+.|+.|++|++ .+++ ....+.. |.+.|.+++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34558999999999999 9999999999999999 8887 4555544 788999999999999
Q ss_pred eEEEeeCCCcEEEEECCCCeEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEec
Q 021399 66 TLITGSADQTAKLWNVETGAQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILK 143 (313)
Q Consensus 66 ~l~s~s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (313)
+|++++.|+.|++|| .+++.+..+. +..++..+.|.+++..++. ..+.. +.++++. .+..+..+.
T Consensus 122 ~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~------i~iwd~~------~~~~~~~~~ 188 (425)
T 1r5m_A 122 SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENV------TILWNVI------SGTVMQHFE 188 (425)
T ss_dssp EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCC------EEEEETT------TTEEEEEEC
T ss_pred EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCe------EEEEECC------CCcEEEEee
Confidence 999999999999999 4555555554 5678899999987665444 33332 2223221 123344444
Q ss_pred CCCCc---------------eEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEE
Q 021399 144 GPQGR---------------INRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT 208 (313)
Q Consensus 144 ~~~~~---------------i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 208 (313)
.+... +..+.|+|++ .+++++.|+.|++||+.+++.+..+. +|...|.+++|+|++.+|++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 189 LKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI---GHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp CC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC---CCSSCEEEEEEETTTTEEEE
T ss_pred ccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec---cCCCceEEEEECCCCCEEEE
Confidence 44443 8888899874 58899999999999999887665543 58889999999999999999
Q ss_pred eeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccc
Q 021399 209 GSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH 287 (313)
Q Consensus 209 ~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 287 (313)
++.|+.|++||+++++++..+. +...+.+++|+|++ .+++ ++.++ .+++||..+++.+..+..|
T Consensus 265 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~-~~~d~-------------~i~i~d~~~~~~~~~~~~~ 329 (425)
T 1r5m_A 265 ASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVIS-CSMDG-------------SVRLWSLKQNTLLALSIVD 329 (425)
T ss_dssp EETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEE-EETTS-------------EEEEEETTTTEEEEEEECT
T ss_pred EcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEE-EeCCC-------------cEEEEECCCCcEeEecccC
Confidence 9999999999999998887775 56789999999988 4444 33332 3456666666666677789
Q ss_pred ccceeEEEECCCCCeeEEEE
Q 021399 288 FGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 288 ~~~V~~~~fspdgk~~~~~~ 307 (313)
..+|++++|+|+|+.++...
T Consensus 330 ~~~i~~~~~s~~~~~l~~~~ 349 (425)
T 1r5m_A 330 GVPIFAGRISQDGQKYAVAF 349 (425)
T ss_dssp TCCEEEEEECTTSSEEEEEE
T ss_pred CccEEEEEEcCCCCEEEEEE
Confidence 99999999999999887643
No 58
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.1e-32 Score=235.13 Aligned_cols=234 Identities=18% Similarity=0.249 Sum_probs=192.5
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC------cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG------ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~------~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~v 78 (313)
.+..|...|.+++|+|+|++|++|+.|+.+++|++... .....+.+|.+.|.+++|+|+++.+++++.|++|++
T Consensus 101 ~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~l 180 (354)
T 2pbi_B 101 AVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCAL 180 (354)
T ss_dssp EEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEE
T ss_pred EEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEE
Confidence 45678889999999999999999999999999998643 345678899999999999999999999999999999
Q ss_pred EECCCCeEEEEec-CCCCeeEEEeecC---CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE
Q 021399 79 WNVETGAQLFTFN-FDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (313)
Q Consensus 79 Wd~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (313)
||+++++.+..+. +...+..+.+.+. ..++.+..+.. +.+|++. .+..+..+.+|...|.+++|
T Consensus 181 wd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~------v~~wd~~------~~~~~~~~~~h~~~v~~v~~ 248 (354)
T 2pbi_B 181 WDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKK------AMVWDMR------SGQCVQAFETHESDVNSVRY 248 (354)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSC------EEEEETT------TCCEEEEECCCSSCEEEEEE
T ss_pred EeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCe------EEEEECC------CCcEEEEecCCCCCeEEEEE
Confidence 9999998887765 4567778888763 34555544433 3334332 24566778899999999999
Q ss_pred ccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCC
Q 021399 155 GPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TER 233 (313)
Q Consensus 155 ~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~ 233 (313)
+|+++.|++|+.|++|++||++..+.+..... ..+...+.+++|+|++.+|++|+.|++|++||+.+++++..+. +..
T Consensus 249 ~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~ 327 (354)
T 2pbi_B 249 YPSGDAFASGSDDATCRLYDLRADREVAIYSK-ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN 327 (354)
T ss_dssp CTTSSEEEEEETTSCEEEEETTTTEEEEEECC-TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS
T ss_pred eCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC
Confidence 99999999999999999999988766554332 2344578999999999999999999999999999999888775 567
Q ss_pred ceeEEEeccCCCEEEEcc
Q 021399 234 PVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 234 ~~~~~~~~p~~~~~~~~~ 251 (313)
.+.+++|+|++..+++++
T Consensus 328 ~v~~l~~spdg~~l~sgs 345 (354)
T 2pbi_B 328 RVSTLRVSPDGTAFCSGS 345 (354)
T ss_dssp CEEEEEECTTSSCEEEEE
T ss_pred cEEEEEECCCCCEEEEEc
Confidence 899999999999877654
No 59
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.1e-33 Score=242.20 Aligned_cols=275 Identities=16% Similarity=0.254 Sum_probs=208.3
Q ss_pred ccccccccceeEEEEccC----CCEEEEeeCCCCeEEEeCCCCcEEEEecC-----CCCceEEEEECCC----CCeEEEe
Q 021399 4 ILMKGHERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGERLGTYRG-----HNGAVWCCDVSRD----SMTLITG 70 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~----g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-----H~~~V~~~~~~~~----~~~l~s~ 70 (313)
.++.+|.++|.+++|+|+ ...+++++.++.|++||..+++.+..+.. |...|.+++|+|+ +++|++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 355689999999999984 45677777778999999998877666653 6678999999998 6699999
Q ss_pred eCCCcEEEEECCCCeEEEEec-CCCCeeEEEeec-CCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEe---cC
Q 021399 71 SADQTAKLWNVETGAQLFTFN-FDSPARSVDFAV-GDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLIL---KG 144 (313)
Q Consensus 71 s~D~~v~vWd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 144 (313)
+.||+|++||+.+++.+..+. +..++..+.|.+ +...++. ..+. .+.++++. .++.+..+ .+
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg------~i~iwd~~------~~~~~~~~~~~~~ 159 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDH------ALRLWNIQ------TDTLVAIFGGVEG 159 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTS------CEEEEETT------TTEEEEEECSTTS
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCC------eEEEEEee------cCeEEEEeccccc
Confidence 999999999999998887775 677899999998 5554444 3333 23334331 23445555 67
Q ss_pred CCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecc-------------------------cccCceeceEEEEE
Q 021399 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD-------------------------KETGHKKTITSLAK 199 (313)
Q Consensus 145 ~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~-------------------------~~~~h~~~v~~~~~ 199 (313)
|...|.++.|+|+++++++++.|+.|++||+.+++....+. ...+|...|.+++|
T Consensus 160 ~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 239 (366)
T 3k26_A 160 HRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRW 239 (366)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEE
T ss_pred ccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEE
Confidence 89999999999999999999999999999998765443221 11238889999999
Q ss_pred CCCCCEEEEeeCCCcEEEEECCCCcE--------------EEEEe-cCCceeEEEeccC--CCEEEEcccccCceeEeec
Q 021399 200 AADGSHFLTGSLDKSAKLWDARTLEL--------------IKTYV-TERPVNAVTMSPL--LDHVVLGGGQDASAVTTTD 262 (313)
Q Consensus 200 s~~~~~l~s~s~dg~i~iwd~~~~~~--------------~~~~~-~~~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~ 262 (313)
+ ++++++++.|+.|++||+++++. +..+. +...+.+++|+|+ +..+++++ .+ +.+.+
T Consensus 240 ~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~-~d-g~i~v-- 313 (366)
T 3k26_A 240 L--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN-QV-GKLYV-- 313 (366)
T ss_dssp E--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC-TT-SCEEE--
T ss_pred c--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe-cC-CcEEE--
Confidence 8 77999999999999999988643 45544 3557899999999 77766653 23 33444
Q ss_pred cCCCceeeeeeehhhhhhh----cccccc--ccceeEEEECCCCCeeEEE
Q 021399 263 HRAGKFEAKFFDKILQEEI----GGVKGH--FGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~----~~~~~h--~~~V~~~~fspdgk~~~~~ 306 (313)
||..+++.. ..+.+| ..+|++++|+|||+.++..
T Consensus 314 ----------wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~ 353 (366)
T 3k26_A 314 ----------WDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAV 353 (366)
T ss_dssp ----------EECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEE
T ss_pred ----------EECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEE
Confidence 444333222 245666 7999999999999998765
No 60
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1e-31 Score=239.86 Aligned_cols=265 Identities=23% Similarity=0.377 Sum_probs=207.9
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEEC--CCCCeEEEeeCCCcEEEEECC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS--RDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~--~~~~~l~s~s~D~~v~vWd~~ 82 (313)
.+.+|.+.|.+++|+|++ +|++|+.|+.|++||+.+++.+..+.+|.+.|.+++|+ ++++.+++|+.|++|++||+.
T Consensus 157 ~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 157 QLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp EECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred EEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence 577999999999999988 99999999999999999999999999999999999998 577899999999999999998
Q ss_pred CCeEEEE-----------------------e-cCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCc
Q 021399 83 TGAQLFT-----------------------F-NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 137 (313)
Q Consensus 83 ~~~~~~~-----------------------~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (313)
++..... . .+...+..+ .+ +..++.+..+. .+.++++ ..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~------~i~vwd~------~~~~ 301 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDN------TLIVWDV------AQMK 301 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTS------CEEEEET------TTTE
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCC------eEEEEEC------CCCc
Confidence 7653211 1 111222222 22 23333333332 2333333 2345
Q ss_pred eEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEE
Q 021399 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217 (313)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~i 217 (313)
.+..+.+|...|.++.|+|+++.+++|+.|+.|++||+.+++++..+. +|...|.+++++ +++|++++.||.|++
T Consensus 302 ~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~---~h~~~v~~~~~~--~~~l~s~s~dg~v~v 376 (464)
T 3v7d_B 302 CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ---GHTALVGLLRLS--DKFLVSAAADGSIRG 376 (464)
T ss_dssp EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEEC--SSEEEEEETTSEEEE
T ss_pred EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe---CCCCcEEEEEEc--CCEEEEEeCCCcEEE
Confidence 677788999999999999999999999999999999999998877654 688999999997 579999999999999
Q ss_pred EECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcc-ccccccceeEEEE
Q 021399 218 WDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG-VKGHFGPINALAF 296 (313)
Q Consensus 218 wd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~~~f 296 (313)
||+++++..........+..++|+|++..+++++ + +. +++||..+++.+.. +.+|.++|++++|
T Consensus 377 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--d-g~------------i~iwd~~~g~~~~~~~~~~~~~v~~v~~ 441 (464)
T 3v7d_B 377 WDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS--E-NQ------------FNIYNLRSGKLVHANILKDADQIWSVNF 441 (464)
T ss_dssp EETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE--T-TE------------EEEEETTTCCEEESCTTTTCSEEEEEEE
T ss_pred EECCCCceeeeecCCCCccEEEEEeCCCEEEEec--C-Ce------------EEEEECCCCcEEehhhccCCCcEEEEEe
Confidence 9999998888777777888999999988766653 2 22 45666666666554 5678999999999
Q ss_pred CCCCCeeEEE
Q 021399 297 NPDGKRYGFL 306 (313)
Q Consensus 297 spdgk~~~~~ 306 (313)
+ ++.++..
T Consensus 442 ~--~~~l~~~ 449 (464)
T 3v7d_B 442 K--GKTLVAA 449 (464)
T ss_dssp E--TTEEEEE
T ss_pred c--CCEEEEE
Confidence 7 4554443
No 61
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.5e-32 Score=236.85 Aligned_cols=272 Identities=18% Similarity=0.287 Sum_probs=204.4
Q ss_pred cccccccceeEEEEccC---CCEEEEeeCCCCeEEEeCCC-CcEE-EEecCCCCceEEEEECCCCCeEEEeeCCCcEEEE
Q 021399 5 LMKGHERPLTYLKYNKD---GDLLFSCAKDHTPTVWFADN-GERL-GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLW 79 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~---g~~l~s~s~d~~i~iw~~~~-~~~~-~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vW 79 (313)
++.+|.+.|.+++|+|+ |++|++|+.|+.|+|||+.+ +..+ ..+.+|.+.|.+++|+|++++|++++.|++|++|
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iw 113 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEE
Confidence 67899999999999999 69999999999999999997 5554 7889999999999999999999999999999999
Q ss_pred ECCCCeEEEEecCCCCeeEEEe--ecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 80 NVETGAQLFTFNFDSPARSVDF--AVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
|+++++.+....+..++..+.| .+++..++. ..+.. +.++++.. +..+..+..+. .+..+.+.
T Consensus 114 d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~------i~vwd~~~------~~~~~~~~~~~-~~~~~~~~- 179 (368)
T 3mmy_A 114 DLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKT------LKFWDTRS------SNPMMVLQLPE-RCYCADVI- 179 (368)
T ss_dssp ETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSE------EEEECSSC------SSCSEEEECSS-CEEEEEEE-
T ss_pred EcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCc------EEEEECCC------CcEEEEEecCC-CceEEEec-
Confidence 9999998887778888999999 666654444 33332 33333321 22333344333 44444444
Q ss_pred CCCEEEEeeCCCeEEEEECCCCcee-eecccccCceeceEEEEECCCCCE----EEEeeCCCcEEEEECCCC---cEEEE
Q 021399 157 LNRTIISAGEDAIVRIWDTETGKLL-KESDKETGHKKTITSLAKAADGSH----FLTGSLDKSAKLWDARTL---ELIKT 228 (313)
Q Consensus 157 ~~~~i~t~~~d~~i~lwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~----l~s~s~dg~i~iwd~~~~---~~~~~ 228 (313)
...+++++.++.+++||+...... ...... +...+.++++.++... +++++.||.|++||++.. ..+..
T Consensus 180 -~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~ 256 (368)
T 3mmy_A 180 -YPMAVVATAERGLIVYQLENQPSEFRRIESP--LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFT 256 (368)
T ss_dssp -TTEEEEEEGGGCEEEEECSSSCEEEEECCCS--CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEE
T ss_pred -CCeeEEEeCCCcEEEEEeccccchhhhcccc--ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcccccee
Confidence 457888999999999999765432 222222 3334455544444433 999999999999999987 44445
Q ss_pred EecCC-------------ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEE
Q 021399 229 YVTER-------------PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 295 (313)
Q Consensus 229 ~~~~~-------------~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 295 (313)
+.... .+.+++|+|++..+++++. |+ .+++||..+++.+..+.+|..+|++++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg-------------~i~iwd~~~~~~~~~~~~~~~~v~~~~ 322 (368)
T 3mmy_A 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS-DG-------------RFSFWDKDARTKLKTSEQLDQPISACC 322 (368)
T ss_dssp EECSEEC----CCCEEECCEEEEEECTTTCCEEEEET-TS-------------CEEEEETTTTEEEEECCCCSSCEEEEE
T ss_pred eeeeecccccccccccccceEEEEEecCCCEEEEEcc-CC-------------eEEEEECCCCcEEEEecCCCCCceEEE
Confidence 44322 5999999999988776543 32 356777777777788889999999999
Q ss_pred ECCCCCeeEEEE
Q 021399 296 FNPDGKRYGFLL 307 (313)
Q Consensus 296 fspdgk~~~~~~ 307 (313)
|+|||+.++..-
T Consensus 323 ~s~~g~~l~~~s 334 (368)
T 3mmy_A 323 FNHNGNIFAYAS 334 (368)
T ss_dssp ECTTSSCEEEEE
T ss_pred ECCCCCeEEEEe
Confidence 999999988764
No 62
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=7e-33 Score=236.31 Aligned_cols=269 Identities=16% Similarity=0.196 Sum_probs=210.7
Q ss_pred cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE-
Q 021399 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL- 87 (313)
Q Consensus 9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~- 87 (313)
|.++|.+++|+|||++++.+..++.+.+|............+|.+.|.+++|+|+++++++++ |+.|++||+.+++..
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~ 86 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS 86 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence 567899999999999999998888887776655555555568999999999999999999998 999999999875422
Q ss_pred --EEe---cCCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 88 --FTF---NFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 88 --~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
... .....+..+.|.+++..++.. .+. .+.++++.. ........+..|...+..+.|+|+++++
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~------~i~~~d~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l 156 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS------TLSIWDLAA----PTPRIKAELTSSAPACYALAISPDSKVC 156 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTSSEEEEEESSS------EEEEEECCC----C--EEEEEEECSSSCEEEEEECTTSSEE
T ss_pred eeecccccCCCCcEEEEEEcCCCCEEEEEcCCC------cEEEEECCC----CCcceeeecccCCCceEEEEECCCCCEE
Confidence 221 345678889999877655443 332 233333321 1122455677888999999999999999
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEec
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS 241 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 241 (313)
++++.|+.|++||+++++.+..+. .|...+.+++|+|++++|++++.|+.|++||+++++++..+.....+.+++|+
T Consensus 157 ~~~~~dg~v~~~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s 233 (337)
T 1gxr_A 157 FSCCSDGNIAVWDLHNQTLVRQFQ---GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYC 233 (337)
T ss_dssp EEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEC
T ss_pred EEEeCCCcEEEEeCCCCceeeeee---cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEEC
Confidence 999999999999999888776553 58889999999999999999999999999999999999888888889999999
Q ss_pred cCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 242 PLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
|++..+++++.+ ..+. +||....+. ..+..|..+|.+++|+|||++++..
T Consensus 234 ~~~~~l~~~~~~--~~i~------------~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~ 283 (337)
T 1gxr_A 234 PTGEWLAVGMES--SNVE------------VLHVNKPDK-YQLHLHESCVLSLKFAYCGKWFVST 283 (337)
T ss_dssp TTSSEEEEEETT--SCEE------------EEETTSSCE-EEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCEEEEEcCC--CcEE------------EEECCCCCe-EEEcCCccceeEEEECCCCCEEEEe
Confidence 999988766432 2343 444433222 2456799999999999999987754
No 63
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-32 Score=233.38 Aligned_cols=234 Identities=18% Similarity=0.271 Sum_probs=171.3
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC-------CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-------GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~-------~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd 80 (313)
+|.+.|.+++|+|++++|++|+.|+.|+|||... .+.+..+.+|.+.|.+++|+|++++|+||+.|++|++||
T Consensus 56 ~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd 135 (330)
T 2hes_X 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWE 135 (330)
T ss_dssp CCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence 3999999999999999999999999999999853 356778999999999999999999999999999999999
Q ss_pred CCCC----eEEEEec-CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE
Q 021399 81 VETG----AQLFTFN-FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (313)
Q Consensus 81 ~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (313)
+... +++..+. +...+..+.|+|++..++. +.+. .+++|+.... ....+..+.+|.+.|.++.|
T Consensus 136 ~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~------~i~iW~~~~~----~~~~~~~~~~h~~~v~~~~~ 205 (330)
T 2hes_X 136 TDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD------TVRIWKDYDD----DWECVAVLNGHEGTVWSSDF 205 (330)
T ss_dssp CCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS------CEEEEEEETT----EEEEEEEECCCSSCEEEEEE
T ss_pred ccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC------eEEEEECCCC----CeeEEEEccCCCCcEEEEEe
Confidence 9432 3444443 4567889999987655544 3333 3344443211 12356678899999999999
Q ss_pred ccC--CCEEEEeeCCCeEEEEECCCC--------ceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Q 021399 155 GPL--NRTIISAGEDAIVRIWDTETG--------KLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (313)
Q Consensus 155 ~~~--~~~i~t~~~d~~i~lwd~~~~--------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~ 224 (313)
+|+ +..+++|+.|++|++||+..+ .+...+ ...|...|.+++|++++ +|++++.||+|++||.++++
T Consensus 206 ~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~ 282 (330)
T 2hes_X 206 DKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAIL--PDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGE 282 (330)
T ss_dssp CCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEEC--CSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTE
T ss_pred cCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeec--ccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCc
Confidence 998 678999999999999998653 122221 12388899999999765 89999999999999998774
Q ss_pred --EEEEE-e-cCC-ceeEEEeccC--CCEEEEcccccC
Q 021399 225 --LIKTY-V-TER-PVNAVTMSPL--LDHVVLGGGQDA 255 (313)
Q Consensus 225 --~~~~~-~-~~~-~~~~~~~~p~--~~~~~~~~~~~~ 255 (313)
++... . +.. .+.+++|+|. +..+ ++++.|+
T Consensus 283 ~~~~~~~~~~h~~~~v~~v~~~~~~~~~~l-as~s~Dg 319 (330)
T 2hes_X 283 WKVFAKRALCHGVYEINVVKWLELNGKTIL-ATGGDDG 319 (330)
T ss_dssp EEEEEEESCTTTTSCEEEEEEC-----CCE-EEEETTS
T ss_pred eEEEeccccccccceEEEEEEecCCCceEE-EEecCCC
Confidence 33333 2 333 7899999994 4444 4444443
No 64
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.1e-32 Score=248.87 Aligned_cols=285 Identities=14% Similarity=0.125 Sum_probs=204.0
Q ss_pred ccccccccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcEEEEecCCCC---ceEEEEECCC-CCeEEEeeCCCcEEE
Q 021399 4 ILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNG---AVWCCDVSRD-SMTLITGSADQTAKL 78 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~---~V~~~~~~~~-~~~l~s~s~D~~v~v 78 (313)
..+.+|...|.+++|+|+++ +|++++.|+.|++||..+++.+.++.+|.. .|.+++|+|+ ++++++++.|+.|++
T Consensus 154 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 233 (615)
T 1pgu_A 154 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISC 233 (615)
T ss_dssp EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEE
T ss_pred eeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 35778999999999999998 899999999999999999999999999999 9999999999 999999999999999
Q ss_pred EECCCCeEEEEe-----cCCCCeeEEEeecCCeEEEEECCCceeccccc---eeeeeeeCC-------------------
Q 021399 79 WNVETGAQLFTF-----NFDSPARSVDFAVGDKLAVITTDPFMELNSAI---HVKRIARDP------------------- 131 (313)
Q Consensus 79 Wd~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------------------- 131 (313)
||+.+++.+..+ .+..++..+.|..+..++....+....++... ....+....
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 313 (615)
T 1pgu_A 234 FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 313 (615)
T ss_dssp EETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred EECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEE
Confidence 999999988887 55677888888833334444444322211110 000000000
Q ss_pred ---C--------CCCCceEEEecCCCCc---------------------------------eEEEEEccC----------
Q 021399 132 ---A--------DQGGESVLILKGPQGR---------------------------------INRAVWGPL---------- 157 (313)
Q Consensus 132 ---~--------~~~~~~~~~~~~~~~~---------------------------------i~~~~~~~~---------- 157 (313)
. ...+..+..+.+|.+. |.++.| +.
T Consensus 314 ~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d 392 (615)
T 1pgu_A 314 SLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWD 392 (615)
T ss_dssp EEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETT
T ss_pred EEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCC
Confidence 0 0001112222233222 222222 11
Q ss_pred ---------------------------------------------------------------CCEEEEeeC-CCeEEEE
Q 021399 158 ---------------------------------------------------------------NRTIISAGE-DAIVRIW 173 (313)
Q Consensus 158 ---------------------------------------------------------------~~~i~t~~~-d~~i~lw 173 (313)
++++++++. |+.|++|
T Consensus 393 ~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~ 472 (615)
T 1pgu_A 393 DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVF 472 (615)
T ss_dssp TEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEE
T ss_pred CCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEE
Confidence 444555555 6666666
Q ss_pred ECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe--cCCceeEEEecc---------
Q 021399 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTMSP--------- 242 (313)
Q Consensus 174 d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~~p--------- 242 (313)
|+.+++... ....+|...|++++|+|++.+|++++.||.|++||+++++++..+. +...+.+++|+|
T Consensus 473 ~~~~~~~~~--~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~ 550 (615)
T 1pgu_A 473 KLSDLEVSF--DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE 550 (615)
T ss_dssp ETTEEEEEE--ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------C
T ss_pred ECCCccccc--cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccc
Confidence 665544321 2234688899999999999999999999999999999999988875 667899999999
Q ss_pred -CCCEEEEcccccCceeEeeccCCCceeeeeeehhhh-hhhccccccccceeEEEECCCCCeeEEE
Q 021399 243 -LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ-EEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 243 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
++..+++++. |+ .+++||..++ +.+..+.+|.+.|++++|+|||+ ++..
T Consensus 551 ~~~~~l~~~~~-dg-------------~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~ 601 (615)
T 1pgu_A 551 IEEDLVATGSL-DT-------------NIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSS 601 (615)
T ss_dssp CSCCEEEEEET-TS-------------CEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEE
T ss_pred cCCCEEEEEcC-CC-------------cEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEe
Confidence 8877666543 32 2456666554 55667889999999999999999 6543
No 65
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.7e-32 Score=240.26 Aligned_cols=272 Identities=21% Similarity=0.329 Sum_probs=207.5
Q ss_pred ccccccccce-eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 4 ILMKGHERPL-TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 4 ~~l~~h~~~v-~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
..+++|...+ .++.| ++++|++|+.||.|++||+.+++.+.++.+|.+.|++++|+|++ .+++|+.||+|++||++
T Consensus 115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~ 191 (464)
T 3v7d_B 115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK 191 (464)
T ss_dssp EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETT
T ss_pred EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECC
Confidence 3788999986 56655 57899999999999999999999999999999999999999987 89999999999999999
Q ss_pred CCeEEEEec-CCCCeeEEEeec--CCe-EEEEECCCceeccccceeeeeeeCCCC-----------------CCCceEEE
Q 021399 83 TGAQLFTFN-FDSPARSVDFAV--GDK-LAVITTDPFMELNSAIHVKRIARDPAD-----------------QGGESVLI 141 (313)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 141 (313)
+++.+..+. +..++..+.+.+ +.. ++.+..+... .++++...... .....+..
T Consensus 192 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i------~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (464)
T 3v7d_B 192 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTL------HVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 265 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCE------EEEECCCCCCC------CCSSEEESCGGGCTTEEEE
T ss_pred CCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcE------EEeeCCCCcccccccccCCcceEeeccCCCeEEEEE
Confidence 998887775 567888888874 434 4444444332 23332211100 01113556
Q ss_pred ecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399 142 LKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (313)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~ 221 (313)
+.+|...+..+ +++++++++++.|+.|++||+.+++++..+. +|...|.+++|+|+++++++|+.||.|++||++
T Consensus 266 ~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~ 340 (464)
T 3v7d_B 266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS---GHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340 (464)
T ss_dssp ECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC---CCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred ccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec---CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence 77888888766 6778899999999999999999988776653 688999999999999999999999999999999
Q ss_pred CCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCC
Q 021399 222 TLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300 (313)
Q Consensus 222 ~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg 300 (313)
+++++.++. +...+.++++++ ..+++ ++.|+ .+. +||..+....... .|...+..++|+|++
T Consensus 341 ~~~~~~~~~~h~~~v~~~~~~~--~~l~s-~s~dg-~v~------------vwd~~~~~~~~~~-~~~~~~~~~~~~~~~ 403 (464)
T 3v7d_B 341 NGELMYTLQGHTALVGLLRLSD--KFLVS-AAADG-SIR------------GWDANDYSRKFSY-HHTNLSAITTFYVSD 403 (464)
T ss_dssp TTEEEEEECCCSSCEEEEEECS--SEEEE-EETTS-EEE------------EEETTTCCEEEEE-ECTTCCCEEEEEECS
T ss_pred CCcEEEEEeCCCCcEEEEEEcC--CEEEE-EeCCC-cEE------------EEECCCCceeeee-cCCCCccEEEEEeCC
Confidence 999998885 466789999874 45444 34332 344 4444333322222 366788889999999
Q ss_pred CeeEEE
Q 021399 301 KRYGFL 306 (313)
Q Consensus 301 k~~~~~ 306 (313)
+.++..
T Consensus 404 ~~l~~~ 409 (464)
T 3v7d_B 404 NILVSG 409 (464)
T ss_dssp SEEEEE
T ss_pred CEEEEe
Confidence 987653
No 66
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.1e-32 Score=240.96 Aligned_cols=276 Identities=12% Similarity=0.146 Sum_probs=201.0
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
.+..| ..+....|+|++++|++|+.|+.|++||+.+++....+.+|.+.|.+++|+|++++|++|+.|++|++||+.++
T Consensus 93 ~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~ 171 (420)
T 3vl1_A 93 MLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG 171 (420)
T ss_dssp TSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred EEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC
Confidence 44555 44556688999999999999999999999999999888999999999999999999999999999999999988
Q ss_pred eEEEEec-CCCCeeEEEeecCCeEE-EEECCCceeccccceeeeeeeCCCCCCCceEEEecC------------------
Q 021399 85 AQLFTFN-FDSPARSVDFAVGDKLA-VITTDPFMELNSAIHVKRIARDPADQGGESVLILKG------------------ 144 (313)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 144 (313)
+.+..+. +...+..+.|++++..+ .+..+....+ |++. .+..+..+..
T Consensus 172 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i------wd~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 239 (420)
T 3vl1_A 172 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRL------WECG------TGTTIHTFNRKENPHDGVNSIALFVGTD 239 (420)
T ss_dssp CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEE------EETT------TTEEEEEECBTTBTTCCEEEEEEEECCC
T ss_pred cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEE------eECC------CCceeEEeecCCCCCCCccEEEEecCCc
Confidence 7766654 56788999999866544 4444443322 2211 1122222221
Q ss_pred ------CCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEE
Q 021399 145 ------PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKL 217 (313)
Q Consensus 145 ------~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~i 217 (313)
+...+..+.|+|+++++++++.|+.|++||+.+++.+..+. ..|...+.+++|+|++. +|++|+.||.|++
T Consensus 240 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~v 317 (420)
T 3vl1_A 240 RQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP--SKFTCSCNSLTVDGNNANYIYAGYENGMLAQ 317 (420)
T ss_dssp SSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC--CTTSSCEEEEEECSSCTTEEEEEETTSEEEE
T ss_pred ceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc--cccCCCceeEEEeCCCCCEEEEEeCCCeEEE
Confidence 23455566678999999999999999999999887766543 35888999999999999 9999999999999
Q ss_pred EECCCCcE-EEEEe--cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEE
Q 021399 218 WDARTLEL-IKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 294 (313)
Q Consensus 218 wd~~~~~~-~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 294 (313)
||+++++. +..+. +...+.++.+ |.+..++ +++.| +.+.+|+.........+.. ......+.+|.+.|.++
T Consensus 318 wd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~-s~~~d-~~v~iw~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~ 391 (420)
T 3vl1_A 318 WDLRSPECPVGEFLINEGTPINNVYF-AAGALFV-SSGFD-TSIKLDIISDPESERPAIE---FETPTFLVSNDDAVSQF 391 (420)
T ss_dssp EETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEE-EETTT-EEEEEEEECCTTCCSCEEC---TTSCEEECCSSCCCCEE
T ss_pred EEcCCCcCchhhhhccCCCCceEEEe-CCCCEEE-EecCC-ccEEEEeccCCCCCcccee---ccCccEEccCCcceEEE
Confidence 99998753 55554 4556777765 4555444 44433 3445555433211111100 11112355789999999
Q ss_pred EECCCCC
Q 021399 295 AFNPDGK 301 (313)
Q Consensus 295 ~fspdgk 301 (313)
+|+||++
T Consensus 392 ~~s~~~~ 398 (420)
T 3vl1_A 392 CYVSDDE 398 (420)
T ss_dssp EEECCSS
T ss_pred EEccCCC
Confidence 9999999
No 67
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=254.99 Aligned_cols=281 Identities=13% Similarity=0.105 Sum_probs=192.8
Q ss_pred cccceeEEEEccCC---------CEEEE-------------------eeCCCCeEEEeCCCCcE----EEEecCCCCceE
Q 021399 9 HERPLTYLKYNKDG---------DLLFS-------------------CAKDHTPTVWFADNGER----LGTYRGHNGAVW 56 (313)
Q Consensus 9 h~~~v~~~~fs~~g---------~~l~s-------------------~s~d~~i~iw~~~~~~~----~~~~~~H~~~V~ 56 (313)
+.+.|++++|+|++ ++||+ ++.|++|+||++.+++. ..++.+|.+.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~ 211 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVW 211 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEE
Confidence 56677788888775 45554 56789999999987764 245778899999
Q ss_pred EEEECCC------CCeEEEeeCCCcEEEEECCCCeEE-----------EEe-cCCCCeeEEEeecCCeEEEEECCCceec
Q 021399 57 CCDVSRD------SMTLITGSADQTAKLWNVETGAQL-----------FTF-NFDSPARSVDFAVGDKLAVITTDPFMEL 118 (313)
Q Consensus 57 ~~~~~~~------~~~l~s~s~D~~v~vWd~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (313)
+++|+|+ +.+|+|++.||+|++||+.+++.. ..+ .+...+.++.|+++..++.++.+..
T Consensus 212 ~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~Dgt--- 288 (524)
T 2j04_B 212 DLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGF--- 288 (524)
T ss_dssp EEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSE---
T ss_pred EEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCE---
Confidence 9999996 579999999999999999765311 122 2346788899988776666655543
Q ss_pred cccceeeeeeeCCCCCCCceEEEecCCCCceEEE--EEccCC-CEEEEeeCCCeEEEEECCCCceeeecccccCce--ec
Q 021399 119 NSAIHVKRIARDPADQGGESVLILKGPQGRINRA--VWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDKETGHK--KT 193 (313)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~--~~ 193 (313)
+.+|++... ..+...+.+|.+.|.++ .|+|++ .+|++|+.|++|+|||+++++++..+. +|. ..
T Consensus 289 ---V~lWD~~~~-----~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~---~~~~~~~ 357 (524)
T 2j04_B 289 ---VAEFDLTDP-----EVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV---SRFRGSN 357 (524)
T ss_dssp ---EEEEETTBC-----SSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE---EECSCCS
T ss_pred ---EEEEECCCC-----CCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc---cccccCc
Confidence 334443211 12334567899999998 568887 889999999999999998876544332 343 24
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCce----
Q 021399 194 ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKF---- 268 (313)
Q Consensus 194 v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~---- 268 (313)
|.+++|+|++..+++++.|++|++||++++.++.++. +...|.+++|+|++..+++++ .| ..+.+||...+.+
T Consensus 358 v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs-~D-gtv~lwd~~~~~~~~~~ 435 (524)
T 2j04_B 358 LVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGS-AD-GSLIITNAARRLLHGIK 435 (524)
T ss_dssp CCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEE-TT-TEEECCBSCSSTTTCC-
T ss_pred ccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEE-CC-CEEEEEechHhhccccc
Confidence 7899999999999999999999999999988866664 567899999999998766543 33 3455555321110
Q ss_pred ---------------------eeeeee------h-hhhhhhccccccccceeEEEECCCCC---eeEE
Q 021399 269 ---------------------EAKFFD------K-ILQEEIGGVKGHFGPINALAFNPDGK---RYGF 305 (313)
Q Consensus 269 ---------------------~~~~~~------~-~~~~~~~~~~~h~~~V~~~~fspdgk---~~~~ 305 (313)
.+++|+ . .++..+..+.+|.++|++|+||||++ .+|.
T Consensus 436 ~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAs 503 (524)
T 2j04_B 436 NSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAF 503 (524)
T ss_dssp -----CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEE
T ss_pred cCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHh
Confidence 012222 0 13455677889999999999999975 5553
No 68
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-33 Score=279.90 Aligned_cols=267 Identities=19% Similarity=0.240 Sum_probs=228.2
Q ss_pred cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (313)
Q Consensus 9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~ 88 (313)
+...+.+++|+|+++++++|+.||.|++|+..+++....+.+|.+.|.+++|+|+++.+++++.|++|++||+.+++...
T Consensus 960 ~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1039 (1249)
T 3sfz_A 960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF 1039 (1249)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC
T ss_pred ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCC
Q 021399 89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168 (313)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~ 168 (313)
...+...+..+.+.++..++.+..+.. +.++++. .+.....+.+|.+.|.+++|+|+++.+++++.|+
T Consensus 1040 ~~~~~~~v~~~~~~~~~~l~~~~~dg~------v~vwd~~------~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~ 1107 (1249)
T 3sfz_A 1040 LQAHQETVKDFRLLQDSRLLSWSFDGT------VKVWNVI------TGRIERDFTCHQGTVLSCAISSDATKFSSTSADK 1107 (1249)
T ss_dssp CBCCSSCEEEEEECSSSEEEEEESSSE------EEEEETT------TTCCCEEEECCSSCCCCEEECSSSSSCEEECCSS
T ss_pred EecCCCcEEEEEEcCCCcEEEEECCCc------EEEEECC------CCceeEEEcccCCcEEEEEECCCCCEEEEEcCCC
Confidence 666677888999999888877766543 2333332 2344566788999999999999999999999999
Q ss_pred eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE----------ecCCceeEE
Q 021399 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY----------VTERPVNAV 238 (313)
Q Consensus 169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----------~~~~~~~~~ 238 (313)
.|++||+.+++++..+ .+|...|++++|+|+|.+|++++.||.|++||+++++++..+ .+...+.++
T Consensus 1108 ~v~iwd~~~~~~~~~l---~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 1184 (1249)
T 3sfz_A 1108 TAKIWSFDLLSPLHEL---KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDV 1184 (1249)
T ss_dssp CCCEECSSSSSCSBCC---CCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEE
T ss_pred cEEEEECCCcceeeee---ccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEE
Confidence 9999999988776554 368899999999999999999999999999999998876654 245579999
Q ss_pred EeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
+|+|++..++++++ .+++||..+++.+..+.+|.++|++++|+|||+.++..
T Consensus 1185 ~fs~dg~~l~s~~g----------------~v~vwd~~~g~~~~~~~~~~~~i~~~~~s~dg~~l~~~ 1236 (1249)
T 3sfz_A 1185 CFSPDSKTLVSAGG----------------YLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVTV 1236 (1249)
T ss_dssp EECTTSSCEEEESS----------------SEEEBCSSSCBCCCCCCCSSCCCCCCEECSSSCCEEEE
T ss_pred EECCCCCEEEECCC----------------eEEEEECCCCceeeeeeccCCcccEEEECCCCCEEEEe
Confidence 99999998877642 25677777777778888999999999999999988764
No 69
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=246.74 Aligned_cols=278 Identities=13% Similarity=0.180 Sum_probs=207.8
Q ss_pred cccccceeEEEEccCCC-EEEEe----------eCCCCeEEEeCCCCc---EEEEecCCCCceEEEEECCCCCeEEEeeC
Q 021399 7 KGHERPLTYLKYNKDGD-LLFSC----------AKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSMTLITGSA 72 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~-~l~s~----------s~d~~i~iw~~~~~~---~~~~~~~H~~~V~~~~~~~~~~~l~s~s~ 72 (313)
..+...|.+++|+|+|+ +|++| +.|+.|+|||+.+++ .+..+ .|...|.+++|+|++++|++++.
T Consensus 9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~ 87 (416)
T 2pm9_A 9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALD 87 (416)
T ss_dssp -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEES
T ss_pred HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEcc
Confidence 34566799999999997 99999 899999999999876 33333 58999999999999999999999
Q ss_pred CCcEEEEECCC----CeEEEEec-CCCCeeEEEeecC-CeEEE-EECCCceeccccceeeeeeeCCCCC---CCceEEEe
Q 021399 73 DQTAKLWNVET----GAQLFTFN-FDSPARSVDFAVG-DKLAV-ITTDPFMELNSAIHVKRIARDPADQ---GGESVLIL 142 (313)
Q Consensus 73 D~~v~vWd~~~----~~~~~~~~-~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 142 (313)
|+.|++||+.+ .+.+..+. +...+..+.|.++ ...++ ...+.. +.++++....... ........
T Consensus 88 dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~------v~iwd~~~~~~~~~~~~~~~~~~~ 161 (416)
T 2pm9_A 88 NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGE------IFIWDMNKCTESPSNYTPLTPGQS 161 (416)
T ss_dssp SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSC------EEBCBTTTTSSCTTTCCCBCCCCS
T ss_pred CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCe------EEEEECCCCccccccccccccccc
Confidence 99999999987 33554443 5668889999985 44444 333333 3333332111000 00011123
Q ss_pred cCCCCceEEEEEccC-CCEEEEeeCCCeEEEEECCCCceeeecccc---cCceeceEEEEECCCC-CEEEEeeCCC---c
Q 021399 143 KGPQGRINRAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKE---TGHKKTITSLAKAADG-SHFLTGSLDK---S 214 (313)
Q Consensus 143 ~~~~~~i~~~~~~~~-~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~---~~h~~~v~~~~~s~~~-~~l~s~s~dg---~ 214 (313)
..|...+.++.|+|+ +..+++++.|+.|++||+++++.+..+... .+|...+.+++|+|++ .++++++.|+ .
T Consensus 162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~ 241 (416)
T 2pm9_A 162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS 241 (416)
T ss_dssp CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence 568889999999999 789999999999999999998877665432 1237889999999997 6899999999 9
Q ss_pred EEEEECCCC-cEEEEEe--cCCceeEEEecc-CCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccc
Q 021399 215 AKLWDARTL-ELIKTYV--TERPVNAVTMSP-LLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGP 290 (313)
Q Consensus 215 i~iwd~~~~-~~~~~~~--~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 290 (313)
|++||++++ +++..+. +...+.+++|+| ++..+++++ .|+ .+++||..+++.+..+.+|..+
T Consensus 242 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~-~dg-------------~v~~wd~~~~~~~~~~~~~~~~ 307 (416)
T 2pm9_A 242 ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSG-RDN-------------TVLLWNPESAEQLSQFPARGNW 307 (416)
T ss_dssp CCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEE-SSS-------------EEEEECSSSCCEEEEEECSSSC
T ss_pred EEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEe-CCC-------------CEEEeeCCCCccceeecCCCCc
Confidence 999999986 5666655 566899999999 666655543 332 2456666666667777899999
Q ss_pred eeEEEECCCC-CeeEE
Q 021399 291 INALAFNPDG-KRYGF 305 (313)
Q Consensus 291 V~~~~fspdg-k~~~~ 305 (313)
|++++|+||+ +.++.
T Consensus 308 v~~~~~s~~~~~~l~s 323 (416)
T 2pm9_A 308 CFKTKFAPEAPDLFAC 323 (416)
T ss_dssp CCCEEECTTCTTEEEE
T ss_pred eEEEEECCCCCCEEEE
Confidence 9999999999 66654
No 70
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.2e-33 Score=242.29 Aligned_cols=237 Identities=21% Similarity=0.313 Sum_probs=189.0
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-------EEEEecCCCCceEEEEECCCC-CeEEEeeCCCc
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-------RLGTYRGHNGAVWCCDVSRDS-MTLITGSADQT 75 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-------~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~ 75 (313)
..+.+|...|.+++|+|+|++|++|+.|+.+++|++.+.. ....+.+|.+.|.++.|+|++ ..|+||+.|++
T Consensus 102 ~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~ 181 (380)
T 3iz6_a 102 HAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQT 181 (380)
T ss_dssp EEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSC
T ss_pred eEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCc
Confidence 3678899999999999999999999999999999987532 345688999999999999974 57999999999
Q ss_pred EEEEECCCCeEEEEec------CCCCeeEEEeec-C-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399 76 AKLWNVETGAQLFTFN------FDSPARSVDFAV-G-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (313)
Q Consensus 76 v~vWd~~~~~~~~~~~------~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (313)
|++||+.+++.+..+. +...+..+.+.+ + ..++.+..+. .+++|++. .....+..+.+|.+
T Consensus 182 i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~------~v~~wd~~-----~~~~~~~~~~~h~~ 250 (380)
T 3iz6_a 182 CVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT------TVRLWDLR-----ITSRAVRTYHGHEG 250 (380)
T ss_dssp EEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS------CEEEEETT-----TTCCCCEEECCCSS
T ss_pred EEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC------eEEEEECC-----CCCcceEEECCcCC
Confidence 9999999998876652 234567777765 3 3444444443 33444432 12234567789999
Q ss_pred ceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeeccccc----CceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC
Q 021399 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET----GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 223 (313)
Q Consensus 148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~----~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~ 223 (313)
.|.++.|+|++++|++|+.|++|++||+.+++.+..+.... .+...+++++|+|+|.+|++|+.||.|++||+.++
T Consensus 251 ~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~ 330 (380)
T 3iz6_a 251 DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA 330 (380)
T ss_dssp CCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC
T ss_pred CeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC
Confidence 99999999999999999999999999999988766543221 22345899999999999999999999999999999
Q ss_pred cEEEEEe-----cCCceeEEEeccCCCEEEEcc
Q 021399 224 ELIKTYV-----TERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 224 ~~~~~~~-----~~~~~~~~~~~p~~~~~~~~~ 251 (313)
+.+..+. +...+.+++|+|++..+++++
T Consensus 331 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 363 (380)
T 3iz6_a 331 EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGS 363 (380)
T ss_dssp CEEEEECCSCSSCCCCCCEEEECSSSSEEEEEC
T ss_pred ceEEEEecccCCCCCceEEEEECCCCCEEEEee
Confidence 8887762 456799999999999876654
No 71
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=8.8e-32 Score=247.83 Aligned_cols=279 Identities=16% Similarity=0.199 Sum_probs=223.0
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC----cEEEEecCCCCc-eEEEEECC--CCCeEEEeeCCCcE
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----ERLGTYRGHNGA-VWCCDVSR--DSMTLITGSADQTA 76 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~----~~~~~~~~H~~~-V~~~~~~~--~~~~l~s~s~D~~v 76 (313)
.....|.+.|.+++|+|+|++|++++ |+.|++||++++ +....+.+|.+. |.+++|+| ++++|++++.||+|
T Consensus 12 ~~~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v 90 (615)
T 1pgu_A 12 PQPSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKV 90 (615)
T ss_dssp CCCCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred CCCCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEE
Confidence 34567899999999999999999998 889999999999 889999999999 99999999 99999999999999
Q ss_pred EEEECCCC--------eEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399 77 KLWNVETG--------AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (313)
Q Consensus 77 ~vWd~~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (313)
++||+.++ +....+. +..++..+.|++++..++........ ...+..++ .+..+..+.+|..
T Consensus 91 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~v~~~d--------~~~~~~~~~~~~~ 161 (615)
T 1pgu_A 91 IVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN-FGVFISWD--------SGNSLGEVSGHSQ 161 (615)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC-SEEEEETT--------TCCEEEECCSCSS
T ss_pred EEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCC-ccEEEEEE--------CCCcceeeecCCc
Confidence 99999754 3444443 46788999999987766554321000 01111111 2346677789999
Q ss_pred ceEEEEEccCCC-EEEEeeCCCeEEEEECCCCceeeecccccCcee---ceEEEEECCC-CCEEEEeeCCCcEEEEECCC
Q 021399 148 RINRAVWGPLNR-TIISAGEDAIVRIWDTETGKLLKESDKETGHKK---TITSLAKAAD-GSHFLTGSLDKSAKLWDART 222 (313)
Q Consensus 148 ~i~~~~~~~~~~-~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~---~v~~~~~s~~-~~~l~s~s~dg~i~iwd~~~ 222 (313)
.|..+.|+|+++ .+++++.|+.|++||..+++.+..+. +|.. .|.+++|+|+ +++|++++.|+.|++||+++
T Consensus 162 ~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 238 (615)
T 1pgu_A 162 RINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDR---THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKS 238 (615)
T ss_dssp CEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEEC---SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTT
T ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeec---ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCC
Confidence 999999999997 89999999999999999888776654 5777 8999999999 99999999999999999999
Q ss_pred CcEEEEE-----ecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCc------------------------------
Q 021399 223 LELIKTY-----VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGK------------------------------ 267 (313)
Q Consensus 223 ~~~~~~~-----~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 267 (313)
++++..+ .+...+.+++|+ ++..+++++. ++.+.+||.+.+.
T Consensus 239 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 315 (615)
T 1pgu_A 239 GEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGA--DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISL 315 (615)
T ss_dssp CCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEET--TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEE
T ss_pred CCEeEEecccccccCCceEEEEEc-CCCEEEEEcC--CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEE
Confidence 9999988 566789999999 7777666543 2446666655322
Q ss_pred ---eeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399 268 ---FEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (313)
Q Consensus 268 ---~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd 299 (313)
..+++||..+++.+..+.+|.++|++++| |+
T Consensus 316 ~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~ 349 (615)
T 1pgu_A 316 SLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP 349 (615)
T ss_dssp ETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT
T ss_pred ECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC
Confidence 13566777667777778888888888888 76
No 72
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-32 Score=262.75 Aligned_cols=236 Identities=13% Similarity=0.093 Sum_probs=185.6
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
....+|...|.+++|+|++++||+|+.||.|+||+..+.+....+ .|...|.+++|+| +++|++++.|++|++||+.+
T Consensus 11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~ 88 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKL-EDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS 88 (902)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEEC-SSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEc-CCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence 456789999999999999999999999999999999887766554 4788999999999 88999999999999999999
Q ss_pred CeEEEEecCCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceE-----------EEecCCCCceEE
Q 021399 84 GAQLFTFNFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESV-----------LILKGPQGRINR 151 (313)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~i~~ 151 (313)
++.+..+.....+.++.|+|+...++.. .+.. +.+|++.. .... ....+|.+.|.+
T Consensus 89 ~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~------V~lwd~~~------~~~~~~~i~~~~~~~~~~~~h~~~V~s 156 (902)
T 2oaj_A 89 QKVLTTVFVPGKITSIDTDASLDWMLIGLQNGS------MIVYDIDR------DQLSSFKLDNLQKSSFFPAARLSPIVS 156 (902)
T ss_dssp CSEEEEEECSSCEEEEECCTTCSEEEEEETTSC------EEEEETTT------TEEEEEEECCHHHHHTCSSSCCCCCCE
T ss_pred CcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCc------EEEEECCC------CccccceeccccccccccccCCCCeEE
Confidence 9888777777788999999876655543 3332 33333211 1110 123578899999
Q ss_pred EEEccC-CCEEEEeeCCCeEEEEECCCCceeeecccc---------------cCceeceEEEEECCCCCEEEEeeCCCcE
Q 021399 152 AVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKE---------------TGHKKTITSLAKAADGSHFLTGSLDKSA 215 (313)
Q Consensus 152 ~~~~~~-~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~---------------~~h~~~v~~~~~s~~~~~l~s~s~dg~i 215 (313)
++|+|. +..+++|+.|+.| +||++++++++.+... ..|...|++++|+|+|.+|++|+.||+|
T Consensus 157 l~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i 235 (902)
T 2oaj_A 157 IQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSL 235 (902)
T ss_dssp EEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCE
T ss_pred EEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeE
Confidence 999996 4789999999999 9999998877665422 2356789999999999999999999999
Q ss_pred EEEECCCCcEEEE--Ee----c-------------CCceeEEEecc----CCCEEEEccccc
Q 021399 216 KLWDARTLELIKT--YV----T-------------ERPVNAVTMSP----LLDHVVLGGGQD 254 (313)
Q Consensus 216 ~iwd~~~~~~~~~--~~----~-------------~~~~~~~~~~p----~~~~~~~~~~~~ 254 (313)
++||+++++++.. +. + ...+.+++|+| ++..++++|+.+
T Consensus 236 ~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~ 297 (902)
T 2oaj_A 236 VFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI 297 (902)
T ss_dssp EEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred EEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence 9999999988754 21 1 23689999965 334666666443
No 73
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.1e-32 Score=240.99 Aligned_cols=267 Identities=13% Similarity=0.153 Sum_probs=203.8
Q ss_pred eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe-c
Q 021399 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF-N 91 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~-~ 91 (313)
+++++|+|+|++|++++.|+.|++||..+++....+..| ..+....|++++++|++|+.|+.|++||+.+++....+ .
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 137 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA 137 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc
Confidence 457999999999999999999999999988777677776 44555678999999999999999999999998887775 4
Q ss_pred CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEE
Q 021399 92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVR 171 (313)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~ 171 (313)
+...+..+.|++++..++.... +..+.+|++. .+..+..+.+|.+.|.++.|+|+++.+++++.|+.|+
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~-----d~~i~iwd~~------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~ 206 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQ-----DMQLKIWSVK------DGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIR 206 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEET-----TSEEEEEETT------TCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred ccCccEEEEECCCCCEEEEEeC-----CCeEEEEeCC------CCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEE
Confidence 6778999999987665544322 2233444432 2334556788999999999999999999999999999
Q ss_pred EEECCCCceeeecccccCceeceEEE---------------------EECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 172 IWDTETGKLLKESDKETGHKKTITSL---------------------AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 172 lwd~~~~~~~~~~~~~~~h~~~v~~~---------------------~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
+||+++++.+..+.....|...+.++ +|+|++++|++|+.||.|++||+++++.+..+.
T Consensus 207 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 286 (420)
T 3vl1_A 207 LWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP 286 (420)
T ss_dssp EEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred EeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc
Confidence 99999988877765444454555554 457899999999999999999999999887775
Q ss_pred --cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh-hccccc-cccceeEEEECCCCCeeEE
Q 021399 231 --TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE-IGGVKG-HFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 231 --~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-h~~~V~~~~fspdgk~~~~ 305 (313)
+...+.+++|+|++..++++++.+ +.+ ++||..+++. +..+.+ |..+|+++.| |+++.++.
T Consensus 287 ~~~~~~v~~~~~~~~~~~~l~~g~~d-g~i------------~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s 351 (420)
T 3vl1_A 287 SKFTCSCNSLTVDGNNANYIYAGYEN-GML------------AQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVS 351 (420)
T ss_dssp CTTSSCEEEEEECSSCTTEEEEEETT-SEE------------EEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEE
T ss_pred cccCCCceeEEEeCCCCCEEEEEeCC-CeE------------EEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEE
Confidence 346799999999998444444443 333 4555444322 344454 6788888865 57776654
No 74
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-32 Score=260.29 Aligned_cols=243 Identities=18% Similarity=0.250 Sum_probs=187.0
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCC--CCcEEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEEEE
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKLW 79 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~--~~~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~vW 79 (313)
.++.+|.++|++++|+|+|++|++|+.||.|+|||+. +++.+.++.+|.+.|++++|+|+ ++++++|+.||+|++|
T Consensus 3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw 82 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 82 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence 5789999999999999999999999999999999988 55678899999999999999988 8999999999999999
Q ss_pred ECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC--
Q 021399 80 NVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL-- 157 (313)
Q Consensus 80 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 157 (313)
|+.+++.. .+..+.+|...|.++.|+|+
T Consensus 83 d~~~~~~~--------------------------------------------------~~~~~~~h~~~V~~v~~sp~~~ 112 (753)
T 3jro_A 83 KEENGRWS--------------------------------------------------QIAVHAVHSASVNSVQWAPHEY 112 (753)
T ss_dssp EEETTEEE--------------------------------------------------EEEEECCCSSCEEEEEECCGGG
T ss_pred ECCCCccc--------------------------------------------------ccccccCCCCCeEEEEECCCCC
Confidence 98765421 12233457788999999999
Q ss_pred CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC-------------CCCEEEEeeCCCcEEEEECCCC-
Q 021399 158 NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-------------DGSHFLTGSLDKSAKLWDARTL- 223 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-------------~~~~l~s~s~dg~i~iwd~~~~- 223 (313)
++.+++|+.|+.|++||+.++...... ...+|...|.+++|+| ++..+++|+.||.|++||++++
T Consensus 113 ~~~l~sgs~dg~I~vwdl~~~~~~~~~-~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~ 191 (753)
T 3jro_A 113 GPLLLVASSDGKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (753)
T ss_dssp CSEEEEEETTSEEEEEECCSSSCCCCE-EEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT
T ss_pred CCEEEEEeCCCcEEEEEeecCCCccee-EeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc
Confidence 999999999999999999876433222 2246889999999999 5899999999999999999886
Q ss_pred ---cEEEEEe-cCCceeEEEeccC---CCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEE
Q 021399 224 ---ELIKTYV-TERPVNAVTMSPL---LDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 296 (313)
Q Consensus 224 ---~~~~~~~-~~~~~~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~f 296 (313)
.+...+. +...+.+++|+|+ +..++ +++.| +.+.+||.+.+.... ...+....+|.+.|++++|
T Consensus 192 ~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~-s~s~D-g~I~iwd~~~~~~~~-------~~~~~~~~~~~~~v~~l~~ 262 (753)
T 3jro_A 192 QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA-SVSQD-RTCIIWTQDNEQGPW-------KKTLLKEEKFPDVLWRASW 262 (753)
T ss_dssp TEEEEEEEECCCSSCEEEEEECCCCSSSEEEE-EEESS-SCEEEEEESSSSSCC-------BCCBSSSSCCSSCCCCEEE
T ss_pred ccceeeeeecCCCCcEEEEEeccCCCCCCEEE-EEecC-CEEEEecCCCCCCcc-------eeEEeccCCCCCceEEEEE
Confidence 3444443 4668999999999 55544 44443 334444443321100 1123344578999999999
Q ss_pred CCCCCeeEEE
Q 021399 297 NPDGKRYGFL 306 (313)
Q Consensus 297 spdgk~~~~~ 306 (313)
+|||+.++..
T Consensus 263 spdg~~l~s~ 272 (753)
T 3jro_A 263 SLSGNVLALS 272 (753)
T ss_dssp CTTTCCEEEE
T ss_pred cCCCCEEEEE
Confidence 9999988754
No 75
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.7e-31 Score=248.74 Aligned_cols=231 Identities=19% Similarity=0.292 Sum_probs=187.4
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
..+.+|...|.+++|+|+|++|+||+.|+.|+|||+.+++.+..+.+|.+.|.+++|+|+++.|+||+.|++|++||+..
T Consensus 424 ~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~ 503 (694)
T 3dm0_A 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG 503 (694)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred ceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CeEEEEec----CCCCeeEEEeecCC---eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 84 GAQLFTFN----FDSPARSVDFAVGD---KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 84 ~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
........ +...+.++.|+++. .++..+.+.. +++|++. .......+.+|.+.|.+++|+|
T Consensus 504 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~------v~vwd~~------~~~~~~~~~~h~~~v~~v~~sp 571 (694)
T 3dm0_A 504 ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT------VKVWNLS------NCKLRSTLAGHTGYVSTVAVSP 571 (694)
T ss_dssp CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSC------EEEEETT------TCCEEEEECCCSSCEEEEEECT
T ss_pred CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCe------EEEEECC------CCcEEEEEcCCCCCEEEEEEeC
Confidence 54333321 33457888898854 3444444433 3344332 2345667889999999999999
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC---
Q 021399 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--- 233 (313)
Q Consensus 157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--- 233 (313)
+++++++|+.|+.|++||+.+++.+..+. +...+.+++|+|++.++++++ |+.|++||+++++++..+....
T Consensus 572 dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~ 646 (694)
T 3dm0_A 572 DGSLCASGGKDGVVLLWDLAEGKKLYSLE----ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAE 646 (694)
T ss_dssp TSSEEEEEETTSBCEEEETTTTEEEECCB----CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC--
T ss_pred CCCEEEEEeCCCeEEEEECCCCceEEEec----CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccc
Confidence 99999999999999999999988776543 456799999999998777665 6679999999998887664210
Q ss_pred -----------------ceeEEEeccCCCEEEEcc
Q 021399 234 -----------------PVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 234 -----------------~~~~~~~~p~~~~~~~~~ 251 (313)
.+.+++|+|++..+++++
T Consensus 647 ~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs 681 (694)
T 3dm0_A 647 AEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGY 681 (694)
T ss_dssp --------------CCCCEEEEEECTTSSEEEEEE
T ss_pred cccccccccccCCceeEEeeeEEEcCCCCEEEEEc
Confidence 257899999999877654
No 76
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=4.9e-33 Score=243.51 Aligned_cols=234 Identities=14% Similarity=0.136 Sum_probs=160.0
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEE-----EEecCCCCceEEEEECC--------CCCeEEEeeCCC
Q 021399 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-----GTYRGHNGAVWCCDVSR--------DSMTLITGSADQ 74 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~-----~~~~~H~~~V~~~~~~~--------~~~~l~s~s~D~ 74 (313)
.|...+....+++++.+|++++.|++|+|||.++++.. ..+.+|.+.|++++|+| |+++|+|||.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~ 166 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC 166 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence 34444555667778889999999999999999988643 45789999999999997 788999999999
Q ss_pred cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE
Q 021399 75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW 154 (313)
Q Consensus 75 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 154 (313)
+|+|||++++..+. .+..|.+.+.+++|
T Consensus 167 tv~~Wd~~~~~~~~----------------------------------------------------~~~~~~~~v~~v~~ 194 (393)
T 4gq1_A 167 TLIIWRLTDEGPIL----------------------------------------------------AGYPLSSPGISVQF 194 (393)
T ss_dssp EEEEEEEETTEEEE----------------------------------------------------EEEECSSCEEEEEE
T ss_pred eEEEEECCCCceee----------------------------------------------------eecCCCCCcEEEEE
Confidence 99999987654321 22345677889999
Q ss_pred ccCCC-EEEEeeCCCeEEEEECCCCceeeecc----------------------cccCceeceEEEEEC-CCCCEEEEee
Q 021399 155 GPLNR-TIISAGEDAIVRIWDTETGKLLKESD----------------------KETGHKKTITSLAKA-ADGSHFLTGS 210 (313)
Q Consensus 155 ~~~~~-~i~t~~~d~~i~lwd~~~~~~~~~~~----------------------~~~~h~~~v~~~~~s-~~~~~l~s~s 210 (313)
+|++. ++++++.|+.|++||+.+++...... ...+|...+.++.|+ +++..|++++
T Consensus 195 ~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s 274 (393)
T 4gq1_A 195 RPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMC 274 (393)
T ss_dssp ETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEEC
T ss_pred CCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEe
Confidence 99874 79999999999999998765433211 113567778888876 8999999999
Q ss_pred CCCcEEEEECCCCcEEEEEec-CCce------------------eEEEeccC-CCEEEEcccccCceeEeeccCCCceee
Q 021399 211 LDKSAKLWDARTLELIKTYVT-ERPV------------------NAVTMSPL-LDHVVLGGGQDASAVTTTDHRAGKFEA 270 (313)
Q Consensus 211 ~dg~i~iwd~~~~~~~~~~~~-~~~~------------------~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (313)
.|+++++||+++++....+.. ...+ ....++|. ...++++|+.|+ .+
T Consensus 275 ~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg-------------~V 341 (393)
T 4gq1_A 275 KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHG-------------LI 341 (393)
T ss_dssp TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTT-------------EE
T ss_pred CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCC-------------EE
Confidence 999999999988765544321 1111 12233343 333444444332 35
Q ss_pred eeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 271 KFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 271 ~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
++||..+++.+..+.+|..+|++++|||||+++|..
T Consensus 342 ~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~a 377 (393)
T 4gq1_A 342 QLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIA 377 (393)
T ss_dssp EEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 677777676666777899999999999999999875
No 77
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.2e-30 Score=231.92 Aligned_cols=262 Identities=22% Similarity=0.388 Sum_probs=204.5
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
.+.+|.+.|.++.|+ +++|++|+.|+.|++||..+++.+.++.+|...|.+++|+ ++.+++|+.|++|++||+.++
T Consensus 154 ~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~ 229 (445)
T 2ovr_B 154 TLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG 229 (445)
T ss_dssp ECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC
T ss_pred EEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC
Confidence 578899999999997 6699999999999999999999999999999999999996 458999999999999999988
Q ss_pred eEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399 85 AQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (313)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t 163 (313)
+.+..+. +..++.++.+ .+..++.+..+.. +.++++. .+..+..+.+|.+.+.++.| ++.++++
T Consensus 230 ~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~------i~iwd~~------~~~~~~~~~~~~~~v~~~~~--~~~~l~~ 294 (445)
T 2ovr_B 230 QCLHVLMGHVAAVRCVQY-DGRRVVSGAYDFM------VKVWDPE------TETCLHTLQGHTNRVYSLQF--DGIHVVS 294 (445)
T ss_dssp CEEEEEECCSSCEEEEEE-CSSCEEEEETTSC------EEEEEGG------GTEEEEEECCCSSCEEEEEE--CSSEEEE
T ss_pred cEEEEEcCCcccEEEEEE-CCCEEEEEcCCCE------EEEEECC------CCcEeEEecCCCCceEEEEE--CCCEEEE
Confidence 8776664 4556777777 4555555554433 2333322 23456677889999999988 6789999
Q ss_pred eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe----cCCceeEEE
Q 021399 164 AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV----TERPVNAVT 239 (313)
Q Consensus 164 ~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~ 239 (313)
++.|+.|++||+.+++++..+. +|...+.++.++ ++++++|+.||.|++||+++++++..+. +...+.+++
T Consensus 295 ~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~ 369 (445)
T 2ovr_B 295 GSLDTSIRVWDVETGNCIHTLT---GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQ 369 (445)
T ss_dssp EETTSCEEEEETTTCCEEEEEC---CCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEE
T ss_pred EeCCCeEEEEECCCCCEEEEEc---CCcccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEE
Confidence 9999999999999988876653 578888888774 6799999999999999999999998886 455788999
Q ss_pred eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccc-----cccccceeEEEECCCCCeeEEE
Q 021399 240 MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-----KGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~~~fspdgk~~~~~ 306 (313)
|++ +.+++ ++.| +.+.+||.+ +++.+..+ .+|.++|++++|+|+|+.+|..
T Consensus 370 ~~~--~~l~s-~~~d-g~v~iwd~~------------~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~ 425 (445)
T 2ovr_B 370 FNK--NFVIT-SSDD-GTVKLWDLK------------TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG 425 (445)
T ss_dssp ECS--SEEEE-EETT-SEEEEEETT------------TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred ECC--CEEEE-EeCC-CeEEEEECC------------CCceeeeeeccccCCCCceEEEEEecCCEEEEEEc
Confidence 864 44444 3433 334444444 44333333 4689999999999999887753
No 78
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=3.8e-32 Score=240.64 Aligned_cols=253 Identities=19% Similarity=0.228 Sum_probs=192.2
Q ss_pred ccccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCC----------CcEEEEecCCCCceEEEEECCCCC-eEEEee
Q 021399 4 ILMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADN----------GERLGTYRGHNGAVWCCDVSRDSM-TLITGS 71 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~----------~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s 71 (313)
..+.+|.+.|++++|+|+ +.+|++++.||.|++|++.+ .+.+.++.+|...|.+++|+|+++ +|++|+
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 201 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS 201 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence 456789999999999997 68999999999999999986 567788999999999999999988 999999
Q ss_pred CCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEE
Q 021399 72 ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (313)
Q Consensus 72 ~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (313)
.||+|++||+.++.... .. ......+.+|...|.+
T Consensus 202 ~dg~i~vwd~~~~~~~~-------------------------------~~--------------~~~~~~~~~h~~~v~~ 236 (430)
T 2xyi_A 202 DDHTICLWDINATPKEH-------------------------------RV--------------IDAKNIFTGHTAVVED 236 (430)
T ss_dssp TTSCEEEEETTSCCBGG-------------------------------GE--------------EECSEEECCCSSCEEE
T ss_pred CCCeEEEEeCCCCCCCC-------------------------------ce--------------eccceeecCCCCCEee
Confidence 99999999998632100 00 0011234567888999
Q ss_pred EEEcc-CCCEEEEeeCCCeEEEEECCCCc---eeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCC-CcE
Q 021399 152 AVWGP-LNRTIISAGEDAIVRIWDTETGK---LLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDART-LEL 225 (313)
Q Consensus 152 ~~~~~-~~~~i~t~~~d~~i~lwd~~~~~---~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~-~~~ 225 (313)
++|+| .+..|++++.|+.|++||++++. .+..+ ..|...|++++|+|++. .+++|+.||.|++||+++ ..+
T Consensus 237 v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~---~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~ 313 (430)
T 2xyi_A 237 VAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTV---DAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK 313 (430)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEE---ECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC
T ss_pred eEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEe---ecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC
Confidence 99999 67889999999999999998763 33332 36889999999999987 689999999999999998 456
Q ss_pred EEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhh--hhhhccccccccceeEEEECCCCC-
Q 021399 226 IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL--QEEIGGVKGHFGPINALAFNPDGK- 301 (313)
Q Consensus 226 ~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~V~~~~fspdgk- 301 (313)
+..+. +...+.+++|+|++..++++++.++ .+.+||.+....+...-+... .+.+..+.+|...|++++|+|+++
T Consensus 314 ~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 392 (430)
T 2xyi_A 314 LHSFESHKDEIFQVQWSPHNETILASSGTDR-RLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392 (430)
T ss_dssp SEEEECCSSCEEEEEECSSCTTEEEEEETTS-CCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTT
T ss_pred eEEeecCCCCEEEEEECCCCCCEEEEEeCCC-cEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCC
Confidence 66665 5678999999999987666665543 344444332111000000000 234456678999999999999999
Q ss_pred eeEE
Q 021399 302 RYGF 305 (313)
Q Consensus 302 ~~~~ 305 (313)
.++.
T Consensus 393 ~l~s 396 (430)
T 2xyi_A 393 IICS 396 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 79
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-31 Score=237.02 Aligned_cols=268 Identities=15% Similarity=0.137 Sum_probs=198.7
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc---EEEEecC------------------------------------
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRG------------------------------------ 50 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~---~~~~~~~------------------------------------ 50 (313)
..++.+++|+|+|++|+++ .++.|++||+.+++ .+.++..
T Consensus 4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence 3578999999999977765 57899999999998 6665553
Q ss_pred ------------------CCCceEEEEECCCCCeE-EEeeCCCcEEEEECC--CCeEEEEe---cCCCCeeEEEeecCCe
Q 021399 51 ------------------HNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVE--TGAQLFTF---NFDSPARSVDFAVGDK 106 (313)
Q Consensus 51 ------------------H~~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~--~~~~~~~~---~~~~~~~~~~~~~~~~ 106 (313)
|.+.|.+++|+|+++.| ++++.|++|++||+. +++.+..+ .....+..+.|++++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT 162 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence 34479999999999986 899999999999998 77766555 3456788999999776
Q ss_pred EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC---CCEEEEeeCCCeEEEEECCCCceeee
Q 021399 107 LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL---NRTIISAGEDAIVRIWDTETGKLLKE 183 (313)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~i~t~~~d~~i~lwd~~~~~~~~~ 183 (313)
.++.... .+.+..+++..... .......+.+|.+.|.++.|+|+ +++|++++.|+.|++||+.+++.+..
T Consensus 163 ~l~~~~~-----~g~v~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 163 TVIIADK-----FGDVYSIDINSIPE--EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDK 235 (450)
T ss_dssp EEEEEET-----TSEEEEEETTSCCC--SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEE
T ss_pred EEEEEeC-----CCcEEEEecCCccc--ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeee
Confidence 6554432 11122222211110 00022244578899999999999 99999999999999999998877655
Q ss_pred cccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec--------------------------CCceeE
Q 021399 184 SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT--------------------------ERPVNA 237 (313)
Q Consensus 184 ~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--------------------------~~~~~~ 237 (313)
+. .+|...|.+++|+ ++.+|++++.|++|++||+++++++..+.. ...+..
T Consensus 236 ~~--~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 312 (450)
T 2vdu_B 236 WL--FGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK 312 (450)
T ss_dssp EC--CCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred ee--cCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence 32 3689999999999 999999999999999999999998887752 135778
Q ss_pred EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhh---hhhccccccccceeEEEECCCC
Q 021399 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ---EEIGGVKGHFGPINALAFNPDG 300 (313)
Q Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~V~~~~fspdg 300 (313)
++|+|++..+++++..+ ..+.+|+... ... +.+..+.+| +.|++++|+|++
T Consensus 313 i~~~~~~~~l~~~~~~d-~~i~iw~~~~----------~~~~~l~~~~~~~~~-~~v~~~~~~~~~ 366 (450)
T 2vdu_B 313 IIKSKNLPFVAFFVEAT-KCIIILEMSE----------KQKGDLALKQIITFP-YNVISLSAHNDE 366 (450)
T ss_dssp EEECSSSSEEEEEETTC-SEEEEEEECS----------SSTTCEEEEEEEECS-SCEEEEEEETTE
T ss_pred EEEeCCCCEEEEEECCC-CeEEEEEecc----------CCCCceeeccEeccC-CceEEEEecCCc
Confidence 99999999888776333 3344444300 222 334455667 899999999963
No 80
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-32 Score=261.12 Aligned_cols=289 Identities=13% Similarity=0.159 Sum_probs=192.8
Q ss_pred cccccccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCcEEEEecCC------------------CCceEEEEECCCCC
Q 021399 5 LMKGHERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGTYRGH------------------NGAVWCCDVSRDSM 65 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H------------------~~~V~~~~~~~~~~ 65 (313)
.+++|.++|.+++|+|+ +..|++|+.|+.| +||+.+++.+.++.+| ...|++++|+|+|+
T Consensus 146 ~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~ 224 (902)
T 2oaj_A 146 FPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSL 224 (902)
T ss_dssp CSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSS
T ss_pred ccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCC
Confidence 46889999999999996 4799999999999 9999999998888776 57899999999999
Q ss_pred eEEEeeCCCcEEEEECCCCeEEEEecC-------------------CCCeeEEEeec----CC-eEEEEE-CCC-----c
Q 021399 66 TLITGSADQTAKLWNVETGAQLFTFNF-------------------DSPARSVDFAV----GD-KLAVIT-TDP-----F 115 (313)
Q Consensus 66 ~l~s~s~D~~v~vWd~~~~~~~~~~~~-------------------~~~~~~~~~~~----~~-~~~~~~-~~~-----~ 115 (313)
+|+||+.|++|++||+++++.+..... ..++..+.|.+ ++ .+++.. .+. .
T Consensus 225 ~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~ 304 (902)
T 2oaj_A 225 HIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS 304 (902)
T ss_dssp EEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred EEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence 999999999999999999887654211 12466777753 22 333332 211 0
Q ss_pred e-ecccc----------------------ce---------eeeeeeCC---------CC------------------CCC
Q 021399 116 M-ELNSA----------------------IH---------VKRIARDP---------AD------------------QGG 136 (313)
Q Consensus 116 ~-~~~~~----------------------~~---------~~~~~~~~---------~~------------------~~~ 136 (313)
. .++.. .. +.++.... .+ ..+
T Consensus 305 v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g 384 (902)
T 2oaj_A 305 LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSG 384 (902)
T ss_dssp EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTC
T ss_pred EEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCC
Confidence 0 00000 00 00000000 00 000
Q ss_pred ceEE-----------------------------------------EecCCCCceEEEEEccCCCEEEEeeCCCeEEEEEC
Q 021399 137 ESVL-----------------------------------------ILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDT 175 (313)
Q Consensus 137 ~~~~-----------------------------------------~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~ 175 (313)
.... .+.+|...+..++|+|+++.+++|+.|++|++||+
T Consensus 385 ~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~ 464 (902)
T 2oaj_A 385 IFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDA 464 (902)
T ss_dssp CEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEES
T ss_pred CcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEEC
Confidence 0000 01223333444566788999999999999999999
Q ss_pred CCCceee--eccc------ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc-----------------------
Q 021399 176 ETGKLLK--ESDK------ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE----------------------- 224 (313)
Q Consensus 176 ~~~~~~~--~~~~------~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~----------------------- 224 (313)
.++.... .+.. ..+|...|.+++|+||+.+||+|+.||+|++||+.+++
T Consensus 465 ~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (902)
T 2oaj_A 465 SHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLN 544 (902)
T ss_dssp SCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGG
T ss_pred CCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeecccc
Confidence 8764210 0000 12688999999999999999999999999999987652
Q ss_pred ----------------------EEEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhh
Q 021399 225 ----------------------LIKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEI 281 (313)
Q Consensus 225 ----------------------~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (313)
++..+. +...|.+++|+|++ .++++ +. +..+.+||.+..... +. ..+
T Consensus 545 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsg-s~-D~tv~lwd~~~~~~~---~~----~~~ 614 (902)
T 2oaj_A 545 NTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIA-YA-AGSLMLIDRRGPAII---YM----ENI 614 (902)
T ss_dssp GSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEE-ET-TSEEEEEETTTTEEE---EE----EEG
T ss_pred CCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEE-eC-CCcEEEEECCCCeEE---EE----eeh
Confidence 345554 56789999999999 54443 33 334444554332210 00 011
Q ss_pred cccc-ccccceeEEEEC-----CCC---CeeE
Q 021399 282 GGVK-GHFGPINALAFN-----PDG---KRYG 304 (313)
Q Consensus 282 ~~~~-~h~~~V~~~~fs-----pdg---k~~~ 304 (313)
..+. +|.+.|++|+|| ||| +.++
T Consensus 615 ~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~ 646 (902)
T 2oaj_A 615 REISGAQSACVTCIEFVIMEYGDDGYSSILMV 646 (902)
T ss_dssp GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEE
T ss_pred hHhccccccceEEEEEEEEecCCCCCcceEEE
Confidence 3454 899999999999 986 5654
No 81
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=5.6e-30 Score=226.94 Aligned_cols=260 Identities=25% Similarity=0.388 Sum_probs=204.4
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeE
Q 021399 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~ 86 (313)
.+|...|.|+.| ++++|++|+.|+.|++||..+++.+.++.+|.+.|.+++| +++.+++|+.||+|++||+.+++.
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~ 205 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEM 205 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCE
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcE
Confidence 356677888876 7999999999999999999999999999999999999998 678999999999999999999988
Q ss_pred EEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee
Q 021399 87 LFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG 165 (313)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~ 165 (313)
+..+. +...+..+.+.+ +.++.++.+.. +.++++... ........+.+|...|..+.+ +++++++|+
T Consensus 206 ~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~------i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~ 273 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFNN-GMMVTCSKDRS------IAVWDMASP---TDITLRRVLVGHRAAVNVVDF--DDKYIVSAS 273 (435)
T ss_dssp EEEECCCCSCEEEEECCT-TEEEEEETTSC------EEEEECSSS---SCCEEEEEECCCSSCEEEEEE--ETTEEEEEE
T ss_pred EEEEcCCCCcEEEEEEcC-CEEEEeeCCCc------EEEEeCCCC---CCceeeeEecCCCCcEEEEEe--CCCEEEEEe
Confidence 77665 355677777764 45555554433 333433211 111233567789999999988 678999999
Q ss_pred CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCC
Q 021399 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLL 244 (313)
Q Consensus 166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~ 244 (313)
.|+.|++||+.+++.+..+. +|...+.++++ +++++++|+.||.|++||+++++++.++. +...+.+++| ++
T Consensus 274 ~dg~i~vwd~~~~~~~~~~~---~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~ 346 (435)
T 1p22_A 274 GDRTIKVWNTSTCEFVRTLN---GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DN 346 (435)
T ss_dssp TTSEEEEEETTTCCEEEEEE---CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CS
T ss_pred CCCeEEEEECCcCcEEEEEc---CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cC
Confidence 99999999999988877654 68889999998 46899999999999999999999998886 4567889988 44
Q ss_pred CEEEEcccccCceeEeeccCCCceeeeeeehhhhh---------hhccccccccceeEEEECCCCCeeEE
Q 021399 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE---------EIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
..++++ +.|+ .+++||...+. .+..+.+|.++|++++| |++.++.
T Consensus 347 ~~l~sg-~~dg-------------~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s 400 (435)
T 1p22_A 347 KRIVSG-AYDG-------------KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVS 400 (435)
T ss_dssp SEEEEE-ETTS-------------CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEE
T ss_pred CEEEEE-eCCC-------------cEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEE
Confidence 555544 3332 35667766555 56678899999999999 6776654
No 82
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=8.6e-31 Score=249.11 Aligned_cols=229 Identities=20% Similarity=0.279 Sum_probs=189.0
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
..+.+|..+|.+++|+|++++|++++.|+.|++||..+++.+.++.+|.+.|.+++|+|+++.+++++.||+|++||+.+
T Consensus 49 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~ 128 (814)
T 3mkq_A 49 RSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN 128 (814)
T ss_dssp EEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG
T ss_pred EEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred C-eEEEEec-CCCCeeEEEeec-CCeEEE-EECCCceeccccceeeeeeeCCCCCCCceEEEecC-CCCceEEEEEcc--
Q 021399 84 G-AQLFTFN-FDSPARSVDFAV-GDKLAV-ITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWGP-- 156 (313)
Q Consensus 84 ~-~~~~~~~-~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~-- 156 (313)
+ .....+. +..++.++.|+| ++..++ +..+. .+.++++.. +.....+.. +...+..+.|+|
T Consensus 129 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg------~v~vwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~ 196 (814)
T 3mkq_A 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR------TVKVWSLGQ------STPNFTLTTGQERGVNYVDYYPLP 196 (814)
T ss_dssp TSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS------EEEEEETTC------SSCSEEEECCCTTCCCEEEECCST
T ss_pred CceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC------eEEEEECCC------CcceeEEecCCCCCEEEEEEEECC
Confidence 6 4444443 466788999998 444443 33333 233333211 122223333 447899999999
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCce
Q 021399 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPV 235 (313)
Q Consensus 157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~ 235 (313)
+++++++++.|+.|++||+.+++.+..+. +|...|.+++|+|++.+|++++.||.|++||+.+++++..+.. ...+
T Consensus 197 ~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v 273 (814)
T 3mkq_A 197 DKPYMITASDDLTIKIWDYQTKSCVATLE---GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERS 273 (814)
T ss_dssp TCCEEEEECTTSEEEEEETTTTEEEEEEE---CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSE
T ss_pred CCCEEEEEeCCCEEEEEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcE
Confidence 89999999999999999999888766553 5888999999999999999999999999999999999888764 4679
Q ss_pred eEEEeccCCCEE
Q 021399 236 NAVTMSPLLDHV 247 (313)
Q Consensus 236 ~~~~~~p~~~~~ 247 (313)
.+++|+|++..+
T Consensus 274 ~~~~~~~~~~~~ 285 (814)
T 3mkq_A 274 WCIATHPTGRKN 285 (814)
T ss_dssp EEEEECTTCGGG
T ss_pred EEEEEccCCCce
Confidence 999999998764
No 83
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.9e-31 Score=222.75 Aligned_cols=199 Identities=20% Similarity=0.334 Sum_probs=155.4
Q ss_pred ccccccccceeEEEEccC--CCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEE
Q 021399 4 ILMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAK 77 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~--g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~ 77 (313)
.+|.+|.++|.+++|+|+ |++|+||+.|++|+|||+.+++ .+.++.+|...|.+++|+|+ +++|++++.|++|+
T Consensus 47 ~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~ 126 (297)
T 2pm7_B 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVS 126 (297)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred EEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEE
Confidence 378899999999999864 8999999999999999999874 56778899999999999997 78999999999999
Q ss_pred EEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (313)
Q Consensus 78 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (313)
+||++++.... ...+.+|...+.++.|+|.
T Consensus 127 ~wd~~~~~~~~--------------------------------------------------~~~~~~h~~~v~~~~~~p~ 156 (297)
T 2pm7_B 127 VVEFKENGTTS--------------------------------------------------PIIIDAHAIGVNSASWAPA 156 (297)
T ss_dssp EEEBCSSSCBC--------------------------------------------------CEEEECCSSCEEEEEECCC
T ss_pred EEEecCCCcee--------------------------------------------------eeeeecccCccceEeecCC
Confidence 99987642100 0112345555666666664
Q ss_pred -------------CCEEEEeeCCCeEEEEECCCCce-eeecccccCceeceEEEEECCCC---CEEEEeeCCCcEEEEEC
Q 021399 158 -------------NRTIISAGEDAIVRIWDTETGKL-LKESDKETGHKKTITSLAKAADG---SHFLTGSLDKSAKLWDA 220 (313)
Q Consensus 158 -------------~~~i~t~~~d~~i~lwd~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~dg~i~iwd~ 220 (313)
+++|++|+.|+.|++||+.+++. ........+|...|.+++|+|++ .+|++++.|++|++||+
T Consensus 157 ~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~ 236 (297)
T 2pm7_B 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQ 236 (297)
T ss_dssp C------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEe
Confidence 56899999999999999876541 11111234799999999999985 89999999999999999
Q ss_pred CCCc---EEEEE---ecCCceeEEEeccCCCEEEEccc
Q 021399 221 RTLE---LIKTY---VTERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 221 ~~~~---~~~~~---~~~~~~~~~~~~p~~~~~~~~~~ 252 (313)
++.. ....+ .+...+.+++|+|++..+++++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~ 274 (297)
T 2pm7_B 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG 274 (297)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEET
T ss_pred CCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcC
Confidence 8743 11222 23457899999999998776654
No 84
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-31 Score=238.05 Aligned_cols=242 Identities=11% Similarity=0.134 Sum_probs=179.1
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCC-----ceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG-----AVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~-----~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
.|.+.|.+++|||||++|++++.||.|+|||.+. ++..+. |.. .|.+++|||||++|++|+.||+|++||+.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence 5688899999999999999999999999999544 677777 776 49999999999999999999999999988
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe----cCCCCceEEEEEccCC
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL----KGPQGRINRAVWGPLN 158 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~~ 158 (313)
+++.. .+ + -..+..+ .+|.+.|.+++|+|++
T Consensus 160 ~~~l~------~~----------~-----------------------------~i~l~ti~~~~~gh~~~V~sVawSPdg 194 (588)
T 2j04_A 160 KNSEN------TP----------E-----------------------------FYFESSIRLSDAGSKDWVTHIVWYEDV 194 (588)
T ss_dssp CCTTT------CC----------C-----------------------------CEEEEEEECSCTTCCCCEEEEEEETTE
T ss_pred CCccc------cc----------c-----------------------------ceeeeeeecccccccccEEEEEEcCCc
Confidence 75310 00 0 0001111 4577899999999998
Q ss_pred CEEEEeeCCCeEEEEECCCCcee---eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE-EEEEecCCc
Q 021399 159 RTIISAGEDAIVRIWDTETGKLL---KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL-IKTYVTERP 234 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~---~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~ 234 (313)
+++++.|+.|++||+..+... +++. .+|...|.+++|+ |+.||+++ |++|++||+.+++. ...+.+...
T Consensus 195 --Laass~D~tVrlWd~~~~~~~~~~~tL~--~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~ 267 (588)
T 2j04_A 195 --LVAALSNNSVFSMTVSASSHQPVSRMIQ--NASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLEN 267 (588)
T ss_dssp --EEEEETTCCEEEECCCSSSSCCCEEEEE--CCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSC
T ss_pred --EEEEeCCCeEEEEECCCCccccceeeec--ccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCce
Confidence 888999999999999876632 2221 2588899999999 68899997 79999999998887 444356678
Q ss_pred eeEEEe--ccCCCEEEEcccccCceeEeecc----CCC------ceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399 235 VNAVTM--SPLLDHVVLGGGQDASAVTTTDH----RAG------KFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302 (313)
Q Consensus 235 ~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~----~~~------~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~ 302 (313)
+..++| +|++..++++.-+.. -++..|. ..+ ...+++|+.... .+..+.+ ...|++++|||||+.
T Consensus 268 V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~-~l~~~~~-~~~I~~va~SPdG~~ 344 (588)
T 2j04_A 268 FHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWN-EFNNYET-TLVIHGISLSPDGYS 344 (588)
T ss_dssp CCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTT-SSSSSCC-EEEEEEEEECTTSSE
T ss_pred EEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCC-ceeeecc-ceEEEEEEECCCCCE
Confidence 999999 999877766653322 2222210 000 112455654322 3445544 778999999999999
Q ss_pred eEEEE
Q 021399 303 YGFLL 307 (313)
Q Consensus 303 ~~~~~ 307 (313)
+|...
T Consensus 345 lA~~~ 349 (588)
T 2j04_A 345 IAIVY 349 (588)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 88754
No 85
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.9e-31 Score=227.61 Aligned_cols=208 Identities=9% Similarity=0.016 Sum_probs=158.4
Q ss_pred cccccceeEEEEccCCCEEEEe--eCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 7 KGHERPLTYLKYNKDGDLLFSC--AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s~--s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
..+...+.+++|||||++|+++ +.|++|+|||+++++.+.+++ |.+.|.+++|+|||+++++++.| .+++|+..++
T Consensus 130 ~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~ 207 (365)
T 4h5i_A 130 TNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTG 207 (365)
T ss_dssp CCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTC
T ss_pred CCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccC
Confidence 3455668899999999998754 478999999999999988886 77899999999999999998855 5666666666
Q ss_pred eEEEEec---CCCCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399 85 AQLFTFN---FDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 85 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (313)
+.+.... ....+..+.|+|++..++... +.... ..+..+++.. ..........+.+|...|.+++|+|++++
T Consensus 208 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~--~~i~~~~~~~--~~~~~~~~~~~~~~~~~V~~~~~Spdg~~ 283 (365)
T 4h5i_A 208 SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKG--IVLTKISIKS--GNTSVLRSKQVTNRFKGITSMDVDMKGEL 283 (365)
T ss_dssp CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCC--EEEEEEEEET--TEEEEEEEEEEESSCSCEEEEEECTTSCE
T ss_pred cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcce--eEEeeccccc--ceecceeeeeecCCCCCeEeEEECCCCCc
Confidence 6554332 234577888999877665543 21100 0111222211 00011223456788999999999999999
Q ss_pred EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (313)
Q Consensus 161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (313)
||+|+.|+.|+|||+++++++.++. .+|...|++++|+|||++|||||.|++|||||+..
T Consensus 284 lasgs~D~~V~iwd~~~~~~~~~~~--~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 284 AVLASNDNSIALVKLKDLSMSKIFK--QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEET--TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred eEEEcCCCEEEEEECCCCcEEEEec--CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 9999999999999999998877643 47999999999999999999999999999999864
No 86
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.1e-32 Score=233.96 Aligned_cols=194 Identities=14% Similarity=0.149 Sum_probs=154.9
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc---EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE---RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~---~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd 80 (313)
..+.+|.+.|.+++|+|++++|++++.|+.|++||+.+++ ....+.+|...|.+++|+|++++|++++.|++|++||
T Consensus 49 ~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd 128 (377)
T 3dwl_C 49 RTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCY 128 (377)
T ss_dssp CCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECC
T ss_pred EEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEE
Confidence 4688999999999999999999999999999999999887 6778889999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC-CCCceEEEEEccCCC
Q 021399 81 VETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWGPLNR 159 (313)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~ 159 (313)
+++++... ....+.. |...|.++.|+|+++
T Consensus 129 ~~~~~~~~-------------------------------------------------~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 129 FEQENDWW-------------------------------------------------VSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp C-----CC-------------------------------------------------CCEEECSSCCSCEEEEEECTTSS
T ss_pred ECCcccce-------------------------------------------------eeeEeecccCCCeEEEEEcCCCC
Confidence 87653200 0112233 778899999999999
Q ss_pred EEEEeeCCCeEEEEECCC------------------CceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC
Q 021399 160 TIISAGEDAIVRIWDTET------------------GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR 221 (313)
Q Consensus 160 ~i~t~~~d~~i~lwd~~~------------------~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~ 221 (313)
++++++.|+.|++||+.. ++++..+ +|...|.+++|+|++++|++++.||.|++||++
T Consensus 160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~ 235 (377)
T 3dwl_C 160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS 235 (377)
T ss_dssp EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc----cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 999999999999999853 2233222 688999999999999999999999999999999
Q ss_pred CCcE----EEEEe-cCCceeEEEeccCCCEEEEc
Q 021399 222 TLEL----IKTYV-TERPVNAVTMSPLLDHVVLG 250 (313)
Q Consensus 222 ~~~~----~~~~~-~~~~~~~~~~~p~~~~~~~~ 250 (313)
++++ +..+. +...+.+++|+|++..++++
T Consensus 236 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 269 (377)
T 3dwl_C 236 APEQPPRALITVKLSQLPLRSLLWANESAIVAAG 269 (377)
T ss_dssp STTSCEEECCCEECSSSCEEEEEEEETTEEEEEE
T ss_pred CCCCcceeeEeecCCCCceEEEEEcCCCCEEEEE
Confidence 9876 55554 45679999999998765543
No 87
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=5.8e-31 Score=229.90 Aligned_cols=229 Identities=15% Similarity=0.189 Sum_probs=185.8
Q ss_pred ccccccccceeEEEEccC----C---CEEEEeeCCCCeEEEeCCCCcE-----EEEecCC-----CCceEEEEEC----C
Q 021399 4 ILMKGHERPLTYLKYNKD----G---DLLFSCAKDHTPTVWFADNGER-----LGTYRGH-----NGAVWCCDVS----R 62 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~----g---~~l~s~s~d~~i~iw~~~~~~~-----~~~~~~H-----~~~V~~~~~~----~ 62 (313)
..+.+|...|.+++|+|+ | ++|++++.|+.|++|++.+++. +..+.+| ...|.+++|+ |
T Consensus 56 ~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 135 (397)
T 1sq9_A 56 YSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR 135 (397)
T ss_dssp EEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC--
T ss_pred eEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCC
Confidence 467789999999999999 9 9999999999999999998886 8889999 5999999999 9
Q ss_pred CCCe-EEEeeCCCcEEEEECCC------CeEEE-----Ee--------cCCCCeeEEEeecCCeEEEEECCCceeccccc
Q 021399 63 DSMT-LITGSADQTAKLWNVET------GAQLF-----TF--------NFDSPARSVDFAVGDKLAVITTDPFMELNSAI 122 (313)
Q Consensus 63 ~~~~-l~s~s~D~~v~vWd~~~------~~~~~-----~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (313)
+++. |++++.|+.|++||+.+ ++.+. .+ .....+.++.|.+++ .++.... ++.+
T Consensus 136 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~-----dg~i 209 (397)
T 1sq9_A 136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN-----NGTV 209 (397)
T ss_dssp --CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT-----TSEE
T ss_pred CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC-----CCcE
Confidence 9999 99999999999999987 44332 33 135678889999877 4444332 2223
Q ss_pred eeeeeeeCCCCCCCceEEEecC---C---CCceEEEEEccCCCEEEEeeCC---CeEEEEECCCCceeeecccc------
Q 021399 123 HVKRIARDPADQGGESVLILKG---P---QGRINRAVWGPLNRTIISAGED---AIVRIWDTETGKLLKESDKE------ 187 (313)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~---~---~~~i~~~~~~~~~~~i~t~~~d---~~i~lwd~~~~~~~~~~~~~------ 187 (313)
.++++. ....+..+.. | ...+.++.|+|+++++++++.| +.|++||+.+++.+..+...
T Consensus 210 ~i~d~~------~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~ 283 (397)
T 1sq9_A 210 QISELS------TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA 283 (397)
T ss_dssp EEEETT------TTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC------
T ss_pred EEEECC------CCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccc
Confidence 333321 2456666777 8 8999999999999999999999 99999999988877665420
Q ss_pred ----cCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe------c----------------CCceeEEEec
Q 021399 188 ----TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV------T----------------ERPVNAVTMS 241 (313)
Q Consensus 188 ----~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------~----------------~~~~~~~~~~ 241 (313)
..|...|.+++|+|++++|++++.||.|++||+++++++..+. . ...+.+++|+
T Consensus 284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~ 363 (397)
T 1sq9_A 284 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL 363 (397)
T ss_dssp --CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEE
T ss_pred cccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEec
Confidence 0188899999999999999999999999999999999998887 3 5679999999
Q ss_pred cCC
Q 021399 242 PLL 244 (313)
Q Consensus 242 p~~ 244 (313)
|++
T Consensus 364 ~~g 366 (397)
T 1sq9_A 364 KKG 366 (397)
T ss_dssp CTT
T ss_pred ccc
Confidence 998
No 88
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.5e-29 Score=224.78 Aligned_cols=261 Identities=29% Similarity=0.486 Sum_probs=201.1
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
+..+.+|.+.|.. +++++|++|++|+.||.|++||..+++.+.++.+|.+.|++++|+ ++.+++|+.||+|++||+.
T Consensus 111 ~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~ 187 (445)
T 2ovr_B 111 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE 187 (445)
T ss_dssp CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred eEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence 4578999998643 355679999999999999999999999999999999999999997 5699999999999999999
Q ss_pred CCeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 83 TGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
+++.+..+. +...+..+.+. +..++.+..+.. +.++++. .+..+..+.+|...+.++.+ +++.+
T Consensus 188 ~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~------i~~wd~~------~~~~~~~~~~~~~~v~~~~~--~~~~l 252 (445)
T 2ovr_B 188 TGECIHTLYGHTSTVRCMHLH-EKRVVSGSRDAT------LRVWDIE------TGQCLHVLMGHVAAVRCVQY--DGRRV 252 (445)
T ss_dssp TTEEEEEECCCSSCEEEEEEE-TTEEEEEETTSE------EEEEESS------SCCEEEEEECCSSCEEEEEE--CSSCE
T ss_pred cCcEEEEECCCCCcEEEEEec-CCEEEEEeCCCE------EEEEECC------CCcEEEEEcCCcccEEEEEE--CCCEE
Confidence 998887765 45567777774 445555554433 3333332 24456677889999999988 67889
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEe
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTM 240 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~ 240 (313)
++++.|+.|++||+.+++.+..+. +|...+.++++ ++.++++++.|+.|++||+++++++..+.. ...+.++++
T Consensus 253 ~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 327 (445)
T 2ovr_B 253 VSGAYDFMVKVWDPETETCLHTLQ---GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL 327 (445)
T ss_dssp EEEETTSCEEEEEGGGTEEEEEEC---CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE
T ss_pred EEEcCCCEEEEEECCCCcEeEEec---CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE
Confidence 999999999999999888776654 68889999998 789999999999999999999999888753 445666665
Q ss_pred ccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccc---cccceeEEEECCCCCeeE
Q 021399 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG---HFGPINALAFNPDGKRYG 304 (313)
Q Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~V~~~~fspdgk~~~ 304 (313)
+ ++.++++ +.++ . +++||..+++.+..+.+ |..+|++++|++ +.++
T Consensus 328 ~--~~~l~~~-~~dg-~------------i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~ 376 (445)
T 2ovr_B 328 K--DNILVSG-NADS-T------------VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVI 376 (445)
T ss_dssp E--TTEEEEE-ETTS-C------------EEEEETTTCCEEEEECSTTSCSSCEEEEEECS--SEEE
T ss_pred e--CCEEEEE-eCCC-e------------EEEEECCCCcEEEEEccCCCCCCCEEEEEECC--CEEE
Confidence 4 4555544 3332 3 34555544444444444 899999999964 4544
No 89
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=6.9e-30 Score=220.51 Aligned_cols=238 Identities=8% Similarity=0.033 Sum_probs=169.0
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeE-EEeeCCCcEEEEECCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVET 83 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~ 83 (313)
.+.+|...|.+++|+|||++|++|+.|+ ++||+.++++.......+ .+..+++.++++.+ ++++.|++|++||+.+
T Consensus 14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~ 90 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR--HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK 90 (355)
T ss_dssp -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS--CCCEEEECTTSSEEEEECSSTTEEEEEETTT
T ss_pred ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC--CeEEEEEcCCCCEEEEEECCccEEEEEECCC
Confidence 4588999999999999999999998775 789999888766544332 47778888887766 6788899999999999
Q ss_pred CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (313)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t 163 (313)
++.+..+.+..++..+.+.++...++ . + ..+.++++.... ..+..+.. +...+++++ ..++.
T Consensus 91 ~~~~~~~~~~~~v~~v~~~~~~~~~~-~-~------~~i~i~d~~~~~-----~~~~~~~~---~~~~~~~s~--~~la~ 152 (355)
T 3vu4_A 91 KQDVSRIKVDAPVKDLFLSREFIVVS-Y-G------DVISVFKFGNPW-----KRITDDIR---FGGVCEFSN--GLLVY 152 (355)
T ss_dssp TEEEEEEECSSCEEEEEECSSEEEEE-E-T------TEEEEEESSTTC-----CBSSCCEE---EEEEEEEET--TEEEE
T ss_pred CcEEEEEECCCceEEEEEcCCEEEEE-E-c------CEEEEEECCCCc-----eeeEEecc---CCceEEEEc--cEEEE
Confidence 99988888878888888876543332 2 2 223334332210 00001111 233445566 55665
Q ss_pred --eeCCCeEEEEECCCCcee------------ee-cccccCceeceEEEEECCCCCEEEEeeCCCc-EEEEECCCCcEEE
Q 021399 164 --AGEDAIVRIWDTETGKLL------------KE-SDKETGHKKTITSLAKAADGSHFLTGSLDKS-AKLWDARTLELIK 227 (313)
Q Consensus 164 --~~~d~~i~lwd~~~~~~~------------~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~-i~iwd~~~~~~~~ 227 (313)
|+.||.|++||+.++... .. .....+|...|++++|+|+|++|++|+.|++ |++||+++++++.
T Consensus 153 ~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~ 232 (355)
T 3vu4_A 153 SNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR 232 (355)
T ss_dssp EESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE
T ss_pred eCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 689999999999875410 00 1223479999999999999999999999998 9999999999999
Q ss_pred EEe---cCCceeEEEeccCCCEEEEcccccCceeEeeccCC
Q 021399 228 TYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA 265 (313)
Q Consensus 228 ~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 265 (313)
++. +...+.+++|+|++..+++++. +..+.+||.+.
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~--d~~v~iw~~~~ 271 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSD--KWTLHVFEIFN 271 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEET--TCEEEEEESSC
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEEC--CCEEEEEEccC
Confidence 987 6778999999999988776543 34566666544
No 90
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.98 E-value=3.6e-29 Score=213.83 Aligned_cols=231 Identities=21% Similarity=0.298 Sum_probs=185.3
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
..+++|...|.+++|+|+|++|++++.|+.|++|+............+...+....++++++.+++++.|+.+++||+..
T Consensus 80 ~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~ 159 (340)
T 4aow_A 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG 159 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred EEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCC
Confidence 36789999999999999999999999999999999999999989999999999999999999999999999999999987
Q ss_pred CeEEEEec--CCCCeeEEEeecCC--eE-EEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399 84 GAQLFTFN--FDSPARSVDFAVGD--KL-AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (313)
Q Consensus 84 ~~~~~~~~--~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (313)
........ ....+..+.+.+.. .+ +....+.. +.++++ .....+..+.+|.+.|.+++|+|++
T Consensus 160 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~------i~i~d~------~~~~~~~~~~~h~~~v~~~~~s~~~ 227 (340)
T 4aow_A 160 VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL------VKVWNL------ANCKLKTNHIGHTGYLNTVTVSPDG 227 (340)
T ss_dssp CEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC------EEEEET------TTTEEEEEECCCSSCEEEEEECTTS
T ss_pred CceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE------EEEEEC------CCCceeeEecCCCCcEEEEEECCCC
Confidence 65443322 24456667776532 22 22223322 223322 2345667788999999999999999
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe--------
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-------- 230 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------- 230 (313)
++|++|+.|+.|++||+.+.+.+..+. +...+.+++++|++. +++++.|+.|++||++++.++..+.
T Consensus 228 ~~l~s~s~Dg~i~iwd~~~~~~~~~~~----~~~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 302 (340)
T 4aow_A 228 SLCASGGKDGQAMLWDLNEGKHLYTLD----GGDIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSS 302 (340)
T ss_dssp SEEEEEETTCEEEEEETTTTEEEEEEE----CSSCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC------
T ss_pred CEEEEEeCCCeEEEEEeccCceeeeec----CCceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeec
Confidence 999999999999999999988776653 456799999999876 5667789999999999988776653
Q ss_pred --cCCceeEEEeccCCCEEEEcc
Q 021399 231 --TERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 231 --~~~~~~~~~~~p~~~~~~~~~ 251 (313)
+...+.+++|+|++..+++++
T Consensus 303 ~~h~~~v~~l~~s~dg~~l~sgs 325 (340)
T 4aow_A 303 KAEPPQCTSLAWSADGQTLFAGY 325 (340)
T ss_dssp -CCCCCEEEEEECTTSSEEEEEE
T ss_pred cCCCCCEEEEEECCCCCEEEEEe
Confidence 234689999999998877654
No 91
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.98 E-value=9.7e-31 Score=226.66 Aligned_cols=246 Identities=13% Similarity=0.119 Sum_probs=181.5
Q ss_pred ccccccccceeEEEEccCCCEEEEe-----------eCCCCeEEEeCCCCcE-E---EEe-----cCCCCceEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSC-----------AKDHTPTVWFADNGER-L---GTY-----RGHNGAVWCCDVSRD 63 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~-----------s~d~~i~iw~~~~~~~-~---~~~-----~~H~~~V~~~~~~~~ 63 (313)
+.|.+|.+.|.+++++ ++.+++| +.|+.+|+|++.+... + ... ..++..+.+++|+||
T Consensus 67 ~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpD 144 (365)
T 4h5i_A 67 FALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISRE 144 (365)
T ss_dssp EECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTT
T ss_pred EEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCC
Confidence 4678899999888765 5566654 4678899998775532 1 111 235567899999999
Q ss_pred CCeEE--EeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE
Q 021399 64 SMTLI--TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 141 (313)
Q Consensus 64 ~~~l~--s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (313)
|++++ +++.|++|+|||+.+++.+..+.....+.++.|+|+++.++...+..... +.. ..........
T Consensus 145 g~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~------~~~----~~~~~~~~~~ 214 (365)
T 4h5i_A 145 GTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEV------IST----VTGSCIARKT 214 (365)
T ss_dssp SSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEE------EET----TTCCEEEEEC
T ss_pred CCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEE------EEe----ccCcceeeee
Confidence 99876 45579999999999999998888888899999999888777665432211 110 0011111223
Q ss_pred ecCCCCceEEEEEccCCCEEEEeeCCC----eEEEEECCCCcee-eecccccCceeceEEEEECCCCCEEEEeeCCCcEE
Q 021399 142 LKGPQGRINRAVWGPLNRTIISAGEDA----IVRIWDTETGKLL-KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAK 216 (313)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~i~t~~~d~----~i~lwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~ 216 (313)
..+|...+..+.|+|+++.+++++.|+ .+++||+...... .......+|...|++++|+|||++||+|+.|++|+
T Consensus 215 ~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~ 294 (365)
T 4h5i_A 215 DFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIA 294 (365)
T ss_dssp CCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred cCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEE
Confidence 456778899999999999999999887 6889998665431 11222346888999999999999999999999999
Q ss_pred EEECCCCcEEEEEe--cCCceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399 217 LWDARTLELIKTYV--TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH 263 (313)
Q Consensus 217 iwd~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (313)
|||+++++++.++. +...|.+++|+|++..++.++ .| +.+.+|+.
T Consensus 295 iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S-~D-~tvrvw~i 341 (365)
T 4h5i_A 295 LVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS-AA-NTIHIIKL 341 (365)
T ss_dssp EEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE-TT-SEEEEEEC
T ss_pred EEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe-CC-CeEEEEEc
Confidence 99999999998874 567899999999999876643 33 33444443
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=2.3e-31 Score=226.17 Aligned_cols=199 Identities=24% Similarity=0.343 Sum_probs=150.2
Q ss_pred cccccccceeEEEEcc--CCCEEEEeeCCCCeEEEeCCCC--cEEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEEE
Q 021399 5 LMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNG--ERLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAKL 78 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~--~g~~l~s~s~d~~i~iw~~~~~--~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~v 78 (313)
.|++|.+.|.+++|+| ++++|+||+.|++|++||..++ +...++.+|...|.+++|+|+ +.+|++|+.|++|++
T Consensus 52 ~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~l 131 (316)
T 3bg1_A 52 DLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131 (316)
T ss_dssp EEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEE
T ss_pred EEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEE
Confidence 5789999999999986 4899999999999999999887 466788999999999999998 789999999999999
Q ss_pred EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC-
Q 021399 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL- 157 (313)
Q Consensus 79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 157 (313)
||++++....... .+.+|...+..+.|+|+
T Consensus 132 wd~~~~~~~~~~~-------------------------------------------------~~~~h~~~v~~~~~~~~~ 162 (316)
T 3bg1_A 132 LTYTGEGQWEVKK-------------------------------------------------INNAHTIGCNAVSWAPAV 162 (316)
T ss_dssp EEECSSSCEEECC-------------------------------------------------BTTSSSSCBCCCEECCCC
T ss_pred EecCCCCCcceee-------------------------------------------------eeccccCCcceEEEcccc
Confidence 9987653211000 00112222222333322
Q ss_pred ----------------CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCC----CEEEEeeCCCcEEE
Q 021399 158 ----------------NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG----SHFLTGSLDKSAKL 217 (313)
Q Consensus 158 ----------------~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~----~~l~s~s~dg~i~i 217 (313)
+++|++|+.|+.|++||++............+|...|++++|+|++ .+|++++.|++|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i 242 (316)
T 3bg1_A 163 VPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI 242 (316)
T ss_dssp CC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred CCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence 4689999999999999987542211222234799999999999987 78999999999999
Q ss_pred EECCCCc----EEEEE-ecCCceeEEEeccCCCEEEEccc
Q 021399 218 WDARTLE----LIKTY-VTERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 218 wd~~~~~----~~~~~-~~~~~~~~~~~~p~~~~~~~~~~ 252 (313)
||+++.. ....+ .+...+.+++|+|++..+++++.
T Consensus 243 w~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~ 282 (316)
T 3bg1_A 243 WTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGG 282 (316)
T ss_dssp EECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEES
T ss_pred EEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcC
Confidence 9987621 11112 24668999999999988776653
No 93
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=1.3e-29 Score=223.72 Aligned_cols=234 Identities=18% Similarity=0.277 Sum_probs=182.7
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
.+.+|...|++|+|+|+|++|++|+.|+.|+|||+++++.+.++.+|...|.+++++ ++.+++|+.|+.+++||....
T Consensus 142 ~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~ 219 (420)
T 4gga_A 142 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVA 219 (420)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeeccc
Confidence 456888899999999999999999999999999999999999999999999998875 569999999999999998764
Q ss_pred e-EEEEe-cCCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC-E
Q 021399 85 A-QLFTF-NFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-T 160 (313)
Q Consensus 85 ~-~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~ 160 (313)
. .+..+ .+...+..+.+.+.+..++. ..+.. +.+++.... ......+.....|.+.|..+.|+|.+. .
T Consensus 220 ~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~------v~i~~~~~~--~~~~~~~~~~~~~~~~V~~~~~~p~~~~~ 291 (420)
T 4gga_A 220 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL------VNVWPSAPG--EGGWVPLQTFTQHQGAVKAVAWCPWQSNV 291 (420)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC------EEEEESSCC--SSCSCCSEEECCCSSCEEEEEECTTCTTE
T ss_pred ceeeEEecccccceeeeeecCCCCeeeeeecccc------ceEEeeccc--cccceeeeeecccCCceeeeeeCCCcccE
Confidence 4 33333 34566777778876554443 33332 223322211 111223455677889999999999765 4
Q ss_pred EEE--eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee--CCCcEEEEECCCCcEEEEEe-cCCce
Q 021399 161 IIS--AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYV-TERPV 235 (313)
Q Consensus 161 i~t--~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~-~~~~~ 235 (313)
+++ |+.|+.|++||+.+++++..+. +...+.++.|+++++.+++++ .|+.|++||+++++++.++. +...|
T Consensus 292 la~~~gs~D~~I~iwd~~t~~~~~~~~----~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V 367 (420)
T 4gga_A 292 LATGGGTSDRHIRIWNVCSGACLSAVD----AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV 367 (420)
T ss_dssp EEEEECTTTCEEEEEETTTTEEEEEEE----CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCE
T ss_pred EEEEeecCCCEEEEEeCCccccceeec----cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence 444 4579999999999998876654 346789999999999988765 79999999999999999986 56789
Q ss_pred eEEEeccCCCEEEEccc
Q 021399 236 NAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 236 ~~~~~~p~~~~~~~~~~ 252 (313)
.+++|+|++..+++++.
T Consensus 368 ~~l~~spdg~~l~S~s~ 384 (420)
T 4gga_A 368 LSLTMSPDGATVASAAA 384 (420)
T ss_dssp EEEEECTTSSCEEEEET
T ss_pred EEEEEcCCCCEEEEEec
Confidence 99999999998776543
No 94
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.98 E-value=2.1e-30 Score=223.45 Aligned_cols=241 Identities=14% Similarity=0.121 Sum_probs=182.7
Q ss_pred cccceeEEEEccC----CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCC
Q 021399 9 HERPLTYLKYNKD----GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 9 h~~~v~~~~fs~~----g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~ 83 (313)
|...|.+++|+|+ |++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.|++|++||+++
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~ 147 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeec
Confidence 6678999999999 67999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CeEEEEe----cCCCCeeEEEeecCCeEEEE-ECCCceeccccceee---eee----eCCC---------CCCCceEEEe
Q 021399 84 GAQLFTF----NFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVK---RIA----RDPA---------DQGGESVLIL 142 (313)
Q Consensus 84 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~----~~~~---------~~~~~~~~~~ 142 (313)
++.+..+ .+...+..+.|++++..++. ..+....++...... .+. ..+. ..........
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 148 DTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp TEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred CeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 9888776 35678899999986654444 444333221111000 000 0000 0001112344
Q ss_pred cCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCcee-----------eecccccCceeceEEEEECCC--CCEEEEe
Q 021399 143 KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL-----------KESDKETGHKKTITSLAKAAD--GSHFLTG 209 (313)
Q Consensus 143 ~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~-----------~~~~~~~~h~~~v~~~~~s~~--~~~l~s~ 209 (313)
.+|...|.++.|+ ++++++++.|+.|++||+.+.... ..+.....|...|.+++|+|+ +.+|++|
T Consensus 228 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~ 305 (366)
T 3k26_A 228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALG 305 (366)
T ss_dssp SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEE
T ss_pred cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEE
Confidence 5688899999998 679999999999999998775430 111122357788999999999 9999999
Q ss_pred eCCCcEEEEECCCCcE----EEEEec---CCceeEEEeccCCCEEEEcc
Q 021399 210 SLDKSAKLWDARTLEL----IKTYVT---ERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 210 s~dg~i~iwd~~~~~~----~~~~~~---~~~~~~~~~~p~~~~~~~~~ 251 (313)
+.||.|++||++++++ ...+.. ...+.+++|+|++..+++++
T Consensus 306 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 354 (366)
T 3k26_A 306 NQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVC 354 (366)
T ss_dssp CTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred ecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEe
Confidence 9999999999998753 334443 46899999999998877654
No 95
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.98 E-value=1.4e-30 Score=223.92 Aligned_cols=236 Identities=14% Similarity=0.237 Sum_probs=180.7
Q ss_pred ccccccceeEEEEccC---CCEEEEeeCCCCeEEEeCCCCc-EEEEecCCCCceEEEE------ECCCCCeEEEeeCCCc
Q 021399 6 MKGHERPLTYLKYNKD---GDLLFSCAKDHTPTVWFADNGE-RLGTYRGHNGAVWCCD------VSRDSMTLITGSADQT 75 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~---g~~l~s~s~d~~i~iw~~~~~~-~~~~~~~H~~~V~~~~------~~~~~~~l~s~s~D~~ 75 (313)
..+|..+|.+++|+|+ +++|++|+.|+.|++||+.+++ .+..+.+|.+.|.+++ |+|+++.|++++.|++
T Consensus 61 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~ 140 (357)
T 3i2n_A 61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGT 140 (357)
T ss_dssp EEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSC
T ss_pred eecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCe
Confidence 4479999999999999 7999999999999999999988 8889999999999995 5788999999999999
Q ss_pred EEEEECCCCe-EEEEecC-----CCCeeEEE----eecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecC
Q 021399 76 AKLWNVETGA-QLFTFNF-----DSPARSVD----FAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKG 144 (313)
Q Consensus 76 v~vWd~~~~~-~~~~~~~-----~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (313)
|++||+.+++ .+..+.. ...+..+. |.+++..++.. .+. .+.++++. .. .......
T Consensus 141 i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~------~i~i~d~~------~~-~~~~~~~ 207 (357)
T 3i2n_A 141 VKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNG------DIKLFDLR------NM-ALRWETN 207 (357)
T ss_dssp EEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTS------EEEEEETT------TT-EEEEEEE
T ss_pred EEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCC------eEEEEECc------cC-ceeeecC
Confidence 9999998876 4444432 22566666 44555544443 332 22333321 11 2234456
Q ss_pred CCCceEEEEEcc---CCCEEEEeeCCCeEEEEECCCCceeeecc--cccCceeceEEEEECCCCC-EEEEeeCCCcEEEE
Q 021399 145 PQGRINRAVWGP---LNRTIISAGEDAIVRIWDTETGKLLKESD--KETGHKKTITSLAKAADGS-HFLTGSLDKSAKLW 218 (313)
Q Consensus 145 ~~~~i~~~~~~~---~~~~i~t~~~d~~i~lwd~~~~~~~~~~~--~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iw 218 (313)
|...+..+.|+| +++.+++++.|+.|++||+++++.+..+. ...+|...|++++|+|++. +|++++.||.|++|
T Consensus 208 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 287 (357)
T 3i2n_A 208 IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW 287 (357)
T ss_dssp CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence 788999999999 89999999999999999988765433321 1236889999999999998 89999999999999
Q ss_pred ECCCC-------------------cEEEEEe-cCCceeEEEeccCCCEEEEccccc
Q 021399 219 DARTL-------------------ELIKTYV-TERPVNAVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 219 d~~~~-------------------~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~ 254 (313)
|++++ +++..+. +...+.+++|+|++..++++++.|
T Consensus 288 d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d 343 (357)
T 3i2n_A 288 KYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFD 343 (357)
T ss_dssp EEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETT
T ss_pred ecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCC
Confidence 98864 2444444 466899999999999888655544
No 96
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.97 E-value=9.5e-30 Score=220.06 Aligned_cols=209 Identities=14% Similarity=0.156 Sum_probs=168.8
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEE--ecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGT--YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~--~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.... +..|...|.+++|+|+++++++++.|+.|++||+
T Consensus 46 ~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~ 125 (372)
T 1k8k_C 46 HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 125 (372)
T ss_dssp EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEE
T ss_pred eeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEe
Confidence 35778999999999999999999999999999999988875443 4779999999999999999999999999999999
Q ss_pred CCCeE---EEEe--cCCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeC------------CCCCCCceEEEec
Q 021399 82 ETGAQ---LFTF--NFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARD------------PADQGGESVLILK 143 (313)
Q Consensus 82 ~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 143 (313)
+.++. .... .+...+..+.|.+++..++.. .+.. +.++++... .....+..+..+.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~------i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (372)
T 1k8k_C 126 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFK------CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS 199 (372)
T ss_dssp ETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSC------EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC
T ss_pred cCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCC------EEEEEcccccccccccccccccccchhhheEecC
Confidence 87652 2222 235678899999876655443 3332 333332110 0012345677778
Q ss_pred CCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399 144 GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (313)
Q Consensus 144 ~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (313)
+|...+.++.|+|+++++++++.|+.|++||+.+++++..+. .|...+.+++|+|++.++++| .|+.|++||+++
T Consensus 200 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 200 SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA---SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE---CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc---cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 899999999999999999999999999999999888776654 578899999999999988877 899999999987
No 97
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=6.2e-29 Score=217.96 Aligned_cols=227 Identities=16% Similarity=0.257 Sum_probs=183.3
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC-CeE
Q 021399 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQ 86 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~-~~~ 86 (313)
.|...|.+++|+|++++|++|+.||.|++||+.+++.+.++.+|...|.+++|+ ++.+++++.|+.|++||++. ...
T Consensus 132 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~ 209 (401)
T 4aez_A 132 DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQ 209 (401)
T ss_dssp CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcce
Confidence 388899999999999999999999999999999999999999999999999994 56999999999999999984 444
Q ss_pred EEEe-cCCCCeeEEEeecCCeEEEEE-CCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC-EEEE
Q 021399 87 LFTF-NFDSPARSVDFAVGDKLAVIT-TDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TIIS 163 (313)
Q Consensus 87 ~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~i~t 163 (313)
+..+ .+...+..+.|++++..++.. .+. .+.++++. ....+..+..|...|..+.|+|.+. .+++
T Consensus 210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~------~v~iwd~~------~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~ 277 (401)
T 4aez_A 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDN------VVQIWDAR------SSIPKFTKTNHNAAVKAVAWCPWQSNLLAT 277 (401)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEETTS------CEEEEETT------CSSEEEEECCCSSCCCEEEECTTSTTEEEE
T ss_pred eeEEcCCCCCeeEEEEcCCCCEEEEEeCCC------eEEEccCC------CCCccEEecCCcceEEEEEECCCCCCEEEE
Confidence 4444 356788899999876555443 333 23334332 2455667788999999999999764 5556
Q ss_pred ee--CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEE--eeCCCcEEEEECCCCcEEEEE--e-cCCcee
Q 021399 164 AG--EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT--GSLDKSAKLWDARTLELIKTY--V-TERPVN 236 (313)
Q Consensus 164 ~~--~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s--~s~dg~i~iwd~~~~~~~~~~--~-~~~~~~ 236 (313)
++ .|+.|++||+.+++++..+. +...+.+++|+|++.++++ |+.||.|++||+++++..... . +...+.
T Consensus 278 ~~gs~d~~i~i~d~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~ 353 (401)
T 4aez_A 278 GGGTMDKQIHFWNAATGARVNTVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVL 353 (401)
T ss_dssp ECCTTTCEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCC
T ss_pred ecCCCCCEEEEEECCCCCEEEEEe----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEE
Confidence 54 79999999999988877653 5678999999999999999 558999999999987655443 2 456799
Q ss_pred EEEeccCCCEEEEccc
Q 021399 237 AVTMSPLLDHVVLGGG 252 (313)
Q Consensus 237 ~~~~~p~~~~~~~~~~ 252 (313)
+++|+|++..+++++.
T Consensus 354 ~~~~s~dg~~l~s~~~ 369 (401)
T 4aez_A 354 YSALSPDGRILSTAAS 369 (401)
T ss_dssp EEEECTTSSEEEEECT
T ss_pred EEEECCCCCEEEEEeC
Confidence 9999999998777654
No 98
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-28 Score=211.48 Aligned_cols=233 Identities=15% Similarity=0.173 Sum_probs=190.4
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC-----CcEEE
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKL 78 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~v~v 78 (313)
..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. |...|.+++|+|+++.+++++.+ +.|++
T Consensus 68 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~ 146 (369)
T 3zwl_B 68 GTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINI 146 (369)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEE
T ss_pred hhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEE
Confidence 3678899999999999999999999999999999999999998888 88999999999999999999999 99999
Q ss_pred EECCCCeEE-----------E-EecCCC--CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC
Q 021399 79 WNVETGAQL-----------F-TFNFDS--PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG 144 (313)
Q Consensus 79 Wd~~~~~~~-----------~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (313)
||+...... . ...... .+..+.|.+++..++.... ++.+.++++. .....+..+..
T Consensus 147 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~i~i~d~~-----~~~~~~~~~~~ 216 (369)
T 3zwl_B 147 YEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHK-----DGKISKYDVS-----NNYEYVDSIDL 216 (369)
T ss_dssp EEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEET-----TSEEEEEETT-----TTTEEEEEEEC
T ss_pred EEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcC-----CCEEEEEECC-----CCcEeEEEEec
Confidence 998654311 1 111222 6778888886655444322 1223333321 11456677788
Q ss_pred CCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC-----------
Q 021399 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK----------- 213 (313)
Q Consensus 145 ~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg----------- 213 (313)
|...|.++.|+|++++|++++.|+.|++||+.+++.+..+. +...+.+++|+|++.++++++.++
T Consensus 217 ~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 292 (369)
T 3zwl_B 217 HEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANE 292 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE----CSSCEEEEEECSSSSEEEEEECCC-----------
T ss_pred CCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec----CCCCceeEEecCCCceEEEeecCCCceEEEEecCC
Confidence 99999999999999999999999999999999988776654 567899999999999999999998
Q ss_pred ---cEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcc
Q 021399 214 ---SAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 214 ---~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~ 251 (313)
.+++||.++++++..+. +...+.+++|+|++..+++++
T Consensus 293 ~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~ 334 (369)
T 3zwl_B 293 GKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGG 334 (369)
T ss_dssp --CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred CcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEc
Confidence 89999999999988886 467899999999998777654
No 99
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-28 Score=206.94 Aligned_cols=222 Identities=18% Similarity=0.302 Sum_probs=179.6
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC---cEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG---ERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~---~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd 80 (313)
..+..|...|.+++|+|++++|++++.|+.+++|++.+. +.+..+.+|...|.+++| +++.+++++.|+.|++||
T Consensus 53 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d 130 (313)
T 3odt_A 53 TVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK 130 (313)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE
T ss_pred EEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc
Confidence 456789999999999999999999999999999998765 567788999999999999 567999999999999999
Q ss_pred CCCCeEEEEec-CCCCeeEEEeec--CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC-CCCceEEEEEcc
Q 021399 81 VETGAQLFTFN-FDSPARSVDFAV--GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG-PQGRINRAVWGP 156 (313)
Q Consensus 81 ~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~ 156 (313)
.++....+. ...++..+.+.+ +..++....+... .+++ .......+.. |...+..+.|+|
T Consensus 131 --~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i------~i~d--------~~~~~~~~~~~~~~~i~~~~~~~ 194 (313)
T 3odt_A 131 --EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTI------KLWQ--------NDKVIKTFSGIHNDVVRHLAVVD 194 (313)
T ss_dssp --TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCE------EEEE--------TTEEEEEECSSCSSCEEEEEEEE
T ss_pred --CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCE------EEEe--------cCceEEEEeccCcccEEEEEEcC
Confidence 445554443 466777888776 4445444444332 2332 1234455555 888999999999
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCce
Q 021399 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPV 235 (313)
Q Consensus 157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~ 235 (313)
++. +++++.|+.|++||+.+++.+..+. +|...+++++|+|++ .|++++.||.|++||+++++++..+.. ...+
T Consensus 195 ~~~-~~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i 269 (313)
T 3odt_A 195 DGH-FISCSNDGLIKLVDMHTGDVLRTYE---GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISI 269 (313)
T ss_dssp TTE-EEEEETTSEEEEEETTTCCEEEEEE---CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCE
T ss_pred CCe-EEEccCCCeEEEEECCchhhhhhhh---cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceE
Confidence 988 9999999999999999988776654 588999999999999 699999999999999999999888864 4589
Q ss_pred eEEEeccCCCEEEE
Q 021399 236 NAVTMSPLLDHVVL 249 (313)
Q Consensus 236 ~~~~~~p~~~~~~~ 249 (313)
.+++|+|++. +++
T Consensus 270 ~~~~~~~~~~-~~~ 282 (313)
T 3odt_A 270 WSVDCMSNGD-IIV 282 (313)
T ss_dssp EEEEECTTSC-EEE
T ss_pred EEEEEccCCC-EEE
Confidence 9999999987 444
No 100
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=2.9e-29 Score=220.00 Aligned_cols=239 Identities=18% Similarity=0.204 Sum_probs=181.0
Q ss_pred ceeEEEEccCCCEE-EEeeCCCCeEEEeCCCCc----EEEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCCCe
Q 021399 12 PLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGE----RLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGA 85 (313)
Q Consensus 12 ~v~~~~fs~~g~~l-~s~s~d~~i~iw~~~~~~----~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~~~ 85 (313)
....++++|+...+ ++++.||.|+||++.... .+..+.+|.+.|.+++|+| ++++|++|+.||+|++||+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 34568889887644 457899999999986642 3456789999999999999 89999999999999999998753
Q ss_pred EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC-CEEEEe
Q 021399 86 QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN-RTIISA 164 (313)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~i~t~ 164 (313)
... .....+..+.+|...|.++.|+|++ +.++++
T Consensus 116 ~~~---------------------------------------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 150 (402)
T 2aq5_A 116 LVL---------------------------------------------PLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150 (402)
T ss_dssp CSS---------------------------------------------CBCSCSEEEECCSSCEEEEEECSSBTTEEEEE
T ss_pred Ccc---------------------------------------------ccCCceEEecCCCCeEEEEEECcCCCCEEEEE
Confidence 210 0001234556788999999999998 699999
Q ss_pred eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE-ec-CC-ceeEEEec
Q 021399 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-VT-ER-PVNAVTMS 241 (313)
Q Consensus 165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~-~~-~~~~~~~~ 241 (313)
+.|+.|++||+.+++.+..+. ..+|...|.+++|+|++++|++++.|+.|++||+++++++..+ .. .. .+..++|+
T Consensus 151 ~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (402)
T 2aq5_A 151 GCDNVILVWDVGTGAAVLTLG-PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV 229 (402)
T ss_dssp ETTSCEEEEETTTTEEEEEEC-TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC
T ss_pred cCCCEEEEEECCCCCccEEEe-cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc
Confidence 999999999999988776552 1358899999999999999999999999999999999998887 32 22 37899999
Q ss_pred cCCCEEEEccc-ccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 242 PLLDHVVLGGG-QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 242 p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
|++..++++.. ..+..+.+||.+........ ....|...|.+++|+|||+.++..
T Consensus 230 ~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~----------~~~~~~~~v~~~~~s~~~~~l~~~ 285 (402)
T 2aq5_A 230 SEGKILTTGFSRMSERQVALWDTKHLEEPLSL----------QELDTSSGVLLPFFDPDTNIVYLC 285 (402)
T ss_dssp STTEEEEEEECTTCCEEEEEEETTBCSSCSEE----------EECCCCSSCEEEEEETTTTEEEEE
T ss_pred CCCcEEEEeccCCCCceEEEEcCccccCCceE----------EeccCCCceeEEEEcCCCCEEEEE
Confidence 98776555421 22334444444332211111 112477889999999999987654
No 101
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=4.2e-29 Score=215.28 Aligned_cols=238 Identities=15% Similarity=0.183 Sum_probs=176.5
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEE--CCCCCeEEEeeCCCcEEEEEC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV--SRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~--~~~~~~l~s~s~D~~v~vWd~ 81 (313)
..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+. +.+|...|.+++| +|++++|++++.|++|++||+
T Consensus 80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 4678999999999999999999999999999999999988765 6679999999999 899999999999999999999
Q ss_pred CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe-cCCCCceEEEEEccCCCE
Q 021399 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~ 160 (313)
++++.+..+........+.+... .+++...+.. +.++++.. ........ ..+......+.+.+....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (368)
T 3mmy_A 159 RSSNPMMVLQLPERCYCADVIYP-MAVVATAERG------LIVYQLEN-----QPSEFRRIESPLKHQHRCVAIFKDKQN 226 (368)
T ss_dssp SCSSCSEEEECSSCEEEEEEETT-EEEEEEGGGC------EEEEECSS-----SCEEEEECCCSCSSCEEEEEEEECTTS
T ss_pred CCCcEEEEEecCCCceEEEecCC-eeEEEeCCCc------EEEEEecc-----ccchhhhccccccCCCceEEEcccCCC
Confidence 99887777766555555555543 3333333222 22222211 01111111 112233444444444333
Q ss_pred ----EEEeeCCCeEEEEECCCCceeeecccccCcee------------ceEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Q 021399 161 ----IISAGEDAIVRIWDTETGKLLKESDKETGHKK------------TITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (313)
Q Consensus 161 ----i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~------------~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~ 224 (313)
+++++.|+.|++||+.............+|.. .|++++|+|++++|++++.||.|++||+++++
T Consensus 227 ~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~ 306 (368)
T 3mmy_A 227 KPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDART 306 (368)
T ss_dssp CEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred CCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCc
Confidence 99999999999999987632111111123444 79999999999999999999999999999999
Q ss_pred EEEEEe-cCCceeEEEeccCCCEEEEccccc
Q 021399 225 LIKTYV-TERPVNAVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 225 ~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~ 254 (313)
++..+. +...+.+++|+|++..++++++++
T Consensus 307 ~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~ 337 (368)
T 3mmy_A 307 KLKTSEQLDQPISACCFNHNGNIFAYASSYD 337 (368)
T ss_dssp EEEECCCCSSCEEEEEECTTSSCEEEEECCC
T ss_pred EEEEecCCCCCceEEEECCCCCeEEEEeccc
Confidence 988876 467899999999999988876644
No 102
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.7e-30 Score=229.38 Aligned_cols=252 Identities=12% Similarity=0.099 Sum_probs=181.4
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~ 87 (313)
.-...|.+++|||||+++||+|.|++|+ |.+.++ .+++|.+.|++++|+|+| .++++++|+.+... .
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~-~ 79 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG-L 79 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC-S
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce-E
Confidence 3456799999999999999999999999 755554 457999999999999987 57777776644222 2
Q ss_pred EEecCCCCeeEEEeecCCeE-EEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC-----ceEEEEEccCCCEE
Q 021399 88 FTFNFDSPARSVDFAVGDKL-AVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG-----RINRAVWGPLNRTI 161 (313)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~i 161 (313)
........+..+.|+|+++. ++++.++...+ |+. ...+..+. |.. .+.+++|+|+|+++
T Consensus 80 ~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~i------wd~--------~~~l~~l~-~~~~~~~~sv~svafSPDG~~L 144 (588)
T 2j04_A 80 LNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSV------FKD--------NKMLTNLD-SKGNLSSRTYHCFEWNPIESSI 144 (588)
T ss_dssp STTSCSCCEEEEEECSSSSCEEEEETTSCEEE------EET--------TEEEEECC-CSSCSTTTCEEEEEECSSSSCE
T ss_pred eecCCCCcEEEEEECCCCCEEEEEeCCCcEEE------EeC--------Cceeeecc-CCCccccccEEEEEEcCCCCEE
Confidence 22223567888899997764 44444443332 221 01333344 554 48999999999999
Q ss_pred EEeeCCCeEEEEECCCCce-------eeecc-cccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE---EEEEe
Q 021399 162 ISAGEDAIVRIWDTETGKL-------LKESD-KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL---IKTYV 230 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~-------~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~ 230 (313)
++|+.||+|+|||+..+.. +.++. ...+|...|.+++|+||| +++++.|++|++||+.+++. ..++.
T Consensus 145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~ 222 (588)
T 2j04_A 145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ 222 (588)
T ss_dssp EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence 9999999999999988752 33321 124688999999999999 88999999999999988773 34553
Q ss_pred --cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEE--CCCCCeeEEE
Q 021399 231 --TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF--NPDGKRYGFL 306 (313)
Q Consensus 231 --~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~f--spdgk~~~~~ 306 (313)
+...|.+++|+ ++.+++++ + . .+++||...++......+|.+.|++++| +||++.++.-
T Consensus 223 ~~h~~~V~svaFs--g~~LASa~-~--~------------tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a 285 (588)
T 2j04_A 223 NASRRKITDLKIV--DYKVVLTC-P--G------------YVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMS 285 (588)
T ss_dssp CCCSSCCCCEEEE--TTEEEEEC-S--S------------EEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEEC
T ss_pred ccccCcEEEEEEE--CCEEEEEe-C--C------------eEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEE
Confidence 34579999999 56555553 2 2 3456665544432223379999999999 9999887653
No 103
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.9e-30 Score=219.84 Aligned_cols=225 Identities=9% Similarity=-0.043 Sum_probs=167.7
Q ss_pred EEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCe
Q 021399 17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPA 96 (313)
Q Consensus 17 ~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~ 96 (313)
.+.+++.+|++|+.||.|++||+.+++.+.++. .+.|.++.++|+ +++++.|++|++|+......+....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~----- 112 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSK----- 112 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETT-----
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecC-----
Confidence 345678999999999999999999999888877 567888889887 9999999999999987532211110
Q ss_pred eEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE-ecCCCCceEEEEEcc--CCCEEEEeeCCCeEEEE
Q 021399 97 RSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRAVWGP--LNRTIISAGEDAIVRIW 173 (313)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~--~~~~i~t~~~d~~i~lw 173 (313)
....+.. ..+|.+.|.++.|+| +++++++++.|+.|++|
T Consensus 113 --------------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~w 154 (343)
T 3lrv_A 113 --------------------------------------TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQ 154 (343)
T ss_dssp --------------------------------------TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEE
T ss_pred --------------------------------------CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEE
Confidence 0111111 125667899999999 99999999999999999
Q ss_pred ECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE-EEEe--cCCceeEEEeccCCCEEEEc
Q 021399 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI-KTYV--TERPVNAVTMSPLLDHVVLG 250 (313)
Q Consensus 174 d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~--~~~~~~~~~~~p~~~~~~~~ 250 (313)
|+++++.+.... ..|...+++++|+|++.+|++|+.||.|++||+++++++ ..+. +..++.+++|+|++..++++
T Consensus 155 d~~~~~~~~~~~--~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~ 232 (343)
T 3lrv_A 155 SYEDDSQYIVHS--AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVE 232 (343)
T ss_dssp ESSSSCEEEEEC--CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEE
T ss_pred ECCCCcEEEEEe--cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEE
Confidence 999888755432 235567999999999999999999999999999999877 5564 46789999999999887776
Q ss_pred ccccCceeEeeccCCCceeeeeeehhhhhhhcccc---cccccee--EEEECCCCCeeEEE
Q 021399 251 GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK---GHFGPIN--ALAFNPDGKRYGFL 306 (313)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~V~--~~~fspdgk~~~~~ 306 (313)
+ ++ .+.+||.+ ..+.+..+. .|..++. +++|+|+|++++..
T Consensus 233 ~-~~--~v~iwd~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 278 (343)
T 3lrv_A 233 C-DQ--TVVCFDLR------------KDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAY 278 (343)
T ss_dssp E-SS--BEEEEETT------------SSTTCBSSCCCBC-----CCEEEEECTTSSEEEEE
T ss_pred e-CC--eEEEEEcC------------CCCcceeecccccccccccceEEEECCCCCEEEEe
Confidence 5 32 45555544 333332222 2445554 69999999998864
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.8e-29 Score=214.59 Aligned_cols=209 Identities=20% Similarity=0.327 Sum_probs=167.4
Q ss_pred ccccccccceeEEEEccC--CCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEE
Q 021399 4 ILMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAK 77 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~--g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~ 77 (313)
..+.+|...|.+++|+++ +++|++++.|+.|++||+.+++ .+..+.+|...|.+++|+|+ ++++++++.|++|+
T Consensus 49 ~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~ 128 (379)
T 3jrp_A 49 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 128 (379)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred eEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEE
Confidence 367899999999999987 9999999999999999999987 77888999999999999999 89999999999999
Q ss_pred EEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc-
Q 021399 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP- 156 (313)
Q Consensus 78 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 156 (313)
+||+.++... ....+..|...|.++.|+|
T Consensus 129 v~d~~~~~~~--------------------------------------------------~~~~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 129 VVEFKENGTT--------------------------------------------------SPIIIDAHAIGVNSASWAPA 158 (379)
T ss_dssp EEECCTTSCC--------------------------------------------------CEEEEECCTTCEEEEEECCC
T ss_pred EEecCCCCce--------------------------------------------------eeEEecCCCCceEEEEEcCc
Confidence 9998765311 0112234566777888887
Q ss_pred ------------CCCEEEEeeCCCeEEEEECCCCceee-ecccccCceeceEEEEECCC---CCEEEEeeCCCcEEEEEC
Q 021399 157 ------------LNRTIISAGEDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLWDA 220 (313)
Q Consensus 157 ------------~~~~i~t~~~d~~i~lwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~~---~~~l~s~s~dg~i~iwd~ 220 (313)
++..+++++.|+.|++||++++.... ......+|...|.+++|+|+ +.+|++++.||.|++||+
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp C----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 68999999999999999987654321 11223468899999999999 899999999999999999
Q ss_pred CCCc---EEEEEe---cCCceeEEEeccCCCEEEEcccccCceeEeeccC
Q 021399 221 RTLE---LIKTYV---TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR 264 (313)
Q Consensus 221 ~~~~---~~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 264 (313)
+++. ....+. +...+.+++|+|++..+++++. ++.+.+|+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~iw~~~ 286 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG--DNKVTLWKEN 286 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES--SSSEEEEEEE
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC--CCcEEEEeCC
Confidence 9864 222221 4567899999999998877654 3345566543
No 105
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=2.4e-28 Score=212.63 Aligned_cols=231 Identities=14% Similarity=0.193 Sum_probs=176.2
Q ss_pred cccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEecCC---CCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGH---NGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 7 ~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H---~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
.+|...|.+++|+| ++++|++++.|+.|++||+.+ ..+..+..| ...|.+++|+|+++.|++|+.|+.|++||++
T Consensus 115 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~ 193 (383)
T 3ei3_B 115 MGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD 193 (383)
T ss_dssp CSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred CCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC
Confidence 47999999999999 789999999999999999986 555566544 4889999999999999999999999999995
Q ss_pred CCeEEEEe-cCCCCeeEEEeecCCe--EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc-CC
Q 021399 83 TGAQLFTF-NFDSPARSVDFAVGDK--LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP-LN 158 (313)
Q Consensus 83 ~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~ 158 (313)
++.+..+ .+...+..+.|.+++. ++.+..+. .+.++++.... .....+..+ +|...+.++.|+| ++
T Consensus 194 -~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~--~~~~~~~~~-~~~~~v~~~~~s~~~~ 263 (383)
T 3ei3_B 194 -GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDA------TVKLWDLRNIK--DKNSYIAEM-PHEKPVNAAYFNPTDS 263 (383)
T ss_dssp -SCEEEEEECSSSCEEEEEECSSCTTEEEEEETTS------EEEEEEGGGCC--STTCEEEEE-ECSSCEEEEEECTTTS
T ss_pred -CCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCC------EEEEEeCCCCC--cccceEEEe-cCCCceEEEEEcCCCC
Confidence 4555444 4567899999999765 44444443 23344433211 112233333 6889999999999 99
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecccc----cCce----------eceEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKE----TGHK----------KTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~----~~h~----------~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~ 224 (313)
++|++++.|+.|++||+.+++.+..+... ..|. ..+..++++|++.+ +++.|+.|++||+++++
T Consensus 264 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~ 341 (383)
T 3ei3_B 264 TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGG 341 (383)
T ss_dssp CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCC
T ss_pred CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCc
Confidence 99999999999999999887665443311 1122 34555777788776 88899999999999999
Q ss_pred EEEEEec---CCceeEEEeccCCCEEEEc
Q 021399 225 LIKTYVT---ERPVNAVTMSPLLDHVVLG 250 (313)
Q Consensus 225 ~~~~~~~---~~~~~~~~~~p~~~~~~~~ 250 (313)
++..+.. ...+..++|+|++..++++
T Consensus 342 ~~~~l~~~~~~~~~~~~~~s~~g~~l~s~ 370 (383)
T 3ei3_B 342 LVHQLRDPNAAGIISLNKFSPTGDVLASG 370 (383)
T ss_dssp EEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred eeeeecCCCCCceEEEEEEecCccEEEEe
Confidence 9988863 4457778999999987666
No 106
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=8.7e-29 Score=211.69 Aligned_cols=236 Identities=11% Similarity=0.034 Sum_probs=185.2
Q ss_pred cccccccccceeEEEEccCCC-EEEEeeCCCCeEEEeC-CCCcEEEEecC--CCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399 3 PILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFA-DNGERLGTYRG--HNGAVWCCDVSRDSMTLITGSADQTAKL 78 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~-~~~~~~~~~~~--H~~~V~~~~~~~~~~~l~s~s~D~~v~v 78 (313)
++.+.+|...|.+++|+|+++ +|++|+.|+.|++||+ .+++. ..+.+ |...|.+++|+| ++.+++++.|+.|++
T Consensus 49 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~i 126 (342)
T 1yfq_A 49 LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEV 126 (342)
T ss_dssp EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEE
T ss_pred ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEE
Confidence 456678999999999999999 9999999999999999 77765 67888 999999999999 999999999999999
Q ss_pred EECCC---------CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCce
Q 021399 79 WNVET---------GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI 149 (313)
Q Consensus 79 Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 149 (313)
||+++ ++.+..+.....+..+.+.++. ++++..+.. +.++++... ...........|...+
T Consensus 127 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-l~~~~~d~~------i~i~d~~~~---~~~~~~~~~~~~~~~i 196 (342)
T 1yfq_A 127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR-LIVGMNNSQ------VQWFRLPLC---EDDNGTIEESGLKYQI 196 (342)
T ss_dssp ECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE-EEEEESTTE------EEEEESSCC---TTCCCEEEECSCSSCE
T ss_pred EcccccccccccccCCeeeEEeeCCceEEEEecCCc-EEEEeCCCe------EEEEECCcc---ccccceeeecCCCCce
Confidence 99986 5555445566678888888766 555444432 333333210 1111233445677889
Q ss_pred EEEEEcc-CCCEEEEeeCCCeEEEEECCCC------ceeeeccccc------CceeceEEEEECCCCCEEEEeeCCCcEE
Q 021399 150 NRAVWGP-LNRTIISAGEDAIVRIWDTETG------KLLKESDKET------GHKKTITSLAKAADGSHFLTGSLDKSAK 216 (313)
Q Consensus 150 ~~~~~~~-~~~~i~t~~~d~~i~lwd~~~~------~~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~s~dg~i~ 216 (313)
.++.|+| +++++++++.|+.|++||.... +....+.... +|...|.+++|+|++++|++++.||.|+
T Consensus 197 ~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~ 276 (342)
T 1yfq_A 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS 276 (342)
T ss_dssp EEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEE
T ss_pred eEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEE
Confidence 9999999 9999999999999999999765 4443332111 2344999999999999999999999999
Q ss_pred EEECCCCcEEEEEec--CCceeEEEeccCCCEEEEccc
Q 021399 217 LWDARTLELIKTYVT--ERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 217 iwd~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~ 252 (313)
+||+++++++..+.. ..++.+++ |++..+++++.
T Consensus 277 vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~ 312 (342)
T 1yfq_A 277 CWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATS 312 (342)
T ss_dssp EEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEE
T ss_pred EEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEec
Confidence 999999999888863 66788888 88887766543
No 107
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=8.8e-29 Score=211.26 Aligned_cols=215 Identities=17% Similarity=0.272 Sum_probs=165.3
Q ss_pred cccccccceeEEEEcc--CCCEEEEeeCCCCeEEEeCCCC---------cEEEEecCCCCceEEEEECCC--CCeEEEee
Q 021399 5 LMKGHERPLTYLKYNK--DGDLLFSCAKDHTPTVWFADNG---------ERLGTYRGHNGAVWCCDVSRD--SMTLITGS 71 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~--~g~~l~s~s~d~~i~iw~~~~~---------~~~~~~~~H~~~V~~~~~~~~--~~~l~s~s 71 (313)
.+.+|...|.+++|+| ++++|++++.|+.|++||+.++ +.+..+.+|.+.|.+++|+|+ ++++++++
T Consensus 52 ~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~ 131 (351)
T 3f3f_A 52 SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG 131 (351)
T ss_dssp EEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred eeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec
Confidence 4678999999999999 6999999999999999999887 567889999999999999999 99999999
Q ss_pred CCCcEEEEECCCCeEEEEe--------------cCCCCeeEEEeecC---Ce-EEEEECCCceeccccceeeeeeeCCCC
Q 021399 72 ADQTAKLWNVETGAQLFTF--------------NFDSPARSVDFAVG---DK-LAVITTDPFMELNSAIHVKRIARDPAD 133 (313)
Q Consensus 72 ~D~~v~vWd~~~~~~~~~~--------------~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (313)
.|++|++||+++++.+..+ .....+..+.|.|. .. +++...+..... .....
T Consensus 132 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~----------~~~~~ 201 (351)
T 3f3f_A 132 NDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIY----------QRGKD 201 (351)
T ss_dssp TTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEE----------EECTT
T ss_pred CCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEE----------EccCC
Confidence 9999999999876532111 12345677788774 33 333333322111 11111
Q ss_pred CCCceEEEecCCCCceEEEEEccCC----CEEEEeeCCCeEEEEECCCCce-----------------------------
Q 021399 134 QGGESVLILKGPQGRINRAVWGPLN----RTIISAGEDAIVRIWDTETGKL----------------------------- 180 (313)
Q Consensus 134 ~~~~~~~~~~~~~~~i~~~~~~~~~----~~i~t~~~d~~i~lwd~~~~~~----------------------------- 180 (313)
.....+..+.+|...|.++.|+|++ +++++++.|+.|++||+..+..
T Consensus 202 ~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (351)
T 3f3f_A 202 GKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSD 281 (351)
T ss_dssp SCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------------------------
T ss_pred CceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccc
Confidence 1123356677899999999999998 7999999999999999876411
Q ss_pred --------------eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE
Q 021399 181 --------------LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (313)
Q Consensus 181 --------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (313)
...+....+|...|++++|+|++++|++++.||.|++||+++++.+..+
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 282 SNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp ---------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred cccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 0111222468899999999999999999999999999999987655544
No 108
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.4e-28 Score=216.56 Aligned_cols=235 Identities=12% Similarity=0.217 Sum_probs=174.3
Q ss_pred cccccc------------cceeEEEEccCC--CEEEEeeCCCCeEEEeCCCCcEE-------------------------
Q 021399 5 LMKGHE------------RPLTYLKYNKDG--DLLFSCAKDHTPTVWFADNGERL------------------------- 45 (313)
Q Consensus 5 ~l~~h~------------~~v~~~~fs~~g--~~l~s~s~d~~i~iw~~~~~~~~------------------------- 45 (313)
.+.+|. +.|.+++|+|++ .+|++++.|+.|++||+.++...
T Consensus 76 ~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 155 (447)
T 3dw8_B 76 TFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVP 155 (447)
T ss_dssp EEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCC
T ss_pred ccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEec
Confidence 677888 889999999998 89999999999999998764432
Q ss_pred --------------EE-ecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC-eEEEEe--------cCCCCeeEEEe
Q 021399 46 --------------GT-YRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLFTF--------NFDSPARSVDF 101 (313)
Q Consensus 46 --------------~~-~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~-~~~~~~--------~~~~~~~~~~~ 101 (313)
.. ..+|...|.+++|+|++++|++| .|++|++||+++. +....+ .+...+.++.|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 234 (447)
T 3dw8_B 156 VFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEF 234 (447)
T ss_dssp EEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEE
T ss_pred cccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEE
Confidence 12 36899999999999999999998 7999999999843 343332 34567889999
Q ss_pred ecCC--eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC------------ceEEEEEccCCCEEEEeeCC
Q 021399 102 AVGD--KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG------------RINRAVWGPLNRTIISAGED 167 (313)
Q Consensus 102 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~i~~~~~~~~~~~i~t~~~d 167 (313)
+|++ .++.+..+.. +.++++..... ....+..+.+|.. .|.++.|+|+++++++++.
T Consensus 235 ~p~~~~~l~s~~~dg~------i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~- 305 (447)
T 3dw8_B 235 HPNSCNTFVYSSSKGT------IRLCDMRASAL--CDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY- 305 (447)
T ss_dssp CSSCTTEEEEEETTSC------EEEEETTTCSS--SCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-
T ss_pred CCCCCcEEEEEeCCCe------EEEEECcCCcc--ccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-
Confidence 9865 4444444433 33333321110 0111345566654 8999999999999999998
Q ss_pred CeEEEEECCC-CceeeecccccCceec---------------eEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE--
Q 021399 168 AIVRIWDTET-GKLLKESDKETGHKKT---------------ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY-- 229 (313)
Q Consensus 168 ~~i~lwd~~~-~~~~~~~~~~~~h~~~---------------v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-- 229 (313)
+.|++||+.+ ++++..+. +|... +..++|+|++.+|++|+.||.|++||+++++.+.-.
T Consensus 306 ~~v~iwd~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~ 382 (447)
T 3dw8_B 306 LSVKVWDLNMENRPVETYQ---VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEAS 382 (447)
T ss_dssp SEEEEEETTCCSSCSCCEE---SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECC
T ss_pred CeEEEEeCCCCccccceee---ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeec
Confidence 9999999986 66555443 34321 334899999999999999999999999998876421
Q ss_pred -------------------------------ecCCceeEEEeccCCCEEEEccc
Q 021399 230 -------------------------------VTERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 230 -------------------------------~~~~~~~~~~~~p~~~~~~~~~~ 252 (313)
.....+..++|+|+++.+++++.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~ 436 (447)
T 3dw8_B 383 RENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATT 436 (447)
T ss_dssp STTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECS
T ss_pred ccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEec
Confidence 11235778999999998877654
No 109
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=9.7e-28 Score=212.01 Aligned_cols=277 Identities=10% Similarity=0.059 Sum_probs=206.5
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE-----EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-----TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~-----~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~ 85 (313)
..+.+++|+|++.++++++.|+.|++||..+++.+. .+.+|.+.|.+++|+++++++++++.|+.|++||+++++
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~ 202 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA 202 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence 346689999988888888899999999999998877 456899999999999999999999999999999999988
Q ss_pred EEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 86 QLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
.+..+. ....+..+.|.+++..+++.... ...+..+++. .+..+..+.. ...+..+.|+|+++.++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~i~~~d~~------~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~ 271 (433)
T 3bws_A 203 YKATVDLTGKWSKILLYDPIRDLVYCSNWI----SEDISVIDRK------TKLEIRKTDK-IGLPRGLLLSKDGKELYIA 271 (433)
T ss_dssp EEEEEECSSSSEEEEEEETTTTEEEEEETT----TTEEEEEETT------TTEEEEECCC-CSEEEEEEECTTSSEEEEE
T ss_pred EEEEEcCCCCCeeEEEEcCCCCEEEEEecC----CCcEEEEECC------CCcEEEEecC-CCCceEEEEcCCCCEEEEE
Confidence 777665 45577888999876655333210 1122222221 2233334443 3458899999999999988
Q ss_pred e--------CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEE-EEeeCCCcEEEEECCCCcEEEEEecCCce
Q 021399 165 G--------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELIKTYVTERPV 235 (313)
Q Consensus 165 ~--------~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~ 235 (313)
+ .|+.|++||+.+++.+... .|...+.+++|+|+++.+ ++++.|+.|++||+++++++..+.....+
T Consensus 272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~ 347 (433)
T 3bws_A 272 QFSASNQESGGGRLGIYSMDKEKLIDTI----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKP 347 (433)
T ss_dssp EEESCTTCSCCEEEEEEETTTTEEEEEE----EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred ECCCCccccCCCeEEEEECCCCcEEeec----cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCC
Confidence 8 5889999999988766554 366788999999999754 66689999999999999998888777789
Q ss_pred eEEEeccCCCEEEEcccccCce----eEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 236 NAVTMSPLLDHVVLGGGQDASA----VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 236 ~~~~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
..++|+|++..++++....... ++. .. ....+++||..+++.+..+.+ ...+.+++|+|||+.++..
T Consensus 348 ~~~~~s~dg~~l~~~~~~~~~~~~~~~~~-g~--~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~ 418 (433)
T 3bws_A 348 NTIALSPDGKYLYVSCRGPNHPTEGYLKK-GL--VLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVIS 418 (433)
T ss_dssp EEEEECTTSSEEEEEECCCCCTTTCTTSC-CS--SCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEE
T ss_pred CeEEEcCCCCEEEEEecCCCccccccccc-cc--cceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEE
Confidence 9999999999888765432100 000 00 011345666665555555544 4578999999999998654
No 110
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=1.8e-29 Score=220.83 Aligned_cols=217 Identities=9% Similarity=0.036 Sum_probs=148.0
Q ss_pred cccccccceeEEEEcc--------CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCc
Q 021399 5 LMKGHERPLTYLKYNK--------DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQT 75 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~--------~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~ 75 (313)
.+.||++.|++++|+| ||++|+|||.|++|+|||+.++..+..+.+|...|.+++|+|++. +|++++.|++
T Consensus 131 ~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~ 210 (393)
T 4gq1_A 131 GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGN 210 (393)
T ss_dssp TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCE
Confidence 5889999999999998 899999999999999999999988888999999999999999874 8999999999
Q ss_pred EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399 76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (313)
Q Consensus 76 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (313)
|++||+++++........... .......... ..........+|...+..+.|.
T Consensus 211 v~~wd~~t~~~~~~~~~~~~~------~~~~~~s~~~---------------------~~~~~~~~~~~~~~~v~~v~~~ 263 (393)
T 4gq1_A 211 IRIFDWTLNLSAEENSQTELV------KNPWLLTLNT---------------------LPLVNTCHSSGIASSLANVRWI 263 (393)
T ss_dssp EEEEETTCCC----------C------SCCCSEEEES---------------------GGGC------CCSSSCSEEEEE
T ss_pred EEEEECCCCcccccccccCCc------ccceEEeccc---------------------ccceeeeecccccccceeeeee
Confidence 999999987654332110000 0000000000 0001122335677788888886
Q ss_pred -cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEE------------------ECC--CCCEEEEeeCCCc
Q 021399 156 -PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLA------------------KAA--DGSHFLTGSLDKS 214 (313)
Q Consensus 156 -~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~------------------~s~--~~~~l~s~s~dg~ 214 (313)
|+++.+++++.|+.+++||+..++....+. .|...+..+. +++ ++.++++|+.||+
T Consensus 264 ~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~ 340 (393)
T 4gq1_A 264 GSDGSGILAMCKSGAWLRWNLFANNDYNEIS---DSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGL 340 (393)
T ss_dssp TTTTCEEEEECTTSEEEEEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTE
T ss_pred cCCCCEEEEEeCCCCEEEEECccCCCCceEe---eecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCE
Confidence 889999999999999999998766544332 2222222222 222 4446788889999
Q ss_pred EEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEcc
Q 021399 215 AKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 215 i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~ 251 (313)
|++||+.+++++..+. +..+|.+++|+|++..++++.
T Consensus 341 V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as 378 (393)
T 4gq1_A 341 IQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIAT 378 (393)
T ss_dssp EEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 9999999988766654 567899999999999887764
No 111
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=5.7e-27 Score=204.35 Aligned_cols=241 Identities=11% Similarity=0.078 Sum_probs=185.4
Q ss_pred ccccccceeEEEEccCCCEE-EEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEE-EeeCCCcEEEEECCC
Q 021399 6 MKGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQTAKLWNVET 83 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l-~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~~v~vWd~~~ 83 (313)
+.+|. .+.+++|+|+|++| ++++.|+.|++||..+++.+..+..|. .+.+++|+|+++.++ +++.|+.|++||+.+
T Consensus 28 ~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~ 105 (391)
T 1l0q_A 28 IPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS 105 (391)
T ss_dssp EECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred eecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCC
Confidence 44554 58999999999987 677799999999999999998888766 899999999999764 555779999999999
Q ss_pred CeEEEEecCCCCeeEEEeecCCeEE-EEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE-
Q 021399 84 GAQLFTFNFDSPARSVDFAVGDKLA-VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI- 161 (313)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i- 161 (313)
++.+..+.....+..+.|+++++.+ +.... ...+.++++ ..++.+..+..+ ..+..+.|+|+++.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~~v~~~d~------~~~~~~~~~~~~-~~~~~~~~~~dg~~l~ 173 (391)
T 1l0q_A 106 NTVAGTVKTGKSPLGLALSPDGKKLYVTNNG-----DKTVSVINT------VTKAVINTVSVG-RSPKGIAVTPDGTKVY 173 (391)
T ss_dssp TEEEEEEECSSSEEEEEECTTSSEEEEEETT-----TTEEEEEET------TTTEEEEEEECC-SSEEEEEECTTSSEEE
T ss_pred CeEEEEEeCCCCcceEEECCCCCEEEEEeCC-----CCEEEEEEC------CCCcEEEEEecC-CCcceEEECCCCCEEE
Confidence 9888777777778889999877655 33321 122223322 123344444444 456889999999877
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee---CCCcEEEEECCCCcEEEEEecCCceeEE
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDARTLELIKTYVTERPVNAV 238 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s---~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 238 (313)
++++.++.|++||+.+++....+. +...+.+++|+|+++++++++ .|+.|++||+++++++..+.....+.++
T Consensus 174 ~~~~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 249 (391)
T 1l0q_A 174 VANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGI 249 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEE
T ss_pred EEeCCCCEEEEEECCCCeEEEEEe----cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEE
Confidence 677889999999999887765543 456789999999999999988 6899999999999998888776678899
Q ss_pred EeccCCCEEEEcccccCceeEeeccCC
Q 021399 239 TMSPLLDHVVLGGGQDASAVTTTDHRA 265 (313)
Q Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~ 265 (313)
+|+|+++.++++++.+ +.+.+||...
T Consensus 250 ~~s~dg~~l~~s~~~d-~~v~v~d~~~ 275 (391)
T 1l0q_A 250 AVTPDGKKVYVALSFX-NTVSVIDTAT 275 (391)
T ss_dssp EECTTSSEEEEEETTT-TEEEEEETTT
T ss_pred EEccCCCEEEEEcCCC-CEEEEEECCC
Confidence 9999999887765544 3344444433
No 112
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.2e-29 Score=224.70 Aligned_cols=202 Identities=13% Similarity=0.059 Sum_probs=154.6
Q ss_pred cccccccceeEEEEccC------CCEEEEeeCCCCeEEEeCCCCcE-----------EEEecCCCCceEEEEECCCCCeE
Q 021399 5 LMKGHERPLTYLKYNKD------GDLLFSCAKDHTPTVWFADNGER-----------LGTYRGHNGAVWCCDVSRDSMTL 67 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~------g~~l~s~s~d~~i~iw~~~~~~~-----------~~~~~~H~~~V~~~~~~~~~~~l 67 (313)
++.+|.+.|.+++|+|+ +.+|++++.|++|+|||+.++.. ..++.+|...|++++|++++ .|
T Consensus 202 ~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~l 280 (524)
T 2j04_B 202 TIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TV 280 (524)
T ss_dssp EEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EE
T ss_pred EEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eE
Confidence 46678899999999997 57999999999999999987642 24788999999999999864 89
Q ss_pred EEeeCCCcEEEEECCCCe-EEEEe-cCCCCeeEE--EeecCC-e-EEEEECCCceeccccceeeeeeeCCCCCCCceEEE
Q 021399 68 ITGSADQTAKLWNVETGA-QLFTF-NFDSPARSV--DFAVGD-K-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 141 (313)
Q Consensus 68 ~s~s~D~~v~vWd~~~~~-~~~~~-~~~~~~~~~--~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (313)
++|+.||+|++||+++++ +...+ .+..++.++ .+.+++ . ++.++.+.... +|++.. ......
T Consensus 281 asgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk------lWD~~~------~~~~~~ 348 (524)
T 2j04_B 281 VCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY------IFNPKD------IATTKT 348 (524)
T ss_dssp EEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE------EECGGG------HHHHCE
T ss_pred EEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE------EEECCC------CCcccc
Confidence 999999999999998763 22323 356678887 455653 4 45555554433 333221 111112
Q ss_pred ecCCC--CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEE
Q 021399 142 LKGPQ--GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (313)
Q Consensus 142 ~~~~~--~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd 219 (313)
+.+|. ..+.+++|+|+++.+++++.|++|++||++++.++..+. +|...|++++|+|+|.+|++|+.||+|++||
T Consensus 349 ~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~---gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 349 TVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV---SRETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp EEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE---ECSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred cccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee---cCCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 23333 247789999999999999999999999999887655443 6899999999999999999999999999998
Q ss_pred CCC
Q 021399 220 ART 222 (313)
Q Consensus 220 ~~~ 222 (313)
+..
T Consensus 426 ~~~ 428 (524)
T 2j04_B 426 AAR 428 (524)
T ss_dssp SCS
T ss_pred chH
Confidence 643
No 113
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.7e-29 Score=212.24 Aligned_cols=185 Identities=10% Similarity=0.045 Sum_probs=146.1
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCC---------CCcEEEEec-CCCCceEEEEECC--CCCeEEEeeCCCcEEE
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFAD---------NGERLGTYR-GHNGAVWCCDVSR--DSMTLITGSADQTAKL 78 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~---------~~~~~~~~~-~H~~~V~~~~~~~--~~~~l~s~s~D~~v~v 78 (313)
..|.++.|+|+ +++++.|+.|++|+.. +++.+..+. +|.+.|.+++|+| +++++++++.|++|++
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~ 153 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF 153 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence 56777888888 9999999999999655 555455554 7888999999999 9999999999999999
Q ss_pred EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (313)
Q Consensus 79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (313)
||+++++...... ..+...+.++.|+|++
T Consensus 154 wd~~~~~~~~~~~---------------------------------------------------~~~~~~i~~~~~~pdg 182 (343)
T 3lrv_A 154 QSYEDDSQYIVHS---------------------------------------------------AKSDVEYSSGVLHKDS 182 (343)
T ss_dssp EESSSSCEEEEEC---------------------------------------------------CCSSCCCCEEEECTTS
T ss_pred EECCCCcEEEEEe---------------------------------------------------cCCCCceEEEEECCCC
Confidence 9998876532110 1123457889999999
Q ss_pred CEEEEeeCCCeEEEEECCCCcee-eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec----CC
Q 021399 159 RTIISAGEDAIVRIWDTETGKLL-KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT----ER 233 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~ 233 (313)
.++++|+.|+.|++||+++++.+ ..+.. +|...|++++|+|++.+|++++ |+.|++||+++++++..+.. ..
T Consensus 183 ~~lasg~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~ 259 (343)
T 3lrv_A 183 LLLALYSPDGILDVYNLSSPDQASSRFPV--DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEF 259 (343)
T ss_dssp CEEEEECTTSCEEEEESSCTTSCCEECCC--CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC---
T ss_pred CEEEEEcCCCEEEEEECCCCCCCccEEec--cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccc
Confidence 99999999999999999988766 44431 3889999999999999999999 55999999999877654431 12
Q ss_pred cee--EEEeccCCCEEEEccc
Q 021399 234 PVN--AVTMSPLLDHVVLGGG 252 (313)
Q Consensus 234 ~~~--~~~~~p~~~~~~~~~~ 252 (313)
++. +++|+|++..++++++
T Consensus 260 ~~~~~~~~~~~~g~~l~~~s~ 280 (343)
T 3lrv_A 260 KTGTVTYDIDDSGKNMIAYSN 280 (343)
T ss_dssp --CCEEEEECTTSSEEEEEET
T ss_pred cccceEEEECCCCCEEEEecC
Confidence 333 6999999999887655
No 114
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=1.7e-27 Score=211.05 Aligned_cols=224 Identities=24% Similarity=0.398 Sum_probs=178.2
Q ss_pred ccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
..+.+|...|.+++| ++++|++|+.||.|++||+.+++.+.++.+|...|.+++|++ +.+++|+.|++|++||+.+
T Consensus 167 ~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~ 242 (435)
T 1p22_A 167 RILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMAS 242 (435)
T ss_dssp EEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSS
T ss_pred EEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCC
Confidence 367899999999998 788999999999999999999999999999999999999974 4899999999999999987
Q ss_pred CeEE---EEe-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC
Q 021399 84 GAQL---FTF-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (313)
Q Consensus 84 ~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (313)
++.. ... .+...+..+.+ .+..++.+..+.. +.++++ ..+..+..+.+|...+.++.++ ++
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~------i~vwd~------~~~~~~~~~~~~~~~v~~~~~~--~~ 307 (435)
T 1p22_A 243 PTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRT------IKVWNT------STCEFVRTLNGHKRGIACLQYR--DR 307 (435)
T ss_dssp SSCCEEEEEECCCSSCEEEEEE-ETTEEEEEETTSE------EEEEET------TTCCEEEEEECCSSCEEEEEEE--TT
T ss_pred CCCceeeeEecCCCCcEEEEEe-CCCEEEEEeCCCe------EEEEEC------CcCcEEEEEcCCCCcEEEEEeC--CC
Confidence 7643 222 34556777777 4555555554433 233332 2345667788899999998884 67
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc---------EEEEEe
Q 021399 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE---------LIKTYV 230 (313)
Q Consensus 160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~---------~~~~~~ 230 (313)
.+++|+.|+.|++||+.+++++..+. +|...|.++++ ++.+|++|+.||.|++||+++++ ++..+.
T Consensus 308 ~l~~g~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 382 (435)
T 1p22_A 308 LVVSGSSDNTIRLWDIECGACLRVLE---GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 382 (435)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC---CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC
T ss_pred EEEEEeCCCeEEEEECCCCCEEEEEe---CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeecc
Confidence 99999999999999999988877654 68899999998 78899999999999999998765 777764
Q ss_pred -cCCceeEEEeccCCCEEEEccccc
Q 021399 231 -TERPVNAVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 231 -~~~~~~~~~~~p~~~~~~~~~~~~ 254 (313)
+...+.+++| ++..+++ ++.|
T Consensus 383 ~h~~~v~~l~~--~~~~l~s-~s~D 404 (435)
T 1p22_A 383 EHSGRVFRLQF--DEFQIVS-SSHD 404 (435)
T ss_dssp CCSSCCCCEEE--CSSCEEE-CCSS
T ss_pred CCCCCeEEEEe--CCCEEEE-EeCC
Confidence 4567899998 4455544 4433
No 115
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.6e-27 Score=209.13 Aligned_cols=226 Identities=14% Similarity=0.102 Sum_probs=179.7
Q ss_pred ccccccceeEEEEccCCCEE-EEeeCCCCeEEEeCC--CCcEEEEec--CCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399 6 MKGHERPLTYLKYNKDGDLL-FSCAKDHTPTVWFAD--NGERLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l-~s~s~d~~i~iw~~~--~~~~~~~~~--~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd 80 (313)
..+|.+.|.+++|+|+|++| ++++.|+.|+|||+. +++.+..+. .|...|.+++|+|++++|++|+.|+.+++|+
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~ 177 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSID 177 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEe
Confidence 34677889999999999996 899999999999999 888888886 6778999999999999999999999999999
Q ss_pred CCCCeEEE----Ee-cCCCCeeEEEeecC---CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE-ecCCCCceEE
Q 021399 81 VETGAQLF----TF-NFDSPARSVDFAVG---DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINR 151 (313)
Q Consensus 81 ~~~~~~~~----~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~ 151 (313)
+.+++... .+ .+...+.++.|+|+ +..++.... +..+.+|++.. +..+.. +.+|.+.|.+
T Consensus 178 ~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-----d~~i~vwd~~~------~~~~~~~~~~h~~~v~~ 246 (450)
T 2vdu_B 178 INSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR-----DEHIKISHYPQ------CFIVDKWLFGHKHFVSS 246 (450)
T ss_dssp TTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET-----TSCEEEEEESC------TTCEEEECCCCSSCEEE
T ss_pred cCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC-----CCcEEEEECCC------CceeeeeecCCCCceEE
Confidence 98765432 22 24567889999998 766554432 23445555432 223333 5689999999
Q ss_pred EEEccCCCEEEEeeCCCeEEEEECCCCceeeeccccc----------------------CceeceEEEEECCCCCEEEEe
Q 021399 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET----------------------GHKKTITSLAKAADGSHFLTG 209 (313)
Q Consensus 152 ~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~----------------------~h~~~v~~~~~s~~~~~l~s~ 209 (313)
++|+ ++++|++++.|+.|++||+.+++++..+.... .....+.+++++|++.+|+++
T Consensus 247 ~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~ 325 (450)
T 2vdu_B 247 ICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFF 325 (450)
T ss_dssp EEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEE
T ss_pred EEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEE
Confidence 9999 99999999999999999999988766553210 234578999999999999999
Q ss_pred e-CCCcEEEEEC--CCC---cEEEEEecCCceeEEEeccC
Q 021399 210 S-LDKSAKLWDA--RTL---ELIKTYVTERPVNAVTMSPL 243 (313)
Q Consensus 210 s-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~~~~~p~ 243 (313)
+ .|+.|++||+ .++ +++..+.....+.+++|+|.
T Consensus 326 ~~~d~~i~iw~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~ 365 (450)
T 2vdu_B 326 VEATKCIIILEMSEKQKGDLALKQIITFPYNVISLSAHND 365 (450)
T ss_dssp ETTCSEEEEEEECSSSTTCEEEEEEEECSSCEEEEEEETT
T ss_pred ECCCCeEEEEEeccCCCCceeeccEeccCCceEEEEecCC
Confidence 9 8999999999 555 66677766678999999994
No 116
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.1e-26 Score=202.52 Aligned_cols=254 Identities=13% Similarity=0.115 Sum_probs=193.5
Q ss_pred CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeE-EEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEe
Q 021399 23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF 101 (313)
Q Consensus 23 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~ 101 (313)
..+++++.|+.|++||+++++.+..+..|.. +.+++|+|+++.+ ++++.|++|++||+.+++.+..+.....+..+.|
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~ 81 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEE
Confidence 4688899999999999999999999988754 8999999999865 7778999999999999998888877778889999
Q ss_pred ecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE-EEeeCCCeEEEEECCCCce
Q 021399 102 AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGEDAIVRIWDTETGKL 180 (313)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~t~~~d~~i~lwd~~~~~~ 180 (313)
++++..+++.... ...+.++++. .++.+..+.. ...+..+.|+|+++.+ ++++.++.|++||+.+++.
T Consensus 82 spdg~~l~~~~~~----~~~v~v~d~~------~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~ 150 (391)
T 1l0q_A 82 SPDGKQVYVTNMA----SSTLSVIDTT------SNTVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV 150 (391)
T ss_dssp CTTSSEEEEEETT----TTEEEEEETT------TTEEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred CCCCCEEEEEECC----CCEEEEEECC------CCeEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 9977655433211 1222333221 2333444443 4467899999999977 6888899999999998887
Q ss_pred eeecccccCceeceEEEEECCCCCEE-EEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccc-cCcee
Q 021399 181 LKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQ-DASAV 258 (313)
Q Consensus 181 ~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~ 258 (313)
+..+. ....+.+++|+|+++++ ++++.|+.|++||+++++++..+.....+..++|+|++..+++++.. ....
T Consensus 151 ~~~~~----~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~- 225 (391)
T 1l0q_A 151 INTVS----VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNT- 225 (391)
T ss_dssp EEEEE----CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCE-
T ss_pred EEEEe----cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCCCccceEECCCCCEEEEEecCcCCCc-
Confidence 66553 23457899999999987 67788999999999999998888777788999999999988877531 1223
Q ss_pred EeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 259 TTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
+++||..+++.+..+..|. .+.+++|+|||+++.+
T Consensus 226 -----------v~~~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~ 260 (391)
T 1l0q_A 226 -----------VSMIDTGTNKITARIPVGP-DPAGIAVTPDGKKVYV 260 (391)
T ss_dssp -----------EEEEETTTTEEEEEEECCS-SEEEEEECTTSSEEEE
T ss_pred -----------EEEEECCCCeEEEEEecCC-CccEEEEccCCCEEEE
Confidence 4455555555555555554 4789999999998643
No 117
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.9e-28 Score=213.38 Aligned_cols=211 Identities=12% Similarity=0.102 Sum_probs=163.7
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCCeEEEeCC---CCcEEEEecC------------CCCceEEEE--ECCCCCeEEE
Q 021399 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFAD---NGERLGTYRG------------HNGAVWCCD--VSRDSMTLIT 69 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~---~~~~~~~~~~------------H~~~V~~~~--~~~~~~~l~s 69 (313)
.+|...|.+++|+|++++|++|+.|+.|++||++ +++.+..+.+ +...+.++. ++++++++++
T Consensus 108 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (437)
T 3gre_A 108 YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA 187 (437)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence 3799999999999999999999999999999985 5555444332 456666666 5678999999
Q ss_pred eeCCCcEEEEECCCCeEEEEec---CCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEec-C
Q 021399 70 GSADQTAKLWNVETGAQLFTFN---FDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILK-G 144 (313)
Q Consensus 70 ~s~D~~v~vWd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 144 (313)
++.|++|++||+++++.+..+. +...+.++.|.+++..++. ..+. .+.+|++. .+..+..+. .
T Consensus 188 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~iwd~~------~~~~~~~~~~~ 255 (437)
T 3gre_A 188 LTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRG------IIDIWDIR------FNVLIRSWSFG 255 (437)
T ss_dssp EETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTS------CEEEEETT------TTEEEEEEBCT
T ss_pred EeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCC------eEEEEEcC------CccEEEEEecC
Confidence 9999999999999998887775 3578899999987665554 3333 23334332 234455554 6
Q ss_pred CCCceEEEEEcc----CCCEEEEeeCCCeEEEEECCCCceeeecccc---------------------c--CceeceEEE
Q 021399 145 PQGRINRAVWGP----LNRTIISAGEDAIVRIWDTETGKLLKESDKE---------------------T--GHKKTITSL 197 (313)
Q Consensus 145 ~~~~i~~~~~~~----~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~---------------------~--~h~~~v~~~ 197 (313)
|...|.++.|+| ++.++++++.|+.|++||+.+++++..+... . .|...|+++
T Consensus 256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 335 (437)
T 3gre_A 256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI 335 (437)
T ss_dssp TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE
T ss_pred CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE
Confidence 778899996664 5779999999999999999988866554321 1 277789999
Q ss_pred EECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 198 AKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 198 ~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
+|+ ++.+|++|+.|+.|++||+++++++..+.
T Consensus 336 ~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 336 SVS-NDKILLTDEATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp EEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEE
T ss_pred EEC-CceEEEecCCCCeEEEEECCCcccceEEe
Confidence 999 78999999999999999999988766554
No 118
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.96 E-value=4.6e-28 Score=214.69 Aligned_cols=237 Identities=13% Similarity=0.108 Sum_probs=166.5
Q ss_pred cccccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEecC--CCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399 5 LMKGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRG--HNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~--H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
.+.+|.+.|.+++|+| ++++|+||+.|++|++||++++........ +...+.+++|+|++++|++|+.||+|++||+
T Consensus 159 ~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~ 238 (435)
T 4e54_B 159 KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM 238 (435)
T ss_dssp CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEES
T ss_pred EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeecc
Confidence 4678999999999998 689999999999999999987654433333 3445788999999999999999999999999
Q ss_pred CCCeEEEEecCCCCeeEEEeecCCe-EE-EEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC
Q 021399 82 ETGAQLFTFNFDSPARSVDFAVGDK-LA-VITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (313)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (313)
+.........+...+.++.|+|.+. ++ .+..+.. +.+|++.... .........+|...|.+++|+|++.
T Consensus 239 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~------v~iwd~~~~~---~~~~~~~~~~h~~~v~~~~~spdg~ 309 (435)
T 4e54_B 239 DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQT------VKIWDLRQVR---GKASFLYSLPHRHPVNAACFSPDGA 309 (435)
T ss_dssp SSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSB------CCEEETTTCC---SSSCCSBCCBCSSCEEECCBCTTSS
T ss_pred CcceeEEEecccceEEeeeecCCCceEEEEecCcce------eeEEeccccc---ccceEEEeeeccccccceeECCCCC
Confidence 7543222223456788999998643 33 3334433 3334332111 1112223356888999999999999
Q ss_pred EEEEeeCCCeEEEEECCCCceeeeccccc-Cc--eeceEEEEECCCCCEEEEee------------CCCcEEEEECCCCc
Q 021399 160 TIISAGEDAIVRIWDTETGKLLKESDKET-GH--KKTITSLAKAADGSHFLTGS------------LDKSAKLWDARTLE 224 (313)
Q Consensus 160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~~-~h--~~~v~~~~~s~~~~~l~s~s------------~dg~i~iwd~~~~~ 224 (313)
+|++++.|+.|++||+.++.....+.... .+ ...+....|+|++..+++++ .++.|++||..+++
T Consensus 310 ~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~ 389 (435)
T 4e54_B 310 RLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGK 389 (435)
T ss_dssp EEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCC
T ss_pred eeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCc
Confidence 99999999999999998877654432211 01 11223345666666555543 24579999999999
Q ss_pred EEEEEe--cCCceeEE-EeccCCCEEEEc
Q 021399 225 LIKTYV--TERPVNAV-TMSPLLDHVVLG 250 (313)
Q Consensus 225 ~~~~~~--~~~~~~~~-~~~p~~~~~~~~ 250 (313)
++..+. +...+.++ +|+|++..++.+
T Consensus 390 ~~~~l~~~~~~~v~s~~~fspdg~~lasg 418 (435)
T 4e54_B 390 MMCQLYDPESSGISSLNEFNPMGDTLASA 418 (435)
T ss_dssp EEEEECCSSCCCCCCEEEECTTSSCEEEE
T ss_pred EEEEEeCCCCCcEEEEEEECCCCCEEEEE
Confidence 988875 33456666 699999876643
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.9e-28 Score=228.40 Aligned_cols=209 Identities=20% Similarity=0.327 Sum_probs=166.8
Q ss_pred ccccccccceeEEEEccC--CCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCC--CCeEEEeeCCCcEE
Q 021399 4 ILMKGHERPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRD--SMTLITGSADQTAK 77 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~--g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~--~~~l~s~s~D~~v~ 77 (313)
..+.+|.++|.+++|+|+ +++|++|+.||.|++||+.+++ .+..+.+|...|.+++|+|+ ++.+++|+.||+|+
T Consensus 47 ~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~ 126 (753)
T 3jro_A 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVS 126 (753)
T ss_dssp EEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEE
T ss_pred eeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEE
Confidence 367899999999999988 9999999999999999999987 67888999999999999999 99999999999999
Q ss_pred EEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc-
Q 021399 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP- 156 (313)
Q Consensus 78 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~- 156 (313)
+||+.++... ....+.+|...|.++.|+|
T Consensus 127 vwdl~~~~~~--------------------------------------------------~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 127 VVEFKENGTT--------------------------------------------------SPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp EEECCSSSCC--------------------------------------------------CCEEEECCSSCEEEEEECCC
T ss_pred EEEeecCCCc--------------------------------------------------ceeEeecCCCceEEEEecCc
Confidence 9998765211 0112234566777777777
Q ss_pred ------------CCCEEEEeeCCCeEEEEECCCCcee-eecccccCceeceEEEEECCC---CCEEEEeeCCCcEEEEEC
Q 021399 157 ------------LNRTIISAGEDAIVRIWDTETGKLL-KESDKETGHKKTITSLAKAAD---GSHFLTGSLDKSAKLWDA 220 (313)
Q Consensus 157 ------------~~~~i~t~~~d~~i~lwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~---~~~l~s~s~dg~i~iwd~ 220 (313)
++..+++|+.||.|++||+.++... .......+|...|++++|+|+ +.+|++++.||.|++||+
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp C---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred ccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence 5889999999999999998776321 111223468999999999999 899999999999999999
Q ss_pred CCCcE-----EEE-EecCCceeEEEeccCCCEEEEcccccCceeEeeccC
Q 021399 221 RTLEL-----IKT-YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR 264 (313)
Q Consensus 221 ~~~~~-----~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 264 (313)
++++. +.. ..+...+.+++|+|++..+++++. ++.+.+|+.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~--Dg~I~vwd~~ 284 (753)
T 3jro_A 237 DNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG--DNKVTLWKEN 284 (753)
T ss_dssp SSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECS--SSCEECCBCC
T ss_pred CCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcC--CCEEEEEecC
Confidence 98642 111 124557899999999998777654 3346667654
No 120
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=3.7e-26 Score=193.25 Aligned_cols=233 Identities=17% Similarity=0.263 Sum_probs=178.7
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
.+.+|...|.+++|+|+|++|++|+.|+.|++|+.++++.+.++.+|...+.++++ +++.+++++.++.+++|+....
T Consensus 62 ~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~ 139 (318)
T 4ggc_A 62 QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVA 139 (318)
T ss_dssp ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSS
T ss_pred EecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCC
Confidence 45688899999999999999999999999999999999999999999999987665 4679999999999999998765
Q ss_pred eE-EEEe-cCCCCeeEEEeecCCeEEEE-ECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 85 AQ-LFTF-NFDSPARSVDFAVGDKLAVI-TTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 85 ~~-~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
.. +... .+......+.+.+.+..++. ..+.. +.++++.... ...........+.+.+..+.++|.+..+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~------i~iwd~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 211 (318)
T 4ggc_A 140 EHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNL------VNVWPSAPGE--GGWVPLQTFTQHQGAVKAVAWCPWQSNV 211 (318)
T ss_dssp SCEEEEEECCSSCEEEEEECTTSSEEEEEETTSC------EEEEESSCBT--TBSCCSEEECCCCSCEEEEEECTTSTTE
T ss_pred ceeEEEEcCccCceEEEEEcCCCCEEEEEecCcc------eeEEECCCCc--ccccceeeecccCCceEEEEecCCCCcE
Confidence 43 3333 34556777777776554443 33332 3334332211 1112234455677889999999876543
Q ss_pred ---EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee--CCCcEEEEECCCCcEEEEEe-cCCce
Q 021399 162 ---ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDARTLELIKTYV-TERPV 235 (313)
Q Consensus 162 ---~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~-~~~~~ 235 (313)
++++.++.|++||.......... .+...+..+.+++++..+++++ .|+.|++||+++++++.++. +...|
T Consensus 212 ~~~~~~~~~~~i~lwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V 287 (318)
T 4ggc_A 212 LATGGGTSDRHIRIWNVCSGACLSAV----DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRV 287 (318)
T ss_dssp EEEEECTTTCEEEEEETTTCCEEEEE----ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCE
T ss_pred EEEEecCCCCEEEEEecccccccccc----cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCE
Confidence 46778899999999887765443 3567799999999999887755 79999999999999999986 56789
Q ss_pred eEEEeccCCCEEEEcc
Q 021399 236 NAVTMSPLLDHVVLGG 251 (313)
Q Consensus 236 ~~~~~~p~~~~~~~~~ 251 (313)
.+++|+|++..+++++
T Consensus 288 ~~l~~spdg~~l~S~s 303 (318)
T 4ggc_A 288 LSLTMSPDGATVASAA 303 (318)
T ss_dssp EEEEECTTSSCEEEEE
T ss_pred EEEEEcCCCCEEEEEe
Confidence 9999999998876654
No 121
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=6.7e-27 Score=206.94 Aligned_cols=198 Identities=17% Similarity=0.291 Sum_probs=160.2
Q ss_pred cccccccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcE-------EEEecCCCCceEEEEECC-CCCeEEEeeCCCc
Q 021399 5 LMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGER-------LGTYRGHNGAVWCCDVSR-DSMTLITGSADQT 75 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~-------~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~ 75 (313)
.+.+|...|.+++|+|+++ +|++|+.||.|++|++.++.. ...+.+|...|.+++|+| ++.+|++++.|+.
T Consensus 176 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~ 255 (430)
T 2xyi_A 176 RLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQK 255 (430)
T ss_dssp EEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred EecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCe
Confidence 5788999999999999998 999999999999999987422 456789999999999999 6779999999999
Q ss_pred EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399 76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (313)
Q Consensus 76 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (313)
|++||++++.. ...+..+..|...++++.|+
T Consensus 256 i~i~d~~~~~~-------------------------------------------------~~~~~~~~~~~~~v~~i~~~ 286 (430)
T 2xyi_A 256 LMIWDTRNNNT-------------------------------------------------SKPSHTVDAHTAEVNCLSFN 286 (430)
T ss_dssp EEEEETTCSCS-------------------------------------------------SSCSEEEECCSSCEEEEEEC
T ss_pred EEEEECCCCCC-------------------------------------------------CcceeEeecCCCCeEEEEeC
Confidence 99999986420 00112234577889999999
Q ss_pred cCCC-EEEEeeCCCeEEEEECCCC-ceeeecccccCceeceEEEEECCCCC-EEEEeeCCCcEEEEECCC----------
Q 021399 156 PLNR-TIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGS-HFLTGSLDKSAKLWDART---------- 222 (313)
Q Consensus 156 ~~~~-~i~t~~~d~~i~lwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~dg~i~iwd~~~---------- 222 (313)
|.++ .+++|+.|+.|++||+++. .++..+ .+|...|.+++|+|++. .|++++.|+.|++||++.
T Consensus 287 p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~---~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 363 (430)
T 2xyi_A 287 PYSEFILATGSADKTVALWDLRNLKLKLHSF---ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363 (430)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCTTSCSEEE---ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHH
T ss_pred CCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe---ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcccc
Confidence 9887 6889999999999999873 444443 35889999999999985 699999999999999987
Q ss_pred ----CcEEEEEe-cCCceeEEEeccCCCEEEEccccc
Q 021399 223 ----LELIKTYV-TERPVNAVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 223 ----~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~ 254 (313)
.+++..+. +...+.+++|+|++..++++++.+
T Consensus 364 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~d 400 (430)
T 2xyi_A 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSED 400 (430)
T ss_dssp HHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETT
T ss_pred ccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECC
Confidence 24555543 355799999999998556555544
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.2e-26 Score=194.36 Aligned_cols=243 Identities=11% Similarity=0.056 Sum_probs=162.4
Q ss_pred EEEEccCCC---EEEEeeCCCCeEEEeCCCC---cEEEEecCCCCc-------------------------eEEEEECCC
Q 021399 15 YLKYNKDGD---LLFSCAKDHTPTVWFADNG---ERLGTYRGHNGA-------------------------VWCCDVSRD 63 (313)
Q Consensus 15 ~~~fs~~g~---~l~s~s~d~~i~iw~~~~~---~~~~~~~~H~~~-------------------------V~~~~~~~~ 63 (313)
++.|-.-|- -++++++ ..|++|+..++ +.++++.+|+.+ |.+++++|+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd 122 (356)
T 2w18_A 44 AMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSD 122 (356)
T ss_dssp EEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC---
T ss_pred eeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCC
Confidence 444544333 6777775 68999999999 888999888864 456666777
Q ss_pred ----CCeEEEeeCCCcEEEEECCCCeEEEEec--CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCc
Q 021399 64 ----SMTLITGSADQTAKLWNVETGAQLFTFN--FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE 137 (313)
Q Consensus 64 ----~~~l~s~s~D~~v~vWd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (313)
++.+++++.+ +++|++.+++.+.... +...+..+.+++++ +
T Consensus 123 ~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG-------------------------------~ 169 (356)
T 2w18_A 123 DESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDG-------------------------------G 169 (356)
T ss_dssp ---CCEEEEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTS-------------------------------C
T ss_pred ccccccEEEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCC-------------------------------c
Confidence 7778887744 7788888777665532 33444444444322 2
Q ss_pred eEEEecCCCCceEEEEEcc---CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEE--------
Q 021399 138 SVLILKGPQGRINRAVWGP---LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-------- 206 (313)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~---~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-------- 206 (313)
.+..+.+|...+..++|+| +++.|++++.|++|+|||++++++++++.....+...+.+++|+|+|.++
T Consensus 170 ~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~ 249 (356)
T 2w18_A 170 GKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCA 249 (356)
T ss_dssp EEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----
T ss_pred eeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCC
Confidence 3344556777888889998 67999999999999999999999988875322234578888999999986
Q ss_pred ----EEeeCCCcEEEEECCCCcEEEEEe----cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhh
Q 021399 207 ----LTGSLDKSAKLWDARTLELIKTYV----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 278 (313)
Q Consensus 207 ----~s~s~dg~i~iwd~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (313)
++|+.|++|++||.++++++..+. ..+....++.+..+. ++++++.|. .+++||..++
T Consensus 250 ~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~-~lASgS~Dg-------------TIkIWDl~tG 315 (356)
T 2w18_A 250 KESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDH-CAAAILTSG-------------TIAIWDLLLG 315 (356)
T ss_dssp --------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEETT-EEEEEETTS-------------CEEEEETTTC
T ss_pred cceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccCCC-EEEEEcCCC-------------cEEEEECCCC
Confidence 678899999999999999876552 111111222222222 344444332 3678999889
Q ss_pred hhhcccccccccee-EEEECCCCCeeEE
Q 021399 279 EEIGGVKGHFGPIN-ALAFNPDGKRYGF 305 (313)
Q Consensus 279 ~~~~~~~~h~~~V~-~~~fspdgk~~~~ 305 (313)
+.+..+.+|...+. .++|||||++++.
T Consensus 316 k~l~tL~gH~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 316 QCTALLPPVSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp SEEEEECCC--CCCCEEEECSSSSEEEE
T ss_pred cEEEEecCCCCCeEEEEEECCCCCEEEE
Confidence 88889999988765 5899999998774
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=6.3e-27 Score=195.95 Aligned_cols=199 Identities=15% Similarity=0.150 Sum_probs=139.2
Q ss_pred cceeEEEEccC----CCEEEEeeC--------------------CCCeEEEeC-CCCcEEEEecCCCCceEEEEECC---
Q 021399 11 RPLTYLKYNKD----GDLLFSCAK--------------------DHTPTVWFA-DNGERLGTYRGHNGAVWCCDVSR--- 62 (313)
Q Consensus 11 ~~v~~~~fs~~----g~~l~s~s~--------------------d~~i~iw~~-~~~~~~~~~~~H~~~V~~~~~~~--- 62 (313)
..|+.++|+|| ++++++++. |+.|++|++ .+++.+..+.+|...+..++|++
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g 191 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQG 191 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEET
T ss_pred cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCC
Confidence 36777888888 778887663 888888888 45777778888888888888888
Q ss_pred CCCeEEEeeCCCcEEEEECCCCeEEEEecC----CCCeeEEEeecCCeEEEEECCCc-------eeccccceeeeeeeCC
Q 021399 63 DSMTLITGSADQTAKLWNVETGAQLFTFNF----DSPARSVDFAVGDKLAVITTDPF-------MELNSAIHVKRIARDP 131 (313)
Q Consensus 63 ~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 131 (313)
++++|+|+|.|++|||||+.+++++.++.. ...+..+.|+|+++.++....+. ...+..++.++.
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~---- 267 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP---- 267 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEET----
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC----
Confidence 668999999999999999999998888752 12455668999888776544211 011111222221
Q ss_pred CCCCCceEEEe-----cCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceE-EEEECCCCCE
Q 021399 132 ADQGGESVLIL-----KGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTIT-SLAKAADGSH 205 (313)
Q Consensus 132 ~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~ 205 (313)
..+..+..+ .+|.+.+.+. +..+..+++++.|++|+|||+.+++++.++. +|...+. +++|+|||++
T Consensus 268 --~tgk~l~v~~~~~p~Gh~~~~lsg--~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~---gH~~~vvs~vafSPDG~~ 340 (356)
T 2w18_A 268 --KTTLSVGVMLYCLPPGQAGRFLEG--DVKDHCAAAILTSGTIAIWDLLLGQCTALLP---PVSDQHWSFVKWSGTDSH 340 (356)
T ss_dssp --TTTEEEEEEEECCCTTCCCCEEEE--EEETTEEEEEETTSCEEEEETTTCSEEEEEC---CC--CCCCEEEECSSSSE
T ss_pred --CCCEEEEEEEeeccCCCcceeEcc--ccCCCEEEEEcCCCcEEEEECCCCcEEEEec---CCCCCeEEEEEECCCCCE
Confidence 122332222 3555444333 3336789999999999999999999887764 5766554 6899999999
Q ss_pred EEEeeCCCcEEEEEC
Q 021399 206 FLTGSLDKSAKLWDA 220 (313)
Q Consensus 206 l~s~s~dg~i~iwd~ 220 (313)
|+||+.|++|||||+
T Consensus 341 LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 341 LLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEECTTSCEEEEEE
T ss_pred EEEEECCCcEEEecC
Confidence 999999999999985
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=1.7e-25 Score=197.67 Aligned_cols=239 Identities=12% Similarity=0.019 Sum_probs=186.8
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeE-EEeeCCCcEEEEECCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTL-ITGSADQTAKLWNVET 83 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~ 83 (313)
.+.+|...|.+++|+|++.++++++.|+.|++||.++++.+.++..|...+.+++|+|+++.+ ++++.|+.|++||+.+
T Consensus 164 ~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 164 KYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT 243 (433)
T ss_dssp HHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred cccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence 456899999999999999999999999999999999999999999999999999999999877 4555899999999999
Q ss_pred CeEEEEecCCCCeeEEEeecCCeEEEEECCCcee---ccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFME---LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (313)
++.+..+.....+..+.+.+++..+++....... .+..+..+++. .++.+. ...+...+..++|+|+++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~------~~~~~~-~~~~~~~~~~~~~~~~g~~ 316 (433)
T 3bws_A 244 KLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD------KEKLID-TIGPPGNKRHIVSGNTENK 316 (433)
T ss_dssp TEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT------TTEEEE-EEEEEECEEEEEECSSTTE
T ss_pred CcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC------CCcEEe-eccCCCCcceEEECCCCCE
Confidence 9888777666667888898877555443210000 01122222221 122222 2234457788999999975
Q ss_pred E-EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC---------------CCcEEEEECCCCc
Q 021399 161 I-ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---------------DKSAKLWDARTLE 224 (313)
Q Consensus 161 i-~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---------------dg~i~iwd~~~~~ 224 (313)
+ ++++.|+.|++||+.+++.+..+. +...+.+++|+|+++++++++. ||.|++||+++++
T Consensus 317 l~~~~~~~~~v~v~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~ 392 (433)
T 3bws_A 317 IYVSDMCCSKIEVYDLKEKKVQKSIP----VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDT 392 (433)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEE----CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTE
T ss_pred EEEEecCCCEEEEEECCCCcEEEEec----CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCc
Confidence 4 667899999999999887765543 5567899999999999988876 5799999999999
Q ss_pred EEEEEecCCceeEEEeccCCCEEEEccccc
Q 021399 225 LIKTYVTERPVNAVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 225 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 254 (313)
.+..+.....+..++|+|++..+++++..+
T Consensus 393 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d 422 (433)
T 3bws_A 393 VKEFWEAGNQPTGLDVSPDNRYLVISDFLD 422 (433)
T ss_dssp EEEEEECSSSEEEEEECTTSCEEEEEETTT
T ss_pred EEEEecCCCCCceEEEcCCCCEEEEEECCC
Confidence 988887777889999999999888765433
No 125
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.95 E-value=3.3e-25 Score=193.63 Aligned_cols=250 Identities=14% Similarity=0.214 Sum_probs=181.4
Q ss_pred cccccceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCC---CeEEEeeCCCcEEEEECC
Q 021399 7 KGHERPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS---MTLITGSADQTAKLWNVE 82 (313)
Q Consensus 7 ~~h~~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~---~~l~s~s~D~~v~vWd~~ 82 (313)
.+|...|.+++|+| ++.+|++++.|+.|++||+.+++....+. |...+.++.+++.+ .++++++.|+.|++||++
T Consensus 96 ~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 96 DVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp TCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS
T ss_pred ccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC
Confidence 46999999999999 77899999999999999999999887776 78889999998854 499999999999999999
Q ss_pred CCeEEEEec-CCCCeeEEEeecCCe--EEEEECCCceeccccceeeeeeeCC----------CCCCCceEEEecCCCCce
Q 021399 83 TGAQLFTFN-FDSPARSVDFAVGDK--LAVITTDPFMELNSAIHVKRIARDP----------ADQGGESVLILKGPQGRI 149 (313)
Q Consensus 83 ~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~i 149 (313)
+++.+..+. +..++..+.|.+++. ++.+..+.... ++++.... .............|...|
T Consensus 175 ~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~------i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 248 (408)
T 4a11_B 175 SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVK------LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248 (408)
T ss_dssp SSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEE------EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCE
T ss_pred CcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEE------EEECCCCCcccccccccccccceeeccccccccCce
Confidence 888776665 566788999998765 44444444332 22221100 000000111124678899
Q ss_pred EEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccc--cCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEE
Q 021399 150 NRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE--TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK 227 (313)
Q Consensus 150 ~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~--~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~ 227 (313)
.++.|+|+++++++++.|+.|++||+.+++........ ......+........+..+++++.|+.|++||+++++++.
T Consensus 249 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~ 328 (408)
T 4a11_B 249 NGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT 328 (408)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE
T ss_pred eEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee
Confidence 99999999999999999999999999887654332211 0111122222223445567788889999999999999999
Q ss_pred EEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCC
Q 021399 228 TYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA 265 (313)
Q Consensus 228 ~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 265 (313)
.+. +...+.+++|+|++..+++++. | +.+.+|+...
T Consensus 329 ~~~~~~~~v~~~~~s~~~~~l~s~~~-d-g~i~iw~~~~ 365 (408)
T 4a11_B 329 MLKGHYKTVDCCVFQSNFQELYSGSR-D-CNILAWVPSL 365 (408)
T ss_dssp EECCCSSCEEEEEEETTTTEEEEEET-T-SCEEEEEECC
T ss_pred eeccCCCeEEEEEEcCCCCEEEEECC-C-CeEEEEeCCC
Confidence 886 5678999999999988776543 3 3344555443
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=5.9e-25 Score=193.51 Aligned_cols=227 Identities=12% Similarity=0.063 Sum_probs=174.7
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCC---CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEE-EeeCCCc--E
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDH---TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLI-TGSADQT--A 76 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~---~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~-s~s~D~~--v 76 (313)
++.+.+|...+.+++|+|||++|++++.|+ .|++||+++++.. .+..|.+.+.+++|+|||+.|+ +++.|+. |
T Consensus 171 ~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i 249 (415)
T 2hqs_A 171 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 249 (415)
T ss_dssp CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence 567788999999999999999999999885 9999999998775 5778889999999999999776 7776665 8
Q ss_pred EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
++||+.+++... +..|...+..+.|+|
T Consensus 250 ~~~d~~~~~~~~-----------------------------------------------------l~~~~~~~~~~~~sp 276 (415)
T 2hqs_A 250 YVMDLASGQIRQ-----------------------------------------------------VTDGRSNNTEPTWFP 276 (415)
T ss_dssp EEEETTTCCEEE-----------------------------------------------------CCCCSSCEEEEEECT
T ss_pred EEEECCCCCEEe-----------------------------------------------------CcCCCCcccceEECC
Confidence 899987764321 122345677889999
Q ss_pred CCCEEEEeeC-CC--eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC---CcEEEEECCCCcEEEEEe
Q 021399 157 LNRTIISAGE-DA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD---KSAKLWDARTLELIKTYV 230 (313)
Q Consensus 157 ~~~~i~t~~~-d~--~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~ 230 (313)
+++.|++++. ++ .|.+||+.+++.. .+. .+...+.+++|+|+|++|++++.+ ..|++||+++++.. .+.
T Consensus 277 dg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~---~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~ 351 (415)
T 2hqs_A 277 DSQNLAFTSDQAGRPQVYKVNINGGAPQ-RIT---WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLS 351 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTSSCCE-ECC---CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECC
T ss_pred CCCEEEEEECCCCCcEEEEEECCCCCEE-EEe---cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Eec
Confidence 9999988876 44 6888899877643 222 355678899999999999998875 58999999998874 444
Q ss_pred cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCC
Q 021399 231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300 (313)
Q Consensus 231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg 300 (313)
....+..++|+|++..++.++.+++ ...+..||.. +.....+.+|.+.|.+++|+|.-
T Consensus 352 ~~~~~~~~~~spdg~~l~~~s~~~~-----------~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 352 STFLDETPSLAPNGTMVIYSSSQGM-----------GSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp CSSSCEEEEECTTSSEEEEEEEETT-----------EEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred CCCCcCCeEEcCCCCEEEEEEcCCC-----------ccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 3447889999999998877654332 1234455543 33445677899999999999974
No 127
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.94 E-value=5.6e-25 Score=189.75 Aligned_cols=229 Identities=13% Similarity=0.142 Sum_probs=160.9
Q ss_pred cceeEEEEccCCCEE-EEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC-eEEE
Q 021399 11 RPLTYLKYNKDGDLL-FSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG-AQLF 88 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l-~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~-~~~~ 88 (313)
..+..+.+.++++.+ ++++.|+.|+|||..+++.+.++. |...|.+++++++. ++. ..|+.|++||+.++ +.+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~~~~~ 134 (355)
T 3vu4_A 59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVV-SYGDVISVFKFGNPWKRIT 134 (355)
T ss_dssp SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEE-EETTEEEEEESSTTCCBSS
T ss_pred CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEE-EEcCEEEEEECCCCceeeE
Confidence 357888999998887 567888999999999999998887 67799999999863 333 34889999999887 4332
Q ss_pred EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCC---------CCCCce-EEEecCCCCceEEEEEccCC
Q 021399 89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPA---------DQGGES-VLILKGPQGRINRAVWGPLN 158 (313)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~~i~~~~~~~~~ 158 (313)
.+.. +...+.+.+ ..+++.+.. ..+.+.++++..... .....+ +..+.+|.+.|.+++|+|++
T Consensus 135 ~~~~--~~~~~~~s~-~~la~~sg~----~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g 207 (355)
T 3vu4_A 135 DDIR--FGGVCEFSN-GLLVYSNEF----NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS 207 (355)
T ss_dssp CCEE--EEEEEEEET-TEEEEEESS----CTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS
T ss_pred Eecc--CCceEEEEc-cEEEEeCCC----cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC
Confidence 2222 233334444 333332111 122334444332110 000012 56788999999999999999
Q ss_pred CEEEEeeCCCe-EEEEECCCCceeeecccccC-ceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEE--E------
Q 021399 159 RTIISAGEDAI-VRIWDTETGKLLKESDKETG-HKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--T------ 228 (313)
Q Consensus 159 ~~i~t~~~d~~-i~lwd~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~--~------ 228 (313)
+++++|+.|++ |++||+++++++..+. .+ |...|.+++|+|++++|++++.|++|++||++...... .
T Consensus 208 ~~l~s~s~d~~~v~iwd~~~~~~~~~~~--~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~ 285 (355)
T 3vu4_A 208 DMVATCSQDGTIIRVFKTEDGVLVREFR--RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWIN 285 (355)
T ss_dssp SEEEEEETTCSEEEEEETTTCCEEEEEE--CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcEEEEEE--cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceee
Confidence 99999999998 9999999998877653 13 88999999999999999999999999999997653111 0
Q ss_pred --------------Eec--CCceeEEEeccCCCEEEEccc
Q 021399 229 --------------YVT--ERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 229 --------------~~~--~~~~~~~~~~p~~~~~~~~~~ 252 (313)
+.. ..+...++|+|++..+++++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~ 325 (355)
T 3vu4_A 286 MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPH 325 (355)
T ss_dssp CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETT
T ss_pred ccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeC
Confidence 000 112366889998887777654
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=1.5e-24 Score=190.86 Aligned_cols=233 Identities=10% Similarity=-0.029 Sum_probs=172.0
Q ss_pred cccccccceeEEEEcc--------------CCCEEEEeeCC------CCeEEEeCCCCcEEEEecCCCCceEEEEECCCC
Q 021399 5 LMKGHERPLTYLKYNK--------------DGDLLFSCAKD------HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS 64 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~--------------~g~~l~s~s~d------~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~ 64 (313)
.+.+|...+..+++++ .+..++.++.+ +.|++||.+. .....+.+|...|.+++|+|+|
T Consensus 112 ~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg 190 (415)
T 2hqs_A 112 SYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDG 190 (415)
T ss_dssp EEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTS
T ss_pred EEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCC
Confidence 4677777777777664 26677777664 7999999874 4567888899999999999999
Q ss_pred CeEEEeeCCC---cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE
Q 021399 65 MTLITGSADQ---TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 141 (313)
Q Consensus 65 ~~l~s~s~D~---~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (313)
+.+++++.|+ .|++||+.+++....
T Consensus 191 ~~la~~s~~~~~~~i~~~d~~tg~~~~l---------------------------------------------------- 218 (415)
T 2hqs_A 191 SKLAYVTFESGRSALVIQTLANGAVRQV---------------------------------------------------- 218 (415)
T ss_dssp SEEEEEECTTSSCEEEEEETTTCCEEEE----------------------------------------------------
T ss_pred CEEEEEEecCCCcEEEEEECCCCcEEEe----------------------------------------------------
Confidence 9999999885 999999987654311
Q ss_pred ecCCCCceEEEEEccCCCEEE-EeeCCC--eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC-CC--cE
Q 021399 142 LKGPQGRINRAVWGPLNRTII-SAGEDA--IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DK--SA 215 (313)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~i~-t~~~d~--~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-dg--~i 215 (313)
..+.+.+..+.|+|+++.++ +++.++ .|++||+.+++.. .+ ..|...+.+++|+|||++|+.++. ++ .|
T Consensus 219 -~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l---~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i 293 (415)
T 2hqs_A 219 -ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QV---TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQV 293 (415)
T ss_dssp -ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EC---CCCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred -ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eC---cCCCCcccceEECCCCCEEEEEECCCCCcEE
Confidence 12334577889999999887 665555 4999999887653 33 246778999999999999998886 44 67
Q ss_pred EEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEE
Q 021399 216 KLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 295 (313)
Q Consensus 216 ~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 295 (313)
.+||+++++..........+..++|+|+++.+++++..++ ...+.+||..+++. ..+..|. .+.+++
T Consensus 294 ~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g-----------~~~i~~~d~~~~~~-~~l~~~~-~~~~~~ 360 (415)
T 2hqs_A 294 YKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGG-----------QQHIAKQDLATGGV-QVLSSTF-LDETPS 360 (415)
T ss_dssp EEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSS-----------CEEEEEEETTTCCE-EECCCSS-SCEEEE
T ss_pred EEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCC-----------ceEEEEEECCCCCE-EEecCCC-CcCCeE
Confidence 7889998875433334556888999999998887654322 22445566554433 2344454 899999
Q ss_pred ECCCCCeeEEEEE
Q 021399 296 FNPDGKRYGFLLL 308 (313)
Q Consensus 296 fspdgk~~~~~~~ 308 (313)
|+|||+.++|...
T Consensus 361 ~spdg~~l~~~s~ 373 (415)
T 2hqs_A 361 LAPNGTMVIYSSS 373 (415)
T ss_dssp ECTTSSEEEEEEE
T ss_pred EcCCCCEEEEEEc
Confidence 9999999887653
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=7.1e-22 Score=179.32 Aligned_cols=280 Identities=11% Similarity=0.092 Sum_probs=191.1
Q ss_pred eeEEEEccCCCEEEEeeCCCCeEEEeC--CCCcEEEEecCCCCceEEEEECC----CCCeEEEee-CCCcEEEEECCCCe
Q 021399 13 LTYLKYNKDGDLLFSCAKDHTPTVWFA--DNGERLGTYRGHNGAVWCCDVSR----DSMTLITGS-ADQTAKLWNVETGA 85 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~d~~i~iw~~--~~~~~~~~~~~H~~~V~~~~~~~----~~~~l~s~s-~D~~v~vWd~~~~~ 85 (313)
+.+++|+|||++|++++.|+.|++||+ .+++.+.++.. ...+..++|+| +|+++++++ .+++|.+||..+++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~ 259 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE 259 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence 889999999999999999999999999 88988888884 45679999999 999998887 58999999999998
Q ss_pred EEEEecCC------------CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399 86 QLFTFNFD------------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (313)
Q Consensus 86 ~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (313)
++..+... ..+..+.+++++...++.... ...+.+++... .....+..+. +...+..+.
T Consensus 260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~----~g~i~vvd~~~----~~~l~~~~i~-~~~~~~~~~ 330 (543)
T 1nir_A 260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE----TGKVLLVNYKD----IDNLTVTSIG-AAPFLHDGG 330 (543)
T ss_dssp EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT----TTEEEEEECTT----SSSCEEEEEE-CCSSCCCEE
T ss_pred cceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC----CCeEEEEEecC----CCcceeEEec-cCcCccCce
Confidence 87766431 134566677644333332211 11111121111 0011111222 344567889
Q ss_pred EccCCCEEEEe-eCCCeEEEEECCCCceeeeccc-ccCceeceEEEEECCC-CCEEEEee-CCCcEEEEECCC-------
Q 021399 154 WGPLNRTIISA-GEDAIVRIWDTETGKLLKESDK-ETGHKKTITSLAKAAD-GSHFLTGS-LDKSAKLWDART------- 222 (313)
Q Consensus 154 ~~~~~~~i~t~-~~d~~i~lwd~~~~~~~~~~~~-~~~h~~~v~~~~~s~~-~~~l~s~s-~dg~i~iwd~~~------- 222 (313)
|+|++++++++ ..+++|.+||..+++++..+.. ...|......+ ++|+ +..++++. .|++|++||+++
T Consensus 331 ~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~ 409 (543)
T 1nir_A 331 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA 409 (543)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTB
T ss_pred ECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhc
Confidence 99999987655 4688999999999988766542 12254434343 4676 66677765 589999999998
Q ss_pred CcEEEEEecC-CceeEEEeccCCCEEEEcc--ccc---CceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEE
Q 021399 223 LELIKTYVTE-RPVNAVTMSPLLDHVVLGG--GQD---ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF 296 (313)
Q Consensus 223 ~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~f 296 (313)
+++++++... .....++++|++..++++. +.+ ...+.++|...++.....++... ...+..|..+|..++|
T Consensus 410 ~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~---~~~~~~~~~~~~~~~~ 486 (543)
T 1nir_A 410 WKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAE---WADLGEGAKRVVQPEY 486 (543)
T ss_dssp TSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHH---HHCCCSSCCEEEEEEE
T ss_pred CeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechh---hcccCCCCCceEeccC
Confidence 8999998754 4568899999999999875 222 33455556544432212222110 0123456789999999
Q ss_pred CCCCCeeEEE
Q 021399 297 NPDGKRYGFL 306 (313)
Q Consensus 297 spdgk~~~~~ 306 (313)
+|||+++.+-
T Consensus 487 ~~~g~~~~~s 496 (543)
T 1nir_A 487 NKRGDEVWFS 496 (543)
T ss_dssp CSSSSEEEEE
T ss_pred CCCCCEEEEE
Confidence 9999997754
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=4.3e-23 Score=187.32 Aligned_cols=264 Identities=11% Similarity=0.069 Sum_probs=188.3
Q ss_pred EEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC--CCCeEEEEecCCC
Q 021399 17 KYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV--ETGAQLFTFNFDS 94 (313)
Q Consensus 17 ~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~--~~~~~~~~~~~~~ 94 (313)
.|+|++..+++++.|++|.+||..+++++.++..+.. +.+++|+|+|+++++++.|++|++||+ .+++.+..+....
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~ 222 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI 222 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC
Confidence 3899999999999999999999999999999984333 899999999999999999999999999 7888877777666
Q ss_pred CeeEEEeec----CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC----------C-CCceEEEEEccCCC
Q 021399 95 PARSVDFAV----GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG----------P-QGRINRAVWGPLNR 159 (313)
Q Consensus 95 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~ 159 (313)
....+.|+| +++.+++... ....+.+++. ...+.+..+.. | ...+..+.++|+++
T Consensus 223 ~p~~va~sp~~~~dg~~l~v~~~----~~~~v~v~D~------~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~ 292 (543)
T 1nir_A 223 EARSVESSKFKGYEDRYTIAGAY----WPPQFAIMDG------ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHP 292 (543)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEE----ESSEEEEEET------TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSS
T ss_pred CcceEEeCCCcCCCCCEEEEEEc----cCCeEEEEec------cccccceeecccCcccCccccccCCceEEEEECCCCC
Confidence 778889998 7766555431 0111112211 11223333322 2 23678899999765
Q ss_pred -EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCcEEEEEecC---Cc
Q 021399 160 -TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVTE---RP 234 (313)
Q Consensus 160 -~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~---~~ 234 (313)
.+++...++.|.+||..+.+.+.... ..+...+..++|+|+|+++++++ .+++|.+||+++++++..+... .+
T Consensus 293 ~~~vs~~~~g~i~vvd~~~~~~l~~~~--i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~ 370 (543)
T 1nir_A 293 EFIVNVKETGKVLLVNYKDIDNLTVTS--IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP 370 (543)
T ss_dssp EEEEEETTTTEEEEEECTTSSSCEEEE--EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCC
T ss_pred EEEEEECCCCeEEEEEecCCCcceeEE--eccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCC
Confidence 45677789999999998765443111 12445678899999999876554 5899999999999998887632 21
Q ss_pred eeEEE-eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhh-------hhhhccccccccceeEEEECCCCCeeEE
Q 021399 235 VNAVT-MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKIL-------QEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 235 ~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
-..+. ++|++..+++++..+... +++||..+ .+.++.+.+|.+.+..++|||||+.+..
T Consensus 371 g~g~~~~~p~~g~~~~s~~~~d~~------------V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v 437 (543)
T 1nir_A 371 GRGANFVHPKYGPVWSTSHLGDGS------------ISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYV 437 (543)
T ss_dssp TTCEEEEETTTEEEEEEEBSSSSE------------EEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEE
T ss_pred CCCcccCCCCCccEEEeccCCCce------------EEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEE
Confidence 12222 467766666654322222 34455444 5666778889899999999999999764
No 131
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.92 E-value=2.4e-22 Score=172.36 Aligned_cols=270 Identities=11% Similarity=0.088 Sum_probs=191.2
Q ss_pred ccceeEEEEccCCCEEEEeeC-------CCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEEC
Q 021399 10 ERPLTYLKYNKDGDLLFSCAK-------DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNV 81 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~-------d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~ 81 (313)
...+..++|+|+|++|+.++. ++.|.+||.++++.+..+... ..+..++|+|+++ ++++...++.|.+||+
T Consensus 40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 446788999999999988874 467999999999988887653 3467889999998 4556666899999999
Q ss_pred CCCeEEEEecCCC----------CeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceE
Q 021399 82 ETGAQLFTFNFDS----------PARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN 150 (313)
Q Consensus 82 ~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (313)
.+++.+..+.... ....+.+++++..+++.. .. ...+..++. ..++.+..+..+...+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~~i~~~d~------~~~~~~~~~~~~~~~~~ 188 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----ESVIWVVDG------GNIKLKTAIQNTGKMST 188 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----SCEEEEEET------TTTEEEEEECCCCTTCC
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----CceEEEEcC------CCCceEEEecCCCCccc
Confidence 9998877665432 146678888765444332 11 111111111 12334444443444577
Q ss_pred EEEEccCCCEEEEeeCCCeEEEEECCCCceeeeccc-ccCceeceEEEEECCCCCEEEEeeC-CCcEEEEECCCCcEEEE
Q 021399 151 RAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK-ETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIKT 228 (313)
Q Consensus 151 ~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd~~~~~~~~~ 228 (313)
.+.|+|+++++++++.++.|.+||..+++....+.. ..++...+..++++|++++++.++. ++.|.+||+++++.+..
T Consensus 189 ~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 268 (353)
T 3vgz_A 189 GLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK 268 (353)
T ss_dssp CCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE
T ss_pred eEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 889999999999999999999999999887665432 2235567888999999998777665 58999999999999888
Q ss_pred EecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 229 YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 229 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
+....+ ..++|+|+++.++++...+ ..+.. ||..+++.+..+.. ...+.+++|+|||+.+.+
T Consensus 269 ~~~~~~-~~~~~s~dg~~l~v~~~~~-~~v~~------------~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v 330 (353)
T 3vgz_A 269 VAAPES-LAVLFNPARNEAYVTHRQA-GKVSV------------IDAKSYKVVKTFDT-PTHPNSLALSADGKTLYV 330 (353)
T ss_dssp EECSSC-CCEEEETTTTEEEEEETTT-TEEEE------------EETTTTEEEEEEEC-CSEEEEEEECTTSCEEEE
T ss_pred EEcCCC-ceEEECCCCCEEEEEECCC-CeEEE------------EECCCCeEEEEEec-CCCCCeEEEcCCCCEEEE
Confidence 765543 6799999999887765433 33444 44444433333332 346799999999997544
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=1.4e-23 Score=175.09 Aligned_cols=244 Identities=13% Similarity=0.109 Sum_probs=171.9
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC-CcEEEEecCCC-CceEEEEECCCCCeEEEee--CCCcEEE
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGHN-GAVWCCDVSRDSMTLITGS--ADQTAKL 78 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~-~~~~~~~~~H~-~~V~~~~~~~~~~~l~s~s--~D~~v~v 78 (313)
++.+..|...|.+++|+|+|++|++++ ++.|++||+++ ++....+.+|. ..|.+++|+|+++.+++++ .++..+|
T Consensus 34 ~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l 112 (297)
T 2ojh_A 34 MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAI 112 (297)
T ss_dssp EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEE
T ss_pred eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceE
Confidence 345677889999999999999999987 78999999999 87776666664 6789999999999999988 4466777
Q ss_pred EECC--CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 79 WNVE--TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 79 Wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
|.++ +++.. .+. +...+..+.|+|
T Consensus 113 ~~~~~~~~~~~-----------------------------------------------------~~~-~~~~~~~~~~sp 138 (297)
T 2ojh_A 113 YLLPSTGGTPR-----------------------------------------------------LMT-KNLPSYWHGWSP 138 (297)
T ss_dssp EEEETTCCCCE-----------------------------------------------------ECC-SSSSEEEEEECT
T ss_pred EEEECCCCceE-----------------------------------------------------Eee-cCCCccceEECC
Confidence 7643 22110 001 112366778999
Q ss_pred CCCEEE-EeeCCCeEEEEEC--CCCceeeecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECC-CCcEEEEEe-
Q 021399 157 LNRTII-SAGEDAIVRIWDT--ETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDAR-TLELIKTYV- 230 (313)
Q Consensus 157 ~~~~i~-t~~~d~~i~lwd~--~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~-~~~~~~~~~- 230 (313)
+++.++ +++.++.++||++ ..+.. ..+ ..+...+.+++|+|+++.|+.++ .|+.+++|+++ .+..+..+.
T Consensus 139 dg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 214 (297)
T 2ojh_A 139 DGKSFTYCGIRDQVFDIYSMDIDSGVE-TRL---THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD 214 (297)
T ss_dssp TSSEEEEEEEETTEEEEEEEETTTCCE-EEC---CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC
T ss_pred CCCEEEEEECCCCceEEEEEECCCCcc-eEc---ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec
Confidence 999877 7788999999985 33332 222 24667899999999999888766 58999999876 444555554
Q ss_pred cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh--hccccccccceeEEEECCCCCeeEEEEE
Q 021399 231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE--IGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
+...+..++|+|++..+++++..+.... ....+...+.+||..+++. +..+.+|...|..++|+|||+.+++...
T Consensus 215 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~---~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 215 SAYGDWFPHPSPSGDKVVFVSYDADVFD---HPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp CSEEEEEEEECTTSSEEEEEEEETTCCS---CCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEE
T ss_pred CCcccCCeEECCCCCEEEEEEcCCCCCc---ccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEe
Confidence 3446788999999998887654422100 0000112345555544332 2334478889999999999999988653
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=2.2e-23 Score=196.41 Aligned_cols=269 Identities=11% Similarity=-0.002 Sum_probs=187.7
Q ss_pred ccceeEEEEccCCCEEEEeeC-CC-----CeEEEeCCCCcEEEEecCCCC------------------------ceEEEE
Q 021399 10 ERPLTYLKYNKDGDLLFSCAK-DH-----TPTVWFADNGERLGTYRGHNG------------------------AVWCCD 59 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~-d~-----~i~iw~~~~~~~~~~~~~H~~------------------------~V~~~~ 59 (313)
...+.+++|||||++|++++. |+ .|++||+++++....+..|.. .|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 346889999999999999998 88 899999999987776665433 388999
Q ss_pred ECCCCCeEEEeeCCCcEEEEECCCC---eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCC
Q 021399 60 VSRDSMTLITGSADQTAKLWNVETG---AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 136 (313)
Q Consensus 60 ~~~~~~~l~s~s~D~~v~vWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (313)
|+|||+.+++++. +.|++||+.++ +..........+..+.|+|+++.++...+. .+.++++. ++
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~------~i~~~d~~------~g 182 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGR------NLWVIDLA------SG 182 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETT------EEEEEETT------TT
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCC------cEEEEecC------CC
Confidence 9999999998886 99999999887 544333344567888999988766554432 12222211 11
Q ss_pred ceEEEecCCCC----------------ceEEEEEccCCCEEEEeeCCC--------------------------------
Q 021399 137 ESVLILKGPQG----------------RINRAVWGPLNRTIISAGEDA-------------------------------- 168 (313)
Q Consensus 137 ~~~~~~~~~~~----------------~i~~~~~~~~~~~i~t~~~d~-------------------------------- 168 (313)
........+.. .+..+.|+|+|++|++++.|+
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 12211122222 146789999999999987765
Q ss_pred -eEEEEECCC-CceeeecccccCceeceEEEEECCCCCEEEEeeC-----CCcEEEEECCCCcEEEEEecCC-----cee
Q 021399 169 -IVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-----DKSAKLWDARTLELIKTYVTER-----PVN 236 (313)
Q Consensus 169 -~i~lwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~-----~~~ 236 (313)
.|++||+.+ ++.... .....|...+..++| |||++|+.++. +..|++||++++++...+.... .+.
T Consensus 263 ~~l~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~ 340 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWI-DLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN 340 (741)
T ss_dssp EEEEEECSSTTCCCEEE-CCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred eEEEEEECCCCCceEEe-cCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence 889999987 765432 221247788999999 99999997764 5689999999998776654322 346
Q ss_pred EEEeccCCCEEEEcccccC-ceeEeeccCCCceeeeeeehhhhhhhccccccccceeEE-EECCCCCeeEEEEE
Q 021399 237 AVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL-AFNPDGKRYGFLLL 308 (313)
Q Consensus 237 ~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~-~fspdgk~~~~~~~ 308 (313)
.++|+|++..++++ ..++ ..++. ++.. +. ...+..|...|..+ +|||||+.++|...
T Consensus 341 ~~~~spdg~~~~~~-~~~g~~~l~~------------~~~~-~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~ 399 (741)
T 2ecf_A 341 SLRFLDDGSILWSS-ERTGFQHLYR------------IDSK-GK-AAALTHGNWSVDELLAVDEKAGLAYFRAG 399 (741)
T ss_dssp CCEECTTSCEEEEE-CTTSSCEEEE------------ECSS-SC-EEESCCSSSCEEEEEEEETTTTEEEEEEC
T ss_pred ceEECCCCeEEEEe-cCCCccEEEE------------EcCC-CC-eeeeeecceEEEeEeEEeCCCCEEEEEEe
Confidence 89999999844443 3332 22322 2221 12 34456677788887 59999999887653
No 134
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=3.3e-23 Score=194.65 Aligned_cols=277 Identities=12% Similarity=0.038 Sum_probs=181.0
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCC---ceEEEEECCCCCeEEEeeCC---------CcEEEE
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG---AVWCCDVSRDSMTLITGSAD---------QTAKLW 79 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~---~V~~~~~~~~~~~l~s~s~D---------~~v~vW 79 (313)
.+.+++|+|||+++++ +.|+.|++||.++++....+.+|.. .|.+++|||||+.+++++.+ +.+.+|
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~ 96 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS 96 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence 3678999999998776 7899999999999988888887775 49999999999999998875 678899
Q ss_pred ECCCCeEEEEecCC---CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC---------
Q 021399 80 NVETGAQLFTFNFD---SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG--------- 147 (313)
Q Consensus 80 d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 147 (313)
|+.+++........ ..+..+.|+|+++.++...+. .+.++++. ++........+..
T Consensus 97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~------~i~~~~~~------~g~~~~~~~~~~~~~~~~g~~~ 164 (723)
T 1xfd_A 97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN------NIYYCAHV------GKQAIRVVSTGKEGVIYNGLSD 164 (723)
T ss_dssp ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETT------EEEEESSS------SSCCEEEECCCBTTTEEEEECC
T ss_pred ECCCCceEeccCCccccccccccEECCCCCEEEEEECC------eEEEEECC------CCceEEEecCCCCCceECcccc
Confidence 99988753222211 125667889877655544331 11222111 1222222222222
Q ss_pred ---------ceEEEEEccCCCEEEEeeCCC----------------------------------eEEEEECCCCceeeec
Q 021399 148 ---------RINRAVWGPLNRTIISAGEDA----------------------------------IVRIWDTETGKLLKES 184 (313)
Q Consensus 148 ---------~i~~~~~~~~~~~i~t~~~d~----------------------------------~i~lwd~~~~~~~~~~ 184 (313)
.+..+.|+|+|+.|++++.|+ .|++||+.+++....+
T Consensus 165 ~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 165 WLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp HHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEEC
T ss_pred eeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEe
Confidence 236899999999999987553 7999999887653333
Q ss_pred ccc---cCceeceEEEEECCCCCEEEEeeC----CCcEEEEECCCCcEEEEEec--CCce----eEEEeccCCCEEEEcc
Q 021399 185 DKE---TGHKKTITSLAKAADGSHFLTGSL----DKSAKLWDARTLELIKTYVT--ERPV----NAVTMSPLLDHVVLGG 251 (313)
Q Consensus 185 ~~~---~~h~~~v~~~~~s~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~--~~~~----~~~~~~p~~~~~~~~~ 251 (313)
... ..+...+..++|+|||++|++.+. +..|++||++++++...+.. ...+ ..++|+|+++.+++.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 324 (723)
T 1xfd_A 245 MPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIR 324 (723)
T ss_dssp CCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEE
T ss_pred eCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEE
Confidence 211 123678899999999998877653 35799999999987665432 2223 3789999999887652
Q ss_pred cccCceeEeeccCCCceeeeeee-hhhhh--hhcccccccccee-EEEECCCCCeeEEEE
Q 021399 252 GQDASAVTTTDHRAGKFEAKFFD-KILQE--EIGGVKGHFGPIN-ALAFNPDGKRYGFLL 307 (313)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~h~~~V~-~~~fspdgk~~~~~~ 307 (313)
+..... ......+..|| ...++ +...+..+...+. .++|||||+.++|..
T Consensus 325 ~~~~~~------~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~ 378 (723)
T 1xfd_A 325 AIPQGG------RGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLS 378 (723)
T ss_dssp EECCSS------SSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEE
T ss_pred ecccCC------CcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEE
Confidence 222210 00011234444 22222 0233332333444 479999999998865
No 135
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=1.9e-21 Score=165.54 Aligned_cols=274 Identities=12% Similarity=0.051 Sum_probs=176.0
Q ss_pred EEEccCCCE-EEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee-CCCcEEEEECCCCeE-EEEecC
Q 021399 16 LKYNKDGDL-LFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWNVETGAQ-LFTFNF 92 (313)
Q Consensus 16 ~~fs~~g~~-l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~v~vWd~~~~~~-~~~~~~ 92 (313)
..|++++++ +++.+.++.|++||.++++.+..+..+...+ +++|+|+++.++.++ .++.|.+||+.+++. ......
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 346666655 7777889999999999999988888777777 999999998665555 489999999998876 555544
Q ss_pred CCCeeE-EEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE-eeCCCe-
Q 021399 93 DSPARS-VDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS-AGEDAI- 169 (313)
Q Consensus 93 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t-~~~d~~- 169 (313)
...... +.++++++.+++....-. ...+.++++ ..++.+..+.. ......+.|+|+++++++ ...++.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~--~~~i~v~d~------~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~ 152 (331)
T 3u4y_A 82 GQSSMADVDITPDDQFAVTVTGLNH--PFNMQSYSF------LKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANT 152 (331)
T ss_dssp CSSCCCCEEECTTSSEEEECCCSSS--SCEEEEEET------TTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTE
T ss_pred CCCCccceEECCCCCEEEEecCCCC--cccEEEEEC------CCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCce
Confidence 444444 888988776664332100 001222222 12233333333 334588999999985554 455578
Q ss_pred EEEEECCCCceeeec-ccccCceeceEEEEECCCCCEEEE-eeCCCcEEEEECCCCcE---EEEEecCCceeEEEeccCC
Q 021399 170 VRIWDTETGKLLKES-DKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLEL---IKTYVTERPVNAVTMSPLL 244 (313)
Q Consensus 170 i~lwd~~~~~~~~~~-~~~~~h~~~v~~~~~s~~~~~l~s-~s~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~p~~ 244 (313)
|.+|++.....+... ............++|+|+|++++. +..++.|++||+++++. +..+.....+..++|+|++
T Consensus 153 i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg 232 (331)
T 3u4y_A 153 VRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDG 232 (331)
T ss_dssp EEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTS
T ss_pred EEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCC
Confidence 999998653332111 111123345789999999996655 45689999999999888 7777777778899999999
Q ss_pred CEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccccc---ceeEEEECCCCCeeEEE
Q 021399 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFG---PINALAFNPDGKRYGFL 306 (313)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~fspdgk~~~~~ 306 (313)
..++++...+ ..+..+|...++....- .. ...+..+.. ....++|+|||+++.+.
T Consensus 233 ~~l~v~~~~~-~~i~~~d~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 290 (331)
T 3u4y_A 233 STVYVLTEST-VDVFNFNQLSGTLSFVK-SF-----GHGLLIDPRPLFGANQMALNKTETKLFIS 290 (331)
T ss_dssp SEEEEECSSE-EEEEEEETTTTEEEEEE-EE-----ECCCCCCCGGGTTCCCEEECTTSSEEEEE
T ss_pred CEEEEEEcCC-CEEEEEECCCCceeeec-cc-----ccccccCCCCcccccceEECCCCCEEEEe
Confidence 9887765433 33555665554431100 00 001111122 22568999999987543
No 136
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=2.6e-21 Score=165.05 Aligned_cols=277 Identities=9% Similarity=0.057 Sum_probs=173.6
Q ss_pred cccccceeEEEEccCCCEEEEeeCC-CCeEEEeCC--CCc--EEEEecCCCCceEEEEECCCCCeEEEee-CCCcEEEEE
Q 021399 7 KGHERPLTYLKYNKDGDLLFSCAKD-HTPTVWFAD--NGE--RLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLWN 80 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s~s~d-~~i~iw~~~--~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~v~vWd 80 (313)
..|...+.+++|+|+|++|++++.+ +.|++|+++ +++ .+..+..+. .+..++|+|+++.+++++ .++.|++||
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d 112 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTR 112 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEE
Confidence 4567788999999999999998887 999999987 554 345555544 788999999999776665 488999999
Q ss_pred CC---CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEE--EecC-CCCceEEEEE
Q 021399 81 VE---TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL--ILKG-PQGRINRAVW 154 (313)
Q Consensus 81 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~i~~~~~ 154 (313)
+. ..+.+........+..+.|++++..+++... ....+.++++..+ ....... .... ....+..+.|
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~----~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 185 (343)
T 1ri6_A 113 LEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL----KQDRICLFTVSDD---GHLVAQDPAEVTTVEGAGPRHMVF 185 (343)
T ss_dssp EETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG----GGTEEEEEEECTT---SCEEEEEEEEEECSTTCCEEEEEE
T ss_pred CCCCccccccccccCCCCceEEEECCCCCEEEEecC----CCCEEEEEEecCC---CceeeecccccccCCCCCcceEEE
Confidence 94 3334444444456777888887764444321 1122333333210 0011111 2222 2346778999
Q ss_pred ccCCCEEEEe-eCCCeEEEEECCC--Cce--eeeccc-ccC--ceeceEEEEECCCCCEEE-EeeCCCcEEEEECC----
Q 021399 155 GPLNRTIISA-GEDAIVRIWDTET--GKL--LKESDK-ETG--HKKTITSLAKAADGSHFL-TGSLDKSAKLWDAR---- 221 (313)
Q Consensus 155 ~~~~~~i~t~-~~d~~i~lwd~~~--~~~--~~~~~~-~~~--h~~~v~~~~~s~~~~~l~-s~s~dg~i~iwd~~---- 221 (313)
+|++++++.+ ..++.|++||+.. ++. ...... ..+ ....+.+++|+|+|++|+ ++..|+.|++||++
T Consensus 186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~ 265 (343)
T 1ri6_A 186 HPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGS 265 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSC
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCC
Confidence 9999976555 4889999999853 332 111111 111 134577899999999877 45579999999998
Q ss_pred CCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEee--ccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399 222 TLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTT--DHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (313)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd 299 (313)
+.+.+..+.....+..++|+|+++.+++++..+ ..+.+| |...+.++. +..+.. .....+++|.|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~~v~v~~~d~~~g~~~~----------~~~~~~-g~~p~~i~~~~~ 333 (343)
T 1ri6_A 266 VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKS-HHISVYEIVGEQGLLHE----------KGRYAV-GQGPMWVVVNAH 333 (343)
T ss_dssp CEEEEEEEECSSSCCCEEECTTSSEEEEECTTT-CEEEEEEEETTTTEEEE----------EEEEEC-SSSCCEEEEEEE
T ss_pred ceEEeeeecCCCccceEEECCCCCEEEEecCCC-CeEEEEEEcCCCceeeE----------cccccc-CCCCeeEEEEcc
Confidence 334555555444588999999999888876433 233333 333333211 111211 234567888888
Q ss_pred CCee
Q 021399 300 GKRY 303 (313)
Q Consensus 300 gk~~ 303 (313)
.++.
T Consensus 334 ~~~~ 337 (343)
T 1ri6_A 334 EGGS 337 (343)
T ss_dssp C---
T ss_pred cCCc
Confidence 7653
No 137
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=1.2e-21 Score=184.56 Aligned_cols=274 Identities=10% Similarity=0.038 Sum_probs=182.3
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~ 89 (313)
.+.+++|||||++|++++. +.|++||+.+++ ....+..|...+..++|+|||+.++.++ ++.|++||+.+++....
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence 4789999999999999987 999999999883 4456778888999999999999998877 56999999998876544
Q ss_pred ecCCCC-----------------eeEEEeecCCeEEEEE-CCCc-eec------------------------cccceeee
Q 021399 90 FNFDSP-----------------ARSVDFAVGDKLAVIT-TDPF-MEL------------------------NSAIHVKR 126 (313)
Q Consensus 90 ~~~~~~-----------------~~~~~~~~~~~~~~~~-~~~~-~~~------------------------~~~~~~~~ 126 (313)
...... ...+.|+|+++.++.. .+.. ... .....++.
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~ 267 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGV 267 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEE
Confidence 332221 3567899877654443 2210 000 00001110
Q ss_pred eeeCCCCCC-CceEEEec--CCCCceEEEEEccCCCEEEEeeC-----CCeEEEEECCCCceeeecccccCcee----ce
Q 021399 127 IARDPADQG-GESVLILK--GPQGRINRAVWGPLNRTIISAGE-----DAIVRIWDTETGKLLKESDKETGHKK----TI 194 (313)
Q Consensus 127 ~~~~~~~~~-~~~~~~~~--~~~~~i~~~~~~~~~~~i~t~~~-----d~~i~lwd~~~~~~~~~~~~~~~h~~----~v 194 (313)
.+. .+ +....... .+...+..+.| |+++.|+.++. +..|++||+.+++....... +.. .+
T Consensus 268 --~d~--~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~---~~~~~~~~~ 339 (741)
T 2ecf_A 268 --ISP--AEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHE---TSPTWVPLH 339 (741)
T ss_dssp --ECS--STTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEE---ECSSCCCCC
T ss_pred --EEC--CCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEc---CCCCcCCcC
Confidence 011 11 12222221 35667889999 99999987653 67899999998876543321 221 34
Q ss_pred EEEEECCCCCEEEEeeCCCcEEEEECC-CCcEEEEEec-CCceeEE-EeccCCCEEEEcccccCceeEeeccCCCceeee
Q 021399 195 TSLAKAADGSHFLTGSLDKSAKLWDAR-TLELIKTYVT-ERPVNAV-TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAK 271 (313)
Q Consensus 195 ~~~~~s~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~-~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (313)
..++|+|||+++++++.||.++||.++ ++. ...+.. ...+..+ +|+|+++.+++++..+.. ..++
T Consensus 340 ~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~-----------~~~~ 407 (741)
T 2ecf_A 340 NSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESA-----------RESQ 407 (741)
T ss_dssp SCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCT-----------TCBE
T ss_pred CceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCC-----------ceEE
Confidence 678999999999999999988888765 344 555543 4456666 599999988776554321 1123
Q ss_pred eeehhh-hhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 272 FFDKIL-QEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 272 ~~~~~~-~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
+|+... +.....+.. ...+..++|||||+++++...
T Consensus 408 l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~ 444 (741)
T 2ecf_A 408 IYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWS 444 (741)
T ss_dssp EEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEE
T ss_pred EEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEec
Confidence 343321 222233433 567889999999999988754
No 138
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.89 E-value=2e-22 Score=178.12 Aligned_cols=196 Identities=12% Similarity=0.106 Sum_probs=143.8
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCC----------cEEE-----EecCCCCceEEEEECCCCCeEE----Ee
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNG----------ERLG-----TYRGHNGAVWCCDVSRDSMTLI----TG 70 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~----------~~~~-----~~~~H~~~V~~~~~~~~~~~l~----s~ 70 (313)
...+..+++++++.++++++.|+ ++||+.... ..+. ..-.|.+.|.+++|+|++++|+ +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence 34578999999999999999988 888864311 0111 1123567899999999999998 89
Q ss_pred eCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceE
Q 021399 71 SADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN 150 (313)
Q Consensus 71 s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (313)
+.|++|++||+.++.. ..... .........+.+|...|.
T Consensus 115 s~d~~v~iwd~~~~~~----~~~~~-------------------------------------~~~~~~~~~~~~h~~~V~ 153 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSN----EAKQQ-------------------------------------KRPFAYHKLLKDAGGMVI 153 (434)
T ss_dssp TTEEEEEEEEHHHHHC----TTCSS-------------------------------------CCCSEEEECCCSGGGSEE
T ss_pred CCCceEEEEEcccccc----CCcCC-------------------------------------cceeeeeeccCCCCCceE
Confidence 9999999999865310 00000 000011223456788999
Q ss_pred EEEEccC-CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE
Q 021399 151 RAVWGPL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (313)
Q Consensus 151 ~~~~~~~-~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (313)
+++|+|. +..+++++.|++|++||++++..+... .+|...+++++|+|+|++|++|+.||+|++||++ ++....+
T Consensus 154 ~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~---~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~ 229 (434)
T 2oit_A 154 DMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT---LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVI 229 (434)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE---ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEE
T ss_pred EEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec---cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccccc
Confidence 9999998 789999999999999999887554322 3588899999999999999999999999999998 5555554
Q ss_pred ecC--------CceeEEEeccCCCEEEEcc
Q 021399 230 VTE--------RPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 230 ~~~--------~~~~~~~~~p~~~~~~~~~ 251 (313)
... ..+.+++|++.+..+++..
T Consensus 230 ~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~ 259 (434)
T 2oit_A 230 PCPPFYESDHPVRVLDVLWIGTYVFAIVYA 259 (434)
T ss_dssp CCCTTCCTTSCEEEEEEEEEETTEEEEEEE
T ss_pred cCCcccCCCCceeEEEEEEecCceEEEEEc
Confidence 321 1678899998776654433
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=9.8e-21 Score=177.41 Aligned_cols=273 Identities=11% Similarity=0.057 Sum_probs=181.4
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC-----Ce
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-----GA 85 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~-----~~ 85 (313)
..|.+++|||| ++++.+ .|+.+++||+.+++.. .+..|...+.+++|+|||+.++. +.|+.|++||+.+ ++
T Consensus 82 ~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~~~~~~g~ 157 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLF-TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAY-VRNHNLYIARGGKLGEGMSR 157 (706)
T ss_dssp CCCEEEEETTT-TEEEEE-ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEE-EETTEEEEEECBCTTSCCCC
T ss_pred cCceeEEECCC-CeEEEE-ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEE-EECCeEEEEecCcccccCCC
Confidence 56999999999 666555 4599999999888654 45556778889999999999888 4789999999988 76
Q ss_pred EEEEecCCCC---------------eeEEEeecCCeEEEEEC-CCc----ee-----------------------ccccc
Q 021399 86 QLFTFNFDSP---------------ARSVDFAVGDKLAVITT-DPF----ME-----------------------LNSAI 122 (313)
Q Consensus 86 ~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~-~~~----~~-----------------------~~~~~ 122 (313)
.......... ...+.|+|+++.++... +.. .. ....+
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 5543332222 36788999877655543 100 00 00001
Q ss_pred eeeeeeeCCCCCCCceEEEe--cCCCCceEEEEEccCCCEEEEeeCCC-----eEEEEECCCCceeeecccc--cCceec
Q 021399 123 HVKRIARDPADQGGESVLIL--KGPQGRINRAVWGPLNRTIISAGEDA-----IVRIWDTETGKLLKESDKE--TGHKKT 193 (313)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~i~t~~~d~-----~i~lwd~~~~~~~~~~~~~--~~h~~~ 193 (313)
.++++ .++...... ..+...+..+.|+|+++.+++++.++ .|++||+.+++....+... ......
T Consensus 238 ~~~d~------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 238 GIYHL------ATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp EEEET------TTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred EEEEC------CCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 11111 112211111 13556788999999999999887665 8999999988433332211 111112
Q ss_pred eEEEEECC--CCCEEEEeeCCCcEEEEECC-CCcEEEEEec-CCceeE-EEeccCCCEEEEcccccC---ceeEeeccCC
Q 021399 194 ITSLAKAA--DGSHFLTGSLDKSAKLWDAR-TLELIKTYVT-ERPVNA-VTMSPLLDHVVLGGGQDA---SAVTTTDHRA 265 (313)
Q Consensus 194 v~~~~~s~--~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~-~~~~~~-~~~~p~~~~~~~~~~~~~---~~~~~~~~~~ 265 (313)
+.+++|+| ||+++++++.|+.+++|+++ ++..+..+.. ...+.. ++|+|+++.+++++..+. ..++.
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~----- 386 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYC----- 386 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE-----
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE-----
Confidence 46789999 99999999999999999876 5666666643 334555 799999998887765443 23333
Q ss_pred CceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399 266 GKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~ 307 (313)
||..+++ ...+ .|...+.+++|||||+++++..
T Consensus 387 -------~d~~~~~-~~~l-~~~~~~~~~~~spdg~~l~~~~ 419 (706)
T 2z3z_A 387 -------IDIKGGK-TKDL-TPESGMHRTQLSPDGSAIIDIF 419 (706)
T ss_dssp -------EETTCCC-CEES-CCSSSEEEEEECTTSSEEEEEE
T ss_pred -------EEcCCCC-ceec-cCCCceEEEEECCCCCEEEEEe
Confidence 3333222 1222 3667899999999999988764
No 140
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=7.3e-21 Score=185.61 Aligned_cols=276 Identities=14% Similarity=0.106 Sum_probs=196.7
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCC-CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~-~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
.+.+|...+.++.|+++ ..+++++.|+.++||..+. +.....+..|. .+...+|+|||+.++.+ .++.|.+||+..
T Consensus 198 ~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~i~~~d~~~ 274 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFS-KGGSIYIFNPDT 274 (1045)
T ss_dssp EEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEE-ETTEEEEECTTT
T ss_pred ECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEE-eCCEEEEecCCc
Confidence 45789999999999988 6777888899999997653 44455666665 46677999999988886 589999999955
Q ss_pred CeEEEEecCC------------CCeeEEEee-cCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC-ce
Q 021399 84 GAQLFTFNFD------------SPARSVDFA-VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG-RI 149 (313)
Q Consensus 84 ~~~~~~~~~~------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i 149 (313)
.... .+... ..+..+.|+ |+++.++..... .+..++. ..+ ....+..+.. .+
T Consensus 275 ~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~------~i~~~~~------~~~-~~~~~~~~~~~~~ 340 (1045)
T 1k32_A 275 EKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRG------QAFIQDV------SGT-YVLKVPEPLRIRY 340 (1045)
T ss_dssp CCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETT------EEEEECT------TSS-BEEECSCCSCEEE
T ss_pred eEee-eeccCcccccccccccccccceeeecCCCCCEEEEEEcC------EEEEEcC------CCC-ceEEccCCCcceE
Confidence 4433 33221 146788898 876644443321 1111111 111 2333555666 78
Q ss_pred EEEEEccCCCEEEEeeCCCeEE-EEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEE
Q 021399 150 NRAVWGPLNRTIISAGEDAIVR-IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228 (313)
Q Consensus 150 ~~~~~~~~~~~i~t~~~d~~i~-lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 228 (313)
..+.|+ +++.++.++.+..+. +||+..++.. .+. +|...+..++|+|||++|++++.++.|++||+++++....
T Consensus 341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~---~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~ 415 (1045)
T 1k32_A 341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE---ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 415 (1045)
T ss_dssp EEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECC---CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Eec---CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe
Confidence 899999 999999999888888 9998876543 222 5778899999999999999999999999999999988766
Q ss_pred E-ecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399 229 Y-VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 229 ~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~ 307 (313)
. .+...+..++|+|++..++.++...+... .......+++||..+++ +..+..|...+..++|+|||++++|..
T Consensus 416 ~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~----~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s 490 (1045)
T 1k32_A 416 ERSREAMITDFTISDNSRFIAYGFPLKHGET----DGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLS 490 (1045)
T ss_dssp EECSSSCCCCEEECTTSCEEEEEEEECSSTT----CSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred ccCCCCCccceEECCCCCeEEEEecCccccc----cCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEe
Confidence 6 34556789999999998877643220000 00012245667766554 455667888899999999999998764
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=2.7e-20 Score=158.38 Aligned_cols=243 Identities=9% Similarity=0.034 Sum_probs=166.6
Q ss_pred ccccceeEEEEccCCCEEEEeeC-CCCeEEEeCCCCcE-EEEecCCCCceEEEEECCCCCeEEEeeCCC---cEEEEECC
Q 021399 8 GHERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSMTLITGSADQ---TAKLWNVE 82 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~s~s~-d~~i~iw~~~~~~~-~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~---~v~vWd~~ 82 (313)
.+...+ +++|+|+|++|+.++. ++.|.+||.++++. ...+..+..+..+++|+|++++++++..++ .|++||+.
T Consensus 38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~ 116 (331)
T 3u4y_A 38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL 116 (331)
T ss_dssp CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT
T ss_pred ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC
Confidence 345556 9999999997777665 89999999999987 777877777777699999999888655553 89999999
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEE-EEECCCceecccc-ceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLA-VITTDPFMELNSA-IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (313)
+++.+..+........+.|+|+++.+ +.... ... +..+++..+....... ...+ ........+.|+|++++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-----~~~~i~~~~~~~~g~~~~~~-~~~~-~~~~~~~~~~~spdg~~ 189 (331)
T 3u4y_A 117 KNKFISTIPIPYDAVGIAISPNGNGLILIDRS-----SANTVRRFKIDADGVLFDTG-QEFI-SGGTRPFNITFTPDGNF 189 (331)
T ss_dssp TTEEEEEEECCTTEEEEEECTTSSCEEEEEET-----TTTEEEEEEECTTCCEEEEE-EEEE-CSSSSEEEEEECTTSSE
T ss_pred CCCeEEEEECCCCccceEECCCCCEEEEEecC-----CCceEEEEEECCCCcEeecC-Cccc-cCCCCccceEECCCCCE
Confidence 99888777766677889999987533 33222 111 2223322100000000 1111 22345688999999986
Q ss_pred EE-EeeCCCeEEEEECCCCce---eeecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCcE--EEEEecC-
Q 021399 161 II-SAGEDAIVRIWDTETGKL---LKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLEL--IKTYVTE- 232 (313)
Q Consensus 161 i~-t~~~d~~i~lwd~~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~--~~~~~~~- 232 (313)
++ ++..++.|++||+.+++. +..+. ....+..++|+|||++++.++ .++.|.+||+++++. +..+...
T Consensus 190 l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 265 (331)
T 3u4y_A 190 AFVANLIGNSIGILETQNPENITLLNAVG----TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGL 265 (331)
T ss_dssp EEEEETTTTEEEEEECSSTTSCEEEEEEE----CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCC
T ss_pred EEEEeCCCCeEEEEECCCCcccceeeecc----CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccccccc
Confidence 54 455789999999998877 54443 235678899999999776554 578899999999877 4443321
Q ss_pred ----Cc---eeEEEeccCCCEEEEcccccCceeEeecc
Q 021399 233 ----RP---VNAVTMSPLLDHVVLGGGQDASAVTTTDH 263 (313)
Q Consensus 233 ----~~---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (313)
.+ .+.++|+|++..+++++.. .+.+.+||.
T Consensus 266 ~~~~~~~~~~~~~~~spdg~~l~v~~~~-~~~v~v~d~ 302 (331)
T 3u4y_A 266 LIDPRPLFGANQMALNKTETKLFISANI-SRELKVFTI 302 (331)
T ss_dssp CCCCGGGTTCCCEEECTTSSEEEEEETT-TTEEEEEET
T ss_pred ccCCCCcccccceEECCCCCEEEEecCC-CCcEEEEEe
Confidence 11 2458999999998876543 333444443
No 142
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=3e-21 Score=177.09 Aligned_cols=254 Identities=13% Similarity=0.070 Sum_probs=168.6
Q ss_pred ccceeEEEEccCCCEEEEeeC-CCCeEEEeCCCCcEEEEecCCC-CceEEEEECCCCCeEEEeeC---CCcEEEEECCC-
Q 021399 10 ERPLTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSA---DQTAKLWNVET- 83 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~-d~~i~iw~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l~s~s~---D~~v~vWd~~~- 83 (313)
..+|++++|+|||++|++++. |++++||++++++. ..+..|. ..|.+++|+|| +++++++. +...++|.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~ 98 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS 98 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence 457999999999999999987 99999999866655 4555555 68999999999 78887775 55566765432
Q ss_pred --CeEEEEecCCCCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399 84 --GAQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 84 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (313)
+... .+..........|+++.+ ++++.... ....++++. ++........ .. .++.|+|+|+.
T Consensus 99 ~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~-----~~~~l~d~~------~g~~~~l~~~-~~--~~~~~spDG~~ 163 (582)
T 3o4h_A 99 RPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATE-----DRVALYALD------GGGLRELARL-PG--FGFVSDIRGDL 163 (582)
T ss_dssp STTCCE-ECTTSCSBEEEEEEECSSCEEEEEECS-----SCEEEEEEE------TTEEEEEEEE-SS--CEEEEEEETTE
T ss_pred CCCccc-cccCCCCceeeeeCCCCCeEEEEecCC-----CCceEEEcc------CCcEEEeecC-CC--ceEEECCCCCE
Confidence 2222 333233344556776543 33322111 111133322 1222222222 22 78899999999
Q ss_pred EEEeeCC----CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC--cEEEEECCCCcEEEEEe-cCC
Q 021399 161 IISAGED----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK--SAKLWDARTLELIKTYV-TER 233 (313)
Q Consensus 161 i~t~~~d----~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~-~~~ 233 (313)
+++++.+ ..|++||+.+++.. .+ ..|...+..++|+|||+.|+++..++ .|++||++++++. .+. +..
T Consensus 164 la~~~~~~~~~~~i~~~d~~~g~~~-~l---~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~ 238 (582)
T 3o4h_A 164 IAGLGFFGGGRVSLFTSNLSSGGLR-VF---DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSK 238 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCCE-EE---CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCS
T ss_pred EEEEEEcCCCCeEEEEEcCCCCCce-Ee---ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCc
Confidence 9988877 78999999887653 23 35677889999999999999888898 8999999998877 433 233
Q ss_pred ceeEEE--------eccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 234 PVNAVT--------MSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 234 ~~~~~~--------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
.+..++ |+|++ .+++++..++ . .++|+. ++... .+.+.|.+++|+ ||+.+..
T Consensus 239 ~~~~~~~~~~~~~~~spdg-~~~~~~~~~g-~------------~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~ 298 (582)
T 3o4h_A 239 DFSSYRPTAITWLGYLPDG-RLAVVARREG-R------------SAVFID--GERVE---APQGNHGRVVLW-RGKLVTS 298 (582)
T ss_dssp HHHHHCCSEEEEEEECTTS-CEEEEEEETT-E------------EEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEE
T ss_pred ChhhhhhccccceeEcCCC-cEEEEEEcCC-c------------EEEEEE--CCeec---cCCCceEEEEec-CCEEEEE
Confidence 455556 99999 5555544332 2 334444 32222 234678999999 9987643
No 143
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=1.8e-20 Score=182.89 Aligned_cols=279 Identities=11% Similarity=-0.019 Sum_probs=184.8
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCC------CCeEEEeCCCCcEEEEecCCCCce-------EEEEECCCCCeEEE
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKD------HTPTVWFADNGERLGTYRGHNGAV-------WCCDVSRDSMTLIT 69 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d------~~i~iw~~~~~~~~~~~~~H~~~V-------~~~~~~~~~~~l~s 69 (313)
++.|.+|...+.+++|||||++|++++.+ ..|++|+.++++ ...+..|...+ .+++|+|||+++++
T Consensus 45 ~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~ 123 (1045)
T 1k32_A 45 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDPDGNLIIS 123 (1045)
T ss_dssp EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE-EEECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred EEEeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC-eEEcccCCCcccccccccccccCCCCCEEEEE
Confidence 56778899999999999999999988654 479999998876 57888999888 99999999998888
Q ss_pred eeCC------CcEEEEECCCCeEEEEecC--------------------------------------------------C
Q 021399 70 GSAD------QTAKLWNVETGAQLFTFNF--------------------------------------------------D 93 (313)
Q Consensus 70 ~s~D------~~v~vWd~~~~~~~~~~~~--------------------------------------------------~ 93 (313)
++.+ ..+.+||+.+++....... .
T Consensus 124 ~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~ 203 (1045)
T 1k32_A 124 TDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS 203 (1045)
T ss_dssp ECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS
T ss_pred ECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC
Confidence 7755 3577778776654322111 0
Q ss_pred CCeeEEEeecCCeEEEEECCCceeccccceeeeeee-------------------CCCCC---------------CCceE
Q 021399 94 SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR-------------------DPADQ---------------GGESV 139 (313)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~---------------~~~~~ 139 (313)
.....+.|.++ .++...... ....++.+.. .+... ....+
T Consensus 204 ~~v~~~~~s~d-~l~~~~~~d-----g~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l 277 (1045)
T 1k32_A 204 THVSSPVIVGH-RIYFITDID-----GFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKI 277 (1045)
T ss_dssp SCCEEEEEETT-EEEEEECTT-----SSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCE
T ss_pred CcccceEEeCC-EEEEEEecc-----CceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEe
Confidence 11112222222 222221110 0001111000 00000 00111
Q ss_pred EEecC-----------CCCceEEEEEc-cCCCEEEEeeCCCeEEEEECCCCceeeecccccCcee-ceEEEEECCCCCEE
Q 021399 140 LILKG-----------PQGRINRAVWG-PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKK-TITSLAKAADGSHF 206 (313)
Q Consensus 140 ~~~~~-----------~~~~i~~~~~~-~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~l 206 (313)
..+.+ |...+..+.|+ |+++.+++++ ++.|.+|+...+.... + ..|.. .+..++|+ ||+.|
T Consensus 278 ~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~---~~~~~~~~~~~~~s-dg~~l 351 (1045)
T 1k32_A 278 EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-V---PEPLRIRYVRRGGD-TKVAF 351 (1045)
T ss_dssp EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-C---SCCSCEEEEEECSS-SEEEE
T ss_pred eeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-c---cCCCcceEEeeeEc-CCCeE
Confidence 11222 12357789999 9999888887 7889999988766433 2 23555 78999999 99999
Q ss_pred EEeeCCCcEE-EEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccc
Q 021399 207 LTGSLDKSAK-LWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK 285 (313)
Q Consensus 207 ~s~s~dg~i~-iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (313)
+.++.++.+. +||+++++......+...+..++|+|++..++++... . .+++||..+++....+.
T Consensus 352 ~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~--~------------~v~~~d~~tg~~~~~~~ 417 (1045)
T 1k32_A 352 IHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDR--F------------EIMTVDLETGKPTVIER 417 (1045)
T ss_dssp EEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEETT--S------------EEEEEETTTCCEEEEEE
T ss_pred EEEECCCceEEEEECCCCCceEecCCccceeeeEECCCCCEEEEECCC--C------------eEEEEECCCCceEEecc
Confidence 9999888888 9999887764433334568899999999988765432 2 34456655554444444
Q ss_pred ccccceeEEEECCCCCeeEEEEE
Q 021399 286 GHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 286 ~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
+|.+.|.+++|||||+++++...
T Consensus 418 ~~~~~v~~~~~SpDG~~la~~~~ 440 (1045)
T 1k32_A 418 SREAMITDFTISDNSRFIAYGFP 440 (1045)
T ss_dssp CSSSCCCCEEECTTSCEEEEEEE
T ss_pred CCCCCccceEECCCCCeEEEEec
Confidence 78899999999999999988754
No 144
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=3.5e-21 Score=180.87 Aligned_cols=281 Identities=11% Similarity=0.064 Sum_probs=176.3
Q ss_pred ccccccc---ceeEEEEccCCCEEEEeeCC---------CCeEEEeCCCCcE--EEEecCCCCceEEEEECCCCCeEEEe
Q 021399 5 LMKGHER---PLTYLKYNKDGDLLFSCAKD---------HTPTVWFADNGER--LGTYRGHNGAVWCCDVSRDSMTLITG 70 (313)
Q Consensus 5 ~l~~h~~---~v~~~~fs~~g~~l~s~s~d---------~~i~iw~~~~~~~--~~~~~~H~~~V~~~~~~~~~~~l~s~ 70 (313)
++.+|.. .|.+++|||||++|++++.+ +.+.+||+++++. +....+|...+..++|||||+.++.+
T Consensus 52 ~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~ 131 (723)
T 1xfd_A 52 LIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFI 131 (723)
T ss_dssp EECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEE
T ss_pred EeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEE
Confidence 4445554 48999999999999999875 6777999998875 22233555668899999999999988
Q ss_pred eCCCcEEEEECCCCeEEEEecC-CCC------------------eeEEEeecCCeEEEEEC-CC-c---eecc-------
Q 021399 71 SADQTAKLWNVETGAQLFTFNF-DSP------------------ARSVDFAVGDKLAVITT-DP-F---MELN------- 119 (313)
Q Consensus 71 s~D~~v~vWd~~~~~~~~~~~~-~~~------------------~~~~~~~~~~~~~~~~~-~~-~---~~~~------- 119 (313)
+. +.|++||+.+++....... ... ...+.|+|+++.++... +. . ..+.
T Consensus 132 ~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~ 210 (723)
T 1xfd_A 132 FE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIY 210 (723)
T ss_dssp ET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSS
T ss_pred EC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCC
Confidence 76 7999999998876554432 112 26788999876555432 21 0 0000
Q ss_pred -----------------ccceeeeeeeCCCCCCCceEEEecCC------CCceEEEEEccCCCEEEEeeC----CCeEEE
Q 021399 120 -----------------SAIHVKRIARDPADQGGESVLILKGP------QGRINRAVWGPLNRTIISAGE----DAIVRI 172 (313)
Q Consensus 120 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~i~t~~~----d~~i~l 172 (313)
..+.++++. ++.....+..+ ...+..+.|+|+++.+++... +..|++
T Consensus 211 ~~~~~~~~~~~G~~~~~~~l~~~d~~------~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~ 284 (723)
T 1xfd_A 211 PTVKPYHYPKAGSENPSISLHVIGLN------GPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL 284 (723)
T ss_dssp CCCEEEECCBTTSCCCEEEEEEEESS------SSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred CcceeccCCCCCCCCCeeEEEEEECC------CCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEE
Confidence 011111111 11111223332 456788999999998876643 468999
Q ss_pred EECCCCceeeecccccCceece----EEEEECCCCCEEEE--eeCCC------cEEEEE-CCCCc--EEEEEec-CCcee
Q 021399 173 WDTETGKLLKESDKETGHKKTI----TSLAKAADGSHFLT--GSLDK------SAKLWD-ARTLE--LIKTYVT-ERPVN 236 (313)
Q Consensus 173 wd~~~~~~~~~~~~~~~h~~~v----~~~~~s~~~~~l~s--~s~dg------~i~iwd-~~~~~--~~~~~~~-~~~~~ 236 (313)
||+.+++....... .+...+ ..++|+|||+.|+. +..|+ .|.+|| ..+++ +...+.. ...+.
T Consensus 285 ~d~~~g~~~~~~~~--~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 362 (723)
T 1xfd_A 285 CDATTGVCTKKHED--ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVT 362 (723)
T ss_dssp EETTTCCEEEEEEE--ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEE
T ss_pred EeCCCCcceEEEEe--ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEE
Confidence 99998876443221 122233 37899999997775 45677 577778 44444 1344432 33344
Q ss_pred -EEEeccCCCEEEEcccccC-ceeEeeccCCCceeeeeeehhh--hhhhccccc---cccceeEEEECCCCCeeEEE
Q 021399 237 -AVTMSPLLDHVVLGGGQDA-SAVTTTDHRAGKFEAKFFDKIL--QEEIGGVKG---HFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 237 -~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~---h~~~V~~~~fspdgk~~~~~ 306 (313)
.++|+|+++.+++++..+. . ..++|+... ......+.. |...+..++|||||+++++.
T Consensus 363 ~~~~~spdg~~l~~~~~~~~~~------------~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 363 KILAYDEKGNKIYFLSTEDLPR------------RRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp EEEEEETTTTEEEEEESSSCTT------------CCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred eeeEEcCCCCEEEEEEcCCCCc------------ceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEE
Confidence 3689999999876654321 1 122333221 111222322 67789999999999998874
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=3.6e-20 Score=157.90 Aligned_cols=262 Identities=14% Similarity=0.154 Sum_probs=163.4
Q ss_pred EEEEeeCCCCeEEEeCC-CCc--EEEEecCCCCceEEEEECCCCCeEEEeeCC-CcEEEEECC--CCeEE--EEecCCCC
Q 021399 24 LLFSCAKDHTPTVWFAD-NGE--RLGTYRGHNGAVWCCDVSRDSMTLITGSAD-QTAKLWNVE--TGAQL--FTFNFDSP 95 (313)
Q Consensus 24 ~l~s~s~d~~i~iw~~~-~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D-~~v~vWd~~--~~~~~--~~~~~~~~ 95 (313)
.+++++.|+.|++|+++ +++ .+.. ..|...+.+++|+|+++.+++++.+ +.|++|++. +++.. ..+.....
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 85 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGS 85 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSC
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCC
Confidence 44444789999999985 332 2333 3477789999999999988888876 999999997 55433 33333446
Q ss_pred eeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee-CCCeEEEEE
Q 021399 96 ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWD 174 (313)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~-~d~~i~lwd 174 (313)
+..+.|++++..+++.... ...+.++++. + ............ ...+..+.|+|+++++++++ .++.|++||
T Consensus 86 ~~~~~~s~dg~~l~~~~~~----~~~i~~~d~~-~--~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d 157 (343)
T 1ri6_A 86 LTHISTDHQGQFVFVGSYN----AGNVSVTRLE-D--GLPVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFT 157 (343)
T ss_dssp CSEEEECTTSSEEEEEETT----TTEEEEEEEE-T--TEEEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEE
T ss_pred CcEEEEcCCCCEEEEEecC----CCeEEEEECC-C--CccccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEE
Confidence 7788899877655443211 1223333331 0 001122223332 34578899999999888777 899999999
Q ss_pred CCC-Cceeeec--ccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCC--CcE--EEEEe---c----CCceeEEE
Q 021399 175 TET-GKLLKES--DKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDART--LEL--IKTYV---T----ERPVNAVT 239 (313)
Q Consensus 175 ~~~-~~~~~~~--~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~--~~~--~~~~~---~----~~~~~~~~ 239 (313)
+.+ ++..... .........+..++|+|++++++.++ .++.|++||++. ++. ...+. . ...+..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 237 (343)
T 1ri6_A 158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIH 237 (343)
T ss_dssp ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEE
T ss_pred ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceE
Confidence 987 5432111 11112335688899999999776554 789999999953 432 22222 1 12355799
Q ss_pred eccCCCEEEEcccccCceeEeeccC--CCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 240 MSPLLDHVVLGGGQDASAVTTTDHR--AGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
|+|++..++++...+ ..+.+|+.. .+.. +.+..+..+.. +.+++|+|||+.+...
T Consensus 238 ~s~dg~~l~v~~~~~-~~i~v~d~~~~~~~~----------~~~~~~~~~~~-~~~~~~s~dg~~l~~~ 294 (343)
T 1ri6_A 238 ITPDGRHLYACDRTA-SLITVFSVSEDGSVL----------SKEGFQPTETQ-PRGFNVDHSGKYLIAA 294 (343)
T ss_dssp ECTTSSEEEEEETTT-TEEEEEEECTTSCCE----------EEEEEEECSSS-CCCEEECTTSSEEEEE
T ss_pred ECCCCCEEEEEecCC-CEEEEEEEcCCCCce----------EEeeeecCCCc-cceEEECCCCCEEEEe
Confidence 999999888765433 344555543 1111 11122222333 8899999999976543
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=1e-20 Score=162.24 Aligned_cols=249 Identities=15% Similarity=0.118 Sum_probs=158.2
Q ss_pred ccccccceeEEEEccCCCEEEEeeC---CCCeEEEeCCCCc--EEEEecCCCCceEEEEECCCCCeEEEee-CCCcEEEE
Q 021399 6 MKGHERPLTYLKYNKDGDLLFSCAK---DHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLW 79 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s~s~---d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~v~vW 79 (313)
+..+...+..++|+|||+ |++++. ++.|++|++++++ .+..+..|...+..++|+|+++.+++++ .++++++|
T Consensus 35 ~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 35 LLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 344556778899999999 665554 6899999998776 4555566777888999999999888877 78999999
Q ss_pred ECCC-CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399 80 NVET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (313)
Q Consensus 80 d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (313)
++.. +........ ... . ..+. .......+..+.|+|++
T Consensus 114 ~~~~~g~~~~~~~~------------------~~~------~--------~~p~---------~~~~~~~~~~~~~spdg 152 (347)
T 3hfq_A 114 KIAADGALTLTDTV------------------QHS------G--------HGPR---------PEQDGSHIHYTDLTPDN 152 (347)
T ss_dssp EECTTSCEEEEEEE------------------ECC------C--------CCSS---------TTCSSCCEEEEEECTTS
T ss_pred EeCCCCCeeeccee------------------ecC------C--------CCCC---------ccccCCCceEEEECCCC
Confidence 9853 222111000 000 0 0000 00122357789999999
Q ss_pred CEEEEeeCCCeEEEEECC-CCceeeecccccCceeceEEEEECCCCCEEEE-eeCCCcEEEEECCC--CcE--EEEEec-
Q 021399 159 RTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDART--LEL--IKTYVT- 231 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~s~dg~i~iwd~~~--~~~--~~~~~~- 231 (313)
+.+++...++.|++||+. +++..............+..++|+|||++++. +..++.|++|+++. ++. +..+..
T Consensus 153 ~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~ 232 (347)
T 3hfq_A 153 RLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTI 232 (347)
T ss_dssp CEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESS
T ss_pred cEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeec
Confidence 966666778899999998 44432211111112235778999999996665 55688999999874 443 222221
Q ss_pred C------CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEE
Q 021399 232 E------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 232 ~------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~ 305 (313)
. ..+..++|+|++..++++...+ ..+.+|+..... ..+.+..+..|...+..++|+|||+.++.
T Consensus 233 ~~~~~~~~~~~~i~~spdG~~l~v~~~~~-~~v~v~~~~~~g---------~~~~~~~~~~~~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 233 PADYTAHNGAAAIRLSHDGHFLYVSNRGY-NTLAVFAVTADG---------HLTLIQQISTEGDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp CTTCCSCCEEEEEEECTTSCEEEEEEETT-TEEEEEEECGGG---------CEEEEEEEECSSSCCCEEEECTTSSEEEE
T ss_pred CCCCCCCCcceeEEECCCCCEEEEEeCCC-CEEEEEEECCCC---------cEEEeEEEecCCCCcCeEEECCCCCEEEE
Confidence 1 3477899999999887764332 233333321100 11222333445567899999999998755
Q ss_pred E
Q 021399 306 L 306 (313)
Q Consensus 306 ~ 306 (313)
.
T Consensus 303 ~ 303 (347)
T 3hfq_A 303 V 303 (347)
T ss_dssp E
T ss_pred E
Confidence 3
No 147
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=4.1e-21 Score=169.76 Aligned_cols=163 Identities=10% Similarity=0.006 Sum_probs=127.9
Q ss_pred ccccceeEEEEccCCCEEE----EeeCCCCeEEEeCCCC--------c---EEEEecCCCCceEEEEECCC-CCeEEEee
Q 021399 8 GHERPLTYLKYNKDGDLLF----SCAKDHTPTVWFADNG--------E---RLGTYRGHNGAVWCCDVSRD-SMTLITGS 71 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~----s~s~d~~i~iw~~~~~--------~---~~~~~~~H~~~V~~~~~~~~-~~~l~s~s 71 (313)
.|...|.+++|+|+|++|+ +|+.|+.|+|||+.++ + .+..+.+|...|.+++|+|+ +++|++++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 3556799999999999999 8999999999998654 1 24567789999999999998 78999999
Q ss_pred CCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEE
Q 021399 72 ADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (313)
Q Consensus 72 ~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (313)
.||+|++||++++.... ...+|...+.+
T Consensus 170 ~Dg~v~iwD~~~~~~~~----------------------------------------------------~~~~~~~~v~~ 197 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVC----------------------------------------------------ATLPSTVAVTS 197 (434)
T ss_dssp TTSCEEEEEESSSEEEE----------------------------------------------------EEECGGGCEEE
T ss_pred CCCeEEEEEcCCCccee----------------------------------------------------eccCCCCceeE
Confidence 99999999998763221 11235567899
Q ss_pred EEEccCCCEEEEeeCCCeEEEEECCCCceeeecccc----cCceeceEEEEECCCCCEEEEee-CCC------cEEEEEC
Q 021399 152 AVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKE----TGHKKTITSLAKAADGSHFLTGS-LDK------SAKLWDA 220 (313)
Q Consensus 152 ~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~----~~h~~~v~~~~~s~~~~~l~s~s-~dg------~i~iwd~ 220 (313)
++|+|++++|++|+.|+.|++||++ ++....+... ..|...+.+++|++++.++++.+ .|| .+++|++
T Consensus 198 v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l 276 (434)
T 2oit_A 198 VCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALL 276 (434)
T ss_dssp EEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred EEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEe
Confidence 9999999999999999999999998 4443333211 13456899999999988775543 343 3899999
Q ss_pred CCC
Q 021399 221 RTL 223 (313)
Q Consensus 221 ~~~ 223 (313)
+..
T Consensus 277 ~~~ 279 (434)
T 2oit_A 277 PKK 279 (434)
T ss_dssp CCT
T ss_pred ccC
Confidence 864
No 148
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.86 E-value=2.6e-20 Score=174.57 Aligned_cols=268 Identities=15% Similarity=0.159 Sum_probs=170.5
Q ss_pred eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEE-EEecCCC-----------------CceEEEEECCCCCeEEEeeCCC
Q 021399 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-GTYRGHN-----------------GAVWCCDVSRDSMTLITGSADQ 74 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~-~~~~~H~-----------------~~V~~~~~~~~~~~l~s~s~D~ 74 (313)
+..+.|. |+.+++++.|+ | +||.++++.+ ..+..|. ..|.+++|+|| +.++.+ .|+
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~ 101 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQG 101 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECC
Confidence 4557787 77888888888 8 9999999873 4444433 56999999999 544443 469
Q ss_pred cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC-------
Q 021399 75 TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG------- 147 (313)
Q Consensus 75 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 147 (313)
++++||+.+++..........+..+.|+|+++.++...+. .+.++++... ....+........+..
T Consensus 102 ~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~------~i~v~~~~~~-~~~~g~~~~~~~~~~~~~~~g~~ 174 (706)
T 2z3z_A 102 GLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNH------NLYIARGGKL-GEGMSRAIAVTIDGTETLVYGQA 174 (706)
T ss_dssp EEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETT------EEEEEECBCT-TSCCCCCEESCSCCBTTEEESSC
T ss_pred EEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECC------eEEEEecCcc-cccCCCcEEeccCCCCCeEcccc
Confidence 9999999998876665555566778899987665554332 2223332210 0000111111111212
Q ss_pred -------ceEEEEEccCCCEEEEee---------------------------------CCCeEEEEECCCCceeeecccc
Q 021399 148 -------RINRAVWGPLNRTIISAG---------------------------------EDAIVRIWDTETGKLLKESDKE 187 (313)
Q Consensus 148 -------~i~~~~~~~~~~~i~t~~---------------------------------~d~~i~lwd~~~~~~~~~~~~~ 187 (313)
.+..+.|+|++++|++++ .+..|++||+.+++..... ..
T Consensus 175 ~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~-~~ 253 (706)
T 2z3z_A 175 VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ-TG 253 (706)
T ss_dssp CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC-CC
T ss_pred hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec-cC
Confidence 247899999999999987 4578999999887654322 22
Q ss_pred cCceeceEEEEECCCCCEEEEeeCCC-----cEEEEECCCCcEEEEEe-c--CC---ceeEEEecc--CCCEEEEccccc
Q 021399 188 TGHKKTITSLAKAADGSHFLTGSLDK-----SAKLWDARTLELIKTYV-T--ER---PVNAVTMSP--LLDHVVLGGGQD 254 (313)
Q Consensus 188 ~~h~~~v~~~~~s~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~-~--~~---~~~~~~~~p--~~~~~~~~~~~~ 254 (313)
..|...+.+++|+|||+.|++++.|+ .|++||+++++....+. . .. .+..++|+| ++..++++..+.
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 24667899999999999999988776 89999999984444432 1 11 246789999 887555443222
Q ss_pred CceeEeeccCCCceeeeeeehhhhhhhccccccccceeE-EEECCCCCeeEEEE
Q 021399 255 ASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA-LAFNPDGKRYGFLL 307 (313)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~fspdgk~~~~~~ 307 (313)
...++.. +. .+..+..+..|...|.. ++|+|||+.++|..
T Consensus 334 ~~~l~~~------------~~-~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~ 374 (706)
T 2z3z_A 334 WNHLYLY------------DT-TGRLIRQVTKGEWEVTNFAGFDPKGTRLYFES 374 (706)
T ss_dssp SCEEEEE------------ET-TSCEEEECCCSSSCEEEEEEECTTSSEEEEEE
T ss_pred ccEEEEE------------EC-CCCEEEecCCCCeEEEeeeEEcCCCCEEEEEe
Confidence 2222222 21 22333445567777876 89999999988764
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=9.8e-20 Score=151.61 Aligned_cols=211 Identities=9% Similarity=-0.020 Sum_probs=148.3
Q ss_pred EeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC-CeEEEEecCCCCeeEEEeecCC
Q 021399 27 SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET-GAQLFTFNFDSPARSVDFAVGD 105 (313)
Q Consensus 27 s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~ 105 (313)
+++.|+.|++||..+++.. .+..|...|.+++|+|+++++++++ ++.|++||+.+ ++.....
T Consensus 17 ~~~~~~~i~~~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~--------------- 79 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVD--------------- 79 (297)
T ss_dssp -CCCCEEEEEEETTTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECC---------------
T ss_pred CCCcceeEEEEeCCCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEec---------------
Confidence 3567899999999988765 5666899999999999999998876 88999999987 5432110
Q ss_pred eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCC-CCceEEEEEccCCCEEEEee--CCC--eEEEEECCCCce
Q 021399 106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRTIISAG--EDA--IVRIWDTETGKL 180 (313)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~i~t~~--~d~--~i~lwd~~~~~~ 180 (313)
..+ ...+..+.|+|+++++++++ .++ .|.+|+...+..
T Consensus 80 -------------------------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~ 122 (297)
T 2ojh_A 80 -------------------------------------TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP 122 (297)
T ss_dssp -------------------------------------CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC
T ss_pred -------------------------------------cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce
Confidence 011 23566788999999999988 333 455555555442
Q ss_pred eeecccccCceeceEEEEECCCCCEEE-EeeCCCcEEEEEC--CCCcEEEEEecCCceeEEEeccCCCEEEEcccccCce
Q 021399 181 LKESDKETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDA--RTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASA 257 (313)
Q Consensus 181 ~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~dg~i~iwd~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 257 (313)
..+. +...+..++|+|+++.|+ +++.|+.+++|++ .+++..........+..++|+|++..+++++..+..
T Consensus 123 -~~~~----~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~- 196 (297)
T 2ojh_A 123 -RLMT----KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQ- 196 (297)
T ss_dssp -EECC----SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSS-
T ss_pred -EEee----cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCC-
Confidence 2222 223488899999999887 7888999999985 445543333345678999999999988776543321
Q ss_pred eEeeccCCCceeeeeeehh-hhhhhccccccccceeEEEECCCCCeeEEEEEE
Q 021399 258 VTTTDHRAGKFEAKFFDKI-LQEEIGGVKGHFGPINALAFNPDGKRYGFLLLQ 309 (313)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~~ 309 (313)
.++|+.. ....+..+..|...+..++|+|||+++++....
T Consensus 197 ------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 237 (297)
T 2ojh_A 197 ------------MQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYD 237 (297)
T ss_dssp ------------CEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEE
T ss_pred ------------ccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcC
Confidence 1223221 222334556678899999999999999987653
No 150
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.85 E-value=3.6e-18 Score=146.27 Aligned_cols=227 Identities=11% Similarity=0.023 Sum_probs=165.7
Q ss_pred cceeEEEEccCCCEEEE-eeCCCCeEEEeCCCCcEEEEecCCCCc---------eEEEEECCCCCeEEEee--CCCcEEE
Q 021399 11 RPLTYLKYNKDGDLLFS-CAKDHTPTVWFADNGERLGTYRGHNGA---------VWCCDVSRDSMTLITGS--ADQTAKL 78 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s-~s~d~~i~iw~~~~~~~~~~~~~H~~~---------V~~~~~~~~~~~l~s~s--~D~~v~v 78 (313)
..+..++|+|+|++++. ...++.|.+||.++++.+..+..+... +.+++|+|+++.++.++ .++.|.+
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence 34678999999995554 455799999999999998888765432 78899999998776665 5889999
Q ss_pred EECCCCeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec----CCCCceEEEE
Q 021399 79 WNVETGAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK----GPQGRINRAV 153 (313)
Q Consensus 79 Wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~ 153 (313)
||+.+++.+..+. .......+.+++++..+++.... ..+..++. ..+.....+. ++...+..+.
T Consensus 169 ~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~-----~~i~~~d~------~~~~~~~~~~~~~~~~~~~~~~~~ 237 (353)
T 3vgz_A 169 VDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD-----GELITIDT------ADNKILSRKKLLDDGKEHFFINIS 237 (353)
T ss_dssp EETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTT-----SEEEEEET------TTTEEEEEEECCCSSSCCCEEEEE
T ss_pred EcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCC-----CeEEEEEC------CCCeEEEEEEcCCCCCCcccceEE
Confidence 9999998887776 44446677888876655444321 11111111 1122232222 2444577899
Q ss_pred EccCCCEEEEee-CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCcEEEEEec
Q 021399 154 WGPLNRTIISAG-EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVT 231 (313)
Q Consensus 154 ~~~~~~~i~t~~-~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~ 231 (313)
|+|++++++.++ .++.|.+||..+++.+..+.. +. ...++|+|+|++++.++ .++.|.+||+++++.+..+..
T Consensus 238 ~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~ 312 (353)
T 3vgz_A 238 LDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA--PE---SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDT 312 (353)
T ss_dssp EETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC--SS---CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc--CC---CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEec
Confidence 999999776665 459999999998887766542 11 25689999999665555 689999999999999888877
Q ss_pred CCceeEEEeccCCCEEEEcccc
Q 021399 232 ERPVNAVTMSPLLDHVVLGGGQ 253 (313)
Q Consensus 232 ~~~~~~~~~~p~~~~~~~~~~~ 253 (313)
......++|+|+++.++++...
T Consensus 313 ~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 313 PTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp CSEEEEEEECTTSCEEEEEEEC
T ss_pred CCCCCeEEEcCCCCEEEEEEcc
Confidence 7788999999999988887543
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=3e-20 Score=174.55 Aligned_cols=270 Identities=11% Similarity=0.022 Sum_probs=174.6
Q ss_pred eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCC---ceEEEEECCCCCeEEEeeC---------CCcEEEEEC
Q 021399 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNG---AVWCCDVSRDSMTLITGSA---------DQTAKLWNV 81 (313)
Q Consensus 14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~---~V~~~~~~~~~~~l~s~s~---------D~~v~vWd~ 81 (313)
..++|+|||+++++ +.|+.|++||.++++....+.+|.. .|.+++|||||+.++.++. |++|++||+
T Consensus 19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 19 FFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred CccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 47899999966554 4699999999999998777766644 4899999999999988876 799999999
Q ss_pred CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEE---------EecCCCC-----
Q 021399 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL---------ILKGPQG----- 147 (313)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~----- 147 (313)
.+++.+........+..+.|+|+++.++...+. .+.++++.. +.... .+.++..
T Consensus 98 ~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~------~i~~~~~~~------g~~~~l~~~~~~~~v~~g~~~~v~~e 165 (719)
T 1z68_A 98 SNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQN------NIYLKQRPG------DPPFQITFNGRENKIFNGIPDWVYEE 165 (719)
T ss_dssp TTTEECCSSCCCSSBCCEEECSSTTCEEEEETT------EEEEESSTT------SCCEECCCCCBTTTEEESSCCHHHHH
T ss_pred CCCccccceecCcccccceECCCCCEEEEEECC------eEEEEeCCC------CCcEEEecCCCcCCeEcccccceeee
Confidence 998762111223456778899987665554332 122222110 11111 1112211
Q ss_pred ----ceEEEEEccCCCEEEEeeCCC----------------------------------eEEEEECCCCcee--eecc--
Q 021399 148 ----RINRAVWGPLNRTIISAGEDA----------------------------------IVRIWDTETGKLL--KESD-- 185 (313)
Q Consensus 148 ----~i~~~~~~~~~~~i~t~~~d~----------------------------------~i~lwd~~~~~~~--~~~~-- 185 (313)
....+.|+|+|++|++++.|. .|++||+.+++.. ..+.
T Consensus 166 e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~ 245 (719)
T 1z68_A 166 EMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP 245 (719)
T ss_dssp HTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC
T ss_pred ecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC
Confidence 124799999999999987652 7899999887642 1111
Q ss_pred -cccCceeceEEEEECCCCCEEEEeeCC----CcEEEEE----CCCCcEEEEEe-----cCCcee-----EEEeccCCCE
Q 021399 186 -KETGHKKTITSLAKAADGSHFLTGSLD----KSAKLWD----ARTLELIKTYV-----TERPVN-----AVTMSPLLDH 246 (313)
Q Consensus 186 -~~~~h~~~v~~~~~s~~~~~l~s~s~d----g~i~iwd----~~~~~~~~~~~-----~~~~~~-----~~~~~p~~~~ 246 (313)
...+|...+..++|+||+..+++.... ..|.+|| ++++++...+. +...+. .++|+|++..
T Consensus 246 ~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~ 325 (719)
T 1z68_A 246 AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS 325 (719)
T ss_dssp HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSC
T ss_pred ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCe
Confidence 113577889999999998877774432 2488899 88776544331 223344 7899999987
Q ss_pred EEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 247 VVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
+++..+... +...+..||...++ ...+..+...|..+.++ ||+.+.|...
T Consensus 326 l~~~~~~~~----------g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~ 375 (719)
T 1z68_A 326 YYKIFSDKD----------GYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSN 375 (719)
T ss_dssp EEEEEECTT----------SCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEES
T ss_pred EEEEEEccC----------CceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEe
Confidence 665322111 11233444443322 22344455667888888 9998888763
No 152
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.84 E-value=4.5e-19 Score=154.10 Aligned_cols=291 Identities=13% Similarity=0.028 Sum_probs=171.9
Q ss_pred ccccccccceeE-----EEEccCCCEEEEeeC-CCC--eEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCc
Q 021399 4 ILMKGHERPLTY-----LKYNKDGDLLFSCAK-DHT--PTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT 75 (313)
Q Consensus 4 ~~l~~h~~~v~~-----~~fs~~g~~l~s~s~-d~~--i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~ 75 (313)
+.|..|...... .+|||||++|+.++. ++. |.+||.++++......+|...+..+.|+||++.|+.++.++.
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~ 103 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRN 103 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTE
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCe
Confidence 345566655555 889999999999987 674 777899888887777777777667889999999999999999
Q ss_pred EEEEECCCCeEEEEecCCCC-eeEE--EeecCCeEEEEECC-Cc-e-------------eccccceeeeeeeCCCCCCCc
Q 021399 76 AKLWNVETGAQLFTFNFDSP-ARSV--DFAVGDKLAVITTD-PF-M-------------ELNSAIHVKRIARDPADQGGE 137 (313)
Q Consensus 76 v~vWd~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~-~~-~-------------~~~~~~~~~~~~~~~~~~~~~ 137 (313)
+++||+.+++.......... .... .+.+++..++.... .. . .......++.+ +. ..++
T Consensus 104 l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--d~--~~g~ 179 (388)
T 3pe7_A 104 LMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV--DL--KTGE 179 (388)
T ss_dssp EEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE--ET--TTCC
T ss_pred EEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE--EC--CCCc
Confidence 99999999887655544332 2122 23555554443210 00 0 00000111111 11 1122
Q ss_pred eEEEecCCCCceEEEEEcc-CCCEEEEeeCC------CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee
Q 021399 138 SVLILKGPQGRINRAVWGP-LNRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS 210 (313)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~-~~~~i~t~~~d------~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 210 (313)
...+..+...+..+.|+| +++.|+.+..+ ..|.++|...+.. ..+... .....+...+|+|||+.|+..+
T Consensus 180 -~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~-~~~~~~~~~~~spdg~~l~~~~ 256 (388)
T 3pe7_A 180 -STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTH-AEGESCTHEFWVPDGSALVYVS 256 (388)
T ss_dssp -EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCC-CTTEEEEEEEECTTSSCEEEEE
T ss_pred -eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeC-CCCcccccceECCCCCEEEEEe
Confidence 222333455678899999 99988877653 3788888765543 222211 1113577889999999876654
Q ss_pred CC-C----cEEEEECCCCcEEEEEecCCc------eeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhh
Q 021399 211 LD-K----SAKLWDARTLELIKTYVTERP------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQE 279 (313)
Q Consensus 211 ~d-g----~i~iwd~~~~~~~~~~~~~~~------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (313)
.+ + .|.+||+++++.......... ....+|+|++..++++....... ...+...+.+||..+++
T Consensus 257 ~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~-----~~~~~~~i~~~d~~~~~ 331 (388)
T 3pe7_A 257 YLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGY-----KIENDPFLYVFNMKNGT 331 (388)
T ss_dssp EETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-----------------CCCCEEEEEETTTTE
T ss_pred cCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccc-----ccCCCCEEEEEeccCCc
Confidence 32 2 399999999875332222211 12236889888776543210000 00011233444443322
Q ss_pred hhcccccccc-----------ceeEEEECCCCCeeEEEE
Q 021399 280 EIGGVKGHFG-----------PINALAFNPDGKRYGFLL 307 (313)
Q Consensus 280 ~~~~~~~h~~-----------~V~~~~fspdgk~~~~~~ 307 (313)
. ..+..|.. .+.+++|+|||+.++|..
T Consensus 332 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s 369 (388)
T 3pe7_A 332 Q-HRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS 369 (388)
T ss_dssp E-EEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred e-EEeccccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence 1 22333444 578899999999998865
No 153
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.84 E-value=1.5e-18 Score=147.55 Aligned_cols=230 Identities=13% Similarity=0.100 Sum_probs=157.6
Q ss_pred CEEEEeeCCCCeEEEeCCCCcEEEEecCCC-C-ceEEEEECCCCCeE-EEeeCCCcEEEEECCCCeEEEEecCCC-----
Q 021399 23 DLLFSCAKDHTPTVWFADNGERLGTYRGHN-G-AVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNFDS----- 94 (313)
Q Consensus 23 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~-~-~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~~~----- 94 (313)
++|++++.++.|++||..+++.+..+.... . .+..++|+|+++.+ ++++.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~ 81 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV 81 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence 478999999999999999999888876432 2 47889999999754 666678999999999988776665433
Q ss_pred -CeeEEEeecCCeEEEEECCCc------ee-ccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC
Q 021399 95 -PARSVDFAVGDKLAVITTDPF------ME-LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE 166 (313)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~ 166 (313)
.+..+.++++++.+++..... .. ....+.++++ ..+..+..+.. ...+..+.|+|++++++++
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~------~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~-- 152 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA------ETLSRRKAFEA-PRQITMLAWARDGSKLYGL-- 152 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEET------TTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEEC------CCCcEEEEEeC-CCCcceeEECCCCCEEEEe--
Confidence 456778888775544432100 00 0111222221 12233333332 3346678899999988877
Q ss_pred CCeEEEEECCCCceeeeccccc----------------------------------------------------------
Q 021399 167 DAIVRIWDTETGKLLKESDKET---------------------------------------------------------- 188 (313)
Q Consensus 167 d~~i~lwd~~~~~~~~~~~~~~---------------------------------------------------------- 188 (313)
++.|++||+.+++....+....
T Consensus 153 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 232 (337)
T 1pby_B 153 GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232 (337)
T ss_dssp SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence 5789999998876654322110
Q ss_pred -----CceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399 189 -----GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH 263 (313)
Q Consensus 189 -----~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (313)
.+...+.+++|+|+|++++++ ++.|++||+++++.+..+.....+..++|+|+++.+++++. ...+.++|.
T Consensus 233 ~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~i~v~d~ 308 (337)
T 1pby_B 233 MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGA--LGDLAAYDA 308 (337)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESB--SSEEEEEET
T ss_pred EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcC--CCcEEEEEC
Confidence 011234568999999999888 79999999999998888776677889999999998887643 334545554
Q ss_pred CC
Q 021399 264 RA 265 (313)
Q Consensus 264 ~~ 265 (313)
..
T Consensus 309 ~~ 310 (337)
T 1pby_B 309 ET 310 (337)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=3.9e-18 Score=146.96 Aligned_cols=239 Identities=11% Similarity=0.117 Sum_probs=152.6
Q ss_pred cccceeEEEEccCCCEEEEeeCC----CCeEEEeCCC--Cc--EEEEecCCCCceEEEEECCCCCeEEEee-CCCcEEEE
Q 021399 9 HERPLTYLKYNKDGDLLFSCAKD----HTPTVWFADN--GE--RLGTYRGHNGAVWCCDVSRDSMTLITGS-ADQTAKLW 79 (313)
Q Consensus 9 h~~~v~~~~fs~~g~~l~s~s~d----~~i~iw~~~~--~~--~~~~~~~H~~~V~~~~~~~~~~~l~s~s-~D~~v~vW 79 (313)
|...+..++|+|||++|++++.+ +.|.+|+++. ++ .+.....+......+++ +++.+++++ .++.+.+|
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF 125 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence 56677889999999999999986 7999998765 43 34445555666777777 777666665 68999999
Q ss_pred ECCCCeEE----EEecC-----------CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCC--C-Cce---
Q 021399 80 NVETGAQL----FTFNF-----------DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQ--G-GES--- 138 (313)
Q Consensus 80 d~~~~~~~----~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~--- 138 (313)
++.....+ ..... ......+.|+|+++.+++.... ...+.++++....... . ...
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~----~~~v~v~~~~~~~~~~~~~~l~~~~~ 201 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG----TDQIHKFNINPNANADNKEKFLTKGT 201 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT----TTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC----CCEEEEEEEcCCCCcccccceeeccc
Confidence 99753321 11111 1123668899987754443211 1112222222110000 0 000
Q ss_pred -EEEecCCCCceEEEEEccCCCEEEEee-CCCeEEEEECCCCce--eeecccccCceeceEEEEECCCCCEEEEeeCC--
Q 021399 139 -VLILKGPQGRINRAVWGPLNRTIISAG-EDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAADGSHFLTGSLD-- 212 (313)
Q Consensus 139 -~~~~~~~~~~i~~~~~~~~~~~i~t~~-~d~~i~lwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-- 212 (313)
......+......++|+|+++++++++ .++.|.+||+.+++. +..+.....+......++|+|||++|+++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~ 281 (361)
T 3scy_A 202 PEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKA 281 (361)
T ss_dssp EEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSS
T ss_pred ccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCC
Confidence 111222344567899999999877766 689999999886643 22222223344557899999999998776654
Q ss_pred CcEEEEECC--CCc--EEEEEecCCceeEEEeccCCCEEEEcccc
Q 021399 213 KSAKLWDAR--TLE--LIKTYVTERPVNAVTMSPLLDHVVLGGGQ 253 (313)
Q Consensus 213 g~i~iwd~~--~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 253 (313)
+.|.+|+++ +++ .+..+.....+..++|+|+++.++++...
T Consensus 282 ~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~ 326 (361)
T 3scy_A 282 DGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRD 326 (361)
T ss_dssp CEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETT
T ss_pred CEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECC
Confidence 899999985 444 44444444467899999999988887543
No 155
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.84 E-value=2.3e-19 Score=169.06 Aligned_cols=229 Identities=10% Similarity=0.058 Sum_probs=157.4
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCce-----EEEEECCCCCeEEEeeCC---------CcE
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAV-----WCCDVSRDSMTLITGSAD---------QTA 76 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V-----~~~~~~~~~~~l~s~s~D---------~~v 76 (313)
.....++|+|||++|+++ |+.|++||..+++....+.+|.... ..++|||||+.++.++.+ +.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~ 94 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY 94 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence 346689999999999986 9999999999999888888886532 347889999999988876 455
Q ss_pred EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
.+||+.+++... +..+.+.+..+.|+|
T Consensus 95 ~~~d~~~~~~~~-----------------------------------------------------l~~~~~~~~~~~~SP 121 (740)
T 4a5s_A 95 DIYDLNKRQLIT-----------------------------------------------------EERIPNNTQWVTWSP 121 (740)
T ss_dssp EEEETTTTEECC-----------------------------------------------------SSCCCTTEEEEEECS
T ss_pred EEEECCCCcEEE-----------------------------------------------------cccCCCcceeeEECC
Confidence 689988765321 112334677889999
Q ss_pred CCCEEEEeeCCCeEEEEECCCCceeeecccccCceece-----------------EEEEECCCCCEEEEeeCCC------
Q 021399 157 LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTI-----------------TSLAKAADGSHFLTGSLDK------ 213 (313)
Q Consensus 157 ~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v-----------------~~~~~s~~~~~l~s~s~dg------ 213 (313)
+|+.|+.+. ++.|++||..++...+ +.. .++...+ .+++|||||+.||.++.|.
T Consensus 122 dG~~la~~~-~~~i~~~~~~~~~~~~-lt~-~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~ 198 (740)
T 4a5s_A 122 VGHKLAYVW-NNDIYVKIEPNLPSYR-ITW-TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI 198 (740)
T ss_dssp STTCEEEEE-TTEEEEESSTTSCCEE-CCS-CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred CCCEEEEEE-CCeEEEEECCCCceEE-EcC-CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceE
Confidence 999999885 6899999998876543 211 1222222 3589999999999886432
Q ss_pred ------------------------------cEEEEECCC---Cc--EEEEEe-------cCCceeEEEeccCCCEEEEcc
Q 021399 214 ------------------------------SAKLWDART---LE--LIKTYV-------TERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 214 ------------------------------~i~iwd~~~---~~--~~~~~~-------~~~~~~~~~~~p~~~~~~~~~ 251 (313)
+|++||+++ ++ ....+. +...+..++|+|++..++...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~ 278 (740)
T 4a5s_A 199 EYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWL 278 (740)
T ss_dssp EEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEE
T ss_pred EEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEe
Confidence 478899988 73 222332 233477899999987444321
Q ss_pred cccCceeEeeccCCCceeeeeeehhhhh----h--hccc--ccccccee-----EEEECCCCCeeEEEE
Q 021399 252 GQDASAVTTTDHRAGKFEAKFFDKILQE----E--IGGV--KGHFGPIN-----ALAFNPDGKRYGFLL 307 (313)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~--~~h~~~V~-----~~~fspdgk~~~~~~ 307 (313)
. .......+.+||..+++ + +..+ .+|.+.|. ..+|||||+.++|..
T Consensus 279 ~----------r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~ 337 (740)
T 4a5s_A 279 R----------RIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKII 337 (740)
T ss_dssp E----------SSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEE
T ss_pred C----------CCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEE
Confidence 1 11122345666665554 1 2222 35666665 789999999998443
No 156
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.83 E-value=2.4e-18 Score=146.97 Aligned_cols=238 Identities=13% Similarity=0.047 Sum_probs=160.9
Q ss_pred EEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCC-CceEEEEECCCCCeE-EEeeCCCcEEEEECCCCeEEEEecC
Q 021399 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTL-ITGSADQTAKLWNVETGAQLFTFNF 92 (313)
Q Consensus 15 ~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l-~s~s~D~~v~vWd~~~~~~~~~~~~ 92 (313)
.+++++++.++++++.++.|++||.++++.+.++..+. ..+..++|+|+++.+ +++..++.|.+||+.+++.+.....
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~ 83 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL 83 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence 45678899999999999999999999999888887554 257789999999854 5666789999999999887766654
Q ss_pred CC-------CeeEEEeecCCeEEEEECCC-------ceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399 93 DS-------PARSVDFAVGDKLAVITTDP-------FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (313)
Q Consensus 93 ~~-------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (313)
.. .+..+.++++++.+++.... .......+..+++..... ...+..... ...+..+.|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~---~~~~~~~~~-~~~~~~~~~s~dg 159 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE---AKPVRTFPM-PRQVYLMRAADDG 159 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG---BCCSEEEEC-CSSCCCEEECTTS
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccc---cceeeeccC-CCcccceeECCCC
Confidence 32 25677888877655544311 000011222222221100 011112222 2357788899999
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeeccccc-C------------------------------------------------
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKET-G------------------------------------------------ 189 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~-~------------------------------------------------ 189 (313)
+ ++.++. .|++||+.+++....+.... +
T Consensus 160 ~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 160 S-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp C-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred c-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 9 555544 39999998887655432110 0
Q ss_pred ----------------ceeceEEEEECC-CCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEccc
Q 021399 190 ----------------HKKTITSLAKAA-DGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 190 ----------------h~~~v~~~~~s~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 252 (313)
+...+..++++| ++++++++ ++.|.+||+++++.+..+.....+..++|+|+++.+++++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~ 314 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGT 314 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESB
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecC
Confidence 001345677889 99998888 88999999999998888776667889999999998887532
Q ss_pred ccCceeEeecc
Q 021399 253 QDASAVTTTDH 263 (313)
Q Consensus 253 ~~~~~~~~~~~ 263 (313)
+ ..+.++|.
T Consensus 315 -~-~~v~v~d~ 323 (349)
T 1jmx_B 315 -F-NDLAVFNP 323 (349)
T ss_dssp -S-SEEEEEET
T ss_pred -C-CeEEEEec
Confidence 2 33444443
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.80 E-value=7e-17 Score=138.27 Aligned_cols=211 Identities=15% Similarity=0.170 Sum_probs=138.7
Q ss_pred cccccceeEEEEccCCCEEEEee-CCCCeEEEeCC-CCc--EEEEecC---------CCCceEEEEECCCCCeEEEeeCC
Q 021399 7 KGHERPLTYLKYNKDGDLLFSCA-KDHTPTVWFAD-NGE--RLGTYRG---------HNGAVWCCDVSRDSMTLITGSAD 73 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s~s-~d~~i~iw~~~-~~~--~~~~~~~---------H~~~V~~~~~~~~~~~l~s~s~D 73 (313)
..|...+..++|+|||++|++++ .++.|++|++. +++ .+..+.. +...+.+++|+|+|+++++...+
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~ 161 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGS 161 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTT
T ss_pred ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCC
Confidence 34667788999999999999888 68999999986 332 3333322 12348899999999977777778
Q ss_pred CcEEEEECC-CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEE
Q 021399 74 QTAKLWNVE-TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152 (313)
Q Consensus 74 ~~v~vWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (313)
+.|++|++. +++...... + . .........+
T Consensus 162 ~~v~~~~~~~~g~~~~~~~-------~-----------------------------------------~-~~~g~~p~~~ 192 (347)
T 3hfq_A 162 DKVYVYNVSDAGQLSEQSV-------L-----------------------------------------T-MEAGFGPRHL 192 (347)
T ss_dssp TEEEEEEECTTSCEEEEEE-------E-----------------------------------------E-CCTTCCEEEE
T ss_pred CEEEEEEECCCCcEEEeee-------E-----------------------------------------E-cCCCCCCceE
Confidence 999999987 443221100 0 0 0001234568
Q ss_pred EEccCCCEEEE-eeCCCeEEEEECCC--Cce--eeecccccC---ceeceEEEEECCCCCEE-EEeeCCCcEEEEECCC-
Q 021399 153 VWGPLNRTIIS-AGEDAIVRIWDTET--GKL--LKESDKETG---HKKTITSLAKAADGSHF-LTGSLDKSAKLWDART- 222 (313)
Q Consensus 153 ~~~~~~~~i~t-~~~d~~i~lwd~~~--~~~--~~~~~~~~~---h~~~v~~~~~s~~~~~l-~s~s~dg~i~iwd~~~- 222 (313)
+|+|+++++++ ...++.|++|++.. ++. +........ ....+..++|+|||++| ++...++.|.+||++.
T Consensus 193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~ 272 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD 272 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGG
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCC
Confidence 89999996555 56788999999763 432 111111110 11458899999999987 5566689999999873
Q ss_pred --CcEEEEEec-CCceeEEEeccCCCEEEEcccccCceeEee--ccCCCc
Q 021399 223 --LELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDASAVTTT--DHRAGK 267 (313)
Q Consensus 223 --~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~~~~ 267 (313)
.+.+..+.. ...+..++|+|++..++++...+ ..+.+| |...++
T Consensus 273 g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~-~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 273 GHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNT-DNATLYARDLTSGK 321 (347)
T ss_dssp GCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTT-TEEEEEEECTTTCC
T ss_pred CcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCC-CcEEEEEEeCCCCe
Confidence 344444443 34578999999999888775432 334444 444443
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.79 E-value=1.1e-17 Score=142.13 Aligned_cols=206 Identities=14% Similarity=0.052 Sum_probs=143.3
Q ss_pred cceeEEEEccCCCEEEEee------------CCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399 11 RPLTYLKYNKDGDLLFSCA------------KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s------------~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~v 78 (313)
..+.+++|+|+|++|++++ .++.|.+||.++++.+..+.. ...+.+++|+|+++.++++ ++.|.+
T Consensus 82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~ 158 (337)
T 1pby_B 82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHV 158 (337)
T ss_dssp ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEE
Confidence 3678899999999999886 679999999999988877765 4457788999999988777 689999
Q ss_pred EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceec---c------c----------cceeeeeeeCCCCCCCce-
Q 021399 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL---N------S----------AIHVKRIARDPADQGGES- 138 (313)
Q Consensus 79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------~----------~~~~~~~~~~~~~~~~~~- 138 (313)
||+.+++.+..+..........+.+++..+++........ . . .+..++ .. .++.
T Consensus 159 ~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d----~~--~~~~~ 232 (337)
T 1pby_B 159 MDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD----LE--TGEMA 232 (337)
T ss_dssp EETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE----TT--TCCEE
T ss_pred EECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEe----CC--CCCce
Confidence 9999998776654332111123444433222211100000 0 0 001111 11 1111
Q ss_pred EEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEE
Q 021399 139 VLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLW 218 (313)
Q Consensus 139 ~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iw 218 (313)
...+..+...+..+.|+|++++++++ ++.|++||+.+++.+..+. ....+.+++|+|+|++|++++.++.|++|
T Consensus 233 ~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~i~v~ 306 (337)
T 1pby_B 233 MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP----LPHSYYSVNVSTDGSTVWLGGALGDLAAY 306 (337)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE----CSSCCCEEEECTTSCEEEEESBSSEEEEE
T ss_pred EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec----CCCceeeEEECCCCCEEEEEcCCCcEEEE
Confidence 22233445567789999999998887 6899999999887766543 22457889999999999999999999999
Q ss_pred ECCCCcEEEEEec
Q 021399 219 DARTLELIKTYVT 231 (313)
Q Consensus 219 d~~~~~~~~~~~~ 231 (313)
|+++++.+..+..
T Consensus 307 d~~~~~~~~~~~~ 319 (337)
T 1pby_B 307 DAETLEKKGQVDL 319 (337)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECcCCcEEEEEEc
Confidence 9999998877653
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.79 E-value=2.6e-16 Score=135.49 Aligned_cols=270 Identities=11% Similarity=0.070 Sum_probs=154.8
Q ss_pred cCCCEEEEee----CCCCeEEEeC--CCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC----CcEEEEECCC--CeEE
Q 021399 20 KDGDLLFSCA----KDHTPTVWFA--DNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNVET--GAQL 87 (313)
Q Consensus 20 ~~g~~l~s~s----~d~~i~iw~~--~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D----~~v~vWd~~~--~~~~ 87 (313)
++..+++.|+ .++.|.+|.+ ++++.......|......++|+|+++++++++.+ +.|.+|++.. ++..
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~ 90 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLH 90 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEE
Confidence 3344555553 4678999965 4555432222266777889999999999988876 8999998865 4433
Q ss_pred EE--ec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC--------CCCceEEEEEcc
Q 021399 88 FT--FN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG--------PQGRINRAVWGP 156 (313)
Q Consensus 88 ~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~~~~~~ 156 (313)
.. .. .......+.+ .+..+.+..... ..+.++++................+ +...+..+.|+|
T Consensus 91 ~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp 164 (361)
T 3scy_A 91 LLNTQKTMGADPCYLTT-NGKNIVTANYSG-----GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITP 164 (361)
T ss_dssp EEEEEECSSSCEEEEEE-CSSEEEEEETTT-----TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT
T ss_pred EeeEeccCCCCcEEEEE-CCCEEEEEECCC-----CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECC
Confidence 22 22 2334555555 444444433211 1122222211100000011111111 123457899999
Q ss_pred CCCEEEEee-CCCeEEEEECCCCce------ee-e---cccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCc
Q 021399 157 LNRTIISAG-EDAIVRIWDTETGKL------LK-E---SDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE 224 (313)
Q Consensus 157 ~~~~i~t~~-~d~~i~lwd~~~~~~------~~-~---~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~ 224 (313)
+++++++++ .++.|++|++..... +. . ......+......++|+|||+++++++ .++.|.+||+++++
T Consensus 165 dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~ 244 (361)
T 3scy_A 165 DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM 244 (361)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence 999665554 588999998764331 11 0 011112345678999999999887777 68999999998765
Q ss_pred E--EEEEec----CCceeEEEeccCCCEEEEcccccCceeEeeccC--CCceeeeeeehhhhhhhccccccccceeEEEE
Q 021399 225 L--IKTYVT----ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR--AGKFEAKFFDKILQEEIGGVKGHFGPINALAF 296 (313)
Q Consensus 225 ~--~~~~~~----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~f 296 (313)
. +..+.. ......++|+|++..++++...+...+.+|+.. .+.+. .+..+.. ...+.+++|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~----------~~~~~~~-g~~~~~~~~ 313 (361)
T 3scy_A 245 LDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLT----------KVGYQLT-GIHPRNFII 313 (361)
T ss_dssp EEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEE----------EEEEEEC-SSCCCEEEE
T ss_pred eEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE----------EeeEecC-CCCCceEEE
Confidence 4 232221 123568999999998877654312334444432 22211 1111222 346789999
Q ss_pred CCCCCeeEEE
Q 021399 297 NPDGKRYGFL 306 (313)
Q Consensus 297 spdgk~~~~~ 306 (313)
+|||+++..-
T Consensus 314 spdg~~l~~~ 323 (361)
T 3scy_A 314 TPNGKYLLVA 323 (361)
T ss_dssp CTTSCEEEEE
T ss_pred CCCCCEEEEE
Confidence 9999976543
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.78 E-value=3e-18 Score=160.95 Aligned_cols=276 Identities=8% Similarity=0.002 Sum_probs=166.4
Q ss_pred ceeEEEEccCCCEEEEeeC---------CCCeEEEeCCCCcEE--EEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEE
Q 021399 12 PLTYLKYNKDGDLLFSCAK---------DHTPTVWFADNGERL--GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWN 80 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~---------d~~i~iw~~~~~~~~--~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd 80 (313)
.+.+++|||||++|++++. |+.|++||+++++.+ ..+ ...+..++|||||+.++.++ |+.|++||
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~ 136 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQ 136 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEe
Confidence 3899999999999999886 789999999998763 223 35688899999999998875 78999999
Q ss_pred CCCCeEEEEecCCC-------------------CeeEEEeecCCeEEEEEC-CC-cee---c------------------
Q 021399 81 VETGAQLFTFNFDS-------------------PARSVDFAVGDKLAVITT-DP-FME---L------------------ 118 (313)
Q Consensus 81 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-~~-~~~---~------------------ 118 (313)
+.+++......... ....+.|+|+++.++... +. ... +
T Consensus 137 ~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~ 216 (719)
T 1z68_A 137 RPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPK 216 (719)
T ss_dssp STTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCB
T ss_pred CCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCC
Confidence 98877654321111 113688999876655533 21 000 0
Q ss_pred ------cccceeeeeeeCCCCCCCce---EE-----EecCCCCceEEEEEccCCCEEEEeeCC----CeEEEEE----CC
Q 021399 119 ------NSAIHVKRIARDPADQGGES---VL-----ILKGPQGRINRAVWGPLNRTIISAGED----AIVRIWD----TE 176 (313)
Q Consensus 119 ------~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~i~~~~~~~~~~~i~t~~~d----~~i~lwd----~~ 176 (313)
...+.++++. ++.. +. .+.+|...+..+.|+|+++.+++.... ..|.+|| ..
T Consensus 217 ~g~~~~~~~l~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~ 290 (719)
T 1z68_A 217 AGAKNPVVRIFIIDTT------YPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQ 290 (719)
T ss_dssp TTSCCCEEEEEEEESS------CHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSS
T ss_pred CCCCCCeeEEEEEECC------CCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCC
Confidence 0001111111 1110 00 122466678899999998766664322 3588999 77
Q ss_pred CCceeeecc-cccCceeceE-----EEEECCCCCEEEE--eeCCC--cEEEEECCCCcEEEEEec-CCceeEEEeccCCC
Q 021399 177 TGKLLKESD-KETGHKKTIT-----SLAKAADGSHFLT--GSLDK--SAKLWDARTLELIKTYVT-ERPVNAVTMSPLLD 245 (313)
Q Consensus 177 ~~~~~~~~~-~~~~h~~~v~-----~~~~s~~~~~l~s--~s~dg--~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~~ 245 (313)
+++...... ...+|...+. .++|+|||+.|+. ...+| .|.+||+.+++. ..+.. ...+..+.+. +++
T Consensus 291 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~~~v~~~~~~-d~~ 368 (719)
T 1z68_A 291 TWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSGKWEAINIFRV-TQD 368 (719)
T ss_dssp SEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCSSSCEEEEEEE-CSS
T ss_pred CCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccCceEEEEEEEE-eCC
Confidence 765432221 0024555555 7899999996554 44555 577778877763 33332 3345566666 777
Q ss_pred EEEEcccc-----cCceeEeeccCCCceeeeeeehhhhhhhc-cccccccceeEEEECCCCCeeEEEE
Q 021399 246 HVVLGGGQ-----DASAVTTTDHRAGKFEAKFFDKILQEEIG-GVKGHFGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 246 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~~~fspdgk~~~~~~ 307 (313)
.+++++.. ....++..+...+..+. +++. .+.+|...+..++|+|||+++++..
T Consensus 369 ~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~--------~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~ 428 (719)
T 1z68_A 369 SLFYSSNEFEEYPGRRNIYRISIGSYPPSK--------KCVTCHLRKERCQYYTASFSDYAKYYALVC 428 (719)
T ss_dssp EEEEEESCGGGCTTCBEEEEEECSSSSCCE--------EESSTTTTTTTBCBEEEEECGGGSSEEEEE
T ss_pred EEEEEEecCCCCCceEEEEEEeCCCCCCCc--------eeccCccCCCCCceEEEEECCCCCEEEEEc
Confidence 77766543 11112222211111000 1111 1334677888999999999988753
No 161
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.77 E-value=1.2e-16 Score=137.91 Aligned_cols=256 Identities=11% Similarity=0.010 Sum_probs=160.0
Q ss_pred EEEEccCCCEEEEeeC----------CCCeEEEeCCCCcEEEEecCC------CCceEEEEECCCCCeEEEeeC--CCcE
Q 021399 15 YLKYNKDGDLLFSCAK----------DHTPTVWFADNGERLGTYRGH------NGAVWCCDVSRDSMTLITGSA--DQTA 76 (313)
Q Consensus 15 ~~~fs~~g~~l~s~s~----------d~~i~iw~~~~~~~~~~~~~H------~~~V~~~~~~~~~~~l~s~s~--D~~v 76 (313)
.++|+|||++|++++. ++.|.+||..+.+.+.++... ......++++|||++++++.. +++|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v 133 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 133 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence 8999999999999863 677999999999988877643 234567899999999888763 6899
Q ss_pred EEEECCCCeEEEE-ecCCCC----------eeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCC
Q 021399 77 KLWNVETGAQLFT-FNFDSP----------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP 145 (313)
Q Consensus 77 ~vWd~~~~~~~~~-~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (313)
.+||+.+++.+.. +..... ...+.+.+++++.++..+.. .......... ..+...
T Consensus 134 ~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~------g~~~~~~~~~--------~~~~~~ 199 (361)
T 2oiz_A 134 GIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGED------GKVASQSRSK--------QMFSVK 199 (361)
T ss_dssp EEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTT------SSEEEEEECC--------CCSCTT
T ss_pred EEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCC------CcEeeecccc--------ceEcCC
Confidence 9999999987766 443211 11222333333332221100 0000000000 000011
Q ss_pred CCceEEEEEccCCCEEEEeeCCCeEEEEECCCCce--eeeccccc------Cc-eeceEEEEECCCCCEEEEeeC-----
Q 021399 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKET------GH-KKTITSLAKAADGSHFLTGSL----- 211 (313)
Q Consensus 146 ~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~--~~~~~~~~------~h-~~~v~~~~~s~~~~~l~s~s~----- 211 (313)
..++ .+..++++..++..+.++.+.++|+..... ........ +. ......++++|+++.++.+..
T Consensus 200 ~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~ 278 (361)
T 2oiz_A 200 DDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKE 278 (361)
T ss_dssp TSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCT
T ss_pred CCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCc
Confidence 1111 112245566667777889999999865432 11110000 00 011123678999888777643
Q ss_pred ------CCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhh--hhhcc
Q 021399 212 ------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ--EEIGG 283 (313)
Q Consensus 212 ------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 283 (313)
.++|.+||+++++.+.++.... ...++|+|+++.++++.. +.+ .+||..++ +.++.
T Consensus 279 ~~~~~~~~~v~viD~~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~---~~v------------~v~D~~t~~l~~~~~ 342 (361)
T 2oiz_A 279 GTHKFPAAEIWVMDTKTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG---GNV------------NVYDISQPEPKLLRT 342 (361)
T ss_dssp TCTTCCCSEEEEEETTTTEEEEEEECTT-CCEEEEETTTTEEEEECS---SCE------------EEEECSSSSCEEEEE
T ss_pred ccccCCCceEEEEECCCCcEEEEEecCC-eeEEEECCCCCEEEEeCC---CeE------------EEEECCCCcceeeEE
Confidence 3479999999999999988777 999999999998887653 334 44555555 55555
Q ss_pred ccccccceeEEEECCCCC
Q 021399 284 VKGHFGPINALAFNPDGK 301 (313)
Q Consensus 284 ~~~h~~~V~~~~fspdgk 301 (313)
+..+...-..++|+|||+
T Consensus 343 i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 343 IEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ETTSCSSEEEEEECCCSC
T ss_pred eccCCCCcEEEEecCCCC
Confidence 445666778999999997
No 162
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=7.4e-17 Score=139.35 Aligned_cols=237 Identities=10% Similarity=0.068 Sum_probs=150.6
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCC-CCcEEEEecC-CCCceEEEEECCCCCe--EEEee-------------CC
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFAD-NGERLGTYRG-HNGAVWCCDVSRDSMT--LITGS-------------AD 73 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~-~~~~~~~~~~-H~~~V~~~~~~~~~~~--l~s~s-------------~D 73 (313)
..+..++|+|||++|++++.+ .|.+|+++ +++....... ..+....++|+|+|+. +++++ .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 467889999999999999988 99999987 7766443321 0123556889999984 55654 68
Q ss_pred CcEEEEECCC-CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe-cCCCCceEE
Q 021399 74 QTAKLWNVET-GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL-KGPQGRINR 151 (313)
Q Consensus 74 ~~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 151 (313)
+++++|++.. ++...... .+ ..+...+..
T Consensus 119 g~v~v~~~~~~g~~~~~~~-------------------------------------------------~~~~~~~~~~~~ 149 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQ-------------------------------------------------NYEYQENTGIHG 149 (365)
T ss_dssp CEEEEEEECTTCCEEEEEE-------------------------------------------------EEECCTTCCEEE
T ss_pred ceEEEEccCCCCcCcceEe-------------------------------------------------eEEeCCCCcceE
Confidence 9999999863 43221100 00 012345778
Q ss_pred EEEccCCCEEEEee-CCCeEEEEECC-CCceeeecccc-cCceeceEEEEECCCCCEEEEeeC-CCcEEEEECC--CCcE
Q 021399 152 AVWGPLNRTIISAG-EDAIVRIWDTE-TGKLLKESDKE-TGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDAR--TLEL 225 (313)
Q Consensus 152 ~~~~~~~~~i~t~~-~d~~i~lwd~~-~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd~~--~~~~ 225 (313)
+.|+|++++++++. .++.|++||+. +++........ ..|...+..++|+|||+++++++. +++|.+|+++ +++.
T Consensus 150 ~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~ 229 (365)
T 1jof_A 150 MVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMP 229 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcE
Confidence 89999999887765 46799999998 66542211111 123456899999999999888775 7899999765 5654
Q ss_pred EE---EEe---cC----C-------ceeEEE-eccCCCEEEEcccccC----ceeEeeccC-CCceeeeeeehhhhhhhc
Q 021399 226 IK---TYV---TE----R-------PVNAVT-MSPLLDHVVLGGGQDA----SAVTTTDHR-AGKFEAKFFDKILQEEIG 282 (313)
Q Consensus 226 ~~---~~~---~~----~-------~~~~~~-~~p~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 282 (313)
.. .+. .. . .+..++ |+|+++.++++..... ..+.+|+.. .+.... .. .
T Consensus 230 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~-~~--------~ 300 (365)
T 1jof_A 230 VYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK-QL--------F 300 (365)
T ss_dssp EEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE-EE--------E
T ss_pred EEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE-ee--------e
Confidence 32 222 11 1 377899 9999998877643222 134444432 222110 00 0
Q ss_pred cccccccceeEEEECC---CCCeeEEE
Q 021399 283 GVKGHFGPINALAFNP---DGKRYGFL 306 (313)
Q Consensus 283 ~~~~h~~~V~~~~fsp---dgk~~~~~ 306 (313)
....+...+..++|+| ||++++..
T Consensus 301 ~~~~~~~~~~~~a~sp~~~dg~~l~v~ 327 (365)
T 1jof_A 301 LSPTPTSGGHSNAVSPCPWSDEWMAIT 327 (365)
T ss_dssp EEECSSCCTTCCCEEECTTCTTEEEEE
T ss_pred eeecCCCCcccceecCCCcCCCEEEEE
Confidence 0112344567889999 89987654
No 163
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=1.5e-16 Score=138.34 Aligned_cols=278 Identities=13% Similarity=0.091 Sum_probs=158.3
Q ss_pred eeEEEEccCCCEEEEeeCC---CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399 13 LTYLKYNKDGDLLFSCAKD---HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~d---~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~ 89 (313)
+..++|||||++|+..+.+ ..|.+||.++++......++......+.|+|||+.|+.++.++.+.+||+.+++....
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~ 117 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI 117 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence 7788999999998877543 3577789888876544333333333478999999999999999999999998876554
Q ss_pred ecCCCCeeEEEeecCCeEEEEEC----------------CCce-ec------cccceeeeeeeCCCCCCCceEEEecCCC
Q 021399 90 FNFDSPARSVDFAVGDKLAVITT----------------DPFM-EL------NSAIHVKRIARDPADQGGESVLILKGPQ 146 (313)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (313)
...... +.++++.++... +... .. .....++.+ +. ..++... +..+.
T Consensus 118 ~~~~~~-----~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~--d~--~~g~~~~-~~~~~ 187 (396)
T 3c5m_A 118 YTVDEE-----WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKV--DI--ETGELEV-IHQDT 187 (396)
T ss_dssp EECCTT-----EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEE--ET--TTCCEEE-EEEES
T ss_pred Eecccc-----cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEE--EC--CCCcEEe-eccCC
Confidence 432221 111111111100 0000 00 000111111 11 1122222 22345
Q ss_pred CceEEEEEcc-CCCEEEEeeCC------CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC-----Cc
Q 021399 147 GRINRAVWGP-LNRTIISAGED------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KS 214 (313)
Q Consensus 147 ~~i~~~~~~~-~~~~i~t~~~d------~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----g~ 214 (313)
..+..+.|+| ++..++..+.+ ..|.+||+..++. ..+.. ......+..++|+|||++|+.++.+ +.
T Consensus 188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 265 (396)
T 3c5m_A 188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRV 265 (396)
T ss_dssp SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEE
T ss_pred cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeec-cCCCccccceEECCCCCEEEEEecCCCCccce
Confidence 5678899999 78777766543 4688899876543 22221 1113457889999999988877654 44
Q ss_pred EEEEECCCCcEEEEEecCCceeEEEecc-CCCEEEEcccccCceeEeec----cCCCceeeeeeehhhhhhhcccccccc
Q 021399 215 AKLWDARTLELIKTYVTERPVNAVTMSP-LLDHVVLGGGQDASAVTTTD----HRAGKFEAKFFDKILQEEIGGVKGHFG 289 (313)
Q Consensus 215 i~iwd~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~ 289 (313)
|++||+++++.......+. .. ++|+| ++..++.++.. ..+...+ ...+...+..||..+++. ..+..|..
T Consensus 266 l~~~d~~~g~~~~l~~~~~-~~-~~~s~~dg~~l~~~~~~--~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~ 340 (396)
T 3c5m_A 266 IYKANPETLENEEVMVMPP-CS-HLMSNFDGSLMVGDGCD--APVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHST 340 (396)
T ss_dssp EEEECTTTCCEEEEEECCS-EE-EEEECSSSSEEEEEECC--C----------CCCCCCEEEEEETTTTBC-CEEEECCC
T ss_pred EEEEECCCCCeEEeeeCCC-CC-CCccCCCCceEEEecCC--cceeeccccccccCCCCcEEEEecccCce-EEccCCCC
Confidence 9999999887644332222 33 88999 98866654321 0000000 001122344555443332 22333433
Q ss_pred -----------ceeEEEECCCCCeeEEEE
Q 021399 290 -----------PINALAFNPDGKRYGFLL 307 (313)
Q Consensus 290 -----------~V~~~~fspdgk~~~~~~ 307 (313)
.+..++|+|||+.++|..
T Consensus 341 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~s 369 (396)
T 3c5m_A 341 SWDVLDGDRQITHPHPSFTPNDDGVLFTS 369 (396)
T ss_dssp CCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred ccccccccccCCCCCceEccCCCeEEEEe
Confidence 256789999999998865
No 164
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.76 E-value=2.3e-15 Score=128.13 Aligned_cols=242 Identities=15% Similarity=0.146 Sum_probs=165.7
Q ss_pred ccceeEEEEccCCCEEEEeeCC------------------------CCeEEEeCCCCcEEEEec-CCCCceEEEEECCCC
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKD------------------------HTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDS 64 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d------------------------~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~~ 64 (313)
.+.+.+++++|+|+++++.+.+ +.|.+||.++++.+..+. ++-.....++++++|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 4568899999999999988887 479999999998877665 455678999999999
Q ss_pred CeEEEeeCCCcEEEEECCCCe-EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec
Q 021399 65 MTLITGSADQTAKLWNVETGA-QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK 143 (313)
Q Consensus 65 ~~l~s~s~D~~v~vWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (313)
+++++...++.|++||..... .+..+.... .. +. -.
T Consensus 103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~------------------------------------~~---g~----~~ 139 (329)
T 3fvz_A 103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSM------------------------------------QP---GS----DQ 139 (329)
T ss_dssp CEEEEETTTTEEEEECTTCSSCCSEEESBTT------------------------------------BC---CC----ST
T ss_pred CEEEEECCCCEEEEEeCCCCeEEEEEecccC------------------------------------CC---CC----Cc
Confidence 988988889999999976432 111110000 00 00 01
Q ss_pred CCCCceEEEEEcc-CCCEEEEee-CCCeEEEEECCCCceeeecccc-------cCceeceEEEEECCC-CCEEEEeeCCC
Q 021399 144 GPQGRINRAVWGP-LNRTIISAG-EDAIVRIWDTETGKLLKESDKE-------TGHKKTITSLAKAAD-GSHFLTGSLDK 213 (313)
Q Consensus 144 ~~~~~i~~~~~~~-~~~~i~t~~-~d~~i~lwd~~~~~~~~~~~~~-------~~h~~~v~~~~~s~~-~~~l~s~s~dg 213 (313)
++......++++| +++.+++.+ .++.|++|| .+++.+..+... .++-.....++++|+ +..+++...++
T Consensus 140 ~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~ 218 (329)
T 3fvz_A 140 NHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENG 218 (329)
T ss_dssp TCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTT
T ss_pred cccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCC
Confidence 2234567888999 788778776 689999999 456655544211 123345889999998 77778888899
Q ss_pred cEEEEECCCCcEEEEEec---CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccc---ccc
Q 021399 214 SAKLWDARTLELIKTYVT---ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV---KGH 287 (313)
Q Consensus 214 ~i~iwd~~~~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h 287 (313)
.|++||.++++.+..+.. ...+..++++| ..++...+. +++.+. ....++.|+..+++.+..+ .++
T Consensus 219 ~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~----~~v~~~--~~~~v~~~~~~~g~~~~~~~~~~~~ 290 (329)
T 3fvz_A 219 RIQCFKTDTKEFVREIKHASFGRNVFAISYIP--GFLFAVNGK----PYFGDQ--EPVQGFVMNFSSGEIIDVFKPVRKH 290 (329)
T ss_dssp EEEEEETTTCCEEEEECCTTTTTCEEEEEEET--TEEEEEECC----CCTTCS--CCCCEEEEETTTCCEEEEECCSSSC
T ss_pred EEEEEECCCCcEEEEEeccccCCCcceeeecC--CEEEEeCCC----EEeccC--CCcEEEEEEcCCCeEEEEEcCCCCc
Confidence 999999998998888742 34577899999 444443322 111111 1123455665555554443 356
Q ss_pred ccceeEEEECCCCCee
Q 021399 288 FGPINALAFNPDGKRY 303 (313)
Q Consensus 288 ~~~V~~~~fspdgk~~ 303 (313)
.....+|+|+|||+.+
T Consensus 291 ~~~p~~ia~~~dG~ly 306 (329)
T 3fvz_A 291 FDMPHDIVASEDGTVY 306 (329)
T ss_dssp CSSEEEEEECTTSEEE
T ss_pred cCCeeEEEECCCCCEE
Confidence 7788999999999544
No 165
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.75 E-value=4.8e-16 Score=132.69 Aligned_cols=213 Identities=12% Similarity=0.065 Sum_probs=141.9
Q ss_pred ceeEEEEccCCCEEE-EeeCCCCeEEEeCCCCcEEEEecCCC------CceEEEEECCCCCeEEEeeCC-----------
Q 021399 12 PLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHN------GAVWCCDVSRDSMTLITGSAD----------- 73 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~-s~s~d~~i~iw~~~~~~~~~~~~~H~------~~V~~~~~~~~~~~l~s~s~D----------- 73 (313)
.+..++|+|+|++++ +...++.|.+||.++++.+..+..+. ..+.+++|+|+|+.+++++.+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence 578899999998665 55578999999999998887776432 237789999999999988865
Q ss_pred -CcEEEEECCCCe---EEEEecCCCCeeEEEeecCCeEEEEECCCceeccc--cceeeeeeeCC----------------
Q 021399 74 -QTAKLWNVETGA---QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNS--AIHVKRIARDP---------------- 131 (313)
Q Consensus 74 -~~v~vWd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------- 131 (313)
+.|.+||+.+++ .+........+..+.|++++++.+ ........+. ......+....
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV-AGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP 202 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE-ESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCC
T ss_pred CCeEEEEECCCccccceeeeccCCCcccceeECCCCcEEE-ccCcEEEEeCCCCceeccccccccCCccccCccceeeec
Confidence 999999998743 223333334456677888777433 3322211111 00001110000
Q ss_pred -CCC------------------------------------CCceEEEecCCCCceEEEEEcc-CCCEEEEeeCCCeEEEE
Q 021399 132 -ADQ------------------------------------GGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIW 173 (313)
Q Consensus 132 -~~~------------------------------------~~~~~~~~~~~~~~i~~~~~~~-~~~~i~t~~~d~~i~lw 173 (313)
... ..........+...+..+.++| ++++++++ ++.|.+|
T Consensus 203 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~ 280 (349)
T 1jmx_B 203 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKY 280 (349)
T ss_dssp CCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEE
T ss_pred CCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEE
Confidence 000 0000000111223456778889 99988887 8899999
Q ss_pred ECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec
Q 021399 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (313)
Q Consensus 174 d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 231 (313)
|+.+++.+..+. ....+.+++|+|+|++|++++.++.|++||+++++.+..+..
T Consensus 281 d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 281 DLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp ETTTTEEEEEEE----CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred ECccCeEEEEEc----CCCCccceEECCCCCEEEEecCCCeEEEEeccccceeeeeec
Confidence 999888766543 123467899999999999988899999999999988877643
No 166
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=9.1e-15 Score=121.67 Aligned_cols=228 Identities=12% Similarity=0.134 Sum_probs=154.3
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec------CCCCceEEEEE-CCCCCeEEEeeC-CCcEEE
Q 021399 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR------GHNGAVWCCDV-SRDSMTLITGSA-DQTAKL 78 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~------~H~~~V~~~~~-~~~~~~l~s~s~-D~~v~v 78 (313)
.+|...+.+++++++|+++++.+.++.|++||.+ ++.+..+. +|...+..+++ .++++++++... ++.|++
T Consensus 26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~ 104 (286)
T 1q7f_A 26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI 104 (286)
T ss_dssp TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred CCccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEE
Confidence 4566778999999999999988889999999976 66666653 34467889999 577777776643 889999
Q ss_pred EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (313)
Q Consensus 79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (313)
||. +++.+..+.. .+...+..++++|++
T Consensus 105 ~d~-~g~~~~~~~~---------------------------------------------------~~~~~~~~i~~~~~g 132 (286)
T 1q7f_A 105 YNQ-YGQFVRKFGA---------------------------------------------------TILQHPRGVTVDNKG 132 (286)
T ss_dssp ECT-TSCEEEEECT---------------------------------------------------TTCSCEEEEEECTTS
T ss_pred ECC-CCcEEEEecC---------------------------------------------------ccCCCceEEEEeCCC
Confidence 994 4443221100 012245677788888
Q ss_pred CEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC---Cce
Q 021399 159 RTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---RPV 235 (313)
Q Consensus 159 ~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~~~ 235 (313)
+.+++...++.|++||.. ++.+..+.. ..+...+..++++++|+.+++.+.++.|++||.. ++.+..+... ..+
T Consensus 133 ~l~v~~~~~~~i~~~~~~-g~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p 209 (286)
T 1q7f_A 133 RIIVVECKVMRVIIFDQN-GNVLHKFGC-SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYP 209 (286)
T ss_dssp CEEEEETTTTEEEEECTT-SCEEEEEEC-TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSE
T ss_pred CEEEEECCCCEEEEEcCC-CCEEEEeCC-CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCC
Confidence 888877788999999964 444444321 1344568999999999988888889999999974 5566665432 457
Q ss_pred eEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccc--ccceeEEEECCCCCeeE
Q 021399 236 NAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH--FGPINALAFNPDGKRYG 304 (313)
Q Consensus 236 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~~~fspdgk~~~ 304 (313)
..++++|++.. +++...+...+..++.. +.+ +..+..+ ...+.+++|+|||+.+.
T Consensus 210 ~~i~~d~~G~l-~v~~~~~~~~i~~~~~~-g~~------------~~~~~~~~~~~~~~~i~~~~~g~l~v 266 (286)
T 1q7f_A 210 IGVGINSNGEI-LIADNHNNFNLTIFTQD-GQL------------ISALESKVKHAQCFDVALMDDGSVVL 266 (286)
T ss_dssp EEEEECTTCCE-EEEECSSSCEEEEECTT-SCE------------EEEEEESSCCSCEEEEEEETTTEEEE
T ss_pred cEEEECCCCCE-EEEeCCCCEEEEEECCC-CCE------------EEEEcccCCCCcceeEEECCCCcEEE
Confidence 88999998864 44433222245555532 221 1111112 23478999999998654
No 167
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.72 E-value=1.4e-16 Score=146.05 Aligned_cols=226 Identities=11% Similarity=0.034 Sum_probs=141.9
Q ss_pred CCceEEEEECCCCCeEEEeeC-CCcEEEEECCCCeEEEEecCC-CCeeEEEeecCCeEEEEECCCceeccccceeeeeee
Q 021399 52 NGAVWCCDVSRDSMTLITGSA-DQTAKLWNVETGAQLFTFNFD-SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR 129 (313)
Q Consensus 52 ~~~V~~~~~~~~~~~l~s~s~-D~~v~vWd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (313)
..+|++++|+|||+.+++++. ||+++||++++++........ ..+..+.|+|+ ++++...... ......++.+..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~--g~~~~~l~~~~~ 97 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSK--GAEQHALFKVNT 97 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECST--TSCCEEEEEEET
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCC--CCcceEEEEEec
Confidence 567999999999999998886 999999999777665544443 35667788877 6554432100 001112222211
Q ss_pred CCCCCCCceEEEecCCCCceEEEEEccCCC--EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEE
Q 021399 130 DPADQGGESVLILKGPQGRINRAVWGPLNR--TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL 207 (313)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 207 (313)
. .. +... .+... .......|+|+++ .+++++.+ .+.+||+.+++..+... +.. .+++|+|||++|+
T Consensus 98 ~--~~-g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~----~~~--~~~~~spDG~~la 165 (582)
T 3o4h_A 98 S--RP-GEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELAR----LPG--FGFVSDIRGDLIA 165 (582)
T ss_dssp T--ST-TCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEE----ESS--CEEEEEEETTEEE
T ss_pred c--CC-Cccc-cccCC-CCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeec----CCC--ceEEECCCCCEEE
Confidence 0 01 1111 22222 2234567888875 34444444 45599998876533221 222 7889999999999
Q ss_pred EeeCC----CcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcc
Q 021399 208 TGSLD----KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGG 283 (313)
Q Consensus 208 s~s~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (313)
+++.| +.|++||+++++...-..+...+..++|+|++..++.+. .++ ...+.+||..+++.. .
T Consensus 166 ~~~~~~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~SpDG~~l~~~~-~~~-----------~~~i~~~d~~~~~~~-~ 232 (582)
T 3o4h_A 166 GLGFFGGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLE-TAR-----------EARLVTVDPRDGSVE-D 232 (582)
T ss_dssp EEEEEETTEEEEEEEETTTCCCEEECCSSCEEEEEEECTTSCEEEEEE-CSS-----------CEEEEEECTTTCCEE-E
T ss_pred EEEEcCCCCeEEEEEcCCCCCceEeecCCCccccceECCCCCEEEEcc-CCC-----------eeEEEEEcCCCCcEE-E
Confidence 88887 789999999988754333456689999999999888332 221 123445555444443 4
Q ss_pred ccccccceeEEE--------ECCCCCeeEEE
Q 021399 284 VKGHFGPINALA--------FNPDGKRYGFL 306 (313)
Q Consensus 284 ~~~h~~~V~~~~--------fspdgk~~~~~ 306 (313)
+.+|...+..++ ||||| .+.|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~ 262 (582)
T 3o4h_A 233 LELPSKDFSSYRPTAITWLGYLPDG-RLAVV 262 (582)
T ss_dssp CCCSCSHHHHHCCSEEEEEEECTTS-CEEEE
T ss_pred ccCCCcChhhhhhccccceeEcCCC-cEEEE
Confidence 556777777777 99999 44443
No 168
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.71 E-value=2.4e-14 Score=119.78 Aligned_cols=235 Identities=11% Similarity=0.035 Sum_probs=161.8
Q ss_pred ccccccccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 4 ILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
..+..+.....+++|+|+|+ .++++..++.|..|+.+++ ...+..+...+.+++++++|+++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 34556667788999999998 7888888999999999877 56777788889999999999988877778999999997
Q ss_pred CCeEEEEecC-----CCCeeEEEeecCCeEEEEECC-Ccee--------c-cccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399 83 TGAQLFTFNF-----DSPARSVDFAVGDKLAVITTD-PFME--------L-NSAIHVKRIARDPADQGGESVLILKGPQG 147 (313)
Q Consensus 83 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (313)
+++....... ...+..+.+.+++.+.+.... .... . .....++.+. . .+. ...+..+..
T Consensus 99 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~--~---~g~-~~~~~~~~~ 172 (296)
T 3e5z_A 99 GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA--P---DGT-LSAPIRDRV 172 (296)
T ss_dssp TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC--T---TSC-EEEEECCCS
T ss_pred CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC--C---CCC-EEEeecCCC
Confidence 7765433221 123345677777766554211 0000 0 0001222221 1 111 223344555
Q ss_pred ceEEEEEccCCCEEEEeeCCCeEEEEECC-CCce---eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCC
Q 021399 148 RINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKL---LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTL 223 (313)
Q Consensus 148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~-~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~ 223 (313)
..+.++|+|+++.+++.+.++.|++||+. +++. ...+ ..+...+..++++++|+..++. ++.|.+||.+ +
T Consensus 173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~---~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g 246 (296)
T 3e5z_A 173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF---TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-G 246 (296)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE---CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-S
T ss_pred CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe---eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-C
Confidence 67889999999988777788999999986 4443 1222 1244556789999999876666 7899999987 7
Q ss_pred cEEEEEecCCceeEEEe-ccCCCEEEEccc
Q 021399 224 ELIKTYVTERPVNAVTM-SPLLDHVVLGGG 252 (313)
Q Consensus 224 ~~~~~~~~~~~~~~~~~-~p~~~~~~~~~~ 252 (313)
+.+..+..+..+.+++| .|+++.++++..
T Consensus 247 ~~~~~~~~~~~~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 247 DELGRVLTPQTTSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp CEEEEEECSSCCCEEEEESTTSCEEEEEET
T ss_pred CEEEEEECCCCceeEEEECCCCCEEEEEcC
Confidence 77777764434888999 588888887653
No 169
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.70 E-value=8.9e-16 Score=144.62 Aligned_cols=281 Identities=8% Similarity=0.004 Sum_probs=163.1
Q ss_pred EEEEccCCCEEEEeeCC---------CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399 15 YLKYNKDGDLLFSCAKD---------HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (313)
Q Consensus 15 ~~~fs~~g~~l~s~s~d---------~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~ 85 (313)
.+.|||||++|+.++.+ +.+.+||+++++.. .+..|.+.+...+|||||+.++.+ .|+.|++||+.+++
T Consensus 66 ~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 66 DYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP 143 (740)
T ss_dssp EEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred ceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence 47889999999999887 45569999998754 577788899999999999998887 57899999998877
Q ss_pred EEEEecCCC-------------------CeeEEEeecCCeEEEEEC-CCc----eecc--cc-----ceeeeeeeCC---
Q 021399 86 QLFTFNFDS-------------------PARSVDFAVGDKLAVITT-DPF----MELN--SA-----IHVKRIARDP--- 131 (313)
Q Consensus 86 ~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-~~~----~~~~--~~-----~~~~~~~~~~--- 131 (313)
......... ....+.|+|+++.++... +.. +.+. .. .....+....
T Consensus 144 ~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 144 SYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA 223 (740)
T ss_dssp CEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred eEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence 543321111 112477999877555432 211 0000 00 0000000000
Q ss_pred ----------CCCC---Cc--eEEEec------CCCCceEEEEEccCCCEEEEee----CCCeEEEEECCCCc----eee
Q 021399 132 ----------ADQG---GE--SVLILK------GPQGRINRAVWGPLNRTIISAG----EDAIVRIWDTETGK----LLK 182 (313)
Q Consensus 132 ----------~~~~---~~--~~~~~~------~~~~~i~~~~~~~~~~~i~t~~----~d~~i~lwd~~~~~----~~~ 182 (313)
...+ +. ....+. ++...+..+.|+|+++.++... .+..|++||+.+++ +..
T Consensus 224 ~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~ 303 (740)
T 4a5s_A 224 VNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLV 303 (740)
T ss_dssp CCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECG
T ss_pred cCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeE
Confidence 0001 10 122222 2566688999999998666543 34579999998876 221
Q ss_pred eccc-ccCceeceE-----EEEECCCCCEEE-EeeC-C--CcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEccc
Q 021399 183 ESDK-ETGHKKTIT-----SLAKAADGSHFL-TGSL-D--KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 183 ~~~~-~~~h~~~v~-----~~~~s~~~~~l~-s~s~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 252 (313)
.... ...|...+. ..+|+|||+.|+ ..+. + ..|.+||+.++++.........+..+. .++++.++..+.
T Consensus 304 ~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~-~~d~~~i~f~~~ 382 (740)
T 4a5s_A 304 ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIE-ALTSDYLYYISN 382 (740)
T ss_dssp GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEE-EECSSEEEEEES
T ss_pred EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEE-EEeCCEEEEEEe
Confidence 1100 123444443 678999999877 6653 3 468889998877654333333444433 244666665543
Q ss_pred c--c---CceeEeeccCCCceeeeeeehhhhhhhc-cccccccceeEEEECCCCCeeEEEE
Q 021399 253 Q--D---ASAVTTTDHRAGKFEAKFFDKILQEEIG-GVKGHFGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 253 ~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~~~fspdgk~~~~~~ 307 (313)
. + ...++..+...+.. .+++. .+.+....+...+|||||+++++..
T Consensus 383 ~~~~~~~~~~ly~v~~~g~~~---------~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~ 434 (740)
T 4a5s_A 383 EYKGMPGGRNLYKIQLIDYTK---------VTCLSCELNPERCQYYSVSFSKEAKYYQLRC 434 (740)
T ss_dssp CGGGCTTCBEEEEEETTEEEE---------EEESSTTTSTTTBCBEEEEECTTSSEEEEEE
T ss_pred cCCCCCceeEEEEEECCCCCc---------ceeeccccCCCCCceEEEEECCCCCEEEEEe
Confidence 2 1 11222222111000 00111 1112345788999999999887654
No 170
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.70 E-value=1.4e-15 Score=131.99 Aligned_cols=240 Identities=11% Similarity=0.014 Sum_probs=152.3
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEE--ECCCCCeEEE--------------
Q 021399 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCD--VSRDSMTLIT-------------- 69 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~--~~~~~~~l~s-------------- 69 (313)
..+|...+..+.|+|||++|+.++.++.+++||+.+++....+..+.+.+.... ++++++.++.
T Consensus 76 t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~ 155 (388)
T 3pe7_A 76 TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDW 155 (388)
T ss_dssp CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccccc
Confidence 345555556788999999999999999999999999988777777777665444 4899988763
Q ss_pred --------eeCCCcEEEEECCCCeEEEEecCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEE
Q 021399 70 --------GSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL 140 (313)
Q Consensus 70 --------~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (313)
.+.+..|.+||+.+++.............+.|+| +++.++....... ......++.+..+ +....
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~-~~~~~~l~~~d~~-----~~~~~ 229 (388)
T 3pe7_A 156 KKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPH-DLVDARMWLINED-----GTNMR 229 (388)
T ss_dssp HHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCT-TTSSCSEEEEETT-----SCCCE
T ss_pred chhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCC-CCCcceEEEEeCC-----CCceE
Confidence 3355789999999987766555555677888999 7765554332100 0001112211110 11122
Q ss_pred EecCCC--CceEEEEEccCCCEEEEeeCC-----CeEEEEECCCCceeeecccccCceec---eEEEEECCCCCEEEEe-
Q 021399 141 ILKGPQ--GRINRAVWGPLNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKT---ITSLAKAADGSHFLTG- 209 (313)
Q Consensus 141 ~~~~~~--~~i~~~~~~~~~~~i~t~~~d-----~~i~lwd~~~~~~~~~~~~~~~h~~~---v~~~~~s~~~~~l~s~- 209 (313)
.+..+. ..+....|+|+|+.|+..+.+ ..|++||+.+++... +....++... ....+|+|||+.|+..
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~~~~~~~spdg~~l~~~~ 308 (388)
T 3pe7_A 230 KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQ-LTSMPACSHLMSNYDGSLMVGDGSDAPVDV 308 (388)
T ss_dssp ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEE-EEEECCEEEEEECTTSSEEEEEECCC----
T ss_pred EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEE-EEcCCCceeeeecCCCCeEccCCCcceeEe
Confidence 222233 246778999999977664431 249999998876422 1111121111 1123689999988754
Q ss_pred --------eCCCcEEEEECCCCcEEEEEecCC-----------ceeEEEeccCCCEEEEccc
Q 021399 210 --------SLDKSAKLWDARTLELIKTYVTER-----------PVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 210 --------s~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~~p~~~~~~~~~~ 252 (313)
..+..|.+||+++++...-..... .+..++|+|++..++.++.
T Consensus 309 ~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~ 370 (388)
T 3pe7_A 309 QDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSD 370 (388)
T ss_dssp --------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred eeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEec
Confidence 446689999999877643333333 3678899999998887653
No 171
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.70 E-value=2.7e-15 Score=139.53 Aligned_cols=287 Identities=12% Similarity=-0.020 Sum_probs=170.9
Q ss_pred ccccccccceeEEEEccCCCEEEEe--eCCCCeEEEeCCCCcEEEEecCCCCceE---------EEEEC--CCCCe-EEE
Q 021399 4 ILMKGHERPLTYLKYNKDGDLLFSC--AKDHTPTVWFADNGERLGTYRGHNGAVW---------CCDVS--RDSMT-LIT 69 (313)
Q Consensus 4 ~~l~~h~~~v~~~~fs~~g~~l~s~--s~d~~i~iw~~~~~~~~~~~~~H~~~V~---------~~~~~--~~~~~-l~s 69 (313)
..+.+|...+..++|++++-++++. +.++...||....+.....+..|...+. ...|+ |||+. ++.
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~ 96 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF 96 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence 3577899999999999887777777 5688999998655555667777776665 55555 99987 655
Q ss_pred ee-CCCcEEEEECC--C-CeEEEEec-----CCCCeeEEEeecCCeEEEEECCCce-----eccccceeeeeeeCCCCCC
Q 021399 70 GS-ADQTAKLWNVE--T-GAQLFTFN-----FDSPARSVDFAVGDKLAVITTDPFM-----ELNSAIHVKRIARDPADQG 135 (313)
Q Consensus 70 ~s-~D~~v~vWd~~--~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 135 (313)
++ .+..|.+|++. + ++...... .......+.|+|+++.++....... .....+..+++........
T Consensus 97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 176 (662)
T 3azo_A 97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADR 176 (662)
T ss_dssp EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCG
T ss_pred EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccC
Confidence 44 35667777765 3 44332222 1224567789988765554432100 0001111111110000000
Q ss_pred CceEEEec-CCCCceEEEEEccCCCEEEEeeCC--------CeEEEEECC-CCc--eeeecccccCceeceEEEEECCCC
Q 021399 136 GESVLILK-GPQGRINRAVWGPLNRTIISAGED--------AIVRIWDTE-TGK--LLKESDKETGHKKTITSLAKAADG 203 (313)
Q Consensus 136 ~~~~~~~~-~~~~~i~~~~~~~~~~~i~t~~~d--------~~i~lwd~~-~~~--~~~~~~~~~~h~~~v~~~~~s~~~ 203 (313)
+. ...+. .+...+..+.|+|+|++|+.++.+ ..|++||+. ++. ....+. .+|...+..++|+|||
T Consensus 177 ~~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~--~~~~~~~~~~~~spdg 253 (662)
T 3azo_A 177 SA-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL--GGPEEAIAQAEWAPDG 253 (662)
T ss_dssp GG-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE--EETTBCEEEEEECTTS
T ss_pred Cc-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC--CCCCceEcceEECCCC
Confidence 12 22333 445667788999999999887754 479999998 562 222222 2346788999999999
Q ss_pred CEEEEeeCCC--cEEEEECCCCcEEEEEecCCc---------eeEEEeccCCCEEEEcccccCceeEeeccCCCceeeee
Q 021399 204 SHFLTGSLDK--SAKLWDARTLELIKTYVTERP---------VNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKF 272 (313)
Q Consensus 204 ~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~~---------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (313)
+.+++++.|+ .|.+||+++++.......... +..++|+|++..++.+.. ... .+..
T Consensus 254 ~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~------------~l~~ 320 (662)
T 3azo_A 254 SLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAA------------VLGI 320 (662)
T ss_dssp CEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSC------------EEEE
T ss_pred eEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-Ccc------------EEEE
Confidence 9888888888 666677767765443332222 356777777665544432 221 2222
Q ss_pred eehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 273 FDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 273 ~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
+|...++ +..+..|.+.+..+. ++|++.+.|...
T Consensus 321 ~d~~~~~-~~~l~~~~~~~~~~~-s~~~~~~~~~~~ 354 (662)
T 3azo_A 321 LDPESGE-LVDAAGPWTEWAATL-TVSGTRAVGVAA 354 (662)
T ss_dssp EETTTTE-EEECCSSCCEEEEEE-EEETTEEEEEEE
T ss_pred EECCCCc-EEEecCCCCeEEEEE-ecCCCEEEEEEc
Confidence 2333222 344556777777662 667777777654
No 172
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.69 E-value=1.8e-14 Score=119.44 Aligned_cols=191 Identities=12% Similarity=0.089 Sum_probs=142.2
Q ss_pred CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCC-CceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEE
Q 021399 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSV 99 (313)
Q Consensus 21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~ 99 (313)
.++.|++++.|+.|.+||.++++.+.++..+. ..+.++++.|+|++++ +.++.|+.||. +++.++.+...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~------ 74 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAP------ 74 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECC------
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCC------
Confidence 46899999999999999999999999998876 4788999999999888 45778999998 67766544311
Q ss_pred EeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC-CCeEEEEECCCC
Q 021399 100 DFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE-DAIVRIWDTETG 178 (313)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~-d~~i~lwd~~~~ 178 (313)
....+.++.+.++++.+++.+. ++.|..+|. ++
T Consensus 75 ---------------------------------------------~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~G 108 (276)
T 3no2_A 75 ---------------------------------------------AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KG 108 (276)
T ss_dssp ---------------------------------------------TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TS
T ss_pred ---------------------------------------------CCccccccEECCCCCEEEEecCCCCEEEEEeC-CC
Confidence 0113445667788888888776 777888886 56
Q ss_pred ceeeecccc---cCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccC
Q 021399 179 KLLKESDKE---TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDA 255 (313)
Q Consensus 179 ~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 255 (313)
+.+.++... ..+......++..++|+++++.+.++.|..||.+ ++.+.++........+...+.++.++++.. .
T Consensus 109 k~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~--~ 185 (276)
T 3no2_A 109 EVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGD--A 185 (276)
T ss_dssp CEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBT--T
T ss_pred CEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCC--C
Confidence 655544321 1222345566789999999999999999999998 999988876666777888888877665433 3
Q ss_pred ceeEeeccCCCcee
Q 021399 256 SAVTTTDHRAGKFE 269 (313)
Q Consensus 256 ~~~~~~~~~~~~~~ 269 (313)
..+..+|...++..
T Consensus 186 ~~v~~~d~~tG~~~ 199 (276)
T 3no2_A 186 HCFVQLNLESNRIV 199 (276)
T ss_dssp SEEEEECTTTCCEE
T ss_pred CeEEEEeCcCCcEE
Confidence 45777787766553
No 173
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.69 E-value=6.8e-15 Score=137.98 Aligned_cols=236 Identities=11% Similarity=-0.003 Sum_probs=150.0
Q ss_pred ccccceeEEEEccCCCEEEEeeCCC-----CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCc-------
Q 021399 8 GHERPLTYLKYNKDGDLLFSCAKDH-----TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT------- 75 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~s~s~d~-----~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~------- 75 (313)
+|...+..++|||||++|+.++.++ .|++||+++++.+.....+ ..+..++|+|||+.|+.++.|+.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~ 200 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT 200 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence 3445678899999999999776543 8999999999876532222 22667899999999988887765
Q ss_pred ---------EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCC
Q 021399 76 ---------AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 146 (313)
Q Consensus 76 ---------v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (313)
|++|++.+++.. ...+.....+.
T Consensus 201 ~~~~~~~~~v~~~~l~t~~~~------------------------------------------------~~~v~~~~~~~ 232 (710)
T 2xdw_A 201 ETSTNLHQKLYYHVLGTDQSE------------------------------------------------DILCAEFPDEP 232 (710)
T ss_dssp CCCCCCCCEEEEEETTSCGGG------------------------------------------------CEEEECCTTCT
T ss_pred ccccCCCCEEEEEECCCCccc------------------------------------------------ceEEeccCCCC
Confidence 777776654210 00000011123
Q ss_pred CceEEEEEccCCCEEEEeeC-----CCeEEEEECCC------Cc-eeeecccccCceeceEEEEECCCCCEEEEeeCC--
Q 021399 147 GRINRAVWGPLNRTIISAGE-----DAIVRIWDTET------GK-LLKESDKETGHKKTITSLAKAADGSHFLTGSLD-- 212 (313)
Q Consensus 147 ~~i~~~~~~~~~~~i~t~~~-----d~~i~lwd~~~------~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-- 212 (313)
..+..+.|+|++++|+..+. +..|++||+.+ +. ....+. .+...+.. .++++|+.|+..+.+
T Consensus 233 ~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~---~~~~~~~~-~~s~dg~~l~~~s~~~~ 308 (710)
T 2xdw_A 233 KWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI---DNFEGEYD-YVTNEGTVFTFKTNRHS 308 (710)
T ss_dssp TCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE---CSSSSCEE-EEEEETTEEEEEECTTC
T ss_pred eEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee---CCCCcEEE-EEeccCCEEEEEECCCC
Confidence 34567889999998887764 67899999876 42 233332 23333443 477888887766653
Q ss_pred --CcEEEEECCCCc--EEEEEecC---CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccc
Q 021399 213 --KSAKLWDARTLE--LIKTYVTE---RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK 285 (313)
Q Consensus 213 --g~i~iwd~~~~~--~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (313)
+.|.+||++++. ....+..+ ..+..++|++ ++.++++...++. ..+..|+..+++.+..+.
T Consensus 309 ~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~lv~~~~~~g~-----------~~l~~~~~~~g~~~~~l~ 376 (710)
T 2xdw_A 309 PNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVR-SNFLVLCYLHDVK-----------NTLQLHDLATGALLKIFP 376 (710)
T ss_dssp TTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEET-TTEEEEEEEETTE-----------EEEEEEETTTCCEEEEEC
T ss_pred CCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEc-CCEEEEEEEECCE-----------EEEEEEECCCCCEEEecC
Confidence 369999998764 12333322 2577788875 4455555443332 223444443344334455
Q ss_pred ccccceeEEEECCCCCeeEEEEE
Q 021399 286 GHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 286 ~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
.+.+.|..++++||++.+.|...
T Consensus 377 ~~~~~v~~~~~s~d~~~l~~~~s 399 (710)
T 2xdw_A 377 LEVGSVVGYSGQKKDTEIFYQFT 399 (710)
T ss_dssp CCSSEEEEEECCTTCSEEEEEEE
T ss_pred CCCceEEEEecCCCCCEEEEEEe
Confidence 56778999999999998877643
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.68 E-value=1.2e-13 Score=117.29 Aligned_cols=239 Identities=10% Similarity=0.026 Sum_probs=159.0
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC----CcEEEEEC
Q 021399 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNV 81 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D----~~v~vWd~ 81 (313)
+.++...+.+++|+++|++++++..++.|.+||.++++.......+...+.+++++++++++++...+ +.|.+||.
T Consensus 40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~ 119 (333)
T 2dg1_A 40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 119 (333)
T ss_dssp EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence 44566678899999999988888889999999998887665554567789999999999988877666 68999999
Q ss_pred CCCeEEEEec---CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC
Q 021399 82 ETGAQLFTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN 158 (313)
Q Consensus 82 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 158 (313)
+++....... ....+..+.+.+++.+.+....... ......++.+. .. .+. ...+.........++|+|++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-~~~~~~l~~~~--~~--~~~-~~~~~~~~~~~~~i~~~~dg 193 (333)
T 2dg1_A 120 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS-TNPLGGVYYVS--PD--FRT-VTPIIQNISVANGIALSTDE 193 (333)
T ss_dssp TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT-TBCCEEEEEEC--TT--SCC-EEEEEEEESSEEEEEECTTS
T ss_pred CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc-cCCCceEEEEe--CC--CCE-EEEeecCCCcccceEECCCC
Confidence 8876543322 2234667778877766665432100 00011122211 11 111 11111122346788999999
Q ss_pred CEE-EEeeCCCeEEEEECCC-Cceeeec-----ccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec
Q 021399 159 RTI-ISAGEDAIVRIWDTET-GKLLKES-----DKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (313)
Q Consensus 159 ~~i-~t~~~d~~i~lwd~~~-~~~~~~~-----~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 231 (313)
+.+ ++...++.|.+||+.. +..+..+ ....++ ..+..++++++|+..++...++.|.+||. .++.+..+..
T Consensus 194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~ 271 (333)
T 2dg1_A 194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI 271 (333)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEc
Confidence 855 4555678999999863 3322211 011122 35778999999998888888899999998 4666666654
Q ss_pred CC-------ceeEEEeccCCCEEEEccc
Q 021399 232 ER-------PVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 232 ~~-------~~~~~~~~p~~~~~~~~~~ 252 (313)
.. .+..++|+|+++.++++..
T Consensus 272 ~~~~~g~~~~~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 272 PGRDEGHMLRSTHPQFIPGTNQLIICSN 299 (333)
T ss_dssp TTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred CCCccccccCcceEEECCCCCEEEEEeC
Confidence 32 4788999999888876644
No 175
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.66 E-value=6.4e-14 Score=119.06 Aligned_cols=275 Identities=11% Similarity=0.010 Sum_probs=169.7
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~ 89 (313)
...|.++.|++++..+++.+.++.++.| .++....+..+...+.+++|++++++++++..++.|.+||+.+++....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~ 81 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP 81 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE
T ss_pred ccccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE
Confidence 3457889999999988888889999999 4556677778878889999999999888888899999999988776544
Q ss_pred e-cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec--CCCCceEEEEEccCCCEEEEeeC
Q 021399 90 F-NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--GPQGRINRAVWGPLNRTIISAGE 166 (313)
Q Consensus 90 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~i~t~~~ 166 (313)
. .....+..+.+.+++.+.+....... ....+..+ +.. .......+. .+...++.+.++|+++.+++...
T Consensus 82 ~~~~~~~~~~i~~~~dg~l~v~~~~~~~---~~~~i~~~--d~~--~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~ 154 (333)
T 2dg1_A 82 FVSHKANPAAIKIHKDGRLFVCYLGDFK---STGGIFAA--TEN--GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR 154 (333)
T ss_dssp EECSSSSEEEEEECTTSCEEEEECTTSS---SCCEEEEE--CTT--SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECC
T ss_pred eeCCCCCcceEEECCCCcEEEEeCCCCC---CCceEEEE--eCC--CCEEEEEEccCccCCcccceEECCCCCEEEEecc
Confidence 3 33456778888887776665432200 00011111 111 111111111 23456888999999987776653
Q ss_pred ------CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEE-EEeeCCCcEEEEECCC-CcEEEEE--------e
Q 021399 167 ------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHF-LTGSLDKSAKLWDART-LELIKTY--------V 230 (313)
Q Consensus 167 ------d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l-~s~s~dg~i~iwd~~~-~~~~~~~--------~ 230 (313)
.+.|..+|...++... +. .+...+..++++|+|+.+ ++.+.++.|.+||+++ +..+..+ .
T Consensus 155 ~~~~~~~~~l~~~~~~~~~~~~-~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~ 230 (333)
T 2dg1_A 155 GYSTNPLGGVYYVSPDFRTVTP-II---QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT 230 (333)
T ss_dssp CBTTBCCEEEEEECTTSCCEEE-EE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC
T ss_pred ccccCCCceEEEEeCCCCEEEE-ee---cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC
Confidence 3567777766544322 21 123457889999999865 4555688999999964 3322211 1
Q ss_pred cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399 231 TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 231 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~ 307 (313)
....+..+++++++...++..+ ...+..+|.. +.. +..+.... ...+|...+.+++|+|||+.+.+..
T Consensus 231 ~~~~~~~i~~d~~G~l~v~~~~--~~~v~~~d~~-g~~-~~~~~~~~-----~~~g~~~~~~~~~~~~dg~~L~v~~ 298 (333)
T 2dg1_A 231 GHEGPDSCCIDSDDNLYVAMYG--QGRVLVFNKR-GYP-IGQILIPG-----RDEGHMLRSTHPQFIPGTNQLIICS 298 (333)
T ss_dssp SSSEEEEEEEBTTCCEEEEEET--TTEEEEECTT-SCE-EEEEECTT-----GGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred CCCCCCceEECCCCCEEEEEcC--CCEEEEECCC-CCE-EEEEEcCC-----CccccccCcceEEECCCCCEEEEEe
Confidence 1135677899998864443322 2234445542 221 11111100 0012334789999999987765443
No 176
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.65 E-value=2.6e-14 Score=123.36 Aligned_cols=192 Identities=8% Similarity=-0.004 Sum_probs=129.0
Q ss_pred eeEEEEccCCCE--EEEee-------------CCCCeEEEeCC-CCcEEEEec----CCCCceEEEEECCCCCeEEEee-
Q 021399 13 LTYLKYNKDGDL--LFSCA-------------KDHTPTVWFAD-NGERLGTYR----GHNGAVWCCDVSRDSMTLITGS- 71 (313)
Q Consensus 13 v~~~~fs~~g~~--l~s~s-------------~d~~i~iw~~~-~~~~~~~~~----~H~~~V~~~~~~~~~~~l~s~s- 71 (313)
+.+++|+|||++ +++++ .++.+++|+++ +++....+. .+...+.+++|+|||+++++++
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~ 164 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADL 164 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcC
Confidence 566899999994 55653 68999999997 466544443 2556789999999999887765
Q ss_pred CCCcEEEEECC-CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceE
Q 021399 72 ADQTAKLWNVE-TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRIN 150 (313)
Q Consensus 72 ~D~~v~vWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 150 (313)
.++.|++||+. +++...... .....+.....
T Consensus 165 ~~~~v~~~~~~~~g~~~~~~~------------------------------------------------~~~~~~g~~p~ 196 (365)
T 1jof_A 165 TANKLWTHRKLASGEVELVGS------------------------------------------------VDAPDPGDHPR 196 (365)
T ss_dssp TTTEEEEEEECTTSCEEEEEE------------------------------------------------EECSSTTCCEE
T ss_pred CCCEEEEEEECCCCCEEEeee------------------------------------------------EecCCCCCCCC
Confidence 46899999987 554321100 00001123456
Q ss_pred EEEEccCCCEEEEeeC-CCeEEEEECC--CCcee---eecccc----cCcee------ceEEEE-ECCCCCEEEEeeCCC
Q 021399 151 RAVWGPLNRTIISAGE-DAIVRIWDTE--TGKLL---KESDKE----TGHKK------TITSLA-KAADGSHFLTGSLDK 213 (313)
Q Consensus 151 ~~~~~~~~~~i~t~~~-d~~i~lwd~~--~~~~~---~~~~~~----~~h~~------~v~~~~-~s~~~~~l~s~s~dg 213 (313)
.++|+|+++++++++. ++.|.+|+.. +++.. ..+... .+|.. .+..++ |+|||++|++++.+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 7889999998877764 7899999764 45432 111111 12232 588999 999999988776532
Q ss_pred ------cEEEEECC-CCcEEEE---Ee-cCCceeEEEecc---CCCEEEEccc
Q 021399 214 ------SAKLWDAR-TLELIKT---YV-TERPVNAVTMSP---LLDHVVLGGG 252 (313)
Q Consensus 214 ------~i~iwd~~-~~~~~~~---~~-~~~~~~~~~~~p---~~~~~~~~~~ 252 (313)
.|.+|+++ +++.... .. .......++|+| +++.++++..
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~ 329 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD 329 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEc
Confidence 89999986 5665432 22 233467889999 7888877654
No 177
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.65 E-value=2.4e-13 Score=116.13 Aligned_cols=210 Identities=10% Similarity=0.002 Sum_probs=135.8
Q ss_pred cceeEEEEccCCCEEEEeeCCC---C--eEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC------------
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDH---T--PTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD------------ 73 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~---~--i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D------------ 73 (313)
..+..++|||||++|+..+.++ . |.+|++++++.......+ . +..++|+|||+.|+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence 3567899999999999887642 3 777788887765444433 3 9999999999988777642
Q ss_pred ---------------CcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceec-cc-cceeeeeeeCCCCCCC
Q 021399 74 ---------------QTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMEL-NS-AIHVKRIARDPADQGG 136 (313)
Q Consensus 74 ---------------~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~ 136 (313)
..|.+||+.+++.+..+... ....+.|++++ +++......... .. ...++.+. .+
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d------~~ 208 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE------DG 208 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE------TT
T ss_pred cceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe-EEEEEecccccccccccccEEEeC------CC
Confidence 57899999988762322223 66678888877 554432210000 00 11222221 12
Q ss_pred ceEEEecCCCCceEEEEEccCCCEEEEeeCC--------CeEEEEECCCCceeeecccccCceeceEE-EEECCCCCEEE
Q 021399 137 ESVLILKGPQGRINRAVWGPLNRTIISAGED--------AIVRIWDTETGKLLKESDKETGHKKTITS-LAKAADGSHFL 207 (313)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d--------~~i~lwd~~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~~l~ 207 (313)
.. ..+..+ ..+..+ +|+|+.++.++.+ ..|.+|| +++. ..+. ..+...+.. +.|+ |+ .++
T Consensus 209 ~~-~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~--~~~~~~~~~~~~~s-dg-~~~ 277 (347)
T 2gop_A 209 KE-EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGIL--DEVDRGVGQAKIKD-GK-VYF 277 (347)
T ss_dssp EE-EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESS--TTCCSEEEEEEEET-TE-EEE
T ss_pred ce-EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-Eecc--ccCCcccCCccEEc-Cc-EEE
Confidence 22 222222 334333 8999988877644 4688888 4443 2222 245567776 8999 88 899
Q ss_pred EeeCCCcEEEEECCCCcEEEEEecCCceeEEEecc
Q 021399 208 TGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242 (313)
Q Consensus 208 s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p 242 (313)
+++.++.+++| +.+++....+.....+..++|+|
T Consensus 278 ~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 278 TLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE 311 (347)
T ss_dssp EEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS
T ss_pred EEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC
Confidence 99999999999 87766644444556788899998
No 178
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.63 E-value=5.6e-14 Score=121.97 Aligned_cols=226 Identities=12% Similarity=-0.012 Sum_probs=143.3
Q ss_pred eEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEE-------------------EEECCCCCeEEEe----
Q 021399 14 TYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWC-------------------CDVSRDSMTLITG---- 70 (313)
Q Consensus 14 ~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~-------------------~~~~~~~~~l~s~---- 70 (313)
..+.|+|||++|+.++.++.|++||+.+++....+..+...... ++|+|+++.++.+
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 34789999999999999999999999988876666655543322 3567888766544
Q ss_pred -eCCCcEEEEECCCCeEEEEecCCCCeeEEEeec-CCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCC--
Q 021399 71 -SADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP-- 145 (313)
Q Consensus 71 -s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 145 (313)
..+..|.+||+.+++.............+.|+| ++. ++........... ..++.+... ++. ...+..+
T Consensus 164 ~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~--~~l~~~d~~----~~~-~~~l~~~~~ 236 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVD--ARMWLVNED----GSN-VRKIKEHAE 236 (396)
T ss_dssp TCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCS--CCCEEEETT----SCC-CEESSCCCT
T ss_pred CCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCC--ceEEEEECC----CCc-eeEeeccCC
Confidence 466789999999887765555555677788888 555 4443321110000 111111110 111 1122222
Q ss_pred CCceEEEEEccCCCEEEEeeCC-----CeEEEEECCCCceeeecccccCceeceEEEEECC-CCCEEEEee---------
Q 021399 146 QGRINRAVWGPLNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTGS--------- 210 (313)
Q Consensus 146 ~~~i~~~~~~~~~~~i~t~~~d-----~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s--------- 210 (313)
...+..+.|+|++++|+.++.+ +.|++||+.+++.... ....+ .. ++|+| ||+.+++++
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~ 310 (396)
T 3c5m_A 237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV-MVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVAD 310 (396)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE-EECCS----EE-EEEECSSSSEEEEEECCC------
T ss_pred CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe-eeCCC----CC-CCccCCCCceEEEecCCcceeecc
Confidence 2246778999999988777544 4599999987764322 11112 22 78999 999888765
Q ss_pred -------CCCcEEEEECCCCcEEEEEecCC-----------ceeEEEeccCCCEEEEccc
Q 021399 211 -------LDKSAKLWDARTLELIKTYVTER-----------PVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 211 -------~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~~~~~p~~~~~~~~~~ 252 (313)
.+..|.+||+++++...-..... ....++|+|++..++.++.
T Consensus 311 ~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~ 370 (396)
T 3c5m_A 311 ADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSD 370 (396)
T ss_dssp ----CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEEC
T ss_pred ccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEec
Confidence 24789999998876532222222 1456789999998877653
No 179
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.62 E-value=2.4e-14 Score=133.97 Aligned_cols=232 Identities=12% Similarity=-0.030 Sum_probs=143.8
Q ss_pred ccccceeEEEEccCCCEEE-----EeeCCCCeEEEeCCCCcEEEEecCCCCce--EEEEECCCCCeEEEeeCCCc-----
Q 021399 8 GHERPLTYLKYNKDGDLLF-----SCAKDHTPTVWFADNGERLGTYRGHNGAV--WCCDVSRDSMTLITGSADQT----- 75 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~-----s~s~d~~i~iw~~~~~~~~~~~~~H~~~V--~~~~~~~~~~~l~s~s~D~~----- 75 (313)
+|...+..++|||||++|+ +|+.+..|++||+++++.+. ..+-..+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~ 195 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV 195 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence 4666788999999999999 55566789999999988641 1122222 57899999999999888876
Q ss_pred --------EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399 76 --------AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (313)
Q Consensus 76 --------v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (313)
|++|++.+++.. + ..+.....+..
T Consensus 196 ~~~~~~~~v~~~~l~t~~~~-----------------~-------------------------------~lv~~~~~~~~ 227 (695)
T 2bkl_A 196 DERPGYTTIRYHTLGTEPSK-----------------D-------------------------------TVVHERTGDPT 227 (695)
T ss_dssp GGGGGGCEEEEEETTSCGGG-----------------C-------------------------------EEEECCCCCTT
T ss_pred ccCCCCCEEEEEECCCCchh-----------------c-------------------------------eEEEecCCCCE
Confidence 888888765310 0 00001112334
Q ss_pred ceEEEEEccCCCEEEEeeCCC----eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee---CCCcEEEEEC
Q 021399 148 RINRAVWGPLNRTIISAGEDA----IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS---LDKSAKLWDA 220 (313)
Q Consensus 148 ~i~~~~~~~~~~~i~t~~~d~----~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s---~dg~i~iwd~ 220 (313)
.+..+.|+|+|++++.++.++ .|.+||..++.. ..+. .+...+....+ ++|..+++.. .++.|.+||+
T Consensus 228 ~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~---~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~ 302 (695)
T 2bkl_A 228 TFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLV---KGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDP 302 (695)
T ss_dssp CEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEE---ECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBT
T ss_pred EEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEee---cCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeC
Confidence 567788999999888877665 777887655432 2222 13334445455 5666444443 2578999999
Q ss_pred CCCcE--EEEEe-c--CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccccc-ccceeEE
Q 021399 221 RTLEL--IKTYV-T--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINAL 294 (313)
Q Consensus 221 ~~~~~--~~~~~-~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~ 294 (313)
++++. ...+. . ...+..++++ ++.++++...++. ..+..++.. ++....+..+ .+.|..+
T Consensus 303 ~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~lv~~~~~dg~-----------~~l~~~~~~-g~~~~~l~~~~~~~v~~~ 368 (695)
T 2bkl_A 303 AKPARASWKEIVPEDSSASLLSVSIV--GGHLSLEYLKDAT-----------SEVRVATLK-GKPVRTVQLPGVGAASNL 368 (695)
T ss_dssp TBCSGGGCEEEECCCSSCEEEEEEEE--TTEEEEEEEETTE-----------EEEEEEETT-CCEEEECCCSSSSEECCC
T ss_pred CCCCccCCeEEecCCCCCeEEEEEEE--CCEEEEEEEECCE-----------EEEEEEeCC-CCeeEEecCCCCeEEEEe
Confidence 87653 22332 2 3346667776 4566665444332 122223321 2222223333 6778889
Q ss_pred EECCCCCeeEEEEE
Q 021399 295 AFNPDGKRYGFLLL 308 (313)
Q Consensus 295 ~fspdgk~~~~~~~ 308 (313)
+++||++.++|...
T Consensus 369 ~~s~d~~~l~~~~s 382 (695)
T 2bkl_A 369 MGLEDLDDAYYVFT 382 (695)
T ss_dssp BSCTTCSEEEEEEE
T ss_pred ecCCCCCEEEEEEc
Confidence 99999999887654
No 180
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.62 E-value=2.2e-13 Score=126.62 Aligned_cols=253 Identities=13% Similarity=0.038 Sum_probs=153.5
Q ss_pred cccccccccee---------EEEEc--cCCCE-EEEeeC-CCCeEEEeCC--CCcEEEEecC-----CCCceEEEEECCC
Q 021399 4 ILMKGHERPLT---------YLKYN--KDGDL-LFSCAK-DHTPTVWFAD--NGERLGTYRG-----HNGAVWCCDVSRD 63 (313)
Q Consensus 4 ~~l~~h~~~v~---------~~~fs--~~g~~-l~s~s~-d~~i~iw~~~--~~~~~~~~~~-----H~~~V~~~~~~~~ 63 (313)
+.|..|...+. ...|+ |||++ |+.++. +..|.+|+.. .......+.. |...+..++|+||
T Consensus 61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spD 140 (662)
T 3azo_A 61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPE 140 (662)
T ss_dssp EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETT
T ss_pred ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCC
Confidence 44555655555 55565 99998 776554 4555555554 2033455655 6778899999999
Q ss_pred CCeEEEeeCC----------CcEEEEECCC------CeEEEEe-cCCCCeeEEEeecCCeEEEEEC-CCceecc--ccce
Q 021399 64 SMTLITGSAD----------QTAKLWNVET------GAQLFTF-NFDSPARSVDFAVGDKLAVITT-DPFMELN--SAIH 123 (313)
Q Consensus 64 ~~~l~s~s~D----------~~v~vWd~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~ 123 (313)
|+.|+.++.| ..|++||+.+ ++..... ........+.|+|+++.++... +...... ..+.
T Consensus 141 g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~ 220 (662)
T 3azo_A 141 RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELK 220 (662)
T ss_dssp TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEE
T ss_pred CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEE
Confidence 9999988877 5899999988 5544333 2233345567888876555432 2211000 1122
Q ss_pred eeeeeeCCCCCCC---ceEEEecCCCCceEEEEEccCCCEEEEeeCCC--eEEEEECCCCceeeecccccCceec-----
Q 021399 124 VKRIARDPADQGG---ESVLILKGPQGRINRAVWGPLNRTIISAGEDA--IVRIWDTETGKLLKESDKETGHKKT----- 193 (313)
Q Consensus 124 ~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~--~i~lwd~~~~~~~~~~~~~~~h~~~----- 193 (313)
++++. ..+ .......++...+..+.|+|+++.+++++.++ .|.+||+.+++... +.. .+...
T Consensus 221 ~~d~~-----~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~-l~~--~~~~~~~p~w 292 (662)
T 3azo_A 221 TARVT-----EDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQ-LCR--REEEFAGPLW 292 (662)
T ss_dssp EEEEC-----TTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEE-SSC--CSSBSSCCCC
T ss_pred EEEEC-----CCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceee-ccc--ccccccCccc
Confidence 22221 012 23333344567889999999999888888888 67777776665432 221 12111
Q ss_pred ---eEEEEECCCCCEEEEeeCCCcEEEE--ECCCCcEEEEEec-CCceeEEEeccCCCEEEEcccccC--ceeEeeccCC
Q 021399 194 ---ITSLAKAADGSHFLTGSLDKSAKLW--DARTLELIKTYVT-ERPVNAVTMSPLLDHVVLGGGQDA--SAVTTTDHRA 265 (313)
Q Consensus 194 ---v~~~~~s~~~~~l~s~s~dg~i~iw--d~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~--~~~~~~~~~~ 265 (313)
+..+++++++..+++++. +.++|| |+.+++ +..+.. ...+..+ ++++++.+++..+... ..++..|...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~ 369 (662)
T 3azo_A 293 TPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVT 369 (662)
T ss_dssp STTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTT
T ss_pred cccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 567889999999999998 999999 666555 455543 2334444 2566676665544332 2355556544
Q ss_pred Cc
Q 021399 266 GK 267 (313)
Q Consensus 266 ~~ 267 (313)
+.
T Consensus 370 g~ 371 (662)
T 3azo_A 370 GR 371 (662)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.60 E-value=1.2e-11 Score=112.30 Aligned_cols=280 Identities=13% Similarity=0.081 Sum_probs=167.5
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCC--CCcEEEEecCCCCceEEEEEC----CCCCeEEEee-CCCcEEEEECCCC
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFAD--NGERLGTYRGHNGAVWCCDVS----RDSMTLITGS-ADQTAKLWNVETG 84 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~--~~~~~~~~~~H~~~V~~~~~~----~~~~~l~s~s-~D~~v~vWd~~~~ 84 (313)
.+..+.|||||+++++++.|+.|.+||+. +.+.+.++.... .-..++|+ |||++++++. .++++.++|..+.
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~ 276 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETL 276 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTC
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCC
Confidence 46789999999999999999999999996 888888887643 35688999 6998777665 5699999999998
Q ss_pred eEEEEecCCC------------CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEE
Q 021399 85 AQLFTFNFDS------------PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRA 152 (313)
Q Consensus 85 ~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (313)
+.+..+.... ....+..+++....++... ....++-+.. .......+..+. ........
T Consensus 277 ~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~------~~g~v~~vd~--~~~~~~~v~~i~-~~~~~~d~ 347 (567)
T 1qks_A 277 EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK------ETGKILLVDY--TDLNNLKTTEIS-AERFLHDG 347 (567)
T ss_dssp CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEET------TTTEEEEEET--TCSSEEEEEEEE-CCSSEEEE
T ss_pred cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEec------CCCeEEEEec--CCCccceeeeee-ccccccCc
Confidence 8876654321 1223333333222221111 0011111110 000001111111 12245677
Q ss_pred EEccCCCEEEEee-CCCeEEEEECCCCceeeeccc--ccCceeceEEEEECCCCCEE-EEee-CCCcEEEEECCC-----
Q 021399 153 VWGPLNRTIISAG-EDAIVRIWDTETGKLLKESDK--ETGHKKTITSLAKAADGSHF-LTGS-LDKSAKLWDART----- 222 (313)
Q Consensus 153 ~~~~~~~~i~t~~-~d~~i~lwd~~~~~~~~~~~~--~~~h~~~v~~~~~s~~~~~l-~s~s-~dg~i~iwd~~~----- 222 (313)
.|+|++++++++. .++.|.++|+.+++....+.. ...|.+.-..+ ++|++..+ +++. .+++|.++|.++
T Consensus 348 ~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~ 426 (567)
T 1qks_A 348 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPD 426 (567)
T ss_dssp EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred eECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCcc
Confidence 8999999887654 678999999999887665432 12343222222 57874444 4443 468999999988
Q ss_pred --CcEEEEEecCC-ceeEEEeccCCCEEEEcc--ccc---CceeEeeccCCC-----ceeeeeeehhhhhhhcccccccc
Q 021399 223 --LELIKTYVTER-PVNAVTMSPLLDHVVLGG--GQD---ASAVTTTDHRAG-----KFEAKFFDKILQEEIGGVKGHFG 289 (313)
Q Consensus 223 --~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~--~~~---~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~h~~ 289 (313)
.+.++++.... .-..+..+|++.++++.. ..+ ...+.++|.... ............. .+..-..
T Consensus 427 ~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~ 503 (567)
T 1qks_A 427 NAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA---GITEGQP 503 (567)
T ss_dssp TBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH---TCCSSCC
T ss_pred ccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccc---ccCCCCc
Confidence 67788876543 235578899999998864 222 234555554322 1000111110000 1111135
Q ss_pred ceeEEEECCCCCeeEE
Q 021399 290 PINALAFNPDGKRYGF 305 (313)
Q Consensus 290 ~V~~~~fspdgk~~~~ 305 (313)
.+..++|+|||+++=+
T Consensus 504 ~~~~~~~~~~G~~~~~ 519 (567)
T 1qks_A 504 RVVQGEFNKDGTEVWF 519 (567)
T ss_dssp EEEEEEECTTSSEEEE
T ss_pred ceEeeeECCCCCEEEE
Confidence 7899999999998533
No 182
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=4.3e-12 Score=107.77 Aligned_cols=223 Identities=14% Similarity=0.003 Sum_probs=146.5
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~ 91 (313)
.+..+.++ +++.+++...++.|.+||.++++.+.++.. ......++++++++++++...++.|.+||+.+++....+.
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~ 122 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIE 122 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEE
Confidence 35667774 455666666689999999999999888854 4567889998888666665589999999999887654332
Q ss_pred CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee-CCCeE
Q 021399 92 FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-EDAIV 170 (313)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~-~d~~i 170 (313)
..... +.......+++ ..++.+++.. .++.|
T Consensus 123 ~g~~~-----------------------------------------------~~~~~p~~i~~-~~~~lyv~~~~~~~~v 154 (328)
T 3dsm_A 123 CPDMD-----------------------------------------------MESGSTEQMVQ-YGKYVYVNCWSYQNRI 154 (328)
T ss_dssp CTTCC-----------------------------------------------TTTCBCCCEEE-ETTEEEEEECTTCCEE
T ss_pred cCCcc-----------------------------------------------ccCCCcceEEE-ECCEEEEEcCCCCCEE
Confidence 11000 00001112223 2233344433 48899
Q ss_pred EEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC----------CcEEEEECCCCcEEEEEec--CCceeEE
Q 021399 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD----------KSAKLWDARTLELIKTYVT--ERPVNAV 238 (313)
Q Consensus 171 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d----------g~i~iwd~~~~~~~~~~~~--~~~~~~~ 238 (313)
.+||+.+++...++.. ......++++++|+.++++..+ +.|.++|.++++....+.. ....+.+
T Consensus 155 ~viD~~t~~~~~~i~~----g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 155 LKIDTETDKVVDELTI----GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp EEEETTTTEEEEEEEC----SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred EEEECCCCeEEEEEEc----CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 9999999887665532 2245678899999987777655 7899999999988777654 2367899
Q ss_pred EeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302 (313)
Q Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~ 302 (313)
+++|+++.++++.+ .++.+|...++..... .+..+......++++|+++.
T Consensus 231 a~~~d~~~lyv~~~----~v~~~d~~t~~~~~~~----------~~~~~~~~p~gi~vdp~~g~ 280 (328)
T 3dsm_A 231 QLNGTRDTLYWINN----DIWRMPVEADRVPVRP----------FLEFRDTKYYGLTVNPNNGE 280 (328)
T ss_dssp EECTTSCEEEEESS----SEEEEETTCSSCCSSC----------SBCCCSSCEEEEEECTTTCC
T ss_pred EEecCCCEEEEEcc----EEEEEECCCCceeeee----------eecCCCCceEEEEEcCCCCe
Confidence 99999998888643 3445554443321100 01112356788999995443
No 183
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.56 E-value=1.8e-12 Score=106.56 Aligned_cols=222 Identities=8% Similarity=-0.069 Sum_probs=140.3
Q ss_pred ceeEEEEccCCCEEE-EeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 12 PLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~-s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
.+.+++++++|+.++ +.+.++.|.+|+..+.........+...+.+++++++++++++.. ++.|.+||..+..... .
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-L 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-C
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-e
Confidence 678999999999777 557789999998765543322223345678899999998777665 8899999976542210 0
Q ss_pred cCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeE
Q 021399 91 NFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIV 170 (313)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i 170 (313)
. .........+++.++++.+++...++.|
T Consensus 103 ~---------------------------------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i 131 (270)
T 1rwi_B 103 P---------------------------------------------------FDGLNYPEGLAVDTQGAVYVADRGNNRV 131 (270)
T ss_dssp C---------------------------------------------------CCSCSSEEEEEECTTCCEEEEEGGGTEE
T ss_pred e---------------------------------------------------cCCcCCCcceEECCCCCEEEEECCCCEE
Confidence 0 0011235567788888877777778899
Q ss_pred EEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC-CceeEEEeccCCCEEEE
Q 021399 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAVTMSPLLDHVVL 249 (313)
Q Consensus 171 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~ 249 (313)
.+|+..+....... ......+..++++++|+.+++...++.|.+||.++.......... .....++++|++ .+++
T Consensus 132 ~~~~~~~~~~~~~~---~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g-~l~v 207 (270)
T 1rwi_B 132 VKLAAGSKTQTVLP---FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAG-TVYV 207 (270)
T ss_dssp EEECTTCCSCEECC---CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTC-CEEE
T ss_pred EEEECCCceeEeec---cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCC-CEEE
Confidence 99986554332211 122345788999999998887777889999999876654332222 457889999988 4555
Q ss_pred cccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399 250 GGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY 303 (313)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~ 303 (313)
+...+ ..+..++...... ......+...+.+++++|||+.+
T Consensus 208 ~~~~~-~~v~~~~~~~~~~------------~~~~~~~~~~p~~i~~~~~g~l~ 248 (270)
T 1rwi_B 208 TEHNT-NQVVKLLAGSTTS------------TVLPFTGLNTPLAVAVDSDRTVY 248 (270)
T ss_dssp EETTT-SCEEEECTTCSCC------------EECCCCSCSCEEEEEECTTCCEE
T ss_pred EECCC-CcEEEEcCCCCcc------------eeeccCCCCCceeEEECCCCCEE
Confidence 43222 2233344322111 01111233578999999999743
No 184
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.55 E-value=1.8e-12 Score=110.10 Aligned_cols=200 Identities=11% Similarity=0.112 Sum_probs=138.8
Q ss_pred ccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc-EEEEe---------cCCCCceEEEEECC-CCCeEEEee-CCCc
Q 021399 8 GHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE-RLGTY---------RGHNGAVWCCDVSR-DSMTLITGS-ADQT 75 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~-~~~~~---------~~H~~~V~~~~~~~-~~~~l~s~s-~D~~ 75 (313)
++...+..++++|+|+++++...++.|++|+.+... .+.++ .++-.....++++| +++++++.+ .++.
T Consensus 88 ~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~ 167 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSR 167 (329)
T ss_dssp TTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCE
T ss_pred CccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCe
Confidence 344567899999999999998889999999976442 45555 34555789999999 788888876 6999
Q ss_pred EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399 76 AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (313)
Q Consensus 76 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (313)
|++||. +++.+..+..... . . . . ..++......++++
T Consensus 168 I~~~~~-~g~~~~~~~~~g~------------------------~---------~-~-~-------~~~~~~~p~gia~d 204 (329)
T 3fvz_A 168 IVQFSP-SGKFVTQWGEESS------------------------G---------S-S-P-------RPGQFSVPHSLALV 204 (329)
T ss_dssp EEEECT-TSCEEEEECEECC------------------------S---------S-S-C-------CTTEESCEEEEEEE
T ss_pred EEEEcC-CCCEEEEeccCCC------------------------C---------C-C-C-------CCcccCCCcEEEEE
Confidence 999994 4444332210000 0 0 0 0 00111235678889
Q ss_pred cC-CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC------CCCEEEEeeCCCcEEEEECCCCcEEEE
Q 021399 156 PL-NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA------DGSHFLTGSLDKSAKLWDARTLELIKT 228 (313)
Q Consensus 156 ~~-~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~------~~~~l~s~s~dg~i~iwd~~~~~~~~~ 228 (313)
|+ +..+++...++.|++||..+++.+..+.. ..+...+.+++++| +|+..++...+.+|++||..+++.+..
T Consensus 205 ~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~ 283 (329)
T 3fvz_A 205 PHLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV 283 (329)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE
T ss_pred CCCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE
Confidence 88 77777778899999999988887766532 24556788999998 333333334456899999999999888
Q ss_pred Ee----cCCceeEEEeccCCCEEEEccc
Q 021399 229 YV----TERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 229 ~~----~~~~~~~~~~~p~~~~~~~~~~ 252 (313)
+. .......++++|++ .++++..
T Consensus 284 ~~~~~~~~~~p~~ia~~~dG-~lyvad~ 310 (329)
T 3fvz_A 284 FKPVRKHFDMPHDIVASEDG-TVYIGDA 310 (329)
T ss_dssp ECCSSSCCSSEEEEEECTTS-EEEEEES
T ss_pred EcCCCCccCCeeEEEECCCC-CEEEEEC
Confidence 73 22347889999998 6666543
No 185
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.54 E-value=2.1e-10 Score=95.36 Aligned_cols=266 Identities=11% Similarity=0.101 Sum_probs=167.4
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE-EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
.+..+...+.+++++++|..+++...++.|.+||.. ++... .+..+...+.+++++++++++++...++.|..||...
T Consensus 9 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g 87 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKG 87 (299)
T ss_dssp ECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTS
T ss_pred cCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCC
Confidence 345566789999999999988877778899999988 54432 2234557789999999999888877788999999863
Q ss_pred CeEEEEec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCce-EEEecCCCCceEEEEEccCCCEE
Q 021399 84 GAQLFTFN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGES-VLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
........ ....+..+.+.+++.+.+..... . .+..+ +. .+.. ..........+..+++.++++.+
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~--~i~~~--d~---~g~~~~~~~~~~~~~~~~i~~~~~g~l~ 155 (299)
T 2z2n_A 88 IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNG-----N--RIGRI--TD---DGKIREYELPNKGSYPSFITLGSDNALW 155 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTSCEEEEETTT-----T--EEEEE--CT---TCCEEEEECSSTTCCEEEEEECTTSCEE
T ss_pred cEEEEeCCCcCCCceeeEECCCCCEEEEecCC-----c--eEEEE--CC---CCCEEEecCCCCCCCCceEEEcCCCCEE
Confidence 22222221 22345666677666665544321 0 01000 11 1111 11122234567888999999887
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec---CCceeEE
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---ERPVNAV 238 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~ 238 (313)
++...++.|..||. +++... +.. ......+..++++++|...++...++.|..||. +++.. .+.. ...+..+
T Consensus 156 v~~~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i 230 (299)
T 2z2n_A 156 FTENQNNAIGRITE-SGDITE-FKI-PTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EFKIPTPNARPHAI 230 (299)
T ss_dssp EEETTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEE
T ss_pred EEeCCCCEEEEEcC-CCcEEE-eeC-CCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EEECCCCCCCceeE
Confidence 77777789999998 555432 211 123456789999999998777777889999999 66643 3322 2457889
Q ss_pred EeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399 239 TMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY 303 (313)
Q Consensus 239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~ 303 (313)
++.+++. ++++... ...+..+|. .+.+ ..+. +..+...+.++++ ++|+.+
T Consensus 231 ~~~~~g~-l~v~~~~-~~~i~~~d~-~g~~--~~~~---------~~~~~~~~~~i~~-~~g~l~ 280 (299)
T 2z2n_A 231 TAGAGID-LWFTEWG-ANKIGRLTS-NNII--EEYP---------IQIKSAEPHGICF-DGETIW 280 (299)
T ss_dssp EECSTTC-EEEEETT-TTEEEEEET-TTEE--EEEE---------CSSSSCCEEEEEE-CSSCEE
T ss_pred EECCCCC-EEEeccC-CceEEEECC-CCce--EEEe---------CCCCCCccceEEe-cCCCEE
Confidence 9999876 4444322 223444444 2221 1111 1233467889999 888764
No 186
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.54 E-value=1.2e-11 Score=102.62 Aligned_cols=187 Identities=12% Similarity=0.158 Sum_probs=133.1
Q ss_pred ccccceeEEEE-ccCCCEEEEeeC-CCCeEEEeCCCCcEEEEecC-CCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 8 GHERPLTYLKY-NKDGDLLFSCAK-DHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 8 ~h~~~v~~~~f-s~~g~~l~s~s~-d~~i~iw~~~~~~~~~~~~~-H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
+|...+..+++ ++++..+++... ++.|++|| .+++.+..+.. +...+.+++++++|+++++...++.|.+||...
T Consensus 74 ~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g- 151 (286)
T 1q7f_A 74 SQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG- 151 (286)
T ss_dssp TCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-
T ss_pred ccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-
Confidence 35567889999 577877776643 88999999 66777776643 446789999999999888878889999999653
Q ss_pred eEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
+.+..+.. ..+...+..++++|+++.+++.
T Consensus 152 ~~~~~~~~--------------------------------------------------~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 152 NVLHKFGC--------------------------------------------------SKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp CEEEEEEC--------------------------------------------------TTTCSSEEEEEECSSSEEEEEE
T ss_pred CEEEEeCC--------------------------------------------------CCccCCcEEEEECCCCCEEEEE
Confidence 22211100 0112345678888988877877
Q ss_pred eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC-cEEEEECCCCcEEEEEecCC---ceeEEEe
Q 021399 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-SAKLWDARTLELIKTYVTER---PVNAVTM 240 (313)
Q Consensus 165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~---~~~~~~~ 240 (313)
..++.|++||.. ++.+..+.. .++...+..++++++|..+++...++ .|.+||. +++.+..+.... .+..+++
T Consensus 182 ~~~~~i~~~~~~-g~~~~~~~~-~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 182 NRAHCVKVFNYE-GQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp GGGTEEEEEETT-CCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred CCCCEEEEEcCC-CCEEEEEcc-CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEE
Confidence 788999999974 444444422 23335788999999999888888886 9999996 466666664322 3668999
Q ss_pred ccCCCEEEEc
Q 021399 241 SPLLDHVVLG 250 (313)
Q Consensus 241 ~p~~~~~~~~ 250 (313)
+|++. ++++
T Consensus 259 ~~~g~-l~vs 267 (286)
T 1q7f_A 259 MDDGS-VVLA 267 (286)
T ss_dssp ETTTE-EEEE
T ss_pred CCCCc-EEEE
Confidence 99875 5554
No 187
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.54 E-value=2.2e-12 Score=111.10 Aligned_cols=217 Identities=12% Similarity=0.071 Sum_probs=135.1
Q ss_pred cceeEEEEccCCCEEEEeeC--CCCeEEEeCCCCcEEEE-ecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECCC-Ce
Q 021399 11 RPLTYLKYNKDGDLLFSCAK--DHTPTVWFADNGERLGT-YRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVET-GA 85 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~--d~~i~iw~~~~~~~~~~-~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~-~~ 85 (313)
..+..++|+|||++|+++.. ++.|.+||+++++.+.+ +.. .+ -+.+.+.|++ ..+++.+.||.+.+|+... ++
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~ 185 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-AG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK 185 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-TT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-CC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence 44678999999999998874 58899999999998887 553 22 2335567765 6788899999999999865 44
Q ss_pred EEEEe------cCCCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC------C----CCc
Q 021399 86 QLFTF------NFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG------P----QGR 148 (313)
Q Consensus 86 ~~~~~------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~ 148 (313)
..... ........+.+.++ ..+.+...+. .....++..+ .......+.- + ...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------~v~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~p~g 255 (361)
T 2oiz_A 186 VASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYG------NVYSADFSGD----EVKVDGPWSLLNDEDKAKNWVPGG 255 (361)
T ss_dssp EEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTS------EEEEEECSSS----SCEEEEEEESCCHHHHHTTCEECC
T ss_pred EeeeccccceEcCCCCceEEEecccCCEEEEEeCCC------eEEEEEecCC----CceecccccccCccccccccccCC
Confidence 43111 11110000111111 1222211111 0111110000 0000000000 0 001
Q ss_pred eEEEEEccCCCEEEEeeC-----------CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEE
Q 021399 149 INRAVWGPLNRTIISAGE-----------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKL 217 (313)
Q Consensus 149 i~~~~~~~~~~~i~t~~~-----------d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~i 217 (313)
...+.++|+++++.++.. .+.|.+||+.+++.+.++.. +. +.+++++|||++|++++. +.|.+
T Consensus 256 ~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~---~~--p~~ia~spdg~~l~v~n~-~~v~v 329 (361)
T 2oiz_A 256 YNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG---RD--ALSMTIDQQRNLMLTLDG-GNVNV 329 (361)
T ss_dssp SSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC---TT--CCEEEEETTTTEEEEECS-SCEEE
T ss_pred eeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec---CC--eeEEEECCCCCEEEEeCC-CeEEE
Confidence 112578898777666543 35899999999988877642 33 899999999999998887 99999
Q ss_pred EECCCC--cEEEEE-ecCCceeEEEeccCCC
Q 021399 218 WDARTL--ELIKTY-VTERPVNAVTMSPLLD 245 (313)
Q Consensus 218 wd~~~~--~~~~~~-~~~~~~~~~~~~p~~~ 245 (313)
||++++ +.+.++ ........++++|+|.
T Consensus 330 ~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 330 YDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred EECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 999999 998886 4455678899999874
No 188
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.52 E-value=1.4e-11 Score=111.78 Aligned_cols=221 Identities=13% Similarity=0.069 Sum_probs=145.4
Q ss_pred EccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC--CCeEEEEecCCCC
Q 021399 18 YNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE--TGAQLFTFNFDSP 95 (313)
Q Consensus 18 fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~--~~~~~~~~~~~~~ 95 (313)
.+|.+..+++...++.|.++|.++++.+.++... ..+..+.|+|||+++++++.|+.|.+||+. +.+.+..+.....
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~ 241 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE 241 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC
Confidence 3455667788888999999999999999888753 356789999999999999999999999995 7777766666666
Q ss_pred eeEEEee----cCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecC----------C-CCceEEEEEccCCC-
Q 021399 96 ARSVDFA----VGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKG----------P-QGRINRAVWGPLNR- 159 (313)
Q Consensus 96 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~~i~~~~~~~~~~- 159 (313)
...+.++ |+++.+++.... ...+.+.+. ...+.+..+.. | ..++..+..++.+.
T Consensus 242 P~~ia~s~~~~pDGk~l~v~n~~----~~~v~ViD~------~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~ 311 (567)
T 1qks_A 242 ARSIETSKMEGWEDKYAIAGAYW----PPQYVIMDG------ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE 311 (567)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEE----TTEEEEEET------TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSE
T ss_pred CceeEEccccCCCCCEEEEEEcc----CCeEEEEEC------CCCcEEEEEeccccccccccccCCCceEEEEEcCCCCE
Confidence 7788888 466655554310 011111110 01112221110 1 22566677777654
Q ss_pred EEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCcEEEEEec-C---Cc
Q 021399 160 TIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVT-E---RP 234 (313)
Q Consensus 160 ~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~-~---~~ 234 (313)
.++...++|.|.++|..+.+.+..... ........+.|+|+|++++++. .+++|.++|+++++.+..+.. . .+
T Consensus 312 ~vv~~~~~g~v~~vd~~~~~~~~v~~i--~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Php 389 (567)
T 1qks_A 312 FIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHP 389 (567)
T ss_dssp EEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCC
T ss_pred EEEEecCCCeEEEEecCCCccceeeee--eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCC
Confidence 455567789999999876543222111 1223466889999999987665 578999999999988777654 2 22
Q ss_pred eeEEE-eccCCCEEEEcc
Q 021399 235 VNAVT-MSPLLDHVVLGG 251 (313)
Q Consensus 235 ~~~~~-~~p~~~~~~~~~ 251 (313)
...+. ++|++..+++++
T Consensus 390 g~g~~~~~p~~g~v~~t~ 407 (567)
T 1qks_A 390 GRGANFVHPTFGPVWATS 407 (567)
T ss_dssp TTCEEEEETTTEEEEEEE
T ss_pred ccceeeECCCCCcEEEeC
Confidence 22333 478766665543
No 189
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.50 E-value=1.4e-12 Score=112.14 Aligned_cols=171 Identities=12% Similarity=0.018 Sum_probs=123.8
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCc----------EEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGE----------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~----------~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
+++.+++++...++++|+.|+. ++|++++.+ .......+.+ |..++| |++.|+.+ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~l-~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSKA-VVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTEE-EEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCEE-EEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEc
Confidence 6889999999999999999855 569865433 1112234667 999999 88888888 8899999998
Q ss_pred CCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 82 ETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
.+....... ..+...+.++.+.+ ..+
T Consensus 114 ~sl~~~~~~----------------------------------------------------~~~~~~v~~i~~~~--p~~ 139 (388)
T 1xip_A 114 EELSEFRTV----------------------------------------------------TSFEKPVFQLKNVN--NTL 139 (388)
T ss_dssp SSTTCEEEE----------------------------------------------------EECSSCEEEEEECS--SEE
T ss_pred hhhhccCcc----------------------------------------------------ceeecceeeEEecC--CCE
Confidence 764321110 00111223333322 238
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE--EEEE------e---
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL--IKTY------V--- 230 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~------~--- 230 (313)
++++.||.|.+||++.+.... +...|+|++|+|+| ++.|..||++++|+.+.+++ ..++ .
T Consensus 140 av~~~dG~L~v~dl~~~~~~~-------~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~ 210 (388)
T 1xip_A 140 VILNSVNDLSALDLRTKSTKQ-------LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELP 210 (388)
T ss_dssp EEEETTSEEEEEETTTCCEEE-------EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSC
T ss_pred EEEECCCCEEEEEccCCcccc-------ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCccccccc
Confidence 889999999999998776532 45689999999999 78899999999999988775 5566 1
Q ss_pred -cCCceeEEEeccCCCEEEEc
Q 021399 231 -TERPVNAVTMSPLLDHVVLG 250 (313)
Q Consensus 231 -~~~~~~~~~~~p~~~~~~~~ 250 (313)
++..+.++.|.+.+..+++-
T Consensus 211 ~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 211 VEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp TTTSEEEEEEESSSSEEEEEE
T ss_pred CCCeeEEEEEEecCCeEEEEE
Confidence 34568899999987776653
No 190
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.50 E-value=1.8e-11 Score=101.32 Aligned_cols=185 Identities=13% Similarity=0.094 Sum_probs=134.3
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCC-CceEEEEECCCCCeEEEeeC-CCcEEEEECCCCeEEE
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLITGSA-DQTAKLWNVETGAQLF 88 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l~s~s~-D~~v~vWd~~~~~~~~ 88 (313)
..+.++.++|+|+.|+ +.++.|+.||. +++.+.+++.+. ..+.++.+.++|+.+++.+. ++.+..+|. +++.+.
T Consensus 37 ~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~ 112 (276)
T 3no2_A 37 WECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLS 112 (276)
T ss_dssp CCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEE
T ss_pred CCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEE
Confidence 3578899999999999 45778999998 899999998764 57889999999999998877 777777775 455544
Q ss_pred EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCC
Q 021399 89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168 (313)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~ 168 (313)
.+...... ..+......+...++++++++...++
T Consensus 113 ~~~~~~~~----------------------------------------------~~~~~~~~~v~~~~~G~~lv~~~~~~ 146 (276)
T 3no2_A 113 KTEFETGI----------------------------------------------ERPHAQFRQINKNKKGNYLVPLFATS 146 (276)
T ss_dssp EEEECCSC----------------------------------------------SSGGGSCSCCEECTTSCEEEEETTTT
T ss_pred EEeccCCC----------------------------------------------CcccccccCceECCCCCEEEEecCCC
Confidence 33210000 00011122334577888999999999
Q ss_pred eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC-------ceeEEEec
Q 021399 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER-------PVNAVTMS 241 (313)
Q Consensus 169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~ 241 (313)
.|.+||.+ ++.+-++.. .....++...++|+.+++++.++.|..+|.++++.+.++.... .+..++..
T Consensus 147 ~v~~~d~~-G~~~w~~~~----~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~ 221 (276)
T 3no2_A 147 EVREIAPN-GQLLNSVKL----SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPL 221 (276)
T ss_dssp EEEEECTT-SCEEEEEEC----SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEEC
T ss_pred EEEEECCC-CCEEEEEEC----CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEc
Confidence 99999998 887665542 1345567788999999999988899999999999998885321 14566677
Q ss_pred cCCCEEEEc
Q 021399 242 PLLDHVVLG 250 (313)
Q Consensus 242 p~~~~~~~~ 250 (313)
+++..++..
T Consensus 222 ~~G~i~v~~ 230 (276)
T 3no2_A 222 QNGGLYICN 230 (276)
T ss_dssp TTSCEEEEE
T ss_pred CCCCEEEEe
Confidence 777655543
No 191
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.49 E-value=2e-11 Score=102.54 Aligned_cols=228 Identities=11% Similarity=0.085 Sum_probs=139.5
Q ss_pred cccccceeEEEEccCCCEEEE-------eeCCCCeEEEeCCCCcEEEEec----CCCCceEEEEECCC-CCeEEEeeCCC
Q 021399 7 KGHERPLTYLKYNKDGDLLFS-------CAKDHTPTVWFADNGERLGTYR----GHNGAVWCCDVSRD-SMTLITGSADQ 74 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s-------~s~d~~i~iw~~~~~~~~~~~~----~H~~~V~~~~~~~~-~~~l~s~s~D~ 74 (313)
......+.+++|+++|..+++ +..++.|.+||..+++...... ++...+.+++++++ ++++++.. .+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~ 92 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL 92 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence 444556789999999998888 6778999999988877543222 25567899999999 76555544 44
Q ss_pred cEEEEECCCCeEEEE-ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEE
Q 021399 75 TAKLWNVETGAQLFT-FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAV 153 (313)
Q Consensus 75 ~v~vWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 153 (313)
.|.+||.. ++.... ..... ..+...+..+.
T Consensus 93 ~l~~~d~~-g~~~~~~~~~~~------------------------------------------------~~~~~~~~~i~ 123 (314)
T 1pjx_A 93 GLLVVQTD-GTFEEIAKKDSE------------------------------------------------GRRMQGCNDCA 123 (314)
T ss_dssp EEEEEETT-SCEEECCSBCTT------------------------------------------------SCBCBCCCEEE
T ss_pred CEEEEeCC-CCEEEEEeccCC------------------------------------------------CccccCCcCEE
Confidence 78889987 543211 10000 00112355677
Q ss_pred EccCCCEEEEeeCC---------------CeEEEEECCCCceeeecccccCceeceEEEEEC----CCCCEEEEe-eCCC
Q 021399 154 WGPLNRTIISAGED---------------AIVRIWDTETGKLLKESDKETGHKKTITSLAKA----ADGSHFLTG-SLDK 213 (313)
Q Consensus 154 ~~~~~~~i~t~~~d---------------~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s----~~~~~l~s~-s~dg 213 (313)
+.++++.+++...+ +.|..||.. ++..... .+......++++ ++++.+..+ ..++
T Consensus 124 ~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~----~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~ 198 (314)
T 1pjx_A 124 FDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD----TAFQFPNGIAVRHMNDGRPYQLIVAETPTK 198 (314)
T ss_dssp ECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE----EEESSEEEEEEEECTTSCEEEEEEEETTTT
T ss_pred ECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec----cCCCCcceEEEecccCCCCCEEEEEECCCC
Confidence 77878776666544 567778765 4432211 123346788899 999765544 5678
Q ss_pred cEEEEECC-CCcE-----EEEEecC--CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhcccc
Q 021399 214 SAKLWDAR-TLEL-----IKTYVTE--RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVK 285 (313)
Q Consensus 214 ~i~iwd~~-~~~~-----~~~~~~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (313)
.|.+||++ +++. ...+... .....+++++++...++..+ ...+..+|. .+++.+..+.
T Consensus 199 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~--~~~i~~~d~------------~~g~~~~~~~ 264 (314)
T 1pjx_A 199 KLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG--SSHIEVFGP------------DGGQPKMRIR 264 (314)
T ss_dssp EEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET--TTEEEEECT------------TCBSCSEEEE
T ss_pred eEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC--CCEEEEEcC------------CCCcEeEEEe
Confidence 99999986 4432 1222111 44677889988764443222 122333343 3222222333
Q ss_pred ccccceeEEEECCCCCee
Q 021399 286 GHFGPINALAFNPDGKRY 303 (313)
Q Consensus 286 ~h~~~V~~~~fspdgk~~ 303 (313)
.+...+.+++|+|||+.+
T Consensus 265 ~~~~~~~~i~~~~dg~~l 282 (314)
T 1pjx_A 265 CPFEKPSNLHFKPQTKTI 282 (314)
T ss_dssp CSSSCEEEEEECTTSSEE
T ss_pred CCCCCceeEEECCCCCEE
Confidence 445788999999999854
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.49 E-value=3.8e-12 Score=119.87 Aligned_cols=232 Identities=16% Similarity=0.068 Sum_probs=137.0
Q ss_pred cccceeEEEEccCCCEEEEeeCC-----CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCc--------
Q 021399 9 HERPLTYLKYNKDGDLLFSCAKD-----HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQT-------- 75 (313)
Q Consensus 9 h~~~v~~~~fs~~g~~l~s~s~d-----~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~-------- 75 (313)
|...+..++|||||++|+.++.+ ..|++||+++++.+.. ..+...+..++|+|| +.|+.++.|+.
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence 44467889999999999887654 3599999999987543 112222356899999 88887776654
Q ss_pred ------EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCce
Q 021399 76 ------AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI 149 (313)
Q Consensus 76 ------v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 149 (313)
|++|++.+++.. ...+.....+...+
T Consensus 239 ~~~~~~v~~~~lgt~~~~------------------------------------------------~~lv~~~~~~~~~~ 270 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQSA------------------------------------------------DQPVFATPELPKRG 270 (741)
T ss_dssp CCCCCEEEEEETTSCGGG------------------------------------------------CEEEECCTTCTTCE
T ss_pred CCCCCEEEEEECCCCchh------------------------------------------------CEEEeccCCCCeEE
Confidence 445554432100 00011111122346
Q ss_pred EEEEEccCCCEEEEeeCCC-----eEEEEECCCC--ceeeecccccCceeceEEEEECCCCCEEEEeeCC----CcEEEE
Q 021399 150 NRAVWGPLNRTIISAGEDA-----IVRIWDTETG--KLLKESDKETGHKKTITSLAKAADGSHFLTGSLD----KSAKLW 218 (313)
Q Consensus 150 ~~~~~~~~~~~i~t~~~d~-----~i~lwd~~~~--~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d----g~i~iw 218 (313)
..+.|+|+|++++..+.++ .|++||+.++ .....+. .+........ +++|+.|+..+.+ +.|.+|
T Consensus 271 ~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~ 346 (741)
T 1yr2_A 271 HGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALI---PDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRV 346 (741)
T ss_dssp EEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEE---CSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEE
T ss_pred EEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEec---CCCCceEEEE-eccCCEEEEEECCCCCCCEEEEE
Confidence 7788999999888776543 8999998765 3123332 1222333333 4889988887764 459999
Q ss_pred ECCCCc-EEEEEec--CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccc-cccceeEE
Q 021399 219 DARTLE-LIKTYVT--ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKG-HFGPINAL 294 (313)
Q Consensus 219 d~~~~~-~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~ 294 (313)
|++++. ....+.. ...+..+++. ++.++++...++. ..+..++.. +.....+.. +.+.|..+
T Consensus 347 d~~~~~~~~~~l~~~~~~~l~~~~~~--~~~lv~~~~~dg~-----------~~l~~~~~~-g~~~~~l~~~~~~~v~~~ 412 (741)
T 1yr2_A 347 DLSGSTPRFDTVVPESKDNLESVGIA--GNRLFASYIHDAK-----------SQVLAFDLD-GKPAGAVSLPGIGSASGL 412 (741)
T ss_dssp ECSSSSCEEEEEECCCSSEEEEEEEE--BTEEEEEEEETTE-----------EEEEEEETT-SCEEEECBCSSSCEEEEE
T ss_pred eCCCCccccEEEecCCCCeEEEEEEE--CCEEEEEEEECCE-----------EEEEEEeCC-CCceeeccCCCCeEEEEe
Confidence 998752 3333332 2234455554 5566665443332 122223321 222222322 35678999
Q ss_pred EECCCCCeeEEEEE
Q 021399 295 AFNPDGKRYGFLLL 308 (313)
Q Consensus 295 ~fspdgk~~~~~~~ 308 (313)
+++||++.+.|...
T Consensus 413 ~~s~d~~~l~~~~s 426 (741)
T 1yr2_A 413 SGRPGDRHAYLSFS 426 (741)
T ss_dssp ECCBTCSCEEEEEE
T ss_pred ecCCCCCEEEEEEc
Confidence 99999999887654
No 193
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.48 E-value=1.6e-11 Score=104.74 Aligned_cols=237 Identities=13% Similarity=0.047 Sum_probs=128.2
Q ss_pred cceeEEEEccCCCEEEEee---------CCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC---C--cE
Q 021399 11 RPLTYLKYNKDGDLLFSCA---------KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---Q--TA 76 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s---------~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~--~v 76 (313)
..+...++ ||++++... .++.|.+||+++++.. .+ ..+..++|+|||+.++..+.+ + .|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l 87 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSEI 87 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcceE
Confidence 45677788 899887653 2567899999888653 34 568889999999988877654 3 37
Q ss_pred EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (313)
Q Consensus 77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (313)
.+||+.+++......... +..+.|+|+++.++... +. ... ... ..+..+.+.
T Consensus 88 ~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~----------------~~~--~~~--------~~~~~~~~~ 140 (347)
T 2gop_A 88 WVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKR----------------RED--EDF--------IFEDDVPAW 140 (347)
T ss_dssp EEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECC----------------CC-------------------CCCC
T ss_pred EEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccC----------------CCc--CCc--------EEEccccee
Confidence 777888776554443333 55666666554333321 10 000 000 000011111
Q ss_pred cCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC-------cEEEEECCCCcEEEE
Q 021399 156 PLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-------SAKLWDARTLELIKT 228 (313)
Q Consensus 156 ~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg-------~i~iwd~~~~~~~~~ 228 (313)
.++..+. ......|.+||+.+++.+..+.. . .+..++|+||| .+++++.++ ...+|.+++++. ..
T Consensus 141 ~~g~~~~-~~~~~~l~~~d~~~~~~~~~l~~----~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~ 212 (347)
T 2gop_A 141 FDDLGFF-DGEKTTFWIFDTESEEVIEEFEK----P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EK 212 (347)
T ss_dssp ----------CEEEEEEEETTTTEEEEEEEE----E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EE
T ss_pred ecCcccc-cCccceEEEEECCCCeEEeeecC----C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EE
Confidence 1111111 12246799999988765344331 2 67889999999 877776542 344554445443 33
Q ss_pred EecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeE-EEECCCC
Q 021399 229 YVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINA-LAFNPDG 300 (313)
Q Consensus 229 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~fspdg 300 (313)
+.....+ ..++|+++.++.++..... .......+..|| +++......+|...+.. +.|+ ||
T Consensus 213 l~~~~~~--~~~spdg~~l~~~~~~~~~------~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg 274 (347)
T 2gop_A 213 MFEKVSF--YAVDSDGERILLYGKPEKK------YMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK 274 (347)
T ss_dssp EEEEESE--EEEEECSSCEEEEECCSSS------CCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE
T ss_pred eccCcce--eeECCCCCEEEEEEccccC------CccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc
Confidence 3222223 3348999888766533210 000011233343 22222223355667776 8898 87
No 194
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.46 E-value=2.7e-10 Score=95.21 Aligned_cols=237 Identities=9% Similarity=-0.006 Sum_probs=152.3
Q ss_pred ccccccceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCC
Q 021399 6 MKGHERPLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~ 84 (313)
+..+..-..+..|+|++ ..+++...++.|..||.++++.. .+ .+...+.+++++++|+++++ . ++.|.+||..++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 44455566789999965 56666667899999999887652 33 24567999999999996554 3 568999999887
Q ss_pred eEEEEecCC-----CCeeEEEeecCCeEEEEECCCcee----ccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc
Q 021399 85 AQLFTFNFD-----SPARSVDFAVGDKLAVITTDPFME----LNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG 155 (313)
Q Consensus 85 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 155 (313)
+........ .....+.+.+++.+.+........ ......++.+.. .+.... +.......+.++|+
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~-----~g~~~~-~~~~~~~pngi~~s 157 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFP-----DHHVKK-YFDQVDISNGLDWS 157 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECT-----TSCEEE-EEEEESBEEEEEEC
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEEC-----CCCEEE-EeeccccccceEEc
Confidence 654433221 124556677776665543211000 001112222211 111111 11222345789999
Q ss_pred cCCCEE-EEeeCCCeEEEEEC--CCCcee--eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 156 PLNRTI-ISAGEDAIVRIWDT--ETGKLL--KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 156 ~~~~~i-~t~~~d~~i~lwd~--~~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
|+++.+ ++.+.++.|.+||+ .++... +.+.....+......++++++|+..++...++.|..||.++++.+..+.
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 999865 55566789999986 455431 1111111233567889999999988888778899999999999988886
Q ss_pred cC-CceeEEEec-cCCCEEEEccc
Q 021399 231 TE-RPVNAVTMS-PLLDHVVLGGG 252 (313)
Q Consensus 231 ~~-~~~~~~~~~-p~~~~~~~~~~ 252 (313)
.+ ..+.+++|. |+++.++++..
T Consensus 238 ~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 238 LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCCceEEEEeCCCCCEEEEEcC
Confidence 54 568899998 88888887654
No 195
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.43 E-value=3.6e-09 Score=87.82 Aligned_cols=265 Identities=12% Similarity=0.092 Sum_probs=165.2
Q ss_pred cccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEE-EecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCe
Q 021399 7 KGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLG-TYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGA 85 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~ 85 (313)
......+.++.++++|...++...++.|.+||.. ++... .+..+...+.++++.++++++++...++.|..||.. ++
T Consensus 16 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~ 93 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG 93 (300)
T ss_dssp SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC
T ss_pred CCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC
Confidence 3445678899999999988887788999999987 55432 233444678999999999888877778899999988 55
Q ss_pred EEEE-ec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceE-EEecCCCCceEEEEEccCCCEEE
Q 021399 86 QLFT-FN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 86 ~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
.... .. ....+..+.+.+++.+.+.....- .+..+ +.. +... ..+......+..+.+.++++.++
T Consensus 94 ~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-------~i~~~--~~~---g~~~~~~~~~~~~~~~~i~~d~~g~l~v 161 (300)
T 2qc5_A 94 FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGD-------RIGKL--TAD---GTIYEYDLPNKGSYPAFITLGSDNALWF 161 (300)
T ss_dssp EEEEECSSTTCCEEEEEECSTTCEEEEETTTT-------EEEEE--CTT---SCEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred eEEecCCCCCCCCccceECCCCCEEEEccCCC-------eEEEE--CCC---CCEEEccCCCCCCCceeEEECCCCCEEE
Confidence 4322 11 124456666766666655543110 01111 010 1111 11222345678888999999777
Q ss_pred EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe--cCCceeEEEe
Q 021399 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV--TERPVNAVTM 240 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~~~~~~ 240 (313)
+...++.|..+|. +++... +. ...+...+..++++++|...++....+.|..||. +++...... ....+..+++
T Consensus 162 ~~~~~~~i~~~~~-~g~~~~-~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~ 237 (300)
T 2qc5_A 162 TENQNNSIGRITN-TGKLEE-YP-LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITA 237 (300)
T ss_dssp EETTTTEEEEECT-TCCEEE-EE-CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEE
T ss_pred EecCCCeEEEECC-CCcEEE-ee-CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEE
Confidence 7666789999998 554332 21 1123456889999999987777767788999998 555433211 1345778899
Q ss_pred ccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399 241 SPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY 303 (313)
Q Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~ 303 (313)
.+++. ++++... ...+..++. .+.+. .+. +......+.+++++|+|+.+
T Consensus 238 d~~g~-l~v~~~~-~~~i~~~~~-~g~~~--~~~---------~~~~~~~~~~i~~~~~g~l~ 286 (300)
T 2qc5_A 238 GKNSE-IWFTEWG-ANQIGRITN-DNTIQ--EYQ---------LQTENAEPHGITFGKDGSVW 286 (300)
T ss_dssp CSTTC-EEEEETT-TTEEEEECT-TSCEE--EEE---------CCSTTCCCCCEEECTTSCEE
T ss_pred CCCCC-EEEeccC-CCeEEEECC-CCcEE--EEE---------CCccCCccceeEeCCCCCEE
Confidence 98876 4444322 233444454 22221 111 11234567899999998853
No 196
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.40 E-value=2.5e-10 Score=96.86 Aligned_cols=221 Identities=11% Similarity=0.004 Sum_probs=141.0
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCC-----CceEEEEECCCCCeEEEee-CCCcEEEEECCCC
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHN-----GAVWCCDVSRDSMTLITGS-ADQTAKLWNVETG 84 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~-----~~V~~~~~~~~~~~l~s~s-~D~~v~vWd~~~~ 84 (313)
..+..++|+++++.+++...++.|.+||.++++...++.... .....+++ .+++++++.. .+++|.++|+.++
T Consensus 84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~ 162 (328)
T 3dsm_A 84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETD 162 (328)
T ss_dssp SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTT
T ss_pred CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCC
Confidence 457889999999555555489999999999998877776433 13445666 4455555543 4899999999999
Q ss_pred eEEEEecCCCCeeEEEeecCCeEEEEECCCceecc---ccceeeeeeeCCCCCCCceEEEecCC-CCceEEEEEccCCCE
Q 021399 85 AQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN---SAIHVKRIARDPADQGGESVLILKGP-QGRINRAVWGPLNRT 160 (313)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~ 160 (313)
+.+..+........+.+.+++++.+.......... ....+..+ +. ...+....+..+ ......++++|++++
T Consensus 163 ~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i--d~--~t~~v~~~~~~~~g~~p~~la~~~d~~~ 238 (328)
T 3dsm_A 163 KVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI--DA--ETFTVEKQFKFKLGDWPSEVQLNGTRDT 238 (328)
T ss_dssp EEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE--ET--TTTEEEEEEECCTTCCCEEEEECTTSCE
T ss_pred eEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEE--EC--CCCeEEEEEecCCCCCceeEEEecCCCE
Confidence 88777766555566777887776655433210000 00011111 11 112222233222 235678999999888
Q ss_pred EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC-CCCEEEEe----eCCCcEEEEECCCCcEEEEEecCCce
Q 021399 161 IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA-DGSHFLTG----SLDKSAKLWDARTLELIKTYVTERPV 235 (313)
Q Consensus 161 i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~----s~dg~i~iwd~~~~~~~~~~~~~~~~ 235 (313)
+.++.. .|.+||..+++...... ..........++++| ++...++. ..++.|.+||.+ ++.+.++......
T Consensus 239 lyv~~~--~v~~~d~~t~~~~~~~~-~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P 314 (328)
T 3dsm_A 239 LYWINN--DIWRMPVEADRVPVRPF-LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIP 314 (328)
T ss_dssp EEEESS--SEEEEETTCSSCCSSCS-BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESE
T ss_pred EEEEcc--EEEEEECCCCceeeeee-ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCc
Confidence 877655 89999998876532211 111245688899999 56666665 568899999998 8888887644434
Q ss_pred eEEEe
Q 021399 236 NAVTM 240 (313)
Q Consensus 236 ~~~~~ 240 (313)
..++|
T Consensus 315 ~~~~~ 319 (328)
T 3dsm_A 315 GAFCW 319 (328)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 44444
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.39 E-value=2.2e-10 Score=95.49 Aligned_cols=227 Identities=12% Similarity=0.059 Sum_probs=137.9
Q ss_pred EEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccc
Q 021399 44 RLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAI 122 (313)
Q Consensus 44 ~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (313)
.+..+..+.....+++|+|+++ +++++..++.|..||..++ ..........+..+.+.+++.+.+..... ..+
T Consensus 19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~~~~dg~l~v~~~~~-----~~i 92 (296)
T 3e5z_A 19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSPEMHPSHHQNGHCLNKQGHLIACSHGL-----RRL 92 (296)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEEEESSCSSEEEEEECTTCCEEEEETTT-----TEE
T ss_pred cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEEEECCCCCcceeeECCCCcEEEEecCC-----CeE
Confidence 3445555666778999999998 7888888999999999887 32222234456778888877766654321 001
Q ss_pred eeeeeeeCCCCCCCceEEEec---C-CCCceEEEEEccCCCEEEE----ee-------------CCCeEEEEECCCCcee
Q 021399 123 HVKRIARDPADQGGESVLILK---G-PQGRINRAVWGPLNRTIIS----AG-------------EDAIVRIWDTETGKLL 181 (313)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~---~-~~~~i~~~~~~~~~~~i~t----~~-------------~d~~i~lwd~~~~~~~ 181 (313)
..++ .. .+....... + ....++.++++|+|+.+++ |+ ..+.|..++.. ++.
T Consensus 93 ~~~d----~~--~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~- 164 (296)
T 3e5z_A 93 ERQR----EP--GGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL- 164 (296)
T ss_dssp EEEC----ST--TCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-
T ss_pred EEEc----CC--CCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-
Confidence 1110 00 111111111 1 1234567889999998887 33 13467777765 432
Q ss_pred eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC-CCcE---EEEEe-cCCceeEEEeccCCCEEEEcccccCc
Q 021399 182 KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR-TLEL---IKTYV-TERPVNAVTMSPLLDHVVLGGGQDAS 256 (313)
Q Consensus 182 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~-~~~~---~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~ 256 (313)
..+. .+......++|+|+++.+++.+.++.|.+||++ +++. ...+. ....+..+++++++... ++. ..
T Consensus 165 ~~~~---~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~-v~~---~~ 237 (296)
T 3e5z_A 165 SAPI---RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIW-ASA---GD 237 (296)
T ss_dssp EEEE---CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEE-EEE---TT
T ss_pred EEee---cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEE-EEc---CC
Confidence 2221 244567889999999998888888999999987 4554 22221 22345678999988744 433 22
Q ss_pred eeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEE-CCCCCeeEE
Q 021399 257 AVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAF-NPDGKRYGF 305 (313)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~f-spdgk~~~~ 305 (313)
.+..++.. ++.+..+..+.. +++++| +||++.+..
T Consensus 238 ~v~~~~~~-------------g~~~~~~~~~~~-~~~~~f~~~d~~~L~v 273 (296)
T 3e5z_A 238 GVHVLTPD-------------GDELGRVLTPQT-TSNLCFGGPEGRTLYM 273 (296)
T ss_dssp EEEEECTT-------------SCEEEEEECSSC-CCEEEEESTTSCEEEE
T ss_pred eEEEECCC-------------CCEEEEEECCCC-ceeEEEECCCCCEEEE
Confidence 34444432 222233344555 899999 689887654
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.39 E-value=4.3e-11 Score=111.95 Aligned_cols=178 Identities=11% Similarity=0.075 Sum_probs=113.9
Q ss_pred ccCCCEEEEeeCCC---CeEEEeC--CCCcEEEEe------cCCCCceEEEEECCCCCeEE-----EeeCCCcEEEEECC
Q 021399 19 NKDGDLLFSCAKDH---TPTVWFA--DNGERLGTY------RGHNGAVWCCDVSRDSMTLI-----TGSADQTAKLWNVE 82 (313)
Q Consensus 19 s~~g~~l~s~s~d~---~i~iw~~--~~~~~~~~~------~~H~~~V~~~~~~~~~~~l~-----s~s~D~~v~vWd~~ 82 (313)
+|+|++++....++ .-.||.. ..++....+ ++|...+.+++|||||++++ +|+.+.+|++||+.
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~ 155 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD 155 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence 48899888877654 3556643 344322222 25666789999999999888 56667899999998
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
+++.+. . .. +. ......+.|+|+++.|+
T Consensus 156 tg~~~~--~--~~----------------------------------------------~~--~~~~~~~~wspDg~~l~ 183 (695)
T 2bkl_A 156 SGEWSK--V--DV----------------------------------------------IE--GGKYATPKWTPDSKGFY 183 (695)
T ss_dssp TCCBCS--S--CC----------------------------------------------BS--CCTTCCCEECTTSSEEE
T ss_pred CCCCcC--C--cc----------------------------------------------cC--cccccceEEecCCCEEE
Confidence 875310 0 00 00 00113467899999898
Q ss_pred EeeCCCe-------------EEEEECCCCcee-eecccccCceeceEEEEECCCCCEEEEeeCCC----cEEEEECCCCc
Q 021399 163 SAGEDAI-------------VRIWDTETGKLL-KESDKETGHKKTITSLAKAADGSHFLTGSLDK----SAKLWDARTLE 224 (313)
Q Consensus 163 t~~~d~~-------------i~lwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg----~i~iwd~~~~~ 224 (313)
.++.|.. |++|++.++..- ..+.....|...+..+.|+|||++|+.++.++ .|.+||..+++
T Consensus 184 ~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~ 263 (695)
T 2bkl_A 184 YEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD 263 (695)
T ss_dssp EEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS
T ss_pred EEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc
Confidence 8887765 999999876521 11111223455788999999999999888776 67778776655
Q ss_pred EEEEEecCCceeEEEeccCCCEEEEc
Q 021399 225 LIKTYVTERPVNAVTMSPLLDHVVLG 250 (313)
Q Consensus 225 ~~~~~~~~~~~~~~~~~p~~~~~~~~ 250 (313)
...-...........+ |+++ +++.
T Consensus 264 ~~~l~~~~~~~~~~~~-~~g~-l~~~ 287 (695)
T 2bkl_A 264 FRLLVKGVGAKYEVHA-WKDR-FYVL 287 (695)
T ss_dssp CEEEEECSSCCEEEEE-ETTE-EEEE
T ss_pred eEEeecCCCceEEEEe-cCCc-EEEE
Confidence 4333333333444445 5666 5554
No 199
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.38 E-value=3.2e-09 Score=91.63 Aligned_cols=270 Identities=13% Similarity=0.007 Sum_probs=154.8
Q ss_pred EEccCCCEEEEeeC--CC---CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee----------CCCcEEEEEC
Q 021399 17 KYNKDGDLLFSCAK--DH---TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNV 81 (313)
Q Consensus 17 ~fs~~g~~l~s~s~--d~---~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s----------~D~~v~vWd~ 81 (313)
...|++++++.... .. .|.++|.++++.+.++.....+ .++++||++.++.+. .+++|.+||+
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 45688888887764 22 7899999999998888764444 899999999887775 3688999999
Q ss_pred CCCeEEEEecCC--------CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE-ecCCCCceEEE
Q 021399 82 ETGAQLFTFNFD--------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI-LKGPQGRINRA 152 (313)
Q Consensus 82 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~ 152 (313)
.+.+.+..+... .....+.++|+++.+++..... ...+.+.+ . .++.+.. +.... ++
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~---~~~v~viD-~------t~~~~~~~i~~~~----~~ 170 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA---GPAVGLVV-Q------GGSSDDQLLSSPT----CY 170 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCC---CCeEEEEE-C------CCCEEeEEcCCCc----eE
Confidence 988776655432 2345678888877766643210 01111111 1 1222222 22111 12
Q ss_pred EEccCC-CEEEEeeCCCeEEEEECCCCceeeeccc---ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc--EE
Q 021399 153 VWGPLN-RTIISAGEDAIVRIWDTETGKLLKESDK---ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE--LI 226 (313)
Q Consensus 153 ~~~~~~-~~i~t~~~d~~i~lwd~~~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~--~~ 226 (313)
.+.|.+ +.+++.+.|+.+.++|. +++....... ..+.........+.+++..++..+.++.+.+.|+.+.. .+
T Consensus 171 ~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~ 249 (373)
T 2mad_H 171 HIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNK 249 (373)
T ss_pred EEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEe
Confidence 233443 45566778999999999 7765532110 01111112234556666655555578899999987653 22
Q ss_pred EEEec-----------CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEE
Q 021399 227 KTYVT-----------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALA 295 (313)
Q Consensus 227 ~~~~~-----------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~ 295 (313)
..+.. +.....++++|+++.++++...... +.++....++..+|..+.+.+..+. -....+.++
T Consensus 250 ~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~----~~~~~~~~~V~VID~~t~~vv~~i~-~g~~p~~i~ 324 (373)
T 2mad_H 250 APIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA----WKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAIS 324 (373)
T ss_pred eeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCc----ccccCCCCeEEEEECCCCEEEEEEE-CCCCcCeEE
Confidence 32211 1112336677777766665321000 0001111234555665555544443 234679999
Q ss_pred ECCCCCeeEEEEE
Q 021399 296 FNPDGKRYGFLLL 308 (313)
Q Consensus 296 fspdgk~~~~~~~ 308 (313)
|+||||++.|...
T Consensus 325 ~s~Dg~~~l~v~~ 337 (373)
T 2mad_H 325 VAQDGGPDLYALS 337 (373)
T ss_pred ECCCCCeEEEEEc
Confidence 9999997666543
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.37 E-value=2.4e-10 Score=97.98 Aligned_cols=233 Identities=10% Similarity=0.033 Sum_probs=141.6
Q ss_pred EEEEccCCCEEEEee----------CCCCeEEEeCCCCcEEEEecCCC-------CceEEEEECCCCCeEEEeeC--CCc
Q 021399 15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGHN-------GAVWCCDVSRDSMTLITGSA--DQT 75 (313)
Q Consensus 15 ~~~fs~~g~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~H~-------~~V~~~~~~~~~~~l~s~s~--D~~ 75 (313)
.+.+||||++|+.++ .++.|.+||..+.+.+.++.-.. ..-..++|+|||++++.+.. ++.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~ 161 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 161 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence 399999999988776 36789999999999988774211 13346899999998877753 689
Q ss_pred EEEEECCCCeEEEEecCCCC--------eeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399 76 AKLWNVETGAQLFTFNFDSP--------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (313)
Q Consensus 76 v~vWd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (313)
|.++|+.+++.+..+..... ...+..+++++++++.......+ ........+ -...
T Consensus 162 VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v------~~~~~~~~~----------~~~~ 225 (386)
T 3sjl_D 162 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP------EITHTEVFH----------PEDE 225 (386)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCC------EEEECCCCS----------CTTS
T ss_pred EEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeE------EEeecceec----------cccc
Confidence 99999999998877654321 01123344444444433211110 000000000 0001
Q ss_pred ce-EEEEE-ccCCCEEEEeeCCCeEEEEECCCCc--eeeecccc------cC-ceeceEEEEECCCCCEEEEeeC-----
Q 021399 148 RI-NRAVW-GPLNRTIISAGEDAIVRIWDTETGK--LLKESDKE------TG-HKKTITSLAKAADGSHFLTGSL----- 211 (313)
Q Consensus 148 ~i-~~~~~-~~~~~~i~t~~~d~~i~lwd~~~~~--~~~~~~~~------~~-h~~~v~~~~~s~~~~~l~s~s~----- 211 (313)
++ ....| .++++.+ ..+.++.|++.|..... .+...... .+ .......++++++++.++....
T Consensus 226 ~~~~~~~~~~~dG~~~-~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~ 304 (386)
T 3sjl_D 226 FLINHPAYSQKAGRLV-WPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW 304 (386)
T ss_dssp CBCSCCEEETTTTEEE-EEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred cccccceeEcCCCcEE-EEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence 11 11234 3556443 35668999999986553 22221100 01 1123345677899998887653
Q ss_pred -----CCcEEEEECCCCcEEEEEecCCceeEEEeccCCC-EEEEcccccCceeEeeccCC
Q 021399 212 -----DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHRA 265 (313)
Q Consensus 212 -----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~ 265 (313)
.+.|.+.|+++++.+..+.....+..++++|++. .++++.+. .+.+.+.|...
T Consensus 305 ~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~-~~~VsViD~~t 363 (386)
T 3sjl_D 305 RHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG-DKTLYIHDAES 363 (386)
T ss_dssp CTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETT-TTEEEEEETTT
T ss_pred ccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCC-CCeEEEEECCC
Confidence 2579999999999999998777889999999997 56654332 23344444433
No 201
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.36 E-value=4.6e-11 Score=111.66 Aligned_cols=229 Identities=15% Similarity=0.104 Sum_probs=134.7
Q ss_pred ccccceeEEEEccCCCEEEE-----eeCCCCeEEEeCCCCcEEEE-ecCCCCceEEEEECCCCCeEEEeeCCCc------
Q 021399 8 GHERPLTYLKYNKDGDLLFS-----CAKDHTPTVWFADNGERLGT-YRGHNGAVWCCDVSRDSMTLITGSADQT------ 75 (313)
Q Consensus 8 ~h~~~v~~~~fs~~g~~l~s-----~s~d~~i~iw~~~~~~~~~~-~~~H~~~V~~~~~~~~~~~l~s~s~D~~------ 75 (313)
+|...+..++|||||++|+- |+.+..|++||+++++.+.. +.+. ....++|+ |++.|+-++.|..
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV--KFSGISWL-GNEGFFYSSYDKPDGSELS 202 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE--ESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc--eeccEEEe-CCCEEEEEEecCccccccc
Confidence 45556888999999998884 33446799999999986532 2211 12467899 9998887777643
Q ss_pred -------EEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe--cC-C
Q 021399 76 -------AKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL--KG-P 145 (313)
Q Consensus 76 -------v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~ 145 (313)
|++|++.++.. +..... .. +
T Consensus 203 ~~~~~~~v~~~~lgt~~~--------------------------------------------------~~~~v~~~~~~~ 232 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQE--------------------------------------------------DDRLVFGAIPAQ 232 (693)
T ss_dssp --CCCCEEEEEETTSCGG--------------------------------------------------GCEEEESCSGGG
T ss_pred ccCCCcEEEEEECCCCcc--------------------------------------------------cceEEEecCCCC
Confidence 66666544321 001111 11 2
Q ss_pred CCceEEEEEccCCCEEEEee----CCCeEEEEECCCCc-eeeecccccCceeceEEEEECCCCCEEE-EeeCC---CcEE
Q 021399 146 QGRINRAVWGPLNRTIISAG----EDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAADGSHFL-TGSLD---KSAK 216 (313)
Q Consensus 146 ~~~i~~~~~~~~~~~i~t~~----~d~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~d---g~i~ 216 (313)
......+.|+|++++++... .+..|+++|+.++. ....+. .+....... ++++|..|+ ....| +.|.
T Consensus 233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~---~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~ 308 (693)
T 3iuj_A 233 HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ---GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLV 308 (693)
T ss_dssp CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE---CSSSSCEEE-EEEETTEEEEEECTTCTTCEEE
T ss_pred CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe---CCCCceEEE-EeccCCEEEEEECCCCCCCEEE
Confidence 23355678899998875433 23589999987653 223332 233333443 555666554 44333 5789
Q ss_pred EEECCCCcE--EEEEe-cCCceeEEEeccCCCEEEEcccccCc-eeEeeccCCCceeeeeeehhhhhhhccc-cccccce
Q 021399 217 LWDARTLEL--IKTYV-TERPVNAVTMSPLLDHVVLGGGQDAS-AVTTTDHRAGKFEAKFFDKILQEEIGGV-KGHFGPI 291 (313)
Q Consensus 217 iwd~~~~~~--~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V 291 (313)
.+|++++.. .+.+. +...+. .|+|+++.+++....++. .+..++...+. ...+ ....+.+
T Consensus 309 ~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-------------~~~l~~p~~~~~ 373 (693)
T 3iuj_A 309 TVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-------------VREVALPGLGSV 373 (693)
T ss_dssp EEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-------------EEEECCSSSSEE
T ss_pred EEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-------------eEEeecCCCceE
Confidence 999987654 23333 222232 889999988876544432 23333332111 1111 1234567
Q ss_pred eEEEECCCCCeeEEEEE
Q 021399 292 NALAFNPDGKRYGFLLL 308 (313)
Q Consensus 292 ~~~~fspdgk~~~~~~~ 308 (313)
..++++||++.+.|...
T Consensus 374 ~~~~~~~d~~~l~~~~s 390 (693)
T 3iuj_A 374 SGFNGKHDDPALYFGFE 390 (693)
T ss_dssp EECCCCTTCSCEEEEEE
T ss_pred EeeecCCCCCEEEEEec
Confidence 78888999999887653
No 202
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.36 E-value=5.9e-09 Score=89.92 Aligned_cols=237 Identities=8% Similarity=-0.043 Sum_probs=135.4
Q ss_pred EEEEccCCCEEEEee----------CCCCeEEEeCCCCcEEEEecCC-------CCceEEEEECCCCCeEEEeeC--CCc
Q 021399 15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGH-------NGAVWCCDVSRDSMTLITGSA--DQT 75 (313)
Q Consensus 15 ~~~fs~~g~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~H-------~~~V~~~~~~~~~~~l~s~s~--D~~ 75 (313)
.+.|||||++|+.+. .++.|.+||..+.+.+.++.-- ...-..++|+|||++++.+.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 799999999999886 3678999999998887766421 122346899999999888764 578
Q ss_pred EEEEECCCCeEEEE-ecCCCCeeEEEeecCC--eEEEEECCCcee-ccccceeeeeeeCCCCCCCceEEEecCCCCceEE
Q 021399 76 AKLWNVETGAQLFT-FNFDSPARSVDFAVGD--KLAVITTDPFME-LNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (313)
Q Consensus 76 v~vWd~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (313)
|.++| .+++.+.. +..... +.+.+.+ .+.....+.... +............ .. ...+.......
T Consensus 150 v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~------~~--~~~~~~p~~~~ 217 (373)
T 2mad_H 150 VGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLV------GA--MLTAAQNLLTQ 217 (373)
T ss_pred EEEEE-CCCCEEeEEcCCCce---EEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEec------cc--cccCCcceeec
Confidence 99999 99887766 543221 2222211 111111111100 0000000000000 00 00011101112
Q ss_pred EEEccCCCEEEEeeCCCeEEEEECCCCce--eeeccccc------C-ceeceEEEEECCCCCEEEEeeC----------C
Q 021399 152 AVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKET------G-HKKTITSLAKAADGSHFLTGSL----------D 212 (313)
Q Consensus 152 ~~~~~~~~~i~t~~~d~~i~lwd~~~~~~--~~~~~~~~------~-h~~~v~~~~~s~~~~~l~s~s~----------d 212 (313)
..+.+++..++..+..+.+.+.|+..... +..+.... + .......++++++++.+..+.. +
T Consensus 218 ~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~ 297 (373)
T 2mad_H 218 PAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAA 297 (373)
T ss_pred ceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCC
Confidence 33444444444444678899999865421 12111000 0 0122344778999998877653 3
Q ss_pred CcEEEEECCCCcEEEEEecCCceeEEEeccCCC-EEEEcccccCceeEeeccC
Q 021399 213 KSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHR 264 (313)
Q Consensus 213 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~ 264 (313)
+.|.++|+++++.+.++........++|+|+++ .++++. ...+.+.+.|..
T Consensus 298 ~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~-~~~~~V~ViD~~ 349 (373)
T 2mad_H 298 KEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALS-AGTEVLHIYDAG 349 (373)
T ss_pred CeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEc-CCCCeEEEEECC
Confidence 579999999999999997777789999999999 555543 223344444443
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.35 E-value=3.6e-10 Score=92.69 Aligned_cols=185 Identities=8% Similarity=-0.047 Sum_probs=125.9
Q ss_pred cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec-CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (313)
Q Consensus 9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~ 87 (313)
+...+.+++++++|+.+++.. ++.|.+||.+.... ..+. .....+..++++++|+++++...++.|.+|+..+....
T Consensus 65 ~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~ 142 (270)
T 1rwi_B 65 GLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT 142 (270)
T ss_dssp SCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE
T ss_pred CcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE
Confidence 335678999999999777666 88999999766543 2333 23357889999999998888777888998875432211
Q ss_pred EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (313)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d 167 (313)
.. ..........++++++++.+++...+
T Consensus 143 ~~----------------------------------------------------~~~~~~~p~~i~~~~~g~l~v~~~~~ 170 (270)
T 1rwi_B 143 VL----------------------------------------------------PFTGLNDPDGVAVDNSGNVYVTDTDN 170 (270)
T ss_dssp EC----------------------------------------------------CCCSCCSCCCEEECTTCCEEEEEGGG
T ss_pred ee----------------------------------------------------ccccCCCceeEEEeCCCCEEEEECCC
Confidence 00 00011233456778888877777778
Q ss_pred CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEeccCCCE
Q 021399 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDH 246 (313)
Q Consensus 168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~~~ 246 (313)
+.|.+||........... .+...+..++++++|..+++...++.|.+||............ ...+..++++|++.
T Consensus 171 ~~i~~~~~~~~~~~~~~~---~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~- 246 (270)
T 1rwi_B 171 NRVVKLEAESNNQVVLPF---TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRT- 246 (270)
T ss_dssp TEEEEECTTTCCEEECCC---SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCC-
T ss_pred CEEEEEecCCCceEeecc---cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCC-
Confidence 899999987655432211 2235688999999998778777789999999977554332212 24578899999886
Q ss_pred EEEcc
Q 021399 247 VVLGG 251 (313)
Q Consensus 247 ~~~~~ 251 (313)
++++.
T Consensus 247 l~v~~ 251 (270)
T 1rwi_B 247 VYVAD 251 (270)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55543
No 204
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.34 E-value=5.2e-10 Score=93.81 Aligned_cols=237 Identities=10% Similarity=0.084 Sum_probs=145.6
Q ss_pred cccccccccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399 3 PILMKGHERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
+..|..+........|+|+|+ ++++...++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~ 114 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA 114 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence 345555666678899999998 6677777899999987 454 3456666778899999999987766556688999998
Q ss_pred CCCeEEEEec-C----CCCeeEEEeecCCeEEEEECC-Cceec---------cccceeeeeeeCCCCCCCceEEEecCCC
Q 021399 82 ETGAQLFTFN-F----DSPARSVDFAVGDKLAVITTD-PFMEL---------NSAIHVKRIARDPADQGGESVLILKGPQ 146 (313)
Q Consensus 82 ~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (313)
+ ++...... . ...+..+.+.+++.+.+.... ..... .....++.+ ++. .+...... ..
T Consensus 115 ~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~--d~~--~g~~~~~~--~~ 187 (305)
T 3dr2_A 115 D-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL--PPD--GSPLQRMA--DL 187 (305)
T ss_dssp T-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE--CSS--SCCCEEEE--EE
T ss_pred C-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEE--cCC--CCcEEEEe--cC
Confidence 6 54332221 1 122345666776665543110 00000 000112221 111 11111111 22
Q ss_pred CceEEEEEccCCCEEEEeeCC------CeEEEEECCCCceeeecc-cccCceeceEEEEECCCCCEEEEeeCCCcEEEEE
Q 021399 147 GRINRAVWGPLNRTIISAGED------AIVRIWDTETGKLLKESD-KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWD 219 (313)
Q Consensus 147 ~~i~~~~~~~~~~~i~t~~~d------~~i~lwd~~~~~~~~~~~-~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd 219 (313)
...+.++|+|+++.+..+... +.|.+||+..+. +.... ...........++++++|+..++ ..+ .|.+||
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~-gv~~~~ 264 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGT-GVCVFD 264 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEEC-CSS-EEEEEC
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEe-cCC-cEEEEC
Confidence 345778999999977766654 789999986543 21110 00111233456889999995444 444 499999
Q ss_pred CCCCcEEEEEecCCceeEEEeccCCCEEEEccc
Q 021399 220 ARTLELIKTYVTERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 252 (313)
. .++.+..+..+..+..++|.|+++.++++..
T Consensus 265 ~-~g~~~~~~~~~~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 265 S-DGQLLGHIPTPGTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp T-TSCEEEEEECSSCCCEEEECTTSCEEEEEET
T ss_pred C-CCCEEEEEECCCceeEEEEeCCCCEEEEEcC
Confidence 8 4777777765556888999998888887653
No 205
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.34 E-value=5.1e-11 Score=102.49 Aligned_cols=144 Identities=8% Similarity=-0.005 Sum_probs=111.8
Q ss_pred cccccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
|+.+..+.+ |+.++| |+++|+.+ .++.|++||+.+......+..|+..|.++.+.+.+ +++++.||.+.+||+.
T Consensus 81 ~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~ 154 (388)
T 1xip_A 81 FKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLR 154 (388)
T ss_dssp CSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETT
T ss_pred ceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEcc
Confidence 444455677 999999 89999998 88999999998877777778888899888776543 8889999999999998
Q ss_pred CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 83 TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
++.... +...|.+++|+|.| ++
T Consensus 155 ~~~~~~--------------------------------------------------------~~~~Vs~v~WSpkG--~~ 176 (388)
T 1xip_A 155 TKSTKQ--------------------------------------------------------LAQNVTSFDVTNSQ--LA 176 (388)
T ss_dssp TCCEEE--------------------------------------------------------EEESEEEEEECSSE--EE
T ss_pred CCcccc--------------------------------------------------------ccCCceEEEEcCCc--eE
Confidence 764321 01257789999998 67
Q ss_pred EeeCCCeEEEEECCCCce--eeecc------cccCceeceEEEEECCCCCEEEEee
Q 021399 163 SAGEDAIVRIWDTETGKL--LKESD------KETGHKKTITSLAKAADGSHFLTGS 210 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~--~~~~~------~~~~h~~~v~~~~~s~~~~~l~s~s 210 (313)
.|..||.+++|+...+.. .+++. ...+|...|.++.|.+++.++++-.
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 788999999998876553 33331 1124678899999999999988743
No 206
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.31 E-value=1.1e-09 Score=102.54 Aligned_cols=202 Identities=11% Similarity=0.040 Sum_probs=126.5
Q ss_pred eeEEEEccCCCEEEEeeCCCC----------------eEEEeCCCCc----EEEEecCCCCceEEEEECCCCCeEEEeeC
Q 021399 13 LTYLKYNKDGDLLFSCAKDHT----------------PTVWFADNGE----RLGTYRGHNGAVWCCDVSRDSMTLITGSA 72 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~d~~----------------i~iw~~~~~~----~~~~~~~H~~~V~~~~~~~~~~~l~s~s~ 72 (313)
+..++|+|||+.|+.++.++. |++|++.++. .+.....|...+..++|+|||+.++..+.
T Consensus 173 ~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~ 252 (710)
T 2xdw_A 173 FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIR 252 (710)
T ss_dssp SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEE
T ss_pred cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEE
Confidence 567999999999999998876 9999998875 33333446667889999999998877654
Q ss_pred -----CCcEEEEECCC------Ce--EEEEecCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCce
Q 021399 73 -----DQTAKLWNVET------GA--QLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGES 138 (313)
Q Consensus 73 -----D~~v~vWd~~~------~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (313)
+..|.+||+.+ +. ............. .+.+ ++.+.+...... ....+..+. ........
T Consensus 253 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~----~~~~l~~~d--~~~~~~~~ 325 (710)
T 2xdw_A 253 EGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHS----PNYRLINID--FTDPEESK 325 (710)
T ss_dssp CSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTC----TTCEEEEEE--TTSCCGGG
T ss_pred ccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCC----CCCEEEEEe--CCCCCccc
Confidence 57899999976 42 2222222222222 3454 445544433210 011111111 11111001
Q ss_pred EEEecCCCC--ceEEEEEccCCCEEEEeeCCCe--EEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEe----e
Q 021399 139 VLILKGPQG--RINRAVWGPLNRTIISAGEDAI--VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG----S 210 (313)
Q Consensus 139 ~~~~~~~~~--~i~~~~~~~~~~~i~t~~~d~~--i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~----s 210 (313)
...+..+.. .+..+.|++.+..+++...++. |.+||+.+++.+..+. .+...+..++++|+++.++.. .
T Consensus 326 ~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~---~~~~~v~~~~~s~d~~~l~~~~ss~~ 402 (710)
T 2xdw_A 326 WKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP---LEVGSVVGYSGQKKDTEIFYQFTSFL 402 (710)
T ss_dssp CEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC---CCSSEEEEEECCTTCSEEEEEEECSS
T ss_pred ceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC---CCCceEEEEecCCCCCEEEEEEeCCC
Confidence 122223322 5777888877778888888874 6667876776655543 346678889999999876633 2
Q ss_pred CCCcEEEEECCCCc
Q 021399 211 LDKSAKLWDARTLE 224 (313)
Q Consensus 211 ~dg~i~iwd~~~~~ 224 (313)
..+++..||+++++
T Consensus 403 ~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 403 SPGIIYHCDLTKEE 416 (710)
T ss_dssp CCCEEEEEETTSSS
T ss_pred CCCEEEEEECCCCc
Confidence 35789999998876
No 207
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.29 E-value=7.5e-08 Score=79.71 Aligned_cols=220 Identities=10% Similarity=0.006 Sum_probs=141.2
Q ss_pred cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE-EEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (313)
Q Consensus 9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~-~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~ 87 (313)
+...+.+++++++|..+++...++.|..|+.+ ++. ...+......+.++++.++++++++...++.|.+||. +++..
T Consensus 55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~ 132 (299)
T 2z2n_A 55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR 132 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE
T ss_pred ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE
Confidence 34568899999999988887778889999876 332 2222234567899999999988888777889999998 55443
Q ss_pred EEe-c-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceE-EEecCCCCceEEEEEccCCCEEEEe
Q 021399 88 FTF-N-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 88 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
... . ....+..+.+.+++.+.+..... . .+..+ +. .+... .........+..+++.++++.+++.
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~-----~--~i~~~--~~---~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 200 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNALWFTENQN-----N--AIGRI--TE---SGDITEFKIPTPASGPVGITKGNDDALWFVE 200 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTT-----T--EEEEE--CT---TCCEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred EecCCCCCCCCceEEEcCCCCEEEEeCCC-----C--EEEEE--cC---CCcEEEeeCCCCCCcceeEEECCCCCEEEEc
Confidence 222 1 12345666677666665544321 0 01111 11 11111 1122334567788999999877776
Q ss_pred eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec---CCceeEEEec
Q 021399 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---ERPVNAVTMS 241 (313)
Q Consensus 165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~ 241 (313)
..++.|.+||. +++.. .+. ...+...+.+++++++|...++...++.|..||. +++ +..+.. ...+.++++
T Consensus 201 ~~~~~i~~~~~-~g~~~-~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~- 274 (299)
T 2z2n_A 201 IIGNKIGRITT-SGEIT-EFK-IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF- 274 (299)
T ss_dssp TTTTEEEEECT-TCCEE-EEE-CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-
T ss_pred cCCceEEEECC-CCcEE-EEE-CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-
Confidence 67889999998 55532 221 1224467889999999997777667889999998 443 334422 235677888
Q ss_pred cCCCEEE
Q 021399 242 PLLDHVV 248 (313)
Q Consensus 242 p~~~~~~ 248 (313)
+.+...+
T Consensus 275 ~~g~l~v 281 (299)
T 2z2n_A 275 DGETIWF 281 (299)
T ss_dssp CSSCEEE
T ss_pred cCCCEEE
Confidence 6655333
No 208
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.28 E-value=2.3e-09 Score=91.90 Aligned_cols=271 Identities=13% Similarity=0.061 Sum_probs=158.7
Q ss_pred EEEccCCCEEEEeeC-----CCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee----------CCCcEEEEE
Q 021399 16 LKYNKDGDLLFSCAK-----DHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWN 80 (313)
Q Consensus 16 ~~fs~~g~~l~s~s~-----d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s----------~D~~v~vWd 80 (313)
....|+++.++.... ++.|.+.|..+.+.+.++..-..+ . ++++|||+.++.++ .+++|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 456799999888876 678999999999999988765555 4 99999999887765 367899999
Q ss_pred CCCCeEEEEecCC--------CCeeEEEeecCCeEEEEECC-CceeccccceeeeeeeCCCCCCCceEEEecCCCCceEE
Q 021399 81 VETGAQLFTFNFD--------SPARSVDFAVGDKLAVITTD-PFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINR 151 (313)
Q Consensus 81 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 151 (313)
..+.+.+..+... .....+.++++++.+++... .. ..+.+.+. ...+.+..+.-.. . .
T Consensus 116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~----~~VsVID~------~t~~vv~tI~v~g--~-~ 182 (386)
T 3sjl_D 116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA----PAVGVVDL------EGKAFKRMLDVPD--C-Y 182 (386)
T ss_dssp TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS----CEEEEEET------TTTEEEEEEECCS--E-E
T ss_pred CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCC----CeEEEEEC------CCCcEEEEEECCC--c-c
Confidence 9999887766432 24556788888776665431 10 11111111 1122222222111 0 1
Q ss_pred EEEccCCCEEEEeeCCCeEEEEECCC-Cceeeeccc-ccCceece-EEEEE-CCCCCEEEEeeCCCcEEEEECCCCc--E
Q 021399 152 AVWGPLNRTIISAGEDAIVRIWDTET-GKLLKESDK-ETGHKKTI-TSLAK-AADGSHFLTGSLDKSAKLWDARTLE--L 225 (313)
Q Consensus 152 ~~~~~~~~~i~t~~~d~~i~lwd~~~-~~~~~~~~~-~~~h~~~v-~~~~~-s~~~~~l~s~s~dg~i~iwd~~~~~--~ 225 (313)
..+....+.+++.+.||++.+.++.. ++....... .......+ ....| .++|..+. .+.+|++.+.|+.+.. .
T Consensus 183 ~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v 261 (386)
T 3sjl_D 183 HIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF 261 (386)
T ss_dssp EEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE
T ss_pred eeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCccee
Confidence 12222345677778899998888875 443221110 00001111 11244 46776544 5558999999997654 3
Q ss_pred EEEEe-----------cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEE
Q 021399 226 IKTYV-----------TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINAL 294 (313)
Q Consensus 226 ~~~~~-----------~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~ 294 (313)
+..+. .+.....++++|+++.++++-..+. -+.++....++..+|..+.+.+..+. -..+++.|
T Consensus 262 ~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~----~~~hk~~~~~V~viD~~t~kv~~~i~-vg~~~~~l 336 (386)
T 3sjl_D 262 LPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRD----EWRHKTASRFVVVLDAKTGERLAKFE-MGHEIDSI 336 (386)
T ss_dssp CCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECC----TTCTTSCEEEEEEEETTTCCEEEEEE-EEEEECEE
T ss_pred ecceeccccccccccccCCCcceeeECCCCCeEEEEecccc----ccccCCCCCEEEEEECCCCeEEEEEE-CCCCcceE
Confidence 33222 0112345777888888877632111 01111222345556666655555443 13478999
Q ss_pred EECCCCCeeEEEE
Q 021399 295 AFNPDGKRYGFLL 307 (313)
Q Consensus 295 ~fspdgk~~~~~~ 307 (313)
+|+||||..-|..
T Consensus 337 avs~D~~~~ly~t 349 (386)
T 3sjl_D 337 NVSQDEKPLLYAL 349 (386)
T ss_dssp EECSSSSCEEEEE
T ss_pred EECCCCCeEEEEE
Confidence 9999998555543
No 209
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.27 E-value=1.1e-08 Score=86.63 Aligned_cols=228 Identities=13% Similarity=0.027 Sum_probs=141.7
Q ss_pred ceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 12 PLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 12 ~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
...+..|+|++. .+++...++.|..||.++++.. .+. +...+.+++++++|+++++. .+ .|.+||+.+++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 346789999754 5666667889999998877643 332 34679999999999877754 44 4999999887754433
Q ss_pred cCC-----CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE-e
Q 021399 91 NFD-----SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS-A 164 (313)
Q Consensus 91 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t-~ 164 (313)
... .....+.+.+++.+.+...... .......++.+. .+.. ..+..+....+.++|+|+++.+.. .
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-~~~~~~~l~~~~------~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRK-AETGAGSIYHVA------KGKV-TKLFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETT-CCTTCEEEEEEE------TTEE-EEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCc-CCCCceEEEEEe------CCcE-EEeeCCCcccCCeEEcCCCCEEEEEE
Confidence 221 1245666777766655432100 000011222221 0111 111112234568899999986644 4
Q ss_pred eCCCeEEEEECC--CC-cee--eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC-CceeEE
Q 021399 165 GEDAIVRIWDTE--TG-KLL--KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-RPVNAV 238 (313)
Q Consensus 165 ~~d~~i~lwd~~--~~-~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~~~~ 238 (313)
+.++.|.+||.. ++ ... +.+............++++++|...++...++.|..||. +++.+..+..+ ..+.++
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred CCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 567899999975 54 311 111111122345678999999998777767789999998 56776666543 358899
Q ss_pred Eec-cCCCEEEEccc
Q 021399 239 TMS-PLLDHVVLGGG 252 (313)
Q Consensus 239 ~~~-p~~~~~~~~~~ 252 (313)
+|. |+++.++++..
T Consensus 277 af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 277 AFIGPDASRLLVTSA 291 (326)
T ss_dssp EEESTTSCEEEEEEB
T ss_pred EEecCCCCEEEEEec
Confidence 998 88888876643
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.25 E-value=1.4e-09 Score=94.86 Aligned_cols=232 Identities=8% Similarity=-0.012 Sum_probs=142.7
Q ss_pred EEEEccCCCEEEEee----------CCCCeEEEeCCCCcEEEEecCC-------CCceEEEEECCCCCeEEEeeC--CCc
Q 021399 15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGH-------NGAVWCCDVSRDSMTLITGSA--DQT 75 (313)
Q Consensus 15 ~~~fs~~g~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~H-------~~~V~~~~~~~~~~~l~s~s~--D~~ 75 (313)
.+.++|||++|+.+. .++.|.++|..+.+.+.++.-- ...-..+.|+|||++++.+.. ++.
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~ 201 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA 201 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence 799999999988876 3678999999999988876421 112345789999998888764 588
Q ss_pred EEEEECCCCeEEEEecCCCC--------eeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399 76 AKLWNVETGAQLFTFNFDSP--------ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (313)
Q Consensus 76 v~vWd~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (313)
|.+.|+.+.+.+..+..... ...+.++++++++++... ..... ..... .+.-...
T Consensus 202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~-~~~v~------~~~~~----------~~~v~~~ 264 (426)
T 3c75_H 202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFA-DGETK------VTNTE----------VFHTEDE 264 (426)
T ss_dssp EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECC-TTCCE------EEECC----------CCSCTTS
T ss_pred EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECC-CCcEE------EEeee----------eeccCCC
Confidence 99999999988776654221 112334444444443321 00000 00000 0000001
Q ss_pred ce-EEEEEccCCCEEEEeeCCCeEEEEECCCCcee--eeccc------ccC-ceeceEEEEECCCCCEEEEeeC------
Q 021399 148 RI-NRAVWGPLNRTIISAGEDAIVRIWDTETGKLL--KESDK------ETG-HKKTITSLAKAADGSHFLTGSL------ 211 (313)
Q Consensus 148 ~i-~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~--~~~~~------~~~-h~~~v~~~~~s~~~~~l~s~s~------ 211 (313)
++ ..+.+.+++..++.....+.+.+.|....... ..+.. ..+ .......+++++++++++....
T Consensus 265 p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt 344 (426)
T 3c75_H 265 LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK 344 (426)
T ss_dssp CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc
Confidence 11 12345777777766677889999998654321 11100 000 0111223678999887776642
Q ss_pred ----CCcEEEEECCCCcEEEEEecCCceeEEEeccCCC-EEEEcccccCceeEeeccC
Q 021399 212 ----DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLD-HVVLGGGQDASAVTTTDHR 264 (313)
Q Consensus 212 ----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~ 264 (313)
++.|.+.|+++.+.+.++........++|+|+++ .++++... .+.+.+.|..
T Consensus 345 hk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~-s~~VsVID~~ 401 (426)
T 3c75_H 345 HKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAG-TQTLHIYDAA 401 (426)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETT-TTEEEEEETT
T ss_pred ccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCC-CCeEEEEECC
Confidence 3579999999999999997766789999999998 66665432 2334444433
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.24 E-value=3.3e-09 Score=90.46 Aligned_cols=232 Identities=12% Similarity=0.144 Sum_probs=134.0
Q ss_pred cceeEEEEccCCCEEEEee--CCCCeEEEeCCCCcEEEEe-------cCCCCceEEEEECCCCCeEEEeeC-----CCcE
Q 021399 11 RPLTYLKYNKDGDLLFSCA--KDHTPTVWFADNGERLGTY-------RGHNGAVWCCDVSRDSMTLITGSA-----DQTA 76 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s--~d~~i~iw~~~~~~~~~~~-------~~H~~~V~~~~~~~~~~~l~s~s~-----D~~v 76 (313)
..+..++++|+|+.+++.. .++.++||.+.+++.. .+ .+|-..+..++++++++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence 5688999999999999864 2344677766555432 22 235568999999999886665433 5789
Q ss_pred EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
.+||+.+++.+..+...... ..+....+.+++++
T Consensus 96 ~~~d~~tg~~~~~~~~~~~~----------------------------------------------~~~~~~~~~v~vd~ 129 (343)
T 2qe8_A 96 VAWDTLNNQLSRVIYLPPPI----------------------------------------------TLSNSFVNDLAVDL 129 (343)
T ss_dssp EEEETTTTEEEEEEECCTTT----------------------------------------------SCTTCCCCEEEEET
T ss_pred EEEECCCCeEEEEEECChhh----------------------------------------------cccccccceEEEec
Confidence 99999888755433211000 00112334566665
Q ss_pred CC-CEEEEee---CCCeEEEEECCCCceeeecccc------------cCc--------------eeceEEEEECCCCCEE
Q 021399 157 LN-RTIISAG---EDAIVRIWDTETGKLLKESDKE------------TGH--------------KKTITSLAKAADGSHF 206 (313)
Q Consensus 157 ~~-~~i~t~~---~d~~i~lwd~~~~~~~~~~~~~------------~~h--------------~~~v~~~~~s~~~~~l 206 (313)
.+ ..+++-. .++.|.+||+.+++..+..... .+. ...+..++++|+|+.|
T Consensus 130 ~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~l 209 (343)
T 2qe8_A 130 IHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWL 209 (343)
T ss_dssp TTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEE
T ss_pred CCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEE
Confidence 43 3345544 5788999998877655433210 000 1235789999999988
Q ss_pred EEeeCCCcEEEEECCC-----Cc--------EEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeee
Q 021399 207 LTGSLDKSAKLWDART-----LE--------LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF 273 (313)
Q Consensus 207 ~s~s~dg~i~iwd~~~-----~~--------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (313)
+.+..++. ++|.+.+ +. .+...........+++++++. ++++.. ....+..+|...+++....
T Consensus 210 y~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~-l~va~~-~~~~V~~~d~~~G~~~~~~- 285 (343)
T 2qe8_A 210 YLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHN-IYVGDL-AHSAIGVITSADRAYKLLV- 285 (343)
T ss_dssp EEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCC-EEEEEG-GGTEEEEEETTTTEEEEEE-
T ss_pred EEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCC-EEEEcc-CCCeEEEEECCCCCEEEEE-
Confidence 88877664 4554321 10 011111122456788888865 444432 2334555554223221111
Q ss_pred ehhhhhhhccccccccceeEEEECCCCCee
Q 021399 274 DKILQEEIGGVKGHFGPINALAFNPDGKRY 303 (313)
Q Consensus 274 ~~~~~~~~~~~~~h~~~V~~~~fspdgk~~ 303 (313)
. . .+.....+++|.|||+.+
T Consensus 286 ~---------~-~~~~~p~~va~~~~g~l~ 305 (343)
T 2qe8_A 286 T---------D-EKLSWTDSFNFGSDGYLY 305 (343)
T ss_dssp E---------C-GGGSCEEEEEECTTSCEE
T ss_pred E---------C-CceecCCeeEECCCCcEE
Confidence 0 0 123467899999998753
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.24 E-value=1.7e-08 Score=88.16 Aligned_cols=223 Identities=11% Similarity=0.041 Sum_probs=137.2
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCC--cEEEEECCCCeEE
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQL 87 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~--~v~vWd~~~~~~~ 87 (313)
...+..++|+++|+++++...++.|++||.+++........... .. ++|+++++.++.+..++ .|.+|+..++...
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee
Confidence 34678999999999888888889999999988876655544332 23 89999999888888766 7888887655432
Q ss_pred EEe----c-CCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE----ecCCCCce--EEEEEc
Q 021399 88 FTF----N-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI----LKGPQGRI--NRAVWG 155 (313)
Q Consensus 88 ~~~----~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i--~~~~~~ 155 (313)
... . .......+.+.+ ++.+.+...+. .+..+.. . ....... ..++...- ..++++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~--------~I~~~d~--~--~~~~~~~~~~~~~g~~~~~P~~~ia~~ 275 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNK--------NFGRFNV--K--TQEVTLIKQLELSGSLGTNPGPYLIYY 275 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTC--------EEEEEET--T--TCCEEEEEECCCCSCCCCSSCCEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCC--------cEEEEEC--C--CCCEEEEecccccCCCCCCccccEEEe
Confidence 222 2 223445667777 44444422111 1111110 0 0111111 11222212 288999
Q ss_pred cC-CCEEEEeeCCCeEEEEECCCCceeeeccccc---C---------ceeceEEEEECCCCCEEEEee-CCCcEEEEECC
Q 021399 156 PL-NRTIISAGEDAIVRIWDTETGKLLKESDKET---G---------HKKTITSLAKAADGSHFLTGS-LDKSAKLWDAR 221 (313)
Q Consensus 156 ~~-~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~---~---------h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~ 221 (313)
|+ +..+++-..++.|+.|+.... +..+.... + .-.....++++++|+.+++-+ .++.|+.||+.
T Consensus 276 p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~ 353 (409)
T 3hrp_A 276 FVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL 353 (409)
T ss_dssp TTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred CCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence 95 666666677889999997643 22221100 1 013478899999999888887 88999999987
Q ss_pred CCcEEEEEecC----------------CceeEEEeccCCCEEEEc
Q 021399 222 TLELIKTYVTE----------------RPVNAVTMSPLLDHVVLG 250 (313)
Q Consensus 222 ~~~~~~~~~~~----------------~~~~~~~~~p~~~~~~~~ 250 (313)
+++. .++... .....++++|+ ..++++
T Consensus 354 ~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVa 396 (409)
T 3hrp_A 354 DGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIA 396 (409)
T ss_dssp TTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEE
T ss_pred CCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEE
Confidence 7764 333221 23567788877 445554
No 213
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.23 E-value=2.5e-12 Score=111.10 Aligned_cols=206 Identities=14% Similarity=0.119 Sum_probs=108.4
Q ss_pred CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEE
Q 021399 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVD 100 (313)
Q Consensus 21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~ 100 (313)
++.++++++.|+.|+.||.++|+.+.+++. +.+.+..+..+++.+++++.|+.++.||..+++.++......+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~---- 81 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE---- 81 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc----
Confidence 578999999999999999999999988887 55555555667778888899999999999887654433211000
Q ss_pred eecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCce
Q 021399 101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~ 180 (313)
.. ...++ +. .+..+++++.|+.|+.||.++++.
T Consensus 82 --------------------~~----------------------~~sp~----~~-~~~~v~~g~~dg~v~a~D~~tG~~ 114 (369)
T 2hz6_A 82 --------------------LV----------------------QASPC----RS-SDGILYMGKKQDIWYVIDLLTGEK 114 (369)
T ss_dssp --------------------HH----------------------TTCSC----C------CCCCEEEEEEEEECCC----
T ss_pred --------------------cc----------------------ccCce----Ee-cCCEEEEEeCCCEEEEEECCCCcE
Confidence 00 00000 00 123466788899999999999987
Q ss_pred eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCC---CEEEEcccccCce
Q 021399 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL---DHVVLGGGQDASA 257 (313)
Q Consensus 181 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~ 257 (313)
+-++.. +. ...++|++..+++++.|+.|+.||.++++.+..+.... ....++.++. +.++++. ..+.
T Consensus 115 ~w~~~~---~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~--~dg~ 184 (369)
T 2hz6_A 115 QQTLSS---AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSN--GDGL 184 (369)
T ss_dssp -------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEE--TSCE
T ss_pred EEEecC---CC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEEC--CCCE
Confidence 654431 11 13445688899999999999999999998765543211 1122222221 3444432 2344
Q ss_pred eEeeccCCCceeeeeeehhhhhhhccccccccce-eEEEECCCCCe
Q 021399 258 VTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPI-NALAFNPDGKR 302 (313)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~~~fspdgk~ 302 (313)
++.+|.+.++.. |. .. ..+++ ....+++||..
T Consensus 185 v~a~d~~tG~~~---W~---------~~-~~~pv~~~~~~~~dg~~ 217 (369)
T 2hz6_A 185 VVTVDSESGDVL---WI---------QN-YASPVVAFYVWQREGLR 217 (369)
T ss_dssp EEEECTTTCCEE---EE---------EE-CSSCEEEEEECTTSSCE
T ss_pred EEEEECCCCcEE---EE---------ec-CCCceEEEEEecCCceE
Confidence 666666655432 22 11 23344 34567778764
No 214
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=99.20 E-value=2.7e-08 Score=80.92 Aligned_cols=188 Identities=11% Similarity=0.035 Sum_probs=127.1
Q ss_pred ceeEEEEccCCCEEEEeeC--CCCeEEEeCCCCcEEEEecCC-CCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399 12 PLTYLKYNKDGDLLFSCAK--DHTPTVWFADNGERLGTYRGH-NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLF 88 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~--d~~i~iw~~~~~~~~~~~~~H-~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~ 88 (313)
....+.|++|+.++++.+. ++.|++.|.++++.+.++.-- ......+++. .+++.++.-.++.+.++|..+.+.+.
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~ 100 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIK 100 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEE
Confidence 4678999998765555543 589999999999998876521 1222345554 23455555678999999999887665
Q ss_pred EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCC
Q 021399 89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168 (313)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~ 168 (313)
.+....+ .+ ..++++++.++.+..++
T Consensus 101 ~i~~g~~--------------------------------------------------~g----~glt~Dg~~l~vs~gs~ 126 (266)
T 2iwa_A 101 NFTHQMK--------------------------------------------------DG----WGLATDGKILYGSDGTS 126 (266)
T ss_dssp EEECCSS--------------------------------------------------SC----CEEEECSSSEEEECSSS
T ss_pred EEECCCC--------------------------------------------------Ce----EEEEECCCEEEEECCCC
Confidence 4432100 00 01233444455556788
Q ss_pred eEEEEECCCCceeeecccccC-ce-eceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC--------------
Q 021399 169 IVRIWDTETGKLLKESDKETG-HK-KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-------------- 232 (313)
Q Consensus 169 ~i~lwd~~~~~~~~~~~~~~~-h~-~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------- 232 (313)
.|.++|..+.+.+..+..... .. ..++.+.+. +|...+....++.|.+.|+++++.+..+...
T Consensus 127 ~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~ 205 (266)
T 2iwa_A 127 ILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDI 205 (266)
T ss_dssp EEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTC
T ss_pred eEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccccccccc
Confidence 999999999887766543211 11 136677777 7755555556889999999999999888642
Q ss_pred CceeEEEeccCCCEEEEcccccC
Q 021399 233 RPVNAVTMSPLLDHVVLGGGQDA 255 (313)
Q Consensus 233 ~~~~~~~~~p~~~~~~~~~~~~~ 255 (313)
...+.++++|+++.++++++...
T Consensus 206 ~v~nGIa~~~~~~~lfVTgk~~~ 228 (266)
T 2iwa_A 206 DVLNGIAWDQENKRIFVTGKLWP 228 (266)
T ss_dssp CCEEEEEEETTTTEEEEEETTCS
T ss_pred CceEEEEEcCCCCEEEEECCCCC
Confidence 24589999999999999876554
No 215
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.18 E-value=9.7e-09 Score=85.98 Aligned_cols=203 Identities=9% Similarity=0.027 Sum_probs=122.9
Q ss_pred cccceeEEEEccC-CCEEEEeeCCCCeEEEeCCCCcEEEE-ecC----CCCceEEEEECCCCCeEEEeeCC---------
Q 021399 9 HERPLTYLKYNKD-GDLLFSCAKDHTPTVWFADNGERLGT-YRG----HNGAVWCCDVSRDSMTLITGSAD--------- 73 (313)
Q Consensus 9 h~~~v~~~~fs~~-g~~l~s~s~d~~i~iw~~~~~~~~~~-~~~----H~~~V~~~~~~~~~~~l~s~s~D--------- 73 (313)
+...+.++.++++ |.++++.. +..|.+||.+ ++.... ... +...+.+++++++|++.++...+
T Consensus 69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 4567889999999 76566544 4478889988 665433 221 12357899999999888776655
Q ss_pred ------CcEEEEECCCCeEEEEecCCCCeeEEEee----cCCeEE-EEECCCceeccccceeeeeeeCCCCCCCceEEEe
Q 021399 74 ------QTAKLWNVETGAQLFTFNFDSPARSVDFA----VGDKLA-VITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142 (313)
Q Consensus 74 ------~~v~vWd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (313)
+.|..||.. ++.............+.+. +++..+ +..... ..+..++...............+
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~-----~~i~~~~~~~~g~~~~~~~~~~~ 220 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPT-----KKLWSYDIKGPAKIENKKVWGHI 220 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTT-----TEEEEEEEEETTEEEEEEEEEEC
T ss_pred cccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCC-----CeEEEEECCCCCccccceEEEEC
Confidence 567777765 5443332222234566677 666433 332211 11111111100000000011222
Q ss_pred cCCC-CceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEE-EeeCCCcEEEEEC
Q 021399 143 KGPQ-GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFL-TGSLDKSAKLWDA 220 (313)
Q Consensus 143 ~~~~-~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~-s~s~dg~i~iwd~ 220 (313)
..+. .....++++++++.+++...++.|.+||..+++.+..+. .+...+.+++++++++.|. +...++.|..|++
T Consensus 221 ~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 221 PGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR---CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW 297 (314)
T ss_dssp CCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE---CSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred CCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe---CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence 3333 456788999999988887788899999998666554432 2346789999999999554 5555688999987
Q ss_pred CC
Q 021399 221 RT 222 (313)
Q Consensus 221 ~~ 222 (313)
..
T Consensus 298 ~~ 299 (314)
T 1pjx_A 298 QR 299 (314)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.16 E-value=4.5e-09 Score=90.09 Aligned_cols=221 Identities=9% Similarity=-0.070 Sum_probs=131.1
Q ss_pred EEEEccCCCEEEEee----------CCCCeEEEeCCCCcEEEEecCCC-------CceEEEEECCCCCeEEEeeC--CCc
Q 021399 15 YLKYNKDGDLLFSCA----------KDHTPTVWFADNGERLGTYRGHN-------GAVWCCDVSRDSMTLITGSA--DQT 75 (313)
Q Consensus 15 ~~~fs~~g~~l~s~s----------~d~~i~iw~~~~~~~~~~~~~H~-------~~V~~~~~~~~~~~l~s~s~--D~~ 75 (313)
.+.|+|||++++.+. .++.|.+||..+++.+.++.-+. ..-..++++|||++++.+.. +..
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~ 148 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA 148 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence 699999999999886 36889999999999999886431 12346899999998888764 467
Q ss_pred EEE--EECCCCeEEEEecCCC--------CeeEEEeecCCeEEEEECCC----ceeccccc-eeeeeee----CCCC---
Q 021399 76 AKL--WNVETGAQLFTFNFDS--------PARSVDFAVGDKLAVITTDP----FMELNSAI-HVKRIAR----DPAD--- 133 (313)
Q Consensus 76 v~v--Wd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~----~~~~--- 133 (313)
+.+ +|+.+ +..+.... ....+.+++++++.++..+. ........ ....+.. .+..
T Consensus 149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~ 225 (368)
T 1mda_H 149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML 225 (368)
T ss_dssp EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence 888 99876 22222111 01112233344433333221 00000000 0000000 0000
Q ss_pred ----CCCceEEEecCCC---------------------CceEEEEEccCCCEEEEeeC---------CCeEEEEECCCCc
Q 021399 134 ----QGGESVLILKGPQ---------------------GRINRAVWGPLNRTIISAGE---------DAIVRIWDTETGK 179 (313)
Q Consensus 134 ----~~~~~~~~~~~~~---------------------~~i~~~~~~~~~~~i~t~~~---------d~~i~lwd~~~~~ 179 (313)
...-.+....+.. .....+.++|+++++..+.. ++.+.++|+.+.+
T Consensus 226 ~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~ 305 (368)
T 1mda_H 226 VWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ 305 (368)
T ss_dssp EECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC
T ss_pred EEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe
Confidence 0000000000000 00111578999887776532 2356699999998
Q ss_pred eeeecccccCceeceEEEEECCCCC-EEEEee-CCCcEEEEECCCCcEEEEEecCCceeEEEecc
Q 021399 180 LLKESDKETGHKKTITSLAKAADGS-HFLTGS-LDKSAKLWDARTLELIKTYVTERPVNAVTMSP 242 (313)
Q Consensus 180 ~~~~~~~~~~h~~~v~~~~~s~~~~-~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p 242 (313)
.+.++.. ......+++++||+ .+++.. .++.|.++|+++++.+.++........+++++
T Consensus 306 vv~~i~v----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~~i~~~~ 366 (368)
T 1mda_H 306 TSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSVQN 366 (368)
T ss_dssp EEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEECCC
T ss_pred EEEEEEC----CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCCEEEeec
Confidence 8876642 23688999999998 466666 59999999999999999987665556666543
No 217
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=99.13 E-value=3e-08 Score=79.80 Aligned_cols=184 Identities=14% Similarity=0.107 Sum_probs=125.4
Q ss_pred ceeEEEEccCCCEEEEeeCCC--CeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEE
Q 021399 12 PLTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLF 88 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~--~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~ 88 (313)
....|.|+ ++.++.|++.+| .|+++|+++++.+.++.-.. ..+...+.++++ +.+..-.++.+.++|..+.+.+.
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEE
Confidence 45789999 777888888876 89999999999988876432 333322223344 44444568999999999888765
Q ss_pred EecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCC
Q 021399 89 TFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDA 168 (313)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~ 168 (313)
.+...... + .+.+++..++.+..++
T Consensus 122 ti~~~~eG----------------------------~---------------------------glt~dg~~L~~SdGs~ 146 (262)
T 3nol_A 122 SFNYDGEG----------------------------W---------------------------GLTHNDQYLIMSDGTP 146 (262)
T ss_dssp EEECSSCC----------------------------C---------------------------CEEECSSCEEECCSSS
T ss_pred EEECCCCc----------------------------e---------------------------EEecCCCEEEEECCCC
Confidence 54321100 0 0112344455555678
Q ss_pred eEEEEECCCCceeeeccccc-Cce-eceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC-------------C
Q 021399 169 IVRIWDTETGKLLKESDKET-GHK-KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE-------------R 233 (313)
Q Consensus 169 ~i~lwd~~~~~~~~~~~~~~-~h~-~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------------~ 233 (313)
.|.++|..+.+.+.++.... ++. ..++.+.+. +|...+..-.++.|.+.|.++++.+..+... .
T Consensus 147 ~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~ 225 (262)
T 3nol_A 147 VLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPID 225 (262)
T ss_dssp EEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCC
T ss_pred eEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCC
Confidence 89999999988877654321 122 234566775 6765555556889999999999999888642 2
Q ss_pred ceeEEEeccCCCEEEEcccc
Q 021399 234 PVNAVTMSPLLDHVVLGGGQ 253 (313)
Q Consensus 234 ~~~~~~~~p~~~~~~~~~~~ 253 (313)
..+.+|++|..+.++++|..
T Consensus 226 vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 226 VLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp CEEEEEEETTTTEEEEEETT
T ss_pred ceEEEEEcCCCCEEEEECCC
Confidence 35899999999999998753
No 218
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.12 E-value=7e-07 Score=73.84 Aligned_cols=222 Identities=10% Similarity=0.001 Sum_probs=141.6
Q ss_pred cccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEE-EEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399 9 HERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (313)
Q Consensus 9 h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~-~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~ 87 (313)
+...+..++++++|...++...++.|..+|.+ ++.. ..+......+.++++.++++++++...++.|..||.. ++..
T Consensus 60 ~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~ 137 (300)
T 2qc5_A 60 PDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY 137 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE
T ss_pred CCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE
Confidence 34568899999999988877778889999987 5543 2233344678999999999988887778899999987 5544
Q ss_pred EE-ec-CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceE-EEecCCCCceEEEEEccCCCEEEEe
Q 021399 88 FT-FN-FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESV-LILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 88 ~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
.. .. ....+..+.+.+++.+.+.....- .+..+ +. .+... .....+...+..+.+.++++.+++.
T Consensus 138 ~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~-------~i~~~--~~---~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~ 205 (300)
T 2qc5_A 138 EYDLPNKGSYPAFITLGSDNALWFTENQNN-------SIGRI--TN---TGKLEEYPLPTNAAAPVGITSGNDGALWFVE 205 (300)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEETTTT-------EEEEE--CT---TCCEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred EccCCCCCCCceeEEECCCCCEEEEecCCC-------eEEEE--CC---CCcEEEeeCCCCCCCcceEEECCCCCEEEEc
Confidence 22 22 123456666767666555443110 01111 00 11111 1122334567788899988877776
Q ss_pred eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec---CCceeEEEec
Q 021399 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT---ERPVNAVTMS 241 (313)
Q Consensus 165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~~~~~~~ 241 (313)
...+.|.+||. +++... ... ..+...+.+++++++|...++...++.|..||. +++.. .+.. ...+.++++.
T Consensus 206 ~~~~~i~~~~~-~g~~~~-~~~-~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~ 280 (300)
T 2qc5_A 206 IMGNKIGRITT-TGEISE-YDI-PTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFG 280 (300)
T ss_dssp TTTTEEEEECT-TCCEEE-EEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEEC
T ss_pred cCCCEEEEEcC-CCcEEE-EEC-CCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeC
Confidence 66788999998 444332 111 123456889999999997777766789999998 44432 3321 2346777777
Q ss_pred cCCCEEEEc
Q 021399 242 PLLDHVVLG 250 (313)
Q Consensus 242 p~~~~~~~~ 250 (313)
+++. ++++
T Consensus 281 ~~g~-l~v~ 288 (300)
T 2qc5_A 281 KDGS-VWFA 288 (300)
T ss_dssp TTSC-EEEE
T ss_pred CCCC-EEEE
Confidence 7765 3443
No 219
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=99.12 E-value=1.8e-08 Score=81.08 Aligned_cols=181 Identities=10% Similarity=0.068 Sum_probs=125.1
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEE--EEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWC--CDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~--~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~ 89 (313)
....|.|+ ++.++++.+.+|.|+++|+++++.+.++ - ....+. +++.. +++.+..-.++.+.++|..+.+.+..
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASDG-ERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEECS-SCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEeC-CEEEEEEccCCEEEEEECCcCcEEEE
Confidence 45688998 4677888888899999999999987776 2 223333 45432 34555556789999999999887765
Q ss_pred ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe
Q 021399 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (313)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~ 169 (313)
+...... .. +.+++..++.+..++.
T Consensus 132 i~~~~eG-----------------------------------------------------wG--Lt~Dg~~L~vSdGs~~ 156 (268)
T 3nok_A 132 TRYSGEG-----------------------------------------------------WG--LCYWNGKLVRSDGGTM 156 (268)
T ss_dssp EECSSCC-----------------------------------------------------CC--EEEETTEEEEECSSSE
T ss_pred EeCCCce-----------------------------------------------------eE--EecCCCEEEEECCCCE
Confidence 5321100 00 1123455665666899
Q ss_pred EEEEECCCCceeeecccccCce--eceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC--------------C
Q 021399 170 VRIWDTETGKLLKESDKETGHK--KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE--------------R 233 (313)
Q Consensus 170 i~lwd~~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--------------~ 233 (313)
|.++|..+.+.++++.....-. ..++.+.|. +|...+..-.++.|.+.|.++++.+..+... .
T Consensus 157 l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~ 235 (268)
T 3nok_A 157 LTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEA 235 (268)
T ss_dssp EEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTC
T ss_pred EEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCC
Confidence 9999999988877664322111 134667776 7765555556889999999999999887532 2
Q ss_pred ceeEEEeccCCCEEEEccc
Q 021399 234 PVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 234 ~~~~~~~~p~~~~~~~~~~ 252 (313)
..+.+|++|..+.++++|.
T Consensus 236 vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 236 VLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp CEEEEEECTTTCCEEEEET
T ss_pred ceEEEEEcCCCCEEEEeCC
Confidence 4689999999999998875
No 220
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.11 E-value=5.4e-08 Score=84.81 Aligned_cols=269 Identities=12% Similarity=0.019 Sum_probs=154.9
Q ss_pred cCCCEEEEeeCC-----CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee----------CCCcEEEEECCCC
Q 021399 20 KDGDLLFSCAKD-----HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNVETG 84 (313)
Q Consensus 20 ~~g~~l~s~s~d-----~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s----------~D~~v~vWd~~~~ 84 (313)
+++++++..... +.|.+.|.++.+.+.++.--..+ .++++||++.++.+. .++.|.++|..+.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~ 159 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF 159 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence 567777766553 68999999999999988755555 799999999877765 4679999999999
Q ss_pred eEEEEecCC--------CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 85 AQLFTFNFD--------SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 85 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
+.+..+... .....+.++++++.+++..... ...+.+.+. ...+.+..+.-... ....|
T Consensus 160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~---~~~VsVID~------~t~kvv~~I~v~g~----~~~~p 226 (426)
T 3c75_H 160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP---APAVGVVDL------EGKTFDRMLDVPDC----YHIFP 226 (426)
T ss_dssp CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSS---SCEEEEEET------TTTEEEEEEECCSE----EEEEE
T ss_pred cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCC---CCeEEEEEC------CCCeEEEEEEcCCc----eeecc
Confidence 887665432 2345677888777666543100 000111111 11122222221110 11223
Q ss_pred C-CCEEEEeeCCCeEEEEECCCCceeeecc--cccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE--EEEec
Q 021399 157 L-NRTIISAGEDAIVRIWDTETGKLLKESD--KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI--KTYVT 231 (313)
Q Consensus 157 ~-~~~i~t~~~d~~i~lwd~~~~~~~~~~~--~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~ 231 (313)
. .+.+++.+.||.+.+.+..+++...... ...+.......+.+.+++..++..+..+.+.+.|+...... ..+..
T Consensus 227 ~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~ 306 (426)
T 3c75_H 227 ASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEA 306 (426)
T ss_dssp EETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEES
T ss_pred CCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeee
Confidence 2 2455666778888888875554332110 00011111123467888888777778899999998765432 11110
Q ss_pred -----------CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCC
Q 021399 232 -----------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300 (313)
Q Consensus 232 -----------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg 300 (313)
+.....++++|+++.++++-..... +-++.+..++..+|..+.+.+..+.. ....+.++|+|||
T Consensus 307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~----gthk~~s~~VsVID~~T~kvv~~I~v-g~~P~gia~spDg 381 (426)
T 3c75_H 307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDE----WKHKAASRFVVVLNAETGERINKIEL-GHEIDSINVSQDA 381 (426)
T ss_dssp SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCT----TCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECCSS
T ss_pred ccccccccccccCCceeeEEcCCCCEEEEEeccccc----ccccCCCCEEEEEECCCCeEEEEEEC-CCCcCeEEEccCC
Confidence 1112236888888877775321000 00111122455666666666555432 3357999999999
Q ss_pred CeeEEEEE
Q 021399 301 KRYGFLLL 308 (313)
Q Consensus 301 k~~~~~~~ 308 (313)
|.+.|...
T Consensus 382 ~~~lyv~n 389 (426)
T 3c75_H 382 EPLLYALS 389 (426)
T ss_dssp SCEEEEEE
T ss_pred CEEEEEEc
Confidence 96556544
No 221
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.10 E-value=1.9e-08 Score=94.67 Aligned_cols=201 Identities=13% Similarity=0.037 Sum_probs=120.4
Q ss_pred eEEEEccCCCEEEEeeCCCC--------------eEEEeCCCCc----EEEEecCCCCceEEEEECCCCCeEEEeeCCC-
Q 021399 14 TYLKYNKDGDLLFSCAKDHT--------------PTVWFADNGE----RLGTYRGHNGAVWCCDVSRDSMTLITGSADQ- 74 (313)
Q Consensus 14 ~~~~fs~~g~~l~s~s~d~~--------------i~iw~~~~~~----~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~- 74 (313)
..++|+|| +.|+.++.|+. |++|++.++. .+.....|...+..+.|+|||+.++..+.++
T Consensus 212 ~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~ 290 (741)
T 1yr2_A 212 SGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGT 290 (741)
T ss_dssp CCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTT
T ss_pred ccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccC
Confidence 57899999 99999887664 8889987765 3333334445688999999999887766544
Q ss_pred ----cEEEEECCCC--e-EEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCC
Q 021399 75 ----TAKLWNVETG--A-QLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQG 147 (313)
Q Consensus 75 ----~v~vWd~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (313)
.|.+||+.++ + ..................++.+++.+.... ...++..+... .........+..+..
T Consensus 291 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~----~~~~l~~~d~~--~~~~~~~~l~~~~~~ 364 (741)
T 1yr2_A 291 DPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGA----PLKKIVRVDLS--GSTPRFDTVVPESKD 364 (741)
T ss_dssp CSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTC----TTCEEEEEECS--SSSCEEEEEECCCSS
T ss_pred CCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCC----CCCEEEEEeCC--CCccccEEEecCCCC
Confidence 7999999876 3 232222222222222333555555443210 01111111111 000122233344444
Q ss_pred ceEEEEEccCCCEEEEeeCCCeEEEEECC-CCceeeecccccCceeceEEEEECCCCCEEE----EeeCCCcEEEEECCC
Q 021399 148 RINRAVWGPLNRTIISAGEDAIVRIWDTE-TGKLLKESDKETGHKKTITSLAKAADGSHFL----TGSLDKSAKLWDART 222 (313)
Q Consensus 148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~-~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~----s~s~dg~i~iwd~~~ 222 (313)
.+..+.+. .+..+++...|+..+||... +++..+.+.. .+...+..++++|+++.++ +....++|.+||+.+
T Consensus 365 ~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 441 (741)
T 1yr2_A 365 NLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSL--PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT 441 (741)
T ss_dssp EEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBC--SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred eEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccC--CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence 56666776 55677888888887777543 3444444431 2356788899999988666 233457899999988
Q ss_pred Cc
Q 021399 223 LE 224 (313)
Q Consensus 223 ~~ 224 (313)
++
T Consensus 442 g~ 443 (741)
T 1yr2_A 442 AK 443 (741)
T ss_dssp TE
T ss_pred Cc
Confidence 76
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.10 E-value=2.6e-08 Score=85.34 Aligned_cols=249 Identities=9% Similarity=0.019 Sum_probs=142.9
Q ss_pred CeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee----------CCCcEEEEECCCCeEEEEecCC--------C
Q 021399 33 TPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS----------ADQTAKLWNVETGAQLFTFNFD--------S 94 (313)
Q Consensus 33 ~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s----------~D~~v~vWd~~~~~~~~~~~~~--------~ 94 (313)
.|.+.|.++++.+.++..-..+ .+.++||++.++.+. .+++|.+||+.+++.+..+... .
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~ 124 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGP 124 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSC
T ss_pred eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCC
Confidence 7789999999999998755555 699999999887775 4789999999999988776543 2
Q ss_pred CeeEEEeecCCeEEEEEC-C--Cceec---cccceeeeeeeCC--------------CCCCCceE-EEecCC---CCceE
Q 021399 95 PARSVDFAVGDKLAVITT-D--PFMEL---NSAIHVKRIARDP--------------ADQGGESV-LILKGP---QGRIN 150 (313)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~-~--~~~~~---~~~~~~~~~~~~~--------------~~~~~~~~-~~~~~~---~~~i~ 150 (313)
....+.++|+++.+++.. . ....+ +... ...+.... ....+..+ ...... .+.+.
T Consensus 125 ~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~ 203 (368)
T 1mda_H 125 RVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVG 203 (368)
T ss_dssp CTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECC
T ss_pred CcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEE
Confidence 356778888776655543 1 11111 1111 11111000 00000000 011100 00000
Q ss_pred ------------EEEEccCCCEEEEeeCCCeEEEEECCCCc--eeeecccc------cC-ceeceEEEEECCCCCEEEEe
Q 021399 151 ------------RAVWGPLNRTIISAGEDAIVRIWDTETGK--LLKESDKE------TG-HKKTITSLAKAADGSHFLTG 209 (313)
Q Consensus 151 ------------~~~~~~~~~~i~t~~~d~~i~lwd~~~~~--~~~~~~~~------~~-h~~~v~~~~~s~~~~~l~s~ 209 (313)
-.. .+.+..++..+. +.+.+.|..... .+..+... .+ .......+++++|++.++.+
T Consensus 204 ~~~t~~i~vg~~P~~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~ 281 (368)
T 1mda_H 204 AQCTGAQNCSSQAAQ-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL 281 (368)
T ss_dssp CCSCTTSCBCSCCEE-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred EEeeeeeeCCCCccc-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence 001 344444555555 788888886432 22221110 00 01111226799999988765
Q ss_pred eC---------CCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhh
Q 021399 210 SL---------DKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEE 280 (313)
Q Consensus 210 s~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (313)
.. ++.+.++|+++++.+..+........++++|++..++++.....+.+ ..+|..+.+.
T Consensus 282 ~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~V------------sVID~~t~kv 349 (368)
T 1mda_H 282 TVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVL------------DIYDAASDQD 349 (368)
T ss_dssp EEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEE------------EEEESSSCEE
T ss_pred eccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeE------------EEEECCCCcE
Confidence 43 23566999999999998876667899999999987766654222333 3455555555
Q ss_pred hccccccccceeEEEECCC
Q 021399 281 IGGVKGHFGPINALAFNPD 299 (313)
Q Consensus 281 ~~~~~~h~~~V~~~~fspd 299 (313)
+..+... ..-+.++|.++
T Consensus 350 v~~I~vg-~~P~~i~~~~~ 367 (368)
T 1mda_H 350 QSSVELD-KGPESLSVQNE 367 (368)
T ss_dssp EEECCCC-SCCCEEECCCC
T ss_pred EEEEECC-CCCCEEEeecC
Confidence 4444432 33466666653
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.09 E-value=3e-08 Score=92.17 Aligned_cols=267 Identities=14% Similarity=0.112 Sum_probs=147.2
Q ss_pred CCCEEEEeeCCCCeEEEeCCCCcEEEEecCC-C----CceEE-EEECCCCCeEEEeeC------CCcEEEEECCCCeEEE
Q 021399 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGH-N----GAVWC-CDVSRDSMTLITGSA------DQTAKLWNVETGAQLF 88 (313)
Q Consensus 21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H-~----~~V~~-~~~~~~~~~l~s~s~------D~~v~vWd~~~~~~~~ 88 (313)
++..|+.++.|+.+..+|.++|+.+.++..+ . ..+.+ ..+ .++ .++.++. ++.|+.+|..+++.++
T Consensus 127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~-~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKG-KVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECC-EEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 4668888999999999999999999888765 2 12211 111 134 4444443 7999999999999998
Q ss_pred EecCCCCe---------------------------------eEEEeecCCeEEEEECCCceeccccc---------ee-e
Q 021399 89 TFNFDSPA---------------------------------RSVDFAVGDKLAVITTDPFMELNSAI---------HV-K 125 (313)
Q Consensus 89 ~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~ 125 (313)
.+....+. ..+.+.+....+.+....-....... .. .
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 77542211 12334443333333322100000000 00 0
Q ss_pred eeeeCCCCCCCceEEEecC--CC-------CceEEEEEccCC---CEEEEeeCCCeEEEEECCCCceeeeccccc-C---
Q 021399 126 RIARDPADQGGESVLILKG--PQ-------GRINRAVWGPLN---RTIISAGEDAIVRIWDTETGKLLKESDKET-G--- 189 (313)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~--~~-------~~i~~~~~~~~~---~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~-~--- 189 (313)
-+..+. .+++.+-.++. |. .....+....+| ..++.++.+|.++++|..+++.+-...... .
T Consensus 285 v~AlD~--~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 285 IVALDP--DTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp EEEECT--TTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEC--CCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 011111 11222222211 10 111112222345 578889999999999999998865432110 0
Q ss_pred ----ceece------------------------EEEEECCCCCEEEEeeCC-----------------------------
Q 021399 190 ----HKKTI------------------------TSLAKAADGSHFLTGSLD----------------------------- 212 (313)
Q Consensus 190 ----h~~~v------------------------~~~~~s~~~~~l~s~s~d----------------------------- 212 (313)
....+ ..++++|++..+++...+
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 00000 146788888887775432
Q ss_pred --------------CcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhh
Q 021399 213 --------------KSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ 278 (313)
Q Consensus 213 --------------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (313)
|.|..||+++++.+-++....+.....+...++.++++. .+..++.+|.++++.
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~--~dg~l~a~D~~tG~~---------- 510 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGT--ADGRLVAYHAATGEK---------- 510 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEEC--TTSEEEEEETTTCCE----------
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEEC--CCCcEEEEECCCCce----------
Confidence 789999999999988877665555555666677666642 234455555555544
Q ss_pred hhhcccc-ccccceeEEEECCCCCeeEE
Q 021399 279 EEIGGVK-GHFGPINALAFNPDGKRYGF 305 (313)
Q Consensus 279 ~~~~~~~-~h~~~V~~~~fspdgk~~~~ 305 (313)
++.+. ++...-.-+.|++|||++..
T Consensus 511 --lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 511 --LWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp --EEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred --eeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 33322 12222234566788887543
No 224
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.07 E-value=1.8e-07 Score=77.92 Aligned_cols=223 Identities=13% Similarity=0.077 Sum_probs=129.8
Q ss_pred CCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeee
Q 021399 51 HNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR 129 (313)
Q Consensus 51 H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (313)
+..--.+..|+++ +.++++...++.|..||..+++. ..+.....+..+.+.+++.+++........++..
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~-------- 81 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWK-------- 81 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETT--------
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECC--------
Confidence 3334567888885 45667767789999999988765 3344456677888888777665543222111110
Q ss_pred CCCCCCCce--EEEec-C-CCCceEEEEEccCCCEEEEeeC-----------CCeEEEEECCCCceeeecccccCceece
Q 021399 130 DPADQGGES--VLILK-G-PQGRINRAVWGPLNRTIISAGE-----------DAIVRIWDTETGKLLKESDKETGHKKTI 194 (313)
Q Consensus 130 ~~~~~~~~~--~~~~~-~-~~~~i~~~~~~~~~~~i~t~~~-----------d~~i~lwd~~~~~~~~~~~~~~~h~~~v 194 (313)
.+.. +.... + ....++.+.++|+|+.+++... .+.|..+|.. ++.. .+. .+....
T Consensus 82 -----~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~-~~~---~~~~~p 151 (297)
T 3g4e_A 82 -----EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVK-KYF---DQVDIS 151 (297)
T ss_dssp -----TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEE-EEE---EEESBE
T ss_pred -----CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEE-EEe---eccccc
Confidence 0111 11111 1 2345788999999997665422 2345555543 3322 211 123456
Q ss_pred EEEEECCCCCEE-EEeeCCCcEEEEEC--CCCcEE--EEEe----cCCceeEEEeccCCCEEEEcccccCceeEeeccCC
Q 021399 195 TSLAKAADGSHF-LTGSLDKSAKLWDA--RTLELI--KTYV----TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA 265 (313)
Q Consensus 195 ~~~~~s~~~~~l-~s~s~dg~i~iwd~--~~~~~~--~~~~----~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 265 (313)
..++|+|+++.+ ++.+.++.|..||+ +++... +.+. .......+++.+++. +.++... +..+.
T Consensus 152 ngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~-~~~v~------ 223 (297)
T 3g4e_A 152 NGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYN-GGRVI------ 223 (297)
T ss_dssp EEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEET-TTEEE------
T ss_pred cceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcC-CCEEE------
Confidence 789999999866 55566789999987 455532 1121 123467788888875 4444221 22233
Q ss_pred CceeeeeeehhhhhhhccccccccceeEEEEC-CCCCeeEEE
Q 021399 266 GKFEAKFFDKILQEEIGGVKGHFGPINALAFN-PDGKRYGFL 306 (313)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fs-pdgk~~~~~ 306 (313)
.||..+++.+..+..+...+++++|. ||++.+-+-
T Consensus 224 ------~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt 259 (297)
T 3g4e_A 224 ------RLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVT 259 (297)
T ss_dssp ------EECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEE
T ss_pred ------EEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEE
Confidence 34444444444444455688999998 898876543
No 225
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=99.04 E-value=3e-07 Score=73.35 Aligned_cols=185 Identities=11% Similarity=0.060 Sum_probs=123.9
Q ss_pred cceeEEEEccCCCEEEEeeCCC--CeEEEeCCCCcEEEEecCCCCce-EEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTYRGHNGAV-WCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~--~i~iw~~~~~~~~~~~~~H~~~V-~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~ 87 (313)
...+.|.|++ +.++.|.+.+| .|+++|+++++.+.+..-..... ..+++. .+++.+..-.++.+.++|..+.+.+
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~ 98 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPR 98 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEE
Confidence 4567899986 66777777654 89999999999988775432211 223433 2445555567899999999998877
Q ss_pred EEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399 88 FTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (313)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d 167 (313)
..+...... ..+ .+++..++.+..+
T Consensus 99 ~ti~~~~~G-----------------------------------------------------wgl--t~dg~~L~vSdgs 123 (243)
T 3mbr_X 99 ARFRYPGEG-----------------------------------------------------WAL--TSDDSHLYMSDGT 123 (243)
T ss_dssp EEEECSSCC-----------------------------------------------------CEE--EECSSCEEEECSS
T ss_pred EEEeCCCCc-----------------------------------------------------eEE--eeCCCEEEEECCC
Confidence 655321100 001 1223445555568
Q ss_pred CeEEEEECCCCceeeecccccC-ce-eceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC-------------
Q 021399 168 AIVRIWDTETGKLLKESDKETG-HK-KTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTE------------- 232 (313)
Q Consensus 168 ~~i~lwd~~~~~~~~~~~~~~~-h~-~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------- 232 (313)
+.|.++|..+.+.++++..... .. ..++.+.+. +|...+..-.+..|.+.|.++++.+..+...
T Consensus 124 ~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~ 202 (243)
T 3mbr_X 124 AVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDST 202 (243)
T ss_dssp SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTT
T ss_pred CeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCc
Confidence 8999999999888776643211 11 234566665 6665555546789999999999999887521
Q ss_pred -CceeEEEeccCCCEEEEcccc
Q 021399 233 -RPVNAVTMSPLLDHVVLGGGQ 253 (313)
Q Consensus 233 -~~~~~~~~~p~~~~~~~~~~~ 253 (313)
...+.+|++|..+.++++|..
T Consensus 203 ~~vlNGIA~d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 203 NDVLNGIAFDAEHDRLFVTGKR 224 (243)
T ss_dssp SSCEEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEEcCCCCEEEEECCC
Confidence 246899999999999998753
No 226
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.03 E-value=1.2e-07 Score=88.35 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=49.3
Q ss_pred CCCEEEEeeCCCCeEEEeCCCCcEEEEecCC--CCceEEEEECC---CCCeEEEee-----CCCcEEEEECCCCeEEEEe
Q 021399 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGH--NGAVWCCDVSR---DSMTLITGS-----ADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H--~~~V~~~~~~~---~~~~l~s~s-----~D~~v~vWd~~~~~~~~~~ 90 (313)
++.+++.++.|+.+..+|.++|+.+..+... ......+..+| ++..++..+ .|+.|..||..+++.++.+
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 199 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF 199 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence 3568888999999999999999998877642 11111111122 454444333 3789999999999998876
Q ss_pred c
Q 021399 91 N 91 (313)
Q Consensus 91 ~ 91 (313)
.
T Consensus 200 ~ 200 (689)
T 1yiq_A 200 Y 200 (689)
T ss_dssp E
T ss_pred c
Confidence 5
No 227
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.99 E-value=7.2e-07 Score=75.36 Aligned_cols=217 Identities=13% Similarity=0.004 Sum_probs=125.0
Q ss_pred eEEEEECCCC-CeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCC
Q 021399 55 VWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD 133 (313)
Q Consensus 55 V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (313)
..+..|+|++ .++++...++.|..||+.+++.. .+.....+..+.+.+++.+++........++ ..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d-----------~~- 117 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDSKQLIASDDGLFLRD-----------TA- 117 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETTEEEEEETTEEEEEE-----------TT-
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCCeEEEEECCCEEEEE-----------CC-
Confidence 4567899974 46667667899999999887643 2334456777778888877766533211111 00
Q ss_pred CCCceEEEec----CCCCceEEEEEccCCCEEEEeeC------CCeEEEEECCCCceeeecccccCceeceEEEEECCCC
Q 021399 134 QGGESVLILK----GPQGRINRAVWGPLNRTIISAGE------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADG 203 (313)
Q Consensus 134 ~~~~~~~~~~----~~~~~i~~~~~~~~~~~i~t~~~------d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~ 203 (313)
.+....... .....++.+.++|+++.+++... .+.|..+| +++. ..+. .+......++|+|++
T Consensus 118 -~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~---~~~~~~~~i~~s~dg 190 (326)
T 2ghs_A 118 -TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLF---ADISIPNSICFSPDG 190 (326)
T ss_dssp -TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEE---EEESSEEEEEECTTS
T ss_pred -CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEee---CCCcccCCeEEcCCC
Confidence 111111111 11245788999999987665442 25666666 4433 2221 123356789999999
Q ss_pred CEEEE-eeCCCcEEEEECC--CC-cE-----EEEEe-cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeee
Q 021399 204 SHFLT-GSLDKSAKLWDAR--TL-EL-----IKTYV-TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF 273 (313)
Q Consensus 204 ~~l~s-~s~dg~i~iwd~~--~~-~~-----~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (313)
+.++. .+.++.|.+||++ ++ +. +..+. .......+++.+++...++..+ ...+..++..
T Consensus 191 ~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~--~~~v~~~d~~--------- 259 (326)
T 2ghs_A 191 TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG--EGAVDRYDTD--------- 259 (326)
T ss_dssp CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET--TTEEEEECTT---------
T ss_pred CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC--CCEEEEECCC---------
Confidence 87654 4557899999986 55 31 22221 1234567888887754333211 1223333431
Q ss_pred ehhhhhhhccccccccceeEEEEC-CCCCeeEEE
Q 021399 274 DKILQEEIGGVKGHFGPINALAFN-PDGKRYGFL 306 (313)
Q Consensus 274 ~~~~~~~~~~~~~h~~~V~~~~fs-pdgk~~~~~ 306 (313)
++.+..+..+...+++++|+ ||++.+-+.
T Consensus 260 ----g~~~~~i~~~~~~~~~~af~g~d~~~L~vt 289 (326)
T 2ghs_A 260 ----GNHIARYEVPGKQTTCPAFIGPDASRLLVT 289 (326)
T ss_dssp ----CCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred ----CCEEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence 22222233345578999998 998876443
No 228
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.97 E-value=3.4e-07 Score=79.41 Aligned_cols=195 Identities=12% Similarity=0.044 Sum_probs=120.0
Q ss_pred EEc--cCCCEEEEee-CCCCeEEEeCCCC----cEEEEec------C-CCCceEEEEECCCCCeEEEeeCC------CcE
Q 021399 17 KYN--KDGDLLFSCA-KDHTPTVWFADNG----ERLGTYR------G-HNGAVWCCDVSRDSMTLITGSAD------QTA 76 (313)
Q Consensus 17 ~fs--~~g~~l~s~s-~d~~i~iw~~~~~----~~~~~~~------~-H~~~V~~~~~~~~~~~l~s~s~D------~~v 76 (313)
.++ +++++|+..+ .+.+|.|.|+++. +..++++ . -...-..+...|+| +++++..+ +.+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 347 8888777654 5788999998755 6666663 0 11122345677999 77777666 678
Q ss_pred EEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEcc
Q 021399 77 KLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGP 156 (313)
Q Consensus 77 ~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 156 (313)
.+.|..+.+.+........ ....-+.+-|+|
T Consensus 167 ~vlD~~T~~v~~~~~~~~~-------------------------------------------------~~~~~Yd~~~~p 197 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRG-------------------------------------------------DQYLAYDFWWNL 197 (462)
T ss_dssp EEECTTTCCEEEECCSBCT-------------------------------------------------TCCCCCCEEEET
T ss_pred EEEECCCCeEEEEEccCCC-------------------------------------------------CccccceEEECC
Confidence 8888888776554432100 011122344566
Q ss_pred CCCEEEEee-------------------CCCeEEEEECCCCceeeecccccCceeceEEEEE--CCCCCEEEEee-----
Q 021399 157 LNRTIISAG-------------------EDAIVRIWDTETGKLLKESDKETGHKKTITSLAK--AADGSHFLTGS----- 210 (313)
Q Consensus 157 ~~~~i~t~~-------------------~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~--s~~~~~l~s~s----- 210 (313)
.++.+++.. .+.+|.+||+.+++.++++.... .......+.| +|+++++..++
T Consensus 198 ~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~-~g~~P~~i~f~~~Pdg~~aYV~~e~~~~ 276 (462)
T 2ece_A 198 PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE-ENRMALELRPLHDPTKLMGFINMVVSLK 276 (462)
T ss_dssp TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT-TEEEEEEEEECSSTTCCEEEEEEEEETT
T ss_pred CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC-CCCccceeEeeECCCCCEEEEEEeeecc
Confidence 666666653 46899999999887777654321 2234555555 99999988777
Q ss_pred -CCCcEEEEECCCCc--EEEEE--ec-----------------CCceeEEEeccCCCEEEEcccccCceeEeecc
Q 021399 211 -LDKSAKLWDARTLE--LIKTY--VT-----------------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDH 263 (313)
Q Consensus 211 -~dg~i~iwd~~~~~--~~~~~--~~-----------------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 263 (313)
.+++|.+|..+.++ ..+.+ .. ......+.++|++..++++.... +.+..+|.
T Consensus 277 ~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~-d~VavfdV 350 (462)
T 2ece_A 277 DLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI-GEVRQYDI 350 (462)
T ss_dssp TCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT-TEEEEEEC
T ss_pred CCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC-CEEEEEEe
Confidence 46688776554432 11111 10 12356788999999998875433 34555553
No 229
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.96 E-value=2.8e-08 Score=92.83 Aligned_cols=193 Identities=13% Similarity=0.005 Sum_probs=112.1
Q ss_pred CCCCceEEEEECCCCCeEE-----EeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceecccccee
Q 021399 50 GHNGAVWCCDVSRDSMTLI-----TGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV 124 (313)
Q Consensus 50 ~H~~~V~~~~~~~~~~~l~-----s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (313)
+|...+..++|||||++++ +|+.+.+|++||+.+++.+.......
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~------------------------------ 175 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDV------------------------------ 175 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEE------------------------------
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCc------------------------------
Confidence 4666788999999999777 34444689999999887532100000
Q ss_pred eeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC-------------CeEEEEECCCCcee-eecccccC-
Q 021399 125 KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED-------------AIVRIWDTETGKLL-KESDKETG- 189 (313)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d-------------~~i~lwd~~~~~~~-~~~~~~~~- 189 (313)
+...+.|+ +++.|+.+..+ ..|++|++.+...- ..+.....
T Consensus 176 -----------------------k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~ 231 (693)
T 3iuj_A 176 -----------------------KFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPA 231 (693)
T ss_dssp -----------------------ESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGG
T ss_pred -----------------------eeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCC
Confidence 01123455 55555555544 35999998765421 11221222
Q ss_pred ceeceEEEEECCCCCEEEEeeC----CCcEEEEECCCCc-EEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccC
Q 021399 190 HKKTITSLAKAADGSHFLTGSL----DKSAKLWDARTLE-LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR 264 (313)
Q Consensus 190 h~~~v~~~~~s~~~~~l~s~s~----dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 264 (313)
|......+.++|||++|+.... ++.|+++|++++. ....+..........++++++.+++....+.
T Consensus 232 ~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~--------- 302 (693)
T 3iuj_A 232 QHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDA--------- 302 (693)
T ss_dssp GCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTC---------
T ss_pred CCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCC---------
Confidence 3445788999999998754432 3589999998763 3344433322222236777777766543321
Q ss_pred CCceeeeeeehhhhhh--hccccccccceeEEEECCCCCeeEEEEE
Q 021399 265 AGKFEAKFFDKILQEE--IGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 265 ~~~~~~~~~~~~~~~~--~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
..+.+..+|...+.. ...+..|...+. .|+|+++.+++...
T Consensus 303 -~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~ 345 (693)
T 3iuj_A 303 -PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYM 345 (693)
T ss_dssp -TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEE
T ss_pred -CCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEE
Confidence 122333444332211 223445666665 89999999877654
No 230
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.96 E-value=1.1e-07 Score=80.88 Aligned_cols=218 Identities=10% Similarity=-0.008 Sum_probs=129.0
Q ss_pred cccccceeEEEEccCCCEEEEeeC-----CCCeEEEeCCCCcEEEEecCC------CCceEEEEECCC-CCeEEEee---
Q 021399 7 KGHERPLTYLKYNKDGDLLFSCAK-----DHTPTVWFADNGERLGTYRGH------NGAVWCCDVSRD-SMTLITGS--- 71 (313)
Q Consensus 7 ~~h~~~v~~~~fs~~g~~l~s~s~-----d~~i~iw~~~~~~~~~~~~~H------~~~V~~~~~~~~-~~~l~s~s--- 71 (313)
.+|...+..++|+++|+++++-.. +..|.+||.++++.+.++... ...+..++++++ +..+++-.
T Consensus 63 ~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~ 142 (343)
T 2qe8_A 63 IITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD 142 (343)
T ss_dssp CCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG
T ss_pred ccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC
Confidence 346678999999999987665443 578999999999877766532 235678999975 45556655
Q ss_pred CCCcEEEEECCCCeEEEEecCCCC--eeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCce
Q 021399 72 ADQTAKLWNVETGAQLFTFNFDSP--ARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRI 149 (313)
Q Consensus 72 ~D~~v~vWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 149 (313)
.++.|.+||+.+++.......... .....+..++...... .. .+. ... ....+
T Consensus 143 ~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~------------------~~---~g~-~~~---~~~~~ 197 (343)
T 2qe8_A 143 DKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIG------------------QP---DGT-VIR---PHLGV 197 (343)
T ss_dssp GGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEE------------------CT---TSC-EEC---CCCCE
T ss_pred CCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEec------------------cC---CCc-eec---eeccc
Confidence 688999999988776544321100 0001111111110000 00 000 000 01235
Q ss_pred EEEEEccCCCEEEEeeCCC-eEEEEECC---CCce-----eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399 150 NRAVWGPLNRTIISAGEDA-IVRIWDTE---TGKL-----LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (313)
Q Consensus 150 ~~~~~~~~~~~i~t~~~d~-~i~lwd~~---~~~~-----~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~ 220 (313)
+.++++|+++.+..+..++ .|..++.. .+.. ...+. ..++......++++++|..+++...++.|..||.
T Consensus 198 ~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 198 NGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp EEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred ceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 7799999998887776555 55555431 1110 00000 0123335567899999999999989999999999
Q ss_pred CCCcEEEEEec--CCceeEEEeccCCCEEEEc
Q 021399 221 RTLELIKTYVT--ERPVNAVTMSPLLDHVVLG 250 (313)
Q Consensus 221 ~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~ 250 (313)
++++....... ......+++.+++...+++
T Consensus 277 ~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~ 308 (343)
T 2qe8_A 277 ADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDC 308 (343)
T ss_dssp TTTEEEEEEECGGGSCEEEEEECTTSCEEEEE
T ss_pred CCCCEEEEEECCceecCCeeEECCCCcEEEEe
Confidence 66654322222 2346788998876544443
No 231
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.96 E-value=6.2e-07 Score=74.93 Aligned_cols=226 Identities=12% Similarity=0.061 Sum_probs=130.0
Q ss_pred EEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccce
Q 021399 45 LGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIH 123 (313)
Q Consensus 45 ~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (313)
+..+..+........|+|+++ ++++...++.|..|+.. ++.............+.+.+++.+.++....- .
T Consensus 37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~-------~ 108 (305)
T 3dr2_A 37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDVLLDATAFTNGNAVDAQQRLVHCEHGRR-------A 108 (305)
T ss_dssp CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEEEEESCSCEEEEEECTTSCEEEEETTTT-------E
T ss_pred eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEEEeCCCCccceeeECCCCCEEEEECCCC-------E
Confidence 344444555677889999998 67777788999999984 44322222344566777877777665543210 0
Q ss_pred eeeeeeCCCCCCCceEEE---ecC-CCCceEEEEEccCCCEEEE----eeC-------------CCeEEEEECCCCceee
Q 021399 124 VKRIARDPADQGGESVLI---LKG-PQGRINRAVWGPLNRTIIS----AGE-------------DAIVRIWDTETGKLLK 182 (313)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~---~~~-~~~~i~~~~~~~~~~~i~t----~~~-------------d~~i~lwd~~~~~~~~ 182 (313)
+..+ +. + +..... ..+ ....++.+.+.|+|+.+++ |.. .+.|..+|..+++...
T Consensus 109 v~~~--~~-~--g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~ 183 (305)
T 3dr2_A 109 ITRS--DA-D--GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQR 183 (305)
T ss_dssp EEEE--CT-T--SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEE
T ss_pred EEEE--CC-C--CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEE
Confidence 1000 00 0 111110 111 1234567889999998876 332 3568888886665322
Q ss_pred ecccccCceeceEEEEECCCCCEEEEeeCC------CcEEEEECCCCcEE--EEEe--cCCceeEEEeccCCCEEEEccc
Q 021399 183 ESDKETGHKKTITSLAKAADGSHFLTGSLD------KSAKLWDARTLELI--KTYV--TERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 183 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d------g~i~iwd~~~~~~~--~~~~--~~~~~~~~~~~p~~~~~~~~~~ 252 (313)
+. .......++|+||++.|+.+... +.|..||+...... ..+. .......+++.+++. +.++..
T Consensus 184 -~~----~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~ 257 (305)
T 3dr2_A 184 -MA----DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG 257 (305)
T ss_dssp -EE----EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCS
T ss_pred -Ee----cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecC
Confidence 11 22356789999999987777665 68999998765411 1111 122345678888877 455442
Q ss_pred ccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEE
Q 021399 253 QDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFL 306 (313)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~ 306 (313)
++ +..++.. ++.+..+... ..+..++|+||++.+-+.
T Consensus 258 -~g--v~~~~~~-------------g~~~~~~~~~-~~~~~~~f~~d~~~L~it 294 (305)
T 3dr2_A 258 -TG--VCVFDSD-------------GQLLGHIPTP-GTASNCTFDQAQQRLFIT 294 (305)
T ss_dssp -SE--EEEECTT-------------SCEEEEEECS-SCCCEEEECTTSCEEEEE
T ss_pred -Cc--EEEECCC-------------CCEEEEEECC-CceeEEEEeCCCCEEEEE
Confidence 21 4444432 1222222222 258899999999876543
No 232
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.88 E-value=1.1e-06 Score=76.58 Aligned_cols=204 Identities=10% Similarity=0.077 Sum_probs=119.7
Q ss_pred EEEccCCCEEEEeeCCC--CeEEEeCCCCcEEEEe---cC-CCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399 16 LKYNKDGDLLFSCAKDH--TPTVWFADNGERLGTY---RG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (313)
Q Consensus 16 ~~fs~~g~~l~s~s~d~--~i~iw~~~~~~~~~~~---~~-H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~ 89 (313)
++|+++++.|+.+..++ .|.+++...+.....+ .. +...+.+++++|++..|+.+..++.|+.||+.++.....
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~ 255 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI 255 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence 89999999999888766 6778887665543333 22 456678899999444444467789999999987764332
Q ss_pred ----ecCC-CC-ee-EEEeec-CCeEEEEECCC--ceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC
Q 021399 90 ----FNFD-SP-AR-SVDFAV-GDKLAVITTDP--FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR 159 (313)
Q Consensus 90 ----~~~~-~~-~~-~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 159 (313)
.... .. .. .+.+.+ +..+.+..... ...+........+...........-............++++|+++
T Consensus 256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~ 335 (409)
T 3hrp_A 256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN 335 (409)
T ss_dssp EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC
T ss_pred ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC
Confidence 1111 11 12 788888 45555543321 111111000000000000000000000000023467899999999
Q ss_pred EEEEee-CCCeEEEEECCCCceeeecccc---cC---------ceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399 160 TIISAG-EDAIVRIWDTETGKLLKESDKE---TG---------HKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (313)
Q Consensus 160 ~i~t~~-~d~~i~lwd~~~~~~~~~~~~~---~~---------h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~ 220 (313)
.+++-. .++.|+.||+.++.. ..+... .+ .-.....++++++|..+++-..++.|+.+++
T Consensus 336 lyvad~~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 336 FYIVDGFKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEETTTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEeCCCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 777777 889999999777653 222211 00 1245889999999888888888888887765
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.75 E-value=1.1e-06 Score=81.92 Aligned_cols=216 Identities=15% Similarity=0.121 Sum_probs=121.0
Q ss_pred eEEEEccCCCEEEEeeCCCC-------------------eEEEeCCCCcEEEEecC--CC-------CceEEEEECCCCC
Q 021399 14 TYLKYNKDGDLLFSCAKDHT-------------------PTVWFADNGERLGTYRG--HN-------GAVWCCDVSRDSM 65 (313)
Q Consensus 14 ~~~~fs~~g~~l~s~s~d~~-------------------i~iw~~~~~~~~~~~~~--H~-------~~V~~~~~~~~~~ 65 (313)
...+|+|++.+++.++.++. |..+|.++|+.+..++. |. .+........+|+
T Consensus 238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 36789999999999988763 89999999999988764 32 1222223333564
Q ss_pred ---eEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE
Q 021399 66 ---TLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 141 (313)
Q Consensus 66 ---~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (313)
.++.++.+|.++++|.++++.+....+....-...+... ..-+. .. .... . . ........
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~--~~-------~~~~-~---~---~~~~~~~~ 381 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPIL--DE-------ENAA-Y---W---KNGKRNLV 381 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEE--CH-------HHHC-T---T---TSSSCEEE
T ss_pred EEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCccc--ch-------hhcc-c---c---CCCCeeEe
Confidence 788999999999999999998865543221000000000 00000 00 0000 0 0 00000000
Q ss_pred ecCCCCc--eEEEEEccCCCEEEEee---------------------------------------------CCCeEEEEE
Q 021399 142 LKGPQGR--INRAVWGPLNRTIISAG---------------------------------------------EDAIVRIWD 174 (313)
Q Consensus 142 ~~~~~~~--i~~~~~~~~~~~i~t~~---------------------------------------------~d~~i~lwd 174 (313)
..+..+. -..++++|....+.+.. .++.|+.||
T Consensus 382 ~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D 461 (689)
T 1yiq_A 382 TPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWD 461 (689)
T ss_dssp SSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEE
T ss_pred CCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEE
Confidence 0000000 00122222222222210 148899999
Q ss_pred CCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCce--eEEEeccCCCEEEE
Q 021399 175 TETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPV--NAVTMSPLLDHVVL 249 (313)
Q Consensus 175 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~ 249 (313)
+.+++.+=+... ......-.+...+..++.++.||.++.||.++++.+.++.....+ .-+.+..++.+.++
T Consensus 462 ~~tG~~~W~~~~----~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~ 534 (689)
T 1yiq_A 462 PVKQQAAWEVPY----VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT 534 (689)
T ss_dssp TTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred CCCCCeEeEccC----CCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence 999986544321 112222244456778999999999999999999999888654332 34666677765544
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.74 E-value=1.8e-09 Score=93.16 Aligned_cols=163 Identities=13% Similarity=0.058 Sum_probs=87.8
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCc-eE-EEEECCCCCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA-VW-CCDVSRDSMTLITGSADQTAKLWNVETGAQLFT 89 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~-V~-~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~ 89 (313)
.+.+..+..++..+++++.|+.++.||.++++.+..++.+... +. +..+. ++..+++++.|+.++.||..+++.++.
T Consensus 39 ~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~ 117 (369)
T 2hz6_A 39 PVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQT 117 (369)
T ss_dssp CSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------
T ss_pred CceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEE
Confidence 3444445567888888899999999999999887666544221 11 01111 345678889999999999999887654
Q ss_pred ecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe
Q 021399 90 FNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (313)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~ 169 (313)
+.... ....+|.+..+++++.|+.
T Consensus 118 ~~~~~--------------------------------------------------------~~~~~p~~~~v~~~~~dg~ 141 (369)
T 2hz6_A 118 LSSAF--------------------------------------------------------ADSLSPSTSLLYLGRTEYT 141 (369)
T ss_dssp -----------------------------------------------------------------------EEEEEEEEE
T ss_pred ecCCC--------------------------------------------------------cccccccCCEEEEEecCCE
Confidence 32110 0011234566788888999
Q ss_pred EEEEECCCCceeeecccccCceeceEEEEECCCC---CEEEEeeCCCcEEEEECCCCcEEEEEecCCcee
Q 021399 170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADG---SHFLTGSLDKSAKLWDARTLELIKTYVTERPVN 236 (313)
Q Consensus 170 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~ 236 (313)
|+.||..+++.+-++.. + .....++..+. ..++.++.||.++.||.++++.+-+.....++.
T Consensus 142 v~a~d~~tG~~~W~~~~---~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~ 206 (369)
T 2hz6_A 142 ITMYDTKTRELRWNATY---F--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVV 206 (369)
T ss_dssp EECCCSSSSSCCCEEEE---E--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEE
T ss_pred EEEEECCCCCEEEeEec---c--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceE
Confidence 99999998876433221 1 11222333322 457788999999999999999887776555543
No 235
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.71 E-value=3.8e-06 Score=68.27 Aligned_cols=202 Identities=14% Similarity=0.036 Sum_probs=118.2
Q ss_pred EEEEecCCCC--ceEEEEECCCCCeEEEeeC--CCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceecc
Q 021399 44 RLGTYRGHNG--AVWCCDVSRDSMTLITGSA--DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 119 (313)
Q Consensus 44 ~~~~~~~H~~--~V~~~~~~~~~~~l~s~s~--D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (313)
.+.++. |.. ....++|++++.++++.+. ++.|.+.|+.+++.+..........
T Consensus 11 vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~f---------------------- 67 (266)
T 2iwa_A 11 VLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYF---------------------- 67 (266)
T ss_dssp EEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCC----------------------
T ss_pred EEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcc----------------------
Confidence 445553 443 3678999998877776664 6899999999988765443211000
Q ss_pred ccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEE
Q 021399 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199 (313)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~ 199 (313)
...+.+. .++.+++...++.+.++|..+.+.+.++....+ .-..+
T Consensus 68 -----------------------------geGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~---~g~gl-- 112 (266)
T 2iwa_A 68 -----------------------------GEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMK---DGWGL-- 112 (266)
T ss_dssp -----------------------------EEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECCSS---SCCEE--
T ss_pred -----------------------------eEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECCCC---CeEEE--
Confidence 0011111 123445566789999999999888877643211 22333
Q ss_pred CCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC---C---ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeee
Q 021399 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYVTE---R---PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF 273 (313)
Q Consensus 200 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (313)
++||+.++.+..+++|.++|.++.+.+..+... . ..+.++|. ++ .+++.... ...+..-|...++...+ +
T Consensus 113 t~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~-~~~V~vID~~tg~V~~~-I 188 (266)
T 2iwa_A 113 ATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQ-TDCIARISAKDGTLLGW-I 188 (266)
T ss_dssp EECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETT-SSEEEEEETTTCCEEEE-E
T ss_pred EECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCC-CCeEEEEECCCCcEEEE-E
Confidence 456776666667889999999999988887632 2 35677777 43 56655432 33455556655554322 2
Q ss_pred ehhhhhhh--ccccccccceeEEEECCCCCeeEEEEE
Q 021399 274 DKILQEEI--GGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 274 ~~~~~~~~--~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
+......- ..-..-....+.|+|+|++++ .|+..
T Consensus 189 ~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~-lfVTg 224 (266)
T 2iwa_A 189 LLPNLRKKLIDEGFRDIDVLNGIAWDQENKR-IFVTG 224 (266)
T ss_dssp ECHHHHHHHHHTTCTTCCCEEEEEEETTTTE-EEEEE
T ss_pred ECCCcccccccccccccCceEEEEEcCCCCE-EEEEC
Confidence 32110000 000000135589999999987 34443
No 236
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.71 E-value=3.6e-06 Score=78.27 Aligned_cols=205 Identities=13% Similarity=0.093 Sum_probs=115.9
Q ss_pred CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCc----------e-EEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGA----------V-WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~----------V-~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
+..|+.++.++.|.-+|.++|+.+.+++..... + ..+++ ++..++.++.|+.+..+|..+++.++..
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWHQ 154 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEeee
Confidence 556777888899999999999999888654321 1 12233 3557788889999999999999999887
Q ss_pred cCC-C-----CeeEEEeecCCeEEEEECCC------ce-ecc--ccceeeeeeeCCCCCC------------------Cc
Q 021399 91 NFD-S-----PARSVDFAVGDKLAVITTDP------FM-ELN--SAIHVKRIARDPADQG------------------GE 137 (313)
Q Consensus 91 ~~~-~-----~~~~~~~~~~~~~~~~~~~~------~~-~~~--~~~~~~~~~~~~~~~~------------------~~ 137 (313)
... . .....-...++.+++..... .+ .++ .....|.......... ++
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~ 234 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGK 234 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGC
T ss_pred cCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCc
Confidence 643 1 11100011244444433211 00 011 1111122111100000 00
Q ss_pred eEEEecCCCCceEEEEEccCCCEEEEeeCCC-------------------eEEEEECCCCceeeecccccCce-------
Q 021399 138 SVLILKGPQGRINRAVWGPLNRTIISAGEDA-------------------IVRIWDTETGKLLKESDKETGHK------- 191 (313)
Q Consensus 138 ~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~-------------------~i~lwd~~~~~~~~~~~~~~~h~------- 191 (313)
. ....+.......+.++|.+..+..+..++ .|..+|..+++.+=.+.. ..|.
T Consensus 235 ~-~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~-~~~d~wd~~~~ 312 (677)
T 1kb0_A 235 W-WEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQE-TPGDNWDYTST 312 (677)
T ss_dssp H-HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEES-STTCCSCCCCC
T ss_pred e-eEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEec-CCCcccccccC
Confidence 0 00000001112456777777777776554 599999999987543321 1121
Q ss_pred eceEEEEECCCC---CEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 192 KTITSLAKAADG---SHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 192 ~~v~~~~~s~~~---~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
....-+....+| ..++.++.+|.++++|.++++.+..+.
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 112222333467 689999999999999999999987664
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.70 E-value=3.4e-06 Score=73.19 Aligned_cols=187 Identities=12% Similarity=0.105 Sum_probs=116.7
Q ss_pred eeEEEEccCCCEEEEeeCC------CCeEEEeCCCCcEEEEecCCCCc---eEEEEECCCCCeEEEee------------
Q 021399 13 LTYLKYNKDGDLLFSCAKD------HTPTVWFADNGERLGTYRGHNGA---VWCCDVSRDSMTLITGS------------ 71 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~d------~~i~iw~~~~~~~~~~~~~H~~~---V~~~~~~~~~~~l~s~s------------ 71 (313)
...+..+|+| .++++..+ +.+.+.|.++.+.+.++.--.++ -..+.|+|+++.++|..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~ 218 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLK 218 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccc
Confidence 4567788999 88887666 78999999999999888632221 23477899999888874
Q ss_pred -------CCCcEEEEECCCCeEEEEecCCC---CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEE
Q 021399 72 -------ADQTAKLWNVETGAQLFTFNFDS---PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLI 141 (313)
Q Consensus 72 -------~D~~v~vWd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (313)
.+.+|.+||+.+++.+.++.... ....+.|
T Consensus 219 ~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f---------------------------------------- 258 (462)
T 2ece_A 219 LEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRP---------------------------------------- 258 (462)
T ss_dssp TTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEE----------------------------------------
T ss_pred hhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEe----------------------------------------
Confidence 37899999999887666554321 1111112
Q ss_pred ecCCCCceEEEEEccCCCEEEEee------CCCeEEEEECCCCce--eeec-------c-------cccC-ceeceEEEE
Q 021399 142 LKGPQGRINRAVWGPLNRTIISAG------EDAIVRIWDTETGKL--LKES-------D-------KETG-HKKTITSLA 198 (313)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~i~t~~------~d~~i~lwd~~~~~~--~~~~-------~-------~~~~-h~~~v~~~~ 198 (313)
.++|++++..++. .++.|.+|....++. .+.+ . ...+ -......+.
T Consensus 259 -----------~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~ 327 (462)
T 2ece_A 259 -----------LHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID 327 (462)
T ss_dssp -----------CSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred -----------eECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence 1244443333222 233444333222110 0000 0 0000 023577899
Q ss_pred ECCCCCEEEEeeC-CCcEEEEECC---CCcEEEEEecCC---------------ceeEEEeccCCCEEEEcc
Q 021399 199 KAADGSHFLTGSL-DKSAKLWDAR---TLELIKTYVTER---------------PVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 199 ~s~~~~~l~s~s~-dg~i~iwd~~---~~~~~~~~~~~~---------------~~~~~~~~p~~~~~~~~~ 251 (313)
+|+||++|..+.. .+.|.++|+. +.+.+..+.... ....++++|++..++++.
T Consensus 328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999999888775 6889999985 245555554331 247899999999998875
No 238
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.69 E-value=4.6e-07 Score=81.24 Aligned_cols=256 Identities=10% Similarity=-0.018 Sum_probs=149.4
Q ss_pred cCCCEEEEeeC-CCCeEEEeCCCCcEEEEecC-CCCceEEEEE-C-CCCCeEEEee------------------CCCcEE
Q 021399 20 KDGDLLFSCAK-DHTPTVWFADNGERLGTYRG-HNGAVWCCDV-S-RDSMTLITGS------------------ADQTAK 77 (313)
Q Consensus 20 ~~g~~l~s~s~-d~~i~iw~~~~~~~~~~~~~-H~~~V~~~~~-~-~~~~~l~s~s------------------~D~~v~ 77 (313)
+||++|+.... +.+|.+-|+++.++.+.++- -......+++ + |++++++.++ .++.+-
T Consensus 99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence 48888887765 45689999999998774432 1234677887 5 8888887774 346799
Q ss_pred EEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC
Q 021399 78 LWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL 157 (313)
Q Consensus 78 vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 157 (313)
+.|.++.+....+........+.++++++.+.+++......... .. ........+.++..... ..+.++
T Consensus 179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i------~~-~~~~~~d~v~V~~~~~~----~~~v~~ 247 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTL------PE-MTAAEMDHIVVFNIAEI----EKAIAA 247 (595)
T ss_dssp EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSH------HH-HTCCSEEEEEEEEHHHH----HHHHHH
T ss_pred EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcch------hh-ccccccceEEEeeccce----eEeccC
Confidence 99999998887776544455667788777776654321100000 00 00000011111110000 001233
Q ss_pred CCEEEEeeCCCeEEEEECCC--Cce-eeecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCc---------
Q 021399 158 NRTIISAGEDAIVRIWDTET--GKL-LKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE--------- 224 (313)
Q Consensus 158 ~~~i~t~~~d~~i~lwd~~~--~~~-~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~--------- 224 (313)
|++... +.|.+.|..+ ++. +..+. -.....++.++|||++++.++ .+.+|.++|+++.+
T Consensus 248 Gk~~~i----~~V~VID~~~~~~~~~~~~Ip----vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~ 319 (595)
T 1fwx_A 248 GDYQEL----NGVKVVDGRKEASSLFTRYIP----IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP 319 (595)
T ss_dssp TCSEEE----TTEEEEECSGGGCCSSEEEEE----EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred CCeeEE----CcEEEEeCcccCCceeEEEEe----cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence 443322 4499999987 443 33332 234567889999999876665 58899999999763
Q ss_pred ---EEEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhh----------hhhcc----cc-c
Q 021399 225 ---LIKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQ----------EEIGG----VK-G 286 (313)
Q Consensus 225 ---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~----~~-~ 286 (313)
.+.++.......-++|+|+| .++++---+ +.+.. ||.... +.+.+ .+ +
T Consensus 320 ~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ld-sqV~k------------wdi~~a~~~~~g~~~~~vi~kidV~yqpG 385 (595)
T 1fwx_A 320 RSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLD-SQVVK------------WNIEDAIRAYAGEKVDPIKDKLDVHYQPG 385 (595)
T ss_dssp GGGEEECCBCCSCEEEEEECTTS-EEEEEETTT-TEEEE------------EEHHHHHHHHHTCSCCCEEEEEECSSCEE
T ss_pred ccceEEEcCCCCCcceEEECCCC-eEEEEEecC-CcEEE------------EEhhHhhhhhcccccceeEEEeecccccc
Confidence 34444444557788999999 666553222 22333 443321 11111 12 4
Q ss_pred cccceeEEEECCCCCeeEEEEEE
Q 021399 287 HFGPINALAFNPDGKRYGFLLLQ 309 (313)
Q Consensus 287 h~~~V~~~~fspdgk~~~~~~~~ 309 (313)
|...-..+.++||||++ |.++|
T Consensus 386 h~~~~~g~t~~~DGk~l-~~~Nk 407 (595)
T 1fwx_A 386 HLKTVMGETLDATNDWL-VCLSK 407 (595)
T ss_dssp EEEETTTTSTTCCSSEE-EEEES
T ss_pred cceeccceEeCCCCCEE-EEcCC
Confidence 54444566789999997 44443
No 239
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.64 E-value=4.3e-06 Score=67.30 Aligned_cols=196 Identities=12% Similarity=0.152 Sum_probs=116.7
Q ss_pred EEEEecCCC--CceEEEEECCCCCeEEEeeCCC--cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceecc
Q 021399 44 RLGTYRGHN--GAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 119 (313)
Q Consensus 44 ~~~~~~~H~--~~V~~~~~~~~~~~l~s~s~D~--~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (313)
.+.++ -|. .....+.|+ ++.++.+.|.+| .|++.|+.+++.+......... +
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~----------F------------ 88 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRY----------F------------ 88 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTC----------C------------
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcc----------c------------
Confidence 44555 344 345788998 678888888876 8999999999876554321100 0
Q ss_pred ccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEE
Q 021399 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199 (313)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~ 199 (313)
++ .+... .++.++....++.+.++|..+.+.+.++... + .-..++
T Consensus 89 ----------------ge-------------Git~~-g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~-~---eG~glt- 133 (262)
T 3nol_A 89 ----------------GE-------------GISDW-KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYD-G---EGWGLT- 133 (262)
T ss_dssp ----------------EE-------------EEEEE-TTEEEEEESSSSEEEEEETTTCCEEEEEECS-S---CCCCEE-
T ss_pred ----------------ee-------------EEEEe-CCEEEEEEeeCCEEEEEECccCcEEEEEECC-C---CceEEe-
Confidence 00 00000 1123444556889999999999988877542 2 113333
Q ss_pred CCCCCEEEEeeCCCcEEEEECCCCcEEEEEec---CC---ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeee
Q 021399 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYVT---ER---PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF 273 (313)
Q Consensus 200 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (313)
+|+..|+.+..+++|.++|.++.+.+.++.. .. .++.+++. + ..+++..-. ...+..-|...++...+ +
T Consensus 134 -~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~-G~lyan~w~-~~~I~vIDp~tG~V~~~-I 208 (262)
T 3nol_A 134 -HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D-GEIFANVWQ-TNKIVRIDPETGKVTGI-I 208 (262)
T ss_dssp -ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T-TEEEEEETT-SSEEEEECTTTCBEEEE-E
T ss_pred -cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C-CEEEEEEcc-CCeEEEEECCCCcEEEE-E
Confidence 4566666666678899999999999888753 22 24567765 3 456655432 33566667766665333 2
Q ss_pred ehhhhhhhcc-ccccccceeEEEECCCCCee
Q 021399 274 DKILQEEIGG-VKGHFGPINALAFNPDGKRY 303 (313)
Q Consensus 274 ~~~~~~~~~~-~~~h~~~V~~~~fspdgk~~ 303 (313)
|......-.. ...-...-+.|||+|++++|
T Consensus 209 d~~~L~~~~~~~~~~~~vlNGIA~dp~~~~l 239 (262)
T 3nol_A 209 DLNGILAEAGPLPSPIDVLNGIAWDKEHHRL 239 (262)
T ss_dssp ECTTGGGGSCSCCSSCCCEEEEEEETTTTEE
T ss_pred ECCcCccccccccCcCCceEEEEEcCCCCEE
Confidence 3221111000 00112355999999998874
No 240
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.63 E-value=8.9e-05 Score=60.35 Aligned_cols=220 Identities=9% Similarity=0.027 Sum_probs=125.7
Q ss_pred cceeEEEEccCCCEEEEe-eCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEE
Q 021399 11 RPLTYLKYNKDGDLLFSC-AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLF 88 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~-s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~ 88 (313)
..+..++|++++..|+.+ ..++.|.+++.+.......+...-.....+++++++. ++++-...+.|.+++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~ 115 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV 115 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEE
Confidence 456789999976655554 4568899999876554333333234678899998654 55555567899999987543322
Q ss_pred EecCC-CCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE-EEee
Q 021399 89 TFNFD-SPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAG 165 (313)
Q Consensus 89 ~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~t~~ 165 (313)
..... .....+.+.+ ++.+.+...... ...+.....+ .....+ ...........+++++++..+ ++-.
T Consensus 116 ~~~~~~~~P~~i~vd~~~g~lyv~~~~~~-----~~~I~~~~~d---g~~~~~-~~~~~~~~P~gia~d~~~~~lyv~d~ 186 (267)
T 1npe_A 116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRD-----NPKIETSHMD---GTNRRI-LAQDNLGLPNGLTFDAFSSQLCWVDA 186 (267)
T ss_dssp EECSSCSSEEEEEEETTTTEEEEEECCSS-----SCEEEEEETT---SCCCEE-EECTTCSCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCCccEEEEeeCCCEEEEEECCCC-----CcEEEEEecC---CCCcEE-EEECCCCCCcEEEEcCCCCEEEEEEC
Confidence 22222 3456777877 455554432200 0011111101 111111 111223456788999976555 5555
Q ss_pred CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCC--ceeEEEeccC
Q 021399 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTER--PVNAVTMSPL 243 (313)
Q Consensus 166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~~~~~~~p~ 243 (313)
..+.|.++|....... .+.. . ......++.. ++..+++....+.|..+|.++++.+.++.... ....+++.|+
T Consensus 187 ~~~~I~~~~~~g~~~~-~~~~--~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 187 GTHRAECLNPAQPGRR-KVLE--G-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTEEEEE-EEEE--C-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred CCCEEEEEecCCCceE-EEec--C-CCCceEEEEe-CCEEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 6789999998754322 2211 1 1233456654 34444444456899999999999888875432 3556666665
Q ss_pred C
Q 021399 244 L 244 (313)
Q Consensus 244 ~ 244 (313)
+
T Consensus 262 ~ 262 (267)
T 1npe_A 262 Q 262 (267)
T ss_dssp C
T ss_pred c
Confidence 3
No 241
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.56 E-value=1.4e-05 Score=68.64 Aligned_cols=228 Identities=12% Similarity=0.092 Sum_probs=122.5
Q ss_pred CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCee---
Q 021399 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPAR--- 97 (313)
Q Consensus 21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~--- 97 (313)
++..++.++.++.+..+|.++++.+................ +..++.++.++.+..+|..+++.++......+..
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 45678888899999999999999887776543221112222 3467778889999999999999888765433221
Q ss_pred ---EEEeecCCeEEEEECCCc-eeccc--cceeeeeeeCCCCCCCceEEEec-CCCCceEEEEEccCCCEEEEeeCCCeE
Q 021399 98 ---SVDFAVGDKLAVITTDPF-MELNS--AIHVKRIARDPADQGGESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIV 170 (313)
Q Consensus 98 ---~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~i~t~~~d~~i 170 (313)
.... .++.+.+...+.. ..++. ....|........ .......+. ....++ . .+..+..++.++.+
T Consensus 180 ~~~~~~~-~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~-~~~~~~~~~~~~~~p~----~--~~~~v~~~~~~g~l 251 (376)
T 3q7m_A 180 GESAPTT-AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQAT-GSTEIDRLSDVDTTPV----V--VNGVVFALAYNGNL 251 (376)
T ss_dssp CCCCCEE-ETTEEEECCTTTEEEEEETTTCCEEEEEECCC------------CCCCCCE----E--ETTEEEEECTTSCE
T ss_pred CCCCcEE-ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCC-CCcccccccccCCCcE----E--ECCEEEEEecCcEE
Confidence 1111 1333333322221 11111 1111111100000 000000000 000111 1 24567777889999
Q ss_pred EEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-C-CceeEEEeccCCCEEE
Q 021399 171 RIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-E-RPVNAVTMSPLLDHVV 248 (313)
Q Consensus 171 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~-~~~~~~~~~p~~~~~~ 248 (313)
..+|..+++.+-.... .....+.. ++..+..++.++.+..+|.++++.+-.... . ........ .++.++
T Consensus 252 ~~~d~~tG~~~w~~~~-----~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~--~~~~l~ 322 (376)
T 3q7m_A 252 TALDLRSGQIMWKREL-----GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVL--YNGNLV 322 (376)
T ss_dssp EEEETTTCCEEEEECC-----CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEE--ETTEEE
T ss_pred EEEECCCCcEEeeccC-----CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEE--ECCEEE
Confidence 9999998886543321 12233333 356788888999999999999998766541 1 11222222 245566
Q ss_pred EcccccCceeEeeccCCCcee
Q 021399 249 LGGGQDASAVTTTDHRAGKFE 269 (313)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~ 269 (313)
++.. ...++.+|...++..
T Consensus 323 v~~~--~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 323 VGDS--EGYLHWINVEDGRFV 341 (376)
T ss_dssp EECT--TSEEEEEETTTCCEE
T ss_pred EEeC--CCeEEEEECCCCcEE
Confidence 5432 334666676666543
No 242
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.50 E-value=0.00015 Score=62.13 Aligned_cols=229 Identities=12% Similarity=0.103 Sum_probs=122.2
Q ss_pred CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCC---------Cce-EEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHN---------GAV-WCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~---------~~V-~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
++..++.++.++.|..+|.++++.+....... ..+ ..+.. ++..++.++.++.+..+|..+++.++..
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQT 129 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence 36678888889999999999999887766422 223 22333 3456777889999999999999988776
Q ss_pred cCCCCeeEEEeecCCeEEEEECCCce-eccc--cceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCC
Q 021399 91 NFDSPARSVDFAVGDKLAVITTDPFM-ELNS--AIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGED 167 (313)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d 167 (313)
.........-...++.+.+...+... .++. ....|...... ..........++ . .+..++.+..+
T Consensus 130 ~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~------~~~~~~~~~~~~----~--~~~~v~~g~~~ 197 (376)
T 3q7m_A 130 KVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDM------PSLSLRGESAPT----T--AFGAAVVGGDN 197 (376)
T ss_dssp ECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----------CCCCCCE----E--ETTEEEECCTT
T ss_pred eCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCC------CceeecCCCCcE----E--ECCEEEEEcCC
Confidence 54332211111124444444333211 1111 11111111100 000000001111 1 13567778889
Q ss_pred CeEEEEECCCCceeeecccccCce-e---ceEEEEECC--CCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEec
Q 021399 168 AIVRIWDTETGKLLKESDKETGHK-K---TITSLAKAA--DGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMS 241 (313)
Q Consensus 168 ~~i~lwd~~~~~~~~~~~~~~~h~-~---~v~~~~~s~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 241 (313)
+.|..+|..+++.+-+........ . .+..+...| .+..++.++.++.+..+|.++++.+....... ...+.
T Consensus 198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~-- 274 (376)
T 3q7m_A 198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFI-- 274 (376)
T ss_dssp TEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEE--
T ss_pred CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCce--
Confidence 999999999887654332110000 0 000000111 24567888889999999999998876654322 22222
Q ss_pred cCCCEEEEcccccCceeEeeccCCCce
Q 021399 242 PLLDHVVLGGGQDASAVTTTDHRAGKF 268 (313)
Q Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (313)
..++.++++.. ...++..|...++.
T Consensus 275 ~~~~~l~~~~~--~g~l~~~d~~tG~~ 299 (376)
T 3q7m_A 275 VDGNRIYLVDQ--NDRVMALTIDGGVT 299 (376)
T ss_dssp EETTEEEEEET--TCCEEEEETTTCCE
T ss_pred EECCEEEEEcC--CCeEEEEECCCCcE
Confidence 23455555432 23355566555543
No 243
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.50 E-value=3.3e-05 Score=62.21 Aligned_cols=195 Identities=11% Similarity=0.083 Sum_probs=117.8
Q ss_pred EEEEecCCC--CceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceecccc
Q 021399 44 RLGTYRGHN--GAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA 121 (313)
Q Consensus 44 ~~~~~~~H~--~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (313)
.+.++ -|. .....+.|+ ++.++.+.+.+|.|++.|+.+++.+... ..... +.
T Consensus 45 Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~----------Fg------------- 98 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNI----------FA------------- 98 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTC----------CE-------------
T ss_pred EEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCc----------ce-------------
Confidence 44455 343 345788887 4678888999999999999998754332 11100 00
Q ss_pred ceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECC
Q 021399 122 IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAA 201 (313)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~ 201 (313)
-.+.+. .++.++....++.+.++|.++.+.+.++... ++ -..++ +
T Consensus 99 ----------------------------eGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~e---GwGLt--~ 143 (268)
T 3nok_A 99 ----------------------------EGLASD-GERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GE---GWGLC--Y 143 (268)
T ss_dssp ----------------------------EEEEEC-SSCEEEEESSSCEEEEEETTTTEEEEEEECS-SC---CCCEE--E
T ss_pred ----------------------------eEEEEe-CCEEEEEEccCCEEEEEECCcCcEEEEEeCC-Cc---eeEEe--c
Confidence 001111 1233455567899999999999988877542 22 23444 4
Q ss_pred CCCEEEEeeCCCcEEEEECCCCcEEEEEecC---C---ceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeeh
Q 021399 202 DGSHFLTGSLDKSAKLWDARTLELIKTYVTE---R---PVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDK 275 (313)
Q Consensus 202 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~---~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (313)
|+..|+.+..+++|.++|.++.+.+.++... . .++.++|. ++ .+++..- ....+..-|.+.++... .+|.
T Consensus 144 Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG-~lyanvw-~s~~I~vIDp~TG~V~~-~Idl 219 (268)
T 3nok_A 144 WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG-VIYANIW-HSSDVLEIDPATGTVVG-VIDA 219 (268)
T ss_dssp ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEET-TCSEEEEECTTTCBEEE-EEEC
T ss_pred CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC-EEEEEEC-CCCeEEEEeCCCCcEEE-EEEC
Confidence 5777777667899999999999998887532 1 34667765 33 5665543 23456666777766533 2343
Q ss_pred hhhhh-hcc-ccccccceeEEEECCCCCee
Q 021399 276 ILQEE-IGG-VKGHFGPINALAFNPDGKRY 303 (313)
Q Consensus 276 ~~~~~-~~~-~~~h~~~V~~~~fspdgk~~ 303 (313)
..... ... ...-...-+.|||+|++++|
T Consensus 220 ~~L~~~~~~~~~~~~~vlNGIA~dp~~~rl 249 (268)
T 3nok_A 220 SALTRAVAGQVTNPEAVLNGIAVEPGSGRI 249 (268)
T ss_dssp HHHHHHHTTTCCCTTCCEEEEEECTTTCCE
T ss_pred CCCcccccccccCcCCceEEEEEcCCCCEE
Confidence 21111 100 01112356999999998874
No 244
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.45 E-value=6.7e-05 Score=68.26 Aligned_cols=70 Identities=10% Similarity=0.008 Sum_probs=47.8
Q ss_pred CCEEEEeeCCCCeEEEeCCCCcEEEEecCCC----CceE-EEEECCCCCeEEEeeC-----CCcEEEEECCCCeEEEEec
Q 021399 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHN----GAVW-CCDVSRDSMTLITGSA-----DQTAKLWNVETGAQLFTFN 91 (313)
Q Consensus 22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~----~~V~-~~~~~~~~~~l~s~s~-----D~~v~vWd~~~~~~~~~~~ 91 (313)
+..++.++.|+.+..+|.++++.+.+.+... ..+. +..+. ++.+++..+. ++.|..+|..+++.++.+.
T Consensus 115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEc
Confidence 5677888889999999999999987765321 0121 11111 4444443332 7999999999999998775
Q ss_pred C
Q 021399 92 F 92 (313)
Q Consensus 92 ~ 92 (313)
.
T Consensus 194 ~ 194 (571)
T 2ad6_A 194 A 194 (571)
T ss_dssp S
T ss_pred c
Confidence 4
No 245
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.44 E-value=0.00019 Score=57.26 Aligned_cols=196 Identities=17% Similarity=0.111 Sum_probs=116.4
Q ss_pred EEEEecCCC--CceEEEEECCCCCeEEEeeCCC--cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceecc
Q 021399 44 RLGTYRGHN--GAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELN 119 (313)
Q Consensus 44 ~~~~~~~H~--~~V~~~~~~~~~~~l~s~s~D~--~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (313)
.+.++ -|. ..+..+.|+. +.++.|.+.+| .|+..|+.+++.+..........
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~f---------------------- 66 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYF---------------------- 66 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCC----------------------
T ss_pred EEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcc----------------------
Confidence 44455 454 4567899986 67778878764 89999999998765543221100
Q ss_pred ccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEE
Q 021399 120 SAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK 199 (313)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~ 199 (313)
++- +... .++.+.....++.+.++|.++.+.+.++... + .-..++
T Consensus 67 ----------------geG-------------i~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~-~---~Gwglt- 111 (243)
T 3mbr_X 67 ----------------GAG-------------IVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYP-G---EGWALT- 111 (243)
T ss_dssp ----------------EEE-------------EEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECS-S---CCCEEE-
T ss_pred ----------------eeE-------------EEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCC-C---CceEEe-
Confidence 000 0000 1223445567899999999999988877532 2 223444
Q ss_pred CCCCCEEEEeeCCCcEEEEECCCCcEEEEEecC------CceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeee
Q 021399 200 AADGSHFLTGSLDKSAKLWDARTLELIKTYVTE------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFF 273 (313)
Q Consensus 200 s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (313)
+++..|+.+..+++|.++|.++.+.+.++... ..++.+.+. ...+++.... ...+..-|.+.++...+ +
T Consensus 112 -~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~-s~~I~vIDp~tG~V~~~-i 186 (243)
T 3mbr_X 112 -SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANVWL-TSRIARIDPASGKVVAW-I 186 (243)
T ss_dssp -ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETT-TTEEEEECTTTCBEEEE-E
T ss_pred -eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEECC-CCeEEEEECCCCCEEEE-E
Confidence 45565555556889999999999998887532 235566654 3456655432 33456667766664322 2
Q ss_pred ehhhhhh-hccc-cccccceeEEEECCCCCee
Q 021399 274 DKILQEE-IGGV-KGHFGPINALAFNPDGKRY 303 (313)
Q Consensus 274 ~~~~~~~-~~~~-~~h~~~V~~~~fspdgk~~ 303 (313)
|...... .... ..-....+.||++|++++|
T Consensus 187 dl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~l 218 (243)
T 3mbr_X 187 DLQALVPDADALTDSTNDVLNGIAFDAEHDRL 218 (243)
T ss_dssp ECGGGSTTTTSCCCTTSSCEEEEEEETTTTEE
T ss_pred ECCcCccccccccCCcCCceEEEEEcCCCCEE
Confidence 3221110 0000 0112356999999998874
No 246
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.43 E-value=6.4e-05 Score=69.79 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=47.8
Q ss_pred CCEEEEeeCCCCeEEEeCCCCcEEEEecCCC----CceEE-EEECCCCCeEEEee-----CCCcEEEEECCCCeEEEEec
Q 021399 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHN----GAVWC-CDVSRDSMTLITGS-----ADQTAKLWNVETGAQLFTFN 91 (313)
Q Consensus 22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~----~~V~~-~~~~~~~~~l~s~s-----~D~~v~vWd~~~~~~~~~~~ 91 (313)
+.+++.++.|+.+..+|.++|+++..++... ..+.+ ..+ .++.+++..+ .++.|..+|.++++.++.+.
T Consensus 117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence 5678888899999999999999988876421 11111 111 1444444332 26899999999999998775
Q ss_pred C
Q 021399 92 F 92 (313)
Q Consensus 92 ~ 92 (313)
.
T Consensus 196 ~ 196 (668)
T 1kv9_A 196 T 196 (668)
T ss_dssp S
T ss_pred c
Confidence 3
No 247
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.40 E-value=0.00049 Score=55.90 Aligned_cols=249 Identities=8% Similarity=-0.041 Sum_probs=126.1
Q ss_pred CEEEEeeCCCCeEEEeCCCCcE-----EEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEecCC-CC
Q 021399 23 DLLFSCAKDHTPTVWFADNGER-----LGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFD-SP 95 (313)
Q Consensus 23 ~~l~s~s~d~~i~iw~~~~~~~-----~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~-~~ 95 (313)
++|+.+.. +.|+.++++.... ...+.........++|+++++ ++++-...+.|..+++.+.......... ..
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 34444443 4677777665432 111222223567899998654 5555556789999999766443333222 35
Q ss_pred eeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeC---CCeEE
Q 021399 96 ARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGE---DAIVR 171 (313)
Q Consensus 96 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~---d~~i~ 171 (313)
...+.+.+. +.+.+..... . .+..+..+ ...... ...........++++|.+..+..+.. .+.|.
T Consensus 81 p~~ia~d~~~~~lyv~d~~~-----~--~I~~~~~~---g~~~~~-~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~ 149 (267)
T 1npe_A 81 PEGIALDHLGRTIFWTDSQL-----D--RIEVAKMD---GTQRRV-LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIE 149 (267)
T ss_dssp EEEEEEETTTTEEEEEETTT-----T--EEEEEETT---SCSCEE-EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEE
T ss_pred ccEEEEEecCCeEEEEECCC-----C--EEEEEEcC---CCCEEE-EEECCCCCccEEEEeeCCCEEEEEECCCCCcEEE
Confidence 567777764 4554443221 0 11111000 001111 11212234578889996555444433 46888
Q ss_pred EEECCCCceeeecccccCceeceEEEEECCCCCEEEE-eeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCCCEEEEc
Q 021399 172 IWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLT-GSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLLDHVVLG 250 (313)
Q Consensus 172 lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s-~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 250 (313)
.+++... ....+.. ..-.....+++++++..|.. -...+.|..+|++.......+........++. +++.++++
T Consensus 150 ~~~~dg~-~~~~~~~--~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~--d~~~lyva 224 (267)
T 1npe_A 150 TSHMDGT-NRRILAQ--DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS--YGKNLYYT 224 (267)
T ss_dssp EEETTSC-CCEEEEC--TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEE--ETTEEEEE
T ss_pred EEecCCC-CcEEEEE--CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEE--eCCEEEEE
Confidence 8887532 2222211 11235788999998766654 44567899999976443322222222234443 34555554
Q ss_pred ccccCceeEeeccCCCceeeeeeehhhhhhhcccccc-ccceeEEEECCCCC
Q 021399 251 GGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGH-FGPINALAFNPDGK 301 (313)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~fspdgk 301 (313)
.... ..+ ..+|..+++.+..+... ....+.|++.||+-
T Consensus 225 ~~~~-~~v------------~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 225 DWKT-NSV------------IAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp ETTT-TEE------------EEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred ECCC-CeE------------EEEeCCCCCceEEEccccccccceeeecCccC
Confidence 3221 222 33444444433333211 12357888888864
No 248
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.38 E-value=1.5e-05 Score=71.62 Aligned_cols=209 Identities=11% Similarity=0.047 Sum_probs=120.4
Q ss_pred ceeEEEE-c-cCCCEEEEee------------------CCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEee
Q 021399 12 PLTYLKY-N-KDGDLLFSCA------------------KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGS 71 (313)
Q Consensus 12 ~v~~~~f-s-~~g~~l~s~s------------------~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s 71 (313)
.+..+++ + |++++++.++ .++.+.+.|.++.+...++.--. .-..++++|+|+++++.+
T Consensus 135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~ 213 (595)
T 1fwx_A 135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTS 213 (595)
T ss_dssp SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEE
T ss_pred CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEe
Confidence 4678887 5 9999999885 24578899999988877765211 223467899999888887
Q ss_pred CCC---------------cEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCC
Q 021399 72 ADQ---------------TAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGG 136 (313)
Q Consensus 72 ~D~---------------~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (313)
.+. .|.+.|....+. .........+ +.+.++-.. .. ...
T Consensus 214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~---~v~~Gk~~~i-----~~V~VID~~---------------~~---~~~ 267 (595)
T 1fwx_A 214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEK---AIAAGDYQEL-----NGVKVVDGR---------------KE---ASS 267 (595)
T ss_dssp SCTTCCSSHHHHTCCSEEEEEEEEHHHHHH---HHHHTCSEEE-----TTEEEEECS---------------GG---GCC
T ss_pred cCcccCcchhhccccccceEEEeeccceeE---eccCCCeeEE-----CcEEEEeCc---------------cc---CCc
Confidence 653 233333211100 0000000000 111111110 00 000
Q ss_pred ceEEEecCCCCceEEEEEccCCCEEEEe-eCCCeEEEEECCCCc------------eeeecccccCceeceEEEEECCCC
Q 021399 137 ESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGK------------LLKESDKETGHKKTITSLAKAADG 203 (313)
Q Consensus 137 ~~~~~~~~~~~~i~~~~~~~~~~~i~t~-~~d~~i~lwd~~~~~------------~~~~~~~~~~h~~~v~~~~~s~~~ 203 (313)
..+..+... .....+.++|+|++++.+ ..+.+|.++|+.+.+ ...++. -......++|+++|
T Consensus 268 ~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~----vG~gP~h~aF~~dG 342 (595)
T 1fwx_A 268 LFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE----LGLGPLHTAFDGRG 342 (595)
T ss_dssp SSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB----CCSCEEEEEECTTS
T ss_pred eeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC----CCCCcceEEECCCC
Confidence 001111111 133568899999976654 578899999998542 122221 23457889999999
Q ss_pred CEEEEeeCCCcEEEEECCC----------CcEEEEEecCCce------eEEEeccCCCEEEEccc
Q 021399 204 SHFLTGSLDKSAKLWDART----------LELIKTYVTERPV------NAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 204 ~~l~s~s~dg~i~iwd~~~----------~~~~~~~~~~~~~------~~~~~~p~~~~~~~~~~ 252 (313)
...++.-.|++|.+||+++ .+.+.++...... ....++|+|..++++..
T Consensus 343 ~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 343 NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 5455666799999999887 5566666543332 12345888988887644
No 249
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.35 E-value=0.00011 Score=68.12 Aligned_cols=98 Identities=10% Similarity=0.106 Sum_probs=60.7
Q ss_pred EEEEcc-CCCEEEEeeCCC-----------CeEEEeCCCCcE--EEEec-CCCCceEEEEECCCCCeEEEeeC-CCcEEE
Q 021399 15 YLKYNK-DGDLLFSCAKDH-----------TPTVWFADNGER--LGTYR-GHNGAVWCCDVSRDSMTLITGSA-DQTAKL 78 (313)
Q Consensus 15 ~~~fs~-~g~~l~s~s~d~-----------~i~iw~~~~~~~--~~~~~-~H~~~V~~~~~~~~~~~l~s~s~-D~~v~v 78 (313)
.+++.+ +|+.++.|+.+. .+.+||..+++. +..+. .+.....++++..++++++.||. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456677 889999887653 478899888763 22232 23333334677788999999984 568999
Q ss_pred EECCCCeEEEEecCC--CCeeEEEeecCCeEEEEEC
Q 021399 79 WNVETGAQLFTFNFD--SPARSVDFAVGDKLAVITT 112 (313)
Q Consensus 79 Wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 112 (313)
||+.+.+-....... .....+.+.+++++.++..
T Consensus 270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECC
T ss_pred ecCcCCceeECCCCCccccccceEEecCCeEEEEeC
Confidence 999876533322221 2223444555666665544
No 250
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.33 E-value=0.0002 Score=65.37 Aligned_cols=77 Identities=17% Similarity=0.153 Sum_probs=50.8
Q ss_pred EEEccCCCE----EEEeeCCCCeEEEeCCCCcEEEEecCCCC----ceEE-EEECCCCCeEEEee-----CCCcEEEEEC
Q 021399 16 LKYNKDGDL----LFSCAKDHTPTVWFADNGERLGTYRGHNG----AVWC-CDVSRDSMTLITGS-----ADQTAKLWNV 81 (313)
Q Consensus 16 ~~fs~~g~~----l~s~s~d~~i~iw~~~~~~~~~~~~~H~~----~V~~-~~~~~~~~~l~s~s-----~D~~v~vWd~ 81 (313)
++++|.+.. |+.++.|+.+.-+|.++|+++...+.... .+.+ ..+ .++.+++.++ .++.|+.+|.
T Consensus 111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g~V~vg~~g~e~g~~g~v~A~D~ 189 (599)
T 1w6s_A 111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKDKVIIGSSGAELGVRGYLTAYDV 189 (599)
T ss_dssp CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEECCBCGGGTCCCEEEEEET
T ss_pred eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECCEEEEEecccccCCCCeEEEEEC
Confidence 445444444 78888999999999999999877653220 2211 111 1444444332 4899999999
Q ss_pred CCCeEEEEecCC
Q 021399 82 ETGAQLFTFNFD 93 (313)
Q Consensus 82 ~~~~~~~~~~~~ 93 (313)
++++.++.+...
T Consensus 190 ~TG~~~W~~~~~ 201 (599)
T 1w6s_A 190 KTGEQVWRAYAT 201 (599)
T ss_dssp TTCCEEEEEESS
T ss_pred CCCcEEEEEcCC
Confidence 999999887643
No 251
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.31 E-value=0.0001 Score=69.48 Aligned_cols=188 Identities=11% Similarity=-0.026 Sum_probs=97.6
Q ss_pred ceeEEEEc-cCCCEEEEeeC-CC----CeEEEeCCCC-cEEE-EecCCCCceEEEEECCCCCeEEEeeCCC-----cEEE
Q 021399 12 PLTYLKYN-KDGDLLFSCAK-DH----TPTVWFADNG-ERLG-TYRGHNGAVWCCDVSRDSMTLITGSADQ-----TAKL 78 (313)
Q Consensus 12 ~v~~~~fs-~~g~~l~s~s~-d~----~i~iw~~~~~-~~~~-~~~~H~~~V~~~~~~~~~~~l~s~s~D~-----~v~v 78 (313)
.+...+|| |||++|+-+.. +| .|+++|++++ +.+. .+.. ....++|+|||+.|+-...|. .|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 56778999 99998885433 22 4999999988 6321 1111 123578999998666555442 2444
Q ss_pred EECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec-CCCCceEEEEEccC
Q 021399 79 WNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK-GPQGRINRAVWGPL 157 (313)
Q Consensus 79 Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~ 157 (313)
+++.+++. ..+..+. ........+.|+|+
T Consensus 252 ~~lgt~~~--------------------------------------------------~~~lv~~~~~~~~~~~~~~SpD 281 (751)
T 2xe4_A 252 HVMGKLQS--------------------------------------------------EDVCLYEEHNPLFSAFMYKAAD 281 (751)
T ss_dssp EETTSCGG--------------------------------------------------GCEEEEECCCTTCEEEEEECTT
T ss_pred EECCCCch--------------------------------------------------hcEEEEecCCCceEEEEEECCC
Confidence 44433210 0000111 11122346778999
Q ss_pred CCEEEEee---CCCeEEEEECCCCc-ee--eecccccCceeceEEEEECCCCCEEEEeeCC----CcEEEEECCCCcEEE
Q 021399 158 NRTIISAG---EDAIVRIWDTETGK-LL--KESDKETGHKKTITSLAKAADGSHFLTGSLD----KSAKLWDARTLELIK 227 (313)
Q Consensus 158 ~~~i~t~~---~d~~i~lwd~~~~~-~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d----g~i~iwd~~~~~~~~ 227 (313)
+++|+... ....|.++|+.++. .. ..+.. .......++.|+.++.+++....+ ..|..+|+.+.....
T Consensus 282 g~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~--~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~ 359 (751)
T 2xe4_A 282 TNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP--REKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWS 359 (751)
T ss_dssp SSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC--CCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCC
T ss_pred CCEEEEEecCCCCceEEEEECCCCCCCceeEEeec--CCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccce
Confidence 99887654 34568889987652 12 22221 123344555554444444444443 256666776422212
Q ss_pred E--EecCCceeEEEeccCCCEEEEccccc
Q 021399 228 T--YVTERPVNAVTMSPLLDHVVLGGGQD 254 (313)
Q Consensus 228 ~--~~~~~~~~~~~~~p~~~~~~~~~~~~ 254 (313)
. +.......--.+.+.++.+++....+
T Consensus 360 ~~li~~~~~~~l~~~~~~~~~lv~~~~~~ 388 (751)
T 2xe4_A 360 HVLVDHSEDVFMESIAVRSNYLVVAGRRA 388 (751)
T ss_dssp CEEECCCSSEEEEEEEECSSEEEEEEEET
T ss_pred eeEECCCCCcEEEEEEEECCEEEEEEEeC
Confidence 2 22222222223444566776655443
No 252
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.28 E-value=0.00012 Score=67.92 Aligned_cols=78 Identities=14% Similarity=0.194 Sum_probs=58.7
Q ss_pred EEEEccCCCEEEEeeCCCC-------------------eEEEeCCCCcEEEEecC--CC-------CceEEEEECCCCC-
Q 021399 15 YLKYNKDGDLLFSCAKDHT-------------------PTVWFADNGERLGTYRG--HN-------GAVWCCDVSRDSM- 65 (313)
Q Consensus 15 ~~~fs~~g~~l~s~s~d~~-------------------i~iw~~~~~~~~~~~~~--H~-------~~V~~~~~~~~~~- 65 (313)
..+++|++.+++.++.++. |.-+|.++++.+..++. |. .+.....+..+|+
T Consensus 234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~ 313 (668)
T 1kv9_A 234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP 313 (668)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence 5789998889988887763 88899999999888764 32 2232233334665
Q ss_pred --eEEEeeCCCcEEEEECCCCeEEEEecC
Q 021399 66 --TLITGSADQTAKLWNVETGAQLFTFNF 92 (313)
Q Consensus 66 --~l~s~s~D~~v~vWd~~~~~~~~~~~~ 92 (313)
.++.++.+|.+.++|..+++.+....+
T Consensus 314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~ 342 (668)
T 1kv9_A 314 RKVLMQAPKNGFFYVLDRTNGKLISAEKF 342 (668)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred EEEEEEECCCCEEEEEECCCCCEeccccc
Confidence 688999999999999999998865543
No 253
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.28 E-value=0.00071 Score=61.63 Aligned_cols=71 Identities=17% Similarity=0.187 Sum_probs=47.9
Q ss_pred CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCC----ceE-EEEECC---CCC-eEEEee------CCCcEEEEECCCCeE
Q 021399 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNG----AVW-CCDVSR---DSM-TLITGS------ADQTAKLWNVETGAQ 86 (313)
Q Consensus 22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~----~V~-~~~~~~---~~~-~l~s~s------~D~~v~vWd~~~~~~ 86 (313)
+..++.++.|+.+.-+|.++|+.+...+.... .+. +..+.. +++ .++.++ .++.|..+|..+++.
T Consensus 117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~ 196 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE 196 (582)
T ss_dssp TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence 55778888999999999999999877654321 111 111111 232 555554 379999999999999
Q ss_pred EEEecC
Q 021399 87 LFTFNF 92 (313)
Q Consensus 87 ~~~~~~ 92 (313)
++....
T Consensus 197 ~W~~~~ 202 (582)
T 1flg_A 197 IWMRPF 202 (582)
T ss_dssp EEEEES
T ss_pred EeecCC
Confidence 886543
No 254
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.25 E-value=0.0013 Score=54.52 Aligned_cols=224 Identities=10% Similarity=-0.014 Sum_probs=123.7
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCC--cEEEEECCCCeEEE
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQ--TAKLWNVETGAQLF 88 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~--~v~vWd~~~~~~~~ 88 (313)
.....++|+++|+.+++-..++.|..||.+.. ....+. -.+....+++.++++++++..... .|..+|..+++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 45678999999998777768889999987654 333332 235688999999998766554322 36666777776543
Q ss_pred EecCC--CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCc-eEEEe---------cCCCCceEEEEEcc
Q 021399 89 TFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGE-SVLIL---------KGPQGRINRAVWGP 156 (313)
Q Consensus 89 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~~~~~i~~~~~~~ 156 (313)
..... .....+...++..+.+..... ..++.+... .+. .+... .+.....+.+ +|
T Consensus 110 ~~~~~~~~~~~g~~~~~~~~~~v~d~~~-------g~i~~~d~~----~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~ 176 (306)
T 2p4o_A 110 LLTLPDAIFLNGITPLSDTQYLTADSYR-------GAIWLIDVV----QPSGSIWLEHPMLARSNSESVFPAANGL--KR 176 (306)
T ss_dssp EEECTTCSCEEEEEESSSSEEEEEETTT-------TEEEEEETT----TTEEEEEEECGGGSCSSTTCCSCSEEEE--EE
T ss_pred EEeCCCccccCcccccCCCcEEEEECCC-------CeEEEEeCC----CCcEeEEEECCccccccccCCCCcCCCc--Cc
Confidence 33221 112222223333333322110 011111100 000 00000 0011122334 67
Q ss_pred CCCEE-EEeeCCCeEEEEECCC-CceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEE--EEecC
Q 021399 157 LNRTI-ISAGEDAIVRIWDTET-GKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIK--TYVTE 232 (313)
Q Consensus 157 ~~~~i-~t~~~d~~i~lwd~~~-~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~ 232 (313)
+++.+ ++-...+.|..+|+.. ++. ...... ........++++++|+..++....+.|..+|.+ ++... .+...
T Consensus 177 dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~~~-~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~ 253 (306)
T 2p4o_A 177 FGNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG 253 (306)
T ss_dssp ETTEEEEEETTTTEEEEEEBCTTSCB-CCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT
T ss_pred CCCEEEEEeCCCCEEEEEEeCCCCCC-CccEEE-eccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc
Confidence 77654 4555678999999864 321 110000 001235668889999988877778899999976 55432 23222
Q ss_pred -CceeEEEec---cCCCEEEEccc
Q 021399 233 -RPVNAVTMS---PLLDHVVLGGG 252 (313)
Q Consensus 233 -~~~~~~~~~---p~~~~~~~~~~ 252 (313)
....+++|. |+++.++++..
T Consensus 254 ~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 254 VIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp CTTEEEEEECCSTTTTTEEEEEEC
T ss_pred cCCceEEEEecccCCCCEEEEECC
Confidence 457888998 88888877643
No 255
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.23 E-value=5.1e-05 Score=63.54 Aligned_cols=246 Identities=15% Similarity=0.101 Sum_probs=123.8
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~ 91 (313)
.+.++...++|...+ ++.+ +..+|. +++.+..+...........+. +..+..++.++.+..+|.. ++......
T Consensus 61 ~~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~ 133 (330)
T 3hxj_A 61 IECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK 133 (330)
T ss_dssp EEECCEETTTTEECC-SSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred cccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc
Confidence 345566666665444 4444 777775 565544444333222223333 3456667788999999988 76665554
Q ss_pred CCCC-eeEEEeecCCeEEEEECCC-ceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCe
Q 021399 92 FDSP-ARSVDFAVGDKLAVITTDP-FMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAI 169 (313)
Q Consensus 92 ~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~ 169 (313)
.... ...+...+++.+.+...+. ...++.. +............+..+...+++..++ ++ +.
T Consensus 134 ~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~--------------g~~~~~~~~~~~~~~~~~~d~~g~l~v-~t--~~ 196 (330)
T 3hxj_A 134 TKKAIYATPIVSEDGTIYVGSNDNYLYAINPD--------------GTEKWRFKTNDAITSAASIGKDGTIYF-GS--DK 196 (330)
T ss_dssp CSSCCCSCCEECTTSCEEEECTTSEEEEECTT--------------SCEEEEEECSSCCCSCCEECTTCCEEE-ES--SS
T ss_pred CCCceeeeeEEcCCCEEEEEcCCCEEEEECCC--------------CCEeEEEecCCCceeeeEEcCCCEEEE-Ee--CE
Confidence 3222 2223333345554443322 1111111 112222222233444555666666544 44 77
Q ss_pred EEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCc-eeEEEeccCCCEEE
Q 021399 170 VRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERP-VNAVTMSPLLDHVV 248 (313)
Q Consensus 170 i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~ 248 (313)
|..+| .+++.+-... .....+.++...++|. |..++.++.+..+|. +++.+..+..... ...+...+.+ .+.
T Consensus 197 l~~~d-~~g~~~~~~~---~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~ 269 (330)
T 3hxj_A 197 VYAIN-PDGTEKWNFY---AGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIY 269 (330)
T ss_dssp EEEEC-TTSCEEEEEC---CSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEE
T ss_pred EEEEC-CCCcEEEEEc---cCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEE
Confidence 89999 6665543332 1234577778888875 566777888888874 5666555543322 3334444333 444
Q ss_pred EcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399 249 LGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY 303 (313)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~ 303 (313)
++.. + .-++.+|. .++.. |. +......+.++...++|+.+
T Consensus 270 v~t~-~-ggl~~~d~-~g~~~---~~---------~~~~~~~~~~~~~d~~g~l~ 309 (330)
T 3hxj_A 270 FGSY-D-GHLYAINP-DGTEK---WN---------FETGSWIIATPVIDENGTIY 309 (330)
T ss_dssp EECT-T-CEEEEECT-TSCEE---EE---------EECSSCCCSCCEECTTCCEE
T ss_pred EecC-C-CCEEEECC-CCcEE---EE---------EEcCCccccceEEcCCCEEE
Confidence 4432 2 22444453 23221 11 11123456667777777653
No 256
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.21 E-value=0.0018 Score=54.18 Aligned_cols=215 Identities=11% Similarity=0.039 Sum_probs=119.6
Q ss_pred cccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC--------------------CCCceEEEEECC-C
Q 021399 5 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG--------------------HNGAVWCCDVSR-D 63 (313)
Q Consensus 5 ~l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~--------------------H~~~V~~~~~~~-~ 63 (313)
.+.+......+++++++|.+++++..++.|..|+.++++.. .+.. .......+++.+ +
T Consensus 13 ~~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~ 91 (322)
T 2fp8_A 13 LIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN 91 (322)
T ss_dssp EEECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred ecCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCC
Confidence 34454456788999999997888888999999987765432 2211 013478899997 6
Q ss_pred CCeEEEeeCCCcEEEEECCCCeEEEEec-C----CCCeeEEEeec-CCeEEEEECCCceec----------cccceeeee
Q 021399 64 SMTLITGSADQTAKLWNVETGAQLFTFN-F----DSPARSVDFAV-GDKLAVITTDPFMEL----------NSAIHVKRI 127 (313)
Q Consensus 64 ~~~l~s~s~D~~v~vWd~~~~~~~~~~~-~----~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~~~~~~~~~ 127 (313)
+++++ +...+.+..+|..+++...... . ......+.+.+ ++.+.+......... .....+..+
T Consensus 92 g~l~v-~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 92 NQLYI-VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp TEEEE-EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred CcEEE-EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEE
Confidence 65544 4444558888877654322111 1 12245566666 666555433210000 000111111
Q ss_pred eeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe-eCCCeEEEEECCCCc--eeeecccccCceeceEEEEECCCCC
Q 021399 128 ARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGK--LLKESDKETGHKKTITSLAKAADGS 204 (313)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~-~~d~~i~lwd~~~~~--~~~~~~~~~~h~~~v~~~~~s~~~~ 204 (313)
++. .+. +..+.......+.++++|+++.+..+ ...+.|.++++.... ....+... .. ...+++.++|+
T Consensus 171 --d~~--~~~-~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~ 241 (322)
T 2fp8_A 171 --DPS--TKE-TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGH 241 (322)
T ss_dssp --ETT--TTE-EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSC
T ss_pred --eCC--CCE-EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCC
Confidence 110 011 11111111233568899998855544 566899999986421 11111111 12 67789999998
Q ss_pred EEEEeeC----------CCcEEEEECCCCcEEEEEec
Q 021399 205 HFLTGSL----------DKSAKLWDARTLELIKTYVT 231 (313)
Q Consensus 205 ~l~s~s~----------dg~i~iwd~~~~~~~~~~~~ 231 (313)
..++... .+.|..+|.+ ++.+..+..
T Consensus 242 l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~ 277 (322)
T 2fp8_A 242 FWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPL 277 (322)
T ss_dssp EEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEEC
T ss_pred EEEEecCcccccccCCCccEEEEECCC-CCEEEEEEC
Confidence 7776654 4668888874 677666653
No 257
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.14 E-value=0.00049 Score=57.44 Aligned_cols=203 Identities=14% Similarity=0.101 Sum_probs=118.6
Q ss_pred CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCC-CeeEEE
Q 021399 22 GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS-PARSVD 100 (313)
Q Consensus 22 g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~-~~~~~~ 100 (313)
+..|..++.++.+..+|.+ ++.......+...+.++...++++ +..++.++.+..+|.. ++......... ....+.
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 183 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS 183 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence 4566778888999999988 777777766666666677777776 5556778999999998 77666554322 222333
Q ss_pred eecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCce
Q 021399 101 FAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL 180 (313)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~ 180 (313)
...++.+.+.. .....++ ..+............+.++...+++. +..++.++.|..+|. +++.
T Consensus 184 ~d~~g~l~v~t-~~l~~~d--------------~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~ 246 (330)
T 3hxj_A 184 IGKDGTIYFGS-DKVYAIN--------------PDGTEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTE 246 (330)
T ss_dssp ECTTCCEEEES-SSEEEEC--------------TTSCEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCE
T ss_pred EcCCCEEEEEe-CEEEEEC--------------CCCcEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECC-CCCE
Confidence 33444544443 2222211 11122222222334456666677665 555677788888885 4444
Q ss_pred eeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-CCceeEEEeccCCCEEEEc
Q 021399 181 LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLLDHVVLG 250 (313)
Q Consensus 181 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~ 250 (313)
+..... ....+..+...+++ .|..++.+|.+..+|. +++.+..+.. ...+.++...+++. ++++
T Consensus 247 ~~~~~~---~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~g 311 (330)
T 3hxj_A 247 KWRFKT---GKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFG 311 (330)
T ss_dssp EEEEEC---SSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEE
T ss_pred eEEeeC---CCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEE
Confidence 433221 12223344555565 4777888888999996 6776666543 23355555555544 4443
No 258
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.05 E-value=0.00054 Score=62.41 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=51.6
Q ss_pred CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeE--EEeccC
Q 021399 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNA--VTMSPL 243 (313)
Q Consensus 166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~--~~~~p~ 243 (313)
.++.|..||+.+++.+=+.... ..+..-.....+..++.++.|+.++.||.++++.+-++.....+.+ +.+..+
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~ 539 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQD 539 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEES----SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred CcceEEEEECCCCCEEEEecCC----CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEEC
Confidence 4688999999998865332211 1111111112356788899999999999999999988876544333 555566
Q ss_pred CCEEEE
Q 021399 244 LDHVVL 249 (313)
Q Consensus 244 ~~~~~~ 249 (313)
+.+.++
T Consensus 540 G~qYv~ 545 (582)
T 1flg_A 540 GEQYLG 545 (582)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 654443
No 259
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.03 E-value=0.0098 Score=56.29 Aligned_cols=268 Identities=10% Similarity=0.079 Sum_probs=145.7
Q ss_pred eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEe-cCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~-~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~ 91 (313)
|.++..+++|...+ +..++-+..|+.++++..... ..+...|.++...+++++.+ |..++-+..||..+++......
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECC
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeec
Confidence 78888888887666 555445788888776643321 12356788888877776555 4444458889988765443221
Q ss_pred C--------CCCeeEEEeecCCeEEEEECCCceeccccc-eeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 92 F--------DSPARSVDFAVGDKLAVITTDPFMELNSAI-HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 92 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
. ...+.++.....+.+.++........+... ............. ......|.++...+++. +.
T Consensus 253 ~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~~~~~~~~~~~-------~l~~~~i~~i~~D~~g~-lW 324 (795)
T 4a2l_A 253 SPSNPKSISSNYIRSLAMDSQNRLWIGTFNDLNIYHEGTDSFASYSSNPVENG-------SLSQRSVRSIFMDSQGG-MW 324 (795)
T ss_dssp CTTCTTSCSCSBEEEEEECTTSCEEEEESSCEEEEETTTTEEEEECCCTTSTT-------SCSSSCEEEEEECTTSC-EE
T ss_pred CCCCccccCCCeEEEEEEcCCCCEEEEeCChhheEcCCCCeEEEEecCCCCCC-------CCCCCcEEEEEEeCCcC-EE
Confidence 1 123445544455555555433222221110 0000100000000 01235688888888777 55
Q ss_pred EeeCCCeEEEEECCCCceeeeccc----ccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe--------
Q 021399 163 SAGEDAIVRIWDTETGKLLKESDK----ETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV-------- 230 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~~~~~~~----~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-------- 230 (313)
.|+.++-|..++...... ..... ..-....|.++...++|. |-.|+.++-|..||.++++...-..
T Consensus 325 igt~~~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~ 402 (795)
T 4a2l_A 325 LGTYFGGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARG 402 (795)
T ss_dssp EEESSSCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------C
T ss_pred EEECCCCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccC
Confidence 677777788998755432 11111 011245699999998887 5557777779999988765432211
Q ss_pred -cCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCe
Q 021399 231 -TERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKR 302 (313)
Q Consensus 231 -~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~ 302 (313)
....+.+++..+.+..+.++.... -+..+|...+.+. .+.... .. .....|.++...++|+.
T Consensus 403 l~~~~v~~i~~d~~g~~lWigt~~~--Gl~~~d~~~~~~~--~~~~~~----~~--l~~~~v~~i~~d~~g~l 465 (795)
T 4a2l_A 403 IGSNNIKAVYVDEKKSLVYIGTHAG--GLSILHRNSGQVE--NFNQRN----SQ--LVNENVYAILPDGEGNL 465 (795)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTT--EEEEEETTTCCEE--EECTTT----SC--CSCSCEEEEEECSSSCE
T ss_pred CCCccEEEEEEcCCCCEEEEEeCcC--ceeEEeCCCCcEE--EeecCC----CC--cCCCeeEEEEECCCCCE
Confidence 123467777776665355543211 2445555544432 111100 00 13457888888877775
No 260
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.98 E-value=0.00098 Score=61.73 Aligned_cols=75 Identities=4% Similarity=0.076 Sum_probs=50.1
Q ss_pred eeEEEEccCCCEEEEeeC-CCCeEEEeCCCCcEEEEecCCCCce-EEEEECCCCCeEEEee-CC-----CcEEEEECCCC
Q 021399 13 LTYLKYNKDGDLLFSCAK-DHTPTVWFADNGERLGTYRGHNGAV-WCCDVSRDSMTLITGS-AD-----QTAKLWNVETG 84 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~-d~~i~iw~~~~~~~~~~~~~H~~~V-~~~~~~~~~~~l~s~s-~D-----~~v~vWd~~~~ 84 (313)
..++++.++|+.++.|+. +..+.+||..+.+-...-.-+...- .++++.+++++++.|| .+ ..+.+||+.+.
T Consensus 245 ~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 245 CPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp SCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred cccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 345777889999999984 5689999988775332211111111 2344556899999988 44 57999999887
Q ss_pred eEE
Q 021399 85 AQL 87 (313)
Q Consensus 85 ~~~ 87 (313)
+-.
T Consensus 325 ~W~ 327 (656)
T 1k3i_A 325 TWT 327 (656)
T ss_dssp EEE
T ss_pred cce
Confidence 533
No 261
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.98 E-value=0.013 Score=55.56 Aligned_cols=269 Identities=9% Similarity=0.024 Sum_probs=149.8
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecC-------CCCceEEEEECCCCCeEEEeeCCCcEEEEECC
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRG-------HNGAVWCCDVSRDSMTLITGSADQTAKLWNVE 82 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~-------H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~ 82 (313)
...|.++..+++|.+.+....+| +.+||..+++....... ....|.++...++|++.+ |..+ -+.+||..
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~G-l~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~ 290 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAG-LFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG 290 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSC-EEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred CCeeEEEEEcCCCCEEEEECCCC-eEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence 45678888888887766543444 78889877654332211 135699999988887554 3444 58889988
Q ss_pred CCeEEEEecC--------CCCeeEEEeecCCeEEEEECC-Cceeccccce-eeeeeeCCCCCCCceEEEecCCCCceEEE
Q 021399 83 TGAQLFTFNF--------DSPARSVDFAVGDKLAVITTD-PFMELNSAIH-VKRIARDPADQGGESVLILKGPQGRINRA 152 (313)
Q Consensus 83 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 152 (313)
+++....... ...+.++.....+.+.+++.. .......... .......... . ......|.++
T Consensus 291 ~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~--~------~l~~~~V~~i 362 (795)
T 4a2l_A 291 TDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYK--N------SLSDNVVSCI 362 (795)
T ss_dssp TTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTS--S------SCSCSSEEEE
T ss_pred CCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCC--C------CCCCCeeEEE
Confidence 7765433211 123455555555556555432 2222211110 0001000000 0 0123457788
Q ss_pred EEccCCCEEEEeeCCCeEEEEECCCCceeeeccccc------CceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEE
Q 021399 153 VWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKET------GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELI 226 (313)
Q Consensus 153 ~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~------~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~ 226 (313)
...+++. +..|+.++-|..||..++... ...... .....|.+++..++|..|-.|+.++-|..||.++++..
T Consensus 363 ~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~ 440 (795)
T 4a2l_A 363 VEDKDKN-LWIGTNDGGLNLYNPITQRFT-SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVE 440 (795)
T ss_dssp EECTTSC-EEEEESSSCEEEECTTTCCEE-EECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEE
T ss_pred EECCCCC-EEEEECCCCeEEEcCCCCcEE-EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEE
Confidence 7777776 556787777999998765432 221110 12357899999888885667777778999999887643
Q ss_pred EEEec------CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCC
Q 021399 227 KTYVT------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDG 300 (313)
Q Consensus 227 ~~~~~------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdg 300 (313)
.+.. ...+.++...+.+. +.++.. .+ +..++...+.+... ... .... .-....|.++...++|
T Consensus 441 -~~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~G--l~~~~~~~~~~~~~--~~~--~~~~--~~~~~~i~~i~~d~~g 509 (795)
T 4a2l_A 441 -NFNQRNSQLVNENVYAILPDGEGN-LWLGTL-SA--LVRFNPEQRSFTTI--EKE--KDGT--PVVSKQITTLFRDSHK 509 (795)
T ss_dssp -EECTTTSCCSCSCEEEEEECSSSC-EEEEES-SC--EEEEETTTTEEEEC--CBC--TTCC--BCCCCCEEEEEECTTC
T ss_pred -EeecCCCCcCCCeeEEEEECCCCC-EEEEec-Cc--eeEEeCCCCeEEEc--ccc--cccc--ccCCceEEEEEECCCC
Confidence 3321 23577777766655 444332 22 44555544443211 100 0000 1124578888888888
Q ss_pred Ce
Q 021399 301 KR 302 (313)
Q Consensus 301 k~ 302 (313)
+.
T Consensus 510 ~l 511 (795)
T 4a2l_A 510 RL 511 (795)
T ss_dssp CE
T ss_pred CE
Confidence 76
No 262
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.93 E-value=0.0011 Score=60.30 Aligned_cols=79 Identities=18% Similarity=0.043 Sum_probs=50.2
Q ss_pred CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCcee--EEEeccC
Q 021399 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVN--AVTMSPL 243 (313)
Q Consensus 166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~--~~~~~p~ 243 (313)
.++.|..||..+++.+-+... ...+........+..++.++.|+.++.||.++++.+.++.....+. -+.+.++
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~----~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~ 517 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWE----KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFK 517 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEE----SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEET
T ss_pred CCCeEEEEECCCCCEEEEecC----CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEEC
Confidence 468899999998876544321 1112222222345677889999999999999999998886544332 2334455
Q ss_pred CCEEE
Q 021399 244 LDHVV 248 (313)
Q Consensus 244 ~~~~~ 248 (313)
+...+
T Consensus 518 G~~yv 522 (571)
T 2ad6_A 518 GKQYI 522 (571)
T ss_dssp TEEEE
T ss_pred CEEEE
Confidence 55443
No 263
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.87 E-value=0.0012 Score=54.98 Aligned_cols=180 Identities=7% Similarity=0.115 Sum_probs=109.3
Q ss_pred cccccccccceeEEEEccCCCEEEEee-CCCCeEEEeCCCCcEEE-EecC----CCC--ceEEEEE---CCCCCeEEEee
Q 021399 3 PILMKGHERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGERLG-TYRG----HNG--AVWCCDV---SRDSMTLITGS 71 (313)
Q Consensus 3 ~~~l~~h~~~v~~~~fs~~g~~l~s~s-~d~~i~iw~~~~~~~~~-~~~~----H~~--~V~~~~~---~~~~~~l~s~s 71 (313)
.+.+....-...+.+|++...+|..++ ..+.|..|+...+.... .+.+ .+. .+..+.| .|++++++...
T Consensus 5 ~i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~ 84 (334)
T 2p9w_A 5 QIDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMK 84 (334)
T ss_dssp EEEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEE
T ss_pred eEEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEc
Confidence 456667777778999998666666666 68999999987664332 3332 121 3578899 68877776533
Q ss_pred -------------CCCcEEEEECC---CCeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCC
Q 021399 72 -------------ADQTAKLWNVE---TGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQG 135 (313)
Q Consensus 72 -------------~D~~v~vWd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (313)
.+..+..+|+. +++.++...... .... ...
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~-----------------------~~~~--~~~--------- 130 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEK-----------------------VQDE--FEK--------- 130 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHH-----------------------HHHH--HHH---------
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcc-----------------------cccc--ccc---------
Confidence 25667777776 554332211000 0000 000
Q ss_pred CceEEEecC-CCCceEEEEEccCCCEEEEeeCC-CeEEEEECCCCceeeecccc---cCceeceEEEEECCCCCEEEEee
Q 021399 136 GESVLILKG-PQGRINRAVWGPLNRTIISAGED-AIVRIWDTETGKLLKESDKE---TGHKKTITSLAKAADGSHFLTGS 210 (313)
Q Consensus 136 ~~~~~~~~~-~~~~i~~~~~~~~~~~i~t~~~d-~~i~lwd~~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s 210 (313)
..+ .....+.++..++|+.+++++.. +.|...+..-. .+...... .......+.+++.|+|+.|+...
T Consensus 131 ------~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~ 203 (334)
T 2p9w_A 131 ------KAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG 203 (334)
T ss_dssp ------HHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES
T ss_pred ------cccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeecCCCcccccCcceEEEeCCCCEEEEEc
Confidence 000 01235677788888888888877 87777776532 22221110 11223466889999999888887
Q ss_pred CCCcEEEEECCCC
Q 021399 211 LDKSAKLWDARTL 223 (313)
Q Consensus 211 ~dg~i~iwd~~~~ 223 (313)
..|.+.-+|+++.
T Consensus 204 ~~g~L~~fD~~~p 216 (334)
T 2p9w_A 204 GPRALTAFDVSKP 216 (334)
T ss_dssp SSSSEEEEECSSS
T ss_pred CCCeEEEEcCCCC
Confidence 7999999998853
No 264
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.83 E-value=0.00046 Score=64.98 Aligned_cols=73 Identities=22% Similarity=0.164 Sum_probs=44.9
Q ss_pred EEEEccCCCEEEEeeCC-----CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC---CCcEEEEECCC
Q 021399 151 RAVWGPLNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL---DKSAKLWDART 222 (313)
Q Consensus 151 ~~~~~~~~~~i~t~~~d-----~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~---dg~i~iwd~~~ 222 (313)
.+.|+|+++.|+....+ ..|+++++.++..................+.|+|||++|+..+. ...|.++|+.+
T Consensus 225 ~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 225 EIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred eEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 35688888777766554 36888888765321111000012234567899999999886653 34688889887
Q ss_pred C
Q 021399 223 L 223 (313)
Q Consensus 223 ~ 223 (313)
+
T Consensus 305 ~ 305 (751)
T 2xe4_A 305 G 305 (751)
T ss_dssp C
T ss_pred C
Confidence 5
No 265
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.73 E-value=0.025 Score=51.64 Aligned_cols=71 Identities=11% Similarity=0.066 Sum_probs=51.2
Q ss_pred CCEEEEeeC-CCCeEEEeC-CCCcEEEEecCCCCc-----------eEEEEECCCCCe----EEEeeCCCcEEEEECCCC
Q 021399 22 GDLLFSCAK-DHTPTVWFA-DNGERLGTYRGHNGA-----------VWCCDVSRDSMT----LITGSADQTAKLWNVETG 84 (313)
Q Consensus 22 g~~l~s~s~-d~~i~iw~~-~~~~~~~~~~~H~~~-----------V~~~~~~~~~~~----l~s~s~D~~v~vWd~~~~ 84 (313)
+..++.++. ++.|.-+|. ++++.+.+++-.... ...+++.|.+.. ++.++.|+.+..+|..++
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 456777777 889999999 899998887643221 122455333334 777889999999999999
Q ss_pred eEEEEecC
Q 021399 85 AQLFTFNF 92 (313)
Q Consensus 85 ~~~~~~~~ 92 (313)
+.++....
T Consensus 142 ~~~W~~~~ 149 (599)
T 1w6s_A 142 ETVWKVEN 149 (599)
T ss_dssp CEEEEEEC
T ss_pred CEEEeecC
Confidence 99887653
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.70 E-value=0.016 Score=48.22 Aligned_cols=197 Identities=12% Similarity=0.093 Sum_probs=105.5
Q ss_pred ceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEec----CC-CCceEEEEECC-CCCeEEEeeC------------
Q 021399 12 PLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYR----GH-NGAVWCCDVSR-DSMTLITGSA------------ 72 (313)
Q Consensus 12 ~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~----~H-~~~V~~~~~~~-~~~~l~s~s~------------ 72 (313)
.+..+++++ +|.+++ +...+.+..+|.++++. ..+. +. -.....+++.+ +|++.++-..
T Consensus 81 ~p~gi~~~~~~g~l~v-~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYI-VDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CEEEEEEETTTTEEEE-EETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCceEEEcCCCCcEEE-EECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 478899998 665544 54445577888665532 2221 11 13467899999 8987776432
Q ss_pred -----CCcEEEEECCCCeEEEEecCCCCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCC
Q 021399 73 -----DQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQ 146 (313)
Q Consensus 73 -----D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (313)
++.|..||..+++.............+.+.+++. +.+..... ..+..+...........+.. . ..
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~-------~~I~~~~~~~~~~~~~~~~~-~-~~ 229 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLS-------HQIVKYWLEGPKKGTAEVLV-K-IP 229 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGG-------TEEEEEESSSTTTTCEEEEE-E-CS
T ss_pred cccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCC-------CeEEEEECCCCcCCccceEE-e-CC
Confidence 3678888987766433222112334566777655 33332210 11111111100001111111 1 12
Q ss_pred CceEEEEEccCCCEEEEeeC----------CCeEEEEECCCCceeeecccccCc-eeceEEEEECCCCCEEEEeeCCCcE
Q 021399 147 GRINRAVWGPLNRTIISAGE----------DAIVRIWDTETGKLLKESDKETGH-KKTITSLAKAADGSHFLTGSLDKSA 215 (313)
Q Consensus 147 ~~i~~~~~~~~~~~i~t~~~----------d~~i~lwd~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~s~dg~i 215 (313)
+ ...+++.++|+.+++... .+.|..+|.. ++.+..+....+. -..+..+++ .++...++....+.|
T Consensus 230 g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i 306 (322)
T 2fp8_A 230 N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSV 306 (322)
T ss_dssp S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEE
T ss_pred C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCce
Confidence 2 567888999987766544 4678888874 5655544322211 133555555 456666666667888
Q ss_pred EEEECCC
Q 021399 216 KLWDART 222 (313)
Q Consensus 216 ~iwd~~~ 222 (313)
..++++.
T Consensus 307 ~~~~~~~ 313 (322)
T 2fp8_A 307 GILVYDK 313 (322)
T ss_dssp EEEEC--
T ss_pred EEEeccc
Confidence 8888764
No 267
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.58 E-value=0.025 Score=47.47 Aligned_cols=189 Identities=14% Similarity=0.221 Sum_probs=109.7
Q ss_pred CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC----CC---e-EEEeeC--CCcEEEEEC--CCCeEEE
Q 021399 21 DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD----SM---T-LITGSA--DQTAKLWNV--ETGAQLF 88 (313)
Q Consensus 21 ~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~----~~---~-l~s~s~--D~~v~vWd~--~~~~~~~ 88 (313)
...+++...+.+-+.+||+ +|+.+..+.. +.++.+.+-|+ |+ + ++|.-. +++|.++++ .+++ +.
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 4456777788889999999 8988888864 55666665552 22 2 333333 578999966 3332 11
Q ss_pred EecC-CCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEE--ccC-CC-EEEE
Q 021399 89 TFNF-DSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVW--GPL-NR-TIIS 163 (313)
Q Consensus 89 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~-~~-~i~t 163 (313)
.... ..+. . .....+..+++ +|. +. ++++
T Consensus 115 ~i~~~~~pv-------------------------------~---------------t~~~~pyGlcly~~~~~g~~yafV 148 (355)
T 3amr_A 115 SMTDPDHPI-------------------------------A---------------TAINEVYGFTLYHSQKTGKYYAMV 148 (355)
T ss_dssp ECSCTTSCE-------------------------------E---------------CCCSSCCCEEEEECTTTCCEEEEE
T ss_pred eccccccCc-------------------------------C---------------CCCCCeeEEEEEecCCCCcEEEEE
Confidence 1100 0000 0 00011222333 443 32 4666
Q ss_pred eeCCCeEEEEECC-------CCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECC-----CCcEEEEEec
Q 021399 164 AGEDAIVRIWDTE-------TGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDAR-----TLELIKTYVT 231 (313)
Q Consensus 164 ~~~d~~i~lwd~~-------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~-----~~~~~~~~~~ 231 (313)
...++.+..|++. +.+.++++.. ...+-.+...+....|+.+-.|..|..++.+ +.+.+..+..
T Consensus 149 ~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l----gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~ 224 (355)
T 3amr_A 149 TGKEGEFEQYELKADKNGYISGKKVRAFKM----NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG 224 (355)
T ss_dssp ECSSSEEEEEEEEECTTSCEEEEEEEEEEC----SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS
T ss_pred ECCCCeEEEEEEEeCCCCcccceEEEEecC----CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecC
Confidence 7778999999872 2344555532 2456677788888899999998776666755 3445554432
Q ss_pred C---CceeEEEe--ccCCC-EEEEcccccCceeEeeccC
Q 021399 232 E---RPVNAVTM--SPLLD-HVVLGGGQDASAVTTTDHR 264 (313)
Q Consensus 232 ~---~~~~~~~~--~p~~~-~~~~~~~~~~~~~~~~~~~ 264 (313)
. ..+..+++ .+++. +++++ +.....+.++|..
T Consensus 225 g~l~aDvEGLai~~~~~g~gyLivS-sQG~~s~~Vydr~ 262 (355)
T 3amr_A 225 RHLTRDIEGLTIYYAADGKGYLMAS-SQGNSSYAIYDRQ 262 (355)
T ss_dssp SSBCSCEEEEEEEECGGGCEEEEEE-EGGGTEEEEEESS
T ss_pred CccccCcceEEEEecCCCCEEEEEE-cCCCCEEEEEECC
Confidence 2 35677777 56666 45544 4444556677765
No 268
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.53 E-value=0.027 Score=46.52 Aligned_cols=238 Identities=9% Similarity=0.010 Sum_probs=118.3
Q ss_pred CcEEEEecCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCeEEEEECCCceecccc
Q 021399 42 GERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSA 121 (313)
Q Consensus 42 ~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (313)
.+.+..+... .....++|+++++++++-..++.|..||.... .............+.+.+++.+.+..... ..
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~-----~~ 94 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNA-----DS 94 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECT-----TS
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccC-----Cc
Confidence 3455566433 45678999999987777668899999998764 33333444456677777766665543210 00
Q ss_pred ceeeeeeeCCCCCCCceEEEec-CCCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCc--eeeecc-----cccCceec
Q 021399 122 IHVKRIARDPADQGGESVLILK-GPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK--LLKESD-----KETGHKKT 193 (313)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~--~~~~~~-----~~~~h~~~ 193 (313)
..+..+. .. .+....... ........++..+.+..+++-..++.|..+|...++ ...... .....-..
T Consensus 95 ~~v~~~d--~~--~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~ 170 (306)
T 2p4o_A 95 IPVVSLV--KS--DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPA 170 (306)
T ss_dssp CEEEEEE--CT--TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCS
T ss_pred ceEEEEc--CC--CCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCc
Confidence 0011110 00 111111111 111112333334444444544467889999986542 110000 00011122
Q ss_pred eEEEEECCCCCEEE-EeeCCCcEEEEECCC-CcE--EEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCcee
Q 021399 194 ITSLAKAADGSHFL-TGSLDKSAKLWDART-LEL--IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFE 269 (313)
Q Consensus 194 v~~~~~s~~~~~l~-s~s~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (313)
...+ ++++.+|. +-...+.|..+|++. ++. ...+........+++.+++.. +++... .+.+..++.. ++..
T Consensus 171 pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l-~va~~~-~~~V~~~~~~-G~~~ 245 (306)
T 2p4o_A 171 ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNL-YGATHI-YNSVVRIAPD-RSTT 245 (306)
T ss_dssp EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCE-EEECBT-TCCEEEECTT-CCEE
T ss_pred CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCE-EEEeCC-CCeEEEECCC-CCEE
Confidence 3444 67776554 455678899999875 321 122211223566788887754 444322 2223334432 2211
Q ss_pred eeeeehhhhhhhccccccccceeEEEEC---CCCCeeEE
Q 021399 270 AKFFDKILQEEIGGVKGHFGPINALAFN---PDGKRYGF 305 (313)
Q Consensus 270 ~~~~~~~~~~~~~~~~~h~~~V~~~~fs---pdgk~~~~ 305 (313)
. +..........++++|. ||++.+-.
T Consensus 246 ~----------~~~~~~~~~~p~~~a~~g~~~d~~~LyV 274 (306)
T 2p4o_A 246 I----------IAQAEQGVIGSTAVAFGQTEGDCTAIYV 274 (306)
T ss_dssp E----------EECGGGTCTTEEEEEECCSTTTTTEEEE
T ss_pred E----------EeecccccCCceEEEEecccCCCCEEEE
Confidence 0 00111112457899999 89887643
No 269
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.40 E-value=0.057 Score=47.08 Aligned_cols=154 Identities=11% Similarity=0.092 Sum_probs=80.2
Q ss_pred cceeEEEEcc-CCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeC-CC----cEEEEECCCC
Q 021399 11 RPLTYLKYNK-DGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSA-DQ----TAKLWNVETG 84 (313)
Q Consensus 11 ~~v~~~~fs~-~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~-D~----~v~vWd~~~~ 84 (313)
.....++++| ++..|+.+...+.|+.+|.+.+...... ........++|+++++.++.+.. ++ .+.+.+....
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~-~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~ 215 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVY-SGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG 215 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEE-CCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEe-cCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence 3567899998 4566666665588888998776644333 33455788999999995544443 22 2333332221
Q ss_pred eE-EEEecCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCce-EEEecCCCCceEEEEEccCCC-E
Q 021399 85 AQ-LFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGES-VLILKGPQGRINRAVWGPLNR-T 160 (313)
Q Consensus 85 ~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~ 160 (313)
.. ...+........+.+.+ ++.+.+..... .++..+..+ .... ..........-..++++|+++ .
T Consensus 216 ~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~-------~~V~~~~~~----~~~~~~~~~~~~~~~P~gia~~pdG~~l 284 (430)
T 3tc9_A 216 FKVITELTKGQNCNGAETHPINGELYFNSWNA-------GQVFRYDFT----TQETTPLFTIQDSGWEFHIQFHPSGNYA 284 (430)
T ss_dssp SCSEEEEEECSSCCCEEECTTTCCEEEEETTT-------TEEEEEETT----TTEEEEEEECSSSSCCEEEEECTTSSEE
T ss_pred eeeeeeeccCCCceEEEEeCCCCEEEEEECCC-------CEEEEEECC----CCcEEEEEEcCCCCcceeEEEcCCCCEE
Confidence 10 01111112234455666 44444432211 111111110 1111 111111123456789999999 4
Q ss_pred EEEeeCCCeEEEEECC
Q 021399 161 IISAGEDAIVRIWDTE 176 (313)
Q Consensus 161 i~t~~~d~~i~lwd~~ 176 (313)
+++-...+.|..++..
T Consensus 285 yv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 285 YIVVVNQHYILRSDYD 300 (430)
T ss_dssp EEEETTTTEEEEEEEE
T ss_pred EEEECCCCEEEEEeCC
Confidence 5555677889998754
No 270
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.35 E-value=0.11 Score=49.11 Aligned_cols=237 Identities=9% Similarity=0.027 Sum_probs=128.6
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEe---cCCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEE
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTY---RGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQL 87 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~---~~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~ 87 (313)
..|.++..+++|.+.+ |+.++-+..++..+++..... ......|.++...+++++.+ |..++-+..+|..+++..
T Consensus 363 ~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~ 440 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLWI-GTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ 440 (781)
T ss_dssp SCEEEEEECTTSCEEE-EEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE
T ss_pred cceEEEEEcCCCCEEE-EeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE
Confidence 4588998888887665 554555777887654332111 12346799999887776554 666667888998776543
Q ss_pred EEec---CCCCeeEEEeecCCeEEEEECCCceeccccc-eeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399 88 FTFN---FDSPARSVDFAVGDKLAVITTDPFMELNSAI-HVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (313)
Q Consensus 88 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t 163 (313)
.... ....+.++....++.+.++........+... ........ .. . ......|.++...++++.. .
T Consensus 441 ~~~~~~~~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~-~~--~------~~~~~~i~~i~~d~~g~lW-i 510 (781)
T 3v9f_A 441 IIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDT-SN--S------QLLENFVRSIAQDSEGRFW-I 510 (781)
T ss_dssp ECCSTTTCCCCEEEEEECTTSEEEEEETTEEEEEESSSSSCCEEECT-TT--S------SCSCSCEEEEEECTTCCEE-E
T ss_pred EeccCCCCCCeEEEEEECCCCCEEEEECCceEEEeCCCCeEEecccC-cc--c------ccccceeEEEEEcCCCCEE-E
Confidence 3211 1223444444445565555443222221110 00000000 00 0 0113567788888877754 4
Q ss_pred eeCCCeEEEEECCCCceeeeccccc-CceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-----CCceeE
Q 021399 164 AGEDAIVRIWDTETGKLLKESDKET-GHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-----ERPVNA 237 (313)
Q Consensus 164 ~~~d~~i~lwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~~ 237 (313)
|+.++-|..+|..+++. ..+.... .....|.++...++|...++. .+|-+..||.++++. ..+.. ...+.+
T Consensus 511 gt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~-~~~~~~~gl~~~~i~~ 587 (781)
T 3v9f_A 511 GTFGGGVGIYTPDMQLV-RKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDY-QVFQRKEGLPNTHIRA 587 (781)
T ss_dssp EESSSCEEEECTTCCEE-EEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCC-EEECGGGTCSCCCCCE
T ss_pred EEcCCCEEEEeCCCCeE-EEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcE-EEccccCCCCCceEEE
Confidence 55544477899876543 2222111 124578999999998865544 466548888877653 33321 224667
Q ss_pred EEeccCCCEEEEcccccCceeEeeccCCC
Q 021399 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAG 266 (313)
Q Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 266 (313)
+...+.+. +.+++. .+ +..++...+
T Consensus 588 i~~d~~g~-lW~~t~-~G--l~~~~~~~~ 612 (781)
T 3v9f_A 588 ISEDKNGN-IWASTN-TG--ISCYITSKK 612 (781)
T ss_dssp EEECSSSC-EEEECS-SC--EEEEETTTT
T ss_pred EEECCCCC-EEEEcC-Cc--eEEEECCCC
Confidence 77777665 444432 22 444554443
No 271
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.16 E-value=0.066 Score=42.99 Aligned_cols=199 Identities=11% Similarity=0.112 Sum_probs=114.7
Q ss_pred ccccccceeEEEEccCCCEEEE-eeCCCCeEEEeCCCCcEEEEecC-CCCceEEEEECCCCCeEEEeeCCCcEEEEECCC
Q 021399 6 MKGHERPLTYLKYNKDGDLLFS-CAKDHTPTVWFADNGERLGTYRG-HNGAVWCCDVSRDSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s-~s~d~~i~iw~~~~~~~~~~~~~-H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~ 83 (313)
|.|=.+.+..++|+|+++.|++ ...++.|...|.. ++.+.++.- -......+++.+++.++++.-.++.+.++++..
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~ 100 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTP 100 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECT
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 4455567899999998877765 5567778888887 777776631 124567788888887767655667777777654
Q ss_pred CeEEEEecCCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEE
Q 021399 84 GAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIIS 163 (313)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t 163 (313)
...+.... ...+ . +.. .......-.++|+|.++.+.+
T Consensus 101 ~~~i~~~~------~~~~-----------~-------------~~~-------------~~~N~g~EGLA~d~~~~~L~v 137 (255)
T 3qqz_A 101 NSEVKILK------KIKI-----------P-------------LQE-------------SPTNCGFEGLAYSRQDHTFWF 137 (255)
T ss_dssp TCCEEEEE------EEEC-----------C-------------CSS-------------CCCSSCCEEEEEETTTTEEEE
T ss_pred CCeeeeee------eecc-----------c-------------ccc-------------ccccCCcceEEEeCCCCEEEE
Confidence 32111000 0000 0 000 001223456788888866666
Q ss_pred eeCCCeEEEEECC---CCceeeeccc----ccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCcEEEEEecC---
Q 021399 164 AGEDAIVRIWDTE---TGKLLKESDK----ETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVTE--- 232 (313)
Q Consensus 164 ~~~d~~i~lwd~~---~~~~~~~~~~----~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~--- 232 (313)
+.+.....||... ....+..... ...+-..+.++++.|....+..-| .+..+..+|.+ ++.+..+...
T Consensus 138 a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~ 216 (255)
T 3qqz_A 138 FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGS 216 (255)
T ss_dssp EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTG
T ss_pred EECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCcc
Confidence 6554444444432 1111111100 011234578899998766655555 45677888876 5565555322
Q ss_pred -------CceeEEEeccCCCEEEEc
Q 021399 233 -------RPVNAVTMSPLLDHVVLG 250 (313)
Q Consensus 233 -------~~~~~~~~~p~~~~~~~~ 250 (313)
.....++|.|+++ ++++
T Consensus 217 ~~l~~~~~qpEGia~d~~G~-lyIv 240 (255)
T 3qqz_A 217 RGLSHNIKQAEGVAMDASGN-IYIV 240 (255)
T ss_dssp GGCSSCCCSEEEEEECTTCC-EEEE
T ss_pred CCcccccCCCCeeEECCCCC-EEEE
Confidence 2568999999987 4444
No 272
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.05 E-value=0.1 Score=43.83 Aligned_cols=135 Identities=11% Similarity=0.148 Sum_probs=78.9
Q ss_pred CCeEEEEEC--CCCceeeecccc--c-Cce-eceEEEEE--CCC-CC-EEEEeeCCCcEEEEEC-------CCCcEEEEE
Q 021399 167 DAIVRIWDT--ETGKLLKESDKE--T-GHK-KTITSLAK--AAD-GS-HFLTGSLDKSAKLWDA-------RTLELIKTY 229 (313)
Q Consensus 167 d~~i~lwd~--~~~~~~~~~~~~--~-~h~-~~v~~~~~--s~~-~~-~l~s~s~dg~i~iwd~-------~~~~~~~~~ 229 (313)
+++|++|++ .++. +..+... . +-. ..+..+|+ ++. +. +++....+|.+..|++ .+.+.++++
T Consensus 98 ~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f 176 (355)
T 3amr_A 98 KNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAF 176 (355)
T ss_dssp CCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEe
Confidence 578999955 4443 4444211 0 011 45566666 664 43 6888888999999987 234677888
Q ss_pred ecCCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccc-ccc-ccceeEEEE--CCCCCeeEE
Q 021399 230 VTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGV-KGH-FGPINALAF--NPDGKRYGF 305 (313)
Q Consensus 230 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~V~~~~f--spdgk~~~~ 305 (313)
.....+..++..+....++++--+ .-++.++..-..-. +.+.+..+ .+| ...+-.|++ .++|+.+.|
T Consensus 177 ~lgsq~EgcvvDd~~g~Lyv~eEd--~GIw~~da~p~~~~-------~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLi 247 (355)
T 3amr_A 177 KMNSQTEGMAADDEYGRLYIAEED--EAIWKFSAEPDGGS-------NGTVIDRADGRHLTRDIEGLTIYYAADGKGYLM 247 (355)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETT--TEEEEEECSTTSCS-------CCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEE
T ss_pred cCCCCcceEEEcCCCCeEEEeccc--ceEEEEeCCcCCCC-------CceEEEEecCCccccCcceEEEEecCCCCEEEE
Confidence 777788888888888888886322 22554442211000 00111111 112 235666776 778887777
Q ss_pred EEEEEe
Q 021399 306 LLLQIN 311 (313)
Q Consensus 306 ~~~~~~ 311 (313)
..+|++
T Consensus 248 vSsQG~ 253 (355)
T 3amr_A 248 ASSQGN 253 (355)
T ss_dssp EEEGGG
T ss_pred EEcCCC
Confidence 777764
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.02 E-value=0.13 Score=44.01 Aligned_cols=206 Identities=9% Similarity=-0.053 Sum_probs=112.3
Q ss_pred cceeEEEEccCCCEEEEe-eCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeEEE
Q 021399 11 RPLTYLKYNKDGDLLFSC-AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLF 88 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~-s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~~ 88 (313)
..+..++|++.+..|+-+ ...+.|..++.+.+.....+.........+++.+. ++++++-...+.|.+.+++......
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~ 195 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV 195 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence 346789999766555544 45678888887766544333333334456788864 4555665667788888887544333
Q ss_pred EecC-CCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE-EEee
Q 021399 89 TFNF-DSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAG 165 (313)
Q Consensus 89 ~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~t~~ 165 (313)
.... ......+.+.+. +.+.+..... ...+..+.. +... ............+.++++|.+..| ++=.
T Consensus 196 l~~~~l~~P~giavdp~~g~ly~td~~~------~~~I~r~~~---dG~~-~~~~~~~~~~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 196 LLWQSLEKPRAIALHPMEGTIYWTDWGN------TPRIEASSM---DGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp EECSSCSCEEEEEEETTTTEEEEEECSS------SCEEEEEET---TSCS-CEEEECSSCSCEEEEEEEGGGTEEEEEET
T ss_pred eecCCCCCCcEEEEEcCCCeEEEeccCC------CCEEEEEeC---CCCC-cEEEEECCCCCeeeEEEeCCCCEEEEEEC
Confidence 3322 234566667653 4443332211 011111111 1111 111222223345788999765544 4445
Q ss_pred CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
..+.|..+|+..... +.+.. ........+++. .+..+++-...+.|..+|..+++.+..+.
T Consensus 266 ~~~~I~~~d~dG~~~-~~~~~--~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 266 KHHVIERANLDGSHR-KAVIS--QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp TTTEEEEECTTSCSC-EEEEC--SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCEEEEEeCCCCee-EEEEE--CCCCCceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 667899999764322 22211 112345666663 44556666667888888876776655554
No 274
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.85 E-value=0.21 Score=43.57 Aligned_cols=202 Identities=9% Similarity=0.070 Sum_probs=100.6
Q ss_pred ccceeEEEEccCCCEEEEeeCC---CC-eEEEeCCCCcE-EEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCC
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKD---HT-PTVWFADNGER-LGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d---~~-i~iw~~~~~~~-~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~ 83 (313)
...+..++|+++|+++++-..+ .. +...+...+.. ...+. .-..-..++++| ++.++++-..++.|+.+|..+
T Consensus 181 ~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~ 259 (433)
T 4hw6_A 181 IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPAT 259 (433)
T ss_dssp CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTT
T ss_pred CCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCC
Confidence 4457899999999955554322 11 22222211111 01111 112234578888 677666666778899999987
Q ss_pred CeE-EEEecC--CCCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCCCCC--CceEEEec-C------------
Q 021399 84 GAQ-LFTFNF--DSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPADQG--GESVLILK-G------------ 144 (313)
Q Consensus 84 ~~~-~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~------------ 144 (313)
+.. ...... ......+.+.+++. +.+..... ..++.+..+..... ......-. +
T Consensus 260 g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~-------~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a 332 (433)
T 4hw6_A 260 GTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK-------HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGA 332 (433)
T ss_dssp CCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT-------TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGS
T ss_pred CeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC-------CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccce
Confidence 765 222222 12223577777665 44433221 01111111100000 00000000 0
Q ss_pred CCCceEEEEE---------ccCCCEEEEeeCCCeEEEEECCCCceeeecccc-----cC----------ceeceEEEEEC
Q 021399 145 PQGRINRAVW---------GPLNRTIISAGEDAIVRIWDTETGKLLKESDKE-----TG----------HKKTITSLAKA 200 (313)
Q Consensus 145 ~~~~i~~~~~---------~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~-----~~----------h~~~v~~~~~s 200 (313)
....-..+++ .+.++.+++-...+.|+.++. ++. +.++... .+ .-.....++++
T Consensus 333 ~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd 410 (433)
T 4hw6_A 333 RLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYD 410 (433)
T ss_dssp BCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEE
T ss_pred EEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEE
Confidence 0122345777 666666666667788999985 443 2222211 01 11236788888
Q ss_pred -CCCCEEEEeeCCCcEEEEECC
Q 021399 201 -ADGSHFLTGSLDKSAKLWDAR 221 (313)
Q Consensus 201 -~~~~~l~s~s~dg~i~iwd~~ 221 (313)
++|..+++-...+.|+.++++
T Consensus 411 ~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 411 MKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp TTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCEEEEEeCCCCEEEEEecC
Confidence 667666666666777777654
No 275
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.85 E-value=0.16 Score=42.31 Aligned_cols=259 Identities=9% Similarity=0.083 Sum_probs=125.1
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec----CCCCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeE
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR----GHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQ 86 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~----~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~ 86 (313)
..+.++.|.+++..++ ++.++.| +...+.++.-.... .....+.++.+++ ++.++ ++.++.|.. ..+.++.
T Consensus 36 ~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~t 110 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQS 110 (327)
T ss_dssp SCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSS
T ss_pred CcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCC
Confidence 4678899987777777 4556654 23333343222211 2244688899876 44444 456665433 3333321
Q ss_pred EEEec----CCCCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE
Q 021399 87 LFTFN----FDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII 162 (313)
Q Consensus 87 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~ 162 (313)
=.... .......+.+.+++.+.+......+.... +.+..-..........+..+.+.+.+..++
T Consensus 111 W~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~S~------------DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ 178 (327)
T 2xbg_A 111 WSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYRTK------------DSGKNWQALVQEAIGVMRNLNRSPSGEYVA 178 (327)
T ss_dssp CEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEEES------------STTSSEEEEECSCCCCEEEEEECTTSCEEE
T ss_pred ceECccccCCCCCeEEEEEECCCCEEEEeCCccEEEEc------------CCCCCCEEeecCCCcceEEEEEcCCCcEEE
Confidence 11111 11223444444455554443322110000 001111111223345677888888888777
Q ss_pred EeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec-----CCceeE
Q 021399 163 SAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT-----ERPVNA 237 (313)
Q Consensus 163 t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-----~~~~~~ 237 (313)
.+......+-+|-. +.....+. ......+..+++.+++..+ .++.+|.+++++.+.++....+.. ...+..
T Consensus 179 ~g~~G~~~~S~d~g-G~tW~~~~--~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~ 254 (327)
T 2xbg_A 179 VSSRGSFYSTWEPG-QTAWEPHN--RTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLD 254 (327)
T ss_dssp EETTSSEEEEECTT-CSSCEEEE--CCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEE
T ss_pred EECCCcEEEEeCCC-CCceeECC--CCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEE
Confidence 66554444445531 22222221 1234578888899988754 555678877775332333332221 124677
Q ss_pred EEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCee
Q 021399 238 VTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRY 303 (313)
Q Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~ 303 (313)
+++.|.+..++ ++. ++..+...|.- .-|.... ....+...++++.|.++++.+
T Consensus 255 v~~~~~~~~~~-~g~-~g~i~~S~DgG------~tW~~~~-----~~~~~~~~~~~v~~~~~~~~~ 307 (327)
T 2xbg_A 255 LAYRTPNEVWL-AGG-AGALLCSQDGG------QTWQQDV-----DVKKVPSNFYKILFFSPDQGF 307 (327)
T ss_dssp EEESSSSCEEE-EES-TTCEEEESSTT------SSCEECG-----GGTTSSSCCCEEEEEETTEEE
T ss_pred EEecCCCEEEE-EeC-CCeEEEeCCCC------cccEEcC-----ccCCCCCCeEEEEEECCCceE
Confidence 88887655433 332 33333433421 1232111 001123567788887666543
No 276
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.78 E-value=0.04 Score=51.29 Aligned_cols=208 Identities=12% Similarity=-0.051 Sum_probs=106.7
Q ss_pred cceeEEEEccCCCEEEEe-eCCCCeEEEeCCC----CcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCC
Q 021399 11 RPLTYLKYNKDGDLLFSC-AKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~-s~d~~i~iw~~~~----~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~ 84 (313)
..+..++|++.+..|+-+ ...+.|+.+++.. ......+...-.....+++.+. ++++++-...+.|.+.++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 345678999877666655 3567888888765 2222122211123456787754 456666566788999998765
Q ss_pred eEEEEecC-CCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCC-EE
Q 021399 85 AQLFTFNF-DSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNR-TI 161 (313)
Q Consensus 85 ~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~i 161 (313)
.....+.. ......+.+.+. +.+.+..... ...+..+. .+..... ..........+.++++|.+. .+
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~------~~~I~~~~---~dG~~~~-~l~~~~l~~PnGlavd~~~~~LY 555 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGG---LNGVDIY-SLVTENIQWPNGITLDLLSGRLY 555 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSS------SCCEEBCC---SSSCCCC-EESCSSCSSCCCEEECTTTCCEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCC------CCeEEEEe---CCCCCee-EEEeCCCCCccEEEEeccCCEEE
Confidence 54433322 123344555543 2222221110 00011100 0000111 11111123345788998654 44
Q ss_pred EEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 162 ISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 162 ~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
++-...+.|..+|+.... .+.+......-.....+++..+ ..+++....+.|..+|..+++.+..+.
T Consensus 556 ~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 556 WVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp EEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred EEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 555567789999986422 2222211111123344555444 455566667889999988888777664
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.77 E-value=0.2 Score=42.22 Aligned_cols=205 Identities=9% Similarity=-0.062 Sum_probs=111.3
Q ss_pred ceeEEEEccCCCEEEEe-eCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeEEEE
Q 021399 12 PLTYLKYNKDGDLLFSC-AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQLFT 89 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~-s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~~~~ 89 (313)
.+..++|++....|+-+ ...+.|..++.+.+.....+...-.....+++.+. ++++++-...+.|.+.+++.......
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l 153 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVL 153 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEE
Confidence 35788999766555544 45677888887766543333332334567888864 45556666678899999876543333
Q ss_pred ecC-CCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE-EEeeC
Q 021399 90 FNF-DSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGE 166 (313)
Q Consensus 90 ~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~t~~~ 166 (313)
... ......+.+.| ++.+.+..... ...+..+.. +.. .............+.++++|.+..| ++-..
T Consensus 154 ~~~~l~~P~~iavdp~~g~ly~td~~~------~~~I~r~~~---dG~-~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~ 223 (349)
T 3v64_C 154 LWQSLEKPRAIALHPMEGTIYWTDWGN------TPRIEASSM---DGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAK 223 (349)
T ss_dssp ECTTCSCEEEEEEETTTTEEEEEECSS------SCEEEEEET---TSC-SCEESCCSSCSCEEEEEEETTTTEEEEEETT
T ss_pred EeCCCCCcceEEEecCcCeEEEeccCC------CCEEEEEeC---CCC-CcEEEEECCCCCcceEEEeCCCCEEEEEECC
Confidence 322 23456677776 34444433211 011111110 000 1111111223345788999765554 44456
Q ss_pred CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 167 DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 167 d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
.+.|..+|+.... .+.+.. ........+++. ++..+++-...+.|..+|..+++....+.
T Consensus 224 ~~~I~~~~~dG~~-~~~~~~--~~~~~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 224 HHVIERANLDGSH-RKAVIS--QGLPHPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp TTEEEEEETTSCS-CEEEEC--SSCSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCEEEEEeCCCCc-eEEEEe--CCCCCceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 6789999976432 222211 112345666663 44555565567788888866666555543
No 278
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=96.73 E-value=0.2 Score=41.58 Aligned_cols=207 Identities=12% Similarity=-0.020 Sum_probs=112.3
Q ss_pred cceeEEEEccCCCEEEEe-eCCCCeEEEeCCC----CcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCC
Q 021399 11 RPLTYLKYNKDGDLLFSC-AKDHTPTVWFADN----GERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETG 84 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~-s~d~~i~iw~~~~----~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~ 84 (313)
..+..+.|++++..|+-+ ..++.|..++.+. ......+...-.....+++.+. ++++++-...+.|.+.++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 446789999876555544 4568888888765 2222223322234577888864 455566567789999998765
Q ss_pred eEEEEec-CCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEE-EecCCCCceEEEEEccCCCEE
Q 021399 85 AQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVL-ILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 85 ~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~i 161 (313)
....... .......+.+.| ++.+.+..... ...+.... .+ +.... .....-...+.++++|.+..|
T Consensus 110 ~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~------~~~I~~~~---~d--G~~~~~~~~~~~~~P~gla~d~~~~~l 178 (316)
T 1ijq_A 110 KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT------PAKIKKGG---LN--GVDIYSLVTENIQWPNGITLDLLSGRL 178 (316)
T ss_dssp SEEEEEECTTCCEEEEEEETTTTEEEEEECSS------SCEEEEEE---TT--SCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred ceEEEEECCCCCcceEEeCCCCCEEEEEccCC------CCeEEEEc---CC--CCCeEEEEECCCCCceEEEEeccCCEE
Confidence 4433332 223456677776 44444433211 01111111 01 11111 112223456788999876655
Q ss_pred EE-eeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 162 IS-AGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 162 ~t-~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
.. -...+.|..+|+... ..+.+......-.....+++. .+..+++-...+.|..+|..+++.+..+.
T Consensus 179 Y~~D~~~~~I~~~d~dg~-~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 179 YWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEECCCCeEEEEecCCC-ceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 44 446679999998632 222221111112234566664 35566666667889999987777655553
No 279
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.72 E-value=0.09 Score=44.47 Aligned_cols=101 Identities=11% Similarity=0.063 Sum_probs=58.7
Q ss_pred ceEEEEEccCCCEEEEeeCCCeEEEEECCCCce--eeecccccCceeceEEEEECCC---CCEEE-EeeCC-----CcEE
Q 021399 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKETGHKKTITSLAKAAD---GSHFL-TGSLD-----KSAK 216 (313)
Q Consensus 148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~--~~~~~~~~~h~~~v~~~~~s~~---~~~l~-s~s~d-----g~i~ 216 (313)
.-..++|.|+++.++ +..++.|++++ +++. +..+............++++|+ +..|. +-... +.|.
T Consensus 32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence 456788999998554 56679999998 3331 2221111112356789999998 44444 44332 5677
Q ss_pred EEECCCCc-----EE-EEEec----CCceeEEEeccCCCEEEEccc
Q 021399 217 LWDARTLE-----LI-KTYVT----ERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 217 iwd~~~~~-----~~-~~~~~----~~~~~~~~~~p~~~~~~~~~~ 252 (313)
.++..... .+ ..+.. .+....++|.|++. ++++.+
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G 153 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTG 153 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECC
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEEC
Confidence 78776432 11 11221 12346899999884 555543
No 280
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.68 E-value=0.22 Score=41.47 Aligned_cols=95 Identities=16% Similarity=0.202 Sum_probs=62.1
Q ss_pred CCeEEEEECC---CCceeeecccc--c-C-------ceeceEEEEECCCCCEEEEeeCC-CcEEEEECCCCcEEEEEe-c
Q 021399 167 DAIVRIWDTE---TGKLLKESDKE--T-G-------HKKTITSLAKAADGSHFLTGSLD-KSAKLWDARTLELIKTYV-T 231 (313)
Q Consensus 167 d~~i~lwd~~---~~~~~~~~~~~--~-~-------h~~~v~~~~~s~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~-~ 231 (313)
+..|..+|+. +++.+...... . + .......++..++|+..++++.- +.|...+.+.. .+..+. .
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~-~~~~~~~~ 177 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK-TVSTFAWE 177 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC-CEEEEEEC
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC-EEeeeeec
Confidence 6778899988 66654332211 0 0 11357899999999999999988 88877777644 333322 1
Q ss_pred C------CceeEEEeccCCCEEEEcccccCceeEeeccC
Q 021399 232 E------RPVNAVTMSPLLDHVVLGGGQDASAVTTTDHR 264 (313)
Q Consensus 232 ~------~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 264 (313)
. .-.+.++++|++..+++..+ .+.++.+|.+
T Consensus 178 ~~~~~~~~G~nGIv~~pdg~~Liv~~~--~g~L~~fD~~ 214 (334)
T 2p9w_A 178 SGNGGQRPGYSGITFDPHSNKLIAFGG--PRALTAFDVS 214 (334)
T ss_dssp CCCSSSCCSCSEEEEETTTTEEEEESS--SSSEEEEECS
T ss_pred CCCcccccCcceEEEeCCCCEEEEEcC--CCeEEEEcCC
Confidence 1 12568999999998888765 4445555543
No 281
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=96.64 E-value=0.13 Score=44.87 Aligned_cols=158 Identities=9% Similarity=-0.034 Sum_probs=88.3
Q ss_pred eEEEEECC-CCCeEEEeeCCCcEEEEECCCCeEEEEecCCCCeeEEEeecCCe-EEEEECCCceeccccceeeeeeeCCC
Q 021399 55 VWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDK-LAVITTDPFMELNSAIHVKRIARDPA 132 (313)
Q Consensus 55 V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (313)
-..++++| ++..|+.+...+.|+.+|+.++..............+.+.+++. +.+..... .... .....+..+ .
T Consensus 139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~-~~~~--~~v~~~~~~-g 214 (430)
T 3tc9_A 139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQN-NNDR--PNNYILTRE-S 214 (430)
T ss_dssp CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCS-CTTS--EEEEEEEGG-G
T ss_pred CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCC-Cccc--ceEEEEeCC-C
Confidence 35788987 34445555555889999998876555444445567788887766 44433211 0000 000000000 0
Q ss_pred CCCCceEEEecCCCCceEEEEEcc-CCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCE-EEEee
Q 021399 133 DQGGESVLILKGPQGRINRAVWGP-LNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSH-FLTGS 210 (313)
Q Consensus 133 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-l~s~s 210 (313)
....... +. .......++++| .+..+++-..++.|..++...+.... +... +.......++++|+|++ +++-.
T Consensus 215 ~~~~~~~--l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~-~~~~-~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 215 GFKVITE--LT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP-LFTI-QDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp TSCSEEE--EE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE-EEEC-SSSSCCEEEEECTTSSEEEEEET
T ss_pred ceeeeee--ec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEEc-CCCCcceeEEEcCCCCEEEEEEC
Confidence 0000011 11 112345677898 67766666678899999987654311 1111 11245678999999995 45555
Q ss_pred CCCcEEEEECC
Q 021399 211 LDKSAKLWDAR 221 (313)
Q Consensus 211 ~dg~i~iwd~~ 221 (313)
..+.|..++.+
T Consensus 290 ~~~~I~~~~~d 300 (430)
T 3tc9_A 290 NQHYILRSDYD 300 (430)
T ss_dssp TTTEEEEEEEE
T ss_pred CCCEEEEEeCC
Confidence 67788888765
No 282
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=96.47 E-value=0.25 Score=39.59 Aligned_cols=118 Identities=12% Similarity=0.126 Sum_probs=79.3
Q ss_pred ecCCCCceEEEEEccCCCE-EEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEEC
Q 021399 142 LKGPQGRINRAVWGPLNRT-IISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDA 220 (313)
Q Consensus 142 ~~~~~~~i~~~~~~~~~~~-i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~ 220 (313)
+.+-...+..++++|++.. +++...++.|...|.. ++.++++.. .+ ....-.+++.+++.++++.-.++.+.++++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l-~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL-DF-VKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC-SS-CSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec-CC-CCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 3444567888999987664 4557788899999987 777666532 12 256778888888887676556788888887
Q ss_pred CCCcE---EEEEec-------CCceeEEEeccCCCEEEEcccccCceeEeec
Q 021399 221 RTLEL---IKTYVT-------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTD 262 (313)
Q Consensus 221 ~~~~~---~~~~~~-------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (313)
..... +..... ......++++|.++.++++...+...++.++
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 65432 222221 1224789999999988887544443555555
No 283
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.45 E-value=0.16 Score=45.03 Aligned_cols=104 Identities=14% Similarity=0.156 Sum_probs=60.5
Q ss_pred ceEEEEEccC--CCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEE-------CCCCCEEEEeeCCC-----
Q 021399 148 RINRAVWGPL--NRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAK-------AADGSHFLTGSLDK----- 213 (313)
Q Consensus 148 ~i~~~~~~~~--~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~-------s~~~~~l~s~s~dg----- 213 (313)
....+++.|. ++.+++-...+.|++.|++.+............-.....++| +++|.+|+.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 3467888883 444555454578999999876543322211112335889999 99999666665543
Q ss_pred --cEEEEECCC-CcEE-----EEEecCCceeEEEeccCCCEEEEcc
Q 021399 214 --SAKLWDART-LELI-----KTYVTERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 214 --~i~iwd~~~-~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~ 251 (313)
.|.+.+.+. +... ..+..-...+.++.+|....++++.
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd 265 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNS 265 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEE
T ss_pred CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEE
Confidence 256666443 1211 1222222356778888777766654
No 284
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=96.44 E-value=0.62 Score=43.83 Aligned_cols=264 Identities=11% Similarity=0.007 Sum_probs=141.3
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec--------------CCCCceEEEEECCCCCeEEEeeCCCcE
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR--------------GHNGAVWCCDVSRDSMTLITGSADQTA 76 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~--------------~H~~~V~~~~~~~~~~~l~s~s~D~~v 76 (313)
..|.++..+++|.+.+ |...+-|.+++..+++...... -....|.++...++|. +-.|..++-|
T Consensus 258 ~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl 335 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGI 335 (781)
T ss_dssp CCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCE
T ss_pred ceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeE
Confidence 4688898888887666 4443456778877665321111 1345789999888876 4556667778
Q ss_pred EEEECCCCeEEEEec----------CCCCeeEEEeecCCeEEEEEC-CCceeccccceeeeeeeCCCCCCCceEEEecCC
Q 021399 77 KLWNVETGAQLFTFN----------FDSPARSVDFAVGDKLAVITT-DPFMELNSAIHVKRIARDPADQGGESVLILKGP 145 (313)
Q Consensus 77 ~vWd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (313)
..++..+........ ....+.++....++.+.+++. ......+..... ..... . .....
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~--~~~~~-~-------~~~~~ 405 (781)
T 3v9f_A 336 NFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRV--AIYNK-E-------NRELL 405 (781)
T ss_dssp EEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEE--EECC-------------CC
T ss_pred EEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCe--EEEcc-C-------CCCCC
Confidence 888887654322110 112344444444455555542 222222111100 00000 0 00123
Q ss_pred CCceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 021399 146 QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 225 (313)
Q Consensus 146 ~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 225 (313)
...|.++...+++. +..|+.++-|..+|..+++. ............|.++...++|...+ |+. +-+..+|.++++.
T Consensus 406 ~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~ 481 (781)
T 3v9f_A 406 SNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKF-QIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKV 481 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEE-EECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSC
T ss_pred CcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcE-EEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeE
Confidence 45677777777776 45577767789999876643 22221112346789999988887544 444 5688899887654
Q ss_pred EEEEec------CCceeEEEeccCCCEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCC
Q 021399 226 IKTYVT------ERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPD 299 (313)
Q Consensus 226 ~~~~~~------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspd 299 (313)
..-... ...+.++...+.+.. .++....+ ++.++...+.+. .+... ..+ ....|.++...++
T Consensus 482 ~~~~~~~~~~~~~~~i~~i~~d~~g~l-Wigt~~~G--l~~~~~~~~~~~--~~~~~-----~~l--~~~~i~~i~~d~~ 549 (781)
T 3v9f_A 482 IHHYDTSNSQLLENFVRSIAQDSEGRF-WIGTFGGG--VGIYTPDMQLVR--KFNQY-----EGF--CSNTINQIYRSSK 549 (781)
T ss_dssp CEEECTTTSSCSCSCEEEEEECTTCCE-EEEESSSC--EEEECTTCCEEE--EECTT-----TTC--SCSCEEEEEECTT
T ss_pred EecccCcccccccceeEEEEEcCCCCE-EEEEcCCC--EEEEeCCCCeEE--EccCC-----CCC--CCCeeEEEEECCC
Confidence 322111 235777877776654 33322122 444555444332 12211 111 2457788888888
Q ss_pred CCe
Q 021399 300 GKR 302 (313)
Q Consensus 300 gk~ 302 (313)
|+.
T Consensus 550 g~l 552 (781)
T 3v9f_A 550 GQM 552 (781)
T ss_dssp SCE
T ss_pred CCE
Confidence 775
No 285
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.41 E-value=0.24 Score=41.81 Aligned_cols=103 Identities=11% Similarity=-0.016 Sum_probs=58.8
Q ss_pred CceEEEEEccCCCEEEEeeCCCeEEEEECCCCc-eeeecccccCceeceEEEEECCC----CCEEEEeeC---C----Cc
Q 021399 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGK-LLKESDKETGHKKTITSLAKAAD----GSHFLTGSL---D----KS 214 (313)
Q Consensus 147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~-~~~~~~~~~~h~~~v~~~~~s~~----~~~l~s~s~---d----g~ 214 (313)
.....++|.|+++ ++.+..++.|+++|. +++ .+..+............++++|+ +...++-+. + +.
T Consensus 29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~ 106 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR 106 (354)
T ss_dssp SCEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred CCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence 3456788999987 445566799999974 443 22222111112345789999997 444444432 3 56
Q ss_pred EEEEECCCC--c-----EE-EEEec--CCceeEEEeccCCCEEEEccc
Q 021399 215 AKLWDARTL--E-----LI-KTYVT--ERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 215 i~iwd~~~~--~-----~~-~~~~~--~~~~~~~~~~p~~~~~~~~~~ 252 (313)
|..|+.... . .+ ..+.. .+..+.++|.|++. ++++.+
T Consensus 107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G 153 (354)
T 3a9g_A 107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTG 153 (354)
T ss_dssp EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECC
T ss_pred EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEEC
Confidence 777776543 1 11 11221 12356799999886 555543
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=96.41 E-value=0.4 Score=41.25 Aligned_cols=209 Identities=11% Similarity=-0.040 Sum_probs=114.9
Q ss_pred ccceeEEEEccCCCEEEEee-CCCCeEEEeCCCC----cEEEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCC
Q 021399 10 ERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVET 83 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s-~d~~i~iw~~~~~----~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~ 83 (313)
...+..++|++.+..|+-+. ..+.|+.++.+.. .....+...-.....+++.+ .++++++-...+.|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 44677899998666655554 5677887877642 22223333345667888887 455666666778899999876
Q ss_pred CeEEEEec-CCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 84 GAQLFTFN-FDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
........ ....+..+.+.+ ++.+.+...... ..+.... .+.. .........-...+.+++++.+..|
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~------~~I~~~~---~dG~-~~~~~~~~~l~~P~glavd~~~~~l 260 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP------AKIKKGG---LNGV-DIYSLVTENIQWPNGITLDLLSGRL 260 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSS------CCEEEEE---TTSC-SCEEEECSSCSCEEEEEEETTTTEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCC------CEEEEEe---CCCC-ccEEEEECCCCceEEEEEEeCCCEE
Confidence 65443333 223456677776 344444332110 0111111 0111 1111222223456788999776655
Q ss_pred EEe-eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 162 ISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 162 ~t~-~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
..+ ...+.|..+|+.... .+.+......-.....++.. .+..+.+-...+.|..+|..+++.+..+.
T Consensus 261 Y~aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 261 YWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EEEETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EEEECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 554 456789999985432 22222111122334566663 33455566667889999987877666654
No 287
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=96.19 E-value=0.56 Score=40.80 Aligned_cols=201 Identities=11% Similarity=0.052 Sum_probs=100.2
Q ss_pred cceeEEEEccC--CCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCCeEEEeeCC---Cc-EEEEECCCC
Q 021399 11 RPLTYLKYNKD--GDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSAD---QT-AKLWNVETG 84 (313)
Q Consensus 11 ~~v~~~~fs~~--g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D---~~-v~vWd~~~~ 84 (313)
.....++|+|+ +..|+.+...+.|+.+|.++++... +.........++++++++++++-... .. +...+...+
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence 45678999995 4445555444889999988776543 33344567899999999955554321 11 222222111
Q ss_pred eE-EEEecCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCce--EEEecCCCCceEEEEEccCCC-
Q 021399 85 AQ-LFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGES--VLILKGPQGRINRAVWGPLNR- 159 (313)
Q Consensus 85 ~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~- 159 (313)
.. ............+.+.+ ++.+.+.... ...++.+. +. .+.. .....+....-..++++|+++
T Consensus 218 ~~~~~~~~~~~~P~giavd~~~G~lyv~d~~-------~~~V~~~d--~~--~g~~~~~~~~~~~~~~~~~ia~dpdG~~ 286 (433)
T 4hw6_A 218 FTERLSLCNARGAKTCAVHPQNGKIYYTRYH-------HAMISSYD--PA--TGTLTEEEVMMDTKGSNFHIVWHPTGDW 286 (433)
T ss_dssp TCCEEEEEECSSBCCCEECTTTCCEEECBTT-------CSEEEEEC--TT--TCCEEEEEEECSCCSSCEEEEECTTSSE
T ss_pred eeccccccccCCCCEEEEeCCCCeEEEEECC-------CCEEEEEE--CC--CCeEEEEEeccCCCCCcccEEEeCCCCE
Confidence 00 00111111222333444 3333222111 01111111 00 1111 111111222234689999998
Q ss_pred EEEEeeCCCeEEEEECC--CCcee--eeccc---ccCc---------eeceEEEEE---------CCCCCEEEEeeCCCc
Q 021399 160 TIISAGEDAIVRIWDTE--TGKLL--KESDK---ETGH---------KKTITSLAK---------AADGSHFLTGSLDKS 214 (313)
Q Consensus 160 ~i~t~~~d~~i~lwd~~--~~~~~--~~~~~---~~~h---------~~~v~~~~~---------s~~~~~l~s~s~dg~ 214 (313)
.+++-...+.|+.++.. ++... ..+.. ..+. -.....+++ .++|...++-...+.
T Consensus 287 LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~ 366 (433)
T 4hw6_A 287 AYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT 366 (433)
T ss_dssp EEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE
T ss_pred EEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE
Confidence 44555567889998864 22210 11110 0011 123567888 778877777777788
Q ss_pred EEEEECCCCc
Q 021399 215 AKLWDARTLE 224 (313)
Q Consensus 215 i~iwd~~~~~ 224 (313)
|+.++. ++.
T Consensus 367 I~~~~~-~G~ 375 (433)
T 4hw6_A 367 VRVLTP-EGR 375 (433)
T ss_dssp EEEECT-TSE
T ss_pred EEEECC-CCC
Confidence 999885 443
No 288
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.18 E-value=0.45 Score=39.57 Aligned_cols=217 Identities=7% Similarity=0.002 Sum_probs=107.7
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCC-CcEEEEec---CCCCceEEEEECCCCCeEEEeeCCCcE-EEEECCCC
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADN-GERLGTYR---GHNGAVWCCDVSRDSMTLITGSADQTA-KLWNVETG 84 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~-~~~~~~~~---~H~~~V~~~~~~~~~~~l~s~s~D~~v-~vWd~~~~ 84 (313)
...+..+.|++ +..++ ++.++.| +...+ ++.-.... .+.+.+..+.+.++++.++.+ .++.| +-+| .+
T Consensus 79 ~~~~~~i~~~~-~~~~~-~g~~g~i--~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S~D--gG 151 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWI-VGEPPIM--LHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRTKD--SG 151 (327)
T ss_dssp CCEEEEEEEET-TEEEE-EEETTEE--EEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEESS--TT
T ss_pred CccEEEEEecC-CeEEE-EECCCeE--EEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEEcC--CC
Confidence 34678899986 44444 4555543 33333 44322222 234567788877667666554 45554 2222 22
Q ss_pred eEEE--EecCCCCeeEEEeecCCeEEEEECCCceecccc--ceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCE
Q 021399 85 AQLF--TFNFDSPARSVDFAVGDKLAVITTDPFMELNSA--IHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRT 160 (313)
Q Consensus 85 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 160 (313)
+.=. ..........+.+.+++.++++........... ...+. .+ -......+..+.+.+++..
T Consensus 152 ~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~-----------~~--~~~~~~~~~~~~~~~~g~~ 218 (327)
T 2xbg_A 152 KNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWE-----------PH--NRTTSRRLHNMGFTPDGRL 218 (327)
T ss_dssp SSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCE-----------EE--ECCSSSCEEEEEECTTSCE
T ss_pred CCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCcee-----------EC--CCCCCCccceeEECCCCCE
Confidence 2111 111223455666666665555443321111000 11111 01 1122345677778887765
Q ss_pred EEEeeCCCeEEEEECCCCceeeecccc-cCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec----CCce
Q 021399 161 IISAGEDAIVRIWDTETGKLLKESDKE-TGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT----ERPV 235 (313)
Q Consensus 161 i~t~~~d~~i~lwd~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~ 235 (313)
+ .++.+|.+++.+...++....+... ......+.++++.+++..++.+. +|.+ ++..+.++.-..+.. +..+
T Consensus 219 ~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~ 295 (327)
T 2xbg_A 219 W-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNF 295 (327)
T ss_dssp E-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCC
T ss_pred E-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCe
Confidence 4 4566788877753334444333211 11234588999988877666554 6766 344444544333321 2456
Q ss_pred eEEEeccCCCEEEEc
Q 021399 236 NAVTMSPLLDHVVLG 250 (313)
Q Consensus 236 ~~~~~~p~~~~~~~~ 250 (313)
..+.|.+.. .++++
T Consensus 296 ~~v~~~~~~-~~~~~ 309 (327)
T 2xbg_A 296 YKILFFSPD-QGFIL 309 (327)
T ss_dssp CEEEEEETT-EEEEE
T ss_pred EEEEEECCC-ceEEE
Confidence 778876433 34443
No 289
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=96.12 E-value=0.51 Score=39.68 Aligned_cols=220 Identities=10% Similarity=-0.025 Sum_probs=112.8
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEe
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTF 90 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~ 90 (313)
...|....+++.+++ + ....|+..+++.......+.+. .....++|++.++ ++++-...+.|..+++.........
T Consensus 35 ~~~C~~~~~~~~ll~-~-~~~~I~~i~~~g~~~~~~~~~~-~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~ 111 (349)
T 3v64_C 35 RRSCKALGPEPVLLF-A-NRIDIRQVLPHRSEYTLLLNNL-ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV 111 (349)
T ss_dssp SSCEEESSSCCEEEE-E-CBSCEEEECTTSCCEEEEECSC-SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CCcccccccCceeEe-e-cccceEEEeCCCCeeEEeecCC-CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence 345666556443333 3 3456777777665544344433 3478899997555 4555456788999998876543333
Q ss_pred cC-CCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE-EEeeCC
Q 021399 91 NF-DSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI-ISAGED 167 (313)
Q Consensus 91 ~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i-~t~~~d 167 (313)
.. ......+.+.+ ++.+.+..... ..+..... + +................+++.|.+..+ ++-...
T Consensus 112 ~~~~~~p~glavd~~~g~ly~~d~~~-------~~I~~~~~---d-G~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~ 180 (349)
T 3v64_C 112 STGLESPGGLAVDWVHDKLYWTDSGT-------SRIEVANL---D-GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN 180 (349)
T ss_dssp CSSCSCCCEEEEETTTTEEEEEETTT-------TEEEEEET---T-SCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS
T ss_pred eCCCCCccEEEEecCCCeEEEEcCCC-------CeEEEEcC---C-CCceEEEEeCCCCCcceEEEecCcCeEEEeccCC
Confidence 22 12234455554 34443332211 01111100 0 011112222233455788888865544 444444
Q ss_pred -CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEe-eCCCcEEEEECCCCcEEEEEec-CCceeEEEeccCC
Q 021399 168 -AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTLELIKTYVT-ERPVNAVTMSPLL 244 (313)
Q Consensus 168 -~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~p~~ 244 (313)
+.|...++.... ...+.. ..-.....+++++++..|.-+ ...+.|..+|++.......+.. ......+++ +.
T Consensus 181 ~~~I~r~~~dG~~-~~~~~~--~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav--~~ 255 (349)
T 3v64_C 181 TPRIEASSMDGSG-RRIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV--FE 255 (349)
T ss_dssp SCEEEEEETTSCS-CEESCC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE--ET
T ss_pred CCEEEEEeCCCCC-cEEEEE--CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE--EC
Confidence 789888876432 222211 123357889999866665554 4567799999875332221211 123455555 23
Q ss_pred CEEEEc
Q 021399 245 DHVVLG 250 (313)
Q Consensus 245 ~~~~~~ 250 (313)
+.++.+
T Consensus 256 ~~ly~t 261 (349)
T 3v64_C 256 DSLYWT 261 (349)
T ss_dssp TEEEEE
T ss_pred CEEEEe
Confidence 455554
No 290
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=96.00 E-value=0.64 Score=39.72 Aligned_cols=194 Identities=8% Similarity=-0.024 Sum_probs=102.2
Q ss_pred eeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEec
Q 021399 13 LTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFN 91 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~ 91 (313)
-.|....++ .+|+.+ ....|+..+++.........+ -.....++|++.++ ++++-...+.|..+++..........
T Consensus 79 ~~C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 155 (386)
T 3v65_B 79 RSCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS 155 (386)
T ss_dssp SCEEECSSC-CEEEEE-CBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred CeECCcccc-ceeEee-cCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence 345554553 344433 346778888776554433443 34577899997554 55555567889999988765443332
Q ss_pred CC-CCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE-EeeCC-
Q 021399 92 FD-SPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAGED- 167 (313)
Q Consensus 92 ~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-t~~~d- 167 (313)
.. .....+.+.+ ++.+.+..... ..+... ..+ +................+++.|.+..+. +-...
T Consensus 156 ~~~~~p~glavd~~~g~lY~~d~~~-------~~I~~~---~~d-g~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~ 224 (386)
T 3v65_B 156 TGLESPGGLAVDWVHDKLYWTDSGT-------SRIEVA---NLD-GAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT 224 (386)
T ss_dssp SSCSCCCCEEEETTTTEEEEEETTT-------TEEEEC---BTT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSS
T ss_pred CCCCCccEEEEEeCCCeEEEEcCCC-------CeEEEE---eCC-CCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCC
Confidence 21 2233445553 34443332211 001100 001 1111122222334567888888665544 43344
Q ss_pred CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEe-eCCCcEEEEECCCC
Q 021399 168 AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDARTL 223 (313)
Q Consensus 168 ~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~dg~i~iwd~~~~ 223 (313)
+.|...++..... ..+.. ..-.....+++++++..|..+ +..+.|..+|++..
T Consensus 225 ~~I~r~~~dG~~~-~~~~~--~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 225 PRIEASSMDGSGR-RIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp CEEEEEETTSCSC-EEEEC--SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred CEEEEEeCCCCCc-EEEEE--CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 7888888764322 22111 112356889999766655544 45677888988653
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=95.96 E-value=0.8 Score=40.51 Aligned_cols=62 Identities=10% Similarity=0.058 Sum_probs=40.1
Q ss_pred ceeEEEEccC-CCEEEEe-eCCCCeEEEeCCCCcEEEEecCC---CCceEEEEE-------CCCCCeEEEeeCC
Q 021399 12 PLTYLKYNKD-GDLLFSC-AKDHTPTVWFADNGERLGTYRGH---NGAVWCCDV-------SRDSMTLITGSAD 73 (313)
Q Consensus 12 ~v~~~~fs~~-g~~l~s~-s~d~~i~iw~~~~~~~~~~~~~H---~~~V~~~~~-------~~~~~~l~s~s~D 73 (313)
....++|+|. ...|+.+ ...+.|++.|.+++.+...+..- -.....++| +++++.++.+...
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~ 213 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDY 213 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCC
Confidence 4678999983 4444444 44467888888877665444332 234788999 9999855555443
No 292
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=95.82 E-value=1.3 Score=41.81 Aligned_cols=208 Identities=12% Similarity=-0.044 Sum_probs=109.7
Q ss_pred ccceeEEEEccCCCEEE-EeeCCCCeEEEeCCCC----cEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECCC
Q 021399 10 ERPLTYLKYNKDGDLLF-SCAKDHTPTVWFADNG----ERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVET 83 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~-s~s~d~~i~iw~~~~~----~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~ 83 (313)
...+..++|++....|+ +-...+.|+.++++.. .....+...-.....|++.+.+ +++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 34567889988655554 4445577877777642 2223333334456678888766 4556656778999999886
Q ss_pred CeEEEEec-CCCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEE
Q 021399 84 GAQLFTFN-FDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTI 161 (313)
Q Consensus 84 ~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i 161 (313)
........ .......+.+.+. +.+.+...... ..+.... .+ +......+.......+.+++.+.+..|
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~------~~I~~~~---~d-G~~~~~lv~~~l~~P~GLavD~~~~~L 572 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP------AKIKKGG---LN-GVDIYSLVTENIQWPNGITLDLLSGRL 572 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSS------CEEEEEE---TT-SCCEEEEECSSCSCEEEEEEETTTTEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCC------CeEEEEe---cC-CCceEEEEeCCCCCceEEEEecCCCeE
Confidence 65443332 2234566777664 44444332110 0111111 11 111122222233456778888766555
Q ss_pred EEe-eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE
Q 021399 162 ISA-GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (313)
Q Consensus 162 ~t~-~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (313)
..+ .....|...++.... ...+....+.-....+|++.. +..+++-...+.|...|..+++.+..+
T Consensus 573 YwaD~~~~~I~~~d~dG~~-~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 573 YWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEeCCCCcEEEEecCCCc-eEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 444 456789999885432 222211111122345666643 244445555677888887777655544
No 293
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.72 E-value=0.78 Score=38.56 Aligned_cols=107 Identities=13% Similarity=0.060 Sum_probs=60.9
Q ss_pred CCCceEEEEEccCCCEEEEeeCCCeEEEEECCCCce--eeecc-cccCceeceEEEEECCC----CCEEEEee--CCCcE
Q 021399 145 PQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESD-KETGHKKTITSLAKAAD----GSHFLTGS--LDKSA 215 (313)
Q Consensus 145 ~~~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~--~~~~~-~~~~h~~~v~~~~~s~~----~~~l~s~s--~dg~i 215 (313)
.-..-..++|.|+++.+++--..|.|++++...++. +..+. ...........++++|+ +...++-+ .++.|
T Consensus 30 gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v 109 (347)
T 3das_A 30 GLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRI 109 (347)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEE
T ss_pred CCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEE
Confidence 344567888999998666654489999998765443 21111 11123456889999995 44444322 34455
Q ss_pred EEEECCCC----------cEE-EEEec--CCceeEEEeccCCCEEEEccc
Q 021399 216 KLWDARTL----------ELI-KTYVT--ERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 216 ~iwd~~~~----------~~~-~~~~~--~~~~~~~~~~p~~~~~~~~~~ 252 (313)
.-|.+... +.+ ..+.. .+....++|.|++. ++++.|
T Consensus 110 ~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~-Lyvt~G 158 (347)
T 3das_A 110 VRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM-LYAGTG 158 (347)
T ss_dssp EEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-EEEECB
T ss_pred EEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-EEEEEC
Confidence 55554431 111 12221 23456799999885 555544
No 294
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.42 E-value=0.96 Score=37.63 Aligned_cols=214 Identities=10% Similarity=0.025 Sum_probs=117.6
Q ss_pred EEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCC-CeEEEEecC
Q 021399 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVET-GAQLFTFNF 92 (313)
Q Consensus 15 ~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~-~~~~~~~~~ 92 (313)
+.-.+|..+.||--. ...+.|+|+++...++.+.-.+ .|.-=.|-.+.. -|+| +..|.-|+++. ..++..+..
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e-~VvfWkWis~~~L~lVT---~taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS-CEEEEEECSSSEEEEEE---SSEEEEEESSTTCCCEEEEEC
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCC-ccEEEEecCCCeEEEEc---CCcEEEEcccCCCCCceeeec
Confidence 456788888888776 6889999999999888777644 554445543333 3444 34799999974 334444432
Q ss_pred -----CCCeeEEEeecCCeEEEEEC--CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc--cC-CCEEE
Q 021399 93 -----DSPARSVDFAVGDKLAVITT--DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG--PL-NRTII 162 (313)
Q Consensus 93 -----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~~~i~ 162 (313)
...+......++.+.+++.. .....+.+.++++... ......++||-+....+... +. ...|+
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-------r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~ 218 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-------RKVSQPIEGHAASFAQFKMEGNAEESTLFC 218 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-------TTEEEEECCSEEEEEEECCTTCSSCEEEEE
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec-------ccccceeeeeeeeeEEEecCCCCCCceEEE
Confidence 22333444445555443321 1111222333333221 22344556665433222221 11 12333
Q ss_pred EeeC---CCeEEEEECCCC---c-ee-----eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 163 SAGE---DAIVRIWDTETG---K-LL-----KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 163 t~~~---d~~i~lwd~~~~---~-~~-----~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
.+.. .++++|.++... . .. .-+.....-.+-.-++..++.-..+..-+.-|.|.+||++|+.++..-.
T Consensus 219 fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~~nr 298 (365)
T 2xzh_A 219 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 298 (365)
T ss_dssp EEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEEEec
Confidence 3332 268999998432 1 11 0011111223334566667777788888999999999999999987754
Q ss_pred c-CCceeEEEe
Q 021399 231 T-ERPVNAVTM 240 (313)
Q Consensus 231 ~-~~~~~~~~~ 240 (313)
- ...+...+-
T Consensus 299 IS~d~iF~ta~ 309 (365)
T 2xzh_A 299 ISGETIFVTAP 309 (365)
T ss_dssp CCSSCEEEEEE
T ss_pred cCCCceEEecc
Confidence 2 344544443
No 295
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.36 E-value=0.5 Score=39.84 Aligned_cols=104 Identities=11% Similarity=0.018 Sum_probs=56.7
Q ss_pred ceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeeccc----ccCceeceEEEEECCC----CCEEEEeeC-------C
Q 021399 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESDK----ETGHKKTITSLAKAAD----GSHFLTGSL-------D 212 (313)
Q Consensus 148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~~----~~~h~~~v~~~~~s~~----~~~l~s~s~-------d 212 (313)
.-..++|.|+++.++.+...+.|++++.. +.....+.. ..........++++|+ +...++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 34678899999834445667999999853 322111110 0112345689999995 544444333 2
Q ss_pred CcEEEEECCCC--c--EEEEEec--------CCceeEEEeccCCCEEEEcccc
Q 021399 213 KSAKLWDARTL--E--LIKTYVT--------ERPVNAVTMSPLLDHVVLGGGQ 253 (313)
Q Consensus 213 g~i~iwd~~~~--~--~~~~~~~--------~~~~~~~~~~p~~~~~~~~~~~ 253 (313)
..|.-|++... . ....+.. .+....++|.|++ .++++.++
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd 149 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGE 149 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECC
Confidence 24555665432 1 1122211 1224679999988 56665443
No 296
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.30 E-value=1.1 Score=37.66 Aligned_cols=100 Identities=9% Similarity=0.041 Sum_probs=59.6
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE--EEEec---CCCCceEEEEECCC---C-CeEEEeeCC-----Cc
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYR---GHNGAVWCCDVSRD---S-MTLITGSAD-----QT 75 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~--~~~~~---~H~~~V~~~~~~~~---~-~~l~s~s~D-----~~ 75 (313)
-.....++|.|+|.++++ ..++.|++++ +++. +..+. .-......++++|+ + .+.++-... +.
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 445689999999986664 5668888887 4432 22221 22346788999998 4 444444432 56
Q ss_pred EEEEECCCCe-----EEEE-ecC----CCCeeEEEeecCCeEEEEEC
Q 021399 76 AKLWNVETGA-----QLFT-FNF----DSPARSVDFAVGDKLAVITT 112 (313)
Q Consensus 76 v~vWd~~~~~-----~~~~-~~~----~~~~~~~~~~~~~~~~~~~~ 112 (313)
|..++...+. .+.. +.. .+....+.|.+++.+.+...
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 7778876431 1111 221 12345777888776665543
No 297
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.22 E-value=1 Score=36.65 Aligned_cols=66 Identities=17% Similarity=0.213 Sum_probs=37.0
Q ss_pred CCCEEEEeeCC-----CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC-----CcEEEEECCCCcE
Q 021399 157 LNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLEL 225 (313)
Q Consensus 157 ~~~~i~t~~~d-----~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----g~i~iwd~~~~~~ 225 (313)
+++.++.||.+ ..+.++|+.+.+ ...+.........-.++.+ ++..++.|+.+ ..+.+||+++.+-
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 234 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGH-WTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSW 234 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCc-EEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcE
Confidence 45667777654 458899987654 2222111111111222222 56777888764 4688999987643
No 298
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.38 E-value=2 Score=36.17 Aligned_cols=57 Identities=14% Similarity=0.273 Sum_probs=36.9
Q ss_pred eceEEEEECCCCCEEEEee-CCCcEEEEECCC-CcE--EEEEecCCceeEEEecc-CCCEEE
Q 021399 192 KTITSLAKAADGSHFLTGS-LDKSAKLWDART-LEL--IKTYVTERPVNAVTMSP-LLDHVV 248 (313)
Q Consensus 192 ~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~-~~~--~~~~~~~~~~~~~~~~p-~~~~~~ 248 (313)
...+.++|+||++.++.+. ..+.|..|+++. ++. .+.+........+++.+ +|...+
T Consensus 221 ~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 221 DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEE
T ss_pred cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEeCCCCcEEE
Confidence 3468899999998776654 577899999863 332 22333344556777777 465433
No 299
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=94.35 E-value=1.9 Score=35.68 Aligned_cols=205 Identities=9% Similarity=-0.012 Sum_probs=108.7
Q ss_pred ceeEEEEccCCCEEE-EeeCCCCeEEEeCCCCcEE-EEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399 12 PLTYLKYNKDGDLLF-SCAKDHTPTVWFADNGERL-GTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLF 88 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~-s~s~d~~i~iw~~~~~~~~-~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~~~~~~ 88 (313)
.+..+.|++.+..|+ +-...+.|..++.+.+... ..+...-.....+++.+ .++++++-...+.|.+.+++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 355788887554444 4445677887877655321 12222223455678876 45555665667889999987644333
Q ss_pred Ee-cCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEE-Eee
Q 021399 89 TF-NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTII-SAG 165 (313)
Q Consensus 89 ~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~-t~~ 165 (313)
.. ........+.+.+ ++.+.+..... ...+..+.. +... ........-..-+.++++|.+..|. +=.
T Consensus 116 l~~~~~~~P~giavdp~~g~ly~td~~~------~~~I~r~~~---dG~~-~~~~~~~~l~~Pnglavd~~~~~lY~aD~ 185 (318)
T 3sov_A 116 LFWQELDQPRAIALDPSSGFMYWTDWGE------VPKIERAGM---DGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADA 185 (318)
T ss_dssp EECSSCSSEEEEEEEGGGTEEEEEECSS------SCEEEEEET---TSCS-CEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCccEEEEeCCCCEEEEEecCC------CCEEEEEEc---CCCC-eEEEEECCCCCccEEEEeccCCEEEEEEC
Confidence 22 2223455666665 34444432210 011111110 1111 1111122223457889998655554 445
Q ss_pred CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
..+.|..+|+.... .+.+.. +.......+++.. +..+.+-...+.|..+|..+++....+.
T Consensus 186 ~~~~I~~~d~dG~~-~~~~~~--~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 186 KLNFIHKSNLDGTN-RQAVVK--GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp TTTEEEEEETTSCS-CEEEEC--SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCEEEEEcCCCCc-eEEEec--CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 67889999986322 222211 1223455666653 3455565567889999988877655554
No 300
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=94.34 E-value=2.4 Score=36.82 Aligned_cols=216 Identities=10% Similarity=0.040 Sum_probs=118.7
Q ss_pred EEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEE-CCCCCeEEEeeCCCcEEEEECCCC-eEEEEecC
Q 021399 15 YLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDV-SRDSMTLITGSADQTAKLWNVETG-AQLFTFNF 92 (313)
Q Consensus 15 ~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~-~~~~~~l~s~s~D~~v~vWd~~~~-~~~~~~~~ 92 (313)
+.-.+|..+.|+--. ...+.|+|+++...++.+.-.+. |.-=.| +++.--++| +..|.-|+++.. .++..+..
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~-VvfWkWis~~~l~lVT---~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC-CCEEEEEETTEEEEEC---SSEEEEEESSSSCCCEEEEEC
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC-ceEEEecCCCeEEEEc---CCeeEEecccCCCCchhheec
Confidence 466788888887765 78999999999998888776554 433344 443223343 357999999642 34444432
Q ss_pred -----CCCeeEEEeecCCeEEEEEC--CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccC---CCEEE
Q 021399 93 -----DSPARSVDFAVGDKLAVITT--DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPL---NRTII 162 (313)
Q Consensus 93 -----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~i~ 162 (313)
...+......++.+.+++.. ..-..+.+.+.++... ......++||-+....+..... ...++
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-------r~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~ 217 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-------RKVSQPIEGHAASFAQFKMEGNAEESTLFC 217 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST-------TCCEEEECCSEEEEEEEECTTCSSEEEEEE
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc-------ccccchheeeeeeeEEEecCCCCCCceEEE
Confidence 22333444445555443321 0001222333333322 1233455666544433332211 12344
Q ss_pred EeeC---CCeEEEEECCCC---c-ee----ee-cccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 163 SAGE---DAIVRIWDTETG---K-LL----KE-SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 163 t~~~---d~~i~lwd~~~~---~-~~----~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
.+.. .++++|.++... . .. .. +.....-.+-.-++..++.-..+..-+.-|.|.++|++|+.++..-.
T Consensus 218 fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nr 297 (494)
T 1bpo_A 218 FAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (494)
T ss_dssp EEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeec
Confidence 4433 378999998532 0 11 01 11111223335566777777888889999999999999999987754
Q ss_pred c-CCceeEEEecc
Q 021399 231 T-ERPVNAVTMSP 242 (313)
Q Consensus 231 ~-~~~~~~~~~~p 242 (313)
- ...+...+-+.
T Consensus 298 Is~~~iF~t~~~~ 310 (494)
T 1bpo_A 298 ISGETIFVTAPHE 310 (494)
T ss_dssp CCSSCEEEEEEET
T ss_pred ccCCceEEecccC
Confidence 2 33455444433
No 301
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.15 E-value=0.48 Score=36.95 Aligned_cols=66 Identities=8% Similarity=-0.037 Sum_probs=39.6
Q ss_pred cceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE------EEEec--CCCCceEEEEECCCCCeEEEeeCCCcEEEEEC
Q 021399 11 RPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER------LGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKLWNV 81 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~------~~~~~--~H~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~ 81 (313)
..+..++|+|+|.+.+. .+|.+.--+..+... -..+- +-.. -.++.|.|+|.+.++ .||.|.-|+.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCC
Confidence 36779999999986665 556544444323111 01110 1111 257889999987776 6698887775
No 302
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=93.72 E-value=4 Score=37.26 Aligned_cols=205 Identities=10% Similarity=-0.026 Sum_probs=104.6
Q ss_pred ccceeEEEEccCCCEEEEee-CCCCeEEEeCCCCcE-EEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeE
Q 021399 10 ERPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNGER-LGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQ 86 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s-~d~~i~iw~~~~~~~-~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~ 86 (313)
.+.+..+.|++.+..|+-+. ..+.|..++.+.... ...+..--.....+++.+.++ ++++-...+.|.+.++.....
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~ 118 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR 118 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE
Confidence 34466788888666666554 356677777664432 223333235678899988544 555556678999999876543
Q ss_pred EEEe-cCCCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe
Q 021399 87 LFTF-NFDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 87 ~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~ 164 (313)
.... ..-..+..+.+.+. +.+.+..... ...+.... .+..... ......-...+.+++++.+..|..+
T Consensus 119 ~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~------~~~I~r~~---~dG~~~~-~l~~~~~~~P~Glald~~~~~LY~a 188 (619)
T 3s94_A 119 KVLFWQELDQPRAIALDPSSGFMYWTDWGE------VPKIERAG---MDGSSRF-IIINSEIYWPNGLTLDYEEQKLYWA 188 (619)
T ss_dssp EEEECSSCSCCCCEEEETTTTEEEEEECSS------SCEEEEEE---TTSCSCE-EEECSSCSSEEEEEEETTTTEEEEE
T ss_pred EEEEeCCCCCCceEEEecCCCeEEEeccCC------CCEEEEEE---CCCCceE-EEEeCCCCCCcEEEEEccCCEEEEE
Confidence 3322 22233445666653 3443332110 00111111 1111111 1122223345778888765555444
Q ss_pred -eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEE
Q 021399 165 -GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKT 228 (313)
Q Consensus 165 -~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 228 (313)
...+.|...|+.... .+.+.. +.......+++..+ ..+.+-...+.|...|..+++....
T Consensus 189 D~~~~~I~~~~~dG~~-~~~~~~--~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 189 DAKLNFIHKSNLDGTN-RQAVVK--GSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp ETTTCCEEEESSSCCE-EC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred eCCCCeEEEecCCCCc-cEEEEe--CCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence 456778888875432 222211 11223346666655 4555555678899999887754433
No 303
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.68 E-value=1.7 Score=37.51 Aligned_cols=101 Identities=11% Similarity=0.031 Sum_probs=65.9
Q ss_pred ceEEEEEccCCCEEEEeeCCCeEEEEECCCCce----------ee--eccc--cc-CceeceEEEEECCC---CCEEEEe
Q 021399 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKL----------LK--ESDK--ET-GHKKTITSLAKAAD---GSHFLTG 209 (313)
Q Consensus 148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~----------~~--~~~~--~~-~h~~~v~~~~~s~~---~~~l~s~ 209 (313)
.+..+..+|+|+++|..+ +..|.|..+..+.. ++ .+.. .. .....|..+.|+|- +..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 567788999999988876 45788888763321 11 1110 00 02467999999985 5589999
Q ss_pred eCCCcEEEEECCCC--cEEEEEe------c----CCceeEEEeccCCCEEEEc
Q 021399 210 SLDKSAKLWDARTL--ELIKTYV------T----ERPVNAVTMSPLLDHVVLG 250 (313)
Q Consensus 210 s~dg~i~iwd~~~~--~~~~~~~------~----~~~~~~~~~~p~~~~~~~~ 250 (313)
..|++||+||+... ++. .+. . ...+.+++|.+++=.+++.
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl 197 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCL 197 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEE
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEE
Confidence 99999999999852 222 221 1 1356778888766555553
No 304
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=93.32 E-value=3.6 Score=35.51 Aligned_cols=163 Identities=13% Similarity=0.112 Sum_probs=91.8
Q ss_pred ccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCC----CCceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEecCCC
Q 021399 19 NKDGDLLFSCAKDHTPTVWFADNGERLGTYRGH----NGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDS 94 (313)
Q Consensus 19 s~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H----~~~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~~~~ 94 (313)
..+|..|+.+- +..||.-++.+....+.++-- -+.|..+..+|+|++|+..+. ..|.|-.+..+... ..
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~-----~~ 101 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSN-----VE 101 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSC-----CC
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCcccc-----Cc
Confidence 45666666544 467787677755445555432 125778999999998887654 47777776532100 00
Q ss_pred CeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCC---CEEEEeeCCCeEE
Q 021399 95 PARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLN---RTIISAGEDAIVR 171 (313)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~i~t~~~d~~i~ 171 (313)
.. ......+.....-++. . ..+..+|..+.|+|.+ ..+++-..|+.||
T Consensus 102 ~~--------------------~~~~~~q~~ty~l~~~-----~----~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir 152 (452)
T 3pbp_A 102 DV--------------------SIQDAFQIFHYSIDEE-----E----VGPKSSIKKVLFHPKSYRDSCIVVLKEDDTIT 152 (452)
T ss_dssp CH--------------------HHHHTTEEEEEEGGGC-----C------CCCCEEEEEECTTBGGGCEEEEEETTSCEE
T ss_pred cc--------------------ccccccceeEEEcCCc-----c----cCCCCceeEEEeccccCCCCeEEEEecCCEEE
Confidence 00 0000000000000000 0 1135678999999875 5789999999999
Q ss_pred EEECCCCc--e--eeec---ccccCceeceEEEEECCCCCEEEEee--CCCcEEE
Q 021399 172 IWDTETGK--L--LKES---DKETGHKKTITSLAKAADGSHFLTGS--LDKSAKL 217 (313)
Q Consensus 172 lwd~~~~~--~--~~~~---~~~~~h~~~v~~~~~s~~~~~l~s~s--~dg~i~i 217 (313)
+||+.... + +.+. .........+.+++|.+++=.|...+ ..|-|+-
T Consensus 153 ~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 153 MFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp EEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred EEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 99987522 1 1111 01122336788999998766565544 6677653
No 305
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.10 E-value=3 Score=33.88 Aligned_cols=65 Identities=6% Similarity=0.078 Sum_probs=38.2
Q ss_pred CCCEEEEeeCC----CCeEEEeCCCCcEEE--EecCCCCceEEEEECCCCCeEEEeeCC------CcEEEEECCCCeEE
Q 021399 21 DGDLLFSCAKD----HTPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSAD------QTAKLWNVETGAQL 87 (313)
Q Consensus 21 ~g~~l~s~s~d----~~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D------~~v~vWd~~~~~~~ 87 (313)
+++.++.|+.+ ..+.+||..+.+-.. .+..-...-.++.+ ++++++.||.+ ..+.+||+.+.+=.
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~ 131 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWH 131 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceE
Confidence 66777777755 556778888775322 12111111122222 57778888765 56889998877533
No 306
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=92.85 E-value=3.2 Score=33.60 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=35.4
Q ss_pred CCCEEEEeeCC-------CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC-----CcEEEEECCCCc
Q 021399 157 LNRTIISAGED-------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLE 224 (313)
Q Consensus 157 ~~~~i~t~~~d-------~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----g~i~iwd~~~~~ 224 (313)
++..++.||.+ ..+.+||+.+.+ ...+.........-.++.+ ++..++.|+.+ ..+.+||+++.+
T Consensus 155 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 231 (302)
T 2xn4_A 155 GGLLYAVGGYDVASRQCLSTVECYNATTNE-WTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNA 231 (302)
T ss_dssp TTEEEEECCEETTTTEECCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCCccccEEEEEeCCCCc-EEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCC
Confidence 45566666542 358899987654 2222111111111122222 56778888765 368889998754
No 307
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=92.52 E-value=6.2 Score=36.09 Aligned_cols=199 Identities=8% Similarity=-0.041 Sum_probs=109.2
Q ss_pred cceeEEEEccCCCEEEEe-eCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCC-CeEEEeeCCCcEEEEECCCCeEEE
Q 021399 11 RPLTYLKYNKDGDLLFSC-AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDS-MTLITGSADQTAKLWNVETGAQLF 88 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~-s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~s~D~~v~vWd~~~~~~~~ 88 (313)
..+..+.|++.+..|+-+ ..++.|..++.+.......+..--.....+++.+.+ +++++-...+.|.+-++.......
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~ 116 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV 116 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE
Confidence 456789999876666654 456788888876554333333322445678887654 455555567889999987654322
Q ss_pred Ee-cCCCCeeEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe-e
Q 021399 89 TF-NFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-G 165 (313)
Q Consensus 89 ~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~-~ 165 (313)
.. ..-..+..+.+.| .+.+.+..... ...+.... .+.....+ +.......+.+++++.++.|..+ .
T Consensus 117 l~~~~l~~P~~iavdp~~G~lY~tD~g~------~~~I~r~~---~dG~~~~~--l~~~~~~P~GlalD~~~~~LY~aD~ 185 (628)
T 4a0p_A 117 LVWKDLDSPRALALDPAEGFMYWTEWGG------KPKIDRAA---MDGSERTT--LVPNVGRANGLTIDYAKRRLYWTDL 185 (628)
T ss_dssp EECSSCCCEEEEEEETTTTEEEEEECSS------SCEEEEEE---TTSCSCEE--EECSCSSEEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCcccEEEccCCCeEEEeCCCC------CCEEEEEe---CCCCceEE--EECCCCCcceEEEccccCEEEEEEC
Confidence 22 2223456777776 34444432210 01111111 11111111 11233456788898875555444 5
Q ss_pred CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcE
Q 021399 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLEL 225 (313)
Q Consensus 166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~ 225 (313)
..+.|...|+..... ..+.. .-.....+++.. +..+.+-...+.|...|..+++.
T Consensus 186 ~~~~I~~~d~dG~~~-~v~~~---~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 186 DTNLIESSNMLGLNR-EVIAD---DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp TTTEEEEEETTSCSC-EEEEE---CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred CCCEEEEEcCCCCce-EEeec---cCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 667899999864332 22211 122345666654 44555555578888888776654
No 308
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=92.06 E-value=8.1 Score=36.41 Aligned_cols=181 Identities=7% Similarity=-0.071 Sum_probs=93.2
Q ss_pred CCCCeEEEeCCCCcEEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCC----eEEEEec-CCCCeeEEEeec
Q 021399 30 KDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETG----AQLFTFN-FDSPARSVDFAV 103 (313)
Q Consensus 30 ~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~----~~~~~~~-~~~~~~~~~~~~ 103 (313)
....|+..++.......... ....+.+++|++. +.++++-...+.|+.+++... .....+. .......+++..
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~ 480 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 480 (791)
T ss_dssp CBSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEET
T ss_pred cccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeee
Confidence 34567777776554433333 3456778999875 445566566788998988753 1122222 122333455543
Q ss_pred -CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee-CC-CeEEEEECCCCce
Q 021399 104 -GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-ED-AIVRIWDTETGKL 180 (313)
Q Consensus 104 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~-~d-~~i~lwd~~~~~~ 180 (313)
++.+.+..... . .+..+. .+ +......+.........+++.|...+|..+. .. +.|...++....
T Consensus 481 ~~~~LY~tD~~~-----~--~I~v~~---ld-G~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~- 548 (791)
T 3m0c_C 481 IHSNIYWTDSVL-----G--TVSVAD---TK-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD- 548 (791)
T ss_dssp TTTEEEEEETTT-----T--EEEEEE---TT-SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-
T ss_pred cCCcEEEEecCC-----C--eEEEEe---CC-CCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-
Confidence 33444432211 0 111110 00 1111122222334567888888755444433 33 788888886432
Q ss_pred eeecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCcE
Q 021399 181 LKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLEL 225 (313)
Q Consensus 181 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~ 225 (313)
...+.. ..-.....|++++.+..|+.+. ..+.|...+++....
T Consensus 549 ~~~lv~--~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 549 IYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 592 (791)
T ss_dssp EEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred eEEEEe--CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce
Confidence 222211 1224678899997766666554 456788888865433
No 309
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=91.78 E-value=5.6 Score=33.98 Aligned_cols=186 Identities=9% Similarity=-0.043 Sum_probs=97.7
Q ss_pred CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCC----eEEEEec-CCCCe
Q 021399 23 DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETG----AQLFTFN-FDSPA 96 (313)
Q Consensus 23 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~----~~~~~~~-~~~~~ 96 (313)
.+|+.+. ...|+..+++.......+. .-..+.+++|++.++ ++++-...+.|+.+++... ....... .....
T Consensus 84 ~~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 84 AYLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp CEEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred ceeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 3444443 4677888877665433333 345678999998655 4455456788988988652 1222222 22234
Q ss_pred eEEEeec-CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee-C-CCeEEEE
Q 021399 97 RSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-E-DAIVRIW 173 (313)
Q Consensus 97 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~-~-d~~i~lw 173 (313)
..+.+.. ++.+.+..... . .+... + . .+......+.........+++.|.+..|.... . .+.|...
T Consensus 162 ~glavD~~~~~lY~~d~~~-----~--~I~~~--~-~-~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~ 230 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVL-----G--TVSVA--D-T-KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKG 230 (400)
T ss_dssp EEEEEETTTTEEEEEETTT-----T--EEEEE--C-T-TTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEE
T ss_pred ccEEEEecCCceEEEECCC-----C--eEEEE--e-C-CCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEE
Confidence 4555554 44444443211 0 01000 0 0 01111222222333457788888655554443 2 4788888
Q ss_pred ECCCCceeeecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCc
Q 021399 174 DTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLE 224 (313)
Q Consensus 174 d~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~ 224 (313)
++..... ..+.. ..-.....+++++++..|..+. ..+.|..+|++...
T Consensus 231 ~~dG~~~-~~~~~--~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~ 279 (400)
T 3p5b_L 231 GLNGVDI-YSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN 279 (400)
T ss_dssp ETTSCSC-EEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCC
T ss_pred eCCCCcc-EEEEE--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCc
Confidence 8764322 22211 1224678899998777766654 46778899987543
No 310
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.60 E-value=6.5 Score=34.32 Aligned_cols=105 Identities=10% Similarity=0.208 Sum_probs=57.7
Q ss_pred CceEEEEEccCCCEEEEeeCCCeEEEEECCCCce--eeeccccc---CceeceEEEEECCC----CCEEEEeeC------
Q 021399 147 GRINRAVWGPLNRTIISAGEDAIVRIWDTETGKL--LKESDKET---GHKKTITSLAKAAD----GSHFLTGSL------ 211 (313)
Q Consensus 147 ~~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~--~~~~~~~~---~h~~~v~~~~~s~~----~~~l~s~s~------ 211 (313)
.....++|.|+++.+++--..+.|++++..+++. +..+.... ........++++|+ +...++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 3456889999998666544445799888654432 22221110 12456789999994 444444432
Q ss_pred ------CCcEEEEECCCC-------cEEE-EEec--CCceeEEEeccCCCEEEEccc
Q 021399 212 ------DKSAKLWDARTL-------ELIK-TYVT--ERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 212 ------dg~i~iwd~~~~-------~~~~-~~~~--~~~~~~~~~~p~~~~~~~~~~ 252 (313)
...|.-|+.... +.+. .+.. .+....++|.|++. ++++.|
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence 124444544321 1111 1211 23478899999986 444433
No 311
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.27 E-value=7.3 Score=39.26 Aligned_cols=202 Identities=10% Similarity=0.052 Sum_probs=102.3
Q ss_pred EEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEEC-CCCCeEEEeeCCCcEEEEECCCC-eEEEEecC-
Q 021399 16 LKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVS-RDSMTLITGSADQTAKLWNVETG-AQLFTFNF- 92 (313)
Q Consensus 16 ~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~-~~~~~l~s~s~D~~v~vWd~~~~-~~~~~~~~- 92 (313)
.-.+|..+.|+--. ..++.|+|+++...++.+.-.+ .|.-=.|- ++.--++|. ..|.-|++.+. .++..+..
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e-~VvfWkWis~~~l~lVT~---~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISLNTVALVTD---NAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC-CceEEEecCCCeeEEEcC---CeEEEeccCCCCccHHHHhcc
Confidence 45677777777654 7899999999887766665544 45444453 433234443 47999999642 23222221
Q ss_pred ----CCCeeEEEeecCCeEEEEEC--CCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEc--cC-CCEEEE
Q 021399 93 ----DSPARSVDFAVGDKLAVITT--DPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWG--PL-NRTIIS 163 (313)
Q Consensus 93 ----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~-~~~i~t 163 (313)
...+......++.+.+++.. ..-..+.+.+.+..+.+. ....++||-+........ +. ...++.
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-------~sQ~iegha~~F~~~~~~~~~~~~~l~~f 218 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-------VSQPIEGHAASFAQFKMEGNAEESTLFCF 218 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-------cchhhhHhHhhhheeccCCCCCCceEEEE
Confidence 12233333444444433321 111122333333333221 112234443322222211 11 122232
Q ss_pred eeC---CCeEEEEECCCC----ceeee-----cccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEE
Q 021399 164 AGE---DAIVRIWDTETG----KLLKE-----SDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTY 229 (313)
Q Consensus 164 ~~~---d~~i~lwd~~~~----~~~~~-----~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 229 (313)
+.. .++++|.++... ....+ +.....-.+-..++..++.-..+..-+.-|.|.++|+.|+.++..-
T Consensus 219 ~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 219 AVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 221 368999987442 11110 0111111222345566777777888889999999999999987654
No 312
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=91.21 E-value=5.2 Score=32.50 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=36.5
Q ss_pred CCCEEEEeeCC-----CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCC-----CcEEEEECCCCc
Q 021399 157 LNRTIISAGED-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLD-----KSAKLWDARTLE 224 (313)
Q Consensus 157 ~~~~i~t~~~d-----~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d-----g~i~iwd~~~~~ 224 (313)
++..++.||.+ ..+.++|+.+.+ ...+.........-.++.+ ++..++.|+.+ ..+.+||+++.+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 242 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNE-WRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETET 242 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCe-EeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCc
Confidence 45666777654 458889987653 2222111111111222233 67777888765 458899998764
No 313
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=90.96 E-value=4.7 Score=33.66 Aligned_cols=66 Identities=17% Similarity=0.095 Sum_probs=44.7
Q ss_pred CEEEEeeCCCCeEEEeCCCCcEEEEecCC-CCceEEEEEC--C-CCCeEEEe-eCCCcEEEEECCCCeEEE
Q 021399 23 DLLFSCAKDHTPTVWFADNGERLGTYRGH-NGAVWCCDVS--R-DSMTLITG-SADQTAKLWNVETGAQLF 88 (313)
Q Consensus 23 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~H-~~~V~~~~~~--~-~~~~l~s~-s~D~~v~vWd~~~~~~~~ 88 (313)
..++.++.||.|.-.|.++|+.+.+++.- ..++....-. + ++..++.. ..||.+..++..++...+
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~ 81 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL 81 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe
Confidence 47788999999999999999999988754 1223221100 1 23344343 689999999988875543
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=90.88 E-value=5.4 Score=32.14 Aligned_cols=65 Identities=9% Similarity=0.083 Sum_probs=37.2
Q ss_pred cCCCEEEEeeCC-----CCeEEEeCCCCc---EE--EEecCCCCceEEEEECCCCCeEEEeeCC-----CcEEEEECCCC
Q 021399 20 KDGDLLFSCAKD-----HTPTVWFADNGE---RL--GTYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETG 84 (313)
Q Consensus 20 ~~g~~l~s~s~d-----~~i~iw~~~~~~---~~--~~~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~v~vWd~~~~ 84 (313)
.+++.++.|+.+ ..+.+||..+.+ -. ..+......-.++.+ ++++++.||.+ ..+.++|+.+.
T Consensus 61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~ 138 (301)
T 2vpj_A 61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID 138 (301)
T ss_dssp ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence 357777777755 357888888766 22 111111111122222 56777777754 35788898776
Q ss_pred eE
Q 021399 85 AQ 86 (313)
Q Consensus 85 ~~ 86 (313)
+-
T Consensus 139 ~W 140 (301)
T 2vpj_A 139 QW 140 (301)
T ss_dssp EE
T ss_pred eE
Confidence 53
No 315
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=90.47 E-value=6.5 Score=32.36 Aligned_cols=176 Identities=8% Similarity=-0.022 Sum_probs=90.3
Q ss_pred CCCeEEEeCCCCc--EEEEecCCCCceEEEEECCC-CCeEEEeeCCCcEEEEECCCCeE---EEEecCCCCeeEEEeec-
Q 021399 31 DHTPTVWFADNGE--RLGTYRGHNGAVWCCDVSRD-SMTLITGSADQTAKLWNVETGAQ---LFTFNFDSPARSVDFAV- 103 (313)
Q Consensus 31 d~~i~iw~~~~~~--~~~~~~~H~~~V~~~~~~~~-~~~l~s~s~D~~v~vWd~~~~~~---~~~~~~~~~~~~~~~~~- 103 (313)
...|+..+++... ....+.+ -....+++|++. +.++.+-...+.|..+++..... +...... ....+.+.+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~-~p~glavd~~ 89 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLL-SPDGLACDWL 89 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCS-CCCEEEEETT
T ss_pred cCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCC-CccEEEEEcC
Confidence 4677888887653 1111221 234668899875 44555555678899999876531 1111122 233444443
Q ss_pred CCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee--CCCeEEEEECCCCcee
Q 021399 104 GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG--EDAIVRIWDTETGKLL 181 (313)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~--~d~~i~lwd~~~~~~~ 181 (313)
++.+.+..... . .+.... . + +................+++.|.+..+..+. ..+.|...++.-.. .
T Consensus 90 ~g~ly~~d~~~-----~--~I~~~~--~-d-G~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~ 157 (318)
T 3sov_A 90 GEKLYWTDSET-----N--RIEVSN--L-D-GSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-R 157 (318)
T ss_dssp TTEEEEEETTT-----T--EEEEEE--T-T-SCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-C
T ss_pred CCeEEEEECCC-----C--EEEEEE--C-C-CCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-e
Confidence 34443332211 0 000000 0 0 0111111222334457788888655554444 35788888875322 2
Q ss_pred eecccccCceeceEEEEECCCCCEEEEe-eCCCcEEEEECCC
Q 021399 182 KESDKETGHKKTITSLAKAADGSHFLTG-SLDKSAKLWDART 222 (313)
Q Consensus 182 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~-s~dg~i~iwd~~~ 222 (313)
..+.. ..-.....+++++++..|.-+ +..+.|..+|++.
T Consensus 158 ~~~~~--~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 158 FIIIN--SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp EEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEE--CCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 22111 112356889999866665554 4567889999874
No 316
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=90.41 E-value=6.9 Score=32.59 Aligned_cols=124 Identities=14% Similarity=0.040 Sum_probs=78.0
Q ss_pred CCCeEEEEECCCCcee-eecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCC
Q 021399 166 EDAIVRIWDTETGKLL-KESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL 244 (313)
Q Consensus 166 ~d~~i~lwd~~~~~~~-~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~ 244 (313)
++..|-|.|+.++... ++... -. +.-.+|..+.||.-. ..++.++|+++.+.+.......++..-.|-...
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~---Ad----sAIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis~~ 118 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPIS---AD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN 118 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECC---CS----EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECSSS
T ss_pred CCCEEEEEECCCCCCccccccc---cc----eeeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecCCC
Confidence 3447889999875543 22111 11 222467777766655 678999999999999998877777766664333
Q ss_pred CEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
..-+++ ...++-|+........+.||... .+. +..|....-++|.|+++.+-.
T Consensus 119 ~L~lVT----~taVyHWs~~~~s~P~kvFdR~~-----~L~--~~QIInY~~d~~~kW~~l~GI 171 (365)
T 2xzh_A 119 TVALVT----DNAVYHWSMEGESQPVKMFDRHS-----SLA--GCQIINYRTDAKQKWLLLTGI 171 (365)
T ss_dssp EEEEEE----SSEEEEEESSTTCCCEEEEECCG-----GGT--TCEEEEEEECTTSCEEEEEEE
T ss_pred eEEEEc----CCcEEEEcccCCCCCceeeecch-----hcc--cceEEEEEECCCCCEEEEEeE
Confidence 322333 23466665444444556666421 122 468888888999999887654
No 317
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=90.20 E-value=2.4 Score=39.38 Aligned_cols=161 Identities=9% Similarity=-0.065 Sum_probs=76.2
Q ss_pred ceeEEEEccCC-CEEEEeeCCCCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCC-CcEEEEECCCCeEEE
Q 021399 12 PLTYLKYNKDG-DLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSAD-QTAKLWNVETGAQLF 88 (313)
Q Consensus 12 ~v~~~~fs~~g-~~l~s~s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D-~~v~vWd~~~~~~~~ 88 (313)
.+..+++++.+ .++++-...+.|.+.+.+.......+...-.....++++|.+. ++++-... +.|.+.++.......
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~ 533 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 533 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE
Confidence 34578888554 4444445668888888765543333332223456788988654 44443222 677777765432222
Q ss_pred EecC-CCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEec--CCCCceEEEEEccCCCEEEEe
Q 021399 89 TFNF-DSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILK--GPQGRINRAVWGPLNRTIISA 164 (313)
Q Consensus 89 ~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~i~t~ 164 (313)
.... -.....+.+.+. ..+.++-... ..+..+.. +..... ..+. ........+++.. +..+++.
T Consensus 534 l~~~~l~~PnGlavd~~~~~LY~aD~~~-------~~I~~~d~---dG~~~~-~~~~~~~~~~~P~glavd~-~~lywtd 601 (699)
T 1n7d_A 534 LVTENIQWPNGITLDLLSGRLYWVDSKL-------HSISSIDV---NGGNRK-TILEDEKRLAHPFSLAVFE-DKVFWTD 601 (699)
T ss_dssp ESCSSCSSCCCEEECTTTCCEEEEETTT-------TEEEEECS---SSSCCE-EECCCSSSCSSCCCCEEET-TEEEEEC
T ss_pred EEeCCCCCccEEEEeccCCEEEEEecCC-------CeEEEEcc---CCCceE-EEEecCCcCCCceEeEEEC-CEEEEEe
Confidence 2111 122345666654 3343332211 00111100 000111 1111 0111112233333 3456666
Q ss_pred eCCCeEEEEECCCCceeeec
Q 021399 165 GEDAIVRIWDTETGKLLKES 184 (313)
Q Consensus 165 ~~d~~i~lwd~~~~~~~~~~ 184 (313)
...+.|..+|..+++.+..+
T Consensus 602 ~~~~~V~~~d~~~G~~~~~i 621 (699)
T 1n7d_A 602 IINEAIFSANRLTGSDVNLL 621 (699)
T ss_dssp STTTCEEEEETTTEEEEECC
T ss_pred CCCCeEEEEEccCCCceEEe
Confidence 67788988888777665544
No 318
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=89.74 E-value=7.4 Score=31.88 Aligned_cols=202 Identities=8% Similarity=-0.052 Sum_probs=104.0
Q ss_pred CCeEEEeCCCCcEEEEecCCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCC----CeEEEEecC-CCCeeEEEeec-C
Q 021399 32 HTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVET----GAQLFTFNF-DSPARSVDFAV-G 104 (313)
Q Consensus 32 ~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~----~~~~~~~~~-~~~~~~~~~~~-~ 104 (313)
..|+..|++..+....+.. -....+++|++.++ ++++-...+.|..+++.+ ......... -.....+.+.+ +
T Consensus 10 ~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp SSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTT
T ss_pred CeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecC
Confidence 5678888887665444443 34567899998654 555555678999999875 221222221 12334555553 4
Q ss_pred CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee-CC-CeEEEEECCCCceee
Q 021399 105 DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG-ED-AIVRIWDTETGKLLK 182 (313)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~-~d-~~i~lwd~~~~~~~~ 182 (313)
+.+.+..... ..+.. +. . + +................+++.|.+..+..+. .. +.|...++.- ....
T Consensus 89 ~~ly~~d~~~-----~~I~~--~~--~-~-g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~ 156 (316)
T 1ijq_A 89 SNIYWTDSVL-----GTVSV--AD--T-K-GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIY 156 (316)
T ss_dssp TEEEEEETTT-----TEEEE--EE--T-T-SSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEE
T ss_pred CeEEEEECCC-----CEEEE--Ee--C-C-CCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeE
Confidence 4444432211 00110 00 0 0 1111112222234557888888665554443 33 6888888753 3222
Q ss_pred ecccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCcEEEEEec----CCceeEEEeccCCCEEEEcc
Q 021399 183 ESDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYVT----ERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 183 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~~p~~~~~~~~~ 251 (313)
.+.. ..-.....+++++++..|..+. ..+.|..+|++.... +.+.. ......+++. .+.++.+.
T Consensus 157 ~~~~--~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~--~~~ly~~d 225 (316)
T 1ijq_A 157 SLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTD 225 (316)
T ss_dssp EEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEE
T ss_pred EEEE--CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE--CCEEEEEE
Confidence 2211 1224578899998777665554 567899999874322 22221 1224556653 35565553
No 319
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=88.68 E-value=10 Score=33.04 Aligned_cols=104 Identities=10% Similarity=0.091 Sum_probs=61.5
Q ss_pred ccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE--EEEecC------CCCceEEEEECCC----CCeEEEeeC-----
Q 021399 10 ERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTYRG------HNGAVWCCDVSRD----SMTLITGSA----- 72 (313)
Q Consensus 10 ~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~--~~~~~~------H~~~V~~~~~~~~----~~~l~s~s~----- 72 (313)
-...+.++|.|+|.++++-...+.|++++..+++. +..+.. ..+....++|+|+ +.+.++-+.
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 45668999999999888655445688877555543 223321 2456789999995 444444432
Q ss_pred -------CCcEEEEECCCC--e-----EEEE-ec--CCCCeeEEEeecCCeEEEEECC
Q 021399 73 -------DQTAKLWNVETG--A-----QLFT-FN--FDSPARSVDFAVGDKLAVITTD 113 (313)
Q Consensus 73 -------D~~v~vWd~~~~--~-----~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~ 113 (313)
...|.-+++... . .+.. +. ..+....+.|.+++.+.+...+
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 124555554321 1 1111 11 1245678888888877776554
No 320
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=87.37 E-value=14 Score=32.16 Aligned_cols=124 Identities=14% Similarity=0.030 Sum_probs=76.7
Q ss_pred CCCeEEEEECCCCceee-ecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCC
Q 021399 166 EDAIVRIWDTETGKLLK-ESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL 244 (313)
Q Consensus 166 ~d~~i~lwd~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~ 244 (313)
++..|-|.|+.++.... +.. .--+.-.+|..+.||.-. ..++.++|+++.+.+.......++..-.|-...
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi-------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~ 117 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPI-------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN 117 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEEC-------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT
T ss_pred CCCeEEEEECCCCCcceeccc-------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC
Confidence 44478889988755432 211 111233456666666554 678999999999999998876666655553322
Q ss_pred CEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEEE
Q 021399 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLLL 308 (313)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~~ 308 (313)
..-+++ ...++-|+........+.||... .+. +..|....-++|.|+++.+-.
T Consensus 118 ~l~lVT----~taVyHWsi~~~s~P~kvFdR~~-----~L~--~~QIInY~~d~~~kW~~l~GI 170 (494)
T 1bpo_A 118 TVALVT----DNAVYHWSMEGESQPVKMFDRHS-----SLA--GCQIINYRTDAKQKWLLLTGI 170 (494)
T ss_dssp EEEEEC----SSEEEEEESSSSCCCEEEEECCG-----GGT--TCEEEEEEECTTSSEEEEEEE
T ss_pred eEEEEc----CCeeEEecccCCCCchhheecch-----hcc--cceEEEEEECCCCCeEEEEee
Confidence 222333 23466666544445566776422 122 468888888999999887654
No 321
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=86.79 E-value=4.7 Score=33.67 Aligned_cols=118 Identities=13% Similarity=0.146 Sum_probs=67.7
Q ss_pred CeEEEeeCCCcEEEEECCCCeEEEEecCC--CCeeEEEeecCCeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEe
Q 021399 65 MTLITGSADQTAKLWNVETGAQLFTFNFD--SPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLIL 142 (313)
Q Consensus 65 ~~l~s~s~D~~v~vWd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (313)
.+++.++.||.|.-.|..+|+..+.+... .+... .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~-------------------------------------------~ 47 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIE-------------------------------------------I 47 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEE-------------------------------------------C
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEE-------------------------------------------e
Confidence 36788899999999999999988876532 11100 0
Q ss_pred cCCCCceEEEEEccCCCEEEEe-eCCCeEEEEECCCCceeeeccccc-CceeceEE----EE----ECCCCCEEEEeeCC
Q 021399 143 KGPQGRINRAVWGPLNRTIISA-GEDAIVRIWDTETGKLLKESDKET-GHKKTITS----LA----KAADGSHFLTGSLD 212 (313)
Q Consensus 143 ~~~~~~i~~~~~~~~~~~i~t~-~~d~~i~lwd~~~~~~~~~~~~~~-~h~~~v~~----~~----~s~~~~~l~s~s~d 212 (313)
.++... .++..++.. ..||.|..++..++...-.+.... -....+.. +. -...+..+++|+.+
T Consensus 48 ~~~~~~-------~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~ 120 (339)
T 2be1_A 48 QEPSRL-------ETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMR 120 (339)
T ss_dssp CCSCTT-------TSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEE
T ss_pred cCCccc-------cCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecC
Confidence 000000 011223333 578888888887764322111000 00011111 00 00145678999999
Q ss_pred CcEEEEECCCCcEEEEEecC
Q 021399 213 KSAKLWDARTLELIKTYVTE 232 (313)
Q Consensus 213 g~i~iwd~~~~~~~~~~~~~ 232 (313)
|++.-.|+++|+.+.++...
T Consensus 121 g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 121 TIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp EEEEEEETTTCCEEEEESTT
T ss_pred CEEEEEECCCCcEEEEEecC
Confidence 99999999999999888643
No 322
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.38 E-value=16 Score=31.90 Aligned_cols=104 Identities=12% Similarity=0.106 Sum_probs=57.1
Q ss_pred eEEEEEccCCC-EEEEeeCCCeEEEEECCCC---ceeeecccc--c----CceeceEEEEECCC----CCEEEEeeCCC-
Q 021399 149 INRAVWGPLNR-TIISAGEDAIVRIWDTETG---KLLKESDKE--T----GHKKTITSLAKAAD----GSHFLTGSLDK- 213 (313)
Q Consensus 149 i~~~~~~~~~~-~i~t~~~d~~i~lwd~~~~---~~~~~~~~~--~----~h~~~v~~~~~s~~----~~~l~s~s~dg- 213 (313)
-..++|.|++. +++++...|.|++++.... ..+..+... . ........++++|+ +...++-+.+.
T Consensus 16 P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~ 95 (463)
T 2wg3_C 16 PVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQE 95 (463)
T ss_dssp EEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCC
T ss_pred ceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCC
Confidence 34677888885 5666778899999975422 112211111 1 12456789999996 55555443211
Q ss_pred -----------cEEEEECCC----------CcEEEEEec---CCceeEEEeccCCCEEEEcccc
Q 021399 214 -----------SAKLWDART----------LELIKTYVT---ERPVNAVTMSPLLDHVVLGGGQ 253 (313)
Q Consensus 214 -----------~i~iwd~~~----------~~~~~~~~~---~~~~~~~~~~p~~~~~~~~~~~ 253 (313)
.|.-|.+.. .+.+.++.. .+....++|.|++. ++++.|+
T Consensus 96 ~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~-LYv~~Gd 158 (463)
T 2wg3_C 96 RWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGF-LYIILGD 158 (463)
T ss_dssp SSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSC-EEEEECC
T ss_pred CcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCc-EEEEeCC
Confidence 233344431 223333321 23467899999884 5555443
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=86.23 E-value=12 Score=30.19 Aligned_cols=62 Identities=10% Similarity=0.055 Sum_probs=34.1
Q ss_pred EEEEeeC--CCCeEEEeCCCCcEEE--EecCCCCceEEEEECCCCCeEEEeeCC----CcEEEEECCCCeEE
Q 021399 24 LLFSCAK--DHTPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSAD----QTAKLWNVETGAQL 87 (313)
Q Consensus 24 ~l~s~s~--d~~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D----~~v~vWd~~~~~~~ 87 (313)
.++.|+. ...+.+||..+.+-.. .+......-.++. .++.+++.||.+ ..+.++|+.+.+-.
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~ 83 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWY 83 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEE
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEE
Confidence 4444543 3567788887765321 1111111112222 256777888765 66888898877543
No 324
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=84.99 E-value=16 Score=30.56 Aligned_cols=108 Identities=19% Similarity=0.132 Sum_probs=65.4
Q ss_pred ccccccceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcE--EEEe----cCCCCceEEEEECCC----CCeEEEe--eCC
Q 021399 6 MKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGER--LGTY----RGHNGAVWCCDVSRD----SMTLITG--SAD 73 (313)
Q Consensus 6 l~~h~~~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~--~~~~----~~H~~~V~~~~~~~~----~~~l~s~--s~D 73 (313)
+...-...+.++|.|||.++++--..|.|++++.++++. +..+ ....+....++++|+ +.+.++- ..+
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 344455678999999999888766589999887655543 2222 223566889999995 4444432 244
Q ss_pred CcEEEEECCCC----------eEEEE-ec--CCCCeeEEEeecCCeEEEEECC
Q 021399 74 QTAKLWNVETG----------AQLFT-FN--FDSPARSVDFAVGDKLAVITTD 113 (313)
Q Consensus 74 ~~v~vWd~~~~----------~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~ 113 (313)
+.|.-|.+..+ +.+.. +. ..+....+.|.+++.+.+...+
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd 159 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGE 159 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBC
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECC
Confidence 55666665541 22221 11 1234456778887776665443
No 325
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=84.98 E-value=16 Score=30.63 Aligned_cols=120 Identities=9% Similarity=0.112 Sum_probs=64.7
Q ss_pred CCeEEEEECCCC--c--eeeecccccCceeceEEEEECCCCCEEEEeeC-----------------CCcEEEEECCCCcE
Q 021399 167 DAIVRIWDTETG--K--LLKESDKETGHKKTITSLAKAADGSHFLTGSL-----------------DKSAKLWDARTLEL 225 (313)
Q Consensus 167 d~~i~lwd~~~~--~--~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-----------------dg~i~iwd~~~~~~ 225 (313)
+..|.+|++... . .+.++.. ..-...++++..++|.+.++... .|.|.-+|. +++
T Consensus 138 ~s~ielf~~d~~~~~~~~~~~~~g--~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~ 213 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLKTIRH--KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV 213 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECC--TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC
T ss_pred CCeEEEEEEECCCCEEEEEecccc--CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE
Confidence 456777765432 1 1222221 11235788889999988777641 234444454 333
Q ss_pred EEEEecCCceeEEEeccCCCEEEEcccccCceeEeeccCC-Ccee-eeeeehhhhhhhccccccccceeEEEECC-CCCe
Q 021399 226 IKTYVTERPVNAVTMSPLLDHVVLGGGQDASAVTTTDHRA-GKFE-AKFFDKILQEEIGGVKGHFGPINALAFNP-DGKR 302 (313)
Q Consensus 226 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~h~~~V~~~~fsp-dgk~ 302 (313)
......-...|.++|+|+++.++++-... ..++.++... +... .+.|+ ..+..-.+++.+ +|+.
T Consensus 214 ~~~~~~l~~pNGia~spDg~~lYvadt~~-~~I~~~~~~~~g~l~~~~~~~------------~~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 214 RVVAEGFDFANGINISPDGKYVYIAELLA-HKIHVYEKHANWTLTPLRVLS------------FDTLVDNISVDPVTGDL 280 (355)
T ss_dssp EEEEEEESSEEEEEECTTSSEEEEEEGGG-TEEEEEEECTTSCEEEEEEEE------------CSSEEEEEEECTTTCCE
T ss_pred EEeecCCcccCcceECCCCCEEEEEeCCC-CeEEEEEECCCCcEecCEEEe------------CCCCCceEEEeCCCCcE
Confidence 22222234579999999999988875432 3344444321 2221 12221 134556778888 4876
Q ss_pred e
Q 021399 303 Y 303 (313)
Q Consensus 303 ~ 303 (313)
.
T Consensus 281 w 281 (355)
T 3sre_A 281 W 281 (355)
T ss_dssp E
T ss_pred E
Confidence 4
No 326
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=84.67 E-value=16 Score=30.23 Aligned_cols=57 Identities=16% Similarity=0.104 Sum_probs=26.6
Q ss_pred eEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC------cEEEEECCCCcEEEE
Q 021399 169 IVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK------SAKLWDARTLELIKT 228 (313)
Q Consensus 169 ~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg------~i~iwd~~~~~~~~~ 228 (313)
.+.+||+.+.+ ...+.........-.++. .++..++.|+.++ .+.++++++++.+..
T Consensus 286 ~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 286 STDIHLWHNGK-WDKSGELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp CCEEEECC----CEEEEECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eEEEEecCCCc-eeeCCCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 57789987643 121111111111112222 3677888888653 244457777666544
No 327
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=84.03 E-value=11 Score=36.32 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=31.7
Q ss_pred ceEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399 54 AVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (313)
Q Consensus 54 ~V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~ 91 (313)
.+.+++..++..+++|-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 45667777777899999999999999999999887654
No 328
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=83.90 E-value=15 Score=29.45 Aligned_cols=65 Identities=9% Similarity=0.141 Sum_probs=36.4
Q ss_pred CCCEEEEeeCCC-----CeEEEeCCCCcEEE--EecCCCCceEEEEECCCCCeEEEeeCCC-----cEEEEECCCCeEE
Q 021399 21 DGDLLFSCAKDH-----TPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSADQ-----TAKLWNVETGAQL 87 (313)
Q Consensus 21 ~g~~l~s~s~d~-----~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D~-----~v~vWd~~~~~~~ 87 (313)
+++.++.|+.++ .+.+||..+.+-.. .+......-.++.+ ++++++.||.++ .+.+||+.+.+=.
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~ 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence 667777777543 46778877765321 11111111122222 567778787653 4778888776533
No 329
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=82.95 E-value=19 Score=29.96 Aligned_cols=102 Identities=11% Similarity=0.052 Sum_probs=58.3
Q ss_pred ccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCCcEEEE---e----cCCCCceEEEEECCC----CCeEEEeeC-----
Q 021399 10 ERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNGERLGT---Y----RGHNGAVWCCDVSRD----SMTLITGSA----- 72 (313)
Q Consensus 10 ~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~~~~~~---~----~~H~~~V~~~~~~~~----~~~l~s~s~----- 72 (313)
-.....++|.|+|+ +++ +...+.|++++. ++..... + ....+....++++|+ +.+.++-..
T Consensus 17 l~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g 94 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLI-TLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDG 94 (353)
T ss_dssp ESSEEEEEECSTTCCEEE-EETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSS
T ss_pred CCCcEEEEEcCCCCEEEE-EeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCC
Confidence 34568899999998 555 556788888874 3332111 1 122345688999995 545555332
Q ss_pred --CCcEEEEECCCC-----eEEEEec-C------CCCeeEEEeecCCeEEEEECC
Q 021399 73 --DQTAKLWNVETG-----AQLFTFN-F------DSPARSVDFAVGDKLAVITTD 113 (313)
Q Consensus 73 --D~~v~vWd~~~~-----~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~ 113 (313)
...|..|++... .....+. . .+....+.|.+++.+.+...+
T Consensus 95 ~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 95 KAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp CEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred CceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 234666666432 1111111 1 122456888888877666544
No 330
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=82.81 E-value=4.8 Score=31.39 Aligned_cols=98 Identities=6% Similarity=-0.137 Sum_probs=59.4
Q ss_pred ceEEEEEccCCCEEEEeeCCCeEEEEECCCCceeeecc-----cccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCC
Q 021399 148 RINRAVWGPLNRTIISAGEDAIVRIWDTETGKLLKESD-----KETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDART 222 (313)
Q Consensus 148 ~i~~~~~~~~~~~i~t~~~d~~i~lwd~~~~~~~~~~~-----~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~ 222 (313)
.+..++|+|++...+. .++.++-.+..+.....-+. ...+.+. -.++.|.++|.+.++ .||.|.-++..+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence 5668999999987777 67777777764422110000 0011112 478999999987777 679998887643
Q ss_pred CcEE------EEEec--CCceeEEEeccCCCEEEEc
Q 021399 223 LELI------KTYVT--ERPVNAVTMSPLLDHVVLG 250 (313)
Q Consensus 223 ~~~~------~~~~~--~~~~~~~~~~p~~~~~~~~ 250 (313)
...- ..+-. =..+..+.+.|++..-++.
T Consensus 117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred CCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 2110 11111 1356889999998766555
No 331
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=81.37 E-value=32 Score=31.38 Aligned_cols=203 Identities=8% Similarity=-0.076 Sum_probs=104.7
Q ss_pred CCCCeEEEeCCCCcEEEEec-CCCCceEEEEECCCCC-eEEEeeCCCcEEEEECCCCeEEEEecCC-CCeeEEEeec-CC
Q 021399 30 KDHTPTVWFADNGERLGTYR-GHNGAVWCCDVSRDSM-TLITGSADQTAKLWNVETGAQLFTFNFD-SPARSVDFAV-GD 105 (313)
Q Consensus 30 ~d~~i~iw~~~~~~~~~~~~-~H~~~V~~~~~~~~~~-~l~s~s~D~~v~vWd~~~~~~~~~~~~~-~~~~~~~~~~-~~ 105 (313)
....|+.-++++......+. ..-....+++|++.+. ++++-..++.|..+++............ ..+..+++.. ++
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~ 92 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGK 92 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTT
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCC
Confidence 45678888887654332222 1234577899998655 4555556789999998765433333322 2334455543 34
Q ss_pred eEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEee--CCCeEEEEECCCCceeee
Q 021399 106 KLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAG--EDAIVRIWDTETGKLLKE 183 (313)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~~--~d~~i~lwd~~~~~~~~~ 183 (313)
.+.+..... ..+.... .+.....+. ..........+++.|....|.... ..+.|...++.-.. ...
T Consensus 93 ~LY~tD~~~-------~~I~v~~---~dG~~~~~l-~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~ 160 (628)
T 4a0p_A 93 NLYWADTGT-------NRIEVSK---LDGQHRQVL-VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTT 160 (628)
T ss_dssp EEEEEETTT-------TEEEEEE---TTSTTCEEE-ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEE
T ss_pred EEEEEECCC-------CEEEEEe---cCCCcEEEE-EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEE
Confidence 444432211 0000000 000111111 112233457888888544444433 35788888875432 222
Q ss_pred cccccCceeceEEEEECCCCCEEEEee-CCCcEEEEECCCCcEEEEEe-cCCceeEEEeccCCCEEEEc
Q 021399 184 SDKETGHKKTITSLAKAADGSHFLTGS-LDKSAKLWDARTLELIKTYV-TERPVNAVTMSPLLDHVVLG 250 (313)
Q Consensus 184 ~~~~~~h~~~v~~~~~s~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~ 250 (313)
+. ..-.....+++++++..|..+. ..+.|...|++.... ..+. .-.....+++.. +.++.+
T Consensus 161 l~---~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~--~~ly~t 223 (628)
T 4a0p_A 161 LV---PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ--DYIYWT 223 (628)
T ss_dssp EE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET--TEEEEE
T ss_pred EE---CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC--CEEEEe
Confidence 21 1234678899999777666554 467788889875433 2222 112234555432 455554
No 332
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.13 E-value=2.4 Score=40.89 Aligned_cols=38 Identities=26% Similarity=0.174 Sum_probs=32.9
Q ss_pred ceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 193 ~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
.+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 45667777888899999999999999999999988753
No 333
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=80.24 E-value=49 Score=32.78 Aligned_cols=79 Identities=15% Similarity=-0.015 Sum_probs=47.1
Q ss_pred CceEEEEEccC------CCEEEEeeC-CCeEEEEECCCCceeeeccccc-CceeceEEEEECCCCCEEEEeeCCCcEEEE
Q 021399 147 GRINRAVWGPL------NRTIISAGE-DAIVRIWDTETGKLLKESDKET-GHKKTITSLAKAADGSHFLTGSLDKSAKLW 218 (313)
Q Consensus 147 ~~i~~~~~~~~------~~~i~t~~~-d~~i~lwd~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~dg~i~iw 218 (313)
..|.++.+.|. +++++.|.. |++++|+++..-+.+....... .-...+.-+.+ ....+|..|-.||.+.-+
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l~~~ 632 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGALFYF 632 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEEEEE
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeEEEE
Confidence 35666666543 368888886 9999999998755554322111 01112222333 234678899999987544
Q ss_pred --ECCCCcEE
Q 021399 219 --DARTLELI 226 (313)
Q Consensus 219 --d~~~~~~~ 226 (313)
|..++++.
T Consensus 633 ~~d~~tg~l~ 642 (1158)
T 3ei3_A 633 GLNIETGLLS 642 (1158)
T ss_dssp EECTTTCCEE
T ss_pred EEcCCCCccc
Confidence 44556554
No 334
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=79.48 E-value=23 Score=28.55 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=35.7
Q ss_pred CCCEEEEeeC----C-----CCeEEEeCCCCcEEE--EecCCCCceEEEEECCCCCeEEEeeCC-----CcEEEEECCCC
Q 021399 21 DGDLLFSCAK----D-----HTPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSAD-----QTAKLWNVETG 84 (313)
Q Consensus 21 ~g~~l~s~s~----d-----~~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D-----~~v~vWd~~~~ 84 (313)
+++.++.|+. + ..+.++|..+.+-.. .+..-...-.++.+ ++++++.||.+ ..+.++|+.+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 5667776665 2 457788887765321 11111111122222 56777777754 46888898876
Q ss_pred eE
Q 021399 85 AQ 86 (313)
Q Consensus 85 ~~ 86 (313)
+-
T Consensus 148 ~W 149 (308)
T 1zgk_A 148 EW 149 (308)
T ss_dssp EE
T ss_pred eE
Confidence 53
No 335
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=79.15 E-value=27 Score=29.13 Aligned_cols=63 Identities=11% Similarity=0.036 Sum_probs=36.7
Q ss_pred ceEEEEEc-------cCCCEEEEeeCCCeEEEEECCCC-ceeeecccccCceeceEEEEECCCCCEEEEee
Q 021399 148 RINRAVWG-------PLNRTIISAGEDAIVRIWDTETG-KLLKESDKETGHKKTITSLAKAADGSHFLTGS 210 (313)
Q Consensus 148 ~i~~~~~~-------~~~~~i~t~~~d~~i~lwd~~~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s 210 (313)
....+.+. ..+.++++.-..+.|...++... +.........+....+..+++.|||...++..
T Consensus 260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 34556662 45666666566678888887643 22111111112235688999999998666654
No 336
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=77.72 E-value=26 Score=28.27 Aligned_cols=65 Identities=12% Similarity=0.230 Sum_probs=36.1
Q ss_pred CCCEEEEeeC-C-----CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC-----cEEEEECCCCc
Q 021399 157 LNRTIISAGE-D-----AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-----SAKLWDARTLE 224 (313)
Q Consensus 157 ~~~~i~t~~~-d-----~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg-----~i~iwd~~~~~ 224 (313)
.++.++.||. + ..+.++|+.+.+ ...+.........-.++.. ++..++.|+.++ .+..||+++.+
T Consensus 148 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 223 (315)
T 4asc_A 148 MDLVYVIGGKGSDRKCLNKMCVYDPKKFE-WKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK 223 (315)
T ss_dssp TTEEEEECCBCTTSCBCCCEEEEETTTTE-EEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred CCEEEEEeCCCCCCcccceEEEEeCCCCe-EEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence 4556677765 2 468899987653 2222211111111122222 667788887654 47788988764
No 337
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=77.56 E-value=59 Score=32.21 Aligned_cols=65 Identities=14% Similarity=0.036 Sum_probs=41.9
Q ss_pred CEEEEeeCCCCeEEEeCCCCcEEEEe-cCCCCceEEEEECCC------CCeEEEeeC-CCcEEEEECCCCeEEE
Q 021399 23 DLLFSCAKDHTPTVWFADNGERLGTY-RGHNGAVWCCDVSRD------SMTLITGSA-DQTAKLWNVETGAQLF 88 (313)
Q Consensus 23 ~~l~s~s~d~~i~iw~~~~~~~~~~~-~~H~~~V~~~~~~~~------~~~l~s~s~-D~~v~vWd~~~~~~~~ 88 (313)
.+++.++ ++.+.++..+++...... ..-.+.|.|+++.|. ++.++.|.+ |++++|+++.+.+.+.
T Consensus 524 ~~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~ 596 (1158)
T 3ei3_A 524 SQVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH 596 (1158)
T ss_dssp SEEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CEEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE
Confidence 4555554 566666666655322111 123568999998753 357888886 9999999998755543
No 338
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=75.62 E-value=31 Score=28.04 Aligned_cols=89 Identities=7% Similarity=-0.054 Sum_probs=47.4
Q ss_pred EEccCCCEEEEee----CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeC-CCcEEEEECCCCcEEE
Q 021399 153 VWGPLNRTIISAG----EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSL-DKSAKLWDARTLELIK 227 (313)
Q Consensus 153 ~~~~~~~~i~t~~----~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-dg~i~iwd~~~~~~~~ 227 (313)
.+++.++.|+-.. ....|+..++.... ..++.. +. + .+++++++.|+=.+. ..+|..-++..+...
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~~lt~---~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~- 180 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KKKIKN---HY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA- 180 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSCC-CEEEES---SC--C--CCSEEETTEEEEECTTTCCEEEEETTTTEEE-
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCCC-eEEEeC---CC--c--eEeeEECCEEEEEeCCCceEEEEECCCCCEE-
Confidence 3555666666554 34556666665322 222221 11 1 345677777775544 567888887765543
Q ss_pred EEecCCceeEEEeccCCCEEEEccc
Q 021399 228 TYVTERPVNAVTMSPLLDHVVLGGG 252 (313)
Q Consensus 228 ~~~~~~~~~~~~~~p~~~~~~~~~~ 252 (313)
.+.. .... ..++|.++.++.+..
T Consensus 181 ~l~~-~~~~-~~~~P~g~~iy~t~~ 203 (302)
T 3s25_A 181 LFYD-CNCY-KPVVLDDTNVYYMDV 203 (302)
T ss_dssp EEEC-SCEE-EEEEEETTEEEEEEG
T ss_pred EEeC-CCcc-ceeeecCCEEEEEEc
Confidence 2222 2222 235588887776543
No 339
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=75.62 E-value=50 Score=30.47 Aligned_cols=66 Identities=9% Similarity=0.069 Sum_probs=37.4
Q ss_pred cCCCEEEEeeCC----CCeEEEeCCCCcEEEEe-c-------CCCCceEEEEECCCCCeEEEeeCCC------cEEEEEC
Q 021399 20 KDGDLLFSCAKD----HTPTVWFADNGERLGTY-R-------GHNGAVWCCDVSRDSMTLITGSADQ------TAKLWNV 81 (313)
Q Consensus 20 ~~g~~l~s~s~d----~~i~iw~~~~~~~~~~~-~-------~H~~~V~~~~~~~~~~~l~s~s~D~------~v~vWd~ 81 (313)
.++..++.|+.+ ..+.+||..+.+-...- . .-...-.++.+..++++++.||.++ .+.+||+
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 467777777754 35677888777533221 1 1111112233322677888887543 5778888
Q ss_pred CCCe
Q 021399 82 ETGA 85 (313)
Q Consensus 82 ~~~~ 85 (313)
.+.+
T Consensus 476 ~t~~ 479 (695)
T 2zwa_A 476 KTRE 479 (695)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 7754
No 340
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=74.08 E-value=11 Score=37.29 Aligned_cols=37 Identities=16% Similarity=0.061 Sum_probs=29.8
Q ss_pred eEEEEECCCCCeEEEeeCCCcEEEEECCCCeEEEEec
Q 021399 55 VWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFN 91 (313)
Q Consensus 55 V~~~~~~~~~~~l~s~s~D~~v~vWd~~~~~~~~~~~ 91 (313)
+.+++..++..++++-+.|+++|+||+.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3444555677788999999999999999999887654
No 341
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=72.64 E-value=6.6 Score=36.32 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=29.9
Q ss_pred ceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEec
Q 021399 193 TITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVT 231 (313)
Q Consensus 193 ~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 231 (313)
.|.++.+ +..++++-+.|.++|+||+++++++.+...
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3554444 467999999999999999999999888753
No 342
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=72.51 E-value=3.2 Score=41.00 Aligned_cols=37 Identities=24% Similarity=0.156 Sum_probs=30.9
Q ss_pred eEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEe
Q 021399 194 ITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYV 230 (313)
Q Consensus 194 v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 230 (313)
+.+++..++..++++-+.|+++|+||+++++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3344556788899999999999999999999988864
No 343
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=72.48 E-value=36 Score=27.40 Aligned_cols=65 Identities=8% Similarity=0.042 Sum_probs=34.8
Q ss_pred ccCCCEEEEeeC-----C--C----CeEEEeCCCCcEEE--EecCCCCceEEEEECCCCCeEEEeeCC--------CcEE
Q 021399 19 NKDGDLLFSCAK-----D--H----TPTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSAD--------QTAK 77 (313)
Q Consensus 19 s~~g~~l~s~s~-----d--~----~i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D--------~~v~ 77 (313)
..+++.++.|+. . . .+.+||..+.+-.. .+......-.++.+ ++++++.||.+ ..+.
T Consensus 43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~ 120 (315)
T 4asc_A 43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVM 120 (315)
T ss_dssp CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEE
T ss_pred EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEE
Confidence 457788887773 1 1 15667877765321 11110001111222 56677777743 4588
Q ss_pred EEECCCCe
Q 021399 78 LWNVETGA 85 (313)
Q Consensus 78 vWd~~~~~ 85 (313)
++|+.+.+
T Consensus 121 ~~d~~~~~ 128 (315)
T 4asc_A 121 CYDRLSFK 128 (315)
T ss_dssp EEETTTTE
T ss_pred EECCCCCc
Confidence 89988765
No 344
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=68.84 E-value=21 Score=32.24 Aligned_cols=57 Identities=23% Similarity=0.099 Sum_probs=39.5
Q ss_pred eeEEEEccCCCEEEEeeCC----------CC--eEEEeCCCCcEEEEecCCC-CceEEEEECCCCCeEEE
Q 021399 13 LTYLKYNKDGDLLFSCAKD----------HT--PTVWFADNGERLGTYRGHN-GAVWCCDVSRDSMTLIT 69 (313)
Q Consensus 13 v~~~~fs~~g~~l~s~s~d----------~~--i~iw~~~~~~~~~~~~~H~-~~V~~~~~~~~~~~l~s 69 (313)
.-.|+|+|.|.+++.-..+ +. +.+.+..+++...-+.++. .+++.++|+||++.|+.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfv 547 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEE
Confidence 4569999999977764332 12 3344556677776677754 57899999999886654
No 345
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=67.98 E-value=36 Score=30.69 Aligned_cols=69 Identities=12% Similarity=0.090 Sum_probs=48.1
Q ss_pred EEEEEccCCCEEEEe-eCCCeEEEEECCCCc------e-------eeecccccCceeceEEEEECCCCCEEEEeeCCCcE
Q 021399 150 NRAVWGPLNRTIISA-GEDAIVRIWDTETGK------L-------LKESDKETGHKKTITSLAKAADGSHFLTGSLDKSA 215 (313)
Q Consensus 150 ~~~~~~~~~~~i~t~-~~d~~i~lwd~~~~~------~-------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i 215 (313)
+.+..+|+|++++.+ ..+.++.++|...-. . ..++. -.-.....+|.++|+-..|-..|.+|
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e----~GlGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE----LGLGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB----CCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc----CCCcccEEEECCCCceEeeeeecceE
Confidence 457788999987665 467899999986421 1 11111 23346778899999655666689999
Q ss_pred EEEECCC
Q 021399 216 KLWDART 222 (313)
Q Consensus 216 ~iwd~~~ 222 (313)
-.|+++.
T Consensus 402 vkWni~~ 408 (638)
T 3sbq_A 402 VKWNMEE 408 (638)
T ss_dssp EEEEHHH
T ss_pred EEEeccH
Confidence 9999875
No 346
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=65.63 E-value=10 Score=35.07 Aligned_cols=36 Identities=8% Similarity=0.182 Sum_probs=29.5
Q ss_pred ceeEEEEccCCCEEEEeeCCCCeEEEeCCCCcEEEEec
Q 021399 12 PLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYR 49 (313)
Q Consensus 12 ~v~~~~fs~~g~~l~s~s~d~~i~iw~~~~~~~~~~~~ 49 (313)
.|.|+.+ +..+|++-+.|+++|+|+++++.++.+..
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 4666655 47799999999999999999998876654
No 347
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=63.53 E-value=44 Score=30.10 Aligned_cols=60 Identities=23% Similarity=0.164 Sum_probs=41.0
Q ss_pred cceeEEEEccCCCEEEEeeCC------------CCeEEEeCCCCcEEEEecCC-CCceEEEEECCCCCeEEEe
Q 021399 11 RPLTYLKYNKDGDLLFSCAKD------------HTPTVWFADNGERLGTYRGH-NGAVWCCDVSRDSMTLITG 70 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s~d------------~~i~iw~~~~~~~~~~~~~H-~~~V~~~~~~~~~~~l~s~ 70 (313)
.....|.|+++|.+.++.... ..+..++..++++...+.+. ..+++.++|+||++.|+.+
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~ 548 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence 456689999999988843221 13444465667766666554 3578999999999877654
No 348
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=62.13 E-value=64 Score=26.40 Aligned_cols=63 Identities=10% Similarity=0.114 Sum_probs=34.1
Q ss_pred CCCEEEEeeCC-CCeEEEeCCC--CcE--EEEec-CCCCceEEEEECCCCCeEEEeeC-C---------CcEEEEECCCC
Q 021399 21 DGDLLFSCAKD-HTPTVWFADN--GER--LGTYR-GHNGAVWCCDVSRDSMTLITGSA-D---------QTAKLWNVETG 84 (313)
Q Consensus 21 ~g~~l~s~s~d-~~i~iw~~~~--~~~--~~~~~-~H~~~V~~~~~~~~~~~l~s~s~-D---------~~v~vWd~~~~ 84 (313)
+++.++.|+.+ ..+.++|..+ .+- +..+. .-+..-.++.+ ++++++.||. + ..+.++|+.+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 66666766643 4677778764 221 11111 11111112222 5677777776 2 46888898876
Q ss_pred e
Q 021399 85 A 85 (313)
Q Consensus 85 ~ 85 (313)
+
T Consensus 97 ~ 97 (357)
T 2uvk_A 97 S 97 (357)
T ss_dssp E
T ss_pred c
Confidence 5
No 349
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=59.89 E-value=18 Score=32.61 Aligned_cols=73 Identities=14% Similarity=0.065 Sum_probs=49.8
Q ss_pred cceeEEEEccCCCEEEEee-CCCCeEEEeCCCC------c-------EEEEecCCCCceEEEEECCCCCeEEEeeCCCcE
Q 021399 11 RPLTYLKYNKDGDLLFSCA-KDHTPTVWFADNG------E-------RLGTYRGHNGAVWCCDVSRDSMTLITGSADQTA 76 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~s-~d~~i~iw~~~~~------~-------~~~~~~~H~~~V~~~~~~~~~~~l~s~s~D~~v 76 (313)
++...+.++|||++++.++ .+.++.|+|++.- + ...+.+-- -.-.-.+|.++|+...|---|..|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-lGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-LGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-SCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-CcccEEEECCCCceEeeeeecceE
Confidence 4456789999999888766 4788999998731 1 12222221 223457899999655555589999
Q ss_pred EEEECCCC
Q 021399 77 KLWNVETG 84 (313)
Q Consensus 77 ~vWd~~~~ 84 (313)
-.|++...
T Consensus 402 vkWni~~a 409 (638)
T 3sbq_A 402 VKWNMEEA 409 (638)
T ss_dssp EEEEHHHH
T ss_pred EEEeccHH
Confidence 99998653
No 350
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=58.30 E-value=1.1e+02 Score=27.79 Aligned_cols=200 Identities=10% Similarity=0.017 Sum_probs=103.2
Q ss_pred cceeEEEEccCCCEEEEe-eCCCCeEEEeCCCCcEEEEecCCCCceEEEEECC-CCCeEEEeeCCCcEEEEECCCCeEEE
Q 021399 11 RPLTYLKYNKDGDLLFSC-AKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSR-DSMTLITGSADQTAKLWNVETGAQLF 88 (313)
Q Consensus 11 ~~v~~~~fs~~g~~l~s~-s~d~~i~iw~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~s~D~~v~vWd~~~~~~~~ 88 (313)
..+..+.|++.+..|+-+ ...+.|+.++.+.......+...-.....+++.. .++++++-+..+.|.+-++.......
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~ 428 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI 428 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE
Confidence 346789999865555544 4567788888765433333333334566788876 45566665667889999887654322
Q ss_pred Eec-CCCCeeEEEeecC-CeEEEEECCCceeccccceeeeeeeCCCCCCCceEEEecCCCCceEEEEEccCCCEEEEe-e
Q 021399 89 TFN-FDSPARSVDFAVG-DKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISA-G 165 (313)
Q Consensus 89 ~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~t~-~ 165 (313)
... .-..+..+.+.|. +.+.+..... ...+.... .+.+... ......-...+.+++.+.+..|..+ .
T Consensus 429 l~~~~l~~P~~iavdp~~G~ly~tD~g~------~~~I~r~~---~dG~~~~-~l~~~~l~~P~GlalD~~~~~LY~aD~ 498 (619)
T 3s94_A 429 LISEDLEEPRAIVLDPMVGYMYWTDWGE------IPKIERAA---LDGSDRV-VLVNTSLGWPNGLALDYDEGKIYWGDA 498 (619)
T ss_dssp EECTTCCSEEEEEEETTTTEEEEEECSS------SCEEEEEE---TTSCSCE-EEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred EEECCCCCeeeEEEEcCCCcEEEecCCC------CCEEEEEc---cCCCccE-EEEeCCCCCCeeeEEcccCCEEEEEEC
Confidence 222 2234566777764 4444433211 01111111 1111111 1222233456778888765555544 4
Q ss_pred CCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCc
Q 021399 166 EDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLE 224 (313)
Q Consensus 166 ~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~ 224 (313)
..+.|...++.... .+.+.. ..-.....++...+ ....+-...+.|...|..++.
T Consensus 499 ~~~~I~~~~~dG~~-~~~~~~--~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 499 KTDKIEVMNTDGTG-RRVLVE--DKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp TTTEEEEEESSSCC-CEEEEE--CCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred CCCEEEEEecCCCc-eEEEec--cCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 55788888875322 222211 01112234444333 344444445667777777663
No 351
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=53.32 E-value=68 Score=32.69 Aligned_cols=125 Identities=14% Similarity=0.047 Sum_probs=70.4
Q ss_pred eCCCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCCcEEEEECCCCcEEEEEecCCceeEEEeccCC
Q 021399 165 GEDAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDKSAKLWDARTLELIKTYVTERPVNAVTMSPLL 244 (313)
Q Consensus 165 ~~d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~p~~ 244 (313)
++...|-|.|+.++..+.+. .-.--+.-.+|..+.||.-. ..++.|+|+++.+.+.......++..-.|-...
T Consensus 45 ~~~~~vvIidl~~~~~~~rr------pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~ 117 (1630)
T 1xi4_A 45 GEQAQVVIIDMNDPSNPIRR------PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN 117 (1630)
T ss_pred CCCceEEEEECCCCCCcccc------cccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCC
Confidence 33447888898775533211 01111223456666555543 678999999999888888776666665663322
Q ss_pred CEEEEcccccCceeEeeccCCCceeeeeeehhhhhhhccccccccceeEEEECCCCCeeEEEE
Q 021399 245 DHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKRYGFLL 307 (313)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~fspdgk~~~~~~ 307 (313)
..-+++ ...|+-|+........++||.. ..+. +..|..-.-++|.|+++.+-
T Consensus 118 ~l~lVT----~~aVyHW~~~~~s~P~k~fdR~-----~~L~--~~QIinY~~d~~~kW~~l~g 169 (1630)
T 1xi4_A 118 TVALVT----DNAVYHWSMEGESQPVKMFDRH-----SSLA--GCQIINYRTDAKQKWLLLTG 169 (1630)
T ss_pred eeEEEc----CCeEEEeccCCCCccHHHHhcc-----hhcc--cCeeEEeeeCCCCCeEEEEe
Confidence 222332 2335555543323333444421 1121 46788888889999877654
No 352
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=52.67 E-value=88 Score=25.06 Aligned_cols=66 Identities=15% Similarity=0.223 Sum_probs=34.9
Q ss_pred cCCCEEEEeeC------CCeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEeeCCC-----cEEEEECCCCc
Q 021399 156 PLNRTIISAGE------DAIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGSLDK-----SAKLWDARTLE 224 (313)
Q Consensus 156 ~~~~~i~t~~~------d~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg-----~i~iwd~~~~~ 224 (313)
.++..++.||. -..+.++|+.+.+ ...+.........-.++.. ++..++.|+.++ .+.+||+++.+
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 233 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD-WKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK 233 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTE-EEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCE-EEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence 34566677764 2358899987754 2222111111111122222 567777777543 46688988764
No 353
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=52.31 E-value=1.2e+02 Score=26.41 Aligned_cols=105 Identities=12% Similarity=0.102 Sum_probs=62.1
Q ss_pred ccceeEEEEccCCC-EEEEeeCCCCeEEEeCCCC---cEEEEec---------CCCCceEEEEECCC----CCeEEEeeC
Q 021399 10 ERPLTYLKYNKDGD-LLFSCAKDHTPTVWFADNG---ERLGTYR---------GHNGAVWCCDVSRD----SMTLITGSA 72 (313)
Q Consensus 10 ~~~v~~~~fs~~g~-~l~s~s~d~~i~iw~~~~~---~~~~~~~---------~H~~~V~~~~~~~~----~~~l~s~s~ 72 (313)
-...+.++|.|||. .|+.+...|.|++++.+.. +.+..+. +.++....++|+|+ +.+.++-+.
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 34567899999996 4555677899999974322 1222221 12456889999996 445554332
Q ss_pred --CC----------cEEEEECCC----------CeEEEEec---CCCCeeEEEeecCCeEEEEECCC
Q 021399 73 --DQ----------TAKLWNVET----------GAQLFTFN---FDSPARSVDFAVGDKLAVITTDP 114 (313)
Q Consensus 73 --D~----------~v~vWd~~~----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 114 (313)
++ .|.-|.+.. .+.+.... ..+....+.|.+++.+.+...+.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~ 159 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDG 159 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCT
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCC
Confidence 11 333355532 12333222 23456788899988887776654
No 354
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=38.35 E-value=1.5e+02 Score=23.62 Aligned_cols=66 Identities=8% Similarity=0.037 Sum_probs=34.5
Q ss_pred ccCCCEEEEeeC----CC---C----eEEEeCCCCcEEE--EecCCCCceEEEEECCCCCeEEEeeCC-------CcEEE
Q 021399 19 NKDGDLLFSCAK----DH---T----PTVWFADNGERLG--TYRGHNGAVWCCDVSRDSMTLITGSAD-------QTAKL 78 (313)
Q Consensus 19 s~~g~~l~s~s~----d~---~----i~iw~~~~~~~~~--~~~~H~~~V~~~~~~~~~~~l~s~s~D-------~~v~v 78 (313)
..+++.++.|+. ++ . +.++|..+.+-.. .+..-...-.++.+ ++++++.||.+ ..+.+
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 131 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLC 131 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEE
Confidence 456777777773 12 1 5567777664321 11111111112222 56777777764 34778
Q ss_pred EECCCCeE
Q 021399 79 WNVETGAQ 86 (313)
Q Consensus 79 Wd~~~~~~ 86 (313)
+|+.+.+=
T Consensus 132 yd~~~~~W 139 (318)
T 2woz_A 132 YDPVAAKW 139 (318)
T ss_dssp EETTTTEE
T ss_pred EeCCCCCE
Confidence 88877653
No 355
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=36.83 E-value=2e+02 Score=25.94 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=41.4
Q ss_pred eceEEEEECCCCCEEEEeeC------------CCcEEEEECCCCcEEEEEec--CCceeEEEeccCCCEEEEcc
Q 021399 192 KTITSLAKAADGSHFLTGSL------------DKSAKLWDARTLELIKTYVT--ERPVNAVTMSPLLDHVVLGG 251 (313)
Q Consensus 192 ~~v~~~~~s~~~~~l~s~s~------------dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~ 251 (313)
.....|.|+++|...++..- ...+..++..+++..+-+.. ....+.++|+|++..++++.
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34677899999997773221 12566667777776544432 24579999999999998874
No 356
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=33.99 E-value=1.6e+02 Score=26.64 Aligned_cols=58 Identities=16% Similarity=0.140 Sum_probs=36.7
Q ss_pred EEEEEccCCCEEEEeeCC------------CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEe
Q 021399 150 NRAVWGPLNRTIISAGED------------AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTG 209 (313)
Q Consensus 150 ~~~~~~~~~~~i~t~~~d------------~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~ 209 (313)
-.+.|+|.|++++.-..+ ..+.+.+..+++..+ +... ....+++.++|+||++.|+..
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~r-f~~~-P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRR-FMVG-PIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEE-EEEC-CTTCEEEEEEECTTSSEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEE-EEeC-CCCccCcCeeECCCCCEEEEE
Confidence 457899999866543322 235555666666433 3221 245789999999999877654
No 357
>3tvt_B PINS, partner of inscuteable; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster}
Probab=31.00 E-value=14 Score=19.74 Aligned_cols=14 Identities=36% Similarity=0.812 Sum_probs=10.3
Q ss_pred ceeEEEECCCCCee
Q 021399 290 PINALAFNPDGKRY 303 (313)
Q Consensus 290 ~V~~~~fspdgk~~ 303 (313)
...-|.+.||||++
T Consensus 29 qldlikitpdgkrl 42 (50)
T 3tvt_B 29 QLDLIKITPDGKRM 42 (50)
T ss_pred hcCeEEecCCchhh
Confidence 44557889999975
No 358
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=27.20 E-value=2.4e+02 Score=22.61 Aligned_cols=60 Identities=5% Similarity=-0.101 Sum_probs=29.0
Q ss_pred ccCCCEEEEeeCC--CeEEEEECCCCceeeecccccCceeceEEEEECCCCCEEEEee--CCCcEEEEECCC
Q 021399 155 GPLNRTIISAGED--AIVRIWDTETGKLLKESDKETGHKKTITSLAKAADGSHFLTGS--LDKSAKLWDART 222 (313)
Q Consensus 155 ~~~~~~i~t~~~d--~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~dg~i~iwd~~~ 222 (313)
.|.+..|+-.... ..|..-++..... ..+. ...+. .++|++.+|.-++ ..+.|..-+++.
T Consensus 192 ~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt-----~~~~~--~~~~~g~~Iy~~~~~~~~~i~~~~~DG 255 (302)
T 3s25_A 192 VLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLT-----EANIE--HYNVYGSLIFYQRGGDNPALCVVKNDG 255 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEECSSSCCC-EECS-----CSCEE--EEEEETTEEEEEECSSSCEEEEEETTS
T ss_pred eecCCEEEEEEcCCCcEEEEEECCCCCe-EEEe-----CCCcc--eEEECCCEEEEEECCCCcEEEEEECCC
Confidence 3666655544322 3566666554332 2221 11222 3667788777543 234555556653
No 359
>1q47_A Semaphorin 3A; beta propeller, signaling protein; HET: NAG; 2.80A {Mus musculus} SCOP: b.69.12.1
Probab=20.71 E-value=3.7e+02 Score=23.55 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=35.8
Q ss_pred CEEEEeeCCCCeEEEeCCCCc--------EEEEec--CCCCceEEEEECCCCCeEEEeeCCCcEEE
Q 021399 23 DLLFSCAKDHTPTVWFADNGE--------RLGTYR--GHNGAVWCCDVSRDSMTLITGSADQTAKL 78 (313)
Q Consensus 23 ~~l~s~s~d~~i~iw~~~~~~--------~~~~~~--~H~~~V~~~~~~~~~~~l~s~s~D~~v~v 78 (313)
..++-|..+|.|.-.-..... .+.++. ....+|..+.++++++.|+.++.++.++|
T Consensus 422 tV~flGT~~G~l~Kvv~~~~~~~~~~~~~~~eei~v~~~~~pI~~m~l~~~~~~Lyv~s~~~V~~v 487 (495)
T 1q47_A 422 DVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQQLYIGSTAGVAQL 487 (495)
T ss_dssp EEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTTEEEEEBSSCEEEE
T ss_pred EEEEEeCCCcEEEEEEEcCCCCccccceEEEEEEeecCCCCccceEEEcCCCCEEEEEECCeEEEE
Confidence 367778888887643332111 122232 23468899999998888888888876665
No 360
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=20.60 E-value=5.1e+02 Score=23.94 Aligned_cols=96 Identities=5% Similarity=-0.065 Sum_probs=51.4
Q ss_pred CCeEEEEECCCCc-------eeeecccccCceeceEEEEECCCCCEEEEeeCCCc--EEEEECCCCc-EEEE-Eec--CC
Q 021399 167 DAIVRIWDTETGK-------LLKESDKETGHKKTITSLAKAADGSHFLTGSLDKS--AKLWDARTLE-LIKT-YVT--ER 233 (313)
Q Consensus 167 d~~i~lwd~~~~~-------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~dg~--i~iwd~~~~~-~~~~-~~~--~~ 233 (313)
.+.|.+.|+.+.. ..+.+.. ......+..+.+..+ ..+++...++. +.++|+.+++ .... +.. ..
T Consensus 319 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~ 396 (711)
T 4hvt_A 319 AGSLVALHFTDLLKTESDKTSLKILFT-PTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQWTKPVVLKLPYQN 396 (711)
T ss_dssp TTCEEEEEGGGGGSCGGGCTTCEEEEC-CCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTEECCCEEECCCSTT
T ss_pred CCeEEEEECCcccccccccccceEEEC-CCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCceEEEeccCCCCCe
Confidence 5668888876531 1222111 123446778888866 56777777775 6677776654 1222 222 23
Q ss_pred ceeEEEeccCCCEEEEccccc--CceeEeeccC
Q 021399 234 PVNAVTMSPLLDHVVLGGGQD--ASAVTTTDHR 264 (313)
Q Consensus 234 ~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~ 264 (313)
.+...+..++++.+++...+. -..++..|..
T Consensus 397 ~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 397 AIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp CEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 455566667776665543322 2345555543
Done!