Query 021401
Match_columns 313
No_of_seqs 328 out of 2054
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 02:39:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05225 ketol-acid reductoiso 100.0 9E-43 1.9E-47 344.8 16.2 218 71-312 1-227 (487)
2 COG0059 IlvC Ketol-acid reduct 100.0 1.4E-40 3.1E-45 313.5 17.4 187 106-312 14-203 (338)
3 PRK13403 ketol-acid reductoiso 100.0 8.8E-39 1.9E-43 306.2 18.7 188 104-312 10-200 (335)
4 PRK05479 ketol-acid reductoiso 100.0 7.2E-36 1.6E-40 287.7 19.0 188 104-311 11-201 (330)
5 TIGR00465 ilvC ketol-acid redu 100.0 1.1E-32 2.4E-37 264.2 20.0 185 108-312 1-188 (314)
6 PF07991 IlvN: Acetohydroxy ac 100.0 4.2E-32 9.1E-37 237.3 14.9 161 108-288 2-163 (165)
7 COG0287 TyrA Prephenate dehydr 99.9 2.2E-21 4.7E-26 183.6 15.5 170 112-299 4-176 (279)
8 PRK12491 pyrroline-5-carboxyla 99.8 1.2E-19 2.6E-24 170.7 16.3 149 112-287 3-157 (272)
9 PRK07417 arogenate dehydrogena 99.8 1.3E-19 2.7E-24 170.1 15.5 171 112-298 1-171 (279)
10 PRK06545 prephenate dehydrogen 99.8 2.7E-19 5.9E-24 173.9 17.1 175 112-297 1-177 (359)
11 COG0345 ProC Pyrroline-5-carbo 99.8 4.4E-19 9.5E-24 166.8 15.8 153 111-293 1-158 (266)
12 PLN02256 arogenate dehydrogena 99.8 6.9E-19 1.5E-23 168.3 17.1 169 109-299 35-209 (304)
13 PRK08507 prephenate dehydrogen 99.8 1.6E-18 3.5E-23 162.0 16.6 164 112-298 1-172 (275)
14 PRK08818 prephenate dehydrogen 99.8 1E-18 2.2E-23 171.3 14.2 151 112-298 5-159 (370)
15 PRK07679 pyrroline-5-carboxyla 99.8 8.4E-18 1.8E-22 157.7 17.1 158 112-298 4-167 (279)
16 PRK07502 cyclohexadienyl dehyd 99.8 9.8E-18 2.1E-22 159.1 17.2 169 112-298 7-183 (307)
17 PF02153 PDH: Prephenate dehyd 99.8 2.6E-18 5.6E-23 160.1 12.8 162 126-299 1-163 (258)
18 PLN02688 pyrroline-5-carboxyla 99.8 2.1E-17 4.5E-22 153.0 17.9 153 112-293 1-158 (266)
19 PRK08655 prephenate dehydrogen 99.8 2.7E-17 5.8E-22 164.3 17.1 163 112-298 1-167 (437)
20 PRK06928 pyrroline-5-carboxyla 99.7 4.4E-17 9.5E-22 153.2 16.3 152 111-288 1-158 (277)
21 PTZ00431 pyrroline carboxylate 99.7 2.2E-16 4.8E-21 147.1 16.2 144 112-288 4-151 (260)
22 PRK11880 pyrroline-5-carboxyla 99.7 2.5E-16 5.4E-21 145.9 15.9 148 111-286 2-153 (267)
23 PLN02712 arogenate dehydrogena 99.7 3.1E-16 6.7E-21 164.0 16.4 173 105-298 364-541 (667)
24 PLN02712 arogenate dehydrogena 99.7 9.2E-16 2E-20 160.4 17.3 166 112-299 53-225 (667)
25 PRK07634 pyrroline-5-carboxyla 99.7 1.9E-15 4.2E-20 137.9 15.9 151 112-289 5-161 (245)
26 PRK11199 tyrA bifunctional cho 99.7 1.6E-15 3.5E-20 148.7 15.1 149 110-298 97-246 (374)
27 PRK14806 bifunctional cyclohex 99.6 7.1E-15 1.5E-19 154.4 18.2 164 112-297 4-180 (735)
28 COG1052 LdhA Lactate dehydroge 99.6 2.6E-15 5.6E-20 145.1 13.1 168 85-276 117-299 (324)
29 PRK07680 late competence prote 99.6 7E-15 1.5E-19 137.4 15.5 146 112-286 1-153 (273)
30 COG0111 SerA Phosphoglycerate 99.6 2.9E-15 6.2E-20 144.7 12.3 157 85-267 117-283 (324)
31 PRK06476 pyrroline-5-carboxyla 99.6 2.5E-14 5.4E-19 132.5 13.9 143 112-289 1-148 (258)
32 PRK08410 2-hydroxyacid dehydro 99.6 1E-14 2.3E-19 139.8 11.2 164 86-277 115-295 (311)
33 PRK06932 glycerate dehydrogena 99.6 1.7E-14 3.7E-19 138.6 12.4 168 85-279 116-300 (314)
34 PRK15409 bifunctional glyoxyla 99.6 2.4E-14 5.3E-19 138.1 12.8 164 85-275 117-295 (323)
35 PF02826 2-Hacid_dh_C: D-isome 99.6 5E-15 1.1E-19 130.7 7.1 156 86-267 11-177 (178)
36 PRK06436 glycerate dehydrogena 99.6 2E-14 4.2E-19 137.7 11.4 157 86-276 100-267 (303)
37 PRK05808 3-hydroxybutyryl-CoA 99.6 1E-13 2.2E-18 130.1 15.4 154 111-289 3-179 (282)
38 PRK06130 3-hydroxybutyryl-CoA 99.5 1.3E-13 2.7E-18 130.8 16.1 155 111-289 4-176 (311)
39 PRK13243 glyoxylate reductase; 99.5 5.4E-14 1.2E-18 136.0 12.5 156 85-268 118-290 (333)
40 PRK07574 formate dehydrogenase 99.5 1.5E-13 3.2E-18 135.7 15.5 167 85-276 165-344 (385)
41 PRK06487 glycerate dehydrogena 99.5 5.3E-14 1.2E-18 135.2 11.5 162 86-277 118-296 (317)
42 PLN02545 3-hydroxybutyryl-CoA 99.5 3.2E-13 6.9E-18 127.4 16.0 155 111-289 4-180 (295)
43 PF03446 NAD_binding_2: NAD bi 99.5 2E-13 4.3E-18 118.7 12.1 151 111-286 1-155 (163)
44 PLN03139 formate dehydrogenase 99.5 3.4E-13 7.5E-18 133.1 14.9 166 85-275 172-350 (386)
45 PLN02928 oxidoreductase family 99.5 1.9E-13 4.2E-18 133.0 12.8 170 87-277 138-323 (347)
46 PRK15469 ghrA bifunctional gly 99.5 4.2E-13 9.1E-18 128.9 12.5 155 86-268 114-277 (312)
47 PRK11790 D-3-phosphoglycerate 99.5 2.9E-13 6.2E-18 134.5 11.6 156 86-267 127-293 (409)
48 TIGR01327 PGDH D-3-phosphoglyc 99.5 6.1E-13 1.3E-17 135.8 13.5 156 86-268 114-279 (525)
49 PRK08293 3-hydroxybutyryl-CoA 99.4 3.2E-12 7E-17 120.4 16.9 154 111-288 3-180 (287)
50 PRK12480 D-lactate dehydrogena 99.4 1.3E-12 2.8E-17 126.4 13.7 156 86-267 121-297 (330)
51 PRK13581 D-3-phosphoglycerate 99.4 7.8E-13 1.7E-17 135.1 12.4 155 86-268 116-280 (526)
52 KOG0069 Glyoxylate/hydroxypyru 99.4 2E-12 4.2E-17 125.3 14.1 167 85-278 135-314 (336)
53 COG2084 MmsB 3-hydroxyisobutyr 99.4 2.2E-12 4.8E-17 122.8 14.2 148 112-286 1-156 (286)
54 PF03807 F420_oxidored: NADP o 99.4 6.1E-13 1.3E-17 104.9 8.4 89 113-211 1-93 (96)
55 PRK06444 prephenate dehydrogen 99.4 1.9E-12 4.2E-17 117.1 12.7 123 112-299 1-126 (197)
56 PRK07531 bifunctional 3-hydrox 99.4 3.9E-12 8.5E-17 129.0 16.4 151 111-289 4-177 (495)
57 PRK09260 3-hydroxybutyryl-CoA 99.4 6.7E-12 1.5E-16 118.2 16.7 154 111-288 1-177 (288)
58 KOG0068 D-3-phosphoglycerate d 99.4 1.6E-12 3.5E-17 125.3 11.4 175 87-286 123-313 (406)
59 PRK06035 3-hydroxyacyl-CoA deh 99.4 1.2E-11 2.6E-16 116.6 16.6 154 111-289 3-182 (291)
60 TIGR01915 npdG NADPH-dependent 99.4 1.1E-11 2.4E-16 112.6 15.1 158 112-289 1-185 (219)
61 PLN02306 hydroxypyruvate reduc 99.4 3.8E-12 8.2E-17 125.8 12.5 170 85-275 137-330 (386)
62 KOG3124 Pyrroline-5-carboxylat 99.4 4.9E-12 1.1E-16 118.0 11.7 149 112-287 1-155 (267)
63 PF10727 Rossmann-like: Rossma 99.4 1.7E-12 3.8E-17 109.9 7.5 114 112-237 11-127 (127)
64 TIGR00872 gnd_rel 6-phosphoglu 99.3 2.7E-11 5.9E-16 115.0 15.3 147 112-286 1-153 (298)
65 TIGR00112 proC pyrroline-5-car 99.3 1.7E-11 3.6E-16 113.7 13.4 133 142-297 11-144 (245)
66 PRK15059 tartronate semialdehy 99.3 3.1E-11 6.6E-16 114.7 15.1 151 112-288 1-156 (292)
67 PRK07530 3-hydroxybutyryl-CoA 99.3 5.4E-11 1.2E-15 112.2 16.4 154 111-289 4-180 (292)
68 PRK12490 6-phosphogluconate de 99.3 2.9E-11 6.2E-16 114.8 14.5 147 112-286 1-154 (299)
69 PRK06129 3-hydroxyacyl-CoA deh 99.3 9.2E-11 2E-15 111.7 17.1 153 111-287 2-177 (308)
70 PRK08605 D-lactate dehydrogena 99.3 6.4E-12 1.4E-16 121.5 9.2 135 86-237 121-267 (332)
71 COG2085 Predicted dinucleotide 99.3 6.5E-11 1.4E-15 108.0 14.3 157 111-289 1-176 (211)
72 TIGR01505 tartro_sem_red 2-hyd 99.3 3.6E-11 7.7E-16 113.2 13.0 151 113-292 1-159 (291)
73 PRK07066 3-hydroxybutyryl-CoA 99.3 1.5E-10 3.3E-15 111.9 16.4 154 111-288 7-179 (321)
74 PRK00094 gpsA NAD(P)H-dependen 99.2 1.2E-10 2.7E-15 110.0 13.3 153 111-286 1-172 (325)
75 PRK15461 NADH-dependent gamma- 99.2 2.4E-10 5.3E-15 108.4 15.2 151 111-288 1-158 (296)
76 PRK09599 6-phosphogluconate de 99.2 2.2E-10 4.8E-15 108.8 14.1 147 112-286 1-154 (301)
77 PRK11559 garR tartronate semia 99.2 3.8E-10 8.3E-15 106.2 15.2 151 112-289 3-160 (296)
78 PLN02350 phosphogluconate dehy 99.2 1.7E-10 3.8E-15 117.2 13.3 153 111-287 6-168 (493)
79 TIGR01692 HIBADH 3-hydroxyisob 99.2 3.5E-10 7.5E-15 106.7 14.0 147 116-287 1-152 (288)
80 PRK11861 bifunctional prephena 99.2 6.9E-11 1.5E-15 124.0 9.9 115 182-299 1-116 (673)
81 PRK08268 3-hydroxy-acyl-CoA de 99.2 7.8E-10 1.7E-14 112.8 16.5 155 110-289 6-183 (507)
82 PTZ00142 6-phosphogluconate de 99.2 6.1E-10 1.3E-14 112.7 15.0 151 111-287 1-162 (470)
83 PRK15438 erythronate-4-phospha 99.2 7.1E-11 1.5E-15 116.5 8.1 150 106-286 112-280 (378)
84 TIGR01724 hmd_rel H2-forming N 99.1 7.9E-10 1.7E-14 106.7 14.0 146 123-287 32-188 (341)
85 TIGR00873 gnd 6-phosphoglucona 99.1 4.2E-10 9E-15 113.8 12.4 147 113-287 1-159 (467)
86 PRK12557 H(2)-dependent methyl 99.1 1.5E-09 3.3E-14 105.7 15.9 146 123-294 32-194 (342)
87 PRK07819 3-hydroxybutyryl-CoA 99.1 2.5E-09 5.4E-14 101.4 16.3 153 111-288 5-182 (286)
88 PRK00257 erythronate-4-phospha 99.1 1.4E-10 3.1E-15 114.5 7.3 151 106-287 112-281 (381)
89 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.1 2.5E-09 5.4E-14 109.1 16.0 154 111-289 5-181 (503)
90 KOG2380 Prephenate dehydrogena 99.1 1.5E-09 3.2E-14 105.3 13.4 167 112-299 53-225 (480)
91 PF02737 3HCDH_N: 3-hydroxyacy 99.1 3.1E-09 6.7E-14 94.4 13.4 150 113-287 1-173 (180)
92 TIGR03026 NDP-sugDHase nucleot 99.0 5.6E-09 1.2E-13 103.4 14.6 161 112-295 1-202 (411)
93 PRK14618 NAD(P)H-dependent gly 99.0 2.4E-09 5.1E-14 102.6 11.1 150 112-286 5-171 (328)
94 PRK11064 wecC UDP-N-acetyl-D-m 98.9 2.1E-08 4.6E-13 99.8 15.4 163 111-295 3-206 (415)
95 PLN02858 fructose-bisphosphate 98.9 9.9E-09 2.1E-13 115.3 14.2 152 112-288 325-483 (1378)
96 PRK14619 NAD(P)H-dependent gly 98.9 5.5E-09 1.2E-13 99.5 10.2 79 109-212 3-82 (308)
97 KOG0409 Predicted dehydrogenas 98.9 1.6E-08 3.4E-13 96.8 12.1 149 112-289 36-194 (327)
98 PF01210 NAD_Gly3P_dh_N: NAD-d 98.9 7.5E-09 1.6E-13 89.6 8.8 95 113-214 1-106 (157)
99 PLN02858 fructose-bisphosphate 98.9 2.5E-08 5.5E-13 112.0 15.0 151 112-287 5-162 (1378)
100 PRK12439 NAD(P)H-dependent gly 98.9 3.1E-08 6.8E-13 96.0 13.6 119 112-241 8-145 (341)
101 PRK12921 2-dehydropantoate 2-r 98.9 8.1E-08 1.8E-12 90.2 15.3 159 112-291 1-175 (305)
102 TIGR02853 spore_dpaA dipicolin 98.8 1.3E-08 2.8E-13 96.9 9.2 115 87-214 126-242 (287)
103 COG1250 FadB 3-hydroxyacyl-CoA 98.8 1.4E-07 3.1E-12 90.8 14.9 152 111-286 3-176 (307)
104 cd01065 NAD_bind_Shikimate_DH 98.8 7.1E-09 1.5E-13 87.9 5.0 120 107-238 16-141 (155)
105 PTZ00075 Adenosylhomocysteinas 98.8 2.9E-08 6.3E-13 100.5 10.1 93 106-214 250-343 (476)
106 PF00670 AdoHcyase_NAD: S-aden 98.8 2.9E-08 6.4E-13 87.5 8.5 94 106-215 19-113 (162)
107 PRK11730 fadB multifunctional 98.8 1.7E-07 3.7E-12 99.4 15.5 156 109-289 311-489 (715)
108 PRK08229 2-dehydropantoate 2-r 98.7 1.8E-07 3.9E-12 89.5 14.2 103 111-221 2-118 (341)
109 TIGR02437 FadB fatty oxidation 98.7 1.8E-07 3.9E-12 99.2 15.0 156 109-289 311-489 (714)
110 PRK06522 2-dehydropantoate 2-r 98.7 4.8E-07 1E-11 84.7 16.2 96 112-215 1-104 (304)
111 TIGR02441 fa_ox_alpha_mit fatt 98.7 1.7E-07 3.7E-12 99.7 14.3 155 110-289 334-511 (737)
112 TIGR02440 FadJ fatty oxidation 98.7 2.6E-07 5.7E-12 97.7 15.5 155 110-289 303-481 (699)
113 PRK11154 fadJ multifunctional 98.7 4.5E-07 9.7E-12 96.1 16.1 155 110-289 308-486 (708)
114 PRK14620 NAD(P)H-dependent gly 98.6 4.7E-07 1E-11 86.6 13.4 96 112-214 1-109 (326)
115 cd00401 AdoHcyase S-adenosyl-L 98.6 8E-07 1.7E-11 88.9 14.5 92 107-214 199-291 (413)
116 COG1023 Gnd Predicted 6-phosph 98.6 6.7E-07 1.4E-11 83.6 12.7 146 112-286 1-154 (300)
117 PRK06249 2-dehydropantoate 2-r 98.6 2.8E-06 6.1E-11 81.1 16.6 157 112-291 6-184 (313)
118 TIGR00936 ahcY adenosylhomocys 98.5 6.4E-07 1.4E-11 89.4 11.0 92 107-214 192-284 (406)
119 PRK08306 dipicolinate synthase 98.5 5.6E-07 1.2E-11 86.0 10.1 95 106-213 148-242 (296)
120 PRK15182 Vi polysaccharide bio 98.5 2.9E-06 6.3E-11 85.1 15.3 94 112-214 7-122 (425)
121 PLN02494 adenosylhomocysteinas 98.5 8E-07 1.7E-11 90.1 10.6 92 107-214 251-343 (477)
122 PRK05476 S-adenosyl-L-homocyst 98.5 8.7E-07 1.9E-11 88.9 10.4 93 107-215 209-302 (425)
123 PRK09287 6-phosphogluconate de 98.4 2.3E-06 5E-11 86.7 12.0 139 122-287 1-150 (459)
124 PTZ00345 glycerol-3-phosphate 98.4 1.2E-06 2.6E-11 86.3 9.5 98 112-215 12-133 (365)
125 TIGR03376 glycerol3P_DH glycer 98.4 1.8E-06 3.9E-11 84.4 10.6 98 113-216 1-121 (342)
126 COG0240 GpsA Glycerol-3-phosph 98.4 4.7E-06 1E-10 81.0 12.6 148 112-282 2-167 (329)
127 PRK14194 bifunctional 5,10-met 98.4 1.1E-06 2.5E-11 84.5 8.3 76 106-212 155-231 (301)
128 PF03721 UDPG_MGDP_dh_N: UDP-g 98.4 1.3E-05 2.7E-10 71.8 14.1 95 112-214 1-122 (185)
129 PRK15057 UDP-glucose 6-dehydro 98.3 7.4E-06 1.6E-10 81.2 13.3 92 112-214 1-119 (388)
130 PRK13302 putative L-aspartate 98.3 3.7E-06 8E-11 79.5 10.2 92 112-213 7-100 (271)
131 PLN02353 probable UDP-glucose 98.3 8.5E-06 1.8E-10 82.9 13.4 169 111-295 1-210 (473)
132 PRK13304 L-aspartate dehydroge 98.3 4.4E-06 9.6E-11 78.5 10.6 82 111-200 1-83 (265)
133 COG0362 Gnd 6-phosphogluconate 98.2 1.1E-05 2.3E-10 80.1 11.5 148 112-287 4-163 (473)
134 cd05213 NAD_bind_Glutamyl_tRNA 98.2 6.9E-06 1.5E-10 78.8 9.0 97 107-212 175-273 (311)
135 PRK08269 3-hydroxybutyryl-CoA 98.2 6.1E-05 1.3E-09 72.7 15.4 145 122-289 1-176 (314)
136 smart00859 Semialdhyde_dh Semi 98.2 7.5E-06 1.6E-10 67.5 7.9 98 113-215 1-102 (122)
137 PRK14188 bifunctional 5,10-met 98.2 6E-06 1.3E-10 79.3 8.2 76 107-213 155-231 (296)
138 PF01408 GFO_IDH_MocA: Oxidore 98.1 2.3E-05 5E-10 63.5 9.2 82 112-201 1-85 (120)
139 PRK05708 2-dehydropantoate 2-r 98.1 4.6E-05 1E-09 72.8 12.5 97 112-215 3-108 (305)
140 COG1893 ApbA Ketopantoate redu 98.1 0.00015 3.2E-09 69.9 15.4 156 112-288 1-171 (307)
141 COG4007 Predicted dehydrogenas 98.1 4.4E-05 9.5E-10 72.3 11.3 156 112-286 2-188 (340)
142 cd01075 NAD_bind_Leu_Phe_Val_D 98.0 1.1E-05 2.4E-10 72.9 6.7 91 105-211 23-114 (200)
143 PRK14179 bifunctional 5,10-met 98.0 1.7E-05 3.6E-10 75.9 7.7 76 106-212 154-230 (284)
144 COG0677 WecC UDP-N-acetyl-D-ma 98.0 0.00014 3.1E-09 72.3 14.3 88 112-210 10-126 (436)
145 PF01488 Shikimate_DH: Shikima 98.0 7.9E-06 1.7E-10 69.2 4.7 96 106-212 8-109 (135)
146 PF02558 ApbA: Ketopantoate re 97.9 3.9E-05 8.4E-10 64.9 8.2 99 114-220 1-111 (151)
147 KOG2304 3-hydroxyacyl-CoA dehy 97.9 3.8E-05 8.3E-10 71.6 8.2 155 111-289 11-193 (298)
148 PRK00045 hemA glutamyl-tRNA re 97.9 2.6E-05 5.6E-10 78.0 7.0 98 107-213 179-281 (423)
149 TIGR00518 alaDH alanine dehydr 97.8 3.4E-05 7.5E-10 76.0 7.1 98 108-212 165-267 (370)
150 COG0499 SAM1 S-adenosylhomocys 97.8 3.8E-05 8.3E-10 75.5 7.0 94 106-215 205-299 (420)
151 PRK06141 ornithine cyclodeamin 97.8 4.4E-05 9.5E-10 73.5 6.9 90 109-211 124-218 (314)
152 PRK14189 bifunctional 5,10-met 97.8 6.1E-05 1.3E-09 72.1 7.0 76 106-212 154-230 (285)
153 PRK00048 dihydrodipicolinate r 97.8 0.00017 3.7E-09 67.5 9.9 161 111-286 1-171 (257)
154 PF01118 Semialdhyde_dh: Semia 97.8 9.4E-05 2E-09 61.2 7.2 92 113-214 1-99 (121)
155 TIGR02371 ala_DH_arch alanine 97.7 8.6E-05 1.9E-09 71.9 7.8 95 111-215 128-225 (325)
156 KOG1370 S-adenosylhomocysteine 97.7 0.00014 3.1E-09 70.3 8.9 94 107-215 211-304 (434)
157 TIGR01035 hemA glutamyl-tRNA r 97.7 0.00011 2.4E-09 73.4 8.5 98 106-212 176-277 (417)
158 PRK13303 L-aspartate dehydroge 97.7 0.00032 6.9E-09 66.0 10.7 81 111-200 1-83 (265)
159 cd01080 NAD_bind_m-THF_DH_Cycl 97.7 0.00013 2.9E-09 64.5 7.5 76 106-212 40-116 (168)
160 PRK14175 bifunctional 5,10-met 97.7 0.00013 2.9E-09 69.8 7.7 77 106-213 154-231 (286)
161 cd01078 NAD_bind_H4MPT_DH NADP 97.6 0.00015 3.2E-09 64.4 6.4 99 106-213 24-130 (194)
162 PLN00203 glutamyl-tRNA reducta 97.6 0.00029 6.2E-09 72.6 9.3 99 107-212 263-369 (519)
163 PRK04207 glyceraldehyde-3-phos 97.5 0.0007 1.5E-08 66.1 11.1 96 111-214 1-111 (341)
164 COG0686 Ald Alanine dehydrogen 97.5 0.00023 4.9E-09 69.1 7.4 167 72-246 130-308 (371)
165 TIGR00036 dapB dihydrodipicoli 97.5 0.0011 2.3E-08 62.6 11.6 163 111-286 1-181 (266)
166 PRK07340 ornithine cyclodeamin 97.5 0.00021 4.6E-09 68.5 6.9 92 109-215 124-220 (304)
167 TIGR01921 DAP-DH diaminopimela 97.5 0.00033 7.2E-09 68.2 8.2 77 112-198 4-80 (324)
168 COG0373 HemA Glutamyl-tRNA red 97.5 0.00044 9.5E-09 69.4 8.6 97 106-212 174-274 (414)
169 PF01113 DapB_N: Dihydrodipico 97.5 0.00043 9.3E-09 57.9 7.2 93 112-216 1-103 (124)
170 PRK06223 malate dehydrogenase; 97.5 0.0012 2.6E-08 62.8 11.1 69 111-186 2-78 (307)
171 TIGR03215 ac_ald_DH_ac acetald 97.4 0.0019 4.2E-08 61.8 11.3 91 112-213 2-96 (285)
172 PRK08618 ornithine cyclodeamin 97.4 0.00061 1.3E-08 65.8 7.9 92 112-215 128-224 (325)
173 PRK14192 bifunctional 5,10-met 97.3 0.00061 1.3E-08 65.1 7.7 76 106-212 155-231 (283)
174 PRK08300 acetaldehyde dehydrog 97.3 0.0018 3.9E-08 62.6 10.9 92 112-214 5-103 (302)
175 PRK00436 argC N-acetyl-gamma-g 97.3 0.0013 2.9E-08 64.1 10.1 96 111-214 2-101 (343)
176 TIGR00561 pntA NAD(P) transhyd 97.3 0.00076 1.6E-08 69.4 8.5 97 108-212 162-284 (511)
177 TIGR00507 aroE shikimate 5-deh 97.3 0.00031 6.8E-09 65.8 5.1 95 108-213 115-215 (270)
178 PRK10792 bifunctional 5,10-met 97.3 0.00095 2.1E-08 64.0 8.4 76 106-212 155-231 (285)
179 KOG2653 6-phosphogluconate deh 97.3 0.0012 2.5E-08 65.2 8.8 146 112-285 7-164 (487)
180 cd05212 NAD_bind_m-THF_DH_Cycl 97.3 0.00097 2.1E-08 57.5 7.4 76 106-212 24-100 (140)
181 PF02882 THF_DHG_CYH_C: Tetrah 97.3 0.0013 2.8E-08 58.0 8.3 78 106-214 32-110 (160)
182 PRK13940 glutamyl-tRNA reducta 97.3 0.00051 1.1E-08 68.9 6.4 75 106-189 177-253 (414)
183 COG1712 Predicted dinucleotide 97.3 0.0017 3.6E-08 60.6 9.2 82 112-201 1-83 (255)
184 PRK00258 aroE shikimate 5-dehy 97.3 0.00039 8.4E-09 65.7 5.3 99 106-212 119-221 (278)
185 TIGR02992 ectoine_eutC ectoine 97.3 0.00069 1.5E-08 65.5 7.2 91 112-214 130-226 (326)
186 PRK00961 H(2)-dependent methyl 97.3 0.0014 3.1E-08 62.7 9.0 107 159-287 126-237 (342)
187 cd05311 NAD_bind_2_malic_enz N 97.3 0.0017 3.7E-08 59.9 9.3 94 106-212 21-128 (226)
188 PRK06046 alanine dehydrogenase 97.2 0.00087 1.9E-08 64.8 7.7 92 112-215 130-226 (326)
189 PRK07589 ornithine cyclodeamin 97.2 0.00071 1.5E-08 66.4 7.0 97 110-215 128-228 (346)
190 cd05191 NAD_bind_amino_acid_DH 97.2 0.0018 3.9E-08 50.5 7.7 66 106-211 19-85 (86)
191 TIGR01763 MalateDH_bact malate 97.2 0.0028 6.1E-08 60.9 10.6 66 112-187 2-78 (305)
192 KOG2711 Glycerol-3-phosphate d 97.2 0.0057 1.2E-07 60.0 12.5 182 112-303 22-251 (372)
193 TIGR01723 hmd_TIGR 5,10-methen 97.2 0.0025 5.4E-08 61.1 9.8 107 159-287 124-235 (340)
194 COG5495 Uncharacterized conser 97.2 0.0038 8.3E-08 58.5 10.7 157 112-291 11-168 (289)
195 KOG2305 3-hydroxyacyl-CoA dehy 97.2 0.0021 4.5E-08 60.3 8.8 153 112-287 4-179 (313)
196 COG2423 Predicted ornithine cy 97.2 0.0014 3.1E-08 64.0 8.1 95 110-214 129-227 (330)
197 TIGR01850 argC N-acetyl-gamma- 97.2 0.0025 5.4E-08 62.4 9.8 95 112-214 1-101 (346)
198 COG0673 MviM Predicted dehydro 97.1 0.0026 5.7E-08 60.3 9.0 78 112-198 4-87 (342)
199 PRK06718 precorrin-2 dehydroge 97.1 0.0033 7.1E-08 57.1 9.0 85 106-199 6-91 (202)
200 PRK06407 ornithine cyclodeamin 97.1 0.0014 3E-08 63.0 6.9 94 111-215 117-215 (301)
201 PRK13301 putative L-aspartate 97.0 0.0042 9.2E-08 59.1 9.8 81 112-200 3-84 (267)
202 PRK09310 aroDE bifunctional 3- 97.0 0.0016 3.4E-08 66.4 7.3 75 106-190 328-402 (477)
203 COG1748 LYS9 Saccharopine dehy 97.0 0.0027 5.8E-08 63.4 8.7 79 111-196 1-86 (389)
204 PRK14191 bifunctional 5,10-met 97.0 0.0019 4E-08 62.0 7.2 76 106-212 153-229 (285)
205 PRK14178 bifunctional 5,10-met 97.0 0.0018 3.9E-08 61.9 6.9 76 106-212 148-224 (279)
206 cd05291 HicDH_like L-2-hydroxy 97.0 0.0047 1E-07 59.1 9.8 67 112-188 1-78 (306)
207 cd01079 NAD_bind_m-THF_DH NAD 97.0 0.0022 4.8E-08 58.4 7.1 94 106-214 58-158 (197)
208 PRK06823 ornithine cyclodeamin 97.0 0.0019 4E-08 62.6 7.1 94 111-215 128-225 (315)
209 PRK08291 ectoine utilization p 97.0 0.0019 4.1E-08 62.6 7.1 91 112-213 133-228 (330)
210 PF01262 AlaDh_PNT_C: Alanine 97.0 0.00087 1.9E-08 58.6 4.1 100 105-212 15-139 (168)
211 PF00056 Ldh_1_N: lactate/mala 97.0 0.0034 7.3E-08 53.7 7.6 67 112-186 1-77 (141)
212 TIGR00745 apbA_panE 2-dehydrop 96.9 0.028 6.1E-07 52.1 14.4 145 122-290 2-164 (293)
213 PF02254 TrkA_N: TrkA-N domain 96.9 0.009 1.9E-07 48.1 9.7 93 114-213 1-98 (116)
214 cd05292 LDH_2 A subgroup of L- 96.9 0.0049 1.1E-07 59.2 9.5 70 112-188 1-77 (308)
215 PTZ00117 malate dehydrogenase; 96.9 0.0065 1.4E-07 58.7 10.3 70 109-186 4-81 (319)
216 PRK09496 trkA potassium transp 96.9 0.0067 1.4E-07 60.1 10.3 91 112-209 1-97 (453)
217 PRK11579 putative oxidoreducta 96.9 0.008 1.7E-07 58.1 10.3 79 112-200 5-86 (346)
218 PF02423 OCD_Mu_crystall: Orni 96.9 0.00083 1.8E-08 64.7 3.4 96 111-215 128-227 (313)
219 PRK09424 pntA NAD(P) transhydr 96.8 0.0042 9E-08 64.0 8.6 97 108-212 163-285 (509)
220 PRK12549 shikimate 5-dehydroge 96.8 0.0029 6.3E-08 60.2 6.9 96 106-211 123-226 (284)
221 PRK14176 bifunctional 5,10-met 96.8 0.0045 9.7E-08 59.5 8.0 77 106-213 160-237 (287)
222 cd05211 NAD_bind_Glu_Leu_Phe_V 96.8 0.0042 9.2E-08 57.1 7.2 79 106-191 19-110 (217)
223 PTZ00082 L-lactate dehydrogena 96.8 0.014 3.1E-07 56.5 11.2 66 112-186 7-82 (321)
224 PRK14982 acyl-ACP reductase; P 96.8 0.0034 7.5E-08 61.6 6.9 164 106-288 151-336 (340)
225 PRK14183 bifunctional 5,10-met 96.8 0.0045 9.8E-08 59.3 7.5 76 106-212 153-229 (281)
226 COG0569 TrkA K+ transport syst 96.7 0.0073 1.6E-07 55.6 8.6 82 112-199 1-87 (225)
227 TIGR01546 GAPDH-II_archae glyc 96.7 0.0095 2.1E-07 58.4 9.4 90 114-209 1-105 (333)
228 PRK14186 bifunctional 5,10-met 96.7 0.0058 1.3E-07 59.0 7.7 77 106-213 154-231 (297)
229 PRK14170 bifunctional 5,10-met 96.7 0.0057 1.2E-07 58.7 7.6 76 106-212 153-229 (284)
230 PRK06719 precorrin-2 dehydroge 96.7 0.0069 1.5E-07 52.9 7.5 84 105-200 8-92 (157)
231 PRK10206 putative oxidoreducta 96.7 0.0096 2.1E-07 57.9 9.2 82 112-200 2-86 (344)
232 cd01339 LDH-like_MDH L-lactate 96.7 0.0089 1.9E-07 56.9 8.9 66 114-186 1-74 (300)
233 COG0190 FolD 5,10-methylene-te 96.7 0.0056 1.2E-07 58.6 7.4 77 106-213 152-229 (283)
234 PLN02516 methylenetetrahydrofo 96.7 0.0057 1.2E-07 59.1 7.5 76 106-212 163-239 (299)
235 PRK14173 bifunctional 5,10-met 96.6 0.0061 1.3E-07 58.6 7.6 76 106-212 151-227 (287)
236 PRK04148 hypothetical protein; 96.6 0.022 4.8E-07 48.9 10.3 97 108-213 15-112 (134)
237 PRK14177 bifunctional 5,10-met 96.6 0.0066 1.4E-07 58.3 7.7 76 106-212 155-231 (284)
238 COG1004 Ugd Predicted UDP-gluc 96.6 0.0098 2.1E-07 59.5 9.0 92 112-210 1-118 (414)
239 PRK14172 bifunctional 5,10-met 96.6 0.0067 1.4E-07 58.1 7.6 76 106-212 154-230 (278)
240 PF13241 NAD_binding_7: Putati 96.6 0.0081 1.7E-07 48.5 7.1 78 106-198 3-80 (103)
241 PRK06199 ornithine cyclodeamin 96.6 0.0041 8.9E-08 61.7 6.3 97 110-213 154-260 (379)
242 PRK14169 bifunctional 5,10-met 96.6 0.0072 1.6E-07 57.9 7.6 77 106-213 152-229 (282)
243 PF13380 CoA_binding_2: CoA bi 96.6 0.018 3.9E-07 47.8 9.1 85 112-213 1-89 (116)
244 PRK14190 bifunctional 5,10-met 96.5 0.0081 1.7E-07 57.7 7.6 76 106-212 154-230 (284)
245 PRK14166 bifunctional 5,10-met 96.5 0.0085 1.8E-07 57.5 7.6 76 106-212 153-229 (282)
246 PRK00066 ldh L-lactate dehydro 96.5 0.013 2.8E-07 56.7 8.8 72 109-187 5-82 (315)
247 PRK14180 bifunctional 5,10-met 96.5 0.0098 2.1E-07 57.0 7.7 76 106-212 154-230 (282)
248 PRK14171 bifunctional 5,10-met 96.5 0.0095 2.1E-07 57.3 7.6 76 106-212 155-231 (288)
249 PRK14187 bifunctional 5,10-met 96.5 0.0094 2E-07 57.5 7.6 76 106-212 156-232 (294)
250 PLN02616 tetrahydrofolate dehy 96.4 0.0082 1.8E-07 59.4 7.3 76 106-212 227-303 (364)
251 PRK05472 redox-sensing transcr 96.4 0.0049 1.1E-07 56.0 5.3 81 112-199 85-167 (213)
252 PRK03659 glutathione-regulated 96.4 0.015 3.3E-07 60.9 9.6 91 112-209 401-496 (601)
253 PRK14182 bifunctional 5,10-met 96.4 0.011 2.3E-07 56.8 7.7 76 106-212 153-229 (282)
254 TIGR01809 Shik-DH-AROM shikima 96.4 0.0071 1.5E-07 57.4 6.5 77 107-190 122-202 (282)
255 PRK14193 bifunctional 5,10-met 96.4 0.01 2.2E-07 57.0 7.5 76 106-212 154-232 (284)
256 PLN02897 tetrahydrofolate dehy 96.4 0.01 2.2E-07 58.4 7.4 76 106-212 210-286 (345)
257 PRK00683 murD UDP-N-acetylmura 96.4 0.012 2.6E-07 58.4 8.1 68 112-190 4-71 (418)
258 PRK10669 putative cation:proto 96.3 0.02 4.4E-07 59.1 9.6 79 106-193 414-496 (558)
259 PRK14184 bifunctional 5,10-met 96.3 0.0081 1.8E-07 57.7 6.2 76 106-212 153-233 (286)
260 cd00650 LDH_MDH_like NAD-depen 96.3 0.021 4.7E-07 53.2 8.8 65 114-186 1-78 (263)
261 TIGR01470 cysG_Nterm siroheme 96.3 0.04 8.6E-07 50.2 10.1 79 106-193 5-84 (205)
262 COG0169 AroE Shikimate 5-dehyd 96.2 0.011 2.4E-07 56.7 6.3 95 106-211 122-225 (283)
263 PF02629 CoA_binding: CoA bind 96.2 0.0082 1.8E-07 47.9 4.6 79 112-200 4-84 (96)
264 COG4074 Mth H2-forming N5,N10- 96.2 0.023 4.9E-07 53.3 8.1 107 159-284 124-232 (343)
265 PRK14185 bifunctional 5,10-met 96.2 0.017 3.7E-07 55.7 7.5 76 106-212 153-233 (293)
266 PRK09496 trkA potassium transp 96.1 0.052 1.1E-06 53.8 11.1 96 108-211 229-330 (453)
267 PRK14174 bifunctional 5,10-met 96.1 0.018 3.8E-07 55.6 7.4 80 106-212 155-235 (295)
268 PRK03562 glutathione-regulated 96.1 0.03 6.5E-07 59.0 9.6 87 112-205 401-491 (621)
269 cd01076 NAD_bind_1_Glu_DH NAD( 96.1 0.014 3E-07 54.0 6.2 86 106-198 27-127 (227)
270 PRK05678 succinyl-CoA syntheta 96.0 0.048 1.1E-06 52.5 10.0 89 112-216 9-102 (291)
271 PF13460 NAD_binding_10: NADH( 96.0 0.07 1.5E-06 45.8 10.0 66 114-188 1-70 (183)
272 TIGR02354 thiF_fam2 thiamine b 96.0 0.032 7E-07 50.6 8.2 102 105-214 16-146 (200)
273 TIGR02356 adenyl_thiF thiazole 95.9 0.05 1.1E-06 49.1 9.1 88 105-199 16-132 (202)
274 cd01338 MDH_choloroplast_like 95.9 0.028 6.1E-07 54.6 7.9 69 112-186 3-86 (322)
275 PLN02819 lysine-ketoglutarate 95.9 0.018 3.8E-07 64.0 7.2 86 109-197 567-667 (1042)
276 TIGR02717 AcCoA-syn-alpha acet 95.9 0.053 1.1E-06 54.9 9.9 87 112-215 8-100 (447)
277 PF05368 NmrA: NmrA-like famil 95.9 0.057 1.2E-06 48.6 9.2 69 114-188 1-74 (233)
278 PF03435 Saccharop_dh: Sacchar 95.9 0.04 8.6E-07 53.9 8.8 91 114-213 1-99 (386)
279 cd05297 GH4_alpha_glucosidase_ 95.7 0.018 4E-07 57.7 5.9 74 112-188 1-84 (423)
280 TIGR01759 MalateDH-SF1 malate 95.7 0.055 1.2E-06 52.7 9.0 69 112-186 4-87 (323)
281 PRK14181 bifunctional 5,10-met 95.7 0.038 8.2E-07 53.2 7.6 80 106-212 149-229 (287)
282 PRK00421 murC UDP-N-acetylmura 95.7 0.048 1.1E-06 54.8 8.8 71 105-185 2-73 (461)
283 TIGR01851 argC_other N-acetyl- 95.7 0.07 1.5E-06 51.9 9.4 80 112-214 2-82 (310)
284 PF03720 UDPG_MGDP_dh_C: UDP-g 95.6 0.049 1.1E-06 44.2 7.1 82 121-214 17-103 (106)
285 PRK12749 quinate/shikimate deh 95.6 0.029 6.3E-07 53.7 6.5 99 106-212 120-233 (288)
286 cd05290 LDH_3 A subgroup of L- 95.6 0.053 1.2E-06 52.4 8.4 69 113-187 1-77 (307)
287 COG1064 AdhP Zn-dependent alco 95.6 0.054 1.2E-06 53.3 8.4 92 108-211 165-258 (339)
288 cd05293 LDH_1 A subgroup of L- 95.5 0.029 6.3E-07 54.3 6.4 68 112-186 4-79 (312)
289 PRK00676 hemA glutamyl-tRNA re 95.5 0.037 7.9E-07 54.4 7.1 64 106-186 170-234 (338)
290 PRK11863 N-acetyl-gamma-glutam 95.5 0.073 1.6E-06 51.8 9.1 80 112-214 3-83 (313)
291 PRK05442 malate dehydrogenase; 95.5 0.053 1.2E-06 52.8 8.0 23 111-133 4-27 (326)
292 PLN02968 Probable N-acetyl-gam 95.4 0.047 1E-06 54.3 7.6 94 112-214 39-136 (381)
293 PRK14168 bifunctional 5,10-met 95.4 0.047 1E-06 52.8 7.2 80 106-212 157-237 (297)
294 PF00185 OTCace: Aspartate/orn 95.4 0.17 3.6E-06 44.2 10.0 71 109-188 1-83 (158)
295 TIGR00670 asp_carb_tr aspartat 95.3 0.17 3.6E-06 48.9 10.7 71 106-185 146-223 (301)
296 PRK01710 murD UDP-N-acetylmura 95.3 0.048 1E-06 54.9 7.2 71 106-185 10-84 (458)
297 cd00300 LDH_like L-lactate deh 95.3 0.09 2E-06 50.3 8.7 68 114-187 1-75 (300)
298 COG0002 ArgC Acetylglutamate s 95.3 0.12 2.7E-06 50.9 9.7 96 111-214 2-103 (349)
299 KOG0067 Transcription factor C 95.2 0.012 2.6E-07 58.5 2.6 99 105-216 173-274 (435)
300 PRK12475 thiamine/molybdopteri 95.2 0.1 2.2E-06 51.1 9.1 90 105-201 19-139 (338)
301 PRK12548 shikimate 5-dehydroge 95.2 0.047 1E-06 52.0 6.6 98 106-211 122-235 (289)
302 cd01336 MDH_cytoplasmic_cytoso 95.2 0.078 1.7E-06 51.5 8.2 75 112-186 3-86 (325)
303 TIGR01758 MDH_euk_cyt malate d 95.2 0.061 1.3E-06 52.3 7.4 68 113-186 1-83 (324)
304 KOG0022 Alcohol dehydrogenase, 95.2 0.034 7.5E-07 54.4 5.5 52 106-164 189-240 (375)
305 PTZ00325 malate dehydrogenase; 95.1 0.046 9.9E-07 53.2 6.3 74 105-187 3-85 (321)
306 PRK00141 murD UDP-N-acetylmura 95.1 0.062 1.3E-06 54.5 7.5 75 106-189 11-87 (473)
307 PRK14874 aspartate-semialdehyd 95.1 0.083 1.8E-06 51.4 8.0 90 112-214 2-96 (334)
308 PRK03369 murD UDP-N-acetylmura 95.0 0.12 2.5E-06 52.8 9.2 71 106-186 8-78 (488)
309 COG0136 Asd Aspartate-semialde 95.0 0.41 8.9E-06 47.1 12.4 94 112-214 2-99 (334)
310 PRK14106 murD UDP-N-acetylmura 95.0 0.12 2.5E-06 51.5 8.9 72 107-187 2-77 (450)
311 PLN02383 aspartate semialdehyd 95.0 0.093 2E-06 51.6 8.0 87 112-214 8-102 (344)
312 PRK01438 murD UDP-N-acetylmura 95.0 0.096 2.1E-06 52.7 8.3 71 106-186 12-86 (480)
313 cd08230 glucose_DH Glucose deh 94.9 0.29 6.3E-06 46.9 11.2 95 108-212 171-269 (355)
314 cd00704 MDH Malate dehydrogena 94.9 0.096 2.1E-06 50.9 7.9 68 113-186 2-84 (323)
315 COG2344 AT-rich DNA-binding pr 94.9 0.049 1.1E-06 49.7 5.4 79 112-199 85-167 (211)
316 PRK05671 aspartate-semialdehyd 94.9 0.098 2.1E-06 51.3 7.9 88 112-214 5-99 (336)
317 PRK14167 bifunctional 5,10-met 94.9 0.084 1.8E-06 51.1 7.3 79 106-212 153-233 (297)
318 PRK05086 malate dehydrogenase; 94.9 0.14 3.1E-06 49.4 9.0 72 112-187 1-78 (312)
319 cd05294 LDH-like_MDH_nadp A la 94.9 0.14 3.1E-06 49.3 8.8 69 112-187 1-81 (309)
320 PRK01390 murD UDP-N-acetylmura 94.8 0.08 1.7E-06 53.1 7.2 67 106-184 5-71 (460)
321 PRK08306 dipicolinate synthase 94.8 0.13 2.7E-06 49.4 8.2 85 110-209 2-98 (296)
322 PLN02602 lactate dehydrogenase 94.8 0.1 2.2E-06 51.5 7.6 68 112-186 38-113 (350)
323 COG1063 Tdh Threonine dehydrog 94.8 0.3 6.4E-06 47.6 10.9 94 108-211 167-268 (350)
324 KOG2741 Dimeric dihydrodiol de 94.7 0.19 4.1E-06 49.6 9.3 92 112-209 7-101 (351)
325 TIGR01202 bchC 2-desacetyl-2-h 94.7 0.18 3.9E-06 47.7 8.9 89 108-212 143-231 (308)
326 PRK06270 homoserine dehydrogen 94.7 0.11 2.4E-06 50.7 7.6 98 112-209 3-122 (341)
327 PLN02353 probable UDP-glucose 94.6 0.24 5.3E-06 50.7 10.2 102 106-215 320-450 (473)
328 COG1648 CysG Siroheme synthase 94.6 0.23 5E-06 45.6 9.1 83 105-196 7-90 (210)
329 COG2910 Putative NADH-flavin r 94.6 0.13 2.7E-06 47.1 7.1 68 112-188 1-72 (211)
330 PRK12562 ornithine carbamoyltr 94.5 0.31 6.8E-06 47.8 10.4 71 107-186 153-233 (334)
331 PRK09880 L-idonate 5-dehydroge 94.4 0.42 9.1E-06 45.6 10.9 95 108-212 168-266 (343)
332 TIGR01772 MDH_euk_gproteo mala 94.4 0.26 5.7E-06 47.8 9.5 67 113-187 1-76 (312)
333 TIGR01761 thiaz-red thiazoliny 94.4 0.21 4.5E-06 49.2 8.9 85 112-208 4-93 (343)
334 cd01492 Aos1_SUMO Ubiquitin ac 94.4 0.24 5.1E-06 44.7 8.6 28 105-133 16-43 (197)
335 TIGR00978 asd_EA aspartate-sem 94.4 0.16 3.4E-06 49.6 7.9 95 112-214 1-106 (341)
336 PLN02520 bifunctional 3-dehydr 94.4 0.096 2.1E-06 54.2 6.7 94 107-211 376-474 (529)
337 PLN00112 malate dehydrogenase 94.3 0.58 1.3E-05 47.7 12.1 75 112-186 101-184 (444)
338 TIGR03366 HpnZ_proposed putati 94.3 0.34 7.3E-06 45.0 9.6 48 109-163 120-167 (280)
339 cd01485 E1-1_like Ubiquitin ac 94.3 0.26 5.6E-06 44.5 8.6 35 105-146 14-49 (198)
340 PRK02006 murD UDP-N-acetylmura 94.2 0.17 3.7E-06 51.5 8.1 74 107-189 4-82 (498)
341 PRK08040 putative semialdehyde 94.2 0.14 3E-06 50.3 7.1 90 112-214 5-99 (336)
342 PRK06349 homoserine dehydrogen 94.0 0.16 3.4E-06 51.1 7.3 91 112-209 4-101 (426)
343 PF00899 ThiF: ThiF family; I 94.0 0.16 3.4E-06 42.5 6.1 30 112-147 3-33 (135)
344 TIGR03026 NDP-sugDHase nucleot 93.9 0.38 8.1E-06 47.9 9.7 90 106-211 309-409 (411)
345 PRK02472 murD UDP-N-acetylmura 93.9 0.22 4.9E-06 49.4 8.1 71 107-186 2-76 (447)
346 cd00757 ThiF_MoeB_HesA_family 93.9 0.24 5.2E-06 45.4 7.7 28 105-133 16-43 (228)
347 PF10100 DUF2338: Uncharacteri 93.9 2.4 5.2E-05 42.9 15.1 167 111-299 1-208 (429)
348 cd08237 ribitol-5-phosphate_DH 93.9 0.48 1E-05 45.4 10.0 89 109-211 163-255 (341)
349 cd01337 MDH_glyoxysomal_mitoch 93.9 0.17 3.7E-06 49.0 7.0 67 112-186 1-76 (310)
350 PRK12809 putative oxidoreducta 93.8 0.25 5.5E-06 52.0 8.7 72 109-187 309-404 (639)
351 PRK08644 thiamine biosynthesis 93.8 0.4 8.7E-06 43.8 9.0 28 105-133 23-50 (212)
352 PRK00779 ornithine carbamoyltr 93.8 0.57 1.2E-05 45.3 10.4 71 106-185 148-224 (304)
353 PRK05690 molybdopterin biosynt 93.8 0.3 6.6E-06 45.5 8.3 28 105-133 27-54 (245)
354 cd01483 E1_enzyme_family Super 93.8 0.53 1.2E-05 39.5 9.1 28 113-146 1-29 (143)
355 PRK07688 thiamine/molybdopteri 93.7 0.38 8.3E-06 47.1 9.2 89 105-200 19-138 (339)
356 PRK04690 murD UDP-N-acetylmura 93.7 0.21 4.6E-06 50.6 7.6 71 107-186 5-77 (468)
357 PRK06598 aspartate-semialdehyd 93.6 0.21 4.5E-06 49.7 7.2 93 111-214 1-100 (369)
358 PRK09414 glutamate dehydrogena 93.6 0.2 4.4E-06 51.0 7.3 87 106-199 228-333 (445)
359 PRK08664 aspartate-semialdehyd 93.6 0.24 5.2E-06 48.4 7.5 94 112-214 4-109 (349)
360 PLN00106 malate dehydrogenase 93.6 0.19 4.2E-06 49.0 6.8 69 112-186 19-94 (323)
361 COG0026 PurK Phosphoribosylami 93.6 0.11 2.4E-06 51.6 5.2 66 112-184 2-68 (375)
362 PRK06019 phosphoribosylaminoim 93.6 0.14 3E-06 50.3 5.9 65 111-184 2-69 (372)
363 PRK02318 mannitol-1-phosphate 93.6 0.16 3.5E-06 50.2 6.3 84 112-202 1-104 (381)
364 PF04016 DUF364: Domain of unk 93.5 0.17 3.6E-06 43.8 5.7 90 105-212 6-95 (147)
365 COG2227 UbiG 2-polyprenyl-3-me 93.5 0.55 1.2E-05 44.2 9.5 92 108-212 58-161 (243)
366 PRK06728 aspartate-semialdehyd 93.5 0.24 5.1E-06 48.9 7.4 89 112-214 6-101 (347)
367 PRK12550 shikimate 5-dehydroge 93.5 0.16 3.5E-06 48.3 6.0 85 112-211 123-215 (272)
368 PRK10537 voltage-gated potassi 93.5 0.48 1E-05 47.5 9.6 88 112-210 241-335 (393)
369 TIGR01019 sucCoAalpha succinyl 93.5 0.53 1.1E-05 45.3 9.5 91 112-216 7-100 (286)
370 PTZ00187 succinyl-CoA syntheta 93.5 0.59 1.3E-05 45.7 9.9 91 112-216 30-125 (317)
371 PLN03075 nicotianamine synthas 93.5 0.3 6.5E-06 47.3 7.8 120 85-211 98-232 (296)
372 PF03447 NAD_binding_3: Homose 93.4 0.44 9.5E-06 38.7 7.7 82 118-209 1-87 (117)
373 PRK15076 alpha-galactosidase; 93.4 0.18 3.9E-06 51.0 6.4 75 111-188 1-85 (431)
374 TIGR01771 L-LDH-NAD L-lactate 93.3 0.28 6E-06 47.2 7.4 66 116-187 1-73 (299)
375 PRK04308 murD UDP-N-acetylmura 93.3 0.33 7.1E-06 48.5 8.2 71 107-186 2-75 (445)
376 PLN02586 probable cinnamyl alc 93.3 0.7 1.5E-05 44.8 10.3 93 109-211 183-277 (360)
377 COG0771 MurD UDP-N-acetylmuram 93.3 0.22 4.9E-06 50.7 7.0 71 106-185 3-76 (448)
378 PRK05562 precorrin-2 dehydroge 93.3 0.86 1.9E-05 42.4 10.3 85 106-199 21-106 (223)
379 PRK08328 hypothetical protein; 93.3 0.56 1.2E-05 43.3 9.1 28 105-133 22-49 (231)
380 PLN02527 aspartate carbamoyltr 93.2 0.6 1.3E-05 45.2 9.5 72 106-185 147-225 (306)
381 PRK14027 quinate/shikimate deh 93.2 0.18 4E-06 48.1 5.9 76 107-190 124-206 (283)
382 PRK04284 ornithine carbamoyltr 93.2 0.33 7.2E-06 47.5 7.8 72 106-186 151-232 (332)
383 COG0031 CysK Cysteine synthase 93.2 0.68 1.5E-05 44.9 9.7 103 186-299 41-156 (300)
384 TIGR00658 orni_carb_tr ornithi 93.1 0.5 1.1E-05 45.7 8.8 72 106-186 144-224 (304)
385 PRK00856 pyrB aspartate carbam 93.1 0.3 6.6E-06 47.3 7.2 67 106-186 152-221 (305)
386 TIGR01318 gltD_gamma_fam gluta 92.9 0.51 1.1E-05 47.8 9.0 73 109-188 140-236 (467)
387 PRK14804 ornithine carbamoyltr 92.9 0.48 1E-05 46.0 8.4 70 107-186 150-226 (311)
388 TIGR02822 adh_fam_2 zinc-bindi 92.8 0.79 1.7E-05 43.8 9.7 90 109-212 165-254 (329)
389 PRK08762 molybdopterin biosynt 92.8 0.68 1.5E-05 45.7 9.4 89 105-200 130-247 (376)
390 PRK07806 short chain dehydroge 92.7 1.1 2.3E-05 40.2 9.9 37 107-150 3-40 (248)
391 cd01487 E1_ThiF_like E1_ThiF_l 92.7 1 2.2E-05 39.8 9.5 30 113-148 1-31 (174)
392 PRK02255 putrescine carbamoylt 92.6 0.98 2.1E-05 44.4 10.1 71 107-186 151-230 (338)
393 TIGR01757 Malate-DH_plant mala 92.5 1 2.2E-05 45.1 10.3 22 112-133 45-67 (387)
394 TIGR01296 asd_B aspartate-semi 92.5 0.26 5.6E-06 48.2 5.9 88 113-214 1-94 (339)
395 CHL00194 ycf39 Ycf39; Provisio 92.5 0.28 6.1E-06 46.4 6.0 69 112-187 1-73 (317)
396 PF03059 NAS: Nicotianamine sy 92.4 0.7 1.5E-05 44.3 8.7 99 112-215 122-235 (276)
397 PRK01713 ornithine carbamoyltr 92.4 0.47 1E-05 46.5 7.6 71 107-186 153-233 (334)
398 PRK03806 murD UDP-N-acetylmura 92.2 0.56 1.2E-05 46.7 8.0 70 107-185 3-72 (438)
399 PRK05597 molybdopterin biosynt 92.1 0.76 1.6E-05 45.2 8.7 88 105-199 23-139 (355)
400 PRK08374 homoserine dehydrogen 92.1 1.2 2.6E-05 43.5 10.0 88 112-199 3-112 (336)
401 PRK14573 bifunctional D-alanyl 92.1 0.46 9.9E-06 51.5 7.8 65 112-185 5-70 (809)
402 PRK02102 ornithine carbamoyltr 92.0 0.58 1.3E-05 45.9 7.8 72 106-186 151-232 (331)
403 PRK03803 murD UDP-N-acetylmura 92.0 0.51 1.1E-05 47.2 7.5 66 112-185 7-75 (448)
404 TIGR01532 E4PD_g-proteo D-eryt 91.9 0.68 1.5E-05 45.3 8.0 95 113-212 1-120 (325)
405 PRK12771 putative glutamate sy 91.9 0.4 8.7E-06 49.6 6.8 75 107-188 134-232 (564)
406 TIGR02355 moeB molybdopterin s 91.8 0.7 1.5E-05 43.0 7.7 88 105-199 19-135 (240)
407 PRK13814 pyrB aspartate carbam 91.8 0.65 1.4E-05 45.1 7.8 67 106-184 153-223 (310)
408 PRK05600 thiamine biosynthesis 91.8 0.55 1.2E-05 46.6 7.4 89 105-200 36-153 (370)
409 cd08255 2-desacetyl-2-hydroxye 91.8 1.5 3.3E-05 39.9 9.8 93 108-213 96-191 (277)
410 COG0039 Mdh Malate/lactate deh 91.7 0.31 6.7E-06 47.5 5.4 71 112-186 1-77 (313)
411 COG0078 ArgF Ornithine carbamo 91.7 0.62 1.4E-05 45.3 7.4 85 108-203 151-248 (310)
412 PRK11891 aspartate carbamoyltr 91.7 1.3 2.8E-05 45.1 10.0 71 108-186 239-316 (429)
413 cd01486 Apg7 Apg7 is an E1-lik 91.7 0.44 9.5E-06 46.4 6.4 21 113-133 1-21 (307)
414 PRK03515 ornithine carbamoyltr 91.6 0.77 1.7E-05 45.1 8.1 71 107-186 153-233 (336)
415 PRK06392 homoserine dehydrogen 91.6 0.73 1.6E-05 45.0 7.8 22 112-133 1-22 (326)
416 PLN02342 ornithine carbamoyltr 91.6 0.73 1.6E-05 45.5 7.9 71 106-186 190-267 (348)
417 PRK01581 speE spermidine synth 91.5 1 2.2E-05 45.0 8.9 133 72-213 100-269 (374)
418 PRK07200 aspartate/ornithine c 91.5 0.71 1.5E-05 46.4 7.9 71 107-186 184-270 (395)
419 TIGR02819 fdhA_non_GSH formald 91.5 1.8 3.9E-05 42.7 10.7 98 108-212 184-299 (393)
420 PLN02477 glutamate dehydrogena 91.4 0.38 8.2E-06 48.5 5.8 36 106-148 202-237 (410)
421 PRK00517 prmA ribosomal protei 91.3 0.84 1.8E-05 42.3 7.7 88 108-211 118-212 (250)
422 COG1062 AdhC Zn-dependent alco 91.3 1.3 2.8E-05 44.0 9.1 130 107-252 183-331 (366)
423 PRK10637 cysG siroheme synthas 91.3 1.2 2.6E-05 45.2 9.4 82 105-195 7-89 (457)
424 TIGR01745 asd_gamma aspartate- 91.3 0.51 1.1E-05 47.0 6.5 90 112-214 1-99 (366)
425 TIGR01087 murD UDP-N-acetylmur 91.2 0.61 1.3E-05 46.3 7.1 65 113-186 1-70 (433)
426 PRK08223 hypothetical protein; 91.2 1.3 2.9E-05 42.6 9.1 28 105-133 22-49 (287)
427 PRK14031 glutamate dehydrogena 91.1 0.92 2E-05 46.3 8.3 36 106-148 224-259 (444)
428 PRK12769 putative oxidoreducta 90.9 0.95 2.1E-05 47.8 8.5 72 109-187 326-421 (654)
429 PRK08265 short chain dehydroge 90.9 1.3 2.7E-05 40.5 8.4 38 106-150 2-40 (261)
430 PRK07878 molybdopterin biosynt 90.8 1.1 2.3E-05 44.7 8.3 28 105-133 37-64 (392)
431 PLN02178 cinnamyl-alcohol dehy 90.7 2.1 4.5E-05 41.9 10.2 92 109-211 178-272 (375)
432 PLN02514 cinnamyl-alcohol dehy 90.7 2 4.3E-05 41.4 9.9 94 109-212 180-275 (357)
433 TIGR03451 mycoS_dep_FDH mycoth 90.6 2.5 5.4E-05 40.6 10.5 94 109-212 176-276 (358)
434 TIGR02469 CbiT precorrin-6Y C5 90.6 4.4 9.6E-05 31.9 10.4 93 109-209 19-119 (124)
435 PRK05786 fabG 3-ketoacyl-(acyl 90.6 3.3 7.1E-05 36.7 10.6 38 107-151 2-40 (238)
436 PRK06463 fabG 3-ketoacyl-(acyl 90.5 1.8 3.9E-05 39.1 9.0 37 107-150 4-41 (255)
437 cd05188 MDR Medium chain reduc 90.5 3.7 8E-05 36.4 10.9 94 108-212 133-232 (271)
438 PRK06153 hypothetical protein; 90.5 1.4 3.1E-05 44.3 8.8 87 106-199 172-287 (393)
439 KOG0023 Alcohol dehydrogenase, 90.4 0.91 2E-05 44.7 7.2 123 78-209 126-276 (360)
440 PLN00141 Tic62-NAD(P)-related 90.4 0.73 1.6E-05 42.0 6.3 76 106-188 13-95 (251)
441 PRK15182 Vi polysaccharide bio 90.3 2 4.4E-05 43.3 9.9 96 106-215 310-416 (425)
442 PRK10309 galactitol-1-phosphat 90.3 1.9 4.2E-05 41.0 9.3 47 109-162 160-206 (347)
443 cd08239 THR_DH_like L-threonin 90.3 2.4 5.1E-05 40.0 9.9 93 108-211 162-261 (339)
444 TIGR03316 ygeW probable carbam 89.9 1.1 2.4E-05 44.5 7.5 72 106-186 166-253 (357)
445 COG0289 DapB Dihydrodipicolina 89.9 2.8 6E-05 40.1 9.8 161 111-285 2-179 (266)
446 COG0334 GdhA Glutamate dehydro 89.9 1.1 2.3E-05 45.3 7.4 38 106-150 203-240 (411)
447 TIGR01082 murC UDP-N-acetylmur 89.9 0.94 2E-05 45.4 7.1 64 113-185 1-65 (448)
448 PRK06057 short chain dehydroge 89.9 1.9 4.1E-05 39.0 8.6 37 106-149 3-40 (255)
449 cd08281 liver_ADH_like1 Zinc-d 89.7 2.9 6.3E-05 40.4 10.2 92 109-210 191-288 (371)
450 PRK13394 3-hydroxybutyrate deh 89.7 1.3 2.8E-05 39.8 7.3 38 106-150 3-41 (262)
451 PRK07411 hypothetical protein; 89.6 1.2 2.5E-05 44.5 7.5 88 105-199 33-149 (390)
452 PRK05867 short chain dehydroge 89.6 1.1 2.4E-05 40.5 6.8 38 105-149 4-42 (253)
453 PLN00125 Succinyl-CoA ligase [ 89.5 2.1 4.6E-05 41.5 9.0 90 112-215 13-105 (300)
454 PRK05717 oxidoreductase; Valid 89.3 1.8 4E-05 39.1 8.0 37 106-149 6-43 (255)
455 PRK07825 short chain dehydroge 89.3 2 4.3E-05 39.3 8.3 36 107-149 2-38 (273)
456 cd08234 threonine_DH_like L-th 89.3 2.2 4.9E-05 39.8 8.8 94 109-212 159-257 (334)
457 cd08285 NADP_ADH NADP(H)-depen 89.2 2.8 6E-05 39.8 9.5 94 109-212 166-266 (351)
458 PLN02740 Alcohol dehydrogenase 89.2 2.7 5.8E-05 40.9 9.5 46 109-162 198-244 (381)
459 cd05313 NAD_bind_2_Glu_DH NAD( 89.2 0.69 1.5E-05 43.8 5.2 32 106-144 34-65 (254)
460 COG1004 Ugd Predicted UDP-gluc 89.1 1.2 2.6E-05 44.9 7.0 86 108-210 308-406 (414)
461 TIGR03570 NeuD_NnaD sugar O-ac 89.1 1.7 3.6E-05 37.6 7.3 80 113-200 1-81 (201)
462 TIGR01161 purK phosphoribosyla 89.1 0.62 1.4E-05 45.0 5.0 62 113-184 1-66 (352)
463 PRK10083 putative oxidoreducta 89.1 4.3 9.3E-05 38.1 10.6 94 108-211 159-258 (339)
464 PLN02827 Alcohol dehydrogenase 88.9 3.3 7.1E-05 40.4 10.0 47 109-162 193-239 (378)
465 PRK07523 gluconate 5-dehydroge 88.9 1.4 3.1E-05 39.7 7.0 37 106-149 6-43 (255)
466 cd01491 Ube1_repeat1 Ubiquitin 88.9 1.7 3.7E-05 41.8 7.8 36 105-147 14-50 (286)
467 PRK07774 short chain dehydroge 88.8 3.3 7.1E-05 37.0 9.2 37 106-149 2-39 (250)
468 cd08277 liver_alcohol_DH_like 88.8 4.3 9.3E-05 39.1 10.6 86 108-204 183-277 (365)
469 PRK09242 tropinone reductase; 88.6 3.8 8.3E-05 36.9 9.6 37 107-150 6-43 (257)
470 PRK02705 murD UDP-N-acetylmura 88.5 1.8 3.9E-05 43.2 8.0 67 113-185 2-75 (459)
471 TIGR03649 ergot_EASG ergot alk 88.5 0.66 1.4E-05 42.9 4.6 66 113-188 1-77 (285)
472 cd05283 CAD1 Cinnamyl alcohol 88.5 2.9 6.3E-05 39.5 9.1 94 108-212 168-263 (337)
473 PRK06138 short chain dehydroge 88.4 1.8 3.8E-05 38.7 7.2 37 107-150 2-39 (252)
474 TIGR03201 dearomat_had 6-hydro 88.4 3.4 7.5E-05 39.5 9.6 46 109-162 166-211 (349)
475 PRK12828 short chain dehydroge 88.4 4.7 0.0001 35.3 9.8 37 107-150 4-41 (239)
476 PLN02948 phosphoribosylaminoim 88.3 1 2.2E-05 47.3 6.3 73 105-187 17-92 (577)
477 PRK13984 putative oxidoreducta 88.3 1.8 3.8E-05 45.2 8.1 73 108-187 281-377 (604)
478 PRK08192 aspartate carbamoyltr 88.3 2 4.3E-05 42.3 8.0 71 107-185 156-233 (338)
479 PRK12814 putative NADPH-depend 88.2 2 4.3E-05 45.6 8.4 73 108-187 191-287 (652)
480 PLN02662 cinnamyl-alcohol dehy 88.2 1.9 4.1E-05 40.2 7.5 72 109-187 3-85 (322)
481 PRK12810 gltD glutamate syntha 88.2 2 4.3E-05 43.5 8.1 74 106-186 139-236 (471)
482 PRK08217 fabG 3-ketoacyl-(acyl 88.2 1.8 3.9E-05 38.5 7.0 36 107-149 2-38 (253)
483 PRK06500 short chain dehydroge 88.1 2.4 5.3E-05 37.7 7.9 36 107-149 3-39 (249)
484 PLN02214 cinnamoyl-CoA reducta 88.1 1.9 4.2E-05 41.4 7.7 76 106-188 6-91 (342)
485 PRK06935 2-deoxy-D-gluconate 3 88.1 4.9 0.00011 36.3 10.0 43 100-149 5-48 (258)
486 TIGR02818 adh_III_F_hyde S-(hy 88.1 4 8.7E-05 39.5 10.0 46 109-162 185-231 (368)
487 PRK12409 D-amino acid dehydrog 88.1 0.74 1.6E-05 45.0 4.8 34 111-150 1-34 (410)
488 PRK12825 fabG 3-ketoacyl-(acyl 88.0 4.6 0.0001 35.5 9.5 38 107-151 3-41 (249)
489 PRK06197 short chain dehydroge 88.0 4.6 0.0001 37.8 10.0 46 96-149 3-49 (306)
490 PRK07060 short chain dehydroge 87.7 2.5 5.3E-05 37.6 7.7 37 107-150 6-43 (245)
491 PRK12937 short chain dehydroge 87.7 4.4 9.6E-05 35.9 9.2 37 107-150 2-39 (245)
492 cd08284 FDH_like_2 Glutathione 87.6 7.2 0.00016 36.6 11.1 94 108-212 166-266 (344)
493 PRK07478 short chain dehydroge 87.6 2.1 4.5E-05 38.6 7.2 37 107-150 3-40 (254)
494 PRK07231 fabG 3-ketoacyl-(acyl 87.6 1.2 2.5E-05 39.7 5.5 37 107-150 2-39 (251)
495 PRK06114 short chain dehydroge 87.6 5.9 0.00013 35.8 10.1 38 107-151 5-43 (254)
496 cd08283 FDH_like_1 Glutathione 87.5 5.3 0.00012 38.9 10.5 97 109-212 184-306 (386)
497 KOG3007 Mu-crystallin [Amino a 87.5 0.89 1.9E-05 43.9 4.8 97 112-216 139-241 (333)
498 PLN03209 translocon at the inn 87.4 1 2.2E-05 47.4 5.7 39 106-151 76-115 (576)
499 PRK05876 short chain dehydroge 87.4 2 4.2E-05 39.9 7.0 38 105-149 1-39 (275)
500 PLN02702 L-idonate 5-dehydroge 87.3 4.7 0.0001 38.6 9.8 94 109-212 181-285 (364)
No 1
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=100.00 E-value=9e-43 Score=344.78 Aligned_cols=218 Identities=33% Similarity=0.495 Sum_probs=197.0
Q ss_pred ccccccchhhhhhcccccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021401 71 LLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (313)
Q Consensus 71 ~~~f~~~~~~~~~~~~~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (313)
++|||+++||++.++|..-. . +. |-.|+++...|+| ++|+|||+|+||.++|.+|+++ |++|+++.|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~r-~-~~--r~ef~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvvglr~~ 69 (487)
T PRK05225 1 ANYFNTLNLRQQLAQLGKCR-F-MD--RDEFADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISYALRKE 69 (487)
T ss_pred CCccccccHHHHHHHhccce-e-cc--hhhccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEEecccc
Confidence 48999999999888765433 3 11 2266777899999 9999999999999999999999 99999999986
Q ss_pred -----cccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccC
Q 021401 151 -----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLD 225 (313)
Q Consensus 151 -----~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~ 225 (313)
+++++.|.+.|+. ..+.+|++++||+|++++|+..+..++++++++||+|++|..+|||.+.+. +..
T Consensus 70 ~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~---~i~ 141 (487)
T PRK05225 70 AIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEV---GEQ 141 (487)
T ss_pred ccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeC---cee
Confidence 5788889899996 458999999999999999999877788999999999999999999997554 347
Q ss_pred CCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec--cCCCHHHHHHHHHHHHHcCCCc--eeecChhHHHhhc
Q 021401 226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSD 301 (313)
Q Consensus 226 l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~--~d~~~ea~e~a~~L~~alG~~~--~~~tT~~~e~~~d 301 (313)
+|+|++||.++|++||+.+|++|.+| +|.|++|+++ +|+++.+.|++++|+.++|+.+ +++|||++||+||
T Consensus 142 ~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sD 216 (487)
T PRK05225 142 IRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSD 216 (487)
T ss_pred CCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhc
Confidence 89999999999999999999999998 8999999999 8999999999999999999996 8999999999999
Q ss_pred ccchhhhcccC
Q 021401 302 IFGEREGSLKM 312 (313)
Q Consensus 302 ~~ge~~~l~g~ 312 (313)
|||||+||||+
T Consensus 217 L~GEq~vLcG~ 227 (487)
T PRK05225 217 LMGEQTILCGM 227 (487)
T ss_pred chhhHHHHHhH
Confidence 99999999996
No 2
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.4e-40 Score=313.52 Aligned_cols=187 Identities=40% Similarity=0.656 Sum_probs=177.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
.-|+| |||+|||+|++|.++|+|||++ |.+|++|+|+++.++++|.+.|+. +.+.+|++++||+|+++
T Consensus 14 ~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~ADvim~L 81 (338)
T COG0059 14 DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKRADVVMIL 81 (338)
T ss_pred hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhcCCEEEEe
Confidence 57899 9999999999999999999999 999999999999999999999998 56999999999999999
Q ss_pred ccchhHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021401 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (313)
Q Consensus 186 vP~~a~~~vi~-ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (313)
+||..+.++++ +|.|.|++|+.|..+||+.+.+-. ..+|++++||.+.|++||+.+|++|.+| +|.+++|+
T Consensus 82 ~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~~---i~ppkdvdV~MVAPKgPG~~VR~~y~~G-----~GvP~LiA 153 (338)
T COG0059 82 LPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGL---IVPPKDVDVIMVAPKGPGHLVRREYKEG-----FGVPALIA 153 (338)
T ss_pred CchhhHHHHHHHHhhhhhcCCceEEeccccceecce---ecCCccCcEEEEcCCCCcHHHHHHHHcc-----CCceeEEE
Confidence 99999999998 899999999999999999985443 4778999999999999999999999998 79999999
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCc--eeecChhHHHhhcccchhhhcccC
Q 021401 265 VHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGEREGSLKM 312 (313)
Q Consensus 265 p~~d~~~ea~e~a~~L~~alG~~~--~~~tT~~~e~~~d~~ge~~~l~g~ 312 (313)
++||.++++.+.+++|+.++|+.| +.+|||++|+++||||||+||||.
T Consensus 154 V~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGg 203 (338)
T COG0059 154 VHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGG 203 (338)
T ss_pred EEeCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhH
Confidence 999999999999999999999987 799999999999999999999984
No 3
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=8.8e-39 Score=306.24 Aligned_cols=188 Identities=37% Similarity=0.588 Sum_probs=171.7
Q ss_pred cccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEE
Q 021401 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (313)
Q Consensus 104 ~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIi 183 (313)
....|+| ++|||||+|+||.++|++|+++ |++|++++++ .++.+.+.+.|+. ..+++|++++||+|+
T Consensus 10 ~~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~-----v~sl~Eaak~ADVV~ 76 (335)
T PRK13403 10 NVELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFE-----VMSVSEAVRTAQVVQ 76 (335)
T ss_pred ChhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCE-----ECCHHHHHhcCCEEE
Confidence 3488999 9999999999999999999999 9999888876 4566677778886 348999999999999
Q ss_pred EcccchhHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEE
Q 021401 184 LLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (313)
Q Consensus 184 LavP~~a~~~vi~-ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~i 262 (313)
+++|+..+.++++ +++++||+|++|+.+|||.+.+-+ ..+|++++||.+.|++||+.+|++|.+| .|.+++
T Consensus 77 llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~~---i~pp~~vdv~mvaPKgpG~~vR~~y~~G-----~Gvp~l 148 (335)
T PRK13403 77 MLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDVAMVAPKSPGHLVRRVFQEG-----NGVPAL 148 (335)
T ss_pred EeCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecCc---eeCCCCCeEEEECCCCCChHHHHHHHcC-----CCceeE
Confidence 9999988878886 799999999999999999985543 4778999999999999999999999998 799999
Q ss_pred EEeccCCCHHHHHHHHHHHHHcCCCc--eeecChhHHHhhcccchhhhcccC
Q 021401 263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGEREGSLKM 312 (313)
Q Consensus 263 itp~~d~~~ea~e~a~~L~~alG~~~--~~~tT~~~e~~~d~~ge~~~l~g~ 312 (313)
|+++||.++++.+++++++.++|+.| +++|||++|+++||||||+||||.
T Consensus 149 ~av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg 200 (335)
T PRK13403 149 VAVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGG 200 (335)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHH
Confidence 99999999999999999999999997 899999999999999999999994
No 4
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=7.2e-36 Score=287.66 Aligned_cols=188 Identities=38% Similarity=0.610 Sum_probs=174.1
Q ss_pred cccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEE
Q 021401 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (313)
Q Consensus 104 ~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIi 183 (313)
....|+| ++|||||+|+||.++|++|+++ |++|++++++++++.+.+.+.|+.. .+.++++++||+|+
T Consensus 11 ~~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~~-----~s~~eaa~~ADVVv 78 (330)
T PRK05479 11 DLSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFEV-----LTVAEAAKWADVIM 78 (330)
T ss_pred ChhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCee-----CCHHHHHhcCCEEE
Confidence 3478899 9999999999999999999999 9999888888777788888888863 48899999999999
Q ss_pred EcccchhHHHHH-HHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEE
Q 021401 184 LLISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (313)
Q Consensus 184 LavP~~a~~~vi-~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~i 262 (313)
|++||+.+.+++ ++++++|++|++|+++||+.+.+.+. .+|+++++|++|||+|++.+|+.|+.| +|++++
T Consensus 79 LaVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~~---~p~~~~~Vi~vaPn~Pg~~vr~~~~~G-----~Gv~~l 150 (330)
T PRK05479 79 ILLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQI---VPPADVDVIMVAPKGPGHLVRREYEEG-----GGVPCL 150 (330)
T ss_pred EcCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhcee---ccCCCCcEEEeCCCCCchhhhhhhhcC-----CCceEE
Confidence 999999998898 68999999999999999999877764 678899999999999999999999988 899999
Q ss_pred EEeccCCCHHHHHHHHHHHHHcCCCc--eeecChhHHHhhcccchhhhccc
Q 021401 263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGEREGSLK 311 (313)
Q Consensus 263 itp~~d~~~ea~e~a~~L~~alG~~~--~~~tT~~~e~~~d~~ge~~~l~g 311 (313)
+++++|+++++.+.+++|+.++|+.+ +++|||++|+++||||||+||||
T Consensus 151 ~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~g 201 (330)
T PRK05479 151 IAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCG 201 (330)
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhh
Confidence 99999999999999999999999986 79999999999999999999998
No 5
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=100.00 E-value=1.1e-32 Score=264.19 Aligned_cols=185 Identities=40% Similarity=0.626 Sum_probs=166.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP 187 (313)
|+| ++|+|||+|+||.++|++|+++ |++++++.++++++.+.+.+.|+. ..++.+++++||+|+|++|
T Consensus 1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~-----~~s~~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFK-----VGTVEEAIPQADLIMNLLP 68 (314)
T ss_pred CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCE-----ECCHHHHHhcCCEEEEeCC
Confidence 578 9999999999999999999999 998888888766666777778886 3468889999999999999
Q ss_pred chhHHH-HHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021401 188 DAAQAD-NYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (313)
Q Consensus 188 ~~a~~~-vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (313)
|+.+.. +.+++.+.++++.+|..+||+++.+++. .+|+++++|++|||+|++.+|++|.+| +|++++++++
T Consensus 69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~G-----~G~~~l~a~~ 140 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKEG-----FGVPTLIAVE 140 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhcC-----CCeeEEEEec
Confidence 995555 5568999999999999999999988865 678889999999999999899999998 7999988899
Q ss_pred cCCCHHHHHHHHHHHHHcCCC--ceeecChhHHHhhcccchhhhcccC
Q 021401 267 QDVDGRATNVALGWSVALGSP--FTFATTLEQEYKSDIFGEREGSLKM 312 (313)
Q Consensus 267 ~d~~~ea~e~a~~L~~alG~~--~~~~tT~~~e~~~d~~ge~~~l~g~ 312 (313)
+|+++++.+.+++|+.++|.. .+++|++++|+..|+|+||++|||-
T Consensus 141 ~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs 188 (314)
T TIGR00465 141 QDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGG 188 (314)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhH
Confidence 999999999999999999998 5899999999999999999999983
No 6
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.98 E-value=4.2e-32 Score=237.33 Aligned_cols=161 Identities=44% Similarity=0.721 Sum_probs=135.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP 187 (313)
|+| |+|+|||+|++|.++|+|||++ |++|+++.+++++++++|++.||. ..+.+|++++||+|++++|
T Consensus 2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence 678 9999999999999999999999 999999999999899999999998 4699999999999999999
Q ss_pred chhHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021401 188 DAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (313)
Q Consensus 188 ~~a~~~vi~-ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (313)
|..+.++++ ++.++||+|++|..+||+.+.+-. ..+|++++++.++|++|++.+|++|.+| .|.+++|+++
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~~~---i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~ 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHYGL---IKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHCTT---S---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhcCc---ccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence 999999995 899999999999999999984432 4678899999999999999999999998 7999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCc
Q 021401 267 QDVDGRATNVALGWSVALGSPF 288 (313)
Q Consensus 267 ~d~~~ea~e~a~~L~~alG~~~ 288 (313)
||.++++.+++++|+.++|+.|
T Consensus 142 qD~sg~A~~~ala~A~~iG~~r 163 (165)
T PF07991_consen 142 QDASGKAKELALAYAKAIGGTR 163 (165)
T ss_dssp E-SSS-HHHHHHHHHHHTTHHH
T ss_pred ECCCchHHHHHHHHHHHhCCcC
Confidence 9999999999999999999754
No 7
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.87 E-value=2.2e-21 Score=183.62 Aligned_cols=170 Identities=16% Similarity=0.243 Sum_probs=141.2
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEE-EEEecCCcccHHHHHHCCceecCCCcCCH-HhhhccCCEEEEcccch
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA 189 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~V-ivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~e~i~~ADvIiLavP~~ 189 (313)
++|+|||+|+||+++|+.|++. |+.+ +++.+.+....+.+.+.|++++ ...+. .+.+.++|+||++||..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~d~--~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVIDE--LTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCcccc--cccchhhhhcccCCEEEEeccHH
Confidence 7999999999999999999999 9976 5666666677788888998863 11233 67888999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh-HHHHHHhcccccCCCceEEEEeccC
Q 021401 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAVHQD 268 (313)
Q Consensus 190 a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~-~r~lf~~G~e~~g~G~~~iitp~~d 268 (313)
...++++++.+++|+|++|+|+++++...++......+++.+||+.|| +.|++ ...+|+ +..+++||.+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HP-M~G~~~~~~lf~--------~~~~vltp~~~ 146 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHP-MFGPEADAGLFE--------NAVVVLTPSEG 146 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCC-CCCCcccccccC--------CCEEEEcCCCC
Confidence 999999999999999999999999975444332335566569999999 56763 445555 57999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCceeecChhHHHh
Q 021401 269 VDGRATNVALGWSVALGSPFTFATTLEQEYK 299 (313)
Q Consensus 269 ~~~ea~e~a~~L~~alG~~~~~~tT~~~e~~ 299 (313)
.+.+.++.++++|.++| .++..+|+++|=+
T Consensus 147 ~~~~~~~~~~~~~~~~g-a~~v~~~~eeHD~ 176 (279)
T COG0287 147 TEKEWVEEVKRLWEALG-ARLVEMDAEEHDR 176 (279)
T ss_pred CCHHHHHHHHHHHHHcC-CEEEEcChHHHhH
Confidence 98999999999999999 8899999999943
No 8
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.83 E-value=1.2e-19 Score=170.73 Aligned_cols=149 Identities=20% Similarity=0.297 Sum_probs=122.2
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc----EEEEEecCCcccHHHHH-HCCceecCCCcCCHHhhhccCCEEEEcc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~~e~i~~ADvIiLav 186 (313)
++|+|||+|+||.+++++|.+. |+ ++++. +++.+..+.+. +.|+.. ..+..|++++||+|||++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~-~r~~~~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICS-DLNVSNLKNASDKYGITI----TTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEE-CCCHHHHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEe
Confidence 6899999999999999999987 64 45444 44444444444 467642 457778899999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEe
Q 021401 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (313)
||+...++++++.+.++++++|+ .++|+.+..++. .++...+++|+|||+|... | .|++. +++
T Consensus 72 kP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~~v-------g-----~g~t~-~~~ 135 (272)
T PRK12491 72 KPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPVLV-------G-----EGMSA-LCF 135 (272)
T ss_pred ChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHHHH-------c-----CceEE-EEe
Confidence 99999999999999999998877 788999988886 5555668999999999887 4 67877 678
Q ss_pred ccCCCHHHHHHHHHHHHHcCCC
Q 021401 266 HQDVDGRATNVALGWSVALGSP 287 (313)
Q Consensus 266 ~~d~~~ea~e~a~~L~~alG~~ 287 (313)
.++++.+..+.++.||+.+|..
T Consensus 136 ~~~~~~~~~~~v~~lf~~~G~~ 157 (272)
T PRK12491 136 NEMVTEKDIKEVLNIFNIFGQT 157 (272)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE
Confidence 8889999999999999999954
No 9
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.83 E-value=1.3e-19 Score=170.14 Aligned_cols=171 Identities=16% Similarity=0.155 Sum_probs=128.2
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~ 191 (313)
|+|+|||+|+||+++|+.|++. |++|.+. +++++..+.+.+.|.++. ..+..+.+++||+||+++|+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~-d~~~~~~~~a~~~g~~~~---~~~~~~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGV-SRRESTCERAIERGLVDE---ASTDLSLLKDCDLVILALPIGLL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEE-ECCHHHHHHHHHCCCccc---ccCCHhHhcCCCEEEEcCCHHHH
Confidence 5899999999999999999999 9886544 455566677777886531 22333578999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCCH
Q 021401 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (313)
Q Consensus 192 ~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ 271 (313)
.++++++.+.++++.+|+|+++++...++..... ...||+.||. ++++. ..+..+....+.|.++++||.++.++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~~---~~~~v~~HPm-~G~~~-~g~~~a~~~lf~g~~~~l~p~~~~~~ 145 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEKL---HPRFVGSHPM-AGTAE-SGVEAGQRGLFKNRPWVLTPTENTDL 145 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHHh---hCCceeeCCc-CCCCc-chHHHhhHHHhCCCcEEEccCCCCCH
Confidence 9999999999999999999999986544431111 2359999993 23221 11112222222367999999999999
Q ss_pred HHHHHHHHHHHHcCCCceeecChhHHH
Q 021401 272 RATNVALGWSVALGSPFTFATTLEQEY 298 (313)
Q Consensus 272 ea~e~a~~L~~alG~~~~~~tT~~~e~ 298 (313)
++++.++.+++.+| .+++.+++++|=
T Consensus 146 ~~~~~v~~l~~~lG-~~~v~~~~~~hD 171 (279)
T PRK07417 146 NALAIVEELAVSLG-SKIYTADPEEHD 171 (279)
T ss_pred HHHHHHHHHHHHcC-CEEEEcCHHHHH
Confidence 99999999999999 567788888873
No 10
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.82 E-value=2.7e-19 Score=173.91 Aligned_cols=175 Identities=14% Similarity=0.077 Sum_probs=129.2
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC-CcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a 190 (313)
++|+|||+|+||+++|++|++. |+++.+..+. +......+...|+.+ ....++++++++||+||+++|+..
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVID--ELAADLQRAAAEADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCCc--ccccCHHHHhcCCCEEEEeCCHHH
Confidence 4799999999999999999999 8876555443 222223344445553 223467888999999999999999
Q ss_pred HHHHHHHHHh-cCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCC
Q 021401 191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (313)
Q Consensus 191 ~~~vi~ei~~-~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~ 269 (313)
..++++++.+ .++++++|+|+++++...++.....++...+||+.|| +++.+. ..+..+....+.|..+++||.++.
T Consensus 73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP-MaG~e~-sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP-MAGSHK-SGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC-cCcCch-hhHHHhcHHHHCCCcEEEecCCCC
Confidence 8889999987 4899999999999975433221123455678999999 666542 122222222334678999999999
Q ss_pred CHHHHHHHHHHHHHcCCCceeecChhHH
Q 021401 270 DGRATNVALGWSVALGSPFTFATTLEQE 297 (313)
Q Consensus 270 ~~ea~e~a~~L~~alG~~~~~~tT~~~e 297 (313)
+++.++.+++|++.+| .+++.++.++|
T Consensus 151 ~~~~~~~v~~l~~~lG-a~~v~~~~~~H 177 (359)
T PRK06545 151 DPDAVAELKDLLSGTG-AKFVVLDAEEH 177 (359)
T ss_pred CHHHHHHHHHHHHHcC-CEEEECCHHHH
Confidence 9999999999999999 56667788887
No 11
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.81 E-value=4.4e-19 Score=166.84 Aligned_cols=153 Identities=20% Similarity=0.276 Sum_probs=129.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCC----cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav 186 (313)
+++|||||.|+||.+++.+|.+. | .+|++.++..++....+.++|... ..+..+++.++|+|+|++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEe
Confidence 37999999999999999999999 7 367777766544445777787762 457789999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEe
Q 021401 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (313)
+|+...+++.++.+ ..++++|+ .++|+.+..++. .++ +.+++|+|||+|... | +|++. +++
T Consensus 71 KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~v-------g-----~g~t~-i~~ 132 (266)
T COG0345 71 KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPALV-------G-----AGVTA-ISA 132 (266)
T ss_pred ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHHH-------c-----Cccee-eec
Confidence 99999999999988 66777665 999999999886 666 899999999999988 4 68888 888
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCceeecC
Q 021401 266 HQDVDGRATNVALGWSVALGSPFTFATT 293 (313)
Q Consensus 266 ~~d~~~ea~e~a~~L~~alG~~~~~~tT 293 (313)
..+++++..+.+.+|++.+| ++++.+
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G--~v~~v~ 158 (266)
T COG0345 133 NANVSEEDKAFVEALLSAVG--KVVEVE 158 (266)
T ss_pred CccCCHHHHHHHHHHHHhcC--CeEEec
Confidence 88999999999999999999 555555
No 12
>PLN02256 arogenate dehydrogenase
Probab=99.81 E-value=6.9e-19 Score=168.27 Aligned_cols=169 Identities=15% Similarity=0.077 Sum_probs=128.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEccc
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLIS 187 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i-~~ADvIiLavP 187 (313)
++ ++|+|||+|+||+++|+.|++. |++|++..++. ..+.+.+.|+.. ..+.++++ .++|+|++|+|
T Consensus 35 ~~-~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVilavp 101 (304)
T PLN02256 35 RK-LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLCTS 101 (304)
T ss_pred CC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEecC
Confidence 55 8999999999999999999998 88876555443 235666778753 45777776 47999999999
Q ss_pred chhHHHHHHHH-HhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021401 188 DAAQADNYEKI-FSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (313)
Q Consensus 188 ~~a~~~vi~ei-~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (313)
+....++++++ .++++++++|+|+++++...++.....++.+.+||++||+.....-... .++.++++++.
T Consensus 102 ~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~--------~~~~~~~~~~~ 173 (304)
T PLN02256 102 ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGG--------WAGLPFVYDKV 173 (304)
T ss_pred HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccc--------cCCCeEEEecc
Confidence 99999999988 6889999999999987532222111255667889999996633321112 23567777764
Q ss_pred ----cCCCHHHHHHHHHHHHHcCCCceeecChhHHHh
Q 021401 267 ----QDVDGRATNVALGWSVALGSPFTFATTLEQEYK 299 (313)
Q Consensus 267 ----~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~~ 299 (313)
.+.++++++.++++|+.+| .+++++|+++|-+
T Consensus 174 ~i~~~~~~~~~~~~l~~l~~~lG-a~v~~~~~eeHD~ 209 (304)
T PLN02256 174 RIGDEGEREARCERFLDIFEEEG-CRMVEMSCEEHDR 209 (304)
T ss_pred eecCCCCCHHHHHHHHHHHHHCC-CEEEEeCHHHHhH
Confidence 5667889999999999999 8899999999964
No 13
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.80 E-value=1.6e-18 Score=162.03 Aligned_cols=164 Identities=18% Similarity=0.204 Sum_probs=125.8
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~ 189 (313)
|+|+|||+|+||+++|++|++. |+ +| +++++++...+.+.+.|+.+. ..+..++. ++|+||+++|+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v-~~~d~~~~~~~~~~~~g~~~~---~~~~~~~~-~aD~Vilavp~~ 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK------GLISKV-YGYDHNELHLKKALELGLVDE---IVSFEELK-KCDVIFLAIPVD 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc------CCCCEE-EEEcCCHHHHHHHHHCCCCcc---cCCHHHHh-cCCEEEEeCcHH
Confidence 5899999999999999999988 75 44 455555556667777887531 34666755 599999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCC------CchhHHHHHHhcccccCCCceEEE
Q 021401 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (313)
Q Consensus 190 a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~------pg~~~r~lf~~G~e~~g~G~~~ii 263 (313)
...+++.++.+ ++++++|+|+++++....+..... ....||+.||+. |.....++|+ |..+++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~--~~~~~v~~hPmaG~e~~Gp~~a~~~l~~--------g~~~il 138 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH--IRKNFIAAHPMAGTENSGPKAAIKGLYE--------GKVVVL 138 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh--cCCCEEecCCcCcCchhhHHhccHHHhC--------CCeEEE
Confidence 99999999999 999999999888764333211011 125799999973 4444445665 578889
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCceeecChhHHH
Q 021401 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (313)
Q Consensus 264 tp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~ 298 (313)
|+.++.+++.++.++.+++.+| .+++.+++++|=
T Consensus 139 ~~~~~~~~~~~~~v~~l~~~~G-~~~~~~~~~~hD 172 (275)
T PRK08507 139 CDVEKSGEKHQERAKEIFSGLG-MRIVYMDAKEHD 172 (275)
T ss_pred ecCCCCCHHHHHHHHHHHHHhC-CEEEEeCHHHHH
Confidence 9988888999999999999999 678888888873
No 14
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.79 E-value=1e-18 Score=171.29 Aligned_cols=151 Identities=15% Similarity=0.106 Sum_probs=118.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021401 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (313)
Q Consensus 112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a 190 (313)
++|+|||+ |+||+++|+.|++. .+++| ++.++.. .+ ..+.++.+++||+||||+|+..
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-----~~~~V-~g~D~~d--------~~-------~~~~~~~v~~aDlVilavPv~~ 63 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-----MQLEV-IGHDPAD--------PG-------SLDPATLLQRADVLIFSAPIRH 63 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCCEE-EEEcCCc--------cc-------cCCHHHHhcCCCEEEEeCCHHH
Confidence 79999999 99999999999974 06665 4555420 11 2367788999999999999999
Q ss_pred HHHHHHHHHhc---CCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021401 191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (313)
Q Consensus 191 ~~~vi~ei~~~---mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (313)
..++++++.++ +++|++|+|+++++...++. ..+...+||+.|| +.|++..++| +|.++++||..
T Consensus 64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HP-MaG~E~s~lf--------~g~~~iltp~~ 131 (370)
T PRK08818 64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHP-MTAPPKSPTL--------KGRVMVVCEAR 131 (370)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCC-CCCCCCCccc--------CCCeEEEeCCC
Confidence 99999998875 89999999999998544433 1233467999999 6666533344 46899999875
Q ss_pred CCCHHHHHHHHHHHHHcCCCceeecChhHHH
Q 021401 268 DVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (313)
Q Consensus 268 d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~ 298 (313)
+ .+.++.+++|++.+| .+++.+|+++|=
T Consensus 132 ~--~~~~~~v~~l~~~~G-a~v~~~~aeeHD 159 (370)
T PRK08818 132 L--QHWSPWVQSLCSALQ-AECVYATPEHHD 159 (370)
T ss_pred c--hhHHHHHHHHHHHcC-CEEEEcCHHHHH
Confidence 4 456788999999999 689999999993
No 15
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.78 E-value=8.4e-18 Score=157.66 Aligned_cols=158 Identities=13% Similarity=0.163 Sum_probs=123.4
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCC----cEEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav 186 (313)
|+|+|||+|+||.+++++|.+. | .++++.+|..++.. ..+.+.|+.. ..++.+++++||+|||++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILFLAM 73 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEEEEe
Confidence 8999999999999999999987 6 46666665443322 3334457642 457788899999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe-cCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEe
Q 021401 187 SDAAQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLid~-~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (313)
||+...++++++.+.++++++|+++ +|+.+..+++ .++.+.++++.|||.|... + .|.+ ++++
T Consensus 74 ~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~~-------~-----~~~t-~~~~ 137 (279)
T PRK07679 74 KPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAAI-------L-----KSAT-AISP 137 (279)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHHH-------h-----cccE-EEee
Confidence 9999999999999889999998875 9998877765 4455678999999987766 2 3566 4778
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCceeecChhHHH
Q 021401 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (313)
Q Consensus 266 ~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~ 298 (313)
.++.+++..+.++.||+.+|. .+..+ |+++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~--~~~v~-e~~~ 167 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGL--VSVVE-EEDM 167 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCc--EEEeC-HHHh
Confidence 888889999999999999995 44444 4444
No 16
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.77 E-value=9.8e-18 Score=159.05 Aligned_cols=169 Identities=18% Similarity=0.242 Sum_probs=130.2
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~ 189 (313)
++|+|||+|+||.++|+.|++. |+ +|++. +++++..+.+.+.|..+ ....+.+++++++|+||+++|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~-dr~~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGA-DRSAETRARARELGLGD--RVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEE-ECCHHHHHHHHhCCCCc--eecCCHHHHhcCCCEEEECCCHH
Confidence 8999999999999999999988 75 55544 44455566777777642 12346778899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCC------CchhHHHHHHhcccccCCCceEEE
Q 021401 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (313)
Q Consensus 190 a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~------pg~~~r~lf~~G~e~~g~G~~~ii 263 (313)
...++++++.+.++++.+|+|+++++...++.....+++++.|+..||.. |+....++|. |.++++
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~--------g~~~~l 149 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFE--------NRWCIL 149 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHC--------CCeEEE
Confidence 88889999999999999999999987433332112345677899999953 2222334554 578999
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCceeecChhHHH
Q 021401 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (313)
Q Consensus 264 tp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~ 298 (313)
++....++++++.++.+++.+| .+++.+++++|=
T Consensus 150 ~~~~~~~~~~~~~~~~l~~~lG-~~~~~~~~~~hD 183 (307)
T PRK07502 150 TPPEGTDPAAVARLTAFWRALG-ARVEEMDPEHHD 183 (307)
T ss_pred eCCCCCCHHHHHHHHHHHHHcC-CEEEEcCHHHHh
Confidence 9988888999999999999999 467788888873
No 17
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.77 E-value=2.6e-18 Score=160.12 Aligned_cols=162 Identities=20% Similarity=0.212 Sum_probs=118.0
Q ss_pred HHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHhcCCC
Q 021401 126 QAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKP 204 (313)
Q Consensus 126 lA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~ 204 (313)
+|+.|++. |. ..+++.++++...+.|++.|+.++ ..+..+.++++|+||||+|+....++++++.+++++
T Consensus 1 ~A~aL~~~------g~~~~v~g~d~~~~~~~~a~~~g~~~~---~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~ 71 (258)
T PF02153_consen 1 IALALRKA------GPDVEVYGYDRDPETLEAALELGIIDE---ASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLKP 71 (258)
T ss_dssp HHHHHHHT------TTTSEEEEE-SSHHHHHHHHHTTSSSE---EESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-T
T ss_pred ChHHHHhC------CCCeEEEEEeCCHHHHHHHHHCCCeee---ccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCC
Confidence 57888888 73 235788888888899999999853 223367899999999999999999999999999999
Q ss_pred CcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHc
Q 021401 205 NSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL 284 (313)
Q Consensus 205 gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~al 284 (313)
|++|+|++|++...++.....++.+.+||++|| +.|++ +..|.......+.|.++++||..+.+.++++.+++||+.+
T Consensus 72 ~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP-M~G~e-~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~ 149 (258)
T PF02153_consen 72 GAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP-MAGPE-KSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEAL 149 (258)
T ss_dssp TSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE-SCSTS-SSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHC
T ss_pred CcEEEEeCCCCHHHHHHHHHhcCcccceeecCC-CCCCc-cccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHC
Confidence 999999999974333221224567899999999 66664 2233333444455789999999998899999999999999
Q ss_pred CCCceeecChhHHHh
Q 021401 285 GSPFTFATTLEQEYK 299 (313)
Q Consensus 285 G~~~~~~tT~~~e~~ 299 (313)
|+ +++.+|+++|=+
T Consensus 150 Ga-~~~~~~~eeHD~ 163 (258)
T PF02153_consen 150 GA-RVVEMDAEEHDR 163 (258)
T ss_dssp T--EEEE--HHHHHH
T ss_pred CC-EEEEcCHHHHHH
Confidence 95 788999999943
No 18
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.77 E-value=2.1e-17 Score=152.97 Aligned_cols=153 Identities=17% Similarity=0.214 Sum_probs=120.9
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc----EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP 187 (313)
|+|+|||+|+||.+++++|.+. |+ ++++.++++.+..+.+.+.|+.. ..+..++++++|+||+++|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNPARRDVFQSLGVKT----AASNTEVVKSSDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCHHHHHHHHHcCCEE----eCChHHHHhcCCEEEEEEC
Confidence 6899999999999999999998 86 66666355455555666678753 4577888999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021401 188 DAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (313)
Q Consensus 188 ~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (313)
|+...++++++.+.++++++|+ +++|+++..++. .++.. ++++.|||.|... | .+. ..++..
T Consensus 71 ~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~~-------~-----~~~-~~l~~~ 133 (266)
T PLN02688 71 PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCLV-------G-----EAA-SVMSLG 133 (266)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHHH-------h-----Cce-EEEEeC
Confidence 9998899999988889998765 678888766664 33333 7999999998876 2 234 447777
Q ss_pred cCCCHHHHHHHHHHHHHcCCCceeecC
Q 021401 267 QDVDGRATNVALGWSVALGSPFTFATT 293 (313)
Q Consensus 267 ~d~~~ea~e~a~~L~~alG~~~~~~tT 293 (313)
...+++..+.++.+++.+|. ++..+
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~--~~~~~ 158 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK--IWVVD 158 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC--EEEeC
Confidence 78889999999999999995 65554
No 19
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.75 E-value=2.7e-17 Score=164.29 Aligned_cols=163 Identities=17% Similarity=0.190 Sum_probs=130.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021401 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (313)
Q Consensus 112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a 190 (313)
|+|+||| +|.||+++|+.|++. |++|++..+..+...+.+.+.|+.. ..+..++++++|+|++++|+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence 6899997 899999999999999 9887766655433345666677642 3477888999999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021401 191 QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (313)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (313)
..++++++.+.++++++|+|+++++. ..+.. .++.+..||+.||. .|+.. .+| .|..++++|.+
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HPm-aGp~~-~~~--------~g~~~il~p~~ 137 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHPM-FGPRT-PSL--------KGQVVILTPTE 137 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCCC-CCCCC-ccc--------CCCEEEEecCC
Confidence 88899999999999999999998753 33333 45667899999993 34331 123 35688899998
Q ss_pred CCCHHHHHHHHHHHHHcCCCceeecChhHHH
Q 021401 268 DVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (313)
Q Consensus 268 d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~ 298 (313)
+.++++.+.+.++|+.+| .+++.+++++|-
T Consensus 138 ~~~~~~~~~v~~ll~~~G-~~v~~~~~e~HD 167 (437)
T PRK08655 138 KRSNPWFDKVKNFLEKEG-ARVIVTSPEEHD 167 (437)
T ss_pred CCCHHHHHHHHHHHHHcC-CEEEECCHHHHH
Confidence 888999999999999999 567889999984
No 20
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.74 E-value=4.4e-17 Score=153.20 Aligned_cols=152 Identities=16% Similarity=0.175 Sum_probs=118.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCC----cEEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~-A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
|++|+|||+|+||.+++++|.+. | .++++..++.+...+. ..+.+... ...+..++++++|+||++
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~---~~~~~~e~~~~aDvVila 71 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVE---LADNEAEIFTKCDHSFIC 71 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeE---EeCCHHHHHhhCCEEEEe
Confidence 57899999999999999999987 6 4666666544332222 22232111 134777889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021401 186 ISDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (313)
+|++...++++++.++++++++|+ .+.|+.+..++. .+|. .++||+|||+|... | +|++. ++
T Consensus 72 vpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~~~-------g-----~g~t~-~~ 134 (277)
T PRK06928 72 VPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTSAV-------G-----VGTSL-VA 134 (277)
T ss_pred cCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHHHH-------h-----hhcEE-Ee
Confidence 999999999999999898887654 788999888876 4453 58999999999887 4 57776 77
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCc
Q 021401 265 VHQDVDGRATNVALGWSVALGSPF 288 (313)
Q Consensus 265 p~~d~~~ea~e~a~~L~~alG~~~ 288 (313)
+..+++++..+.++.++..+|...
T Consensus 135 ~~~~~~~~~~~~v~~l~~~~G~~~ 158 (277)
T PRK06928 135 HAETVNEANKSRLEETLSHFSHVM 158 (277)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCEE
Confidence 888899999999999999999443
No 21
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.71 E-value=2.2e-16 Score=147.06 Aligned_cols=144 Identities=19% Similarity=0.267 Sum_probs=113.2
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc----EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP 187 (313)
++|+|||+|+||++++++|.+. +. ++++ .+++.+. .++.. ..++.++++++|+|||++|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~-~~~~~~~------~~~~~----~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYY-HTPSKKN------TPFVY----LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCCCcceEEE-ECCChhc------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999987 52 3444 4433221 23331 3477788899999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021401 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (313)
Q Consensus 188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (313)
|+...++++++.++++++.+|++++|+++..++. .++....+++.|||.|... | .| .+.+++.+
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p~~~-------g-----~g-~t~i~~~~ 130 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTPSLV-------G-----QG-SLVFCANN 130 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCchhHh-------c-----ce-eEEEEeCC
Confidence 9999999999999888777788999999877775 4555557899999998544 2 33 45588988
Q ss_pred CCCHHHHHHHHHHHHHcCCCc
Q 021401 268 DVDGRATNVALGWSVALGSPF 288 (313)
Q Consensus 268 d~~~ea~e~a~~L~~alG~~~ 288 (313)
+++.+..+.++.+|+.+|...
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~~ 151 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGIIQ 151 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcEE
Confidence 899999999999999999443
No 22
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.71 E-value=2.5e-16 Score=145.85 Aligned_cols=148 Identities=18% Similarity=0.252 Sum_probs=114.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCC---cEEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhhccCCEEEEcc
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G---~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~e~i~~ADvIiLav 186 (313)
+++|+|||+|+||.++++.|.+. | .+|.+..|+ .+..+...+ .|+.. ..+.+++++++|+|++++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~-~~~~~~~~~~~g~~~----~~~~~~~~~~advVil~v 70 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPS-PEKRAALAEEYGVRA----ATDNQEAAQEADVVVLAV 70 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCC-HHHHHHHHHhcCCee----cCChHHHHhcCCEEEEEc
Confidence 48999999999999999999988 7 456555554 333444433 36542 357778889999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021401 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (313)
|+....++++++.+++ +..+|.+++|+....++. .++.+.++++.|||.|... + .|. ..+++.
T Consensus 71 ~~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~~~-------~-----~~~-~~i~~~ 133 (267)
T PRK11880 71 KPQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPALV-------G-----AGM-TALTAN 133 (267)
T ss_pred CHHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchHHH-------c-----Cce-EEEecC
Confidence 9999999999988877 334556889998776664 4555678999999987543 2 234 457888
Q ss_pred cCCCHHHHHHHHHHHHHcCC
Q 021401 267 QDVDGRATNVALGWSVALGS 286 (313)
Q Consensus 267 ~d~~~ea~e~a~~L~~alG~ 286 (313)
++.++++.+.++.|++.+|.
T Consensus 134 ~~~~~~~~~~v~~l~~~lG~ 153 (267)
T PRK11880 134 ALVSAEDRELVENLLSAFGK 153 (267)
T ss_pred CCCCHHHHHHHHHHHHhCCe
Confidence 88999999999999999995
No 23
>PLN02712 arogenate dehydrogenase
Probab=99.70 E-value=3.1e-16 Score=163.97 Aligned_cols=173 Identities=13% Similarity=0.073 Sum_probs=123.4
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEE
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~-~ADvIi 183 (313)
..++.+ ++|||||+|+||+++|++|++. |++|++..+. ... +.+.+.|+.. ..+.++++. ++|+||
T Consensus 364 ~~~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~-~~~-~~a~~~Gv~~----~~~~~el~~~~aDvVI 430 (667)
T PLN02712 364 VNDGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRS-DYS-DEAQKLGVSY----FSDADDLCEEHPEVIL 430 (667)
T ss_pred cCCCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECC-hHH-HHHHHcCCeE----eCCHHHHHhcCCCEEE
Confidence 456788 9999999999999999999998 9887755554 332 4566778753 457788775 599999
Q ss_pred EcccchhHHHHHHHHHh-cCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCc
Q 021401 184 LLISDAAQADNYEKIFS-CMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (313)
Q Consensus 184 LavP~~a~~~vi~ei~~-~mk~gaiLid~~Gv~---l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~ 259 (313)
+|+|+....++++++.. .+++|++|+|+++++ +..+.. .++.+.+||+.||+.....-+..|.+ ......+.
T Consensus 431 LavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G~e~~~~G~~~-~~~lf~~~ 506 (667)
T PLN02712 431 LCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFGPESGKNGWNN-LAFVFDKV 506 (667)
T ss_pred ECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCCccccccchhh-hhhhccCc
Confidence 99999998899998775 799999999998874 233333 55677899999996543321111221 11111221
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHcCCCceeecChhHHH
Q 021401 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (313)
Q Consensus 260 ~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~ 298 (313)
+...+....+.++.++++|..+| .+++++|+++|-
T Consensus 507 ---~v~~~~~~~~~~~~l~~l~~~lG-a~vv~ms~eeHD 541 (667)
T PLN02712 507 ---RIGSDDRRVSRCDSFLDIFAREG-CRMVEMSCAEHD 541 (667)
T ss_pred ---EeCCCcchHHHHHHHHHHHHHcC-CEEEEeCHHHHH
Confidence 12222334456677789999999 688899999995
No 24
>PLN02712 arogenate dehydrogenase
Probab=99.68 E-value=9.2e-16 Score=160.44 Aligned_cols=166 Identities=17% Similarity=0.139 Sum_probs=122.5
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEcccchh
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i-~~ADvIiLavP~~a 190 (313)
++|||||+|+||+++|++|++. |++|++..+. ...+.+.+.|+.. ..+.++++ +++|+|+||+|+..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~--~~~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~ 120 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRS--DHSLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS 120 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCC--HHHHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence 8999999999999999999999 9887655554 2235677788763 45777755 57999999999998
Q ss_pred HHHHHHHHH-hcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHH-HHHHhcccccCCCceEEEEe---
Q 021401 191 QADNYEKIF-SCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR-RLYVQGKEINGAGINSSFAV--- 265 (313)
Q Consensus 191 ~~~vi~ei~-~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r-~lf~~G~e~~g~G~~~iitp--- 265 (313)
..++++++. +++++|++|+|+++++....+.....++++.+||+.||+. |++.. ..+. |..++|++
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMa-G~e~~~~g~~--------~~~~~~~~~~~ 191 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMF-GPQSAKHGWD--------GLRFVYEKVRI 191 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcC-CCccccchhc--------cCcEEEeeccC
Confidence 889999875 7899999999999987422221112556778999999943 55421 1222 34566663
Q ss_pred -ccCCCHHHHHHHHHHHHHcCCCceeecChhHHHh
Q 021401 266 -HQDVDGRATNVALGWSVALGSPFTFATTLEQEYK 299 (313)
Q Consensus 266 -~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~~ 299 (313)
++....+.++.++++|+.+| .+++++|+++|-+
T Consensus 192 ~~~~~~~~~~~~l~~l~~~lG-a~v~~ms~eeHD~ 225 (667)
T PLN02712 192 GNEELRVSRCKSFLEVFEREG-CKMVEMSCTEHDK 225 (667)
T ss_pred CCccccHHHHHHHHHHHHHcC-CEEEEeCHHHHHH
Confidence 33333456777889999999 6899999999853
No 25
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.67 E-value=1.9e-15 Score=137.91 Aligned_cols=151 Identities=16% Similarity=0.205 Sum_probs=115.3
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc---E-EEEEecCCcccH-HHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---V-VKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~---~-Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav 186 (313)
++|+|||.|+||.++++++.+. +. + +++..|++.+.. +.+.+.++.. ..+.+++++++|+|++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence 7899999999999999999876 52 3 444555443333 3334456542 457888999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEe
Q 021401 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiL-id~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (313)
|++.+.++++++.++++ +++| ..++|+.+..++. .++.+..++++|||.+... | .|.+. ++.
T Consensus 75 p~~~~~~v~~~l~~~~~-~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~~v-------~-----~g~~~-~~~ 137 (245)
T PRK07634 75 PPSAHEELLAELSPLLS-NQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAAEI-------G-----KSISL-YTM 137 (245)
T ss_pred CHHHHHHHHHHHHhhcc-CCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHHHH-------h-----cCCeE-Eee
Confidence 99999999999888776 4554 4788999888876 5566668999999987654 3 46777 455
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCce
Q 021401 266 HQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 266 ~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
..+.+++..+.++++++.+|....
T Consensus 138 ~~~~~~~~~~~v~~lf~~~G~~~~ 161 (245)
T PRK07634 138 GQSVNETHKETLQLILKGIGTSQL 161 (245)
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEE
Confidence 567889999999999999996553
No 26
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.66 E-value=1.6e-15 Score=148.68 Aligned_cols=149 Identities=14% Similarity=0.113 Sum_probs=111.7
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccc
Q 021401 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (313)
Q Consensus 110 GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~ 188 (313)
.+++|+||| +|+||+++|+.|++. |++|.+..+.. . .+.++++++||+||+|+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~-----------~-------~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDD-----------W-------DRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCc-----------c-------hhHHHHHhcCCEEEEeCcH
Confidence 448999999 999999999999999 99876665431 0 1456788999999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC
Q 021401 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (313)
Q Consensus 189 ~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (313)
....++++++.+ +++|++|+|+++++...........+ ..||+.||. .|+.. ..| .|..+++++ .
T Consensus 153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm-~G~~~-~~~--------~~~~vv~~~--~ 217 (374)
T PRK11199 153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPM-FGPDV-GSL--------AKQVVVVCD--G 217 (374)
T ss_pred HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCC-CCCCC-ccc--------CCCEEEEcC--C
Confidence 999999999888 99999999999985422221111222 269999993 33331 112 234454443 4
Q ss_pred CCHHHHHHHHHHHHHcCCCceeecChhHHH
Q 021401 269 VDGRATNVALGWSVALGSPFTFATTLEQEY 298 (313)
Q Consensus 269 ~~~ea~e~a~~L~~alG~~~~~~tT~~~e~ 298 (313)
.++++++.++.+++.+| .+++.+|+++|=
T Consensus 218 ~~~~~~~~~~~l~~~lG-~~v~~~~~~~HD 246 (374)
T PRK11199 218 RQPEAYQWLLEQIQVWG-ARLHRISAVEHD 246 (374)
T ss_pred CCchHHHHHHHHHHHCC-CEEEECCHHHHH
Confidence 55788999999999999 688999999984
No 27
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.64 E-value=7.1e-15 Score=154.42 Aligned_cols=164 Identities=18% Similarity=0.226 Sum_probs=126.4
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~ 189 (313)
++|+|||+|+||.++++.+++. |+ +|++ ++++++..+.+.+.|+.. ....+.+++++++|+|++++|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~-~d~~~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER------GLAREVVA-VDRRAKSLELAVSLGVID--RGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEE-EECChhHHHHHHHCCCCC--cccCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999998 84 5544 455455566777788752 12346788899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCC-CccEEEeccCCCchh-------HHHHHHhcccccCCC
Q 021401 190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPK-NIGVIAVCPKGMGPS-------VRRLYVQGKEINGAG 258 (313)
Q Consensus 190 a~~~vi~ei~~~mk~gaiLid~~Gv~---l~~~~~~~~~l~~-~i~vV~vhPn~pg~~-------~r~lf~~G~e~~g~G 258 (313)
...++++++.++++++.+|+|++|++ +..++. .++. .++|+..||.. +.+ ...+|. +
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~~~~r~~~~hPm~-G~~~~g~~~a~~~l~~--------~ 142 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGELPAGFVPGHPIA-GSEKSGVHAANADLFR--------N 142 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccccCCeEEecCCcC-cCCcchhhhhhhHHhC--------C
Confidence 88889999999999999999999987 444443 3332 45677778832 222 234554 4
Q ss_pred ceEEEEeccCCCHHHHHHHHHHHHHcCCCceeecChhHH
Q 021401 259 INSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE 297 (313)
Q Consensus 259 ~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e 297 (313)
.++++++..+.+++..+.+++|++.+| .+++.++.++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~~~G-~~~~~~~~~~h 180 (735)
T PRK14806 143 HKVILTPLAETDPAALARVDRLWRAVG-ADVLHMDVAHH 180 (735)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHcC-CEEEEcCHHHH
Confidence 688899999999999999999999999 56777777776
No 28
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.63 E-value=2.6e-15 Score=145.05 Aligned_cols=168 Identities=24% Similarity=0.249 Sum_probs=121.3
Q ss_pred ccccchhhhhhcCCCccc-----ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH
Q 021401 85 SLANRDEFIVRGGRDLFK-----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (313)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~-----~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~ 159 (313)
++..+++. +|.|.|... +...++.| ||+||||+|.||+++|+.++.+ ||+|++..++.. .+...+
T Consensus 117 ~~~~~~~~-~r~g~w~~~~~~~~~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~ 186 (324)
T COG1052 117 RIHEGDRR-VREGNWSLSGGPDPLLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKE 186 (324)
T ss_pred chHHHHHH-HhcCcccccCCcccccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhh
Confidence 57778888 999999765 34569999 9999999999999999999999 999877776643 222233
Q ss_pred CCceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCc
Q 021401 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNI 230 (313)
Q Consensus 160 ~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i 230 (313)
.++. ..+++|++++||+|+|+||.+..+. +++ +.++.||+|++|+.++ |-. +..+++ +.+.....
T Consensus 187 ~~~~-----y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~-g~i~gagl 260 (324)
T COG1052 187 LGAR-----YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKS-GKIAGAGL 260 (324)
T ss_pred cCce-----eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh-CCcceEEe
Confidence 3344 3469999999999999999999876 887 8999999999999654 532 233433 33444578
Q ss_pred cEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHHH
Q 021401 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (313)
Q Consensus 231 ~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~ 276 (313)
+|+--+|........++-. . -+.+++||. ..+.++++.
T Consensus 261 DV~e~Ep~~~d~~l~~l~~-------~-~~vvltPHia~at~ea~~~ 299 (324)
T COG1052 261 DVFENEPALFDHPLLRLDN-------F-PNVVLTPHIASATEEARKA 299 (324)
T ss_pred eecCCCCCCCChhHhhccC-------C-CCEEEccccccccHHHHHH
Confidence 8888999654333222111 1 358899987 333444433
No 29
>PRK07680 late competence protein ComER; Validated
Probab=99.63 E-value=7e-15 Score=137.40 Aligned_cols=146 Identities=16% Similarity=0.173 Sum_probs=109.2
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc----EEEEEecCCcccHHHH-HHC-CceecCCCcCCHHhhhccCCEEEEc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEA-RAA-GFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~A-~~~-G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
|+|+|||+|+||.+++++|.+. |. +|.+..|+ .+..+.. .+. |+.. ..+..++++++|+|||+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~-~~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVila 69 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRT-PAKAYHIKERYPGIHV----AKTIEEVISQSDLIFIC 69 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCC-HHHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEe
Confidence 5799999999999999999988 73 45555554 3333332 223 5542 34778889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEE-ecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021401 186 ISDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~mk~gaiLid-~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (313)
+||+...++++++.++++++++|++ ++|+.+..++. .++ ..++++|||++... + .|... ++
T Consensus 70 v~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~~~-------~-----~G~t~-~~ 131 (273)
T PRK07680 70 VKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITNRA-------L-----SGASL-FT 131 (273)
T ss_pred cCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHHHH-------h-----hccEE-Ee
Confidence 9999999999999999988888775 55687777765 334 36899999877443 1 34554 45
Q ss_pred eccCCCHHHHHHHHHHHHHcCC
Q 021401 265 VHQDVDGRATNVALGWSVALGS 286 (313)
Q Consensus 265 p~~d~~~ea~e~a~~L~~alG~ 286 (313)
...+.+.+..+.++.++..+|.
T Consensus 132 ~g~~~~~~~~~~~~~ll~~~G~ 153 (273)
T PRK07680 132 FGSRCSEEDQQKLERLFSNIST 153 (273)
T ss_pred eCCCCCHHHHHHHHHHHHcCCC
Confidence 5666778888999999999994
No 30
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.62 E-value=2.9e-15 Score=144.70 Aligned_cols=157 Identities=22% Similarity=0.245 Sum_probs=117.9
Q ss_pred ccccchhhhhhcCCCccc-ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021401 85 SLANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (313)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~-~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (313)
++..|++. +|+|+|+.. ..-.+|.| ||+||||+|.||+.+|+.++.+ |++|+.+++..++. .+...+..
T Consensus 117 ~~~~~~~~-~~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~~--~~~~~~~~ 186 (324)
T COG0111 117 RIPDADAS-QRRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPRE--RAGVDGVV 186 (324)
T ss_pred CchhhHHH-HHcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCchh--hhccccce
Confidence 57788888 799999862 34469999 9999999999999999999999 99986665533332 23334444
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEE
Q 021401 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIA 234 (313)
Q Consensus 164 ~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~ 234 (313)
. ..++++++++||+|++|+|.+..++ +++ +.+..||+|++++.++ |-. +..+++ +.+....++|..
T Consensus 187 ~----~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~-G~i~gA~lDVf~ 261 (324)
T COG0111 187 G----VDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDS-GKIAGAALDVFE 261 (324)
T ss_pred e----cccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHc-CCcceEEecCCC
Confidence 2 4589999999999999999999876 887 8999999999999764 532 233433 333345688888
Q ss_pred eccCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021401 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (313)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (313)
.+|..+.+. ++.. -|.++|||-
T Consensus 262 ~EPl~~~~p---L~~~--------pnV~~TPHi 283 (324)
T COG0111 262 EEPLPADSP---LWDL--------PNVILTPHI 283 (324)
T ss_pred CCCCCCCCh---hhcC--------CCeEECCcc
Confidence 999776633 4442 478889986
No 31
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.58 E-value=2.5e-14 Score=132.53 Aligned_cols=143 Identities=16% Similarity=0.143 Sum_probs=103.1
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcE---EEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhccCCEEEEccc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~---Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~i~~ADvIiLavP 187 (313)
|+|||||+|+||.+++++|++. |+. +.+..|..++..+.+.+. |+.. ..+..++++++|+|++++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence 5899999999999999999987 653 334444332222333333 3432 4578888999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021401 188 DAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (313)
Q Consensus 188 ~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (313)
|+...++++++ .++++++|+ +++|+++..++. .++.+..+++.|||.|... + .|.+. +++.
T Consensus 71 p~~~~~vl~~l--~~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a~-------~-----~g~t~-~~~~ 132 (258)
T PRK06476 71 PQIAEEVLRAL--RFRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVAE-------R-----KGVTA-IYPP 132 (258)
T ss_pred HHHHHHHHHHh--ccCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhhh-------C-----CCCeE-ecCC
Confidence 98888888876 257787766 678888888875 4455578999999988775 2 35656 4432
Q ss_pred cCCCHHHHHHHHHHHHHcCCCce
Q 021401 267 QDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 267 ~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
.+.++.+++.+|....
T Consensus 133 -------~~~~~~l~~~lG~~~~ 148 (258)
T PRK06476 133 -------DPFVAALFDALGTAVE 148 (258)
T ss_pred -------HHHHHHHHHhcCCcEE
Confidence 1578999999996543
No 32
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.57 E-value=1e-14 Score=139.76 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=114.7
Q ss_pred cccchhhhhhcCCCcccc-------cccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH
Q 021401 86 LANRDEFIVRGGRDLFKL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR 158 (313)
Q Consensus 86 ~~~~~e~~v~~G~w~f~~-------~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~ 158 (313)
+..+++. +|+|+|.... ...+|.| +++||||+|.||+.+|+.++.+ |++|+++++.... .
T Consensus 115 ~~~~~~~-~~~g~w~~~~~~~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~~~-----~ 181 (311)
T PRK08410 115 INYYDRY-VKSGEYSESPIFTHISRPLGEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSGKN-----K 181 (311)
T ss_pred HHHHHHH-HHcCCCCcCCCccccCccccccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCccc-----c
Confidence 5556666 8999996321 2368999 9999999999999999999999 9998665543211 1
Q ss_pred HCCceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCC
Q 021401 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKN 229 (313)
Q Consensus 159 ~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~ 229 (313)
..++. ..+++|++++||+|++|+|.+..++ +++ +.+..||||++++.++ |-. +..+++ +.+. ..
T Consensus 182 ~~~~~-----~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~-g~i~-Aa 254 (311)
T PRK08410 182 NEEYE-----RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDE-KDIY-AG 254 (311)
T ss_pred ccCce-----eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCeE-EE
Confidence 23443 3489999999999999999998876 886 8999999999999654 532 233332 3333 45
Q ss_pred ccEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHHHH
Q 021401 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (313)
Q Consensus 230 i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~a 277 (313)
++|...+|..+.+. ++..- .=-|.++|||- ..+.++.+.+
T Consensus 255 LDV~~~EP~~~~~p---L~~~~-----~~~NvilTPH~a~~t~e~~~~~ 295 (311)
T PRK08410 255 LDVLEKEPMEKNHP---LLSIK-----NKEKLLITPHIAWASKEARKTL 295 (311)
T ss_pred EecCCCCCCCCCCh---hhccC-----CCCCEEECCccccCCHHHHHHH
Confidence 77777888554443 22210 00379999985 3455555544
No 33
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.57 E-value=1.7e-14 Score=138.57 Aligned_cols=168 Identities=18% Similarity=0.149 Sum_probs=116.0
Q ss_pred ccccchhhhhhcCCCccc-------ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH
Q 021401 85 SLANRDEFIVRGGRDLFK-------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA 157 (313)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~-------~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A 157 (313)
++..+++. +++|+|... .+..+|.| +++||||+|.||+.+|+.++.+ |++|++..+.... .
T Consensus 116 ~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~----~ 183 (314)
T PRK06932 116 SLMGWYRD-QLSDRWATCKQFCYFDYPITDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS----V 183 (314)
T ss_pred ChHHHHHH-HHcCCCCcCccccccCCcccccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc----c
Confidence 35566777 889999531 13468999 9999999999999999999999 9998655432211 0
Q ss_pred HHCCceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCC
Q 021401 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPK 228 (313)
Q Consensus 158 ~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~ 228 (313)
...+ ..+++|++++||+|++|+|.+..++ +++ +.++.||||++++.++ |-. +..+++ +.....
T Consensus 184 ~~~~-------~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~-g~i~gA 255 (314)
T PRK06932 184 CREG-------YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALEN-GKIAGA 255 (314)
T ss_pred cccc-------cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc-CCccEE
Confidence 0111 2389999999999999999999876 886 8999999999999654 532 233332 333334
Q ss_pred CccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC-CCHHHHHHHHH
Q 021401 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVALG 279 (313)
Q Consensus 229 ~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a~~ 279 (313)
..+|+..+|..+.....+.+.+ =-|.++|||-- .+.++.+.+..
T Consensus 256 aLDV~~~EP~~~~~pl~~~~~~-------~pnvilTPHia~~t~e~~~~~~~ 300 (314)
T PRK06932 256 ALDVLVKEPPEKDNPLIQAAKR-------LPNLLITPHIAWASDSAVTTLVN 300 (314)
T ss_pred EEecCCCCCCCCCChhhHhhcC-------CCCEEECCccccCcHHHHHHHHH
Confidence 6788888886555443221111 14889999853 44555555443
No 34
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=99.56 E-value=2.4e-14 Score=138.08 Aligned_cols=164 Identities=17% Similarity=0.210 Sum_probs=115.2
Q ss_pred ccccchhhhhhcCCCccc----ccccccCCCCEEEEEcccchHHHHHHHHH-hchhhhcCCcEEEEEecCCcccHHHHHH
Q 021401 85 SLANRDEFIVRGGRDLFK----LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (313)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~----~~~~~l~GikkIgIIG~G~mG~AlA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~~~A~~ 159 (313)
++..+++. +++|+|... +...+|.| +++||||+|.||+.+|+.++ .+ |++|++..+.... +...+
T Consensus 117 ~i~~~~~~-~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~~--~~~~~ 186 (323)
T PRK15409 117 RVVEVAER-VKAGEWTASIGPDWFGTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHHK--EAEER 186 (323)
T ss_pred CHHHHHHH-HHcCCCcccCccccccCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCch--hhHHh
Confidence 35566777 899999632 12468999 99999999999999999998 88 9998755543221 22234
Q ss_pred CCceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCc
Q 021401 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNI 230 (313)
Q Consensus 160 ~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i 230 (313)
.|.. ..+++|++++||+|++|+|.+..++ +++ +.++.||||++++.++ |-. +..++. +.......
T Consensus 187 ~~~~-----~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAaL 260 (323)
T PRK15409 187 FNAR-----YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQK-GEIHAAGL 260 (323)
T ss_pred cCcE-----ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEe
Confidence 4554 3489999999999999999999876 776 8999999999999664 532 233332 22323457
Q ss_pred cEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHH
Q 021401 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (313)
Q Consensus 231 ~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e 275 (313)
+|...+|..+.+. ++. --|.++|||- -.+.++.+
T Consensus 261 DVf~~EP~~~~~p---L~~--------~~nvilTPHia~~t~e~~~ 295 (323)
T PRK15409 261 DVFEQEPLSVDSP---LLS--------LPNVVAVPHIGSATHETRY 295 (323)
T ss_pred ecCCCCCCCCCch---hhc--------CCCEEEcCcCCCCcHHHHH
Confidence 7788888543332 333 2589999985 33444443
No 35
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.56 E-value=5e-15 Score=130.72 Aligned_cols=156 Identities=23% Similarity=0.241 Sum_probs=107.5
Q ss_pred cccchhhhhhcCCC--cccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021401 86 LANRDEFIVRGGRD--LFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (313)
Q Consensus 86 ~~~~~e~~v~~G~w--~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (313)
+..+++. +++|+| .......+|.| ++|||||+|.||+.+|+.++.+ |++|++..+... ........++.
T Consensus 11 ~~~~~~~-~~~~~W~~~~~~~~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~-~~~~~~~~~~~ 81 (178)
T PF02826_consen 11 LPEYHEA-QRNGEWASRERFPGRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPK-PEEGADEFGVE 81 (178)
T ss_dssp HHHHHHH-HHTTBHHHHTTTTBS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCH-HHHHHHHTTEE
T ss_pred HHHHHHH-HHcCCCCCCcCCCccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCC-hhhhcccccce
Confidence 5556777 899999 22345689999 9999999999999999999999 999876666543 22234556664
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEE
Q 021401 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIA 234 (313)
Q Consensus 164 ~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~ 234 (313)
..+++|++++||+|++++|.+..++ +++ +.+..||+|++++.++ |-. +..+++ +.......+|..
T Consensus 82 -----~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~-g~i~ga~lDV~~ 155 (178)
T PF02826_consen 82 -----YVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALES-GKIAGAALDVFE 155 (178)
T ss_dssp -----ESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT-TSEEEEEESS-S
T ss_pred -----eeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhh-ccCceEEEECCC
Confidence 4599999999999999999998875 776 8999999999999765 432 223332 222122456666
Q ss_pred eccCCCchhHHHHHHhcccccCCCceEEEEecc
Q 021401 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (313)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (313)
.+|..+.. .++. --|.++|||-
T Consensus 156 ~EP~~~~~---~l~~--------~~nvi~TPH~ 177 (178)
T PF02826_consen 156 PEPLPADS---PLWD--------LPNVILTPHI 177 (178)
T ss_dssp SSSSSTTH---HHHT--------STTEEEESS-
T ss_pred CCCCCCCC---hHHc--------CCCEEEeCcc
Confidence 77744332 3443 2578899983
No 36
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.56 E-value=2e-14 Score=137.70 Aligned_cols=157 Identities=13% Similarity=0.111 Sum_probs=109.8
Q ss_pred cccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021401 86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (313)
Q Consensus 86 ~~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (313)
+..+++. +++|+|... ...+|.| ++|||||+|+||.++|+.++.+ |++|+++++...+ .|+..
T Consensus 100 i~~~~~~-~~~g~w~~~-~~~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~- 162 (303)
T PRK06436 100 ICENNYN-MKNGNFKQS-PTKLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS- 162 (303)
T ss_pred hHHHHHH-HHcCCCCCC-CCCCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc-
Confidence 4445656 899999753 3479999 9999999999999999999999 9998766654211 23321
Q ss_pred CCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEEEec
Q 021401 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIAVC 236 (313)
Q Consensus 166 ~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~l------~~~~~~~~~l~~~i~vV~vh 236 (313)
...++++++++||+|++++|.+..++ +++ +.++.||||+++++++ |-.+ ..+++ +.......+|...+
T Consensus 163 --~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~-g~i~~a~lDV~~~E 239 (303)
T PRK06436 163 --IYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRN-HNDKYYLSDVWWNE 239 (303)
T ss_pred --ccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCceEEEEccCCCC
Confidence 13489999999999999999999876 776 7899999999999765 4321 22222 11212235677777
Q ss_pred cCCCchhHHHHHHhcccccCCCceEEEEec-c-CCCHHHHHH
Q 021401 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVH-Q-DVDGRATNV 276 (313)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~-~-d~~~ea~e~ 276 (313)
|..+... --|+++||| . ..+.+..+.
T Consensus 240 P~~~~~~--------------~~nviiTPHi~g~~t~e~~~~ 267 (303)
T PRK06436 240 PIITETN--------------PDNVILSPHVAGGMSGEIMQP 267 (303)
T ss_pred CCCccCC--------------CCCEEECCccccccCHHHHHH
Confidence 7533321 147999999 3 355654443
No 37
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.55 E-value=1e-13 Score=130.08 Aligned_cols=154 Identities=17% Similarity=0.154 Sum_probs=115.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHH-----------HHHHCCceec--------C-CCcC
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEE--------N-GTLG 170 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-----------~A~~~G~~~~--------~-~~~~ 170 (313)
|++|+|||.|.||.++|..+... |++|++.+++ ++..+ ...+.|..+. . ....
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~-~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~ 75 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDIS-DAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTT 75 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 47899999999999999999998 9987765543 33332 2334442110 0 0023
Q ss_pred CHHhhhccCCEEEEcccchhH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 021401 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (313)
Q Consensus 171 ~~~e~i~~ADvIiLavP~~a~--~~vi~ei~~~mk~gaiL-id~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (313)
+.+ .+++||+||+++|++.. .++++++.++++++++| ++++|+.+..+.. .++...++++.||+.|.+.+
T Consensus 76 ~~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~~~--- 148 (282)
T PRK05808 76 DLD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVPVM--- 148 (282)
T ss_pred CHH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCcccC---
Confidence 444 57999999999998776 46899999999999998 5889998877765 33444589999999998873
Q ss_pred HHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021401 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
.+. -+++...++++..+.++.+++.+|..-+
T Consensus 149 ---------~~v--ev~~g~~t~~e~~~~~~~l~~~lGk~pv 179 (282)
T PRK05808 149 ---------KLV--EIIRGLATSDATHEAVEALAKKIGKTPV 179 (282)
T ss_pred ---------ccE--EEeCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 133 2788899999999999999999996544
No 38
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.55 E-value=1.3e-13 Score=130.77 Aligned_cols=155 Identities=13% Similarity=0.164 Sum_probs=113.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-----CCceecC----------CCcCCHHhh
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET 175 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~~~----------~~~~~~~e~ 175 (313)
+++|+|||+|+||.++|..|... |++|++.++. ++..+.+.+ .|...+. ....+.+++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVM-EGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence 58999999999999999999998 9987766544 333333322 1210000 013467788
Q ss_pred hccCCEEEEcccchh--HHHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcc
Q 021401 176 ISGSDLVLLLISDAA--QADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (313)
Q Consensus 176 i~~ADvIiLavP~~a--~~~vi~ei~~~mk~gaiL-id~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~ 252 (313)
+++||+|++++|++. ..+++.++.+.++++++| ++++|+.+..+.+ .++...+|++.||+.|... +
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~~-------~- 145 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPADV-------I- 145 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCcc-------C-
Confidence 999999999999986 345888888888888877 4788887766654 3444568999999998765 2
Q ss_pred cccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021401 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 253 e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
.-..+++..+++++.++.+..+++.+|..-+
T Consensus 146 ------~l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v 176 (311)
T PRK06130 146 ------PLVEVVRGDKTSPQTVATTMALLRSIGKRPV 176 (311)
T ss_pred ------ceEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 1344678888899999999999999995433
No 39
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.54 E-value=5.4e-14 Score=136.04 Aligned_cols=156 Identities=24% Similarity=0.296 Sum_probs=110.6
Q ss_pred ccccchhhhhhcCCCccc--------ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH
Q 021401 85 SLANRDEFIVRGGRDLFK--------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE 156 (313)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~--------~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~ 156 (313)
++..+++. +++|+|... ....+|.| ++|||||+|+||+++|+.|+.+ |++|+++++.. +. ..
T Consensus 118 ~~~~~~~~-~~~g~W~~~~~~~~~~~~~g~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~-~~-~~ 187 (333)
T PRK13243 118 RLVEADHF-VRSGEWKRRGVAWHPLMFLGYDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTR-KP-EA 187 (333)
T ss_pred CHHHHHHH-HHcCCCCccccccccccccccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCC-Ch-hh
Confidence 35566767 899999632 12368999 9999999999999999999999 99986555442 22 22
Q ss_pred HHHCCceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCC
Q 021401 157 ARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFP 227 (313)
Q Consensus 157 A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~l------~~~~~~~~~l~ 227 (313)
..+.|+. ..+++|++++||+|++|+|.+..++ ++. +.++.||+|++|++++ |-.+ ..+++ +.+..
T Consensus 188 ~~~~~~~-----~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~-g~i~g 261 (333)
T PRK13243 188 EKELGAE-----YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKE-GWIAG 261 (333)
T ss_pred HHHcCCE-----ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHc-CCeEE
Confidence 3344544 3489999999999999999998765 775 8999999999999765 4321 22222 22223
Q ss_pred CCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC
Q 021401 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (313)
Q Consensus 228 ~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (313)
..++|...+|.. .+ .++.. -|.++|||--
T Consensus 262 AaLDV~~~EP~~-~~---pL~~~--------~nvilTPHia 290 (333)
T PRK13243 262 AGLDVFEEEPYY-NE---ELFSL--------KNVVLAPHIG 290 (333)
T ss_pred EEeccCCCCCCC-Cc---hhhcC--------CCEEECCcCC
Confidence 346788888853 22 23331 4889999863
No 40
>PRK07574 formate dehydrogenase; Provisional
Probab=99.53 E-value=1.5e-13 Score=135.70 Aligned_cols=167 Identities=17% Similarity=0.110 Sum_probs=117.2
Q ss_pred ccccchhhhhhcCCCccc---ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021401 85 SLANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (313)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~---~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (313)
++..+++. +++|+|... ....+|.| ++|||||+|.||..+|+.|+.+ |++|++.++... ..+...+.|
T Consensus 165 ~~~~~~~~-~~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~-~~~~~~~~g 235 (385)
T PRK07574 165 NYEPSHRQ-AVEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRL-PEEVEQELG 235 (385)
T ss_pred CHHHHHHH-HHhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC-chhhHhhcC
Confidence 45556666 889999642 23478999 9999999999999999999999 999876665432 222333456
Q ss_pred ceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccE
Q 021401 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGV 232 (313)
Q Consensus 162 ~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~l------~~~~~~~~~l~~~i~v 232 (313)
+.. ..+++|++++||+|++++|.+..++ +++ +.++.||+|++|++++ |-.+ ..+++ +.+.....+|
T Consensus 236 ~~~----~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s-G~i~GAaLDV 310 (385)
T PRK07574 236 LTY----HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES-GHLAGYAGDV 310 (385)
T ss_pred cee----cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh-CCccEEEEec
Confidence 542 3589999999999999999999876 776 7999999999999765 4322 23332 2232345677
Q ss_pred EEeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHHH
Q 021401 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (313)
Q Consensus 233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~ 276 (313)
...+|..+.+. ++.. -|.++|||- ..+.++.+.
T Consensus 311 ~~~EPlp~d~p---L~~~--------pNvilTPHiag~T~e~~~~ 344 (385)
T PRK07574 311 WFPQPAPADHP---WRTM--------PRNGMTPHISGTTLSAQAR 344 (385)
T ss_pred CCCCCCCCCCh---HHhC--------CCeEECCccccCcHHHHHH
Confidence 77888544433 2221 478899985 344555543
No 41
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.53 E-value=5.3e-14 Score=135.21 Aligned_cols=162 Identities=21% Similarity=0.167 Sum_probs=112.8
Q ss_pred cccchhhhhhcCCCccc-------ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH
Q 021401 86 LANRDEFIVRGGRDLFK-------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR 158 (313)
Q Consensus 86 ~~~~~e~~v~~G~w~f~-------~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~ 158 (313)
+..+++. +++|+|... +...+|.| +++||||+|.||+.+|+.++.+ |++|+++.+....
T Consensus 118 ~~~~~~~-~~~g~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~------ 183 (317)
T PRK06487 118 LPDYQQA-VAAGRWQQSSQFCLLDFPIVELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP------ 183 (317)
T ss_pred HHHHHHH-HHcCCCccCcccccccCcccccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc------
Confidence 4456666 899999532 12368999 9999999999999999999999 9998665543211
Q ss_pred HCCceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCC
Q 021401 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKN 229 (313)
Q Consensus 159 ~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~ 229 (313)
.... ..+++|++++||+|++|+|.+..++ +++ +.++.||+|++++.++ |-. +..+++ +......
T Consensus 184 -~~~~-----~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAa 256 (317)
T PRK06487 184 -ARPD-----RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRS-GHLGGAA 256 (317)
T ss_pred -cccc-----ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEE
Confidence 1111 2389999999999999999999876 886 8999999999999664 532 233332 3333346
Q ss_pred ccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC-CCHHHHHHH
Q 021401 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (313)
Q Consensus 230 i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a 277 (313)
++|+..+|..+.+. ++... =-|.++|||-- .+.+..+.+
T Consensus 257 LDVf~~EP~~~~~p---l~~~~------~pnvilTPHia~~t~e~~~~~ 296 (317)
T PRK06487 257 TDVLSVEPPVNGNP---LLAPD------IPRLIVTPHSAWGSREARQRI 296 (317)
T ss_pred eecCCCCCCCCCCc---hhhcC------CCCEEECCccccCCHHHHHHH
Confidence 78888888554433 22200 14789999853 344544443
No 42
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.52 E-value=3.2e-13 Score=127.42 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=112.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-----------HHHCCceec--------CCCcCC
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE--------NGTLGD 171 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~--------~~~~~~ 171 (313)
+++|+|||+|.||.++|+.+... |++|++.+++. ...+. ..+.|...+ .-...+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDP-AALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 58999999999999999999999 99887666543 22221 222221100 001223
Q ss_pred HHhhhccCCEEEEcccchhH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 021401 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (313)
Q Consensus 172 ~~e~i~~ADvIiLavP~~a~--~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf 248 (313)
..+.+++||+||+++|.... ..++.++.+.++++++|+ +++|+.+..+.+ .+....+++++||..|...
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~~----- 148 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPPI----- 148 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCccc-----
Confidence 34678999999999995554 457888989999999886 899998777665 3344468999999777654
Q ss_pred HhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021401 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 249 ~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
+ ....+++...++++.++.++.+++.+|...+
T Consensus 149 --~-------~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~ 180 (295)
T PLN02545 149 --M-------KLVEIIRGADTSDEVFDATKALAERFGKTVV 180 (295)
T ss_pred --C-------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 1 2345788888999999999999999996544
No 43
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.50 E-value=2e-13 Score=118.69 Aligned_cols=151 Identities=22% Similarity=0.237 Sum_probs=99.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a 190 (313)
|++|||||+|+||..+|++|.+. |++|.++++. .+..+...+.|... ..++.|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~-~~~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRS-PEKAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESS-HHHHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccc-hhhhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence 58999999999999999999999 9998776654 44556666778764 6799999999999999999977
Q ss_pred HH-HHHHH--HHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021401 191 QA-DNYEK--IFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (313)
Q Consensus 191 ~~-~vi~e--i~~~mk~gaiLid~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (313)
.. +++.+ +++.+++|++++|++.......++....+ ..++.||..-=.+ ++ ..-+.| .-. +...
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~G-g~---~~a~~g-------~l~-~~~g 137 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSG-GP---PGAEEG-------TLT-IMVG 137 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEES-HH---HHHHHT-------TEE-EEEE
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeec-cc---cccccc-------ceE-EEcc
Confidence 65 58887 99999999999999876432111101121 3456666521111 11 111223 323 3444
Q ss_pred cCCCHHHHHHHHHHHHHcCC
Q 021401 267 QDVDGRATNVALGWSVALGS 286 (313)
Q Consensus 267 ~d~~~ea~e~a~~L~~alG~ 286 (313)
.+ .++.+.++.+++.+|.
T Consensus 138 G~--~~~~~~~~~~l~~~~~ 155 (163)
T PF03446_consen 138 GD--EEAFERVRPLLEAMGK 155 (163)
T ss_dssp S---HHHHHHHHHHHHHHEE
T ss_pred CC--HHHHHHHHHHHHHHhC
Confidence 44 6899999999999995
No 44
>PLN03139 formate dehydrogenase; Provisional
Probab=99.50 E-value=3.4e-13 Score=133.10 Aligned_cols=166 Identities=14% Similarity=0.067 Sum_probs=116.2
Q ss_pred ccccchhhhhhcCCCccc---ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021401 85 SLANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (313)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~---~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (313)
++..+++. +++|+|... ....+|.| ++|||||+|.||..+|+.|+.+ |++|+++++.. ...+...+.|
T Consensus 172 ~~~~~~~~-~~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~-~~~~~~~~~g 242 (386)
T PLN03139 172 NFLPGYHQ-VVSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLK-MDPELEKETG 242 (386)
T ss_pred CcHHHHHH-HHhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCC-cchhhHhhcC
Confidence 45566767 889999632 23468999 9999999999999999999999 99986655432 2223334456
Q ss_pred ceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccE
Q 021401 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGV 232 (313)
Q Consensus 162 ~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~l------~~~~~~~~~l~~~i~v 232 (313)
+.. ..+++|++++||+|++++|.+..++ +++ +.++.||+|++|++++ |-.+ ..+++ +.+.....+|
T Consensus 243 ~~~----~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s-G~l~GAaLDV 317 (386)
T PLN03139 243 AKF----EEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSS-GHIGGYGGDV 317 (386)
T ss_pred cee----cCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHc-CCceEEEEcC
Confidence 542 3489999999999999999998876 776 8999999999999765 4322 23332 2232335677
Q ss_pred EEeccCCCchhHHHHHHhcccccCCCceEEEEeccC-CCHHHHH
Q 021401 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (313)
Q Consensus 233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e 275 (313)
..-+|..+.+. ++.. -|.++|||-- .+.++.+
T Consensus 318 ~~~EPlp~d~p---L~~~--------pNvilTPHiag~t~~~~~ 350 (386)
T PLN03139 318 WYPQPAPKDHP---WRYM--------PNHAMTPHISGTTIDAQL 350 (386)
T ss_pred CCCCCCCCCCh---hhcC--------CCeEEcccccccCHHHHH
Confidence 77888655443 2221 4788999863 3344444
No 45
>PLN02928 oxidoreductase family protein
Probab=99.50 E-value=1.9e-13 Score=132.98 Aligned_cols=170 Identities=21% Similarity=0.190 Sum_probs=113.2
Q ss_pred ccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH--H----C
Q 021401 87 ANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--A----A 160 (313)
Q Consensus 87 ~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~--~----~ 160 (313)
..+++. +++|+|... ...+|.| +++||||+|.||..+|+.|+.+ |++|++..+.......... . .
T Consensus 138 ~~~~~~-~~~~~w~~~-~~~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~~~~~~~~~~~~~ 208 (347)
T PLN02928 138 NEMQIS-LKARRLGEP-IGDTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEPEDGLLIPNGDVD 208 (347)
T ss_pred HHHHHH-HHcCCcccc-cccCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhhhhhhcccccccc
Confidence 345555 888999643 2368999 9999999999999999999999 9998766554221111000 0 0
Q ss_pred CceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCcc
Q 021401 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIG 231 (313)
Q Consensus 161 G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~ 231 (313)
.+.++.....+++|++++||+|++++|.+..++ +++ +.+..||+|++|++++ |-. +..+++ +......++
T Consensus 209 ~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~-g~i~gAaLD 287 (347)
T PLN02928 209 DLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALES-GHLGGLAID 287 (347)
T ss_pred ccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEEc
Confidence 000000124589999999999999999998876 776 8999999999999764 532 233332 223234578
Q ss_pred EEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC-CCHHHHHHH
Q 021401 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (313)
Q Consensus 232 vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a 277 (313)
|+..+|..+.+. ++. --|.++|||-- .+.+..+.+
T Consensus 288 V~~~EP~~~~~p---L~~--------~~nviiTPHia~~t~~~~~~~ 323 (347)
T PLN02928 288 VAWSEPFDPDDP---ILK--------HPNVIITPHVAGVTEYSYRSM 323 (347)
T ss_pred cCCCCCCCCCCh---hhc--------CCCEEECCcCCCChHHHHHHH
Confidence 888888554433 333 25899999863 344444443
No 46
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.47 E-value=4.2e-13 Score=128.95 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=107.2
Q ss_pred cccchhhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021401 86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (313)
Q Consensus 86 ~~~~~e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (313)
+..|.+. .++|+|... +..++.| ++|||||+|.||+.+|+.|+.+ |++|++..+.... . .++..
T Consensus 114 ~~~~~~~-~~~~~w~~~-~~~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~- 177 (312)
T PRK15469 114 FDDYQAL-QNSSHWQPL-PEYHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS- 177 (312)
T ss_pred hHHHHHH-HHhCCcCCC-CCCCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-
Confidence 4455555 788999743 3468999 9999999999999999999999 9998766543221 1 12211
Q ss_pred CCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEec
Q 021401 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAVC 236 (313)
Q Consensus 166 ~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~vh 236 (313)
..+..++++++++||+|++++|.+..++ +++ +.+..||+|++|++++ |-. +..+++ +.......+|...+
T Consensus 178 ~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~-g~i~gaalDVf~~E 256 (312)
T PRK15469 178 FAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDS-GKVKGAMLDVFSRE 256 (312)
T ss_pred ecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhc-CCeeeEEecCCCCC
Confidence 0113478999999999999999999876 776 7999999999999765 532 233332 22222346777777
Q ss_pred cCCCchhHHHHHHhcccccCCCceEEEEeccC
Q 021401 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (313)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (313)
|..+.+. ++. =.|+++|||--
T Consensus 257 Pl~~~~p---l~~--------~~nvi~TPHia 277 (312)
T PRK15469 257 PLPPESP---LWQ--------HPRVAITPHVA 277 (312)
T ss_pred CCCCCCh---hhc--------CCCeEECCcCC
Confidence 7533322 332 15889999863
No 47
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.47 E-value=2.9e-13 Score=134.45 Aligned_cols=156 Identities=20% Similarity=0.218 Sum_probs=108.3
Q ss_pred cccchhhhhhcCCCccc-ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021401 86 LANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (313)
Q Consensus 86 ~~~~~e~~v~~G~w~f~-~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (313)
+..+++. +++|+|... ....+|.| +++||||+|.||..+|+.++.+ |++|+++++. .. ....++..
T Consensus 127 ~~~~~~~-~~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~-~~----~~~~~~~~ 193 (409)
T PRK11790 127 IPEKNAK-AHRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIE-DK----LPLGNARQ 193 (409)
T ss_pred hHHHHHH-HHcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCC-cc----cccCCcee
Confidence 4456666 899999643 23478999 9999999999999999999999 9998655543 11 11122321
Q ss_pred cCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEe
Q 021401 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAV 235 (313)
Q Consensus 165 ~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~v 235 (313)
..+++|++++||+|++|+|.+..++ +++ +.+..||+|++|+.++ |-. +..+++ +.......+|...
T Consensus 194 ----~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-g~i~gaalDVf~~ 268 (409)
T PRK11790 194 ----VGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKS-GHLAGAAIDVFPV 268 (409)
T ss_pred ----cCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHc-CCceEEEEcCCCC
Confidence 3489999999999999999998776 776 8999999999999765 532 233332 2222335677777
Q ss_pred ccCCCchhHH-HHHHhcccccCCCceEEEEecc
Q 021401 236 CPKGMGPSVR-RLYVQGKEINGAGINSSFAVHQ 267 (313)
Q Consensus 236 hPn~pg~~~r-~lf~~G~e~~g~G~~~iitp~~ 267 (313)
+|..+..... .++.. -|.+++||-
T Consensus 269 EP~~~~~~~~~pL~~~--------~nvilTPHi 293 (409)
T PRK11790 269 EPKSNGDPFESPLRGL--------DNVILTPHI 293 (409)
T ss_pred CCCCccccccchhhcC--------CCEEECCcC
Confidence 7754321111 13332 479999986
No 48
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.46 E-value=6.1e-13 Score=135.84 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=110.9
Q ss_pred cccchhhhhhcCCCccc-ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021401 86 LANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (313)
Q Consensus 86 ~~~~~e~~v~~G~w~f~-~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (313)
+..+++. +|+|+|... +...+|.| ++|||||+|.||+++|+.|+.+ |++|+++++.. ..+.+.+.|+..
T Consensus 114 ~~~~~~~-~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~ 183 (525)
T TIGR01327 114 IPQADAS-LKEGEWDRKAFMGTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYI--SPERAEQLGVEL 183 (525)
T ss_pred HHHHHHH-HHcCCccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE
Confidence 4456666 899999643 23468999 9999999999999999999999 99976555432 233445566642
Q ss_pred cCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEe
Q 021401 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAV 235 (313)
Q Consensus 165 ~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~v 235 (313)
..+++|++++||+|++|+|.+..++ +++ +.++.||+|++|++++ |-. +..+++ +......++|+..
T Consensus 184 ----~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-g~i~gAaLDVf~~ 258 (525)
T TIGR01327 184 ----VDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEE-GHVRAAALDVFEK 258 (525)
T ss_pred ----cCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHc-CCeeEEEEecCCC
Confidence 3479999999999999999998766 775 7899999999999765 432 223332 2222335677777
Q ss_pred ccCCCchhHHHHHHhcccccCCCceEEEEeccC
Q 021401 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (313)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (313)
+|. +.+ .|+.. -|.++|||--
T Consensus 259 EP~-~~~---pL~~~--------~nvi~TPHia 279 (525)
T TIGR01327 259 EPP-TDN---PLFDL--------DNVIATPHLG 279 (525)
T ss_pred CCC-CCC---hhhcC--------CCeEECCCcc
Confidence 882 222 23431 4788999863
No 49
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.45 E-value=3.2e-12 Score=120.43 Aligned_cols=154 Identities=17% Similarity=0.178 Sum_probs=110.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC------------CceecC---------CCc
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA------------GFTEEN---------GTL 169 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~------------G~~~~~---------~~~ 169 (313)
|++|+|||.|.||.++|..+... |++|++.++.. +..+.+.+. ....++ ...
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 75 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISD-EALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT 75 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe
Confidence 48999999999999999999988 99887666543 322222211 111000 013
Q ss_pred CCHHhhhccCCEEEEcccchh--HHHHHHHHHhcCCCCcEEEE-ecCchhhhhhhcccCCCCCccEEEeccCCCchhHHH
Q 021401 170 GDIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR 246 (313)
Q Consensus 170 ~~~~e~i~~ADvIiLavP~~a--~~~vi~ei~~~mk~gaiLid-~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~ 246 (313)
.+.++++++||+||.++|.+. ..++++++.+.++++++|++ .++..+..+.+ ..+...+|++.||-.|...
T Consensus 76 ~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p~~~--- 149 (287)
T PRK08293 76 TDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANEIWK--- 149 (287)
T ss_pred CCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCCCCc---
Confidence 577888999999999999764 34588899999999999864 44554544543 2333457999999666543
Q ss_pred HHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCc
Q 021401 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (313)
Q Consensus 247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~ 288 (313)
...+.+++...++++.++.+.++++.+|..-
T Consensus 150 -----------~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~p 180 (287)
T PRK08293 150 -----------NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVP 180 (287)
T ss_pred -----------CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 2456688889999999999999999999543
No 50
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.44 E-value=1.3e-12 Score=126.40 Aligned_cols=156 Identities=13% Similarity=0.156 Sum_probs=105.9
Q ss_pred cccchhhhhhcCCCccc--ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021401 86 LANRDEFIVRGGRDLFK--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (313)
Q Consensus 86 ~~~~~e~~v~~G~w~f~--~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (313)
+..+++. +++|+|.+. ....+|.| ++|||||+|.||+++|+.|+.+ |++|++.++.. .... ++.
T Consensus 121 ~~~~~~~-~~~~~~~w~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~-~~~~-----~~~ 186 (330)
T PRK12480 121 FPDIERR-VQAHDFTWQAEIMSKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYP-NKDL-----DFL 186 (330)
T ss_pred HHHHHHH-HHhCCcccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCh-hHhh-----hhh
Confidence 4455666 788876432 23478999 9999999999999999999999 99987665442 2111 111
Q ss_pred ecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEEE
Q 021401 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIA 234 (313)
Q Consensus 164 ~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~l------~~~~~~~~~l~~~i~vV~ 234 (313)
. ...++++++++||+|++|+|.+..+. ++. +++++||+|++|++++ |-.+ ..+++ +......++|+.
T Consensus 187 ~---~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~-g~i~gaalDV~~ 262 (330)
T PRK12480 187 T---YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVND-GTLLGAAIDTYE 262 (330)
T ss_pred h---ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHc-CCeeEEEEeccC
Confidence 1 13478999999999999999998754 665 8899999999999664 5422 23332 222233567777
Q ss_pred eccCC----------CchhHHHHHHhcccccCCCceEEEEecc
Q 021401 235 VCPKG----------MGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (313)
Q Consensus 235 vhPn~----------pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (313)
-+|.. ..+....++.. -|.++|||-
T Consensus 263 ~EP~~~~~~~~~~~~~~~~~~~L~~~--------~nvilTPHi 297 (330)
T PRK12480 263 NEAAYFTNDWTNKDIDDKTLLELIEH--------ERILVTPHI 297 (330)
T ss_pred CCCccccccccccccCchhhHHHhcC--------CCEEECCcc
Confidence 78731 11212234442 489999986
No 51
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.43 E-value=7.8e-13 Score=135.11 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=111.0
Q ss_pred cccchhhhhhcCCCccc-ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021401 86 LANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (313)
Q Consensus 86 ~~~~~e~~v~~G~w~f~-~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (313)
+..+++. +++|+|... +.-.+|.| ++|||||+|.||+.+|+.|+.+ |++|+++++.. ..+.+...|+.
T Consensus 116 ~~~~~~~-~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~- 184 (526)
T PRK13581 116 IPQAHAS-LKAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYI--SPERAAQLGVE- 184 (526)
T ss_pred HHHHHHH-HHcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCE-
Confidence 4456666 899999643 23368999 9999999999999999999999 99976655432 22344556765
Q ss_pred cCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEe
Q 021401 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAV 235 (313)
Q Consensus 165 ~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~v 235 (313)
..+++|++++||+|++|+|.+..++ +++ +.++.||+|+++++++ |-. +..+++ +......++|+..
T Consensus 185 ----~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-g~i~gAaLDVf~~ 259 (526)
T PRK13581 185 ----LVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKS-GKVAGAALDVFEK 259 (526)
T ss_pred ----EEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhc-CCeeEEEEecCCC
Confidence 2389999999999999999998766 775 8999999999999765 432 223322 2232345677777
Q ss_pred ccCCCchhHHHHHHhcccccCCCceEEEEeccC
Q 021401 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (313)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (313)
+|. +.+ .|+.. -|.++|||--
T Consensus 260 EP~-~~~---pL~~~--------~nvilTPHia 280 (526)
T PRK13581 260 EPP-TDS---PLFEL--------PNVVVTPHLG 280 (526)
T ss_pred CCC-CCc---hhhcC--------CCeeEcCccc
Confidence 883 222 23432 4788999863
No 52
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=99.43 E-value=2e-12 Score=125.32 Aligned_cols=167 Identities=20% Similarity=0.200 Sum_probs=120.5
Q ss_pred ccccchhhhhhcCCCcc-cc--cccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC
Q 021401 85 SLANRDEFIVRGGRDLF-KL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (313)
Q Consensus 85 ~~~~~~e~~v~~G~w~f-~~--~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (313)
++...+|. +++|+|.. +. ...++.| |+|||+|+|.||..+|+.|+.+ |+.+.+..|. +...+.+.+.+
T Consensus 135 ~~~~g~~~-~~~g~w~~~~~~~~g~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i~y~~r~-~~~~~~~~~~~ 205 (336)
T KOG0069|consen 135 RFSEGNEM-VRNGGWGWAGGWPLGYDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVILYHSRT-QLPPEEAYEYY 205 (336)
T ss_pred hhhhhhhh-hhcCCccccCCccccccccC-CEEEEecCcHHHHHHHHhhhhc------cceeeeeccc-CCchhhHHHhc
Confidence 68888888 99999933 21 3589999 9999999999999999999999 9655444443 34445555555
Q ss_pred ceecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEe-cCchh------hhhhhcccCCCCCccE
Q 021401 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGV 232 (313)
Q Consensus 162 ~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~-~Gv~l------~~~~~~~~~l~~~i~v 232 (313)
.. ..+++|.+.+||+|++|||++..+. +++ +.+.+||+|.+|+.+ -|-.+ ..+ ..+...+.+.+|
T Consensus 206 ~~-----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL-~sG~i~~aGlDV 279 (336)
T KOG0069|consen 206 AE-----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL-KSGKIAGAGLDV 279 (336)
T ss_pred cc-----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH-hcCCcccccccc
Confidence 44 3489999999999999999999886 887 899999999999955 45422 222 234455668889
Q ss_pred EEeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHHHHH
Q 021401 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVAL 278 (313)
Q Consensus 233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~a~ 278 (313)
.--+| .+-+. ++. =-|.+++||= .++.+..+...
T Consensus 280 f~~EP-~~~~~---l~~--------~dnvv~~PHigs~t~~t~~~m~ 314 (336)
T KOG0069|consen 280 FEPEP-PVDHP---LLT--------LDNVVILPHIGSATLETREKMA 314 (336)
T ss_pred cCCCC-CCCcc---hhc--------ccceeEecccccCcHHHHHHHH
Confidence 88888 43333 222 1357789975 44444444443
No 53
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.43 E-value=2.2e-12 Score=122.76 Aligned_cols=148 Identities=22% Similarity=0.225 Sum_probs=106.9
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~ 191 (313)
++|+|||+|+||..+|++|.+. |+++.+++|..++..+.+.+.|... ..+..|+++++|+||+++|+.++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence 5899999999999999999999 9999888888776677777778874 56788999999999999999998
Q ss_pred HH-HH---HHHHhcCCCCcEEEEecCchhhhhhhcc-cCCCCCccEEEecc---CCCchhHHHHHHhcccccCCCceEEE
Q 021401 192 AD-NY---EKIFSCMKPNSILGLSHGFLLGHLQSIG-LDFPKNIGVIAVCP---KGMGPSVRRLYVQGKEINGAGINSSF 263 (313)
Q Consensus 192 ~~-vi---~ei~~~mk~gaiLid~~Gv~l~~~~~~~-~~l~~~i~vV~vhP---n~pg~~~r~lf~~G~e~~g~G~~~ii 263 (313)
.+ ++ +.+.+.+|||++++|++.+.....++.. ..-..+..|+- .| -.++.. +| .-.|
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lD-APVsGg~~~A~------~G--------tLti 135 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLD-APVSGGVPGAA------AG--------TLTI 135 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEe-cCccCCchhhh------hC--------ceEE
Confidence 76 66 3689999999999999877421111000 01122444443 12 011111 22 2334
Q ss_pred EeccCCCHHHHHHHHHHHHHcCC
Q 021401 264 AVHQDVDGRATNVALGWSVALGS 286 (313)
Q Consensus 264 tp~~d~~~ea~e~a~~L~~alG~ 286 (313)
.+..+ +++.+.++-+++.+|.
T Consensus 136 mvGG~--~~~f~r~~pvl~~~g~ 156 (286)
T COG2084 136 MVGGD--AEAFERAKPVLEAMGK 156 (286)
T ss_pred EeCCC--HHHHHHHHHHHHHhcC
Confidence 45544 6899999999999995
No 54
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.42 E-value=6.1e-13 Score=104.87 Aligned_cols=89 Identities=24% Similarity=0.278 Sum_probs=70.8
Q ss_pred EEEEEcccchHHHHHHHHHhchhhhcCC---cEEEEE-ecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccc
Q 021401 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (313)
Q Consensus 113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G---~~Vivg-~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~ 188 (313)
||||||.|+||.+++++|.+. | .+|.+. .++.++..+.+.+.+... ...+..|+++++|+|+|++||
T Consensus 1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~advvilav~p 71 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQA---TADDNEEAAQEADVVILAVKP 71 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEE---ESEEHHHHHHHTSEEEE-S-G
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhcccc---ccCChHHhhccCCEEEEEECH
Confidence 799999999999999999999 8 788766 555444455667777543 122789999999999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEe
Q 021401 189 AAQADNYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 189 ~a~~~vi~ei~~~mk~gaiLid~ 211 (313)
+...+++.++ +...++++|+++
T Consensus 72 ~~~~~v~~~i-~~~~~~~~vis~ 93 (96)
T PF03807_consen 72 QQLPEVLSEI-PHLLKGKLVISI 93 (96)
T ss_dssp GGHHHHHHHH-HHHHTTSEEEEE
T ss_pred HHHHHHHHHH-hhccCCCEEEEe
Confidence 9999999999 777889988854
No 55
>PRK06444 prephenate dehydrogenase; Provisional
Probab=99.42 E-value=1.9e-12 Score=117.12 Aligned_cols=123 Identities=15% Similarity=0.054 Sum_probs=96.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021401 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (313)
Q Consensus 112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a 190 (313)
++|+|||- |.||..++..+++. |+.|. +++||+|+||+|+..
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence 58999997 99999999999999 98763 248999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh--HHHHHHhcccccCCCceEEEEeccC
Q 021401 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS--VRRLYVQGKEINGAGINSSFAVHQD 268 (313)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~--~r~lf~~G~e~~g~G~~~iitp~~d 268 (313)
..++++++. .+|+|++|++....+. ..+||+.|| +.|+. ..++| .+++++ .++
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~~~-------~~~~vg~HP-MfGp~~a~~~lf----------~~~iv~-~~~ 98 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFKKY-------SGKIVSIHP-LFGPMSYNDGVH----------RTVIFI-NDI 98 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHHHh-------cCCEEecCC-CCCCCcCccccc----------ceEEEE-CCC
Confidence 999998764 3788999998633321 347999999 44533 22233 256665 556
Q ss_pred CCHHHHHHHHHHHHHcCCCceeecChhHHHh
Q 021401 269 VDGRATNVALGWSVALGSPFTFATTLEQEYK 299 (313)
Q Consensus 269 ~~~ea~e~a~~L~~alG~~~~~~tT~~~e~~ 299 (313)
.++++++.+++||+ | .+++++|+++|=+
T Consensus 99 ~~~~~~~~~~~l~~--G-~~~~~~t~eeHD~ 126 (197)
T PRK06444 99 SRDNYLNEINEMFR--G-YHFVEMTADEHDL 126 (197)
T ss_pred CCHHHHHHHHHHHc--C-CEEEEeCHHHHHH
Confidence 77888999999998 6 6999999999943
No 56
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.42 E-value=3.9e-12 Score=128.95 Aligned_cols=151 Identities=17% Similarity=0.124 Sum_probs=112.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH-------------------HCC-ceecCCCcC
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLG 170 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-------------------~~G-~~~~~~~~~ 170 (313)
|++|||||+|+||.++|.++... |++|++.++..+. .+... ..| +. ...
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~----~~~ 72 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEA-ERIIGEVLANAERAYAMLTDAPLPPEGRLT----FCA 72 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHhhhccchhhhhhceE----eeC
Confidence 48999999999999999999999 9998877765332 21110 012 22 145
Q ss_pred CHHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 021401 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (313)
Q Consensus 171 ~~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (313)
++.+++++||+|+.++|++... .++.++.+.++++++|. .++|+.+..+.+ .+...-.++..||+.|...
T Consensus 73 ~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~~---- 145 (495)
T PRK07531 73 SLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVYL---- 145 (495)
T ss_pred CHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCccc----
Confidence 7888999999999999999743 37778888888887664 566776666654 3344457999999888764
Q ss_pred HHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021401 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
+.-..+++.+.++++.++.++.+++.+|..-+
T Consensus 146 ----------~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v 177 (495)
T PRK07531 146 ----------LPLVELVGGGKTSPETIRRAKEILREIGMKPV 177 (495)
T ss_pred ----------CceEEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 22345778888899999999999999996543
No 57
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.42 E-value=6.7e-12 Score=118.19 Aligned_cols=154 Identities=15% Similarity=0.078 Sum_probs=111.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-----------CCceecC---------CCcC
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG 170 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~---------~~~~ 170 (313)
|++|+|||+|.||.++|..|.+. |++|++.++. ++..+.+.+ .|...+. ....
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 73 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIK-QEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSL 73 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 58999999999999999999999 9988766654 333333221 1111000 0134
Q ss_pred CHHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 021401 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (313)
Q Consensus 171 ~~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiL-id~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (313)
+.++++++||+||+++|.+... .++.++.+.++++++| ++++.+.+..+.+ ......++++.|+-.|...
T Consensus 74 ~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~~Pv~~---- 146 (288)
T PRK09260 74 DLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFFNPVHK---- 146 (288)
T ss_pred cHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc----
Confidence 6778999999999999988754 3778888899999987 4777777666554 3333357899999755433
Q ss_pred HHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCc
Q 021401 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (313)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~ 288 (313)
+.-..+++...++++.++.++.+++.+|..-
T Consensus 147 ----------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~ 177 (288)
T PRK09260 147 ----------MKLVELIRGLETSDETVQVAKEVAEQMGKET 177 (288)
T ss_pred ----------CceEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 2355678888889999999999999999543
No 58
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=99.40 E-value=1.6e-12 Score=125.27 Aligned_cols=175 Identities=21% Similarity=0.162 Sum_probs=128.1
Q ss_pred ccchhhhhhcCCCccc-ccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec
Q 021401 87 ANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (313)
Q Consensus 87 ~~~~e~~v~~G~w~f~-~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (313)
...... ++.|+|... +.-.+|.| ||+||||+|.||.-+|+.++.. |++++.+++..+ .+++...|+.
T Consensus 123 ~~A~~s-~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi~~--~~~~~a~gvq-- 190 (406)
T KOG0068|consen 123 GQASAS-MKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPITP--MALAEAFGVQ-- 190 (406)
T ss_pred chhhee-eecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCCCc--hHHHHhccce--
Confidence 333434 899999664 45689999 9999999999999999999999 999876665543 4577778887
Q ss_pred CCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-C-c-----hhhhhhhcccCCCCCccEEEec
Q 021401 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-G-F-----LLGHLQSIGLDFPKNIGVIAVC 236 (313)
Q Consensus 166 ~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-G-v-----~l~~~~~~~~~l~~~i~vV~vh 236 (313)
..+++|+++.||+|.||||..+.++ +++ +.+..||+|.-|+.++ | + .+..+++ +..-..-++|+..+
T Consensus 191 ---~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s-G~vaGaAlDVy~~E 266 (406)
T KOG0068|consen 191 ---LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS-GQVAGAALDVYPEE 266 (406)
T ss_pred ---eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc-CcccceeeecccCC
Confidence 5699999999999999999999876 776 8899999999998653 4 3 1233333 33434568888889
Q ss_pred cCCCchhHHHHHHhcccccCCCceEEEEeccCCC-HH-----HHHHHHHHHHHcCC
Q 021401 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD-GR-----ATNVALGWSVALGS 286 (313)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~-~e-----a~e~a~~L~~alG~ 286 (313)
|..-+- .++|-. =-|.+.|||.-.+ .| +.|.++++...+..
T Consensus 267 pp~~~~-~~~Lv~--------hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~ 313 (406)
T KOG0068|consen 267 PPKNGW-DSELVS--------HPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING 313 (406)
T ss_pred CCccch-hHHHhc--------CCceeecCccccchHHHHHHHHHHHHHHHHHHhcc
Confidence 855431 233332 1478899998544 33 34556666666654
No 59
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.39 E-value=1.2e-11 Score=116.60 Aligned_cols=154 Identities=17% Similarity=0.226 Sum_probs=111.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH--------------HCCceecC---------C
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------------AAGFTEEN---------G 167 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~--------------~~G~~~~~---------~ 167 (313)
|++|+|||.|.||.++|..+... |++|++.+++ ++..+.+. +.|...+. .
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~-~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVS-EEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCC-HHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence 48999999999999999999999 9987766554 33333221 11211000 0
Q ss_pred CcCCHHhhhccCCEEEEcccchhH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhH
Q 021401 168 TLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (313)
Q Consensus 168 ~~~~~~e~i~~ADvIiLavP~~a~--~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~ 244 (313)
...+. +.+++||+||+++|++.. .++++++.+.++++++|+ .++|..+..+.. .+....+|++.||..|.+.+
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPVM 151 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCcccC
Confidence 12234 578999999999999874 458888988999999876 567777666654 33445689999999988773
Q ss_pred HHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021401 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 245 r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
+ +.. +.+.+.++++.++.+..+++.+|..-+
T Consensus 152 ------~------~vE--v~~g~~T~~e~~~~~~~~~~~lgk~~v 182 (291)
T PRK06035 152 ------K------LIE--VVRAALTSEETFNTTVELSKKIGKIPI 182 (291)
T ss_pred ------c------cEE--EeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 1 222 458888999999999999999996543
No 60
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.38 E-value=1.1e-11 Score=112.59 Aligned_cols=158 Identities=18% Similarity=0.147 Sum_probs=108.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhhccCCEEE
Q 021401 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (313)
Q Consensus 112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~e~i~~ADvIi 183 (313)
|+|+||| .|+||.++++.|.+. |++|+++.|..++..+.+.+ .|+.. .....+..++++++|+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~~ea~~~aDvVi 73 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTGADNAEAAKRADVVI 73 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEEeChHHHHhcCCEEE
Confidence 6899997 999999999999998 98888776654333222221 12210 001236678899999999
Q ss_pred EcccchhHHHHHHHHHhcCCCCcEEEEe-cCchh-----------------hhhhhcccCCCCCccEEEeccCCCchhHH
Q 021401 184 LLISDAAQADNYEKIFSCMKPNSILGLS-HGFLL-----------------GHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (313)
Q Consensus 184 LavP~~a~~~vi~ei~~~mk~gaiLid~-~Gv~l-----------------~~~~~~~~~l~~~i~vV~vhPn~pg~~~r 245 (313)
+++|++.+.++++++.+.++ +++|+++ .|+.. ..+++ .+|.+.++|+.+||.+.....
T Consensus 74 lavp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~ 149 (219)
T TIGR01915 74 LAVPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ 149 (219)
T ss_pred EECCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence 99999999999988877775 4777754 56654 22333 455546899999999877643
Q ss_pred HHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHc-CCCce
Q 021401 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFT 289 (313)
Q Consensus 246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~al-G~~~~ 289 (313)
. ...+.+... + ...| ++++.+.+.+|.+.+ |+.-+
T Consensus 150 ~------~~~~~~~~~-~-v~Gd-d~~ak~~v~~L~~~~~G~~~v 185 (219)
T TIGR01915 150 D------VDDEVDCDV-L-VCGD-DEEAKEVVAELAGRIDGLRAL 185 (219)
T ss_pred C------CCCCCCCCE-E-EECC-CHHHHHHHHHHHHhcCCCCcc
Confidence 2 112234444 3 2333 356999999999999 98754
No 61
>PLN02306 hydroxypyruvate reductase
Probab=99.38 E-value=3.8e-12 Score=125.76 Aligned_cols=170 Identities=20% Similarity=0.223 Sum_probs=109.6
Q ss_pred ccccchhhhhhcCCCc-cc---ccccccCCCCEEEEEcccchHHHHHHHHH-hchhhhcCCcEEEEEecCCcccHHH-HH
Q 021401 85 SLANRDEFIVRGGRDL-FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-AR 158 (313)
Q Consensus 85 ~~~~~~e~~v~~G~w~-f~---~~~~~l~GikkIgIIG~G~mG~AlA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~~~-A~ 158 (313)
++..+++. +++|+|. +. ..-.+|.| ++|||||+|.||..+|+.++ .+ |++|++.++........ ..
T Consensus 137 ~i~~~~~~-~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~vA~~l~~~f------Gm~V~~~d~~~~~~~~~~~~ 208 (386)
T PLN02306 137 RIVEADEF-MRAGLYEGWLPHLFVGNLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQSTRLEKFVT 208 (386)
T ss_pred ChHHHHHH-HHcCCCccccccccCCcCCCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCCchhhhhhhh
Confidence 35556666 8889883 21 12368999 99999999999999999985 78 99986555432211110 01
Q ss_pred HCCc-------eecC-CCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhh
Q 021401 159 AAGF-------TEEN-GTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQS 221 (313)
Q Consensus 159 ~~G~-------~~~~-~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~ 221 (313)
..|. .... ....+++|++++||+|++|+|.+..++ +++ +.++.||+|++|+.++ |-. +..+++
T Consensus 209 ~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 209 AYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred hhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 1221 0000 012489999999999999999998876 887 8999999999999764 532 233332
Q ss_pred cccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEecc-CCCHHHHH
Q 021401 222 IGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (313)
Q Consensus 222 ~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e 275 (313)
+......++|+..+|. +.. .++.. -|.++|||- ..+.+..+
T Consensus 289 -g~i~gAaLDVf~~EP~-~~~---~L~~~--------pNVilTPHiag~T~e~~~ 330 (386)
T PLN02306 289 -NPMFRVGLDVFEDEPY-MKP---GLADM--------KNAVVVPHIASASKWTRE 330 (386)
T ss_pred -CCeeEEEEeCCCCCCC-Ccc---hHhhC--------CCEEECCccccCcHHHHH
Confidence 2233345677777884 221 24432 489999985 23444433
No 62
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.36 E-value=4.9e-12 Score=118.00 Aligned_cols=149 Identities=21% Similarity=0.256 Sum_probs=122.2
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc----EEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~-A~~~G~~~~~~~~~~~~e~i~~ADvIiLav 186 (313)
+++||||.|+|..++++++... |+ +++... +...+... .+..|+.. +.+..++++.+|++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~-~~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv 69 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASV-QTERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV 69 (267)
T ss_pred CceeEechhhhHHHHHhccccc------CCCchhheeeec-CchhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence 5789999999999999999888 76 343333 33444444 67778764 445588999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEe
Q 021401 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (313)
+|+.+.+++.++...+..++||+ ...|+++..++. .++...++||+|||+|... | +|+.+ ++.
T Consensus 70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~~v-------~-----eg~sv-~~~ 133 (267)
T KOG3124|consen 70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPSVV-------G-----EGASV-YAI 133 (267)
T ss_pred cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChhhh-------h-----cCcEE-Eee
Confidence 99999999999888788888876 888999888876 5556689999999999987 3 77875 899
Q ss_pred ccCCCHHHHHHHHHHHHHcCCC
Q 021401 266 HQDVDGRATNVALGWSVALGSP 287 (313)
Q Consensus 266 ~~d~~~ea~e~a~~L~~alG~~ 287 (313)
..+++.+..+++++++..+|..
T Consensus 134 g~~~~~~D~~l~~~ll~~vG~~ 155 (267)
T KOG3124|consen 134 GCHATNEDLELVEELLSAVGLC 155 (267)
T ss_pred CCCcchhhHHHHHHHHHhcCcc
Confidence 8899999999999999999964
No 63
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.36 E-value=1.7e-12 Score=109.94 Aligned_cols=114 Identities=26% Similarity=0.314 Sum_probs=74.9
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~ 191 (313)
++|+|||.|++|.++++.|.+. |++|.-.+.++..+.+++... .. .....+++|+++++|+|+|++||+++
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~~--~~-~~~~~~~~~~~~~aDlv~iavpDdaI 81 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAAF--IG-AGAILDLEEILRDADLVFIAVPDDAI 81 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC----T-T-----TTGGGCC-SEEEE-S-CCHH
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCcccccccccc--cc-cccccccccccccCCEEEEEechHHH
Confidence 8999999999999999999999 998654444444444444332 21 12245778999999999999999999
Q ss_pred HHHHHHHHhc--CCCCcEEEEecCch-hhhhhhcccCCCCCccEEEecc
Q 021401 192 ADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSIGLDFPKNIGVIAVCP 237 (313)
Q Consensus 192 ~~vi~ei~~~--mk~gaiLid~~Gv~-l~~~~~~~~~l~~~i~vV~vhP 237 (313)
.++.+++... .++|++|++++|.. ...++. .-..+..+...||
T Consensus 82 ~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 82 AEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP 127 (127)
T ss_dssp HHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred HHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence 9999999987 89999999999874 434432 1123566777887
No 64
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.34 E-value=2.7e-11 Score=115.05 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=104.3
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh---hhccCCEEEEcccc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE---TISGSDLVLLLISD 188 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e---~i~~ADvIiLavP~ 188 (313)
|+|||||+|.||.++|++|.+. |++|.++++. ++..+...+.|... ..+.++ .++++|+|++++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~-~~~~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHD-QDAVKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence 5899999999999999999999 9988765554 44455566666653 235544 44678999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEe
Q 021401 189 AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (313)
Q Consensus 189 ~a~~~vi~ei~~~mk~gaiLid~~Gv~---l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (313)
....++++++.+.+++|++|+|++... ...... ..-..+++|+.....+.... -+ .|. + +.+
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~--~~~~~g~~~vda~vsGg~~~----a~-------~G~-~-~~~ 134 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYK--LLKEKGIHLLDCGTSGGVWG----RE-------RGY-C-FMI 134 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHH--HHHhcCCeEEecCCCCCHHH----Hh-------cCC-e-eee
Confidence 977779999999999999999987652 111111 12245678888655442221 11 242 3 556
Q ss_pred ccCCCHHHHHHHHHHHHHcCC
Q 021401 266 HQDVDGRATNVALGWSVALGS 286 (313)
Q Consensus 266 ~~d~~~ea~e~a~~L~~alG~ 286 (313)
..+ +++.+.++.+++.+|.
T Consensus 135 gG~--~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 135 GGD--GEAFARAEPLFADVAP 153 (298)
T ss_pred CCC--HHHHHHHHHHHHHhcC
Confidence 654 7899999999999996
No 65
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.33 E-value=1.7e-11 Score=113.66 Aligned_cols=133 Identities=20% Similarity=0.229 Sum_probs=102.9
Q ss_pred EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEE-EecCchhhhhh
Q 021401 142 VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQ 220 (313)
Q Consensus 142 ~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~ 220 (313)
+|++..|+.++..+.+.+.|+.. ..+..++++++|+|||++||+...++++++.+.+.++++|+ .++|+.+..++
T Consensus 11 ~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~ 86 (245)
T TIGR00112 11 DIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLS 86 (245)
T ss_pred eEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHHH
Confidence 57676665444334445567653 45778899999999999999999999999988777777665 78899998887
Q ss_pred hcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCceeecChhHH
Q 021401 221 SIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE 297 (313)
Q Consensus 221 ~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e 297 (313)
. .++.+..++|+|||+|... | .|++. +++.++.+.+..+.++.||..+| .+++.. |++
T Consensus 87 ~---~~~~~~~ivR~mPn~~~~~-------~-----~g~t~-~~~~~~~~~~~~~~v~~lf~~~G--~~~~v~-E~~ 144 (245)
T TIGR00112 87 Q---LLGGTRRVVRVMPNTPAKV-------G-----AGVTA-IAANANVSEEDRALVLALFKAVG--EVVELP-EAL 144 (245)
T ss_pred H---HcCCCCeEEEECCChHHHH-------h-----CCeEE-EecCCCCCHHHHHHHHHHHHhCC--CEEEEC-HHH
Confidence 6 5665668999999998876 3 46777 78888899999999999999999 444444 443
No 66
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.33 E-value=3.1e-11 Score=114.73 Aligned_cols=151 Identities=15% Similarity=0.082 Sum_probs=104.4
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~ 191 (313)
|+|||||+|+||.++|++|.+. |++|.++++.. + .+...+.|... ..+..|++++||+||+++|+...
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~-~-~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGP-V-ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCH-h-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence 4799999999999999999999 99887776543 2 34445667653 45788999999999999999865
Q ss_pred H-HHHH---HHHhcCCCCcEEEEecCchhhhhhhcc-cCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEec
Q 021401 192 A-DNYE---KIFSCMKPNSILGLSHGFLLGHLQSIG-LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (313)
Q Consensus 192 ~-~vi~---ei~~~mk~gaiLid~~Gv~l~~~~~~~-~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (313)
. +++. .+.+.+++|++|+|++.+.....++.. ..-..++.|+. +|-.-+.. ..+.| .-. +...
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~---~a~~g-------~l~-~~~g 136 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD-APVSGGEI---GAREG-------TLS-IMVG 136 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHH---HHhcC-------cEE-EEEc
Confidence 4 4663 367778999999999887543221100 11134677887 58332222 22322 323 3344
Q ss_pred cCCCHHHHHHHHHHHHHcCCCc
Q 021401 267 QDVDGRATNVALGWSVALGSPF 288 (313)
Q Consensus 267 ~d~~~ea~e~a~~L~~alG~~~ 288 (313)
. +++.++.++.+++.+|...
T Consensus 137 G--~~~~~~~~~p~l~~~g~~~ 156 (292)
T PRK15059 137 G--DEAVFERVKPLFELLGKNI 156 (292)
T ss_pred C--CHHHHHHHHHHHHHHcCCc
Confidence 4 3788999999999999643
No 67
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.32 E-value=5.4e-11 Score=112.15 Aligned_cols=154 Identities=20% Similarity=0.232 Sum_probs=109.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-----------CCceec---------CCCcC
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE---------NGTLG 170 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~---------~~~~~ 170 (313)
+++|+|||.|.||.++|..+... |++|++.++. ++..+.+.+ .|...+ -....
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVS-ADRLEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 48999999999999999999999 9998776654 333322211 232100 00123
Q ss_pred CHHhhhccCCEEEEcccchhH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 021401 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (313)
Q Consensus 171 ~~~e~i~~ADvIiLavP~~a~--~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (313)
+. +.+++||+||.++|.... ..++.++.+.++++++|+ +++++.+..+.+ .+....++++.|+--|.+.+
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~---~~~~~~r~~g~h~~~p~~~~--- 149 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS---ATDRPERFIGIHFMNPVPVM--- 149 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEeeccCCcccC---
Confidence 55 457899999999998754 347889999999999886 888887766654 23334579999997666652
Q ss_pred HHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021401 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
+ + .-+.+...++++.++.+..+++.+|..-+
T Consensus 150 ---~------~--vei~~g~~t~~~~~~~~~~~~~~~gk~~v 180 (292)
T PRK07530 150 ---K------L--VELIRGIATDEATFEAAKEFVTKLGKTIT 180 (292)
T ss_pred ---c------e--EEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 1 1 23677778889999999999999996543
No 68
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.32 E-value=2.9e-11 Score=114.83 Aligned_cols=147 Identities=16% Similarity=0.143 Sum_probs=102.3
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc---CCEEEEcccc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~---ADvIiLavP~ 188 (313)
|+|||||+|+||.++|++|.+. |++|+++++. ++..+...+.|... ..+.++++++ +|+|++++|+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~-~~~~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVN-QEAVDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence 5899999999999999999999 9988766554 34445556677653 4578888876 6999999999
Q ss_pred h-hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021401 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (313)
Q Consensus 189 ~-a~~~vi~ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (313)
. ...++++++.+.+++|++|+|++.... ..+.+ ..-..++.|+. +|-.-++. .-+ .|. . +.
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~vd-apV~G~~~---~a~-------~g~-~-~~ 134 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAE--ELAERGIHYVD-CGTSGGVW---GLR-------NGY-C-LM 134 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHH--HHHHcCCeEEe-CCCCCCHH---HHh-------cCC-e-EE
Confidence 8 556688999999999999999876632 22211 11123566654 33111111 011 243 3 45
Q ss_pred eccCCCHHHHHHHHHHHHHcCC
Q 021401 265 VHQDVDGRATNVALGWSVALGS 286 (313)
Q Consensus 265 p~~d~~~ea~e~a~~L~~alG~ 286 (313)
+..+ +++.+.++.+++.+|.
T Consensus 135 ~gG~--~~~~~~~~~~l~~~~~ 154 (299)
T PRK12490 135 VGGD--KEIYDRLEPVFKALAP 154 (299)
T ss_pred ecCC--HHHHHHHHHHHHHhcC
Confidence 6654 6789999999999996
No 69
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.31 E-value=9.2e-11 Score=111.72 Aligned_cols=153 Identities=12% Similarity=0.094 Sum_probs=106.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~~ 170 (313)
|++|+|||.|.||.++|..|.+. |++|++.++.. ...+. ..+.|..+.. ....
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~-~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADP-AAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence 47899999999999999999999 99987776553 22222 2234532100 1245
Q ss_pred CHHhhhccCCEEEEcccchhH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 021401 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (313)
Q Consensus 171 ~~~e~i~~ADvIiLavP~~a~--~~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (313)
++.+++++||+|+.++|.... ..++.++.+..+++.++. -+++.....+.+ .++....++..||-.|...+
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p~~~~--- 148 (308)
T PRK06129 75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINPPYLI--- 148 (308)
T ss_pred cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCCcccC---
Confidence 778899999999999998743 347777777666666554 233334444443 33445679999996654331
Q ss_pred HHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021401 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (313)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~ 287 (313)
.-..+++....+++.++.++.+++.+|..
T Consensus 149 -----------~lveiv~~~~t~~~~~~~~~~~~~~lG~~ 177 (308)
T PRK06129 149 -----------PVVEVVPAPWTAPATLARAEALYRAAGQS 177 (308)
T ss_pred -----------ceEEEeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 12347888888999999999999999954
No 70
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.30 E-value=6.4e-12 Score=121.50 Aligned_cols=135 Identities=19% Similarity=0.187 Sum_probs=92.6
Q ss_pred cccchhhhhhcCCCccc--ccccccCCCCEEEEEcccchHHHHHHHH-HhchhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021401 86 LANRDEFIVRGGRDLFK--LLPDAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (313)
Q Consensus 86 ~~~~~e~~v~~G~w~f~--~~~~~l~GikkIgIIG~G~mG~AlA~~L-r~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (313)
+..+++. +++|.|.+. ....+|.| ++|||||+|+||.++|+.| +.+ |++|+..++. .... ...++
T Consensus 121 ~~~~~~~-~~~~~~~~~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~~------g~~V~~~d~~-~~~~---~~~~~ 188 (332)
T PRK08605 121 FNQIQTK-VREHDFRWEPPILSRSIKD-LKVAVIGTGRIGLAVAKIFAKGY------GSDVVAYDPF-PNAK---AATYV 188 (332)
T ss_pred hHHHHHH-HHhCCcccccccccceeCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCC-ccHh---HHhhc
Confidence 4445556 788877532 22468999 9999999999999999999 667 9987654433 2211 11222
Q ss_pred eecCCCcCCHHhhhccCCEEEEcccchhHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEE
Q 021401 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVI 233 (313)
Q Consensus 163 ~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~-ei~~~mk~gaiLid~~-Gv~l------~~~~~~~~~l~~~i~vV 233 (313)
. ...++++++++||+|++|+|.+..++ +++ +.++.||+|++|++++ |..+ ..+++ +.......+|.
T Consensus 189 ~----~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~-g~i~gaalDV~ 263 (332)
T PRK08605 189 D----YKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDN-GLIKGAALDTY 263 (332)
T ss_pred c----ccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHh-CCeeEEEEecc
Confidence 2 13488999999999999999999877 444 7889999999999765 4421 22222 22222346777
Q ss_pred Eecc
Q 021401 234 AVCP 237 (313)
Q Consensus 234 ~vhP 237 (313)
..+|
T Consensus 264 ~~Ep 267 (332)
T PRK08605 264 EFER 267 (332)
T ss_pred cCCC
Confidence 7776
No 71
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.29 E-value=6.5e-11 Score=108.00 Aligned_cols=157 Identities=19% Similarity=0.166 Sum_probs=105.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH-HCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~ 189 (313)
||+|+|||.|+||.++|+.+.+. |++|+++.+++++..+.+. ..+... +..+++++++.+|+|+|++|-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i---~~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLI---TGGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhcccc---ccCChHHHHhcCCEEEEeccHH
Confidence 58999999999999999999999 9999999888776554333 333321 2458899999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecC-----chh-------------hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhc
Q 021401 190 AQADNYEKIFSCMKPNSILGLSHG-----FLL-------------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (313)
Q Consensus 190 a~~~vi~ei~~~mk~gaiLid~~G-----v~l-------------~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G 251 (313)
.+.+++.++.+.+. |+||+|+.= ... ..+++ .+|.. ++|..-=+.+.. .++++
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~---~lp~a-kVVkAFn~i~a~----~l~~~ 142 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAK---LLPGA-KVVKAFNTIPAA----VLADL 142 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHH---HCCCc-chhhhhcccCHH----HhccC
Confidence 99999999999886 899997641 100 11111 23322 444322222222 22322
Q ss_pred ccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021401 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 252 ~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
..-. +...++...+ |.++.+.+.+|.+.+|+.-+
T Consensus 143 ~~~~--~~~~v~vagD--D~~Ak~~v~~L~~~iG~~~l 176 (211)
T COG2085 143 AKPG--GRRDVLVAGD--DAEAKAVVAELAEDIGFRPL 176 (211)
T ss_pred CCcC--CceeEEEecC--cHHHHHHHHHHHHhcCccee
Confidence 2111 2223233333 36899999999999998754
No 72
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.29 E-value=3.6e-11 Score=113.19 Aligned_cols=151 Identities=20% Similarity=0.214 Sum_probs=104.4
Q ss_pred EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHH
Q 021401 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (313)
Q Consensus 113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~ 192 (313)
+|||||+|+||.++|+.|.+. |++|++++++ ++..+.+.+.|... ..+.++++++||+|++++|+....
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIG-PEVADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence 589999999999999999999 9998766554 44455666677653 457889999999999999998665
Q ss_pred H-HH---HHHHhcCCCCcEEEEecCchhh---hhhhcccCC-CCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021401 193 D-NY---EKIFSCMKPNSILGLSHGFLLG---HLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (313)
Q Consensus 193 ~-vi---~ei~~~mk~gaiLid~~Gv~l~---~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (313)
+ ++ +.+.+.+++|++|+|++.+... .+.+ .+ .++++|+. +|- .+... .... |... +.
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~---~l~~~g~~~~~-~pv-~g~~~--~a~~-------g~l~-i~ 134 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAK---AVKEKGIDYLD-APV-SGGEI--GAIE-------GTLS-IM 134 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCCEEe-cCC-CCCHH--HHhc-------CCEE-EE
Confidence 4 54 3477889999999998776432 2222 12 23677777 573 22221 1111 2333 34
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCceeec
Q 021401 265 VHQDVDGRATNVALGWSVALGSPFTFAT 292 (313)
Q Consensus 265 p~~d~~~ea~e~a~~L~~alG~~~~~~t 292 (313)
+.. ++++.+.++.+++.+|.. ++.+
T Consensus 135 ~gg--~~~~~~~~~~ll~~lg~~-~~~~ 159 (291)
T TIGR01505 135 VGG--DQAVFDRVKPLFEALGKN-IVLV 159 (291)
T ss_pred ecC--CHHHHHHHHHHHHHhcCC-eEEe
Confidence 444 368999999999999953 4433
No 73
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.27 E-value=1.5e-10 Score=111.87 Aligned_cols=154 Identities=16% Similarity=0.114 Sum_probs=112.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH-----------HHCCceecC-----CCcCCHHh
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN-----GTLGDIYE 174 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~-----~~~~~~~e 174 (313)
|++|+|||.|.||.++|..+... |++|.+.+... +..+.+ .+.|..... ....++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAP-GAEAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 58999999999999999999999 99988776543 222111 112211000 12457889
Q ss_pred hhccCCEEEEcccchhHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhc
Q 021401 175 TISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (313)
Q Consensus 175 ~i~~ADvIiLavP~~a~~~--vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G 251 (313)
++++||+|+-++|.+...+ ++.++.+.++++++|. .+++..+..+.+ .+...-+|++.||--|.+-+ .
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~---~~~~p~R~~g~HffnP~~~~-p----- 150 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA---RATHPERCVVGHPFNPVYLL-P----- 150 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH---hcCCcccEEEEecCCccccC-c-----
Confidence 9999999999999887654 8889999999999775 556666655554 33334589999997776653 1
Q ss_pred ccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCc
Q 021401 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (313)
Q Consensus 252 ~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~ 288 (313)
-.=+.++..++++.++.+.++++.+|..-
T Consensus 151 --------LVEVv~g~~T~~e~~~~~~~f~~~lGk~p 179 (321)
T PRK07066 151 --------LVEVLGGERTAPEAVDAAMGIYRALGMRP 179 (321)
T ss_pred --------eEEEeCCCCCCHHHHHHHHHHHHHcCCEe
Confidence 12267888999999999999999999544
No 74
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.23 E-value=1.2e-10 Score=110.03 Aligned_cols=153 Identities=18% Similarity=0.157 Sum_probs=99.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee----------cCCCcCCHHhhhccCC
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE----------ENGTLGDIYETISGSD 180 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~----------~~~~~~~~~e~i~~AD 180 (313)
||+|+|||+|.||.++|..|.+. |++|.+..+. ++..+...+.|... ......+.+++++++|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 73 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARD-PEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADAD 73 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCC
Confidence 57999999999999999999998 9988766654 33333333332100 0001346778899999
Q ss_pred EEEEcccchhHHHHHHHHHhcCCCCcEEEEec-Cchh-------hhhhhcccCCCC-CccEEEeccCCCchhHHHHHHhc
Q 021401 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH-GFLL-------GHLQSIGLDFPK-NIGVIAVCPKGMGPSVRRLYVQG 251 (313)
Q Consensus 181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~-Gv~l-------~~~~~~~~~l~~-~i~vV~vhPn~pg~~~r~lf~~G 251 (313)
+||+++|+....++++++.+.++++++|+++. |+.. ..+++ .++. ....+...|+.+... . +|
T Consensus 74 ~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~---~~~~~~~~~~~~~P~~~~~~----~-~g 145 (325)
T PRK00094 74 LILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE---ELPDLAPIAVLSGPSFAKEV----A-RG 145 (325)
T ss_pred EEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH---HcCCCCceEEEECccHHHHH----H-cC
Confidence 99999999887889999999999999888665 7743 12222 2232 123455567543222 1 12
Q ss_pred ccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCC
Q 021401 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (313)
Q Consensus 252 ~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~ 286 (313)
..... +... .+.+..+.+..+++..|.
T Consensus 146 -----~~~~~-~~~~--~~~~~~~~~~~~l~~~~~ 172 (325)
T PRK00094 146 -----LPTAV-VIAS--TDEELAERVQELFHSPYF 172 (325)
T ss_pred -----CCcEE-EEEe--CCHHHHHHHHHHhCCCCE
Confidence 11222 2222 246788888899988885
No 75
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.23 E-value=2.4e-10 Score=108.44 Aligned_cols=151 Identities=14% Similarity=0.161 Sum_probs=102.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a 190 (313)
|++|+|||+|+||.++|++|.+. |++|.+++++ .+..+...+.|... ..+..+++++||+||+++|+..
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~-~~~~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVN-PQAVDALVDKGATP----AASPAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHH
Confidence 46899999999999999999999 9988766654 44455555566642 4578899999999999999987
Q ss_pred HH-HHHH---HHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEE
Q 021401 191 QA-DNYE---KIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (313)
Q Consensus 191 ~~-~vi~---ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (313)
.. .++. .+.+.+++|++++|++.+.. ..+.. .....++.|+. .|-.-+.. . -+. |.-. +
T Consensus 70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~--~l~~~g~~~ld-apV~g~~~--~-a~~-------g~l~-~ 135 (296)
T PRK15461 70 LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIA--DMQAKGFSMMD-VPVGRTSD--N-AIT-------GTLL-L 135 (296)
T ss_pred HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEEE-ccCCCCHH--H-HHh-------CcEE-E
Confidence 54 4653 47788999999999876643 22221 11123566663 45222221 0 112 2333 3
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCc
Q 021401 264 AVHQDVDGRATNVALGWSVALGSPF 288 (313)
Q Consensus 264 tp~~d~~~ea~e~a~~L~~alG~~~ 288 (313)
.... +++..+.++.+++.+|...
T Consensus 136 ~~gg--~~~~~~~~~p~l~~~g~~~ 158 (296)
T PRK15461 136 LAGG--TAEQVERATPILMAMGNEL 158 (296)
T ss_pred EECC--CHHHHHHHHHHHHHHcCCe
Confidence 3443 3688999999999999643
No 76
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.21 E-value=2.2e-10 Score=108.76 Aligned_cols=147 Identities=18% Similarity=0.142 Sum_probs=104.0
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc---CCEEEEcccc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~---ADvIiLavP~ 188 (313)
|+|||||+|+||.++|++|.+. |++|.++++. ++..+...+.|... ..+.+|+++. +|+|++++|+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~-~~~~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRN-PEAVEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence 5899999999999999999999 9988776555 34445556677763 4578888875 6999999999
Q ss_pred h-hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021401 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (313)
Q Consensus 189 ~-a~~~vi~ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (313)
. ...++++.+.+.+++|.+++|++.... ..+.. ..-..++.|+. +|..=+... =+ .|. . +-
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~~d-apvsG~~~~---a~-------~g~-~-~~ 134 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE--LLAEKGIHFVD-VGTSGGVWG---LE-------RGY-C-LM 134 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH--HHHHcCCEEEe-CCCCcCHHH---Hh-------cCC-e-EE
Confidence 8 455688889999999999998865532 11211 11134678885 774323221 01 243 3 34
Q ss_pred eccCCCHHHHHHHHHHHHHcCC
Q 021401 265 VHQDVDGRATNVALGWSVALGS 286 (313)
Q Consensus 265 p~~d~~~ea~e~a~~L~~alG~ 286 (313)
+..+ +++.+.++.+++.+|.
T Consensus 135 ~gG~--~~~~~~~~~~l~~~~~ 154 (301)
T PRK09599 135 IGGD--KEAVERLEPIFKALAP 154 (301)
T ss_pred ecCC--HHHHHHHHHHHHHHcc
Confidence 5543 6889999999999996
No 77
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.20 E-value=3.8e-10 Score=106.20 Aligned_cols=151 Identities=18% Similarity=0.209 Sum_probs=101.6
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~ 191 (313)
++|||||+|.||.++|+.|.+. |++|+++++ +.+..+...+.|... ..+.++++++||+|++++|+...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~-~~~~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~~ 71 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDR-NPEAVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSPH 71 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC------CCeEEEEcC-CHHHHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 7899999999999999999998 998765544 444455556667653 45788999999999999998776
Q ss_pred HH-HH---HHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021401 192 AD-NY---EKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (313)
Q Consensus 192 ~~-vi---~ei~~~mk~gaiLid~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (313)
.+ ++ +.+.+.+++|++++|++.+... .+.+ .....+++|+.. |-.-+.. . -. .|... +.
T Consensus 72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~--~~~~~g~~~~d~-pv~g~~~-~--a~-------~g~l~-i~ 137 (296)
T PRK11559 72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAA--ALKAKGIEMLDA-PVSGGEP-K--AI-------DGTLS-VM 137 (296)
T ss_pred HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHH--HHHHcCCcEEEc-CCCCCHH-H--Hh-------hCcEE-EE
Confidence 54 55 3578889999999998877542 2222 011224555543 4221111 0 01 12333 33
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCce
Q 021401 265 VHQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 265 p~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
+.. +++..+.+..+++.+|..-+
T Consensus 138 ~gg--~~~~~~~~~~~l~~~~~~~~ 160 (296)
T PRK11559 138 VGG--DKAIFDKYYDLMKAMAGSVV 160 (296)
T ss_pred ECC--CHHHHHHHHHHHHHhcCCeE
Confidence 333 36889999999999996433
No 78
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.19 E-value=1.7e-10 Score=117.22 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=105.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhhcc---CCEEEE
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLL 184 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~e~i~~---ADvIiL 184 (313)
+.+|||||+|.||.++|++|.+. |++|.+++|..++..+...+ .|... -....+++|+++. +|+||+
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEE
Confidence 37899999999999999999999 99998888765444332221 14310 0014578888876 999999
Q ss_pred cccchhHHH-HHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCce
Q 021401 185 LISDAAQAD-NYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (313)
Q Consensus 185 avP~~a~~~-vi~ei~~~mk~gaiLid~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~ 260 (313)
++|+...++ +++.+.+.+++|.+|+|.+-... ....+ ..-.++++|+. +|-.=++. .=+ .|.
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~--~l~~~Gi~fld-apVSGG~~---gA~-------~G~- 144 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIK--EAAEKGLLYLG-MGVSGGEE---GAR-------NGP- 144 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEe-CCCcCCHH---Hhc-------CCC-
Confidence 999988765 88899999999999999876532 12211 12134677765 34111111 001 243
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021401 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (313)
Q Consensus 261 ~iitp~~d~~~ea~e~a~~L~~alG~~ 287 (313)
. |.+..+ +++.+.++.+++.+|.+
T Consensus 145 ~-im~GG~--~~a~~~v~pvL~~ia~k 168 (493)
T PLN02350 145 S-LMPGGS--FEAYKNIEDILEKVAAQ 168 (493)
T ss_pred e-EEecCC--HHHHHHHHHHHHHHhhh
Confidence 4 677765 68999999999999964
No 79
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.19 E-value=3.5e-10 Score=106.70 Aligned_cols=147 Identities=20% Similarity=0.146 Sum_probs=101.5
Q ss_pred EEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH-HHH
Q 021401 116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ-ADN 194 (313)
Q Consensus 116 IIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~-~~v 194 (313)
|||+|+||.++|++|.+. |++|.+++++ ++..+...+.|... ..+..++++++|+||+++|+..+ .++
T Consensus 1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~-~~~~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA------GHPVRVFDLF-PDAVEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhC------CCeEEEEeCC-HHHHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence 699999999999999999 9988776655 34455566667653 45888999999999999998655 567
Q ss_pred H---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCC
Q 021401 195 Y---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (313)
Q Consensus 195 i---~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~ 270 (313)
+ +.+.+.+++|++|+|++++.....+.....+ ..++.|+.. |-. +.. ...+.| ... +-...+
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vda-Pv~-Gg~--~~a~~g-------~l~-~~~gg~-- 135 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDA-PVS-GGV--GGARAG-------TLT-FMVGGV-- 135 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEC-CCC-CCH--HHHhhC-------cEE-EEECCC--
Confidence 7 5788899999999999987542221111122 246777764 622 211 122333 333 333333
Q ss_pred HHHHHHHHHHHHHcCCC
Q 021401 271 GRATNVALGWSVALGSP 287 (313)
Q Consensus 271 ~ea~e~a~~L~~alG~~ 287 (313)
++..+.++.+++.+|..
T Consensus 136 ~~~~~~~~~~l~~~g~~ 152 (288)
T TIGR01692 136 AEEFAAAEPVLGPMGRN 152 (288)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 57889999999999954
No 80
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.18 E-value=6.9e-11 Score=123.98 Aligned_cols=115 Identities=13% Similarity=-0.041 Sum_probs=90.1
Q ss_pred EEEcccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCC-ccEEEeccCCCchhHHHHHHhcccccCCCce
Q 021401 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKN-IGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (313)
Q Consensus 182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~-i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~ 260 (313)
||||+|+..+.++++++.++++++++|+|++|++....+.....++.+ .+||+.|| +.|++ ...|+......++|++
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e-~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRE-SSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCc-chhhhhhChhHhCCCe
Confidence 689999999999999999999999999999999853332211234432 57999999 44554 2233333333345799
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHcCCCceeecChhHHHh
Q 021401 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYK 299 (313)
Q Consensus 261 ~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~~ 299 (313)
+++||.++.+.++++.+++||..+| .+++.+|+++|=+
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~G-a~~~~~~~~~HD~ 116 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAAR-ADVRAMSAEQHDR 116 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcC-CEEEECCHHHHHH
Confidence 9999999999999999999999999 7899999999943
No 81
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.17 E-value=7.8e-10 Score=112.81 Aligned_cols=155 Identities=15% Similarity=0.152 Sum_probs=113.3
Q ss_pred CCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCc
Q 021401 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTL 169 (313)
Q Consensus 110 GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~ 169 (313)
.|++|||||+|.||..+|..+... |++|++.++..+ ..+. ..+.|...+. ...
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e-~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~ 78 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAG-AAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV 78 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe
Confidence 468999999999999999999999 999877766533 3333 2444521000 013
Q ss_pred CCHHhhhccCCEEEEcccchhHHH--HHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHH
Q 021401 170 GDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR 246 (313)
Q Consensus 170 ~~~~e~i~~ADvIiLavP~~a~~~--vi~ei~~~mk~gaiL-id~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~ 246 (313)
.+.++ +++||+||-++|.+...+ ++.++...++++++| ++++++.+..+.. .....-+|++.|.--|.+.+
T Consensus 79 ~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~---~~~~p~r~~G~hff~Pa~v~-- 152 (507)
T PRK08268 79 EALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA---ALKHPERVAGLHFFNPVPLM-- 152 (507)
T ss_pred CCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEeecCCcccC--
Confidence 46655 679999999999888754 677888888999998 4888887766654 22333579999997777764
Q ss_pred HHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021401 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
.-..+++...++++.++.+..+++.+|..-+
T Consensus 153 ------------~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv 183 (507)
T PRK08268 153 ------------KLVEVVSGLATDPAVADALYALARAWGKTPV 183 (507)
T ss_pred ------------eeEEEeCCCCCCHHHHHHHHHHHHHcCCceE
Confidence 1244677778899999999999999996543
No 82
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.16 E-value=6.1e-10 Score=112.71 Aligned_cols=151 Identities=15% Similarity=0.120 Sum_probs=102.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH---HCCceecCCCcCCHHhhhc---cCCEEEE
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETIS---GSDLVLL 184 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~---~~G~~~~~~~~~~~~e~i~---~ADvIiL 184 (313)
+.+|||||+|+||.++|++|.+. |++|.+++|..++..+... ..|... ....+++|+++ ++|+|++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEKTEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEEE
Confidence 36899999999999999999999 9998877766443322221 124321 12458888886 5899999
Q ss_pred cccchhHH-HHHHHHHhcCCCCcEEEEecCch----hhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCc
Q 021401 185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFL----LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (313)
Q Consensus 185 avP~~a~~-~vi~ei~~~mk~gaiLid~~Gv~----l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~ 259 (313)
++|+.... ++++++.+++++|.+|+|.+... ....+. ...++++|+..-=.+ +.. .-+ .|.
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~---l~~~Gi~fldapVSG-G~~---gA~-------~G~ 138 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR---CEEKGILYLGMGVSG-GEE---GAR-------YGP 138 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH---HHHcCCeEEcCCCCC-CHH---HHh-------cCC
Confidence 98887665 58899999999999999987542 111111 224567776532212 111 111 233
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021401 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (313)
Q Consensus 260 ~~iitp~~d~~~ea~e~a~~L~~alG~~ 287 (313)
+ +.+..+ +++.+.++.+++.++.+
T Consensus 139 -~-lm~GG~--~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 139 -S-LMPGGN--KEAYDHVKDILEKCSAK 162 (470)
T ss_pred -E-EEEeCC--HHHHHHHHHHHHHHhhh
Confidence 4 677765 68999999999999975
No 83
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.16 E-value=7.1e-11 Score=116.47 Aligned_cols=150 Identities=17% Similarity=0.199 Sum_probs=99.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
.+|.| ++|||||+|+||+.+|+.|+.+ |++|++.++.... ..... ...++++++++||+|++|
T Consensus 112 ~~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~~~~-----~~~~~-----~~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 112 FSLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPPRAD-----RGDEG-----DFRSLDELVQEADILTFH 174 (378)
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCcccc-----ccccc-----ccCCHHHHHhhCCEEEEe
Confidence 47899 9999999999999999999999 9998655432111 01111 145899999999999999
Q ss_pred ccchhH-----HHHHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcc
Q 021401 186 ISDAAQ-----ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (313)
Q Consensus 186 vP~~a~-----~~vi~-ei~~~mk~gaiLid~~-Gv~------l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~ 252 (313)
+|.+.. ..+++ +.+..||+|++|+.++ |-. +..+++ +......++|...+|. +... ++..
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~-g~~~ga~LDV~e~EP~-~~~~---Ll~~-- 247 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNE-GQKLSVVLDVWEGEPE-LNVE---LLKK-- 247 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHh-CCCcEEEEecCCCCCC-Cchh---hhhc--
Confidence 998873 45786 8899999999999765 532 233332 2222234667778884 2222 3331
Q ss_pred cccCCCceEEEEeccC-CCHHHHH-----HHHHHHHHcCC
Q 021401 253 EINGAGINSSFAVHQD-VDGRATN-----VALGWSVALGS 286 (313)
Q Consensus 253 e~~g~G~~~iitp~~d-~~~ea~e-----~a~~L~~alG~ 286 (313)
.+ ++|||-- .+.+... .+..+-+.+|.
T Consensus 248 ------~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~~ 280 (378)
T PRK15438 248 ------VD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIGH 280 (378)
T ss_pred ------CC-EECCccCcCcHHHHHHHHHHHHHHHHHHHcC
Confidence 23 7899852 3333333 33455556663
No 84
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.14 E-value=7.9e-10 Score=106.74 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=106.2
Q ss_pred HHHHHHHHHhchhhhcCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHH-HHHHH
Q 021401 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYEK 197 (313)
Q Consensus 123 G~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~-~vi~e 197 (313)
|.++|++|.+. |++|+++++..+ ...+...+.|... ..+..|+++++|+||+++|+..+. ++++.
T Consensus 32 GspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~----AaS~aEAAa~ADVVIL~LPd~aaV~eVl~G 101 (341)
T TIGR01724 32 GSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV----VSDDKEAAKHGEIHVLFTPFGKGTFSIART 101 (341)
T ss_pred HHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee----cCCHHHHHhCCCEEEEecCCHHHHHHHHHH
Confidence 88999999999 999888876532 1223466678764 457889999999999999999876 58788
Q ss_pred HHhcCCCCcEEEEecCchhh----hhhhcccC-CCCCccEEEeccC-CCchhHHHHHHhcccccCCCceEEEEeccCCCH
Q 021401 198 IFSCMKPNSILGLSHGFLLG----HLQSIGLD-FPKNIGVIAVCPK-GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (313)
Q Consensus 198 i~~~mk~gaiLid~~Gv~l~----~~~~~~~~-l~~~i~vV~vhPn-~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ 271 (313)
+++++++|++|+|++-+... .++. .+. -++|+.+...||- -|+..-.+.|.-+ |.. +.-..-+++
T Consensus 102 Laa~L~~GaIVID~STIsP~t~~~~~e~-~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~------~~~--~~~~~~A~e 172 (341)
T TIGR01724 102 IIEHVPENAVICNTCTVSPVVLYYSLEK-ILRLKRTDVGISSMHPAAVPGTPQHGHYVIG------GKP--TAGKEMATE 172 (341)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHH-HhhcCccccCeeccCCCCCCCCCCCceeeec------ccc--ccccccCCH
Confidence 99999999999999876421 2221 122 2578999999993 3444433334432 222 345667889
Q ss_pred HHHHHHHHHHHHcCCC
Q 021401 272 RATNVALGWSVALGSP 287 (313)
Q Consensus 272 ea~e~a~~L~~alG~~ 287 (313)
+.++...+|.++.|..
T Consensus 173 e~i~~~~el~~~~~~~ 188 (341)
T TIGR01724 173 EQISKCVELAKSTGKK 188 (341)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999999953
No 85
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.13 E-value=4.2e-10 Score=113.80 Aligned_cols=147 Identities=18% Similarity=0.142 Sum_probs=102.4
Q ss_pred EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC---C--ceecCCCcCCHHhhh---ccCCEEEE
Q 021401 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETI---SGSDLVLL 184 (313)
Q Consensus 113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---G--~~~~~~~~~~~~e~i---~~ADvIiL 184 (313)
.|||||+|+||.++|++|.+. |++|.+++|+.++. +...+. | +.. ..+.++++ +++|+|++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~~-~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil 69 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEKT-DEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIML 69 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHHH-HHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEE
Confidence 489999999999999999999 99988777765443 333333 2 332 34666665 47999999
Q ss_pred cccchhH-HHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCce
Q 021401 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (313)
Q Consensus 185 avP~~a~-~~vi~ei~~~mk~gaiLid~~Gv~---l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~ 260 (313)
++|+... .++++++.+++++|.+|+|.+... ...... ....+++.||.....+ +.. .=+ .|.
T Consensus 70 ~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~--~l~~~gi~fvdapVsG-G~~---gA~-------~G~- 135 (467)
T TIGR00873 70 MVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYK--ELKAKGILFVGSGVSG-GEE---GAR-------KGP- 135 (467)
T ss_pred ECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHH--HHHhcCCEEEcCCCCC-CHH---HHh-------cCC-
Confidence 9999654 558899999999999999988542 111111 1224578888766654 221 111 233
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021401 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (313)
Q Consensus 261 ~iitp~~d~~~ea~e~a~~L~~alG~~ 287 (313)
+ +.+..+ .++.+.++.+++.++.+
T Consensus 136 ~-im~GG~--~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 136 S-IMPGGS--AEAWPLVAPIFQKIAAK 159 (467)
T ss_pred c-CCCCCC--HHHHHHHHHHHHHHhhh
Confidence 3 556665 68999999999999965
No 86
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.13 E-value=1.5e-09 Score=105.74 Aligned_cols=146 Identities=11% Similarity=0.143 Sum_probs=97.8
Q ss_pred HHHHHHHHHhchhhhcCCcEEEEEecCCcc----cHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh-HHHHHHH
Q 021401 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEK 197 (313)
Q Consensus 123 G~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~----s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a-~~~vi~e 197 (313)
|.++|++|.+. |++|++++++... ..+...+.|+.. ..+..+++++||+||+++|+.. ..+++++
T Consensus 32 G~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~----asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~ 101 (342)
T PRK12557 32 GSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV----VSDDAEAAKHGEIHILFTPFGKKTVEIAKN 101 (342)
T ss_pred HHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE----eCCHHHHHhCCCEEEEECCCcHHHHHHHHH
Confidence 88999999998 9988777765331 234455677653 4577889999999999999988 5668899
Q ss_pred HHhcCCCCcEEEEecCchhh----hhhhcccCCCC---CccEEEeccCCCchhHHHHHHhcccccCCCceEEE-----Ee
Q 021401 198 IFSCMKPNSILGLSHGFLLG----HLQSIGLDFPK---NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF-----AV 265 (313)
Q Consensus 198 i~~~mk~gaiLid~~Gv~l~----~~~~~~~~l~~---~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii-----tp 265 (313)
+.+.++++++|+|++.+... .+.. .++. .+.++..|| +... |.+. +.-+++ ++
T Consensus 102 L~~~L~~g~IVId~ST~~~~~~s~~l~~---~l~~~~~~~gi~~~~p---~~v~------Gae~---g~l~Vm~gg~t~~ 166 (342)
T PRK12557 102 ILPHLPENAVICNTCTVSPVVLYYSLEG---ELRTKRKDVGISSMHP---AAVP------GTPQ---HGHYVIAGKTTNG 166 (342)
T ss_pred HHhhCCCCCEEEEecCCCHHHHHHHHHH---HhcccccccCeeecCC---cccc------cccc---chheEEeCCCccc
Confidence 99999999999998876432 2222 2232 334444454 3220 1100 111223 23
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCceeecCh
Q 021401 266 HQDVDGRATNVALGWSVALGSPFTFATTL 294 (313)
Q Consensus 266 ~~d~~~ea~e~a~~L~~alG~~~~~~tT~ 294 (313)
....+++.++.++.+++++| .+++.++.
T Consensus 167 ~~~~~~e~~e~v~~LL~a~G-~~v~~~~~ 194 (342)
T PRK12557 167 TELATEEQIEKCVELAESIG-KEPYVVPA 194 (342)
T ss_pred ccCCCHHHHHHHHHHHHHcC-CEEEEeCH
Confidence 44557899999999999999 44566554
No 87
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.11 E-value=2.5e-09 Score=101.43 Aligned_cols=153 Identities=15% Similarity=0.164 Sum_probs=109.3
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~~ 170 (313)
|++|||||.|.||..+|..+... |++|++.++..+ ..+. ..+.|...+. ....
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 77 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEE-LATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT 77 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC
Confidence 47999999999999999999999 999877766533 2222 3333422100 0134
Q ss_pred CHHhhhccCCEEEEcccchhHHH--HHHHHHhcC-CCCcEEEE-ecCchhhhhhhcccCCCCCccEEEeccCCCchhHHH
Q 021401 171 DIYETISGSDLVLLLISDAAQAD--NYEKIFSCM-KPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR 246 (313)
Q Consensus 171 ~~~e~i~~ADvIiLavP~~a~~~--vi~ei~~~m-k~gaiLid-~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~ 246 (313)
+. +.+++||+||-++|.+...+ ++.++...+ +++++|.. +++..+..+.. .....-++++.|+-.|.+.+
T Consensus 78 ~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~---~~~~~~r~~g~hf~~P~~~~-- 151 (286)
T PRK07819 78 DL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA---ATKRPGRVLGLHFFNPVPVL-- 151 (286)
T ss_pred CH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCccEEEEecCCCcccC--
Confidence 55 56899999999999988754 777777777 89999875 55555655543 22223479999997777663
Q ss_pred HHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHH-HcCCCc
Q 021401 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV-ALGSPF 288 (313)
Q Consensus 247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~-alG~~~ 288 (313)
+ -.=+++...++++.++.+..++. .+|..-
T Consensus 152 ----~--------lvElv~~~~T~~~~~~~~~~~~~~~lgk~p 182 (286)
T PRK07819 152 ----P--------LVELVPTLVTSEATVARAEEFASDVLGKQV 182 (286)
T ss_pred ----c--------eEEEeCCCCCCHHHHHHHHHHHHHhCCCCc
Confidence 1 12378888999999999999988 599653
No 88
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.10 E-value=1.4e-10 Score=114.49 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=100.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
.+|.| ++|||||+|+||..+|+.++.+ |++|++.++.... . .+.. ...+++|++++||+|++|
T Consensus 112 ~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~-~~~~----~~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 112 VDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----A-EGDG----DFVSLERILEECDVISLH 174 (381)
T ss_pred CCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----c-ccCc----cccCHHHHHhhCCEEEEe
Confidence 57899 9999999999999999999999 9998665432211 1 1211 145899999999999999
Q ss_pred ccchh-----HHHHHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcc
Q 021401 186 ISDAA-----QADNYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (313)
Q Consensus 186 vP~~a-----~~~vi~-ei~~~mk~gaiLid~~-Gv~l------~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~ 252 (313)
+|.+. ...+++ +.+..||+|++|+.++ |-.+ ..+++ +......++|...+|. +... +..
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~-g~i~~a~LDV~e~EP~-~~~~---L~~--- 246 (381)
T PRK00257 175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLS-GEDLDAVLDVWEGEPQ-IDLE---LAD--- 246 (381)
T ss_pred CcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh-CCCcEEEEeCCCCCCC-CChh---hhh---
Confidence 99986 345776 7899999999999765 5322 22222 2222334666777884 2222 222
Q ss_pred cccCCCceEEEEeccC-CCHHHHH-----HHHHHHHHcCCC
Q 021401 253 EINGAGINSSFAVHQD-VDGRATN-----VALGWSVALGSP 287 (313)
Q Consensus 253 e~~g~G~~~iitp~~d-~~~ea~e-----~a~~L~~alG~~ 287 (313)
.|.++|||-- .+.+..+ .++.+.+.++..
T Consensus 247 ------~nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~ 281 (381)
T PRK00257 247 ------LCTIATPHIAGYSLDGKARGTAQIYQALCRFFGIP 281 (381)
T ss_pred ------CCEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 3788999863 3334332 334444555544
No 89
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.09 E-value=2.5e-09 Score=109.10 Aligned_cols=154 Identities=12% Similarity=0.127 Sum_probs=111.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~~ 170 (313)
+++|+|||.|.||..+|..+... |++|++.++..+. .+. ..+.|...+. ....
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 77 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAEA-LARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVT 77 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeC
Confidence 48999999999999999999999 9998877765332 222 2334421000 0134
Q ss_pred CHHhhhccCCEEEEcccchhHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHH
Q 021401 171 DIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (313)
Q Consensus 171 ~~~e~i~~ADvIiLavP~~a~~~--vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (313)
++++ +++||+||.++|.....+ ++.++...++++++|. .+++..+..+.. .+....++++.|.--|.+.+
T Consensus 78 ~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~---~~~~p~r~~G~HFf~Papv~--- 150 (503)
T TIGR02279 78 DLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA---GLARPERVAGLHFFNPAPVM--- 150 (503)
T ss_pred CHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCcccceEEEeccCccccC---
Confidence 6654 579999999999876643 7778888899999876 677777655543 33334579999997777764
Q ss_pred HHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021401 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
.-..+.+...++++.++.+..+++.+|..-+
T Consensus 151 -----------~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv 181 (503)
T TIGR02279 151 -----------ALVEVVSGLATAAEVAEQLYETALAWGKQPV 181 (503)
T ss_pred -----------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeee
Confidence 1244677888999999999999999996543
No 90
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=99.09 E-value=1.5e-09 Score=105.27 Aligned_cols=167 Identities=16% Similarity=0.112 Sum_probs=121.1
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh-ccCCEEEEcccchh
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i-~~ADvIiLavP~~a 190 (313)
.+|||||+|+||+=+|.-+.+. |+.++...|.+ -...+.+.|..- .+.+.+++ +..|+|++|+.--.
T Consensus 53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsd--yssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSD--YSSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc------CceeEecCcch--hHHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence 8999999999999999999999 99887777765 234555666441 34555544 68999999999888
Q ss_pred HHHHHHHHHhc-CCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccC-
Q 021401 191 QADNYEKIFSC-MKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD- 268 (313)
Q Consensus 191 ~~~vi~ei~~~-mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d- 268 (313)
+.+++...-.. +|.|++++|+-+++.-..+.....+|++++++.+|| +-|+.. + --.++|-+.++-.+.-
T Consensus 121 iekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHp-mfGPks------v-nh~wqglpfVydkvRig 192 (480)
T KOG2380|consen 121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHP-MFGPKS------V-NHEWQGLPFVYDKVRIG 192 (480)
T ss_pred HHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecC-CcCCCc------C-CCccccCceEEEEeecc
Confidence 88888765444 899999999888863222211237899999999999 334431 0 1123566887766542
Q ss_pred ---CCHHHHHHHHHHHHHcCCCceeecChhHHHh
Q 021401 269 ---VDGRATNVALGWSVALGSPFTFATTLEQEYK 299 (313)
Q Consensus 269 ---~~~ea~e~a~~L~~alG~~~~~~tT~~~e~~ 299 (313)
..++.-|.+.+++.-.|+ ..+++|.++|-+
T Consensus 193 ~~~~r~ercE~fleIf~cegc-kmVemS~eeHDk 225 (480)
T KOG2380|consen 193 YAASRPERCEFFLEIFACEGC-KMVEMSYEEHDK 225 (480)
T ss_pred ccccchHHHHHHHHHHHhcCC-eEEEEEeecccc
Confidence 237888999999999995 567888888744
No 91
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.06 E-value=3.1e-09 Score=94.45 Aligned_cols=150 Identities=15% Similarity=0.164 Sum_probs=100.8
Q ss_pred EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHH-----------HHCCcee---------cCCCcCCH
Q 021401 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTE---------ENGTLGDI 172 (313)
Q Consensus 113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~---------~~~~~~~~ 172 (313)
+|+|||.|.||.++|..+... |++|.+.+...+ ..+.+ .+.|... .-....++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE-ALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDL 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH-HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSG
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH-HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCH
Confidence 699999999999999999999 999887766432 22111 1112100 00113577
Q ss_pred HhhhccCCEEEEcccchhHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHH
Q 021401 173 YETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (313)
Q Consensus 173 ~e~i~~ADvIiLavP~~a~~~--vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~ 249 (313)
+++. +||+||=++|.....+ ++.++.+.++++++|. .+++..+..+.. .++..-+|++.|+-.|...+ .
T Consensus 74 ~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~~~~-~--- 145 (180)
T PF02737_consen 74 EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPPHLM-P--- 145 (180)
T ss_dssp GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SSTTT------
T ss_pred HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEecccccccC-c---
Confidence 7777 9999999999877643 8999999999999986 788888877765 33444689999997776642 1
Q ss_pred hcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021401 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (313)
Q Consensus 250 ~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~ 287 (313)
-.=+.++..++++.++.+.++++.+|..
T Consensus 146 ----------lVEvv~~~~T~~~~~~~~~~~~~~~gk~ 173 (180)
T PF02737_consen 146 ----------LVEVVPGPKTSPETVDRVRALLRSLGKT 173 (180)
T ss_dssp ----------EEEEEE-TTS-HHHHHHHHHHHHHTT-E
T ss_pred ----------eEEEeCCCCCCHHHHHHHHHHHHHCCCE
Confidence 1226889999999999999999999843
No 92
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.01 E-value=5.6e-09 Score=103.35 Aligned_cols=161 Identities=17% Similarity=0.139 Sum_probs=99.4
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH-------------------HCC-ceecCCCcCC
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLGD 171 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-------------------~~G-~~~~~~~~~~ 171 (313)
|+|+|||+|.||..+|..|.+. |++|++.++. ++..+... +.| +.. ..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~-~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~ 69 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDID-QEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTD 69 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc------CCeEEEEECC-HHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECC
Confidence 5899999999999999999998 9987655543 33222111 123 221 346
Q ss_pred HHhhhccCCEEEEcccchh----------HHHHHHHHHhcCCCCcEEEEecCchh---hhh----hhcccCCCCCcc-EE
Q 021401 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFLL---GHL----QSIGLDFPKNIG-VI 233 (313)
Q Consensus 172 ~~e~i~~ADvIiLavP~~a----------~~~vi~ei~~~mk~gaiLid~~Gv~l---~~~----~~~~~~l~~~i~-vV 233 (313)
..+++++||+||+++|... ....++.+.+.+++|++|++.+++.. ..+ .+.........+ .+
T Consensus 70 ~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 70 YEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred HHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 7788999999999999653 45567788899999999998876521 111 110000111233 36
Q ss_pred EeccCCC--chhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcC-CCceeecChh
Q 021401 234 AVCPKGM--GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG-SPFTFATTLE 295 (313)
Q Consensus 234 ~vhPn~p--g~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG-~~~~~~tT~~ 295 (313)
..+|... +..+.+++. ...++.- .++++.+.++.+++.++ ...+..++++
T Consensus 150 ~~~Pe~~~~G~~~~~~~~---------~~~iv~G---~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (411)
T TIGR03026 150 AYNPEFLREGNAVHDLLN---------PDRIVGG---ETEEAGEAVAELYAPIIEDGPVLVTSIE 202 (411)
T ss_pred EECCCcCCCCChhhhhcC---------CCEEEEe---CCHHHHHHHHHHHHHhccCCCEEcCCHH
Confidence 7777432 222222221 1232332 25789999999999997 3444444443
No 93
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.00 E-value=2.4e-09 Score=102.60 Aligned_cols=150 Identities=13% Similarity=0.096 Sum_probs=90.0
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC--------Cceec--CCCcCCHHhhhccCCE
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEE--NGTLGDIYETISGSDL 181 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--------G~~~~--~~~~~~~~e~i~~ADv 181 (313)
|+|+|||+|.||.++|..|.+. |++|.++.|..+. .+...+. |.... -....+++|+++++|+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~~-~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPEF-AAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 8999999999999999999999 9998877765332 2222222 31100 0013477888999999
Q ss_pred EEEcccchhHHHHHHHHHhcCCCCcEEE-EecCch-----hhhhhhc-ccCCCCCccEEEeccCCCchhHHHHHHhcccc
Q 021401 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-----LGHLQSI-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEI 254 (313)
Q Consensus 182 IiLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~-----l~~~~~~-~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~ 254 (313)
|++++|++...+++ +.++++.+++ .+.|+. ...+.+. ......++ .+...|+.+.... +|
T Consensus 78 Vi~~v~~~~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~-~~~~gP~~a~~~~-----~~--- 144 (328)
T PRK14618 78 AVVAVPSKALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARV-AVLSGPNHAEEIA-----RF--- 144 (328)
T ss_pred EEEECchHHHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCe-EEEECccHHHHHH-----cC---
Confidence 99999999765555 5567887776 445653 2122210 00011122 3456775544321 11
Q ss_pred cCCCceEEEEeccCCCHHHHHHHHHHHHHcCC
Q 021401 255 NGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (313)
Q Consensus 255 ~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~ 286 (313)
.+...++ .. .+.+..+.++.+++..|.
T Consensus 145 --~~~~~~~-~~--~~~~~~~~v~~ll~~~~~ 171 (328)
T PRK14618 145 --LPAATVV-AS--PEPGLARRVQAAFSGPSF 171 (328)
T ss_pred --CCeEEEE-Ee--CCHHHHHHHHHHhCCCcE
Confidence 1222222 22 346788888999888774
No 94
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.94 E-value=2.1e-08 Score=99.83 Aligned_cols=163 Identities=17% Similarity=0.101 Sum_probs=100.4
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh---------------
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--------------- 175 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~--------------- 175 (313)
+++|+|||+|.||.++|..|.+. |++|+..+ .+++..+ +...|..+. ....++++
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D-~~~~~v~-~l~~g~~~~--~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVD-INQHAVD-TINRGEIHI--VEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEe-CCHHHHH-HHHCCCCCc--CCCCHHHHHHHHhhcCceeeecc
Confidence 48999999999999999999999 99876554 4444333 334443321 11122332
Q ss_pred hccCCEEEEcccc----------hhHHHHHHHHHhcCCCCcEEEEecCchh---h----hhhhcccC--CC----CCcc-
Q 021401 176 ISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGFLL---G----HLQSIGLD--FP----KNIG- 231 (313)
Q Consensus 176 i~~ADvIiLavP~----------~a~~~vi~ei~~~mk~gaiLid~~Gv~l---~----~~~~~~~~--l~----~~i~- 231 (313)
+++||+||+|+|. ..+...++.+.+++++|++|++.+.+.. . .+.+.+.. .| .+.+
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 3489999999997 3555677889999999999998765422 1 12211111 11 0112
Q ss_pred EEEecc--CCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCceeecChh
Q 021401 232 VIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLE 295 (313)
Q Consensus 232 vV~vhP--n~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~ 295 (313)
.+...| -.++....+... .+. +. .. .+++..+.++.+++.++..-+..++++
T Consensus 153 ~v~~~PE~~~~G~~~~~~~~---------~~~-vv-gG-~~~~~~~~~~~ly~~~~~~~~~~~~~~ 206 (415)
T PRK11064 153 NIAYCPERVLPGQVMVELIK---------NDR-VI-GG-MTPVCSARASELYKIFLEGECVVTNSR 206 (415)
T ss_pred EEEECCCccCCCChhhhhcC---------CCE-EE-Ee-CCHHHHHHHHHHHHHhcCCCeeeCCHH
Confidence 355677 445555433222 233 22 22 357889999999999986544444443
No 95
>PLN02858 fructose-bisphosphate aldolase
Probab=98.93 E-value=9.9e-09 Score=115.26 Aligned_cols=152 Identities=18% Similarity=0.172 Sum_probs=101.8
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~ 191 (313)
++|||||+|+||.++|++|.+. |++|.++++.. ...+...+.|... ..+..+++++||+|++++|+...
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~-~~~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~~ 393 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYK-PTLVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEVQ 393 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCee----cCCHHHHHhcCCEEEEecCChHH
Confidence 8999999999999999999999 99887776553 3344455566543 45888999999999999996555
Q ss_pred -HHHH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC---CCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021401 192 -ADNY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF---PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (313)
Q Consensus 192 -~~vi---~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l---~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (313)
.+++ ..+.+.+++|++++|++.+.....++....+ +.++.|+- .|-.-++.. -+ .|.-. +.
T Consensus 394 v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD-APVsGg~~~---A~-------~G~L~-im 461 (1378)
T PLN02858 394 AENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD-APVSGGVKR---AA-------MGTLT-IM 461 (1378)
T ss_pred HHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE-ccCCCChhh---hh-------cCCce-EE
Confidence 4566 2578889999999998876432221100011 14566654 232222221 11 23333 33
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCc
Q 021401 265 VHQDVDGRATNVALGWSVALGSPF 288 (313)
Q Consensus 265 p~~d~~~ea~e~a~~L~~alG~~~ 288 (313)
...+ ++..+.++.+++.+|.+.
T Consensus 462 vgG~--~~~~~~~~plL~~lg~~i 483 (1378)
T PLN02858 462 ASGT--DEALKSAGSVLSALSEKL 483 (1378)
T ss_pred EECC--HHHHHHHHHHHHHHhCcE
Confidence 4443 578999999999999643
No 96
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.92 E-value=5.5e-09 Score=99.53 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=66.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccc
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~ 188 (313)
.+ |+|+|||+|+||.++|+.|.+. |++|.++.|... .+++++++++|+|++++|+
T Consensus 3 ~~-m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~ 57 (308)
T PRK14619 3 QP-KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSM 57 (308)
T ss_pred CC-CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECCh
Confidence 35 8999999999999999999999 999887776531 1667889999999999999
Q ss_pred hhHHHHHHHHHhc-CCCCcEEEEec
Q 021401 189 AAQADNYEKIFSC-MKPNSILGLSH 212 (313)
Q Consensus 189 ~a~~~vi~ei~~~-mk~gaiLid~~ 212 (313)
..+.++++++.++ ++++++|++++
T Consensus 58 ~~~~~v~~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 58 KGVRPVAEQVQALNLPPETIIVTAT 82 (308)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 8777888888764 78899888755
No 97
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.90 E-value=1.6e-08 Score=96.80 Aligned_cols=149 Identities=18% Similarity=0.147 Sum_probs=103.4
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~ 191 (313)
++||+||+|+||.+++.+|.+. |+.|++++|.-++ .+.-++.|... ..++.|++++||+||.++|+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~~k-~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTKDK-CKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD 104 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcHHH-HHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence 8999999999999999999999 9999888876443 45556677764 56899999999999999998887
Q ss_pred HH-HHH---HHHhcCCCCcEE-EEecCchh---hhhhhcccCCCCCccEEEe--ccCCCchhHHHHHHhcccccCCCceE
Q 021401 192 AD-NYE---KIFSCMKPNSIL-GLSHGFLL---GHLQSIGLDFPKNIGVIAV--CPKGMGPSVRRLYVQGKEINGAGINS 261 (313)
Q Consensus 192 ~~-vi~---ei~~~mk~gaiL-id~~Gv~l---~~~~~~~~~l~~~i~vV~v--hPn~pg~~~r~lf~~G~e~~g~G~~~ 261 (313)
++ ++- -++..+++|... +|++-+.. ..+.+ ..-.++..||-. +=.-.++. + |.-.
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~--~i~~~~~~~vDAPVSGg~~~A~------~-------G~Lt 169 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAK--AISNKGGRFVDAPVSGGVKGAE------E-------GTLT 169 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHH--HHHhCCCeEEeccccCCchhhh------c-------CeEE
Confidence 65 664 466777888877 78887642 22222 122345566642 11111222 2 3333
Q ss_pred EEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021401 262 SFAVHQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 262 iitp~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
|-...| ++..+.+..+++.+|...+
T Consensus 170 -imagGd--e~~~~~~~~~~~~mGk~~~ 194 (327)
T KOG0409|consen 170 -IMAGGD--EALFEAASPVFKLMGKNVV 194 (327)
T ss_pred -EEecCc--HHHHHHHHHHHHHhcceEE
Confidence 444443 6788889999999995433
No 98
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.88 E-value=7.5e-09 Score=89.63 Aligned_cols=95 Identities=23% Similarity=0.331 Sum_probs=68.7
Q ss_pred EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee----------cCCCcCCHHhhhccCCEE
Q 021401 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE----------ENGTLGDIYETISGSDLV 182 (313)
Q Consensus 113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~----------~~~~~~~~~e~i~~ADvI 182 (313)
||+|||.|++|.++|..|.+. |++|.++.++. +..+.-.+.+... .-....++++++++||+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~-~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDE-EQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCH-HHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccH-HHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 799999999999999999999 99888777654 3222222222110 000145888999999999
Q ss_pred EEcccchhHHHHHHHHHhcCCCCcEEEE-ecCc
Q 021401 183 LLLISDAAQADNYEKIFSCMKPNSILGL-SHGF 214 (313)
Q Consensus 183 iLavP~~a~~~vi~ei~~~mk~gaiLid-~~Gv 214 (313)
++++|.+.+.++++++.++++++++|+. ..|+
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 9999999999999999999999998774 5576
No 99
>PLN02858 fructose-bisphosphate aldolase
Probab=98.88 E-value=2.5e-08 Score=112.01 Aligned_cols=151 Identities=15% Similarity=0.124 Sum_probs=103.3
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~ 191 (313)
++|||||+|+||..||++|.+. |++|.++++. .+..+...+.|... ..++.|++++||+||+++|+...
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~-~~~~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEIS-TPLMEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence 7899999999999999999999 9998777665 34445556677664 56899999999999999999887
Q ss_pred HH-HH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCC--ccEEEeccCCCchhHHHHHHhcccccCCCceEEEE
Q 021401 192 AD-NY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKN--IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (313)
Q Consensus 192 ~~-vi---~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l-~~~--i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (313)
.+ ++ +.+.+.+++|++++|++-+.....++....+ .++ +.|+- +|-.=+.. .-++| . ..+.
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lD-aPVsGg~~---~A~~G-------~-L~im 141 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVD-AYVSKGMS---DLLNG-------K-LMII 141 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEE-ccCcCCHH---HHhcC-------C-eEEE
Confidence 65 65 3688889999999998866432221100011 223 55554 33111111 11222 2 3344
Q ss_pred eccCCCHHHHHHHHHHHHHcCCC
Q 021401 265 VHQDVDGRATNVALGWSVALGSP 287 (313)
Q Consensus 265 p~~d~~~ea~e~a~~L~~alG~~ 287 (313)
...+ ++..+.++.+++.+|..
T Consensus 142 vGG~--~~~~~~~~p~l~~~g~~ 162 (1378)
T PLN02858 142 ASGR--SDAITRAQPFLSAMCQK 162 (1378)
T ss_pred EcCC--HHHHHHHHHHHHHhcCc
Confidence 4544 57889999999999954
No 100
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.87 E-value=3.1e-08 Score=96.01 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=80.6
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC---------ceecC--CCcCCHHhhhccCC
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGSD 180 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G---------~~~~~--~~~~~~~e~i~~AD 180 (313)
++|+|||.|+||.++|..|.+. | +++++.+. ++..+.-.+.+ +.... ....+.+++++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~-~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aD 79 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARR------G-PTLQWVRS-AETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCAD 79 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCC-HHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCC
Confidence 7999999999999999999988 8 45455443 23222222222 10000 01346778899999
Q ss_pred EEEEcccchhHHHHHHHHHhcCCCCcEE-EEecCchh-------hhhhhcccCCCCCccEEEeccCCCc
Q 021401 181 LVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-------GHLQSIGLDFPKNIGVIAVCPKGMG 241 (313)
Q Consensus 181 vIiLavP~~a~~~vi~ei~~~mk~gaiL-id~~Gv~l-------~~~~~~~~~l~~~i~vV~vhPn~pg 241 (313)
+|++++|.+...++++++.++++++++| +...|+.. ..+++ .++....++...|+.+.
T Consensus 80 lVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a~ 145 (341)
T PRK12439 80 VVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIAR 145 (341)
T ss_pred EEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHHH
Confidence 9999999999999999999999888754 47778753 23433 33433345677786644
No 101
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.85 E-value=8.1e-08 Score=90.18 Aligned_cols=159 Identities=17% Similarity=0.173 Sum_probs=97.8
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCC---------CcCCHHhhhccCCEE
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~---------~~~~~~e~i~~ADvI 182 (313)
|+|+|||.|.||..+|..|.+. |++|.+..| . +..+...+.|+..... ...+.+++++.+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-P-KRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-H-HHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 6899999999999999999998 998877766 3 3334444556432110 123455667899999
Q ss_pred EEcccchhHHHHHHHHHhcCCCCcEEE-EecCch-hhhhhhcccCCCCC-----ccEEEeccCCCchhHHHHHHhccccc
Q 021401 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSIGLDFPKN-----IGVIAVCPKGMGPSVRRLYVQGKEIN 255 (313)
Q Consensus 183 iLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~-l~~~~~~~~~l~~~-----i~vV~vhPn~pg~~~r~lf~~G~e~~ 255 (313)
++++|.....++++++.+.++++.+|+ ...|+. ...+.. .++++ +.++......|+... ..
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~---~~~~~~v~~g~~~~~~~~~~~g~v~---------~~ 140 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEP---YFGRERVLGGVVFISAQLNGDGVVV---------QR 140 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHH---hCCcccEEEEEEEEEEEECCCeEEE---------Ec
Confidence 999999998899999999888888765 556874 333433 34432 112223333333331 00
Q ss_pred CCCceEEEEeccCCCHHHHHHHHHHHHHcCCCceee
Q 021401 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFA 291 (313)
Q Consensus 256 g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~ 291 (313)
+.+. ..+........+..+.+.+++...|......
T Consensus 141 ~~~~-~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~ 175 (305)
T PRK12921 141 ADHR-LTFGEIPGQRSERTRAVRDALAGARLEVVLS 175 (305)
T ss_pred CCCc-EEEcCCCCCcCHHHHHHHHHHHhCCCCceec
Confidence 1222 2243333333455566667777777554333
No 102
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.83 E-value=1.3e-08 Score=96.94 Aligned_cols=115 Identities=17% Similarity=0.235 Sum_probs=81.5
Q ss_pred ccchhhhhhcCCCcccc--cccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021401 87 ANRDEFIVRGGRDLFKL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (313)
Q Consensus 87 ~~~~e~~v~~G~w~f~~--~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (313)
+.|+..-+-.|.|...+ ...+|.| ++++|||+|.||.++|+.|+.. |++|++.+|+.. ..+.+.+.|+..
T Consensus 126 a~~n~~~~Ae~ai~~al~~~~~~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~-~~~~~~~~g~~~ 197 (287)
T TIGR02853 126 AIYNSIPTAEGAIMMAIEHTDFTIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSA-DLARITEMGLIP 197 (287)
T ss_pred EEEccHhHHHHHHHHHHHhcCCCCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHCCCee
Confidence 34444434444443221 2358899 9999999999999999999999 999888877643 334455556542
Q ss_pred cCCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 165 ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 165 ~~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
....++++.++++|+||+++|...+. ++.++.|+++++|+|++..
T Consensus 198 --~~~~~l~~~l~~aDiVint~P~~ii~---~~~l~~~k~~aliIDlas~ 242 (287)
T TIGR02853 198 --FPLNKLEEKVAEIDIVINTIPALVLT---ADVLSKLPKHAVIIDLASK 242 (287)
T ss_pred --ecHHHHHHHhccCCEEEECCChHHhC---HHHHhcCCCCeEEEEeCcC
Confidence 11235678899999999999975321 3677889999999998753
No 103
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.79 E-value=1.4e-07 Score=90.83 Aligned_cols=152 Identities=14% Similarity=0.194 Sum_probs=109.9
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc----------ccHHHHHHCCceecC---------CCcCC
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN---------GTLGD 171 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~~---------~~~~~ 171 (313)
|++|+|||.|.||..+|..+... |++|.+.+.+.+ +..+...+.|...+. ....+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 58999999999999999998877 899877765521 122233333422111 00122
Q ss_pred HHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 021401 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (313)
Q Consensus 172 ~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf 248 (313)
. ..+++||+||=+++-+... +++.++-.+.+|++||- .+++..+..+.+ .....-+|++.|+--|.+-|
T Consensus 77 ~-~~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~---~~~rper~iG~HFfNP~~~m---- 148 (307)
T COG1250 77 L-AALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAE---ALKRPERFIGLHFFNPVPLM---- 148 (307)
T ss_pred h-hHhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHH---HhCCchhEEEEeccCCCCcc----
Confidence 2 2789999999999977654 38899999999999996 888888766654 22223479999997777663
Q ss_pred HhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCC
Q 021401 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (313)
Q Consensus 249 ~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~ 286 (313)
.-.=+.+...++++.++++.+++..+|.
T Consensus 149 ----------~LVEvI~g~~T~~e~~~~~~~~~~~igK 176 (307)
T COG1250 149 ----------PLVEVIRGEKTSDETVERVVEFAKKIGK 176 (307)
T ss_pred ----------eeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 1122567888999999999999999994
No 104
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.78 E-value=7.1e-09 Score=87.88 Aligned_cols=120 Identities=18% Similarity=0.092 Sum_probs=77.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
++++ ++|+|||.|.||.++++.|++. | .+|.+..++.++..+.+.+.+.........+.+++++++|+|+++
T Consensus 16 ~~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~ 88 (155)
T cd01065 16 ELKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINT 88 (155)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeC
Confidence 4667 9999999999999999999987 6 456666554333333344434210000134677789999999999
Q ss_pred ccchhH-HH--HHHHHHhcCCCCcEEEEecCchh--hhhhhcccCCCCCccEEEeccC
Q 021401 186 ISDAAQ-AD--NYEKIFSCMKPNSILGLSHGFLL--GHLQSIGLDFPKNIGVIAVCPK 238 (313)
Q Consensus 186 vP~~a~-~~--vi~ei~~~mk~gaiLid~~Gv~l--~~~~~~~~~l~~~i~vV~vhPn 238 (313)
+|+..+ .+ .+. ...++++.+++|++.... ...+. .-..+..+|..||.
T Consensus 89 ~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~---~~~~g~~~v~g~~~ 141 (155)
T cd01065 89 TPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKE---ARALGAKTIDGLEM 141 (155)
T ss_pred cCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHH---HHHCCCceeCCHHH
Confidence 999886 21 121 123689999999876532 11111 11236778888873
No 105
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.78 E-value=2.9e-08 Score=100.47 Aligned_cols=93 Identities=23% Similarity=0.273 Sum_probs=75.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
..|.| ++++|||+|.||..+|+.++.+ |++|++..+.. .....+...|+. ..+++++++++|+|+++
T Consensus 250 ~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp-~~a~~A~~~G~~-----~~~leell~~ADIVI~a 316 (476)
T PTZ00075 250 VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDP-ICALQAAMEGYQ-----VVTLEDVVETADIFVTA 316 (476)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCc-hhHHHHHhcCce-----eccHHHHHhcCCEEEEC
Confidence 47899 9999999999999999999999 99987665543 223345556775 34789999999999999
Q ss_pred ccchhHHHHHH-HHHhcCCCCcEEEEecCc
Q 021401 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 186 vP~~a~~~vi~-ei~~~mk~gaiLid~~Gv 214 (313)
+. ...+++ +.+..||||++|++++-.
T Consensus 317 tG---t~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 317 TG---NKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred CC---cccccCHHHHhccCCCcEEEEcCCC
Confidence 74 345776 889999999999987655
No 106
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.76 E-value=2.9e-08 Score=87.50 Aligned_cols=94 Identities=23% Similarity=0.295 Sum_probs=69.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
..|.| |++.|+|+|.+|..+|+.|+.. |.+|++.... +-..-+|...||. ..+++|+++++|+|+-+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~D-Pi~alqA~~dGf~-----v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEID-PIRALQAAMDGFE-----VMTLEEALRDADIFVTA 85 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SS-HHHHHHHHHTT-E-----EE-HHHHTTT-SEEEE-
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECC-hHHHHHhhhcCcE-----ecCHHHHHhhCCEEEEC
Confidence 46789 9999999999999999999999 9998877654 4445577789998 45899999999999999
Q ss_pred ccchhHHHHHH-HHHhcCCCCcEEEEecCch
Q 021401 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (313)
Q Consensus 186 vP~~a~~~vi~-ei~~~mk~gaiLid~~Gv~ 215 (313)
+-... ++. +.+..||+|++|..++.+.
T Consensus 86 TG~~~---vi~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 86 TGNKD---VITGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp SSSSS---SB-HHHHHHS-TTEEEEESSSST
T ss_pred CCCcc---ccCHHHHHHhcCCeEEeccCcCc
Confidence 88754 343 6778899999999998874
No 107
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.75 E-value=1.7e-07 Score=99.38 Aligned_cols=156 Identities=10% Similarity=0.086 Sum_probs=113.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CC
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~ 168 (313)
..|++|+|||.|.||..+|..+... |++|++.+... +..+. ..+.|...+. ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~-~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQ-KALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 4568999999999999999999998 99987776543 22221 1222221100 01
Q ss_pred cCCHHhhhccCCEEEEcccchhHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHH
Q 021401 169 LGDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (313)
Q Consensus 169 ~~~~~e~i~~ADvIiLavP~~a~~~--vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r 245 (313)
..+. +.+++||+||=++|.+...+ ++.++-+.+++++||. .++++.+..+.. .+...-+|++.|+-.|.+.+
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~~g~Hff~P~~~~- 458 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRM- 458 (715)
T ss_pred eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCCccEEEEecCCccccc-
Confidence 2344 55799999999999887653 8999999999999986 788887766665 33334589999998777763
Q ss_pred HHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021401 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
. -.=|.++..++++.++.+.++++.+|..-+
T Consensus 459 ~-------------lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv 489 (715)
T PRK11730 459 P-------------LVEVIRGEKTSDETIATVVAYASKMGKTPI 489 (715)
T ss_pred c-------------eEEeeCCCCCCHHHHHHHHHHHHHhCCceE
Confidence 1 122678889999999999999999996544
No 108
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.75 E-value=1.8e-07 Score=89.52 Aligned_cols=103 Identities=25% Similarity=0.291 Sum_probs=73.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecC--C----------CcCCHHhhhcc
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G----------TLGDIYETISG 178 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~----------~~~~~~e~i~~ 178 (313)
+|+|+|||.|.||.++|..|.+. |++|.+..|.. ..+...+.|....+ + ...+..+.++.
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA------GADVTLIGRAR--IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALAT 73 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc------CCcEEEEecHH--HHHHHHhcCceeecCCCcceecccceeEeccChhhccC
Confidence 47899999999999999999999 99887776642 22333445543110 0 01122356789
Q ss_pred CCEEEEcccchhHHHHHHHHHhcCCCCcEEEE-ecCch-hhhhhh
Q 021401 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFL-LGHLQS 221 (313)
Q Consensus 179 ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid-~~Gv~-l~~~~~ 221 (313)
+|+|++++|.....++++++.+.++++++|++ ..|+. ...++.
T Consensus 74 ~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~ 118 (341)
T PRK08229 74 ADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRA 118 (341)
T ss_pred CCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHH
Confidence 99999999999888899999999999998774 45764 334443
No 109
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.73 E-value=1.8e-07 Score=99.16 Aligned_cols=156 Identities=10% Similarity=0.084 Sum_probs=113.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CC
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~ 168 (313)
..|++|+|||.|.||..+|..+... |++|++.+... +..+. ..+.|...+. ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~-~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 383 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQ-HSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP 383 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 3568999999999999999999999 99987776542 22221 1122211000 01
Q ss_pred cCCHHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHH
Q 021401 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (313)
Q Consensus 169 ~~~~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r 245 (313)
..+. +.+++||+||=++|.+... +++.++-+.++|++||. .+++..+..+.. .....-+|++.|+-.|.+.+
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~---~~~~p~r~ig~Hff~P~~~~- 458 (714)
T TIGR02437 384 TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRM- 458 (714)
T ss_pred eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEecCCCcccC-
Confidence 2344 4579999999999988765 39999999999999986 778887777765 33334589999997777763
Q ss_pred HHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021401 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
.+ .=|.++..++++.++.+.+++..+|..-+
T Consensus 459 ~l-------------vEvv~g~~Ts~~~~~~~~~~~~~lgk~pv 489 (714)
T TIGR02437 459 PL-------------VEVIRGEKSSDETIATVVAYASKMGKTPI 489 (714)
T ss_pred ce-------------EeecCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 11 11578889999999999999999995544
No 110
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.73 E-value=4.8e-07 Score=84.67 Aligned_cols=96 Identities=19% Similarity=0.246 Sum_probs=71.4
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee-cC------CCcCCHHhhhccCCEEEE
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-EN------GTLGDIYETISGSDLVLL 184 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~-~~------~~~~~~~e~i~~ADvIiL 184 (313)
|+|+|||.|.||..+|..|.+. |++|.+..+.. +..+...+.|+.. ++ ....+..++ +.+|+|++
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRG-AHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCh-HHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence 5899999999999999999998 99887777643 3334444456521 00 012344554 89999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEE-EecCch
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~ 215 (313)
++|.....++++++.+.+.++++|+ ...|+.
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~ 104 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVG 104 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 9999998889999999998886554 667875
No 111
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.72 E-value=1.7e-07 Score=99.70 Aligned_cols=155 Identities=11% Similarity=0.090 Sum_probs=112.5
Q ss_pred CCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-----------HHHCCceecC---------CCc
Q 021401 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTL 169 (313)
Q Consensus 110 GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~ 169 (313)
.|++|+|||.|.||..+|..+... |++|++.+... +..+. ..+.|...+. ...
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~-~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~ 406 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATP-AGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT 406 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe
Confidence 458999999999999999999998 99987765442 22211 1222211000 012
Q ss_pred CCHHhhhccCCEEEEcccchhHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHH
Q 021401 170 GDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR 246 (313)
Q Consensus 170 ~~~~e~i~~ADvIiLavP~~a~~~--vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~ 246 (313)
.+. +.+++||+||=++|.+...+ ++.++-+.++|++||. .+++..+..+.. .....-+|++.|+-.|.+.+ .
T Consensus 407 ~~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~ig~Hff~P~~~m-~ 481 (737)
T TIGR02441 407 LDY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA---VSSRPEKVIGMHYFSPVDKM-Q 481 (737)
T ss_pred CCH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCccceEEEeccCCcccC-c
Confidence 344 46799999999999887654 8999999999999986 788888777765 23334589999997777763 1
Q ss_pred HHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021401 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
-.=+.++..++++.++.+.++++.+|..-+
T Consensus 482 -------------LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv 511 (737)
T TIGR02441 482 -------------LLEIITHDGTSKDTLASAVAVGLKQGKVVI 511 (737)
T ss_pred -------------eEEEeCCCCCCHHHHHHHHHHHHHCCCeEE
Confidence 122677889999999999999999996543
No 112
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.71 E-value=2.6e-07 Score=97.73 Aligned_cols=155 Identities=12% Similarity=0.120 Sum_probs=111.1
Q ss_pred CCCEEEEEcccchHHHHHHHHH-hchhhhcCCcEEEEEecCCcccHHHH-----------HHCCceecC---------CC
Q 021401 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (313)
Q Consensus 110 GikkIgIIG~G~mG~AlA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~---------~~ 168 (313)
.|++|+|||.|.||..+|..+. .. |++|++.+... +..+.+ .+.|...+. ..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 375 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINP-QGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG 375 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence 4589999999999999999876 57 99987766542 222221 122211000 01
Q ss_pred cCCHHhhhccCCEEEEcccchhHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHH
Q 021401 169 LGDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (313)
Q Consensus 169 ~~~~~e~i~~ADvIiLavP~~a~~~--vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r 245 (313)
..+. +.+++||+||=++|.+...+ ++.++-+.+++++||. .+++..+..+.+ .+...-+|++.|+-.|.+.+
T Consensus 376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~~g~HffnP~~~~- 450 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA---AASRPENVIGLHYFSPVEKM- 450 (699)
T ss_pred eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---hcCCcccEEEEecCCccccC-
Confidence 2344 56899999999999887643 8999999999999986 778887777765 22334589999997777653
Q ss_pred HHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021401 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
.-.=|.++..++++.++.+.++++.+|..-+
T Consensus 451 -------------~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv 481 (699)
T TIGR02440 451 -------------PLVEVIPHAGTSEQTIATTVALAKKQGKTPI 481 (699)
T ss_pred -------------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 1122677888999999999999999996544
No 113
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.68 E-value=4.5e-07 Score=96.08 Aligned_cols=155 Identities=12% Similarity=0.141 Sum_probs=112.5
Q ss_pred CCCEEEEEcccchHHHHHHHHH-hchhhhcCCcEEEEEecCCcccHHHH-----------HHCCceecC---------CC
Q 021401 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (313)
Q Consensus 110 GikkIgIIG~G~mG~AlA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~---------~~ 168 (313)
.|++|+|||.|.||..+|..+. .. |++|++.+.. ++..+.+ .+.|...+. ..
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~-~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 380 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDIN-PQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG 380 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE
Confidence 4689999999999999999887 77 9998776654 2222221 122211000 01
Q ss_pred cCCHHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHH
Q 021401 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (313)
Q Consensus 169 ~~~~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r 245 (313)
..+. +.+++||+||=++|.+... +++.++-++++|++||. .+++..+..+.+ .+...-+|++.|+-.|.+.+
T Consensus 381 ~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~Hff~P~~~~- 455 (708)
T PRK11154 381 TTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA---AAARPEQVIGLHYFSPVEKM- 455 (708)
T ss_pred eCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hcCcccceEEEecCCccccC-
Confidence 2344 5679999999999988764 38999999999999986 778887777765 23334589999997777653
Q ss_pred HHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021401 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
.-.=|.++..++++.++.+.++++.+|..-+
T Consensus 456 -------------~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv 486 (708)
T PRK11154 456 -------------PLVEVIPHAKTSAETIATTVALAKKQGKTPI 486 (708)
T ss_pred -------------ceEEEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 1122678899999999999999999997544
No 114
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.64 E-value=4.7e-07 Score=86.63 Aligned_cols=96 Identities=23% Similarity=0.298 Sum_probs=68.8
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC--Cce------ec-C-CCcCCHHhhh-ccCC
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EE-N-GTLGDIYETI-SGSD 180 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~------~~-~-~~~~~~~e~i-~~AD 180 (313)
|+|+|||.|.||.++|..|.+. |.+|.+..|+. +..+.-.+. +.. .. + ....+.++.+ ..+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~-~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D 73 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNH-TTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT 73 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCH-HHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence 5799999999999999999999 99887666643 222222211 110 00 0 0123556666 5899
Q ss_pred EEEEcccchhHHHHHHHHHh-cCCCCc-EEEEecCc
Q 021401 181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGF 214 (313)
Q Consensus 181 vIiLavP~~a~~~vi~ei~~-~mk~ga-iLid~~Gv 214 (313)
+||+++|++...++++++.+ +++++. +|+...|+
T Consensus 74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 99999999999999999998 888776 45577787
No 115
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.61 E-value=8e-07 Score=88.90 Aligned_cols=92 Identities=23% Similarity=0.274 Sum_probs=74.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav 186 (313)
.+.| ++++|+|+|.+|..+++.++.. |.+|++.. .++.....|.+.|+. ..+.+++++++|+||.++
T Consensus 199 ~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d-~d~~R~~~A~~~G~~-----~~~~~e~v~~aDVVI~at 265 (413)
T cd00401 199 MIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTE-VDPICALQAAMEGYE-----VMTMEEAVKEGDIFVTTT 265 (413)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEE-CChhhHHHHHhcCCE-----EccHHHHHcCCCEEEECC
Confidence 4789 9999999999999999999999 99877654 444556788888985 236678899999999987
Q ss_pred cchhHHHHHH-HHHhcCCCCcEEEEecCc
Q 021401 187 SDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 187 P~~a~~~vi~-ei~~~mk~gaiLid~~Gv 214 (313)
... .+++ +.+..||+|.+|+.++.+
T Consensus 266 G~~---~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 266 GNK---DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CCH---HHHHHHHHhcCCCCcEEEEeCCC
Confidence 643 4566 568899999999877654
No 116
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.60 E-value=6.7e-07 Score=83.63 Aligned_cols=146 Identities=21% Similarity=0.199 Sum_probs=108.3
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhh---ccCCEEEEcccc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI---SGSDLVLLLISD 188 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i---~~ADvIiLavP~ 188 (313)
|+||.||+|.||..+.++|.+. |+++ ++++.++...+.+...|... ..+++|++ ...-+|-|.+|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~------ghdv-V~yD~n~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG------GHDV-VGYDVNQTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC------CCeE-EEEcCCHHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence 6899999999999999999999 9985 67777788888888899664 44666644 567899999998
Q ss_pred hhHH-HHHHHHHhcCCCCcEEEEecCch----hhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEE
Q 021401 189 AAQA-DNYEKIFSCMKPNSILGLSHGFL----LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (313)
Q Consensus 189 ~a~~-~vi~ei~~~mk~gaiLid~~Gv~----l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (313)
..++ ++++++.+.|.+|.+|||-+-.. +...+. ...++++|+-+=-++=. .|.-..+.+
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~---l~~kgi~flD~GTSGG~-------------~G~~~G~~l 133 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKL---LAEKGIHFLDVGTSGGV-------------WGAERGYCL 133 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHH---HHhcCCeEEeccCCCCc-------------hhhhcCceE
Confidence 8665 49999999999999999977542 323222 34568999875443211 111223446
Q ss_pred EeccCCCHHHHHHHHHHHHHcCC
Q 021401 264 AVHQDVDGRATNVALGWSVALGS 286 (313)
Q Consensus 264 tp~~d~~~ea~e~a~~L~~alG~ 286 (313)
.+..+ +++++.++-+|+++--
T Consensus 134 MiGG~--~~a~~~~~pif~~lA~ 154 (300)
T COG1023 134 MIGGD--EEAVERLEPIFKALAP 154 (300)
T ss_pred EecCc--HHHHHHHHHHHHhhCc
Confidence 66664 7999999999998753
No 117
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.57 E-value=2.8e-06 Score=81.10 Aligned_cols=157 Identities=20% Similarity=0.179 Sum_probs=98.2
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec--CCC-------cCCHHhhhccCCEE
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV 182 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~~-------~~~~~e~i~~ADvI 182 (313)
|+|+|||.|.||..+|..|.+. |++|.+..|... +.-.+.|+... ++. ..+..+.+..+|+|
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSDY---EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCH---HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 7999999999999999999999 999888877532 23334554321 010 01222346789999
Q ss_pred EEcccchhHHHHHHHHHhcCCCCcEEE-EecCchh-hhhhhcccCCCCCccEE------EeccCCCchhHHHHHHhcccc
Q 021401 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSIGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEI 254 (313)
Q Consensus 183 iLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l-~~~~~~~~~l~~~i~vV------~vhPn~pg~~~r~lf~~G~e~ 254 (313)
||++|-.+..++++.+.+.++++.+|+ ..-|+.. ..+.. .+|+. +++ +.....|+... .
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~---~~~~~-~v~~g~~~~~a~~~~pg~v~---------~ 143 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE---ILPAE-HLLGGLCFICSNRVGPGVIH---------H 143 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEeeeEeEecCCCeEEE---------E
Confidence 999999888888999999898887665 5567743 33433 34443 333 23344444331 1
Q ss_pred cCCCceEEEEeccCCC-----HHHHHHHHHHHHHcCCCceee
Q 021401 255 NGAGINSSFAVHQDVD-----GRATNVALGWSVALGSPFTFA 291 (313)
Q Consensus 255 ~g~G~~~iitp~~d~~-----~ea~e~a~~L~~alG~~~~~~ 291 (313)
.|.|... |.+....+ .+.++.+.++++..|......
T Consensus 144 ~~~g~~~-iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~ 184 (313)
T PRK06249 144 LAYGRVN-LGYHSGPAADDGITARVEEGAALFRAAGIDSQAM 184 (313)
T ss_pred CCCCcEE-EecCCCCcccchHHHHHHHHHHHHHhCCCCceeC
Confidence 2234333 44433222 456666778888888664443
No 118
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.52 E-value=6.4e-07 Score=89.37 Aligned_cols=92 Identities=23% Similarity=0.233 Sum_probs=74.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav 186 (313)
.+.| ++++|||+|.+|..+|+.++.. |++|++..+.. .....+...|+. ..+++++++++|+||.++
T Consensus 192 ~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp-~r~~~A~~~G~~-----v~~leeal~~aDVVItaT 258 (406)
T TIGR00936 192 LIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDP-IRALEAAMDGFR-----VMTMEEAAKIGDIFITAT 258 (406)
T ss_pred CCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCCh-hhHHHHHhcCCE-----eCCHHHHHhcCCEEEECC
Confidence 4789 9999999999999999999999 99987765443 334566677875 346788999999999887
Q ss_pred cchhHHHHHH-HHHhcCCCCcEEEEecCc
Q 021401 187 SDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 187 P~~a~~~vi~-ei~~~mk~gaiLid~~Gv 214 (313)
.. ..+++ +.+..||+|++|+.++.+
T Consensus 259 G~---~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 259 GN---KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred CC---HHHHHHHHHhcCCCCcEEEEECCC
Confidence 63 45676 688999999999987764
No 119
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.51 E-value=5.6e-07 Score=85.98 Aligned_cols=95 Identities=22% Similarity=0.349 Sum_probs=73.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
..+.| ++++|||+|.+|..+++.|+.. |.+|.+..++. ...+.+...|+... ...++.+.++++|+||.+
T Consensus 148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~-~~~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKS-AHLARITEMGLSPF--HLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCH-HHHHHHHHcCCeee--cHHHHHHHhCCCCEEEEC
Confidence 46789 9999999999999999999999 99887776663 33556667776521 123567889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021401 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~mk~gaiLid~~G 213 (313)
+|+.. +-++.++.|+++++|+|++.
T Consensus 218 ~p~~~---i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 218 IPALV---LTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred CChhh---hhHHHHHcCCCCcEEEEEcc
Confidence 98632 22467788999999998764
No 120
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.50 E-value=2.9e-06 Score=85.05 Aligned_cols=94 Identities=16% Similarity=0.208 Sum_probs=63.2
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee--c----------CCCcCCHHhhhccC
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--E----------NGTLGDIYETISGS 179 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~----------~~~~~~~~e~i~~A 179 (313)
|+|||||+|.||..+|.+|. . +++|+ +++.++...+... .|... | .....+..+.+++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la-~------~~~V~-g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFG-K------SRQVV-GFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHh-c------CCEEE-EEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence 89999999999999999964 3 66764 5555444443332 44320 0 00123444678999
Q ss_pred CEEEEcccchh-------HHHH---HHHHHhcCCCCcEEEEecCc
Q 021401 180 DLVLLLISDAA-------QADN---YEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 180 DvIiLavP~~a-------~~~v---i~ei~~~mk~gaiLid~~Gv 214 (313)
|+||+|+|... ...+ .+.+.+++++|++|++.+-+
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv 122 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTV 122 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 99999999551 1233 34788999999999987654
No 121
>PLN02494 adenosylhomocysteinase
Probab=98.48 E-value=8e-07 Score=90.05 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=72.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav 186 (313)
.+.| ++++|||+|.+|..+|+.++.+ |++|++..+. +.....+...|+.. .+++++++++|+|+.++
T Consensus 251 ~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~d-p~r~~eA~~~G~~v-----v~leEal~~ADVVI~tT 317 (477)
T PLN02494 251 MIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVTEID-PICALQALMEGYQV-----LTLEDVVSEADIFVTTT 317 (477)
T ss_pred ccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-chhhHHHHhcCCee-----ccHHHHHhhCCEEEECC
Confidence 4789 9999999999999999999999 9987765544 33334667778762 37889999999999866
Q ss_pred cchhHHHHH-HHHHhcCCCCcEEEEecCc
Q 021401 187 SDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 187 P~~a~~~vi-~ei~~~mk~gaiLid~~Gv 214 (313)
... .++ .+.++.||+|++|+.++.+
T Consensus 318 Gt~---~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 318 GNK---DIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred CCc---cchHHHHHhcCCCCCEEEEcCCC
Confidence 543 444 5788999999999987654
No 122
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.46 E-value=8.7e-07 Score=88.93 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav 186 (313)
.+.| ++++|||+|.+|..+|+.++.. |.+|++..+...+ ...+...|+. ..+++++++++|+||.++
T Consensus 209 ~l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 209 LIAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTAT 275 (425)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECC
Confidence 4789 9999999999999999999999 9998776654333 3455566775 347889999999999987
Q ss_pred cchhHHHHHH-HHHhcCCCCcEEEEecCch
Q 021401 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (313)
Q Consensus 187 P~~a~~~vi~-ei~~~mk~gaiLid~~Gv~ 215 (313)
.. .++++ +.+..||+|++++.++.+.
T Consensus 276 G~---~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 GN---KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CC---HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 54 34676 7889999999999887653
No 123
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.41 E-value=2.3e-06 Score=86.66 Aligned_cols=139 Identities=15% Similarity=0.080 Sum_probs=95.7
Q ss_pred hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhhcc---CCEEEEcccchhHHH-
Q 021401 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQAD- 193 (313)
Q Consensus 122 mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~e~i~~---ADvIiLavP~~a~~~- 193 (313)
||..||++|.+. |++|.+++|..++..+...+. |++. ..+++|+++. +|+|++++|....++
T Consensus 1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 899999999999 999988877655444433322 3543 5688888874 899999999987765
Q ss_pred HHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCC
Q 021401 194 NYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (313)
Q Consensus 194 vi~ei~~~mk~gaiLid~~Gv~---l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~ 270 (313)
+++.+.+.|.+|.+|+|.+-.. ...... ..-.+++.||..-=.+ +.. .=+ .|. + |.+..+
T Consensus 71 Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~--~l~~~Gi~fvdapVSG-G~~---gA~-------~G~-s-iM~GG~-- 133 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSNYKDTIRREK--ELAEKGIHFIGMGVSG-GEE---GAL-------HGP-S-IMPGGQ-- 133 (459)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHH--HHHhcCCeEEecCCCC-CHH---HHh-------cCC-E-EEEeCC--
Confidence 8899999999999999987432 111111 1213467777532222 111 111 243 4 667776
Q ss_pred HHHHHHHHHHHHHcCCC
Q 021401 271 GRATNVALGWSVALGSP 287 (313)
Q Consensus 271 ~ea~e~a~~L~~alG~~ 287 (313)
+++.+.++-+++.+|.+
T Consensus 134 ~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 134 KEAYELVAPILEKIAAK 150 (459)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 78999999999999964
No 124
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.40 E-value=1.2e-06 Score=86.33 Aligned_cols=98 Identities=18% Similarity=0.280 Sum_probs=70.6
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCC-------cEEEEEecCCcc---cHHHHHH-C--------Cceec-C-CCcC
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR---SFAEARA-A--------GFTEE-N-GTLG 170 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G-------~~Vivg~r~~~~---s~~~A~~-~--------G~~~~-~-~~~~ 170 (313)
++|+|||.|++|.++|..|.+. | ++|.++.|+..- ....... . |+... + ....
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n------~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~ts 85 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGEN------TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVS 85 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEec
Confidence 7999999999999999999887 6 677777665421 1111111 1 11100 0 0135
Q ss_pred CHHhhhccCCEEEEcccchhHHHHHHHHHh--cCCCCcEEE-EecCch
Q 021401 171 DIYETISGSDLVLLLISDAAQADNYEKIFS--CMKPNSILG-LSHGFL 215 (313)
Q Consensus 171 ~~~e~i~~ADvIiLavP~~a~~~vi~ei~~--~mk~gaiLi-d~~Gv~ 215 (313)
++++++++||+|++++|++...++++++.+ +++++++++ .+.|+.
T Consensus 86 dl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 86 DLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred CHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcc
Confidence 778899999999999999999999999998 888887554 777874
No 125
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.40 E-value=1.8e-06 Score=84.39 Aligned_cols=98 Identities=19% Similarity=0.299 Sum_probs=71.0
Q ss_pred EEEEEcccchHHHHHHHHHhchhhhcCC--------cEEEEEecCC---cccHHHHHH---------CCceecC--CCcC
Q 021401 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD--------IVVKVGLRKG---SRSFAEARA---------AGFTEEN--GTLG 170 (313)
Q Consensus 113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G--------~~Vivg~r~~---~~s~~~A~~---------~G~~~~~--~~~~ 170 (313)
+|+|||.|+.|.++|..|.+. | ++|.++.+.. .+....... .|+...+ ....
T Consensus 1 kI~VIGaG~wGtALA~~la~n------g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~ 74 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN------ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP 74 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC
Confidence 589999999999999999887 7 7888776631 111111111 1221000 0135
Q ss_pred CHHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEE-EecCchh
Q 021401 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL 216 (313)
Q Consensus 171 ~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l 216 (313)
++++++++||+|++++|++.+.++++++.++++++++++ .+.|+..
T Consensus 75 dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~ 121 (342)
T TIGR03376 75 DLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEV 121 (342)
T ss_pred CHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCccc
Confidence 788999999999999999999999999999999888654 6777743
No 126
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.37 E-value=4.7e-06 Score=81.01 Aligned_cols=148 Identities=21% Similarity=0.278 Sum_probs=95.3
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH--------CCceec--CCCcCCHHhhhccCCE
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------AGFTEE--NGTLGDIYETISGSDL 181 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~--------~G~~~~--~~~~~~~~e~i~~ADv 181 (313)
++|+|||.|+-|.++|+.|.+. |++|.++.|+.+ ..+.-.+ .|+... -....|+++++++||+
T Consensus 2 ~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~-~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~ 74 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEE-IVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADI 74 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHH-HHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCE
Confidence 7999999999999999999999 998887776422 1111100 021110 0124589999999999
Q ss_pred EEEcccchhHHHHHHHHHhcCCCCcEEE-EecCch------h-hhhhhcccCCCCCccEEEeccCCCchhHHHHHHhccc
Q 021401 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL------L-GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (313)
Q Consensus 182 IiLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~------l-~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e 253 (313)
|++++|-+.+.++++++.++++++++++ .+-|+. + ..+++ .+|.+.-.+-+=||. .+.-.+
T Consensus 75 iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~~~vLSGPs~-----A~EVa~--- 143 (329)
T COG0240 75 IVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNPIAVLSGPSF-----AKEVAQ--- 143 (329)
T ss_pred EEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCeEEEEECccH-----HHHHhc---
Confidence 9999999999999999988999998876 556762 2 33333 445443334444533 222222
Q ss_pred ccCCCceEEEEeccCCCHHHHHHHHHHHH
Q 021401 254 INGAGINSSFAVHQDVDGRATNVALGWSV 282 (313)
Q Consensus 254 ~~g~G~~~iitp~~d~~~ea~e~a~~L~~ 282 (313)
|.++.++.... +.+..+.+..+|.
T Consensus 144 ----g~pta~~vas~-d~~~a~~v~~~f~ 167 (329)
T COG0240 144 ----GLPTAVVVASN-DQEAAEKVQALFS 167 (329)
T ss_pred ----CCCcEEEEecC-CHHHHHHHHHHhC
Confidence 45665666543 3455555555444
No 127
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.37 E-value=1.1e-06 Score=84.46 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=62.0
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|.| |+|+|||.| .||..+|..|.+. |..|.+..++. .++.+++++||+||+
T Consensus 155 i~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIs 208 (301)
T PRK14194 155 GDLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVA 208 (301)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEE
Confidence 48999 999999996 9999999999999 99887765432 257789999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
+++.... +++. .+|+|++|+|++
T Consensus 209 avg~~~~---v~~~--~ik~GaiVIDvg 231 (301)
T PRK14194 209 AVGRPRL---IDAD--WLKPGAVVIDVG 231 (301)
T ss_pred ecCChhc---ccHh--hccCCcEEEEec
Confidence 9997643 3321 289999999985
No 128
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.35 E-value=1.3e-05 Score=71.85 Aligned_cols=95 Identities=22% Similarity=0.319 Sum_probs=59.7
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee--cC---------------CCcCCHHh
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--EN---------------GTLGDIYE 174 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~~---------------~~~~~~~e 174 (313)
|+|+|||+|-+|..+|..|.+. |++| ++.+.+++..+. ...|... |. ....+..+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V-~g~D~~~~~v~~-l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQV-IGVDIDEEKVEA-LNNGELPIYEPGLDELLKENVSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEE-EEE-S-HHHHHH-HHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEE-EEEeCChHHHHH-Hhhccccccccchhhhhccccccccchhhhhhhh
Confidence 7999999999999999999999 9986 566655443322 2233110 00 01346778
Q ss_pred hhccCCEEEEcccch----------hHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 175 TISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 175 ~i~~ADvIiLavP~~----------a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
++++||++++|+|.. .....++.+.++++++++|+.-+-+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 899999999999722 2345677899999999998865533
No 129
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.33 E-value=7.4e-06 Score=81.25 Aligned_cols=92 Identities=12% Similarity=0.104 Sum_probs=61.8
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH----------------CCceecCCCcCCHHhh
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET 175 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----------------~G~~~~~~~~~~~~e~ 175 (313)
|+|+|||+|.||..+|..+ +. |++|+.. +.+++..+...+ .+... ....+..++
T Consensus 1 mkI~VIGlGyvGl~~A~~l-A~------G~~Vigv-D~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l--~~t~~~~~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLI-AQ------NHEVVAL-DILPSRVAMLNDRISPIVDKEIQQFLQSDKIHF--NATLDKNEA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHH-Hh------CCcEEEE-ECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcE--EEecchhhh
Confidence 5899999999999999655 46 8887544 444443333322 11110 012245678
Q ss_pred hccCCEEEEcccch-----------hHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 176 ISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 176 i~~ADvIiLavP~~-----------a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
+++||+|++++|.. ...++++.+.. +++|++|++.+-+
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv 119 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTV 119 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeec
Confidence 89999999999955 33456677777 6999999876655
No 130
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.31 E-value=3.7e-06 Score=79.45 Aligned_cols=92 Identities=15% Similarity=0.166 Sum_probs=63.7
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a 190 (313)
++|||||+|.||..+++.|.+.. .++++....+++.+ ..+.+.+.|... ...+.+++++++|+|++++|+..
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence 79999999999999999997620 16676544454433 334444555321 24589999999999999999998
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecC
Q 021401 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (313)
Q Consensus 191 ~~~vi~ei~~~mk~ga-iLid~~G 213 (313)
+.++..+.+. .|+ +++...|
T Consensus 80 h~e~~~~aL~---aGk~Vi~~s~g 100 (271)
T PRK13302 80 LRAIVEPVLA---AGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHHH---cCCcEEEecch
Confidence 8887766553 454 4444444
No 131
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.31 E-value=8.5e-06 Score=82.86 Aligned_cols=169 Identities=15% Similarity=0.080 Sum_probs=95.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee--c-----------C---CCcCCHHh
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--E-----------N---GTLGDIYE 174 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~-----------~---~~~~~~~e 174 (313)
+|+|+|||+|.+|..+|..|.+. |.|++|+ +.+.+++..+.- +.|... + + ....+..+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~-gvD~~~~~v~~l-~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~ 74 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK----CPDIEVV-VVDISVPRIDAW-NSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEK 74 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCeEE-EEECCHHHHHHH-HcCCCccCCCCHHHHHHHhhcCCEEEEcCHHH
Confidence 48999999999999999999876 1136664 445444333221 111100 0 0 01235677
Q ss_pred hhccCCEEEEccc-ch--------------hHHHHHHHHHhcCCCCcEEEEec----CchhhhhhhcccCCCCCcc-EEE
Q 021401 175 TISGSDLVLLLIS-DA--------------AQADNYEKIFSCMKPNSILGLSH----GFLLGHLQSIGLDFPKNIG-VIA 234 (313)
Q Consensus 175 ~i~~ADvIiLavP-~~--------------a~~~vi~ei~~~mk~gaiLid~~----Gv~l~~~~~~~~~l~~~i~-vV~ 234 (313)
++++||+||+|+| |. .+...++++.++++++++|+.-+ |+. ..+...-..-..+.+ .|.
T Consensus 75 ~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt-~~~~~~l~~~~~g~~f~v~ 153 (473)
T PLN02353 75 HVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTA-EAIEKILTHNSKGINFQIL 153 (473)
T ss_pred HHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChH-HHHHHHHHhhCCCCCeEEE
Confidence 8999999999986 22 23346678999999999887544 332 111110000011233 466
Q ss_pred ecc--CCCchhHHHHHHhcccccCCCceEEE-Eec-cCCCHHHHHHHHHHHHHcC-CCceeecChh
Q 021401 235 VCP--KGMGPSVRRLYVQGKEINGAGINSSF-AVH-QDVDGRATNVALGWSVALG-SPFTFATTLE 295 (313)
Q Consensus 235 vhP--n~pg~~~r~lf~~G~e~~g~G~~~ii-tp~-~d~~~ea~e~a~~L~~alG-~~~~~~tT~~ 295 (313)
..| ..||..+++++. ..-++ .-. .+..+++.+.++++...+- ...+..++++
T Consensus 154 ~~PErl~~G~a~~d~~~---------p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~ 210 (473)
T PLN02353 154 SNPEFLAEGTAIEDLFK---------PDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLW 210 (473)
T ss_pred ECCCccCCCCcccccCC---------CCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHH
Confidence 677 345555544443 34433 222 2222567888888888774 2345556665
No 132
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.31 E-value=4.4e-06 Score=78.48 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=58.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHH-HHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~ 189 (313)
+++|||||+|.||..+++.+.+. +.+++++...+++.+..+ .+...|... ..++++++.++|+|++++|+.
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChH
Confidence 47999999999999999999875 013555544555443332 333344432 458889889999999999999
Q ss_pred hHHHHHHHHHh
Q 021401 190 AQADNYEKIFS 200 (313)
Q Consensus 190 a~~~vi~ei~~ 200 (313)
.+.++..+.+.
T Consensus 73 ~~~~~~~~al~ 83 (265)
T PRK13304 73 AVEEVVPKSLE 83 (265)
T ss_pred HHHHHHHHHHH
Confidence 88887776654
No 133
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=1.1e-05 Score=80.08 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=105.0
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC----ceecCCCcCCHHh---hhccCCEEEE
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYE---TISGSDLVLL 184 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G----~~~~~~~~~~~~e---~i~~ADvIiL 184 (313)
..||+||+|.||..+|+|+.+. |+.|.+++|..+++.+.-++.+ ++. ..+++| .++.---|+|
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~----~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP----AYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc----cCcHHHHHHHhcCCceEEE
Confidence 5799999999999999999999 9999999998777665544443 221 345665 5577888999
Q ss_pred cccchh-HHHHHHHHHhcCCCCcEEEEecCc----hhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCc
Q 021401 185 LISDAA-QADNYEKIFSCMKPNSILGLSHGF----LLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (313)
Q Consensus 185 avP~~a-~~~vi~ei~~~mk~gaiLid~~Gv----~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~ 259 (313)
.+.-.. +..++++++++|.+|.||+|-+-. ++...++ .-.+++.||+.==++ |.|.-=.|
T Consensus 74 MVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~e---L~~~Gi~FvG~GVSG-----------GEeGA~~G- 138 (473)
T COG0362 74 MVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKE---LSEKGILFVGMGVSG-----------GEEGARHG- 138 (473)
T ss_pred EEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHH---HHhcCCeEEeccccc-----------cccccccC-
Confidence 988754 445999999999999999998754 2333332 335688999753322 11000011
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021401 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (313)
Q Consensus 260 ~~iitp~~d~~~ea~e~a~~L~~alG~~ 287 (313)
+. |.|..+ .++.+.+.-+++++-++
T Consensus 139 PS-iMpGG~--~eay~~v~pil~~IaAk 163 (473)
T COG0362 139 PS-IMPGGQ--KEAYELVAPILTKIAAK 163 (473)
T ss_pred CC-cCCCCC--HHHHHHHHHHHHHHHhh
Confidence 22 567665 78999999999988754
No 134
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.18 E-value=6.9e-06 Score=78.81 Aligned_cols=97 Identities=19% Similarity=0.227 Sum_probs=69.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
.+.| ++|+|||.|.||..+++.|+.. |. +|++.++..++..+.+.+.|.... ...+..+.+.++|+||.+
T Consensus 175 ~l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~a 245 (311)
T cd05213 175 NLKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISA 245 (311)
T ss_pred CccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEEC
Confidence 3789 9999999999999999999986 54 666676654445566777665321 123466788999999999
Q ss_pred ccchhHHHHHHHHHhcC-CCCcEEEEec
Q 021401 186 ISDAAQADNYEKIFSCM-KPNSILGLSH 212 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~m-k~gaiLid~~ 212 (313)
++.....+++++..... +++.+++|.+
T Consensus 246 t~~~~~~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 246 TGAPHYAKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence 99776645555544332 3567788876
No 135
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.17 E-value=6.1e-05 Score=72.67 Aligned_cols=145 Identities=12% Similarity=0.050 Sum_probs=100.2
Q ss_pred hHHHHHHHHHhchhhhcCCcEEEEEecCCcc------cH-----------HHHHHCCceecC---------CCcC--CHH
Q 021401 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------SF-----------AEARAAGFTEEN---------GTLG--DIY 173 (313)
Q Consensus 122 mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~------s~-----------~~A~~~G~~~~~---------~~~~--~~~ 173 (313)
||..+|..+... |++|++.+...+. .. +.+.+.|...+. .... +..
T Consensus 1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence 789999999888 9998877765421 11 112233322100 0011 255
Q ss_pred hhhccCCEEEEcccchhHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHh
Q 021401 174 ETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (313)
Q Consensus 174 e~i~~ADvIiLavP~~a~~~--vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~ 250 (313)
+++++||+||-++|.+...+ ++.++.+.++|++||. .+++..+..+.. ..+..-++++.|+--|.+.+
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~---~~~~p~r~~g~Hf~~Pp~~~------ 145 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR---HVAHPERFLNAHWLNPAYLM------ 145 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh---hcCCcccEEEEecCCccccC------
Confidence 78999999999999888754 7889999999999986 566666666654 22333479999996666553
Q ss_pred cccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021401 251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 251 G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
.-.=+.+...++++.++.+..+++.+|..-+
T Consensus 146 --------~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v 176 (314)
T PRK08269 146 --------PLVEVSPSDATDPAVVDRLAALLERIGKVPV 176 (314)
T ss_pred --------ceEEEeCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 1122567778899999999999999996533
No 136
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.17 E-value=7.5e-06 Score=67.46 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=60.9
Q ss_pred EEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEec-CCcccHHHHHHCC-ceecCCCcCCHHhh-hccCCEEEEcccc
Q 021401 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAG-FTEENGTLGDIYET-ISGSDLVLLLISD 188 (313)
Q Consensus 113 kIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r-~~~~s~~~A~~~G-~~~~~~~~~~~~e~-i~~ADvIiLavP~ 188 (313)
+|+||| .|.+|..++..+.+. .++++..... +.+.....+...+ +........+.++. ..++|+|++++|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~ 75 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH 75 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence 589999 599999999998884 1555433322 2111111122222 11000000111111 2589999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEecCch
Q 021401 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (313)
Q Consensus 189 ~a~~~vi~ei~~~mk~gaiLid~~Gv~ 215 (313)
..+.+++..+...+++|++|+|++|..
T Consensus 76 ~~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 76 GVSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred HHHHHHHHHHHhhhcCCCEEEECCccc
Confidence 999998876667789999999999873
No 137
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.17 E-value=6e-06 Score=79.35 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=61.7
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
+++| ++|+||| .|.||..+|..|.+. |+.|.++..+. .++++++++||+|+.+
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-------------------~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-------------------RDLPAVCRRADILVAA 208 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence 7899 9999999 999999999999998 99887764221 1457889999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021401 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~mk~gaiLid~~G 213 (313)
++.... +++. ++++|++|+|++-
T Consensus 209 vg~~~~---v~~~--~lk~GavVIDvGi 231 (296)
T PRK14188 209 VGRPEM---VKGD--WIKPGATVIDVGI 231 (296)
T ss_pred cCChhh---cchh--eecCCCEEEEcCC
Confidence 998653 3322 2899999999863
No 138
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.10 E-value=2.3e-05 Score=63.49 Aligned_cols=82 Identities=23% Similarity=0.278 Sum_probs=62.5
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~ 188 (313)
.+|||||+|.+|......+++. ..+.++....+++++.. ..+.+.|+.. ..+.+++++ +.|+|++++|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~----~~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS----SPDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSG
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCC
Confidence 4799999999999999888876 12456654555554443 3456678763 678999998 79999999999
Q ss_pred hhHHHHHHHHHhc
Q 021401 189 AAQADNYEKIFSC 201 (313)
Q Consensus 189 ~a~~~vi~ei~~~ 201 (313)
..+.+++.+.+..
T Consensus 73 ~~h~~~~~~~l~~ 85 (120)
T PF01408_consen 73 SSHAEIAKKALEA 85 (120)
T ss_dssp GGHHHHHHHHHHT
T ss_pred cchHHHHHHHHHc
Confidence 9999888876654
No 139
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.08 E-value=4.6e-05 Score=72.80 Aligned_cols=97 Identities=22% Similarity=0.249 Sum_probs=68.9
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH-HCCceec-CCC--c----CCHHhhhccCCEEE
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGT--L----GDIYETISGSDLVL 183 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~-~~~--~----~~~~e~i~~ADvIi 183 (313)
|+|+|||.|.||+-+|..|.+. |.+|.+..|..+ ..+.-+ +.|+... ++. . ....+.....|+||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechH-HHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence 7899999999999999999998 988877776532 222222 2344311 110 0 01112245789999
Q ss_pred EcccchhHHHHHHHHHhcCCCCcEEE-EecCch
Q 021401 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (313)
Q Consensus 184 LavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~ 215 (313)
++++-....+.++.+.+++.+++.|+ .--|+.
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~ 108 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLG 108 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCC
Confidence 99999988889999999999988765 667875
No 140
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.05 E-value=0.00015 Score=69.91 Aligned_cols=156 Identities=18% Similarity=0.220 Sum_probs=97.0
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCC--------cCCHHhhhccCCEEE
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT--------LGDIYETISGSDLVL 183 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~--------~~~~~e~i~~ADvIi 183 (313)
|+|.|+|.|.||.-++..|.+. |.+|.+..|.. . .+.-++.|+...+.. .....+....+|+||
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~~-~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRSR-R-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecHH-H-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 6899999999999999999999 86666666543 2 444455575432211 112235667899999
Q ss_pred EcccchhHHHHHHHHHhcCCCCcEEE-EecCchh-hhhhhcccCCCCCccEEEecc-----CCCchhHHHHHHhcccccC
Q 021401 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSIGLDFPKNIGVIAVCP-----KGMGPSVRRLYVQGKEING 256 (313)
Q Consensus 184 LavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l-~~~~~~~~~l~~~i~vV~vhP-----n~pg~~~r~lf~~G~e~~g 256 (313)
++++-.+..+.++.+.+.+++++.|+ .--|... ..+.. .++...-+.++.+ .+|+... ..|
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~---~~~~~~il~G~~~~~a~~~~~g~v~---------~~g 140 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK---ILPKETVLGGVTTHGAVREGPGHVV---------HTG 140 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH---hCCcceEEEEEeeeeeEecCCceEE---------Eec
Confidence 99999999999999999999998655 6667753 33433 4455422233333 2333331 122
Q ss_pred CCceEEEEeccCCCHHHHHHHHHHHHHcCCCc
Q 021401 257 AGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (313)
Q Consensus 257 ~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~ 288 (313)
.|... +........+..+.+.++++..|...
T Consensus 141 ~g~~~-ig~~~~~~~~~~~~i~~~~~~a~~~~ 171 (307)
T COG1893 141 LGDTV-IGELRGGRDELVKALAELFKEAGLEV 171 (307)
T ss_pred CCcEE-EccCCCCchHHHHHHHHHHHhCCCCe
Confidence 34444 33333322355556666666666443
No 141
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.05 E-value=4.4e-05 Score=72.27 Aligned_cols=156 Identities=16% Similarity=0.216 Sum_probs=105.2
Q ss_pred CEEEEEcccch--------------------HHHHHHHHHhchhhhcCCcEEEEEecC----CcccHHHHHHCCceecCC
Q 021401 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENG 167 (313)
Q Consensus 112 kkIgIIG~G~m--------------------G~AlA~~Lr~~~~~~~~G~~Vivg~r~----~~~s~~~A~~~G~~~~~~ 167 (313)
+||.|.|.||+ |..+|--+... |++|++...+ +.+.++.-...|+..
T Consensus 2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v--- 72 (340)
T COG4007 2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV--- 72 (340)
T ss_pred ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE---
Confidence 67777777775 44556655556 9998877643 234477778889875
Q ss_pred CcCCHHhhhccCCEEEEcccchhH-HHHHHHHHhcCCCCcEEEEecCch---h-hhhhhcccCC-CCCccEEEeccCC-C
Q 021401 168 TLGDIYETISGSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL---L-GHLQSIGLDF-PKNIGVIAVCPKG-M 240 (313)
Q Consensus 168 ~~~~~~e~i~~ADvIiLavP~~a~-~~vi~ei~~~mk~gaiLid~~Gv~---l-~~~~~~~~~l-~~~i~vV~vhPn~-p 240 (313)
+.+..++++.+.+.+|-+|-... ..+.++|.+++..|++|+..+-+. + -.++. .+.. ++++.+-..||-+ |
T Consensus 73 -v~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~-~Lr~kR~dVGvssmHPAgvP 150 (340)
T COG4007 73 -VSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEG-ELRTKREDVGVSSMHPAGVP 150 (340)
T ss_pred -ecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhh-hhcCchhhcCccccCCCCCC
Confidence 45777899999999999999854 568889999999999998766542 2 22222 2222 3577777788843 5
Q ss_pred chhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCC
Q 021401 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (313)
Q Consensus 241 g~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~ 286 (313)
|....+.|.-+ |.+. .-.+-++++.++++.+++++.|.
T Consensus 151 Gtp~h~~yvia------gr~t--~g~elATeEQi~r~velaes~Gk 188 (340)
T COG4007 151 GTPQHGHYVIA------GRST--EGKELATEEQIERCVELAESTGK 188 (340)
T ss_pred CCCCCceEEEe------ccCC--CceeeccHHHHHHHHHHHHhcCC
Confidence 55533333321 1111 01235678999999999999994
No 142
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=98.03 E-value=1.1e-05 Score=72.87 Aligned_cols=91 Identities=18% Similarity=0.148 Sum_probs=58.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc-cCCEEE
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~-~ADvIi 183 (313)
..+|+| |+|+|+|+|+||..+|+.|.+. |++|++.+++..+..+.+...|... .+.+++.. ++|+++
T Consensus 23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~v 90 (200)
T cd01075 23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELFGATV-----VAPEEIYSVDADVFA 90 (200)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EcchhhccccCCEEE
Confidence 367899 9999999999999999999999 9998755443322223333335442 23455554 899998
Q ss_pred EcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021401 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 184 LavP~~a~~~vi~ei~~~mk~gaiLid~ 211 (313)
.+..-..+. ++..+.|+. .+|+..
T Consensus 91 p~A~~~~I~---~~~~~~l~~-~~v~~~ 114 (200)
T cd01075 91 PCALGGVIN---DDTIPQLKA-KAIAGA 114 (200)
T ss_pred ecccccccC---HHHHHHcCC-CEEEEC
Confidence 666543222 233444543 455543
No 143
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.00 E-value=1.7e-05 Score=75.89 Aligned_cols=76 Identities=21% Similarity=0.237 Sum_probs=61.3
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| ++|+|||. |.||..+|..|.+. |..|.+.. . + +.++.+.+++||+||.
T Consensus 154 i~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~~-s--~----------------t~~l~~~~~~ADIVI~ 207 (284)
T PRK14179 154 VELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLTH-S--R----------------TRNLAEVARKADILVV 207 (284)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEEC-C--C----------------CCCHHHHHhhCCEEEE
Confidence 47899 99999999 99999999999998 99877651 1 1 1267789999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
+++.... ++. .++|+|++|+|++
T Consensus 208 avg~~~~---v~~--~~ik~GavVIDvg 230 (284)
T PRK14179 208 AIGRGHF---VTK--EFVKEGAVVIDVG 230 (284)
T ss_pred ecCcccc---CCH--HHccCCcEEEEec
Confidence 9997654 322 2389999999985
No 144
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=0.00014 Score=72.27 Aligned_cols=88 Identities=20% Similarity=0.306 Sum_probs=61.8
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc-------------------HHHHHHCCceecCCCcCCH
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-------------------FAEARAAGFTEENGTLGDI 172 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s-------------------~~~A~~~G~~~~~~~~~~~ 172 (313)
.+|||||+|-+|-.+|..+... |++| +|.|.++.. .+.+++.|.-. .+++.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~------G~~V-iG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lr---aTtd~ 79 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA------GFKV-IGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLR---ATTDP 79 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc------CCce-EeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCce---EecCh
Confidence 7999999999999999999888 9886 566644321 23455555332 12344
Q ss_pred HhhhccCCEEEEcccch--h--------HHHHHHHHHhcCCCCcEEEE
Q 021401 173 YETISGSDLVLLLISDA--A--------QADNYEKIFSCMKPNSILGL 210 (313)
Q Consensus 173 ~e~i~~ADvIiLavP~~--a--------~~~vi~ei~~~mk~gaiLid 210 (313)
+ -++.||++++|+|.. . ..+..+.|.+.|++|.+|+.
T Consensus 80 ~-~l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIl 126 (436)
T COG0677 80 E-ELKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVIL 126 (436)
T ss_pred h-hcccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEE
Confidence 4 456999999999732 1 11234578999999999874
No 145
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.99 E-value=7.9e-06 Score=69.20 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=67.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEEecCCcccHHHHHHCC---ceecCCCcCCHHhhhccCCE
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDL 181 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~~G---~~~~~~~~~~~~e~i~~ADv 181 (313)
.+++| +++.|||.|-+|++++..|.+. |.. +.+.+|..++..+.+...+ +.. ....+..+.+.++|+
T Consensus 8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~--~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEA--IPLEDLEEALQEADI 78 (135)
T ss_dssp STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEE--EEGGGHCHHHHTESE
T ss_pred CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccce--eeHHHHHHHHhhCCe
Confidence 57899 9999999999999999999999 885 8888887655555555542 111 114466678899999
Q ss_pred EEEcccchhHHHHH-HHHHhcCCCC-cEEEEec
Q 021401 182 VLLLISDAAQADNY-EKIFSCMKPN-SILGLSH 212 (313)
Q Consensus 182 IiLavP~~a~~~vi-~ei~~~mk~g-aiLid~~ 212 (313)
||.++|.... .+ ++..+...+. .+++|.+
T Consensus 79 vI~aT~~~~~--~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 79 VINATPSGMP--IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp EEE-SSTTST--SSTHHHHTTTCHHCSEEEES-
T ss_pred EEEecCCCCc--ccCHHHHHHHHhhhhceeccc
Confidence 9999997654 22 2334333322 3888885
No 146
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.95 E-value=3.9e-05 Score=64.86 Aligned_cols=99 Identities=19% Similarity=0.235 Sum_probs=71.0
Q ss_pred EEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCC----------cCCHHhhhccCCEEE
Q 021401 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL 183 (313)
Q Consensus 114 IgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~----------~~~~~e~i~~ADvIi 183 (313)
|.|+|.|.||.-+|..|.+. |++|.+..+.. ..+.-.+.|+...+.. ..+..+.....|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 78999999999999999988 99987777653 3344455665431111 111124577899999
Q ss_pred EcccchhHHHHHHHHHhcCCCCcEEE-EecCch-hhhhh
Q 021401 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQ 220 (313)
Q Consensus 184 LavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~-l~~~~ 220 (313)
++++-.+..+.++.+.+++++++.|+ .--|+. ...+.
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~ 111 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLA 111 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHH
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHH
Confidence 99999999999999999999986554 667775 33443
No 147
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.92 E-value=3.8e-05 Score=71.58 Aligned_cols=155 Identities=16% Similarity=0.211 Sum_probs=107.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-----------CCceecC-------------
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN------------- 166 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~------------- 166 (313)
|+.++|||.|.||..+|+-...+ |++|.+.++. ++.+.+|.+ .+..+..
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~-~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r 83 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDAN-EDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR 83 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc------CCceEEecCC-HHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence 48899999999999999999999 9998766544 333333321 1111100
Q ss_pred -CCcCCHHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCch
Q 021401 167 -GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (313)
Q Consensus 167 -~~~~~~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiLi-d~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~ 242 (313)
.+.++..++++++|+||=++-.+.-. ++++++-...|++++++ ..+++.+..+.. .....-.|.+.|=--|.+
T Consensus 84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~---~~~~~srf~GlHFfNPvP 160 (298)
T KOG2304|consen 84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS---ATQRPSRFAGLHFFNPVP 160 (298)
T ss_pred HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh---hccChhhhceeeccCCch
Confidence 12456777888999998776554432 36777777778999886 788888766654 334456788888877787
Q ss_pred hHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce
Q 021401 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (313)
Q Consensus 243 ~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~ 289 (313)
.| .|.+ +..+.+++++.......+.+.+|..-+
T Consensus 161 vM-KLvE-------------Vir~~~TS~eTf~~l~~f~k~~gKttV 193 (298)
T KOG2304|consen 161 VM-KLVE-------------VIRTDDTSDETFNALVDFGKAVGKTTV 193 (298)
T ss_pred hH-HHhh-------------hhcCCCCCHHHHHHHHHHHHHhCCCce
Confidence 75 2222 345678888988888999999996543
No 148
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.88 E-value=2.6e-05 Score=77.95 Aligned_cols=98 Identities=19% Similarity=0.196 Sum_probs=66.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
++.| ++++|||.|.||..+++.|+.. |. +|++.++...+..+.+.+.|... ....+..+.+.++|+||.+
T Consensus 179 ~~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~--~~~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 179 DLSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEA--IPLDELPEALAEADIVISS 249 (423)
T ss_pred CccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcE--eeHHHHHHHhccCCEEEEC
Confidence 4789 9999999999999999999988 87 67777776544445666665321 0123566788999999999
Q ss_pred ccchhH---HHHHHHHHh-cCCCCcEEEEecC
Q 021401 186 ISDAAQ---ADNYEKIFS-CMKPNSILGLSHG 213 (313)
Q Consensus 186 vP~~a~---~~vi~ei~~-~mk~gaiLid~~G 213 (313)
++.... .+.++.... .-+.+.+++|.+-
T Consensus 250 T~s~~~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 250 TGAPHPIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred CCCCCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 985432 234443221 1123467788863
No 149
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.85 E-value=3.4e-05 Score=75.98 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=66.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-C-CCcCCHHhhhccCCEEEEc
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~-~~~~~~~e~i~~ADvIiLa 185 (313)
+.+ .++.|||.|.+|...++.++.. |.+|++.+++..+....+...|.... . ....++.+.++++|+||.+
T Consensus 165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEc
Confidence 566 8899999999999999999999 99877666543322222233333110 0 0012456788999999999
Q ss_pred ccc--hhHHHHH-HHHHhcCCCCcEEEEec
Q 021401 186 ISD--AAQADNY-EKIFSCMKPNSILGLSH 212 (313)
Q Consensus 186 vP~--~a~~~vi-~ei~~~mk~gaiLid~~ 212 (313)
++. .....++ ++....||++.+|+|++
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 853 2223444 46778899999999875
No 150
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=97.83 E-value=3.8e-05 Score=75.45 Aligned_cols=94 Identities=24% Similarity=0.260 Sum_probs=78.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
.-++| |++.|.|+|-.|..+|+.++.. |.+|++..-. +-..-+|.-.||. +.+++|+++.+|++|-+
T Consensus 205 ~liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvD-PI~AleA~MdGf~-----V~~m~~Aa~~gDifiT~ 271 (420)
T COG0499 205 VLLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVD-PIRALEAAMDGFR-----VMTMEEAAKTGDIFVTA 271 (420)
T ss_pred eeecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecC-chHHHHHhhcCcE-----EEEhHHhhhcCCEEEEc
Confidence 35788 9999999999999999999999 9998877654 3334567778998 45899999999999999
Q ss_pred ccchhHHHHHH-HHHhcCCCCcEEEEecCch
Q 021401 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (313)
Q Consensus 186 vP~~a~~~vi~-ei~~~mk~gaiLid~~Gv~ 215 (313)
+-.. +++. +.+..||+|+||..++-|.
T Consensus 272 TGnk---dVi~~eh~~~MkDgaIl~N~GHFd 299 (420)
T COG0499 272 TGNK---DVIRKEHFEKMKDGAILANAGHFD 299 (420)
T ss_pred cCCc---CccCHHHHHhccCCeEEecccccc
Confidence 8874 4565 7888899999999888763
No 151
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.80 E-value=4.4e-05 Score=73.46 Aligned_cols=90 Identities=18% Similarity=0.168 Sum_probs=60.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC---C--ceecCCCcCCHHhhhccCCEEE
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDLVL 183 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---G--~~~~~~~~~~~~e~i~~ADvIi 183 (313)
.. ++|+|||+|.||..+++.+... ....+|.+++|..++..+.+.+. | +.. ..+.++++++||+|+
T Consensus 124 ~~-~~v~iiG~G~~a~~~~~al~~~----~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDIVi 194 (314)
T PRK06141 124 DA-SRLLVVGTGRLASLLALAHASV----RPIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADIIS 194 (314)
T ss_pred CC-ceEEEECCcHHHHHHHHHHHhc----CCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCEEE
Confidence 34 9999999999999999877652 01346777777655444444432 3 221 457888999999998
Q ss_pred EcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021401 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 184 LavP~~a~~~vi~ei~~~mk~gaiLid~ 211 (313)
.++|.. ..++.. +.++||++|.-+
T Consensus 195 ~aT~s~--~pvl~~--~~l~~g~~i~~i 218 (314)
T PRK06141 195 CATLST--EPLVRG--EWLKPGTHLDLV 218 (314)
T ss_pred EeeCCC--CCEecH--HHcCCCCEEEee
Confidence 888865 234432 457899854433
No 152
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.76 E-value=6.1e-05 Score=72.13 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=61.3
Q ss_pred cccCCCCEEEEEcccch-HHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~m-G~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+++| +++.|||.|.+ |..++..|... |..|.+...+ ..++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~ 207 (285)
T PRK14189 154 IPLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVA 207 (285)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEE
Confidence 46899 99999999988 99999999988 8887653211 2367789999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
+++-. .++.. +++|+|++|+|++
T Consensus 208 avG~~---~~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 208 AVGKR---NVLTA--DMVKPGATVIDVG 230 (285)
T ss_pred cCCCc---CccCH--HHcCCCCEEEEcc
Confidence 99943 34543 6789999999987
No 153
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.76 E-value=0.00017 Score=67.51 Aligned_cols=161 Identities=18% Similarity=0.251 Sum_probs=90.6
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021401 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (313)
Q Consensus 111 ikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~ 189 (313)
+++|+|||+ |.||+.+++.+.+. .++++....+.+.+........|+.. ..+++++++++|+|+.++||.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~ 71 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPE 71 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHH
Confidence 379999998 99999999988763 16776655555433222112234422 458888888999999999999
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCCCccEEEeccCCC-chh--HHHHHHhcccccCCCceEEEEe
Q 021401 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM-GPS--VRRLYVQGKEINGAGINSSFAV 265 (313)
Q Consensus 190 a~~~vi~ei~~~mk~ga-iLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~p-g~~--~r~lf~~G~e~~g~G~~~iitp 265 (313)
...+++...+.+ |. +|+-..|+.....+.... ..+.+.++- .||.. +.. ++-+-...+.+..+.+ -|+-.
T Consensus 72 ~~~~~~~~al~~---G~~vvigttG~s~~~~~~l~~-aa~~~~v~~-s~n~s~g~~~~~~l~~~aa~~l~~~d~-ei~E~ 145 (257)
T PRK00048 72 ATLENLEFALEH---GKPLVIGTTGFTEEQLAELEE-AAKKIPVVI-APNFSIGVNLLMKLAEKAAKYLGDYDI-EIIEA 145 (257)
T ss_pred HHHHHHHHHHHc---CCCEEEECCCCCHHHHHHHHH-HhcCCCEEE-ECcchHHHHHHHHHHHHHHHhcCCCCE-EEEEc
Confidence 887777655543 33 444456776433332111 123444443 34332 211 1111111111111211 12333
Q ss_pred cc----C-CCHHHHHHHHHHHHHcCC
Q 021401 266 HQ----D-VDGRATNVALGWSVALGS 286 (313)
Q Consensus 266 ~~----d-~~~ea~e~a~~L~~alG~ 286 (313)
|. | .++.++.+++.+.+..+.
T Consensus 146 HH~~K~DaPSGTA~~l~~~i~~~~~~ 171 (257)
T PRK00048 146 HHRHKVDAPSGTALKLAEAIAEARGR 171 (257)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHhhcc
Confidence 33 3 378999999988887763
No 154
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.75 E-value=9.4e-05 Score=61.25 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=59.0
Q ss_pred EEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCc-ccHHHHHHCC----ceecCCCc-CCHHhhhccCCEEEEc
Q 021401 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAG----FTEENGTL-GDIYETISGSDLVLLL 185 (313)
Q Consensus 113 kIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G----~~~~~~~~-~~~~e~i~~ADvIiLa 185 (313)
||+||| .|.+|..+.+.|.+. +.++++....+.. .-.......+ +.+ -.. ....+.+.++|+|++|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-----p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-----PDFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----STEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC-----CCccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence 699999 999999999999885 2455433333222 1111222221 211 001 1233456999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
+|.....++.+++ +++|..|+|.++.
T Consensus 74 ~~~~~~~~~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 74 LPHGASKELAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp SCHHHHHHHHHHH---HHTTSEEEESSST
T ss_pred CchhHHHHHHHHH---hhCCcEEEeCCHH
Confidence 9999888888876 4578899998875
No 155
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.74 E-value=8.6e-05 Score=71.89 Aligned_cols=95 Identities=17% Similarity=0.085 Sum_probs=63.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH---HCCceecCCCcCCHHhhhccCCEEEEccc
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLIS 187 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~---~~G~~~~~~~~~~~~e~i~~ADvIiLavP 187 (313)
.+++||||+|.||..+++.+.... ..-+|.++++..++....+. +.|+.. ....+.+|++++||+|+.+||
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~----~~~~v~V~~r~~~~~~~~~~~~~~~g~~v--~~~~~~~eav~~aDiVitaT~ 201 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVF----DLEEVSVYCRTPSTREKFALRASDYEVPV--RAATDPREAVEGCDILVTTTP 201 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcC----CCCEEEEECCCHHHHHHHHHHHHhhCCcE--EEeCCHHHHhccCCEEEEecC
Confidence 389999999999999998886641 12356666655443332222 345311 125689999999999999998
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecCch
Q 021401 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (313)
Q Consensus 188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv~ 215 (313)
... .++. .+.+|||+.|.-++...
T Consensus 202 s~~--P~~~--~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 202 SRK--PVVK--ADWVSEGTHINAIGADA 225 (325)
T ss_pred CCC--cEec--HHHcCCCCEEEecCCCC
Confidence 642 2332 23569999988777553
No 156
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=97.72 E-value=0.00014 Score=70.32 Aligned_cols=94 Identities=21% Similarity=0.193 Sum_probs=75.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLav 186 (313)
-+.| |...|.|+|..|..-|++||.+ |..|++..-. +-..-+|.-.|+. +.+++|++++.|+++-++
T Consensus 211 M~aG-Kv~Vv~GYGdVGKgCaqaLkg~------g~~VivTEiD-PI~ALQAaMeG~~-----V~tm~ea~~e~difVTtT 277 (434)
T KOG1370|consen 211 MIAG-KVAVVCGYGDVGKGCAQALKGF------GARVIVTEID-PICALQAAMEGYE-----VTTLEEAIREVDIFVTTT 277 (434)
T ss_pred eecc-cEEEEeccCccchhHHHHHhhc------CcEEEEeccC-chHHHHHHhhccE-----eeeHHHhhhcCCEEEEcc
Confidence 4677 9999999999999999999999 9888776543 3344466667887 569999999999999988
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021401 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~ 215 (313)
--..+ +..+.+..||.++||+..+-+.
T Consensus 278 Gc~di--i~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 278 GCKDI--ITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred CCcch--hhHHHHHhCcCCcEEecccccc
Confidence 75433 3358899999999999887764
No 157
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.72 E-value=0.00011 Score=73.45 Aligned_cols=98 Identities=16% Similarity=0.154 Sum_probs=65.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
..+.| ++++|||.|.||..+++.|+.. | .+|++.++...+..+.+.+.|... -...+..+.+.++|+||.
T Consensus 176 ~~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~--i~~~~l~~~l~~aDvVi~ 246 (417)
T TIGR01035 176 GSLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEA--VKFEDLEEYLAEADIVIS 246 (417)
T ss_pred CCccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeE--eeHHHHHHHHhhCCEEEE
Confidence 35889 9999999999999999999998 8 467777776544445666655421 012356788899999999
Q ss_pred cccchhH---HHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQ---ADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~---~~vi~ei~~~mk~gaiLid~~ 212 (313)
+++.... .+.++.....=+...+++|.+
T Consensus 247 aT~s~~~ii~~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 247 STGAPHPIVSKEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred CCCCCCceEcHHHHHHHHhcCCCCeEEEEeC
Confidence 9975442 123333221111234677886
No 158
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.70 E-value=0.00032 Score=66.03 Aligned_cols=81 Identities=21% Similarity=0.232 Sum_probs=52.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC--CceecCCCcCCHHhhhccCCEEEEcccc
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYETISGSDLVLLLISD 188 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~~~~~~~~~~~e~i~~ADvIiLavP~ 188 (313)
|++|||||+|.||..+++.+.+. .++++....+.+....+..... +... +.+++++-.+.|+|+.++|+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~~ 71 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHSIDAVRRALGEAVRV----VSSVDALPQRPDLVVECAGH 71 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCCHHHHhhhhccCCee----eCCHHHhccCCCEEEECCCH
Confidence 47999999999999999998764 1445433333322111111111 3321 45777774569999999999
Q ss_pred hhHHHHHHHHHh
Q 021401 189 AAQADNYEKIFS 200 (313)
Q Consensus 189 ~a~~~vi~ei~~ 200 (313)
..+.++..+.+.
T Consensus 72 ~~~~e~~~~aL~ 83 (265)
T PRK13303 72 AALKEHVVPILK 83 (265)
T ss_pred HHHHHHHHHHHH
Confidence 888777766554
No 159
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.68 E-value=0.00013 Score=64.53 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=59.6
Q ss_pred cccCCCCEEEEEcccch-HHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~m-G~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|.| ++|.|||.|.| |..+++.|.+. |.+|.+..|.. .++.+.+++||+||.
T Consensus 40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence 57899 99999999997 77799999998 88776666541 156678999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
+++-.. ++.. +.++++.+|+|.+
T Consensus 94 at~~~~---ii~~--~~~~~~~viIDla 116 (168)
T cd01080 94 AVGKPG---LVKG--DMVKPGAVVIDVG 116 (168)
T ss_pred cCCCCc---eecH--HHccCCeEEEEcc
Confidence 998753 3432 1367788888876
No 160
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.66 E-value=0.00013 Score=69.81 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=62.2
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| +++.|||.|. +|..+|+.|... |..|++..++. .++.+.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~t-------------------~~l~~~~~~ADIVIs 207 (286)
T PRK14175 154 IDLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSRS-------------------KDMASYLKDADVIVS 207 (286)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCc-------------------hhHHHHHhhCCEEEE
Confidence 47999 9999999988 999999999988 88887665431 156788999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~G 213 (313)
+++-.. ++.. +++|+|++|+|++-
T Consensus 208 Avg~p~---~i~~--~~vk~gavVIDvGi 231 (286)
T PRK14175 208 AVGKPG---LVTK--DVVKEGAVIIDVGN 231 (286)
T ss_pred CCCCCc---ccCH--HHcCCCcEEEEcCC
Confidence 998643 3442 35799999999874
No 161
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.59 E-value=0.00015 Score=64.41 Aligned_cols=99 Identities=20% Similarity=0.165 Sum_probs=63.5
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC----Cc--eecC-CCcCCHHhhhc
Q 021401 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF--TEEN-GTLGDIYETIS 177 (313)
Q Consensus 106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~--~~~~-~~~~~~~e~i~ 177 (313)
.+++| +++.|+|. |.+|.++++.|.+. |.+|++..|..++..+.+.+. +. ...+ ....+..+.++
T Consensus 24 ~~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (194)
T cd01078 24 KDLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK 96 (194)
T ss_pred cCCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh
Confidence 36788 99999995 99999999999988 888877766543322222221 11 1000 00113347889
Q ss_pred cCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021401 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (313)
Q Consensus 178 ~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~G 213 (313)
++|+||.++|..... ........+++.+++|+.-
T Consensus 97 ~~diVi~at~~g~~~--~~~~~~~~~~~~vv~D~~~ 130 (194)
T cd01078 97 GADVVFAAGAAGVEL--LEKLAWAPKPLAVAADVNA 130 (194)
T ss_pred cCCEEEECCCCCcee--chhhhcccCceeEEEEccC
Confidence 999999999977651 1222224556788888753
No 162
>PLN00203 glutamyl-tRNA reductase
Probab=97.58 E-value=0.00029 Score=72.65 Aligned_cols=99 Identities=15% Similarity=0.114 Sum_probs=64.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhhccCCEEEE
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
+|.+ ++|+|||.|.||..+++.|... |. +|++.+|...+....+.+. |....-....+..+++.++|+||.
T Consensus 263 ~l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIs 335 (519)
T PLN00203 263 SHAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFT 335 (519)
T ss_pred CCCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEE
Confidence 3788 9999999999999999999988 86 5777777655544555444 221000013466788999999999
Q ss_pred cccchh---HHHHHHHHHhcCC---CCcEEEEec
Q 021401 185 LISDAA---QADNYEKIFSCMK---PNSILGLSH 212 (313)
Q Consensus 185 avP~~a---~~~vi~ei~~~mk---~gaiLid~~ 212 (313)
+|+-.. ..+.++++.+.-+ ...+++|.+
T Consensus 336 AT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 336 STSSETPLFLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred ccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeC
Confidence 986332 2345554432211 113566765
No 163
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.55 E-value=0.0007 Score=66.14 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=64.0
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHH-HHHHCCceec-----------CC---CcCCHHhh
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEE-----------NG---TLGDIYET 175 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-~A~~~G~~~~-----------~~---~~~~~~e~ 175 (313)
+.+|||+|+|.||+.+++.+.+. .+++++...+.+.+... .++..|+... +. ...+.+++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence 46899999999999999998764 26776655554432222 2333332100 00 02356778
Q ss_pred hccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 176 i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
+.++|+|+.++|+....+..+... +.|+.+++.+|.
T Consensus 76 ~~~vDVVIdaT~~~~~~e~a~~~~---~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVGAKNKELYE---KAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhhHHHHHHHH---HCCCEEEEcCCC
Confidence 889999999999988777776544 347778888774
No 164
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.54 E-value=0.00023 Score=69.08 Aligned_cols=167 Identities=18% Similarity=0.070 Sum_probs=97.2
Q ss_pred cccccchhhhhhcccccch-hhhhhcCCCcccccccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021401 72 LDFETSVFKKDAISLANRD-EFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (313)
Q Consensus 72 ~~f~~~~~~~~~~~~~~~~-e~~v~~G~w~f~~~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (313)
|+--+.++-.--+....|. |. .++|+=.+--..-.... -++.|||.|.+|..-|+.+... |-+|.+.+.+-
T Consensus 130 LaPMSeVAGrla~q~Ga~~lek-~~GG~GvllgGvpGV~~-~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~ 201 (371)
T COG0686 130 LAPMSEVAGRLAAQAGAYYLEK-TNGGKGVLLGGVPGVLP-AKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNI 201 (371)
T ss_pred cchHHHHhhhHHHHHHHHHHHh-ccCCceeEecCCCCCCC-ccEEEECCccccchHHHHHhcc------CCeeEEEecCH
Confidence 4445555554334444433 44 66666543211122233 5899999999999999988877 88888887653
Q ss_pred cccHHHHHHCCce--ecCCCcCCHHhhhccCCEEEEcc--cchhHHHHH-HHHHhcCCCCcEEEEec----Cch-hhhhh
Q 021401 151 SRSFAEARAAGFT--EENGTLGDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH----GFL-LGHLQ 220 (313)
Q Consensus 151 ~~s~~~A~~~G~~--~~~~~~~~~~e~i~~ADvIiLav--P~~a~~~vi-~ei~~~mk~gaiLid~~----Gv~-l~~~~ 220 (313)
.+....-...+.. ..-++...+++.++++|+||-++ |-.....++ ++..++||||++|+|++ |+- ..+.-
T Consensus 202 ~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~T 281 (371)
T COG0686 202 DRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPT 281 (371)
T ss_pred HHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccc
Confidence 3322222222221 11123346788999999999765 555566655 58899999999998764 541 11111
Q ss_pred h-cccCCCCCccEEEeccCCCchhHHH
Q 021401 221 S-IGLDFPKNIGVIAVCPKGMGPSVRR 246 (313)
Q Consensus 221 ~-~~~~l~~~i~vV~vhPn~pg~~~r~ 246 (313)
. .....-++-.+--+-||+|+...|.
T Consensus 282 Th~~PtY~~~gvvhY~VaNmPgaVprT 308 (371)
T COG0686 282 THDDPTYEVDGVVHYGVANMPGAVPRT 308 (371)
T ss_pred cCCCCceeecCEEEEecCCCCccccch
Confidence 0 0001111112223668999988544
No 165
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.52 E-value=0.0011 Score=62.56 Aligned_cols=163 Identities=15% Similarity=0.139 Sum_probs=90.8
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEec-CCcccH--HHHHH-----CCceecCCCcCCHHhhhccCCE
Q 021401 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSF--AEARA-----AGFTEENGTLGDIYETISGSDL 181 (313)
Q Consensus 111 ikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r-~~~~s~--~~A~~-----~G~~~~~~~~~~~~e~i~~ADv 181 (313)
+++|+||| +|.||+.+++.+.+. .+++++...+ .++... ..+.. .|+.. ..+++++...+|+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~Dv 71 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDV 71 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCE
Confidence 36899999 699999999998764 2777665555 322111 11222 23331 3577777567999
Q ss_pred EEEcccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCC-CccEEEeccCCCchh---HHHHHHhcccccCC
Q 021401 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPK-NIGVIAVCPKGMGPS---VRRLYVQGKEINGA 257 (313)
Q Consensus 182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~-~i~vV~vhPn~pg~~---~r~lf~~G~e~~g~ 257 (313)
||.++||....+++...+.+=+ .+|+-..|+.....+.......+ ++. +...||+.--. ++-+....+.+..+
T Consensus 72 VIdfT~p~~~~~~~~~al~~g~--~vVigttg~~~e~~~~l~~aA~~~g~~-v~~a~NfSlGv~ll~~~~~~aa~~l~~~ 148 (266)
T TIGR00036 72 LIDFTTPEGVLNHLKFALEHGV--RLVVGTTGFSEEDKQELADLAEKAGIA-AVIAPNFSIGVNLMFKLLEKAAKYLGDY 148 (266)
T ss_pred EEECCChHHHHHHHHHHHHCCC--CEEEECCCCCHHHHHHHHHHHhcCCcc-EEEECcccHHHHHHHHHHHHHHHhccCC
Confidence 9999999888887776554322 25555668754333221111111 233 34445554332 11111111112122
Q ss_pred CceEEEEecc----C-CCHHHHHHHHHHHHHcCC
Q 021401 258 GINSSFAVHQ----D-VDGRATNVALGWSVALGS 286 (313)
Q Consensus 258 G~~~iitp~~----d-~~~ea~e~a~~L~~alG~ 286 (313)
.+- |+-.|. | .++.++.+++.+.+..+.
T Consensus 149 die-I~E~HH~~K~DaPSGTA~~l~~~i~~~~~~ 181 (266)
T TIGR00036 149 DIE-IIELHHRHKKDAPSGTALKTAEMIAEARGE 181 (266)
T ss_pred CEE-eeeeccCCCCCCCCHHHHHHHHHHHHhhcc
Confidence 222 233443 2 378999999888887763
No 166
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.51 E-value=0.00021 Score=68.54 Aligned_cols=92 Identities=20% Similarity=0.139 Sum_probs=65.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHh-chhhhcCCc-EEEEEecCCcccHHHHHHC---CceecCCCcCCHHhhhccCCEEE
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVL 183 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~-~~~~~~~G~-~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~e~i~~ADvIi 183 (313)
.. ++++|||.|.||..+++.+.. . +. +|.++.|..++..+.+.+. ++.. ...+.++++.++|+|+
T Consensus 124 ~~-~~v~IiGaG~qa~~~~~al~~~~------~~~~v~v~~r~~~~a~~~a~~~~~~~~~~---~~~~~~~av~~aDiVi 193 (304)
T PRK07340 124 PP-GDLLLIGTGVQARAHLEAFAAGL------PVRRVWVRGRTAASAAAFCAHARALGPTA---EPLDGEAIPEAVDLVV 193 (304)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHHHhcCCee---EECCHHHHhhcCCEEE
Confidence 45 899999999999999999975 3 54 5666666544444444433 2221 1347888999999999
Q ss_pred EcccchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021401 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (313)
Q Consensus 184 LavP~~a~~~vi~ei~~~mk~gaiLid~~Gv~ 215 (313)
.+||... .+++. .+|||+.|.-+++..
T Consensus 194 taT~s~~--Pl~~~---~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 194 TATTSRT--PVYPE---AARAGRLVVAVGAFT 220 (304)
T ss_pred EccCCCC--ceeCc---cCCCCCEEEecCCCC
Confidence 9999764 34442 479999888777654
No 167
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.51 E-value=0.00033 Score=68.23 Aligned_cols=77 Identities=10% Similarity=0.224 Sum_probs=52.1
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~ 191 (313)
.+|+|||+|+||..+++.+.+. .+++++...+++... ......+... ..+.++++.+.|+|++|+|...+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~~-~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGAE-TLDTETPVYA----VADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcHH-HHhhcCCccc----cCCHHHhccCCCEEEEcCCCccC
Confidence 6899999999999999998764 267765444554311 1222234331 34677788899999999998776
Q ss_pred HHHHHHH
Q 021401 192 ADNYEKI 198 (313)
Q Consensus 192 ~~vi~ei 198 (313)
.+....+
T Consensus 74 ~~~~~~~ 80 (324)
T TIGR01921 74 IPEQAPY 80 (324)
T ss_pred HHHHHHH
Confidence 5544433
No 168
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.47 E-value=0.00044 Score=69.38 Aligned_cols=97 Identities=19% Similarity=0.245 Sum_probs=71.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|++ +++.|||.|-||.-.|+.|... |. +|++.+|.-++..+.|.+.|... ..+.++.+.+.++|+||.
T Consensus 174 ~~L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvVis 244 (414)
T COG0373 174 GSLKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVIS 244 (414)
T ss_pred ccccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEE
Confidence 45899 9999999999999999999999 86 68888988777788888888432 224567789999999999
Q ss_pred ccc-chhH-H-HHHHHHHhcCCCCcEEEEec
Q 021401 185 LIS-DAAQ-A-DNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP-~~a~-~-~vi~ei~~~mk~gaiLid~~ 212 (313)
+|. |..+ . +.+++..+.-+. -+++|.+
T Consensus 245 sTsa~~~ii~~~~ve~a~~~r~~-~livDia 274 (414)
T COG0373 245 STSAPHPIITREMVERALKIRKR-LLIVDIA 274 (414)
T ss_pred ecCCCccccCHHHHHHHHhcccC-eEEEEec
Confidence 975 3333 2 255544333222 3556664
No 169
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.46 E-value=0.00043 Score=57.90 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=60.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH---HHHH-----HCCceecCCCcCCHHhhhccCCEE
Q 021401 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (313)
Q Consensus 112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~---~~A~-----~~G~~~~~~~~~~~~e~i~~ADvI 182 (313)
++|+|+|+ |.||..+++.+.+. .++++..+.+++.... +... ..|+.. ..++++++.++|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence 58999999 99999999999883 1788666655543100 0001 123332 35889999999999
Q ss_pred EEcccchhHHHHHHHHHhcCCCCc-EEEEecCchh
Q 021401 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL 216 (313)
Q Consensus 183 iLavP~~a~~~vi~ei~~~mk~ga-iLid~~Gv~l 216 (313)
|-.+-|....+.++....+ |. +|+=+.|+.-
T Consensus 72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~ 103 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSD 103 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHH
T ss_pred EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCH
Confidence 9999887777777765554 33 4556778853
No 170
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.46 E-value=0.0012 Score=62.81 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=43.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHH--CCceec--C---CCcCCHHhhhccCCEE
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--N---GTLGDIYETISGSDLV 182 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~--~G~~~~--~---~~~~~~~e~i~~ADvI 182 (313)
|+||+|||.|.||..+|..+... |+ ++++.+...+.....+.+ ...... . ....+. +.+++||+|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV 74 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV 74 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence 58999999999999999998876 65 666665533222221211 110000 0 012344 568999999
Q ss_pred EEcc
Q 021401 183 LLLI 186 (313)
Q Consensus 183 iLav 186 (313)
|++.
T Consensus 75 ii~~ 78 (307)
T PRK06223 75 VITA 78 (307)
T ss_pred EECC
Confidence 9986
No 171
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.36 E-value=0.0019 Score=61.84 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=63.7
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc--HHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s--~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP 187 (313)
.+|||||.|+||.-++..+.+. .+.++....+.++++ .+.+++.|+.. ...+.+++++ +-|+|++++|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-----~~~elvaV~d~d~es~~la~A~~~Gi~~---~~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-----EHLEMVAMVGIDPESDGLARARELGVKT---SAEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-----CCcEEEEEEeCCcccHHHHHHHHCCCCE---EECCHHHHhcCCCCCEEEECCC
Confidence 5799999999999998777654 155654444444433 45677788652 1346778775 5788999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecC
Q 021401 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (313)
Q Consensus 188 ~~a~~~vi~ei~~~mk~gaiLid~~G 213 (313)
...+.++.....+ .|+.|+|-..
T Consensus 74 ~~~H~e~a~~al~---aGk~VIdekP 96 (285)
T TIGR03215 74 AKAHARHARLLAE---LGKIVIDLTP 96 (285)
T ss_pred cHHHHHHHHHHHH---cCCEEEECCc
Confidence 9998887765543 5777776554
No 172
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.36 E-value=0.00061 Score=65.85 Aligned_cols=92 Identities=18% Similarity=0.236 Sum_probs=62.9
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHH----HCCceecCCCcCCHHhhhccCCEEEEcc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~~~e~i~~ADvIiLav 186 (313)
++++|||.|.||..++..+... .+. +|.+..|..++..+.+. +.++.. ....+.+++++++|+|+.+|
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~-----~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAV-----RDIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhc-----CCccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence 8999999999999999887543 054 45566555443333333 224321 11457889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021401 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~ 215 (313)
|-.. .++. ..+|+|+.|+-+++..
T Consensus 201 ~s~~--p~i~---~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 201 NAKT--PVFS---EKLKKGVHINAVGSFM 224 (325)
T ss_pred CCCC--cchH---HhcCCCcEEEecCCCC
Confidence 9652 3443 5679999998777653
No 173
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.35 E-value=0.00061 Score=65.12 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=59.2
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+++| +++.|||.|. .|.+++..|.+. |..|.+..++ ..++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~-------------------t~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSR-------------------TQNLPELVKQADIIVG 208 (283)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 47899 9999999997 999999999988 8877766542 1145677799999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
+++-.. .+.. +++|+|++|+|++
T Consensus 209 AtG~~~---~v~~--~~lk~gavViDvg 231 (283)
T PRK14192 209 AVGKPE---LIKK--DWIKQGAVVVDAG 231 (283)
T ss_pred ccCCCC---cCCH--HHcCCCCEEEEEE
Confidence 996222 3331 4589999999886
No 174
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.34 E-value=0.0018 Score=62.56 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=66.3
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhhc-----cCCEEEE
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL 184 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~e~i~-----~ADvIiL 184 (313)
.+|||||.|++|..++..+.+. .+.++....+.++ +..+.+++.|+.. +..+.+++++ +.|+|+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence 6899999999999988887764 1556554444443 3346677888752 1357788884 5899999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
++|...+.++..... +.|+.++|....
T Consensus 77 AT~a~~H~e~a~~a~---eaGk~VID~sPA 103 (302)
T PRK08300 77 ATSAGAHVRHAAKLR---EAGIRAIDLTPA 103 (302)
T ss_pred CCCHHHHHHHHHHHH---HcCCeEEECCcc
Confidence 999998888777654 458888876654
No 175
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=97.34 E-value=0.0013 Score=64.14 Aligned_cols=96 Identities=13% Similarity=0.160 Sum_probs=60.0
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-ceec-CCCcCCHHh-hhccCCEEEEcc
Q 021401 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIYE-TISGSDLVLLLI 186 (313)
Q Consensus 111 ikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~-~~~~~~~~e-~i~~ADvIiLav 186 (313)
|++|+|||. |.+|+.+++.|.+. .+.+++...++.+.....+...+ +... +....+.++ ...++|+|++|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al 76 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL 76 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence 379999996 99999999998765 24565444443222111222111 1100 001122222 457899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
|.....++..+..+ .|+.|+|.++-
T Consensus 77 P~~~~~~~v~~a~~---aG~~VID~S~~ 101 (343)
T PRK00436 77 PHGVSMDLAPQLLE---AGVKVIDLSAD 101 (343)
T ss_pred CcHHHHHHHHHHHh---CCCEEEECCcc
Confidence 99988888877654 58899988764
No 176
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.32 E-value=0.00076 Score=69.41 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=68.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee------cCCC-------cCC---
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE------ENGT-------LGD--- 171 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~------~~~~-------~~~--- 171 (313)
..+ .++.|||.|.+|...++.++.. |.+|++.+++ ....+.++..|... +++. ..+
T Consensus 162 vp~-akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~-~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPP-AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTR-PEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeccccccccccccceeecCHHH
Confidence 445 7999999999999999999999 9886555544 44567777777542 0000 000
Q ss_pred -------HHhhhccCCEEEEcc--cchhHHHHH-HHHHhcCCCCcEEEEec
Q 021401 172 -------IYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (313)
Q Consensus 172 -------~~e~i~~ADvIiLav--P~~a~~~vi-~ei~~~mk~gaiLid~~ 212 (313)
+.+.++++|+||-++ |-.....++ ++..+.||||.+|+|++
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 345678999999887 222233444 47788999999999875
No 177
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.30 E-value=0.00031 Score=65.85 Aligned_cols=95 Identities=19% Similarity=0.080 Sum_probs=62.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC---CceecCCCcCCHHh-hhccCCEEE
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL 183 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~e-~i~~ADvIi 183 (313)
.++ +++.|+|.|.+|.+++..|.+. |.+|.+.+|..++..+.+.+. |... ..+.++ ...++|+||
T Consensus 115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII 183 (270)
T ss_pred ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence 567 9999999999999999999988 888877777644433333332 2111 113333 346899999
Q ss_pred EcccchhHHHHHH-H-HHhcCCCCcEEEEecC
Q 021401 184 LLISDAAQADNYE-K-IFSCMKPNSILGLSHG 213 (313)
Q Consensus 184 LavP~~a~~~vi~-e-i~~~mk~gaiLid~~G 213 (313)
.++|.....++-+ . ....++++.+++|+.-
T Consensus 184 natp~gm~~~~~~~~~~~~~l~~~~~v~D~~y 215 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVPAEKLKEGMVVYDMVY 215 (270)
T ss_pred ECCCCCCCCCCCCCCCCHHHcCCCCEEEEecc
Confidence 9999753221100 0 1234788888888753
No 178
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.30 E-value=0.00095 Score=63.99 Aligned_cols=76 Identities=17% Similarity=0.160 Sum_probs=60.2
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| +++.|||-|. .|..++..|... |..|.+..++ +.++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 155 IDTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVV 208 (285)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 9999999998 999999999988 8877665432 1267789999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-.. ++.. +++|+|++|+|++
T Consensus 209 avG~p~---~v~~--~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPG---FIPG--EWIKPGAIVIDVG 231 (285)
T ss_pred cCCCcc---cccH--HHcCCCcEEEEcc
Confidence 995332 2321 6689999999987
No 179
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.28 E-value=0.0012 Score=65.25 Aligned_cols=146 Identities=18% Similarity=0.140 Sum_probs=97.5
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH-HHHC-C--ceecCCCcCCHHhh---hccCCEEEE
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAA-G--FTEENGTLGDIYET---ISGSDLVLL 184 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-A~~~-G--~~~~~~~~~~~~e~---i~~ADvIiL 184 (313)
..||.||++.||+.+++++.+. |+.|.+++|..++.-+. +.+. | ++- ..+++|. ++.--+|+|
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i~g----a~S~ed~v~klk~PR~iil 76 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKIIG----AYSLEDFVSKLKKPRVIIL 76 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCcccC----CCCHHHHHHhcCCCcEEEE
Confidence 5689999999999999999999 99998888876654322 2221 2 331 3466765 467889999
Q ss_pred cccchhHHH-HHHHHHhcCCCCcEEEEecCc----hhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCc
Q 021401 185 LISDAAQAD-NYEKIFSCMKPNSILGLSHGF----LLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (313)
Q Consensus 185 avP~~a~~~-vi~ei~~~mk~gaiLid~~Gv----~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~ 259 (313)
.++-..-++ +|+++.++|.+|.+|+|-+-. +....++ .-.+++-||+.--++ |.|.-=+|.
T Consensus 77 lvkAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~e---l~k~GilfvG~GVSG-----------GEEGAR~GP 142 (487)
T KOG2653|consen 77 LVKAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRE---LAKKGILFVGSGVSG-----------GEEGARYGP 142 (487)
T ss_pred EeeCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHH---HHhcCcEEEecCccC-----------cccccccCC
Confidence 998777666 889999999999999987643 1222221 112456677643322 111111222
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHcC
Q 021401 260 NSSFAVHQDVDGRATNVALGWSVALG 285 (313)
Q Consensus 260 ~~iitp~~d~~~ea~e~a~~L~~alG 285 (313)
. +.|..+ .++...++.+++.+-
T Consensus 143 -S-lMpGg~--~~Awp~ik~ifq~ia 164 (487)
T KOG2653|consen 143 -S-LMPGGS--KEAWPHIKDIFQKIA 164 (487)
T ss_pred -c-cCCCCC--hHHHHHHHHHHHHHH
Confidence 2 466655 689999999998884
No 180
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.28 E-value=0.00097 Score=57.50 Aligned_cols=76 Identities=14% Similarity=0.140 Sum_probs=59.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+++| ++|.|||-+ ..|..++..|.+. |..|.+..++ ..++++.+++||+|+.
T Consensus 24 ~~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~-------------------t~~l~~~v~~ADIVvs 77 (140)
T cd05212 24 VRLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWK-------------------TIQLQSKVHDADVVVV 77 (140)
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 47899 999999955 8899999999988 8887655432 1266788999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-.. +++ .+++|||++|+|++
T Consensus 78 Atg~~~---~i~--~~~ikpGa~Vidvg 100 (140)
T cd05212 78 GSPKPE---KVP--TEWIKPGATVINCS 100 (140)
T ss_pred ecCCCC---ccC--HHHcCCCCEEEEcC
Confidence 998653 343 34589999999765
No 181
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.27 E-value=0.0013 Score=58.00 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=53.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| |++.|||-+ .+|..++..|.+. |..|.+...+ ..++++.+++||+||.
T Consensus 32 ~~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~-------------------T~~l~~~~~~ADIVVs 85 (160)
T PF02882_consen 32 IDLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSK-------------------TKNLQEITRRADIVVS 85 (160)
T ss_dssp -STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TT-------------------SSSHHHHHTTSSEEEE
T ss_pred CCCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCC-------------------CCcccceeeeccEEee
Confidence 47999 999999988 6999999999999 8877654322 1267788999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
++.-.. +++ .+++|+|++|+|++-.
T Consensus 86 a~G~~~---~i~--~~~ik~gavVIDvG~~ 110 (160)
T PF02882_consen 86 AVGKPN---LIK--ADWIKPGAVVIDVGIN 110 (160)
T ss_dssp -SSSTT----B---GGGS-TTEEEEE--CE
T ss_pred eecccc---ccc--cccccCCcEEEecCCc
Confidence 997543 333 3568999999998744
No 182
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.27 E-value=0.00051 Score=68.93 Aligned_cols=75 Identities=13% Similarity=0.178 Sum_probs=57.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccCCEEE
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~i~~ADvIi 183 (313)
..+.| +++.|||.|-||..+++.|.+. |. ++++.+|...+..+.+.+.+ ... ..+.++.+.+.++|+||
T Consensus 177 ~~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~--~~~~~l~~~l~~aDiVI 247 (414)
T PRK13940 177 DNISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASA--HYLSELPQLIKKADIII 247 (414)
T ss_pred cCccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeE--ecHHHHHHHhccCCEEE
Confidence 56889 9999999999999999999988 86 67788887555556666654 211 01235567899999999
Q ss_pred Ecccch
Q 021401 184 LLISDA 189 (313)
Q Consensus 184 LavP~~ 189 (313)
.||+-.
T Consensus 248 ~aT~a~ 253 (414)
T PRK13940 248 AAVNVL 253 (414)
T ss_pred ECcCCC
Confidence 999854
No 183
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.27 E-value=0.0017 Score=60.64 Aligned_cols=82 Identities=23% Similarity=0.304 Sum_probs=58.3
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHH-HHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a 190 (313)
++|||||+|.||+.+...+++- .-+.+.++.+|++.+..+ .+...+.. ...+++|.+++.|+|+=|..+++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~----~~~~e~v~v~D~~~ek~~~~~~~~~~~----~~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG----RVDFELVAVYDRDEEKAKELEASVGRR----CVSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC----CcceeEEEEecCCHHHHHHHHhhcCCC----ccccHHHHhhccceeeeeCCHHH
Confidence 5899999999999999998863 013455555555443332 22222332 24689999999999999999999
Q ss_pred HHHHHHHHHhc
Q 021401 191 QADNYEKIFSC 201 (313)
Q Consensus 191 ~~~vi~ei~~~ 201 (313)
..+...+++..
T Consensus 73 v~e~~~~~L~~ 83 (255)
T COG1712 73 VREYVPKILKA 83 (255)
T ss_pred HHHHhHHHHhc
Confidence 98888776654
No 184
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.27 E-value=0.00039 Score=65.66 Aligned_cols=99 Identities=19% Similarity=0.178 Sum_probs=65.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCc-CCHHhhhccCCEEE
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVL 183 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~-~~~~e~i~~ADvIi 183 (313)
.++.+ +++.|+|.|-+|.+++..|.+. | .+|.+.+|..++..+.+.+.+... .... .+..+.+.++|+||
T Consensus 119 ~~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivI 190 (278)
T PRK00258 119 VDLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLII 190 (278)
T ss_pred CCCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEE
Confidence 36788 9999999999999999999998 8 578888876544444444332110 0001 13346778999999
Q ss_pred EcccchhHHH--HHHHHHhcCCCCcEEEEec
Q 021401 184 LLISDAAQAD--NYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 184 LavP~~a~~~--vi~ei~~~mk~gaiLid~~ 212 (313)
-++|.....+ ...-....++++++|+|+.
T Consensus 191 naTp~g~~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 191 NATSAGMSGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred ECCcCCCCCCCCCCCCCHHHcCCCCEEEEee
Confidence 9999765421 1010123467788888763
No 185
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.27 E-value=0.00069 Score=65.54 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=63.4
Q ss_pred CEEEEEcccchHHHHHHHHHh-chhhhcCCc-EEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhhccCCEEEEc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRD-SLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~-~~~~~~~G~-~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
++++|||.|.||..+++.|.. . +. +|.++.|..++..+.+.+. |+.. ....+.++++++||+|+.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~------~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v--~~~~~~~~av~~aDiVvta 201 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVR------DIRSARIWARDSAKAEALALQLSSLLGIDV--TAATDPRAAMSGADIIVTT 201 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhC------CccEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhccCCEEEEe
Confidence 899999999999999999975 4 54 5667777655444444332 4421 1145788999999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
||... .++. .+.+++|+.|..++..
T Consensus 202 T~s~~--p~i~--~~~l~~g~~i~~vg~~ 226 (326)
T TIGR02992 202 TPSET--PILH--AEWLEPGQHVTAMGSD 226 (326)
T ss_pred cCCCC--cEec--HHHcCCCcEEEeeCCC
Confidence 98743 2343 1347899988766543
No 186
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=97.26 E-value=0.0014 Score=62.68 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=80.9
Q ss_pred HCCceecCCCcCCHHhhhccCCEEEEcccchh-HHHHHHHHHhcCCCCcEEEEecCch---h-hhhhhcccCCCCCccEE
Q 021401 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---L-GHLQSIGLDFPKNIGVI 233 (313)
Q Consensus 159 ~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a-~~~vi~ei~~~mk~gaiLid~~Gv~---l-~~~~~~~~~l~~~i~vV 233 (313)
+.|+.. ..+..|+++++|++|+=+|-.. +.++++++.++++.|++|+.++-+. + ..++. .-++|+.+.
T Consensus 126 daGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~---l~R~DvgIs 198 (342)
T PRK00961 126 DLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKD---LGRDDLNVT 198 (342)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHH---hCcccCCee
Confidence 467764 4577799999999999999887 6789999999999999999888663 2 22222 226799999
Q ss_pred EeccCCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021401 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (313)
Q Consensus 234 ~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~ 287 (313)
..|| +..+.+ .|+ .+ + -.+.++++.++...+|.++.|..
T Consensus 199 S~HP-aaVPgt-----~Gq-------~~-i-~egyAtEEqI~klveL~~sa~k~ 237 (342)
T PRK00961 199 SYHP-GAVPEM-----KGQ-------VY-I-AEGYADEEAVEKLYEIGKKARGN 237 (342)
T ss_pred ccCC-CCCCCC-----CCc-------ee-c-ccccCCHHHHHHHHHHHHHhCCC
Confidence 9999 434443 143 22 2 35678999999999999999953
No 187
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.26 E-value=0.0017 Score=59.90 Aligned_cols=94 Identities=20% Similarity=0.201 Sum_probs=65.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE---EEEEecCC----ccc-------HHHHHHCCceecCCCcCC
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKG----SRS-------FAEARAAGFTEENGTLGD 171 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~---Vivg~r~~----~~s-------~~~A~~~G~~~~~~~~~~ 171 (313)
..+++ ++|.|+|.|.+|.+++..|.+. |.. +++.+|++ .+. .+.+++.+... ...+
T Consensus 21 ~~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~ 90 (226)
T cd05311 21 KKIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGT 90 (226)
T ss_pred CCccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCC
Confidence 46888 9999999999999999999988 874 77777762 221 22334332111 0126
Q ss_pred HHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 172 ~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
+.++++++|+||-++|+.... ++....|+++.++.+..
T Consensus 91 l~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~ls 128 (226)
T cd05311 91 LKEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFALA 128 (226)
T ss_pred HHHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEEeC
Confidence 778889999999999865543 24555667888887665
No 188
>PRK06046 alanine dehydrogenase; Validated
Probab=97.25 E-value=0.00087 Score=64.84 Aligned_cols=92 Identities=16% Similarity=0.133 Sum_probs=60.0
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH-HHHHH----CCceecCCCcCCHHhhhccCCEEEEcc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~----~G~~~~~~~~~~~~e~i~~ADvIiLav 186 (313)
++++|||+|.||...++++... .+.+.+..++++.+.. +.+.+ .|+.. ....+.+++++ +|+|+++|
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~-----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV-----FDLEEVRVYDRTKSSAEKFVERMSSVVGCDV--TVAEDIEEACD-CDILVTTT 201 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh-----CCceEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhh-CCEEEEec
Confidence 8999999999999999998753 1555444444433332 22222 24321 01347888887 99999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021401 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~ 215 (313)
|... .+++ .+++|+|+.|.-+++..
T Consensus 202 ps~~--P~~~--~~~l~~g~hV~~iGs~~ 226 (326)
T PRK06046 202 PSRK--PVVK--AEWIKEGTHINAIGADA 226 (326)
T ss_pred CCCC--cEec--HHHcCCCCEEEecCCCC
Confidence 9753 3343 23568999988777653
No 189
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.24 E-value=0.00071 Score=66.41 Aligned_cols=97 Identities=19% Similarity=0.242 Sum_probs=64.0
Q ss_pred CCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhhccCCEEEEc
Q 021401 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 110 GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
+-++++|||.|.|+..+++.+..-. .+ +|.++.|..++..+.+.+ .|+.. ....+.++++++||+|+.+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr-----~i~~V~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL-----GIEEIRLYDIDPAATAKLARNLAGPGLRI--VACRSVAEAVEGADIITTV 200 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC-----CceEEEEEeCCHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence 3489999999999999998887641 34 566776664433332222 23321 1145899999999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021401 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv~ 215 (313)
|+......+++. +.+|||+.|.-+++..
T Consensus 201 T~S~~~~Pvl~~--~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 201 TADKTNATILTD--DMVEPGMHINAVGGDC 228 (346)
T ss_pred cCCCCCCceecH--HHcCCCcEEEecCCCC
Confidence 974432234442 3578999887766553
No 190
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=97.21 E-value=0.0018 Score=50.52 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=49.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
..+++ ++++|+|.|.+|..++..|.+. +. ++.+.++ |+++-
T Consensus 19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~ 60 (86)
T cd05191 19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT 60 (86)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence 44788 9999999999999999999887 54 3433322 99999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEe
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~ 211 (313)
+++...... ++....++++.+|+|.
T Consensus 61 ~~~~~~~~~--~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 61 ATPAGVPVL--EEATAKINEGAVVIDL 85 (86)
T ss_pred cCCCCCCch--HHHHHhcCCCCEEEec
Confidence 998754322 3345667889998875
No 191
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.20 E-value=0.0028 Score=60.90 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=43.6
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHH----------CCceecCCCcCCHHhhhccCC
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----------AGFTEENGTLGDIYETISGSD 180 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~----------~G~~~~~~~~~~~~e~i~~AD 180 (313)
+||+|||.|.||..+|..+... |+ +|++.+.........+.+ .+.+. ...+.++ +++||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNYAD-TANSD 71 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCHHH-hCCCC
Confidence 6899999999999999999887 65 665555432211112210 11111 1246665 78999
Q ss_pred EEEEccc
Q 021401 181 LVLLLIS 187 (313)
Q Consensus 181 vIiLavP 187 (313)
+||++.+
T Consensus 72 iVIitag 78 (305)
T TIGR01763 72 IVVITAG 78 (305)
T ss_pred EEEEcCC
Confidence 9999987
No 192
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.20 E-value=0.0057 Score=60.03 Aligned_cols=182 Identities=20% Similarity=0.239 Sum_probs=105.5
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhh-cCCcEEEEEecCCccc---HHHHHH-----------CCcee-cC-CCcCCHHh
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEA-KSDIVVKVGLRKGSRS---FAEARA-----------AGFTE-EN-GTLGDIYE 174 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~-~~G~~Vivg~r~~~~s---~~~A~~-----------~G~~~-~~-~~~~~~~e 174 (313)
.+|+|||.|+=|.++|+.+.....+. ....+|..+.+...-. ....+- .|+.. ++ ....|+.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 89999999999999999987752222 1122444333221100 011100 01100 00 11468889
Q ss_pred hhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEE-EecCchhh----------hhhhcccCCCCCccEE----------
Q 021401 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLLG----------HLQSIGLDFPKNIGVI---------- 233 (313)
Q Consensus 175 ~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLi-d~~Gv~l~----------~~~~~~~~l~~~i~vV---------- 233 (313)
++++||+++..+|.+-+..+++++..++|+++.-+ .+-|+... .+-.+.+.. ...++
T Consensus 102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI--~~~vL~GaNiA~EVa 179 (372)
T KOG2711|consen 102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGI--PCSVLMGANIASEVA 179 (372)
T ss_pred HhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCC--CceeecCCchHHHHH
Confidence 99999999999999999999999999999999744 66666421 111111111 22222
Q ss_pred ---------Eecc-CCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCceeecChhHHHhhccc
Q 021401 234 ---------AVCP-KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIF 303 (313)
Q Consensus 234 ---------~vhP-n~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~~~tT~~~e~~~d~~ 303 (313)
+..+ +-.......+|.+ .++.+.+.+|++.-++-=+++=+.++|+.++--++...-+++-|+
T Consensus 180 ~~~f~e~tIg~~~~~~~~~~l~~lf~~--------p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~ 251 (372)
T KOG2711|consen 180 NEKFCETTIGYKDKKEAGILLKKLFRT--------PYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAII 251 (372)
T ss_pred hccccceeEeccchhhcchHHHHHhCC--------CceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHH
Confidence 2221 1111124445543 456677777775554444455577777777766666666666554
No 193
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=97.19 E-value=0.0025 Score=61.13 Aligned_cols=107 Identities=14% Similarity=0.157 Sum_probs=81.6
Q ss_pred HCCceecCCCcCCHHhhhccCCEEEEcccchh-HHHHHHHHHhcCCCCcEEEEecCchh----hhhhhcccCCCCCccEE
Q 021401 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLL----GHLQSIGLDFPKNIGVI 233 (313)
Q Consensus 159 ~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a-~~~vi~ei~~~mk~gaiLid~~Gv~l----~~~~~~~~~l~~~i~vV 233 (313)
+.|+.. ..+..|+++++|++|+=+|-.. +.++++++.++++.|++|+.++-+.. ..++. .-++|+.+.
T Consensus 124 daGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~---l~R~DvgVs 196 (340)
T TIGR01723 124 DLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFED---LGREDLNVT 196 (340)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHh---hCcccCCee
Confidence 467764 4577799999999999999887 67899999999999999998886632 22222 226799999
Q ss_pred EeccCCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021401 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (313)
Q Consensus 234 ~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~ 287 (313)
..|| +..+.+ .|--+ + ..+.++++.++...+|.++.|..
T Consensus 197 S~HP-aaVPgt------------~~q~Y-i-~egyAtEEqI~klveL~~sa~k~ 235 (340)
T TIGR01723 197 SYHP-GCVPEM------------KGQVY-I-AEGYASEEAVNKLYELGKKARGK 235 (340)
T ss_pred ccCC-CCCCCC------------CCceE-e-ecccCCHHHHHHHHHHHHHhCCC
Confidence 9999 334442 12223 3 47899999999999999999954
No 194
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.0038 Score=58.52 Aligned_cols=157 Identities=15% Similarity=0.070 Sum_probs=89.5
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhH
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~ 191 (313)
+.+||||.|..|.+......+- ++.. -+. .+.+.+.++..--+. .....+.+...+-.++++.-+|+..+
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~------~~~c-s~i--~srS~~~a~~LaE~~-~a~p~d~~~~ael~~~vfv~vpd~~~ 80 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV------VVAC-SAI--SSRSRDRAQNLAETY-VAPPLDVAKSAELLLLVFVDVPDALY 80 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch------heee-hhh--hhcCHHHHhhchhcc-CCCccchhhChhhhceEEecchHHHH
Confidence 7899999999999955444333 4432 111 123333443311110 00012344445556778888887644
Q ss_pred HHHHHHHHhcCCCCcEEEEecCch-hhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCceEEEEeccCCC
Q 021401 192 ADNYEKIFSCMKPNSILGLSHGFL-LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (313)
Q Consensus 192 ~~vi~ei~~~mk~gaiLid~~Gv~-l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~ 270 (313)
.++... ...+||++|++++|+. .+.+.. .-+.+.--..+||++..+...+-..+- .+..+.|+-. |
T Consensus 81 s~vaa~--~~~rpg~iv~HcSga~~~~il~~---~gr~g~~~asiHP~f~Fsgl~edl~rl-----~d~~~~i~ea-D-- 147 (289)
T COG5495 81 SGVAAT--SLNRPGTIVAHCSGANGSGILAP---LGRQGCIPASIHPAFSFSGLDEDLSRL-----KDTIFGITEA-D-- 147 (289)
T ss_pred HHHHHh--cccCCCeEEEEccCCCchhhhhh---hhhcCCcceeecccccccCCHHHHHhC-----cccEEEeecc-c--
Confidence 444332 2357999999999986 333332 212344456799999888866644433 2332323322 2
Q ss_pred HHHHHHHHHHHHHcCCCceee
Q 021401 271 GRATNVALGWSVALGSPFTFA 291 (313)
Q Consensus 271 ~ea~e~a~~L~~alG~~~~~~ 291 (313)
+.....++.|+..+|++.++.
T Consensus 148 ~~g~ai~q~la~emgg~~f~V 168 (289)
T COG5495 148 DVGYAIVQSLALEMGGEPFCV 168 (289)
T ss_pred ccccHHHHHHHHHhCCCceee
Confidence 346667889999999886543
No 195
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.17 E-value=0.0021 Score=60.30 Aligned_cols=153 Identities=12% Similarity=0.174 Sum_probs=97.3
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc----------ccHHHHHHCCceecC----------CCcCC
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN----------GTLGD 171 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~~----------~~~~~ 171 (313)
.||+|+|.|.+|+++|...... |++|..++-..+ +......+.|....+ +.+.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 5899999999999999999988 999876654321 111222233322100 23568
Q ss_pred HHhhhccCCEEEEcccchhHH--HHHHHHHhcCCCCcEEEEecCchh-hhhhhcccCCCCCccEEEeccCCCchhHHHHH
Q 021401 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILGLSHGFLL-GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (313)
Q Consensus 172 ~~e~i~~ADvIiLavP~~a~~--~vi~ei~~~mk~gaiLid~~Gv~l-~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf 248 (313)
++|++++|=.|-=|+|..-.- .++.++-..+.|..|+.-+.+... ..+-. + +-.....+-.||--|-. |
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~-g--L~~k~q~lvaHPvNPPy-----f 149 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSA-G--LINKEQCLVAHPVNPPY-----F 149 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhh-h--hhhhhheeEecCCCCCc-----c
Confidence 899999987777788865543 266666566667666654444322 12211 1 22335678899933221 1
Q ss_pred HhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021401 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (313)
Q Consensus 249 ~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~ 287 (313)
.- -.=+.|+.-++++.+++..+|...+|-.
T Consensus 150 iP---------LvElVPaPwTsp~tVdrt~~lM~sigq~ 179 (313)
T KOG2305|consen 150 IP---------LVELVPAPWTSPDTVDRTRALMRSIGQE 179 (313)
T ss_pred cc---------hheeccCCCCChhHHHHHHHHHHHhCCC
Confidence 10 1126788889999999999999999944
No 196
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.16 E-value=0.0014 Score=63.99 Aligned_cols=95 Identities=21% Similarity=0.253 Sum_probs=66.6
Q ss_pred CCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHH---HCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 110 GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~---~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
+...++|||.|.|+.-+.+.++.-. ++ +|.++.|..+...+.+. +.+... -....+.++++++||+|+-+
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v~-----~~~~I~i~~r~~~~~e~~a~~l~~~~~~~-v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAVR-----DIREIRVYSRDPEAAEAFAARLRKRGGEA-VGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhhC-----CccEEEEEcCCHHHHHHHHHHHHhhcCcc-ceeccCHHHHhhcCCEEEEe
Confidence 3489999999999999999998751 44 56667666544443332 233210 12356889999999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
||... .++. .++++||+.|.-+++.
T Consensus 203 T~s~~--Pil~--~~~l~~G~hI~aiGad 227 (330)
T COG2423 203 TPSTE--PVLK--AEWLKPGTHINAIGAD 227 (330)
T ss_pred cCCCC--Ceec--HhhcCCCcEEEecCCC
Confidence 99877 3333 2457899999877764
No 197
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=97.15 E-value=0.0025 Score=62.35 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=59.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEE-EEecCCcccHHHHHHCCceec--CCCc--CCHHhhhccCCEEEEc
Q 021401 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEE--NGTL--GDIYETISGSDLVLLL 185 (313)
Q Consensus 112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~--~~~~--~~~~e~i~~ADvIiLa 185 (313)
++|+|||. |.+|..+.+.|.+. ++.+++ +..++.+.........+.... +... .+.+++++++|+|++|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~a 75 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLA 75 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEEC
Confidence 58999998 99999999999865 245555 222222111111111221000 0001 2455666789999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
+|.....++..++.+ .|+.|+|.++.
T Consensus 76 lP~~~s~~~~~~~~~---~G~~VIDlS~~ 101 (346)
T TIGR01850 76 LPHGVSAELAPELLA---AGVKVIDLSAD 101 (346)
T ss_pred CCchHHHHHHHHHHh---CCCEEEeCChh
Confidence 999988888877654 58889988764
No 198
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.08 E-value=0.0026 Score=60.26 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=55.9
Q ss_pred CEEEEEcccchHH-HHHHHHHhchhhhcCC--cEEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEc
Q 021401 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSD--IVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLL 185 (313)
Q Consensus 112 kkIgIIG~G~mG~-AlA~~Lr~~~~~~~~G--~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~i~~--ADvIiLa 185 (313)
.+|||||+|.+++ ..+..+++. + +.++...+++ ++..+.+.+.|+.. ...+.++++++ -|+|+++
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~Ia 74 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYIA 74 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEc
Confidence 7899999996664 578888776 4 3443333443 34456777778741 25689999986 5999999
Q ss_pred ccchhHHHHHHHH
Q 021401 186 ISDAAQADNYEKI 198 (313)
Q Consensus 186 vP~~a~~~vi~ei 198 (313)
+|+..+.++..+.
T Consensus 75 tp~~~H~e~~~~A 87 (342)
T COG0673 75 TPNALHAELALAA 87 (342)
T ss_pred CCChhhHHHHHHH
Confidence 9999998877543
No 199
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.07 E-value=0.0033 Score=57.07 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=58.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
-+|+| +++.|||.|.+|...++.|.+. |.+|++..+.-.+........| +..... .-.++.+.++|+||.
T Consensus 6 l~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~~~~--~~~~~~l~~adlVia 76 (202)
T PRK06718 6 IDLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRWKQK--EFEPSDIVDAFLVIA 76 (202)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEEEec--CCChhhcCCceEEEE
Confidence 58999 9999999999999999999998 8887766543222222222333 221001 111345789999999
Q ss_pred cccchhHHHHHHHHH
Q 021401 185 LISDAAQADNYEKIF 199 (313)
Q Consensus 185 avP~~a~~~vi~ei~ 199 (313)
++.+....+.+.+..
T Consensus 77 aT~d~elN~~i~~~a 91 (202)
T PRK06718 77 ATNDPRVNEQVKEDL 91 (202)
T ss_pred cCCCHHHHHHHHHHH
Confidence 999988877665443
No 200
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.06 E-value=0.0014 Score=62.99 Aligned_cols=94 Identities=13% Similarity=0.147 Sum_probs=64.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEc
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
.++++|||.|.||..+++.+..-. .+ +|.++.|..++..+.+.+ .|+.. ....+.++++++||+|+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~-----~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v--~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVY-----NPKRIRVYSRNFDHARAFAERFSKEFGVDI--RPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcC-----CCCEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence 389999999999999999987741 44 566666664443333332 24321 1246899999999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021401 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv~ 215 (313)
|+-.. .+++ .+++|||+.|.-++...
T Consensus 190 T~s~~--P~~~--~~~l~pg~hV~aiGs~~ 215 (301)
T PRK06407 190 TNSDT--PIFN--RKYLGDEYHVNLAGSNY 215 (301)
T ss_pred cCCCC--cEec--HHHcCCCceEEecCCCC
Confidence 99543 3443 23578998887776654
No 201
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.04 E-value=0.0042 Score=59.07 Aligned_cols=81 Identities=19% Similarity=0.150 Sum_probs=53.6
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-hccCCEEEEcccchh
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~-i~~ADvIiLavP~~a 190 (313)
++|||||+|.||..+++.|.+.. ..++++...+++.....+.. ..... .+.+++++ ..+.|+|+=|..+++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~---~~~~~l~~V~~~~~~~~~~~-~~~~~----~~~~l~~ll~~~~DlVVE~A~~~a 74 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADA---AQPCQLAALTRNAADLPPAL-AGRVA----LLDGLPGLLAWRPDLVVEAAGQQA 74 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCC---CCceEEEEEecCCHHHHHHh-hccCc----ccCCHHHHhhcCCCEEEECCCHHH
Confidence 79999999999999999987630 00355544455543222111 11122 25678886 588999999999888
Q ss_pred HHHHHHHHHh
Q 021401 191 QADNYEKIFS 200 (313)
Q Consensus 191 ~~~vi~ei~~ 200 (313)
..+....++.
T Consensus 75 v~e~~~~iL~ 84 (267)
T PRK13301 75 IAEHAEGCLT 84 (267)
T ss_pred HHHHHHHHHh
Confidence 8877666554
No 202
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=97.03 E-value=0.0016 Score=66.38 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=52.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
.++.| ++++|||.|.+|.+++..|.+. |.++++.+|...+..+.+...+... ....+.. .+.++|+||.+
T Consensus 328 ~~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~--~~~~~~~-~l~~~DiVIna 397 (477)
T PRK09310 328 IPLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKA--FPLESLP-ELHRIDIIINC 397 (477)
T ss_pred CCcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccce--echhHhc-ccCCCCEEEEc
Confidence 45788 9999999999999999999998 9888777765433333333332110 0011222 25789999999
Q ss_pred ccchh
Q 021401 186 ISDAA 190 (313)
Q Consensus 186 vP~~a 190 (313)
+|...
T Consensus 398 tP~g~ 402 (477)
T PRK09310 398 LPPSV 402 (477)
T ss_pred CCCCC
Confidence 99876
No 203
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.02 E-value=0.0027 Score=63.40 Aligned_cols=79 Identities=19% Similarity=0.178 Sum_probs=56.7
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCC-cEEEEEecCCcccHHHHHHCC---c---eecCCCcCCHHhhhccCCEEE
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAG---F---TEENGTLGDIYETISGSDLVL 183 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G---~---~~~~~~~~~~~e~i~~ADvIi 183 (313)
|++|.|||+|.+|..+|..|.+. + .+|.++.|..++. +++.... + ..+-.....+.+++++.|+||
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~~-~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEKC-ARIAELIGGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHHH-HHHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence 48999999999999999999888 6 7888888875433 3333332 1 110011224568999999999
Q ss_pred EcccchhHHHHHH
Q 021401 184 LLISDAAQADNYE 196 (313)
Q Consensus 184 LavP~~a~~~vi~ 196 (313)
.+.|+.....+++
T Consensus 74 n~~p~~~~~~i~k 86 (389)
T COG1748 74 NAAPPFVDLTILK 86 (389)
T ss_pred EeCCchhhHHHHH
Confidence 9999988777664
No 204
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.01 E-value=0.0019 Score=62.03 Aligned_cols=76 Identities=16% Similarity=0.103 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| +++.|||-| ..|..+|..|.+. |..|.+.... ..++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs~-------------------t~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 153 IEIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHIL-------------------TKDLSFYTQNADIVCV 206 (285)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeCC-------------------cHHHHHHHHhCCEEEE
Confidence 47899 999999999 9999999999988 8877655221 1256688999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-.. ++. .+++|+|++|+|++
T Consensus 207 AvG~p~---~i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 207 GVGKPD---LIK--ASMVKKGAVVVDIG 229 (285)
T ss_pred ecCCCC---cCC--HHHcCCCcEEEEee
Confidence 997543 333 23569999999987
No 205
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.00 E-value=0.0018 Score=61.94 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| +++.|||.+ ..|..+|..|... |..|.+..++. .++.+.+++||+||.
T Consensus 148 i~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~t-------------------~~L~~~~~~ADIvI~ 201 (279)
T PRK14178 148 ISIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSKT-------------------ENLKAELRQADILVS 201 (279)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecCh-------------------hHHHHHHhhCCEEEE
Confidence 47999 999999999 9999999999888 88776654321 257788999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
+++-. .++.+ +++|||++|+|++
T Consensus 202 Avgk~---~lv~~--~~vk~GavVIDVg 224 (279)
T PRK14178 202 AAGKA---GFITP--DMVKPGATVIDVG 224 (279)
T ss_pred CCCcc---cccCH--HHcCCCcEEEEee
Confidence 99733 34431 2369999999987
No 206
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.99 E-value=0.0047 Score=59.06 Aligned_cols=67 Identities=19% Similarity=0.218 Sum_probs=45.0
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHC-------C--ceecCCCcCCHHhhhccCC
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------G--FTEENGTLGDIYETISGSD 180 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~-------G--~~~~~~~~~~~~e~i~~AD 180 (313)
+||+|||.|.+|.++|..|... |. ++++.++..+.....+.+. + ... ...+. +.+++||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i---~~~~~-~~l~~aD 70 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPVKI---KAGDY-SDCKDAD 70 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEE---EcCCH-HHhCCCC
Confidence 5899999999999999999888 74 6666665544333333221 1 111 12233 4579999
Q ss_pred EEEEcccc
Q 021401 181 LVLLLISD 188 (313)
Q Consensus 181 vIiLavP~ 188 (313)
+||+++..
T Consensus 71 IVIitag~ 78 (306)
T cd05291 71 IVVITAGA 78 (306)
T ss_pred EEEEccCC
Confidence 99999865
No 207
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.99 E-value=0.0022 Score=58.44 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=62.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc--CC----HHhhhcc
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--GD----IYETISG 178 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~--~~----~~e~i~~ 178 (313)
.+|+| |++.|||-+ .+|..+|..|.+. |..|.+...+.-.... +.+-.. +... .+ +.+.+++
T Consensus 58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~~~~~---~~~~~~-hs~t~~~~~~~~l~~~~~~ 126 (197)
T cd01079 58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGIQVFT---RGESIR-HEKHHVTDEEAMTLDCLSQ 126 (197)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcccccc---cccccc-cccccccchhhHHHHHhhh
Confidence 37999 999999966 7899999999888 8887766432111000 000000 0001 12 6789999
Q ss_pred CCEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 179 ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
||+||.+++-.... +. .+++|+|++|+|++..
T Consensus 127 ADIVIsAvG~~~~~--i~--~d~ik~GavVIDVGi~ 158 (197)
T cd01079 127 SDVVITGVPSPNYK--VP--TELLKDGAICINFASI 158 (197)
T ss_pred CCEEEEccCCCCCc--cC--HHHcCCCcEEEEcCCC
Confidence 99999999865430 32 2457899999998743
No 208
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.98 E-value=0.0019 Score=62.58 Aligned_cols=94 Identities=19% Similarity=0.176 Sum_probs=64.5
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHH---HHCCceecCCCcCCHHhhhccCCEEEEcc
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEA---RAAGFTEENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A---~~~G~~~~~~~~~~~~e~i~~ADvIiLav 186 (313)
.++++|||.|.|+..+++.+.... .+ +|.++.|..++..+.+ .+.|+.. ....+.++++++||+|+.+|
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~-----~i~~v~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIV~taT 200 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVT-----DCRQLWVWGRSETALEEYRQYAQALGFAV--NTTLDAAEVAHAANLIVTTT 200 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcC-----CCCEEEEECCCHHHHHHHHHHHHhcCCcE--EEECCHHHHhcCCCEEEEec
Confidence 389999999999999999987641 33 5767766644433222 2224322 11457899999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021401 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~ 215 (313)
+-.. .+++ .+.+|||+.|.-+++..
T Consensus 201 ~s~~--P~~~--~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 201 PSRE--PLLQ--AEDIQPGTHITAVGADS 225 (315)
T ss_pred CCCC--ceeC--HHHcCCCcEEEecCCCC
Confidence 8543 3443 23578999988777654
No 209
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.98 E-value=0.0019 Score=62.56 Aligned_cols=91 Identities=21% Similarity=0.248 Sum_probs=60.8
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEcc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~i~~ADvIiLav 186 (313)
++++|||.|.+|.+++..+.... +. +|.++.|..++..+.+.+ .|+.. ....+.++++.+||+|+.++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~-----~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVR-----PIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-----CCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence 89999999999999999987530 44 566666654443444332 24321 11457889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecC
Q 021401 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLid~~G 213 (313)
|... .++.. ..+++|+.|..++.
T Consensus 206 ~s~~--p~i~~--~~l~~g~~v~~vg~ 228 (330)
T PRK08291 206 PSEE--PILKA--EWLHPGLHVTAMGS 228 (330)
T ss_pred CCCC--cEecH--HHcCCCceEEeeCC
Confidence 8653 34432 23678887765543
No 210
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.96 E-value=0.00087 Score=58.60 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=64.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecC------------------
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN------------------ 166 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~------------------ 166 (313)
+..+.. .+|.|+|.|..|..-++.+++. |.++++.+.. ....+.....+...-.
T Consensus 15 ~~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 15 PGGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDER-PERLRQLESLGAYFIEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp TTEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESS-HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCH
T ss_pred CCCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCC-HHHHHhhhcccCceEEEcccccccccccchhhhh
Confidence 455566 8999999999999999999999 9987666544 3333444444432100
Q ss_pred ----CCcCCHHhhhccCCEEEEcc--cchhHHHHHH-HHHhcCCCCcEEEEec
Q 021401 167 ----GTLGDIYETISGSDLVLLLI--SDAAQADNYE-KIFSCMKPNSILGLSH 212 (313)
Q Consensus 167 ----~~~~~~~e~i~~ADvIiLav--P~~a~~~vi~-ei~~~mk~gaiLid~~ 212 (313)
.....+.+.++.+|+||.++ |......++. +....|||+.+|+|++
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 00113557889999999643 5555667664 7888899999999874
No 211
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.95 E-value=0.0034 Score=53.73 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=43.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhhccCCE
Q 021401 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDL 181 (313)
Q Consensus 112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~-------G~~~~~~~~~~~~e~i~~ADv 181 (313)
+||+|||. |.+|.++|..|... +. ++.+.++........+.+. +... .......+.+++||+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~------~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~~~~~~~~~aDi 72 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ------GLADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITSGDYEALKDADI 72 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT------TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEESSGGGGTTESE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCceEEeccCcccceeeehhhhhhhhhccccc--ccccccccccccccE
Confidence 68999999 99999999999887 55 5555554433222222221 1100 001255678999999
Q ss_pred EEEcc
Q 021401 182 VLLLI 186 (313)
Q Consensus 182 IiLav 186 (313)
|+++.
T Consensus 73 vvita 77 (141)
T PF00056_consen 73 VVITA 77 (141)
T ss_dssp EEETT
T ss_pred EEEec
Confidence 99987
No 212
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=96.95 E-value=0.028 Score=52.13 Aligned_cols=145 Identities=14% Similarity=0.168 Sum_probs=84.6
Q ss_pred hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecC--C--------CcCCHHhhhccCCEEEEcccchhH
Q 021401 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAAQ 191 (313)
Q Consensus 122 mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~--------~~~~~~e~i~~ADvIiLavP~~a~ 191 (313)
||..+|..|.+. |.+|.+..|. +..+.-++.|+...+ + ...+.++ +...|+||+++|-.+.
T Consensus 2 iG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~~ 72 (293)
T TIGR00745 2 VGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQT 72 (293)
T ss_pred chHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchhH
Confidence 788999999988 9888777764 223334445643211 1 0112333 6789999999999988
Q ss_pred HHHHHHHHhcCCCCcEEE-EecCch-hhhhhhcccCCCCCccEE------EeccCCCchhHHHHHHhcccccCCCceEEE
Q 021401 192 ADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSIGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (313)
Q Consensus 192 ~~vi~ei~~~mk~gaiLi-d~~Gv~-l~~~~~~~~~l~~~i~vV------~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (313)
.+.++.+.+++.++++|+ ..-|+. ...+.. .++++ +++ .....+|+.. +..|.|... |
T Consensus 73 ~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~---~~~~~-~v~~g~~~~~~~~~~pg~v---------~~~~~~~~~-i 138 (293)
T TIGR00745 73 EEAAALLLPLIGKNTKVLFLQNGLGHEERLRE---LLPAR-RILGGVVTHGAVREEPGVV---------HHAGLGATK-I 138 (293)
T ss_pred HHHHHHhHhhcCCCCEEEEccCCCCCHHHHHH---HhCcc-CEEEEEEEEeeEEcCCcEE---------EEeccccEE-E
Confidence 889999999999888765 556774 333433 33432 233 2333344432 112233333 4
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCcee
Q 021401 264 AVHQDVDGRATNVALGWSVALGSPFTF 290 (313)
Q Consensus 264 tp~~d~~~ea~e~a~~L~~alG~~~~~ 290 (313)
...+... +..+.+.+++...|.....
T Consensus 139 G~~~~~~-~~~~~l~~~l~~~~~~~~~ 164 (293)
T TIGR00745 139 GDYVGEN-EAVEALAELLNEAGIPAEL 164 (293)
T ss_pred ecCCCch-HHHHHHHHHHHhCCCCCEe
Confidence 4332222 4455666777777755433
No 213
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.94 E-value=0.009 Score=48.09 Aligned_cols=93 Identities=23% Similarity=0.277 Sum_probs=59.1
Q ss_pred EEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hhccCCEEEEcccch
Q 021401 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLISDA 189 (313)
Q Consensus 114 IgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~i~~ADvIiLavP~~ 189 (313)
|-|+|+|.+|..+++.|++. +.++++.. .+++..+.+.+.|+..-.+...+.+. -++++|.|++++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid-~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVID-RDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEE-SSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEE-CCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 57999999999999999998 87765444 44556777788885422222333322 357899999999988
Q ss_pred hHHHHHHHHHhcCCC-CcEEEEecC
Q 021401 190 AQADNYEKIFSCMKP-NSILGLSHG 213 (313)
Q Consensus 190 a~~~vi~ei~~~mk~-gaiLid~~G 213 (313)
...-.+-..+..+.+ ..++..+..
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECC
Confidence 665444433333333 344544443
No 214
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.94 E-value=0.0049 Score=59.18 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=43.5
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHC--Ccee-c--CCCcCCHHhhhccCCEEEE
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-E--NGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~~~-~--~~~~~~~~e~i~~ADvIiL 184 (313)
|||+|||.|.+|.++|..|... |. ++.+.++........+.+. .... . .....+. +.+++||+|++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEE
Confidence 5899999999999999999988 84 5555554332221122211 1100 0 0001233 56899999999
Q ss_pred cccc
Q 021401 185 LISD 188 (313)
Q Consensus 185 avP~ 188 (313)
+.+.
T Consensus 74 ta~~ 77 (308)
T cd05292 74 TAGA 77 (308)
T ss_pred ccCC
Confidence 9875
No 215
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.93 E-value=0.0065 Score=58.74 Aligned_cols=70 Identities=19% Similarity=0.123 Sum_probs=43.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhhccCC
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSD 180 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~-------G~~~~~~~~~~~~e~i~~AD 180 (313)
+. +||+|||.|.||.+++..+... |. ++++.+...+.....+.+. +....-....+.+ .+++||
T Consensus 4 ~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~AD 75 (319)
T PTZ00117 4 KR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSD 75 (319)
T ss_pred CC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCC
Confidence 45 8999999999999999998887 73 6555544332221222211 1000000123444 789999
Q ss_pred EEEEcc
Q 021401 181 LVLLLI 186 (313)
Q Consensus 181 vIiLav 186 (313)
+|+++.
T Consensus 76 iVVita 81 (319)
T PTZ00117 76 VVVITA 81 (319)
T ss_pred EEEECC
Confidence 999998
No 216
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.90 E-value=0.0067 Score=60.14 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=57.1
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-CCc--eecCCC-cCCHHhh-hccCCEEEEcc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGF--TEENGT-LGDIYET-ISGSDLVLLLI 186 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~--~~~~~~-~~~~~e~-i~~ADvIiLav 186 (313)
|+|.|+|+|.+|..+++.|++. |+++++..+. ++..+...+ .|+ ...+.+ ...++++ +.++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~-~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTD-EERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECC-HHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 6899999999999999999998 9887655543 333444433 443 211111 1123444 78999999999
Q ss_pred cchhHHHHHHHHHhcC-CCCcEEE
Q 021401 187 SDAAQADNYEKIFSCM-KPNSILG 209 (313)
Q Consensus 187 P~~a~~~vi~ei~~~m-k~gaiLi 209 (313)
+.......+......+ +...+++
T Consensus 74 ~~~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 74 DSDETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred CChHHHHHHHHHHHHhcCCCeEEE
Confidence 9877655444333333 3333443
No 217
>PRK11579 putative oxidoreductase; Provisional
Probab=96.86 E-value=0.008 Score=58.08 Aligned_cols=79 Identities=9% Similarity=0.140 Sum_probs=52.3
Q ss_pred CEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccc
Q 021401 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (313)
Q Consensus 112 kkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~ 188 (313)
.+|||||+|.||.. .+..++.. .+++++...+.+.+. .+.+.+.. ....+.+|+++ +.|+|++++|+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~~--~~~~~~~~---~~~~~~~ell~~~~vD~V~I~tp~ 74 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDATK--VKADWPTV---TVVSEPQHLFNDPNIDLIVIPTPN 74 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHHH--HHhhCCCC---ceeCCHHHHhcCCCCCEEEEcCCc
Confidence 58999999999984 56666553 156665445554322 12223211 12468999996 57999999999
Q ss_pred hhHHHHHHHHHh
Q 021401 189 AAQADNYEKIFS 200 (313)
Q Consensus 189 ~a~~~vi~ei~~ 200 (313)
..+.++..+.+.
T Consensus 75 ~~H~~~~~~al~ 86 (346)
T PRK11579 75 DTHFPLAKAALE 86 (346)
T ss_pred HHHHHHHHHHHH
Confidence 998887765543
No 218
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.85 E-value=0.00083 Score=64.73 Aligned_cols=96 Identities=22% Similarity=0.282 Sum_probs=53.2
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHH--H-CCceecCCCcCCHHhhhccCCEEEEcc
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--A-AGFTEENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~--~-~G~~~~~~~~~~~~e~i~~ADvIiLav 186 (313)
.++++|||.|.||..+++.+...+ ++ +|.++.|..+...+.+. + .|+.. ..+.+.++++++||+|+.+|
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~v--~~~~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERAEAFAARLRDLGVPV--VAVDSAEEAVRGADIIVTAT 200 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHHHHHHHHHHCCCTCE--EEESSHHHHHTTSSEEEE--
T ss_pred CceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHHHHHHHhhccccccc--eeccchhhhcccCCEEEEcc
Confidence 379999999999999999988741 44 56666665433222222 2 23322 12568999999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021401 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~ 215 (313)
|-.....+++ .+.++||+.|.-+++..
T Consensus 201 ~s~~~~P~~~--~~~l~~g~hi~~iGs~~ 227 (313)
T PF02423_consen 201 PSTTPAPVFD--AEWLKPGTHINAIGSYT 227 (313)
T ss_dssp --SSEEESB---GGGS-TT-EEEE-S-SS
T ss_pred CCCCCCcccc--HHHcCCCcEEEEecCCC
Confidence 8665212333 24678999888776653
No 219
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.84 E-value=0.0042 Score=64.05 Aligned_cols=97 Identities=14% Similarity=0.134 Sum_probs=69.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec--CCC------------c-CCH
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT------------L-GDI 172 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~~------------~-~~~ 172 (313)
..| .++.|||.|.+|...++.++.. |.+| +..+.++...+.+++.|.... +.. . .+.
T Consensus 163 ~pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V-~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPP-AKVLVIGAGVAGLAAIGAAGSL------GAIV-RAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEE-EEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhH
Confidence 467 9999999999999999999999 9865 455555667788888886510 000 0 010
Q ss_pred --------HhhhccCCEEEEcccchh--HHHHH-HHHHhcCCCCcEEEEec
Q 021401 173 --------YETISGSDLVLLLISDAA--QADNY-EKIFSCMKPNSILGLSH 212 (313)
Q Consensus 173 --------~e~i~~ADvIiLavP~~a--~~~vi-~ei~~~mk~gaiLid~~ 212 (313)
.+.++++|+||-++.-.. ...++ ++..+.||+|.+|+|++
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 122367999999986422 34554 78889999999998775
No 220
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.83 E-value=0.0029 Score=60.22 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=62.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCC----ceecCCCcCCHHhhhccCC
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYETISGSD 180 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G----~~~~~~~~~~~~e~i~~AD 180 (313)
..+.+ +++.|||.|-+|.+++..|... |. +|.+.+|..++..+.+.+.+ ... -....+..+.++++|
T Consensus 123 ~~~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~-~~~~~~~~~~~~~aD 194 (284)
T PRK12549 123 PDASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAAR-ATAGSDLAAALAAAD 194 (284)
T ss_pred cCccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeE-EEeccchHhhhCCCC
Confidence 35778 9999999999999999999998 87 67777776555444444321 110 001224455778999
Q ss_pred EEEEcccchhHHH---HHHHHHhcCCCCcEEEEe
Q 021401 181 LVLLLISDAAQAD---NYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 181 vIiLavP~~a~~~---vi~ei~~~mk~gaiLid~ 211 (313)
+||.++|...... -+. ...++++.++.|+
T Consensus 195 iVInaTp~Gm~~~~~~~~~--~~~l~~~~~v~Di 226 (284)
T PRK12549 195 GLVHATPTGMAKHPGLPLP--AELLRPGLWVADI 226 (284)
T ss_pred EEEECCcCCCCCCCCCCCC--HHHcCCCcEEEEe
Confidence 9999998754211 011 1235666677665
No 221
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.81 E-value=0.0045 Score=59.47 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=59.8
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~-mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| +++.|||.+. +|..++..|... |..|.+...+ +.++.+.+++||+||.
T Consensus 160 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 160 VDIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVV 213 (287)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEE
Confidence 47899 9999999998 999999999988 8877655421 2367788999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~G 213 (313)
++--.. ++. .+++|+|++|+|++-
T Consensus 214 AvG~p~---~i~--~~~vk~gavVIDvGi 237 (287)
T PRK14176 214 ATGVKH---LIK--ADMVKEGAVIFDVGI 237 (287)
T ss_pred ccCCcc---ccC--HHHcCCCcEEEEecc
Confidence 775322 333 236899999999873
No 222
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.76 E-value=0.0042 Score=57.12 Aligned_cols=79 Identities=16% Similarity=0.053 Sum_probs=52.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc----------ccHHHHHHCCceec--CCCcCCHH
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE--NGTLGDIY 173 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~--~~~~~~~~ 173 (313)
.+|+| ++|+|.|+|++|..+|+.|.+. |..++...+.+. +..+...+.+-... .....+.+
T Consensus 19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (217)
T cd05211 19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE 91 (217)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcc
Confidence 57899 9999999999999999999998 987666556554 44444443332210 00011112
Q ss_pred hhh-ccCCEEEEcccchhH
Q 021401 174 ETI-SGSDLVLLLISDAAQ 191 (313)
Q Consensus 174 e~i-~~ADvIiLavP~~a~ 191 (313)
+++ .+||+++.|.+.+.+
T Consensus 92 ~l~~~~~DVlipaA~~~~i 110 (217)
T cd05211 92 AILGLDVDIFAPCALGNVI 110 (217)
T ss_pred cceeccccEEeeccccCcc
Confidence 222 389999999887654
No 223
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.76 E-value=0.014 Score=56.53 Aligned_cols=66 Identities=24% Similarity=0.201 Sum_probs=41.3
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHH----H---CC--ceecCCCcCCHHhhhccCCE
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR----A---AG--FTEENGTLGDIYETISGSDL 181 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~----~---~G--~~~~~~~~~~~~e~i~~ADv 181 (313)
+||+|||.|.||.++|..+... |+ ++++.+...+.....+. . .+ ... ....+. +.+++||+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I--~~~~d~-~~l~~aDi 77 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKV--IGTNNY-EDIAGSDV 77 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEE--EECCCH-HHhCCCCE
Confidence 7999999999999999998877 75 65444433221111111 1 11 111 012355 57899999
Q ss_pred EEEcc
Q 021401 182 VLLLI 186 (313)
Q Consensus 182 IiLav 186 (313)
||++.
T Consensus 78 VI~ta 82 (321)
T PTZ00082 78 VIVTA 82 (321)
T ss_pred EEECC
Confidence 99966
No 224
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.75 E-value=0.0034 Score=61.58 Aligned_cols=164 Identities=15% Similarity=0.131 Sum_probs=92.3
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHh-chhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021401 106 DAFNGINQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (313)
Q Consensus 106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~-~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvI 182 (313)
.+|+| ++|.|+|. |.||..+++.|.. . |. ++++..|...+....+.+.+.. ...++++++.++|+|
T Consensus 151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~~------gv~~lilv~R~~~rl~~La~el~~~----~i~~l~~~l~~aDiV 219 (340)
T PRK14982 151 IDLSK-ATVAVVGATGDIGSAVCRWLDAKT------GVAELLLVARQQERLQELQAELGGG----KILSLEEALPEADIV 219 (340)
T ss_pred cCcCC-CEEEEEccChHHHHHHHHHHHhhC------CCCEEEEEcCCHHHHHHHHHHhccc----cHHhHHHHHccCCEE
Confidence 47999 99999998 8999999999974 4 43 5666665533333334443211 134778899999999
Q ss_pred EEcccchhHHHHHHHHHhcCCCCcEEEEecCc-hhhhhhhcccCCCCCccEEE----eccCCCc----------hhHHHH
Q 021401 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGF-LLGHLQSIGLDFPKNIGVIA----VCPKGMG----------PSVRRL 247 (313)
Q Consensus 183 iLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv-~l~~~~~~~~~l~~~i~vV~----vhPn~pg----------~~~r~l 247 (313)
+.++...... +++. ..++++.+++|.+=- .+.. . .. .+++.++. .+|-... ...|..
T Consensus 220 v~~ts~~~~~-~I~~--~~l~~~~~viDiAvPRDVd~--~--v~-~~~V~v~~gG~V~~p~~vd~~l~~~v~~~~~~r~~ 291 (340)
T PRK14982 220 VWVASMPKGV-EIDP--ETLKKPCLMIDGGYPKNLDT--K--VQ-GPGIHVLKGGIVEHSLDIDWKIMEIAEMDNPQRQM 291 (340)
T ss_pred EECCcCCcCC-cCCH--HHhCCCeEEEEecCCCCCCc--c--cC-CCCEEEEeCCccccCCCcCccHHHHHhccchhhHH
Confidence 9888643211 1221 234788899988622 1110 0 01 13444433 2231111 111111
Q ss_pred HHhccc---ccCCCceEEEEeccC-CCHHHHHHHHHHHHHcCCCc
Q 021401 248 YVQGKE---INGAGINSSFAVHQD-VDGRATNVALGWSVALGSPF 288 (313)
Q Consensus 248 f~~G~e---~~g~G~~~iitp~~d-~~~ea~e~a~~L~~alG~~~ 288 (313)
|..--| --.+|..--|+-..+ .+-+.++.+.+++..-|++-
T Consensus 292 ~Ac~AEtiiL~leg~~~~fS~Gr~~i~~~~v~~i~~~a~kHGf~~ 336 (340)
T PRK14982 292 FACFAEAMLLEFEGCHTNFSWGRNQITLEKMEFIGEASVKHGFSP 336 (340)
T ss_pred HHHHHHHHHHHhcCCccCCCcCccccCHHHHHHHHHHHHHcCCcc
Confidence 110000 001233333555555 67888899999999999753
No 225
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.75 E-value=0.0045 Score=59.28 Aligned_cols=76 Identities=16% Similarity=0.135 Sum_probs=59.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| +++.|||-+ ..|..+|..|.+. |..|.+.... +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs~-------------------T~~l~~~~~~ADIvV~ 206 (281)
T PRK14183 153 IDVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHIF-------------------TKDLKAHTKKADIVIV 206 (281)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 47899 999999988 8999999999888 8776544211 1266788999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-.. ++. .+++|+|++|+|++
T Consensus 207 AvGkp~---~i~--~~~vk~gavvIDvG 229 (281)
T PRK14183 207 GVGKPN---LIT--EDMVKEGAIVIDIG 229 (281)
T ss_pred ecCccc---ccC--HHHcCCCcEEEEee
Confidence 997543 333 24578999999986
No 226
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.74 E-value=0.0073 Score=55.63 Aligned_cols=82 Identities=18% Similarity=0.107 Sum_probs=55.0
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH-HCCc--eecCCC-cCCHHhh-hccCCEEEEcc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGF--TEENGT-LGDIYET-ISGSDLVLLLI 186 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~--~~~~~~-~~~~~e~-i~~ADvIiLav 186 (313)
|+|.|||+|.+|.++|+.|.+. |++|++.++..+...+.+. +.+. +..+.+ ...+.++ +.++|+++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 6899999999999999999999 9998766665443333122 2332 211111 1123344 67889999999
Q ss_pred cchhHHHHHHHHH
Q 021401 187 SDAAQADNYEKIF 199 (313)
Q Consensus 187 P~~a~~~vi~ei~ 199 (313)
..+.+.-++-.+.
T Consensus 75 ~~d~~N~i~~~la 87 (225)
T COG0569 75 GNDEVNSVLALLA 87 (225)
T ss_pred CCCHHHHHHHHHH
Confidence 9988777665444
No 227
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=96.68 E-value=0.0095 Score=58.35 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=57.0
Q ss_pred EEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH-HHHHHCCceec-----------CC---CcCCHHhhhcc
Q 021401 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEE-----------NG---TLGDIYETISG 178 (313)
Q Consensus 114 IgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~-----------~~---~~~~~~e~i~~ 178 (313)
|||+|+|.||..+++.+.+. .+++++...+.+++.. ..|...|+..- +. ...++++++.+
T Consensus 1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 68999999999999998754 2677665555443321 33333332110 00 02368899999
Q ss_pred CCEEEEcccchhHHHHHHHHHhcCCCCcEEE
Q 021401 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (313)
Q Consensus 179 ADvIiLavP~~a~~~vi~ei~~~mk~gaiLi 209 (313)
+|+|+.|+|......-.+ ....++++++++
T Consensus 76 vDiVve~Tp~~~~~~na~-~~~~~GakaVl~ 105 (333)
T TIGR01546 76 VDIVVDATPGGIGAKNKP-LYEKAGVKAIFQ 105 (333)
T ss_pred CCEEEECCCCCCChhhHH-HHHhCCcCEEEE
Confidence 999999999876644333 334466666654
No 228
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.67 E-value=0.0058 Score=59.00 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| |++.|||-+ .+|..++..|.+. |..|.+.-.+ +.++++.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIs 207 (297)
T PRK14186 154 IDIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVA 207 (297)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999988 8877554221 2367788999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~G 213 (313)
++.-.. ++. .+++|+|++|+|++-
T Consensus 208 AvGkp~---~i~--~~~ik~gavVIDvGi 231 (297)
T PRK14186 208 AAGRPN---LIG--AEMVKPGAVVVDVGI 231 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEecc
Confidence 998543 343 346799999999873
No 229
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.67 E-value=0.0057 Score=58.70 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=59.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|.| |++.|||-+ .+|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 206 (284)
T PRK14170 153 TQIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHSR-------------------TKDLPQVAKEADILVV 206 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37999 999999966 7899999999888 8776554221 2367888999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-.. ++. .+++|+|++|+|++
T Consensus 207 AvG~~~---~i~--~~~vk~GavVIDvG 229 (284)
T PRK14170 207 ATGLAK---FVK--KDYIKPGAIVIDVG 229 (284)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 998544 333 24578999999986
No 230
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.67 E-value=0.0069 Score=52.87 Aligned_cols=84 Identities=17% Similarity=0.135 Sum_probs=56.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccCCEEE
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~i~~ADvIi 183 (313)
.-+|+| ++|.|||.|.+|...++.|.+. |.+|.+.... ... ...+.+ +......+ . ++-+.++|+|+
T Consensus 8 ~l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~--~~~-~l~~l~~i~~~~~~~-~-~~dl~~a~lVi 75 (157)
T PRK06719 8 MFNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPE--ICK-EMKELPYITWKQKTF-S-NDDIKDAHLIY 75 (157)
T ss_pred EEEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCc--cCH-HHHhccCcEEEeccc-C-hhcCCCceEEE
Confidence 369999 9999999999999999999998 9887666322 112 222222 11101111 1 23478999999
Q ss_pred EcccchhHHHHHHHHHh
Q 021401 184 LLISDAAQADNYEKIFS 200 (313)
Q Consensus 184 LavP~~a~~~vi~ei~~ 200 (313)
.++.+.+....+.+...
T Consensus 76 aaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 76 AATNQHAVNMMVKQAAH 92 (157)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 99999887776655443
No 231
>PRK10206 putative oxidoreductase; Provisional
Probab=96.66 E-value=0.0096 Score=57.89 Aligned_cols=82 Identities=12% Similarity=0.157 Sum_probs=53.0
Q ss_pred CEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccc
Q 021401 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (313)
Q Consensus 112 kkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~ 188 (313)
.+|||||+|.+++- .+..+.... .+.++....+++.+..+.+.+.+... ...+.+|+++ +.|+|++++|+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~----~~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRK----DSWHVAHIFRRHAKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCC----CCEEEEEEEcCChhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCCc
Confidence 58999999998753 345443320 14566544555443334455555321 2468999995 57999999999
Q ss_pred hhHHHHHHHHHh
Q 021401 189 AAQADNYEKIFS 200 (313)
Q Consensus 189 ~a~~~vi~ei~~ 200 (313)
..+.++..+.+.
T Consensus 75 ~~H~~~~~~al~ 86 (344)
T PRK10206 75 DSHFEYAKRALE 86 (344)
T ss_pred hHHHHHHHHHHH
Confidence 999887765543
No 232
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.66 E-value=0.0089 Score=56.90 Aligned_cols=66 Identities=29% Similarity=0.315 Sum_probs=39.4
Q ss_pred EEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHH---HCC-ceecC---CCcCCHHhhhccCCEEEEc
Q 021401 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAG-FTEEN---GTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 114 IgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~---~~G-~~~~~---~~~~~~~e~i~~ADvIiLa 185 (313)
|+|||.|.||..+|..+... |+ +|++.+...+.....+. ... ..... ....+ .+.+++||+||++
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d-~~~l~dADiVIit 73 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND-YEDIAGSDVVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC-HHHhCCCCEEEEe
Confidence 68999999999999998876 65 76666544322111111 110 00000 01134 4568999999997
Q ss_pred c
Q 021401 186 I 186 (313)
Q Consensus 186 v 186 (313)
.
T Consensus 74 ~ 74 (300)
T cd01339 74 A 74 (300)
T ss_pred c
Confidence 7
No 233
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=96.66 E-value=0.0056 Score=58.63 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=60.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|.| +++.|||-+ ..|..+++.|... +..|.+.... +.++.+.+++||+|+.
T Consensus 152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~-------------------T~~l~~~~k~ADIvv~ 205 (283)
T COG0190 152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSR-------------------TKDLASITKNADIVVV 205 (283)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCC-------------------CCCHHHHhhhCCEEEE
Confidence 47899 999999988 5689999999988 8877654322 1267788999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~G 213 (313)
++--.. ++. .+++|+|++|+|++-
T Consensus 206 AvG~p~---~i~--~d~vk~gavVIDVGi 229 (283)
T COG0190 206 AVGKPH---FIK--ADMVKPGAVVIDVGI 229 (283)
T ss_pred ecCCcc---ccc--cccccCCCEEEecCC
Confidence 997543 233 567899999999974
No 234
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=96.66 E-value=0.0057 Score=59.07 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| +++.|||-+ .+|..++..|.+. |..|.+...+ +.++++.+++||+||.
T Consensus 163 i~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs~-------------------T~nl~~~~~~ADIvv~ 216 (299)
T PLN02516 163 IPIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHSR-------------------TPDPESIVREADIVIA 216 (299)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999966 7899999999888 8777655221 2367889999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-. .++. .+++|+|++|+|++
T Consensus 217 AvGk~---~~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 217 AAGQA---MMIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred cCCCc---CccC--HHHcCCCCEEEEee
Confidence 99753 3444 24679999999987
No 235
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.65 E-value=0.0061 Score=58.57 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=59.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| +++.|||-+ .+|..++..|.+. +..|.+...+ +.++++.+++||+||.
T Consensus 151 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIs 204 (287)
T PRK14173 151 IPLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVV 204 (287)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 8899999999887 7776544321 2367788999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-.. ++. .+++|+|++|+|++
T Consensus 205 AvGkp~---~i~--~~~vk~GavVIDVG 227 (287)
T PRK14173 205 AVGRPH---LIT--PEMVRPGAVVVDVG 227 (287)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 997543 343 35679999999986
No 236
>PRK04148 hypothetical protein; Provisional
Probab=96.65 E-value=0.022 Score=48.94 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=72.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee-cCCCcCCHHhhhccCCEEEEcc
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~-~~~~~~~~~e~i~~ADvIiLav 186 (313)
.++ ++|.+||+| -|.++|+.|.+. |++| ++.|.++...+.+++.+... .++.+....+.-+++|+|--.=
T Consensus 15 ~~~-~kileIG~G-fG~~vA~~L~~~------G~~V-iaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 15 GKN-KKIVELGIG-FYFKVAKKLKES------GFDV-IVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred ccC-CEEEEEEec-CCHHHHHHHHHC------CCEE-EEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 367 899999999 899999999998 9986 56677666677777776421 1233345567889999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecC
Q 021401 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLid~~G 213 (313)
||.+...-+-+++..++-+-++.-.+|
T Consensus 86 pp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 86 PPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 998887777777777766666654444
No 237
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.63 E-value=0.0066 Score=58.26 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| |++.|||-+ .+|..++..|.+. |..|.+...+ +.++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIs 208 (284)
T PRK14177 155 IDVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVG 208 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 8899999999988 8777654321 2367788999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-.. ++. .+++|+|++|+|++
T Consensus 209 AvGk~~---~i~--~~~ik~gavVIDvG 231 (284)
T PRK14177 209 AVGKPE---FIK--ADWISEGAVLLDAG 231 (284)
T ss_pred eCCCcC---ccC--HHHcCCCCEEEEec
Confidence 997543 333 35679999999986
No 238
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.62 E-value=0.0098 Score=59.47 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=60.6
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc---------------HHHHHHCCcee-cCCCcCCHHhh
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---------------FAEARAAGFTE-ENGTLGDIYET 175 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s---------------~~~A~~~G~~~-~~~~~~~~~e~ 175 (313)
|+|.|||.|-.|-..+..|.+. |++|+.. +.++.- ++...+.+... +-..+++.+++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~------GHeVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a 73 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL------GHEVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEA 73 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc------CCeEEEE-eCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHH
Confidence 7899999999999999999999 9987554 433211 11111111110 00014578889
Q ss_pred hccCCEEEEcccch---------hHH-HHHHHHHhcCCCCcEEEE
Q 021401 176 ISGSDLVLLLISDA---------AQA-DNYEKIFSCMKPNSILGL 210 (313)
Q Consensus 176 i~~ADvIiLavP~~---------a~~-~vi~ei~~~mk~gaiLid 210 (313)
++++|+++|++|-. .+. .+.+++.++++..++|+.
T Consensus 74 ~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~ 118 (414)
T COG1004 74 VKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVI 118 (414)
T ss_pred HhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 99999999998632 122 255688898887776654
No 239
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.62 E-value=0.0067 Score=58.06 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=59.3
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| |++.|||-+ .+|..++..|.+. |..|.+...+ +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIs 207 (278)
T PRK14172 154 IDIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVV 207 (278)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 8899999999988 8877554321 2367788999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-.. ++. .+++|+|++|+|++
T Consensus 208 AvGkp~---~i~--~~~ik~gavVIDvG 230 (278)
T PRK14172 208 AIGRPK---FID--EEYVKEGAIVIDVG 230 (278)
T ss_pred cCCCcC---ccC--HHHcCCCcEEEEee
Confidence 998544 333 24578999999985
No 240
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.61 E-value=0.0081 Score=48.52 Aligned_cols=78 Identities=18% Similarity=0.167 Sum_probs=50.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
-+|+| +++.|||.|.+|..=++.|.+. |.+|.+..... .......-+.. ...++.+.++|+|+++
T Consensus 3 l~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~---~~~~~~i~~~~-----~~~~~~l~~~~lV~~a 67 (103)
T PF13241_consen 3 LDLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI---EFSEGLIQLIR-----REFEEDLDGADLVFAA 67 (103)
T ss_dssp E--TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE---HHHHTSCEEEE-----SS-GGGCTTESEEEE-
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch---hhhhhHHHHHh-----hhHHHHHhhheEEEec
Confidence 46899 9999999999999999999999 98877665442 11111112332 2445678999999999
Q ss_pred ccchhHHHHHHHH
Q 021401 186 ISDAAQADNYEKI 198 (313)
Q Consensus 186 vP~~a~~~vi~ei 198 (313)
+.+....+.+.+.
T Consensus 68 t~d~~~n~~i~~~ 80 (103)
T PF13241_consen 68 TDDPELNEAIYAD 80 (103)
T ss_dssp SS-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9998776654433
No 241
>PRK06199 ornithine cyclodeaminase; Validated
Probab=96.60 E-value=0.0041 Score=61.74 Aligned_cols=97 Identities=20% Similarity=0.190 Sum_probs=61.4
Q ss_pred CCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHC-----CceecCCCcCCHHhhhccCCEEE
Q 021401 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----GFTEENGTLGDIYETISGSDLVL 183 (313)
Q Consensus 110 GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~-----G~~~~~~~~~~~~e~i~~ADvIi 183 (313)
+.++++|||.|.|+..+.+.+.... ..+ +|.++.|..++..+.+.+. |+.+ -..+.+.++++++||+|+
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~----~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~-v~~~~s~~eav~~ADIVv 228 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVC----PGIDTIKIKGRGQKSLDSFATWVAETYPQITN-VEVVDSIEEVVRGSDIVT 228 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhc----CCccEEEEECCCHHHHHHHHHHHHHhcCCCce-EEEeCCHHHHHcCCCEEE
Confidence 4489999999999999999987741 124 5666666644333322221 3210 012468999999999999
Q ss_pred EcccchhH----HHHHHHHHhcCCCCcEEEEecC
Q 021401 184 LLISDAAQ----ADNYEKIFSCMKPNSILGLSHG 213 (313)
Q Consensus 184 LavP~~a~----~~vi~ei~~~mk~gaiLid~~G 213 (313)
.+|+-... ..+++ .+++|||+.|.-.+.
T Consensus 229 taT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 229 YCNSGETGDPSTYPYVK--REWVKPGAFLLMPAA 260 (379)
T ss_pred EccCCCCCCCCcCcEec--HHHcCCCcEEecCCc
Confidence 99974321 12443 235688987764443
No 242
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.58 E-value=0.0072 Score=57.93 Aligned_cols=77 Identities=13% Similarity=0.177 Sum_probs=59.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| +++.|||-+ .+|..+|..|.+. |..|.+...+ +.++.+.+++||+||.
T Consensus 152 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 205 (282)
T PRK14169 152 IDVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVV 205 (282)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999965 7899999999888 8777654321 2267788999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~G 213 (313)
++.-.. ++. .+++|+|++|+|++-
T Consensus 206 AvG~p~---~i~--~~~vk~GavVIDvGi 229 (282)
T PRK14169 206 AVGVPH---FIG--ADAVKPGAVVIDVGI 229 (282)
T ss_pred ccCCcC---ccC--HHHcCCCcEEEEeec
Confidence 998544 333 246799999999873
No 243
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.58 E-value=0.018 Score=47.76 Aligned_cols=85 Identities=16% Similarity=0.145 Sum_probs=56.6
Q ss_pred CEEEEEc----ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021401 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (313)
Q Consensus 112 kkIgIIG----~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP 187 (313)
|+|+||| -+..|.-+.++|++. |++|+-.+.+..+ -.|... ..++.|.-...|++++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~~~------i~G~~~----y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKGGE------ILGIKC----YPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTCSE------ETTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCceE------ECcEEe----eccccCCCCCCCEEEEEcC
Confidence 6899999 788999999999998 9886544433211 134442 5678874489999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecC
Q 021401 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (313)
Q Consensus 188 ~~a~~~vi~ei~~~mk~gaiLid~~G 213 (313)
+....++++++... ..+.+++..+.
T Consensus 65 ~~~~~~~v~~~~~~-g~~~v~~~~g~ 89 (116)
T PF13380_consen 65 PDKVPEIVDEAAAL-GVKAVWLQPGA 89 (116)
T ss_dssp HHHHHHHHHHHHHH-T-SEEEE-TTS
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEcch
Confidence 99999999987654 34455555553
No 244
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.53 E-value=0.0081 Score=57.66 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=58.6
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+++| +++.|||-+ .+|..+|..|.+. +..|.+...+ ..++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs~-------------------t~~l~~~~~~ADIvI~ 207 (284)
T PRK14190 154 IDISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHSK-------------------TKNLAELTKQADILIV 207 (284)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 47899 999999954 8999999999887 8777654211 2267789999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-.. ++. .+++|+|++|+|++
T Consensus 208 AvG~p~---~i~--~~~ik~gavVIDvG 230 (284)
T PRK14190 208 AVGKPK---LIT--ADMVKEGAVVIDVG 230 (284)
T ss_pred ecCCCC---cCC--HHHcCCCCEEEEee
Confidence 996443 343 23468999999986
No 245
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.51 E-value=0.0085 Score=57.45 Aligned_cols=76 Identities=18% Similarity=0.120 Sum_probs=58.8
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+++| +++.|||-+ .+|..+|..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIs 206 (282)
T PRK14166 153 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37899 999999965 7899999999887 7776544321 2267788999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-.. ++. .+++|+|++|+|++
T Consensus 207 AvGkp~---~i~--~~~vk~GavVIDvG 229 (282)
T PRK14166 207 AAGCVN---LLR--SDMVKEGVIVVDVG 229 (282)
T ss_pred cCCCcC---ccC--HHHcCCCCEEEEec
Confidence 997543 333 24578999999986
No 246
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.48 E-value=0.013 Score=56.66 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=44.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCC----ceecCCCcCCHHhhhccCCEE
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYETISGSDLV 182 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G----~~~~~~~~~~~~e~i~~ADvI 182 (313)
.| +||+|||.|.+|.++|..|... |+ ++.+.+.........+.+.. +........+..+.+++||+|
T Consensus 5 ~~-~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adiv 77 (315)
T PRK00066 5 QH-NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLV 77 (315)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEE
Confidence 56 8999999999999999999888 76 55555543332222222211 000000011234568999999
Q ss_pred EEccc
Q 021401 183 LLLIS 187 (313)
Q Consensus 183 iLavP 187 (313)
|++.-
T Consensus 78 Iitag 82 (315)
T PRK00066 78 VITAG 82 (315)
T ss_pred EEecC
Confidence 99653
No 247
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.46 E-value=0.0098 Score=57.04 Aligned_cols=76 Identities=14% Similarity=0.123 Sum_probs=59.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| +++.|||-+ .+|..++..|.+. |..|.+...+ +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIs 207 (282)
T PRK14180 154 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 207 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEE
Confidence 37999 999999965 7899999999888 8777554321 1267788999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-.. ++. .+++|+|++|+|++
T Consensus 208 AvGkp~---~i~--~~~vk~gavVIDvG 230 (282)
T PRK14180 208 AVGKPN---FIT--ADMVKEGAVVIDVG 230 (282)
T ss_pred ccCCcC---cCC--HHHcCCCcEEEEec
Confidence 998544 343 25678999999986
No 248
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.46 E-value=0.0095 Score=57.29 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=58.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+++| |++.|||-+ .+|..++..|.+. +..|.+...+ ..++.+.+++||+||.
T Consensus 155 i~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs~-------------------T~~L~~~~~~ADIvV~ 208 (288)
T PRK14171 155 PNLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHSK-------------------THNLSSITSKADIVVA 208 (288)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37899 999999965 7899999999888 8776554321 2367888999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-. +++. .+++|+|++|+|++
T Consensus 209 AvGkp---~~i~--~~~vk~GavVIDvG 231 (288)
T PRK14171 209 AIGSP---LKLT--AEYFNPESIVIDVG 231 (288)
T ss_pred ccCCC---CccC--HHHcCCCCEEEEee
Confidence 99743 2343 24578999999986
No 249
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.46 E-value=0.0094 Score=57.47 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=59.0
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|.| |++.|||-+ .+|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 156 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVs 209 (294)
T PRK14187 156 RNLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVA 209 (294)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999965 8899999999988 8776544321 2267789999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-.. ++. .+++|+|++|+|++
T Consensus 210 AvGkp~---~i~--~~~ik~gaiVIDVG 232 (294)
T PRK14187 210 AVGIPN---FVK--YSWIKKGAIVIDVG 232 (294)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 998543 233 24578999999985
No 250
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.45 E-value=0.0082 Score=59.36 Aligned_cols=76 Identities=18% Similarity=0.186 Sum_probs=58.8
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| |++.|||-+ .+|..++..|.+. +..|.+.-.+ +.++.+.+++||+||.
T Consensus 227 i~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs~-------------------T~nl~~~~r~ADIVIs 280 (364)
T PLN02616 227 VEIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSR-------------------TKNPEEITREADIIIS 280 (364)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999888 7776554221 2367889999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-.. ++. .+++|+|++|+|++
T Consensus 281 AvGkp~---~i~--~d~vK~GAvVIDVG 303 (364)
T PLN02616 281 AVGQPN---MVR--GSWIKPGAVVIDVG 303 (364)
T ss_pred cCCCcC---cCC--HHHcCCCCEEEecc
Confidence 997543 333 24579999999986
No 251
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.44 E-value=0.0049 Score=55.97 Aligned_cols=81 Identities=11% Similarity=0.199 Sum_probs=51.5
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcccch
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~--ADvIiLavP~~ 189 (313)
.+|+|||+|.+|..+++.+... ..|++++...+.++...... -.|+.. ....++++++++ .|.|++++|..
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~----~~g~~ivgv~D~d~~~~~~~-i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE----KRGFKIVAAFDVDPEKIGTK-IGGIPV--YHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc----cCCcEEEEEEECChhhcCCE-eCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence 7899999999999999864321 12777665555543211100 123211 113356777754 99999999999
Q ss_pred hHHHHHHHHH
Q 021401 190 AQADNYEKIF 199 (313)
Q Consensus 190 a~~~vi~ei~ 199 (313)
...++.+.+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 8877666544
No 252
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.44 E-value=0.015 Score=60.87 Aligned_cols=91 Identities=14% Similarity=0.247 Sum_probs=60.7
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hhccCCEEEEccc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLIS 187 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~i~~ADvIiLavP 187 (313)
..|-|+|+|.+|+.+++.|++. |+++++ .+++++..+.+++.|...--+...+.+- =+++||+|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvv-ID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN------KMRITV-LERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC------CCCEEE-EECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 5789999999999999999998 988654 4556666777888885321122223321 2578999999999
Q ss_pred chhHHHHHHHHHhcCCCC-cEEE
Q 021401 188 DAAQADNYEKIFSCMKPN-SILG 209 (313)
Q Consensus 188 ~~a~~~vi~ei~~~mk~g-aiLi 209 (313)
+......+-.....+.|+ .++.
T Consensus 474 d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 474 EPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred CHHHHHHHHHHHHHHCCCCeEEE
Confidence 987765443333333343 3443
No 253
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.43 E-value=0.011 Score=56.81 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=58.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+++| |++.|||-+ .+|..++..|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs~-------------------T~nl~~~~~~ADIvI~ 206 (282)
T PRK14182 153 VDPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHSR-------------------TADLAGEVGRADILVA 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999965 8899999999887 7776554221 2367788999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-. +++. .+++|+|++|+|++
T Consensus 207 AvGk~---~~i~--~~~ik~gaiVIDvG 229 (282)
T PRK14182 207 AIGKA---ELVK--GAWVKEGAVVIDVG 229 (282)
T ss_pred ecCCc---CccC--HHHcCCCCEEEEee
Confidence 99742 3444 24578999999986
No 254
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.42 E-value=0.0071 Score=57.43 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=53.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhhccCCEE
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLV 182 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~---~~~~e~i~~ADvI 182 (313)
+++| +++.|||.|-+|.+++..|.+. |. ++.+.+|..++..+.+.+.+....-... .+..+.+.++|+|
T Consensus 122 ~~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEE
Confidence 5788 9999999999999999999998 87 5778887755555555443211000001 1233567889999
Q ss_pred EEcccchh
Q 021401 183 LLLISDAA 190 (313)
Q Consensus 183 iLavP~~a 190 (313)
|-++|...
T Consensus 195 InaTp~g~ 202 (282)
T TIGR01809 195 VSTVPADV 202 (282)
T ss_pred EECCCCCC
Confidence 99999764
No 255
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.41 E-value=0.01 Score=56.97 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=58.0
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHh--chhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~--~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvI 182 (313)
.+|+| +++.|||-+ .+|..++..|.+ . +..|.+...+ +.++.+.+++||+|
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIv 207 (284)
T PRK14193 154 VELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADII 207 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEE
Confidence 47899 999999955 889999999976 5 6666544221 23678899999999
Q ss_pred EEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 183 iLavP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
|.++.-.. ++. .+++|+|++|+|++
T Consensus 208 V~AvGkp~---~i~--~~~ik~GavVIDvG 232 (284)
T PRK14193 208 VAAAGVAH---LVT--ADMVKPGAAVLDVG 232 (284)
T ss_pred EEecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 99998543 343 24679999999986
No 256
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.39 E-value=0.01 Score=58.43 Aligned_cols=76 Identities=18% Similarity=0.092 Sum_probs=58.6
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| |++.|||-+ .+|..+|..|.+. +..|.+.-.+ +.++.+.+++||+||.
T Consensus 210 i~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIs 263 (345)
T PLN02897 210 VEIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIA 263 (345)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEE
Confidence 47999 999999965 7899999999887 7776544321 1267788999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-.. ++. .+++|+|++|+|++
T Consensus 264 AvGkp~---~v~--~d~vk~GavVIDVG 286 (345)
T PLN02897 264 AAGIPN---LVR--GSWLKPGAVVIDVG 286 (345)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEcc
Confidence 998543 233 24578999999986
No 257
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.37 E-value=0.012 Score=58.43 Aligned_cols=68 Identities=21% Similarity=0.169 Sum_probs=43.6
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a 190 (313)
++|.|||+|.+|.|+|+.|++. |++|...+ .+...... .+..++ ......+...+++|+||.+.+...
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D-~~~~~~~~---~~~~~~-~~~~~~~~~~~~~dlvV~s~gi~~ 71 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK------GVYVIGVD-KSLEALQS---CPYIHE-RYLENAEEFPEQVDLVVRSPGIKK 71 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC------CCEEEEEe-CCccccch---hHHHhh-hhcCCcHHHhcCCCEEEECCCCCC
Confidence 8999999999999999999999 98865444 43322211 111110 001133344578999999876543
No 258
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.32 E-value=0.02 Score=59.10 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=54.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hhccCCE
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDL 181 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~i~~ADv 181 (313)
.++++ .|-|+|+|.+|..+++.|++. |+++++.+ ++++..+.+++.|+..-.+...+.+- -++++|.
T Consensus 414 ~~~~~--hiiI~G~G~~G~~la~~L~~~------g~~vvvId-~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 414 VDICN--HALLVGYGRVGSLLGEKLLAA------GIPLVVIE-TSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred cccCC--CEEEECCChHHHHHHHHHHHC------CCCEEEEE-CCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCE
Confidence 34444 678999999999999999999 98875554 55566677777775321122223221 2468999
Q ss_pred EEEcccchhHHH
Q 021401 182 VLLLISDAAQAD 193 (313)
Q Consensus 182 IiLavP~~a~~~ 193 (313)
++++++++....
T Consensus 485 viv~~~~~~~~~ 496 (558)
T PRK10669 485 LLLTIPNGYEAG 496 (558)
T ss_pred EEEEcCChHHHH
Confidence 999999876543
No 259
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.32 E-value=0.0081 Score=57.71 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=57.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHh----chhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCC
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRD----SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~----~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~AD 180 (313)
.+++| |++.|||-+ .+|..++..|.+ . +..|.+...+ ..++.+.+++||
T Consensus 153 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~------~AtVt~~hs~-------------------t~~l~~~~~~AD 206 (286)
T PRK14184 153 LSPAG-KKAVVVGRSNIVGKPLALMLGAPGKFA------NATVTVCHSR-------------------TPDLAEECREAD 206 (286)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhCCcccC------CCEEEEEeCC-------------------chhHHHHHHhCC
Confidence 47899 999999965 789999999987 4 5566544321 126778999999
Q ss_pred EEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
+||.++.-.. ++. .+++|+|++|+|++
T Consensus 207 IVI~AvG~p~---li~--~~~vk~GavVIDVG 233 (286)
T PRK14184 207 FLFVAIGRPR---FVT--ADMVKPGAVVVDVG 233 (286)
T ss_pred EEEEecCCCC---cCC--HHHcCCCCEEEEee
Confidence 9999996432 343 13459999999986
No 260
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.29 E-value=0.021 Score=53.22 Aligned_cols=65 Identities=28% Similarity=0.324 Sum_probs=41.3
Q ss_pred EEEEcc-cchHHHHHHHHHhchhhhcCC----cEEEEEecCCcccHHHHHH------C--CceecCCCcCCHHhhhccCC
Q 021401 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARA------A--GFTEENGTLGDIYETISGSD 180 (313)
Q Consensus 114 IgIIG~-G~mG~AlA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~A~~------~--G~~~~~~~~~~~~e~i~~AD 180 (313)
|+|||. |.+|..++..|... | .++.+.+.........+.+ . .... ....+.++.+++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i--~~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKV--SITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEE--EECCchHHHhCCCC
Confidence 689999 99999999999887 6 4665555433222111111 1 1111 01235578999999
Q ss_pred EEEEcc
Q 021401 181 LVLLLI 186 (313)
Q Consensus 181 vIiLav 186 (313)
+|+++.
T Consensus 73 iVv~t~ 78 (263)
T cd00650 73 VVIITA 78 (263)
T ss_pred EEEECC
Confidence 999955
No 261
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.26 E-value=0.04 Score=50.17 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=54.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
-+|.| +++.|||.|.+|..-++.|.+. |.+|.+....-.+......+.| +.-..+.. . .+.+.++|+|++
T Consensus 5 l~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~-~-~~dl~~~~lVi~ 75 (205)
T TIGR01470 5 ANLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARCF-D-ADILEGAFLVIA 75 (205)
T ss_pred EEcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCC-C-HHHhCCcEEEEE
Confidence 57999 9999999999999999999999 9887766544322232333333 22111111 2 345789999999
Q ss_pred cccchhHHH
Q 021401 185 LISDAAQAD 193 (313)
Q Consensus 185 avP~~a~~~ 193 (313)
++.+.....
T Consensus 76 at~d~~ln~ 84 (205)
T TIGR01470 76 ATDDEELNR 84 (205)
T ss_pred CCCCHHHHH
Confidence 998876554
No 262
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.17 E-value=0.011 Score=56.67 Aligned_cols=95 Identities=19% Similarity=0.182 Sum_probs=66.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCc----eecCCCcCCHHhhhccCC
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF----TEENGTLGDIYETISGSD 180 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~----~~~~~~~~~~~e~i~~AD 180 (313)
.+.+| +++.|+|.|=.+.+++..|.+. |. ++.+.+|..++..+.+...+- .. .....+. +...++|
T Consensus 122 ~~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~-~~~~~~~-~~~~~~d 192 (283)
T COG0169 122 VDVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVE-AAALADL-EGLEEAD 192 (283)
T ss_pred cccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcccccc-ccccccc-ccccccC
Confidence 56678 9999999999999999999999 96 688899887666666655441 10 0001122 2222699
Q ss_pred EEEEcccchhHHH----HHHHHHhcCCCCcEEEEe
Q 021401 181 LVLLLISDAAQAD----NYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 181 vIiLavP~~a~~~----vi~ei~~~mk~gaiLid~ 211 (313)
+||-+||...... .+. ...++++.++.|+
T Consensus 193 liINaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~ 225 (283)
T COG0169 193 LLINATPVGMAGPEGDSPVP--AELLPKGAIVYDV 225 (283)
T ss_pred EEEECCCCCCCCCCCCCCCc--HHhcCcCCEEEEe
Confidence 9999999876543 222 4567788888865
No 263
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.17 E-value=0.0082 Score=47.85 Aligned_cols=79 Identities=13% Similarity=0.161 Sum_probs=50.6
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcccch
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~--ADvIiLavP~~ 189 (313)
.++.|+|.|.+|.+++....+.. |+.+....+.+++... ..-.|+.. ..+++++.+. .|+-+|++|..
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~-----g~~i~~~~dv~~~~~G-~~i~gipV----~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMR-----GFGIVAVFDVDPEKIG-KEIGGIPV----YGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHH-----CECEEEEEEECTTTTT-SEETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHHc-----CCCCEEEEEcCCCccC-cEECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence 57999999999999986655431 5544444443332111 01124442 3367776666 99999999999
Q ss_pred hHHHHHHHHHh
Q 021401 190 AQADNYEKIFS 200 (313)
Q Consensus 190 a~~~vi~ei~~ 200 (313)
...+...++.+
T Consensus 74 ~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 AAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888876654
No 264
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=96.17 E-value=0.023 Score=53.29 Aligned_cols=107 Identities=14% Similarity=0.198 Sum_probs=77.1
Q ss_pred HCCceecCCCcCCHHhhhccCCEEEEcccchh-HHHHHHHHHhcCCCCcEEEEecCchhhhhhh-cccCCCCCccEEEec
Q 021401 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLGHLQS-IGLDFPKNIGVIAVC 236 (313)
Q Consensus 159 ~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a-~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~-~~~~l~~~i~vV~vh 236 (313)
+.|+.. .++..|+++++|+||-=.|-.. +.++++++.+.+++|+||++.+-+......+ ....-++++++-..|
T Consensus 124 d~g~~v----ttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthactipttkf~kifed~gredlnvtsyh 199 (343)
T COG4074 124 DMGIVV----TTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSYH 199 (343)
T ss_pred HceeEE----ecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeecccchHHHHHHHHHhCccccceeccC
Confidence 466664 4577899999999999888654 6789999999999999999988764321111 001225689999999
Q ss_pred cCCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHc
Q 021401 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL 284 (313)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~al 284 (313)
| +..+++ .| -++..++.+++++++.+.+|.+.-
T Consensus 200 p-g~vpem-----kg---------qvyiaegyaseeavn~lyelg~ka 232 (343)
T COG4074 200 P-GTVPEM-----KG---------QVYIAEGYASEEAVNALYELGEKA 232 (343)
T ss_pred C-CCCccc-----cC---------cEEEecccccHHHHHHHHHHHHHh
Confidence 9 556664 23 235667788999999887776543
No 265
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.15 E-value=0.017 Score=55.66 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=57.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCC----cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCC
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~AD 180 (313)
.+|+| |++.|||-+ .+|..++..|.+. | ..|.+...+ ..++.+.+++||
T Consensus 153 i~l~G-K~vvViGrS~iVGkPla~lL~~~------~~~~~aTVtvchs~-------------------T~nl~~~~~~AD 206 (293)
T PRK14185 153 IETSG-KKCVVLGRSNIVGKPMAQLMMQK------AYPGDCTVTVCHSR-------------------SKNLKKECLEAD 206 (293)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHcC------CCCCCCEEEEecCC-------------------CCCHHHHHhhCC
Confidence 47899 999999965 7899999999775 4 344433211 236788899999
Q ss_pred EEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
+||.++.-.. ++. .+++|+|++|+|++
T Consensus 207 IvIsAvGkp~---~i~--~~~vk~gavVIDvG 233 (293)
T PRK14185 207 IIIAALGQPE---FVK--ADMVKEGAVVIDVG 233 (293)
T ss_pred EEEEccCCcC---ccC--HHHcCCCCEEEEec
Confidence 9999998544 333 35679999999986
No 266
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.12 E-value=0.052 Score=53.80 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=59.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC--CceecCCCcCCHH----hhhccCCE
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDL 181 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~~~~~~~~~~~----e~i~~ADv 181 (313)
+.. ++|.|+|+|.+|..+++.|.+. |+++++.... ++..+...+. ++..-.+...+.+ .-++++|.
T Consensus 229 ~~~-~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~-~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 229 KPV-KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERD-PERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCE
Confidence 445 8999999999999999999998 9887655544 4444444432 3211011222332 23578999
Q ss_pred EEEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021401 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~ 211 (313)
|++++++....-++..+...+.+..++.-+
T Consensus 301 vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 301 FIALTNDDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred EEECCCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence 999988765433333444445555555433
No 267
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.10 E-value=0.018 Score=55.61 Aligned_cols=80 Identities=20% Similarity=0.194 Sum_probs=56.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|.| |++.|||-+ .+|..++..|.+.+.. .+..|.+.... ..++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~--~~atVt~~hs~-------------------t~~l~~~~~~ADIvI~ 212 (295)
T PRK14174 155 IETKG-KHCVVVGRSNIVGKPMANLMLQKLKE--SNCTVTICHSA-------------------TKDIPSYTRQADILIA 212 (295)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHhcccc--CCCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 47899 999999965 7899999998761100 05555443321 1257789999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-. .++. .+++|+|++|+|++
T Consensus 213 Avg~~---~li~--~~~vk~GavVIDVg 235 (295)
T PRK14174 213 AIGKA---RFIT--ADMVKPGAVVIDVG 235 (295)
T ss_pred ecCcc---CccC--HHHcCCCCEEEEee
Confidence 99544 3444 13359999999986
No 268
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.08 E-value=0.03 Score=58.95 Aligned_cols=87 Identities=15% Similarity=0.213 Sum_probs=59.2
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHH----hhhccCCEEEEccc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~----e~i~~ADvIiLavP 187 (313)
++|-|+|+|.+|+.+++.|++. |+++++ .+.+++..+.+++.|+..-.+...+.+ .=+++||+|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvv-ID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTV-LDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC------CCCEEE-EECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 6788999999999999999999 987654 455566677777777642222223332 13458999999999
Q ss_pred chhHHHHHHHHHhcCCCC
Q 021401 188 DAAQADNYEKIFSCMKPN 205 (313)
Q Consensus 188 ~~a~~~vi~ei~~~mk~g 205 (313)
+......+-.....+.|+
T Consensus 474 d~~~n~~i~~~ar~~~p~ 491 (621)
T PRK03562 474 DPQTSLQLVELVKEHFPH 491 (621)
T ss_pred CHHHHHHHHHHHHHhCCC
Confidence 877665443333333444
No 269
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.05 E-value=0.014 Score=54.02 Aligned_cols=86 Identities=15% Similarity=0.175 Sum_probs=52.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC----------CcccH-HHHHHCCceecC--CCcCCH
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----------GSRSF-AEARAAGFTEEN--GTLGDI 172 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~----------~~~s~-~~A~~~G~~~~~--~~~~~~ 172 (313)
.+|.| ++|+|.|+|++|..+++.|.+. |.+|+...+. +...+ +...+.|-...- ....+.
T Consensus 27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~ 99 (227)
T cd01076 27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITN 99 (227)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCC
Confidence 67899 9999999999999999999998 9987634343 22222 222333321100 000122
Q ss_pred Hhhh-ccCCEEEEcccchhHHH-HHHHH
Q 021401 173 YETI-SGSDLVLLLISDAAQAD-NYEKI 198 (313)
Q Consensus 173 ~e~i-~~ADvIiLavP~~a~~~-vi~ei 198 (313)
++++ .+||+++-|.+.+.+.. .++++
T Consensus 100 ~~i~~~~~Dvlip~a~~~~i~~~~~~~l 127 (227)
T cd01076 100 EELLELDCDILIPAALENQITADNADRI 127 (227)
T ss_pred ccceeecccEEEecCccCccCHHHHhhc
Confidence 2222 37899999987766543 44433
No 270
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.04 E-value=0.048 Score=52.46 Aligned_cols=89 Identities=15% Similarity=0.268 Sum_probs=65.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC--cccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcc
Q 021401 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (313)
Q Consensus 112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~--~~s~~~A~~~G~~~~~~~~~~~~e~i~~--ADvIiLav 186 (313)
.+|.|.| .|.+|..+.++|+++ |+.+++...+. .. .-.|+.. ..++.|+-.. .|+.++++
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~~~~-----~v~G~~~----y~sv~dlp~~~~~DlAvi~v 73 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGKGGT-----TVLGLPV----FNTVAEAVEATGANASVIYV 73 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCCCCC-----eEeCeec----cCCHHHHhhccCCCEEEEEc
Confidence 5788999 488999999999998 87644454443 11 1245553 5588887776 89999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCchh
Q 021401 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~l 216 (313)
|.....+.+++... ..-..+++.++||.+
T Consensus 74 p~~~v~~~l~e~~~-~gvk~avI~s~Gf~~ 102 (291)
T PRK05678 74 PPPFAADAILEAID-AGIDLIVCITEGIPV 102 (291)
T ss_pred CHHHHHHHHHHHHH-CCCCEEEEECCCCCH
Confidence 99999999987665 233457888999864
No 271
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.01 E-value=0.07 Score=45.80 Aligned_cols=66 Identities=27% Similarity=0.278 Sum_probs=47.5
Q ss_pred EEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEEEcccc
Q 021401 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISD 188 (313)
Q Consensus 114 IgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~i~~ADvIiLavP~ 188 (313)
|.|+|. |.+|..+++.|.+. |++|+...|+.++..+ ..++..-.....+ +.++++++|.|+.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 679995 99999999999999 9998888877543322 3343221122333 35678899999999985
No 272
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.00 E-value=0.032 Score=50.55 Aligned_cols=102 Identities=16% Similarity=0.195 Sum_probs=59.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecC--CcccHH--------------H--HH---H-CC
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK--GSRSFA--------------E--AR---A-AG 161 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~--~~~s~~--------------~--A~---~-~G 161 (313)
...|+. ++|+|||+|-||..+|..|... |+ ++++.++. ...++. . +. + ..
T Consensus 16 q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp 88 (200)
T TIGR02354 16 VQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP 88 (200)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Confidence 466778 9999999999999999999998 87 45544432 010000 0 00 0 00
Q ss_pred ---cee--cCCCcCCHHhhhccCCEEEEcccchhHHH-HHHHHHhcCCCCcEEEEecCc
Q 021401 162 ---FTE--ENGTLGDIYETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 162 ---~~~--~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi~ei~~~mk~gaiLid~~Gv 214 (313)
+.. +.-+..+.++.++++|+|+-++-...... ++++....++...++. .+|+
T Consensus 89 ~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~ 146 (200)
T TIGR02354 89 YTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA-ASGL 146 (200)
T ss_pred CCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE-Eecc
Confidence 100 00001133457889999999953334443 4457777776544454 4554
No 273
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.93 E-value=0.05 Score=49.14 Aligned_cols=88 Identities=15% Similarity=0.122 Sum_probs=53.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCC-------------------cccHHHHHHC----
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~~~---- 160 (313)
..-|.. ++|.|||+|-+|..++++|... |. ++.+.++.. .+....+.+.
T Consensus 16 q~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 16 QQRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred HHHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 356778 9999999999999999999998 87 444444320 0111111111
Q ss_pred -Ccee--cCCCc--CCHHhhhccCCEEEEcccchhHHHHHHHHH
Q 021401 161 -GFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (313)
Q Consensus 161 -G~~~--~~~~~--~~~~e~i~~ADvIiLavP~~a~~~vi~ei~ 199 (313)
.+.. .+... .+.++.++++|+||.++.......++++..
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~ 132 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDAC 132 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1100 00011 124567899999999986666555677654
No 274
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.92 E-value=0.028 Score=54.60 Aligned_cols=69 Identities=13% Similarity=0.053 Sum_probs=40.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhchhhhcCCc-------EEEEEecCCcc--cHHHHHH--CCc-e-ecC-CCcCCHHhhh
Q 021401 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR--SFAEARA--AGF-T-EEN-GTLGDIYETI 176 (313)
Q Consensus 112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~-------~Vivg~r~~~~--s~~~A~~--~G~-~-~~~-~~~~~~~e~i 176 (313)
+||+|||. |.+|.++|..|... |+ ++.+.+..... ....+.+ ... . ..+ ....+..+.+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 76 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAF 76 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHh
Confidence 79999999 99999999998765 44 44444432211 1111111 110 0 000 0013456789
Q ss_pred ccCCEEEEcc
Q 021401 177 SGSDLVLLLI 186 (313)
Q Consensus 177 ~~ADvIiLav 186 (313)
++||+||++.
T Consensus 77 ~daDivvita 86 (322)
T cd01338 77 KDADWALLVG 86 (322)
T ss_pred CCCCEEEEeC
Confidence 9999999975
No 275
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.91 E-value=0.018 Score=64.02 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=51.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhc---------CCcEEEEEecCCcccHHHHHHC-Cc--eecCCCcCCHHh--
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAK---------SDIVVKVGLRKGSRSFAEARAA-GF--TEENGTLGDIYE-- 174 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~---------~G~~Vivg~r~~~~s~~~A~~~-G~--~~~~~~~~~~~e-- 174 (313)
+.+++|+|||+|.||...++.|.+. .+.. .+..|.+++.......+.+... ++ +.-| ..+.++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lD--v~D~e~L~ 643 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLD--VSDSESLL 643 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEee--cCCHHHHH
Confidence 3348999999999999999999764 1000 0112555544322222233322 42 1101 234444
Q ss_pred -hhccCCEEEEcccchhHHHHHHH
Q 021401 175 -TISGSDLVLLLISDAAQADNYEK 197 (313)
Q Consensus 175 -~i~~ADvIiLavP~~a~~~vi~e 197 (313)
+++++|+|+.++|..-+..+...
T Consensus 644 ~~v~~~DaVIsalP~~~H~~VAka 667 (1042)
T PLN02819 644 KYVSQVDVVISLLPASCHAVVAKA 667 (1042)
T ss_pred HhhcCCCEEEECCCchhhHHHHHH
Confidence 44689999999999877776653
No 276
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=95.87 E-value=0.053 Score=54.87 Aligned_cols=87 Identities=17% Similarity=0.224 Sum_probs=66.0
Q ss_pred CEEEEEcc----cchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 112 kkIgIIG~----G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
++|+|||. |++|..+.++|++. |+ +| +...+... .-.|+.. ..+++|+-...|+++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v-~~Vnp~~~-----~i~G~~~----~~sl~~lp~~~Dlavi~ 71 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKI-YPVNPKAG-----EILGVKA----YPSVLEIPDPVDLAVIV 71 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcE-EEECCCCC-----ccCCccc----cCCHHHCCCCCCEEEEe
Confidence 89999999 88999999999998 77 44 34333221 1245542 45788887788999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecCch
Q 021401 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv~ 215 (313)
+|+....+++++... ..-..+|+.++||.
T Consensus 72 vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 72 VPAKYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred cCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 999999999998765 34456778888874
No 277
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.86 E-value=0.057 Score=48.56 Aligned_cols=69 Identities=22% Similarity=0.269 Sum_probs=49.9
Q ss_pred EEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHHCCceecCCCc---CCHHhhhccCCEEEEcccc
Q 021401 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTL---GDIYETISGSDLVLLLISD 188 (313)
Q Consensus 114 IgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~---~~~~e~i~~ADvIiLavP~ 188 (313)
|.|+|. |.+|+++++.|.+. +++|.+..|+... ..+..+..|+..-.... .++.++++++|.|+++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 689995 99999999999998 9998888887532 23344556754211222 2455689999999999993
No 278
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.85 E-value=0.04 Score=53.95 Aligned_cols=91 Identities=18% Similarity=0.086 Sum_probs=55.1
Q ss_pred EEEEcccchHHHHHHHHHhchhhhcCC-c-EEEEEecCCcccHHHHHH-C--CceecCCCcC---CHHhhhccCCEEEEc
Q 021401 114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA-A--GFTEENGTLG---DIYETISGSDLVLLL 185 (313)
Q Consensus 114 IgIIG~G~mG~AlA~~Lr~~~~~~~~G-~-~Vivg~r~~~~s~~~A~~-~--G~~~~~~~~~---~~~e~i~~ADvIiLa 185 (313)
|.|||.|.+|..+++.|.+. + . +|+++.|+..+..+.+.+ . .+....-... ++.++++++|+||.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 78999999999999999987 5 4 677777764433333321 1 1111000122 255789999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021401 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~mk~gaiLid~~G 213 (313)
+|+.....+++.... .|.-.+|.+.
T Consensus 75 ~gp~~~~~v~~~~i~---~g~~yvD~~~ 99 (386)
T PF03435_consen 75 AGPFFGEPVARACIE---AGVHYVDTSY 99 (386)
T ss_dssp SSGGGHHHHHHHHHH---HT-EEEESS-
T ss_pred CccchhHHHHHHHHH---hCCCeeccch
Confidence 999855556664333 3667788655
No 279
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=95.71 E-value=0.018 Score=57.74 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=43.4
Q ss_pred CEEEEEcccchHHHHHH--HHHhchhhhcCCcEEEEEecCCcccHHHHH--------HCCceecCCCcCCHHhhhccCCE
Q 021401 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------AAGFTEENGTLGDIYETISGSDL 181 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~--~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~--------~~G~~~~~~~~~~~~e~i~~ADv 181 (313)
+||+|||.|++|.+.+. .+.... +-.|.+|++.++. ++..+... ..+....-....+..+++++||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~--~~~g~eV~L~Did-~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTP--ELSGSTIALMDID-EERLETVEILAKKIVEELGAPLKIEATTDRREALDGADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCC--CCCCCEEEEECCC-HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCE
Confidence 47999999999998766 343110 1116676665543 32222111 11111000114577899999999
Q ss_pred EEEcccc
Q 021401 182 VLLLISD 188 (313)
Q Consensus 182 IiLavP~ 188 (313)
|+.+++.
T Consensus 78 Vi~ai~~ 84 (423)
T cd05297 78 VINTIQV 84 (423)
T ss_pred EEEeeEe
Confidence 9999995
No 280
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=95.71 E-value=0.055 Score=52.70 Aligned_cols=69 Identities=16% Similarity=0.045 Sum_probs=41.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHhchhhhcCCc-------EEEEEecCCcc--cHHHHHHC--Cc-ee-cC-CCcCCHHhhh
Q 021401 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR--SFAEARAA--GF-TE-EN-GTLGDIYETI 176 (313)
Q Consensus 112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~-------~Vivg~r~~~~--s~~~A~~~--G~-~~-~~-~~~~~~~e~i 176 (313)
.||+|||. |.+|.++|..|... ++ ++++.+..... ....+.+. .. .. .+ ....+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh
Confidence 68999998 99999999999876 54 45444443211 22222211 11 00 00 0013556889
Q ss_pred ccCCEEEEcc
Q 021401 177 SGSDLVLLLI 186 (313)
Q Consensus 177 ~~ADvIiLav 186 (313)
++||+||++-
T Consensus 78 ~daDvVVitA 87 (323)
T TIGR01759 78 KDVDAALLVG 87 (323)
T ss_pred CCCCEEEEeC
Confidence 9999999965
No 281
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.68 E-value=0.038 Score=53.19 Aligned_cols=80 Identities=11% Similarity=0.165 Sum_probs=56.6
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| |++.|||-+ .+|..++..|.+..+ ..+..|.+...+ +.++.+.+++||+||.
T Consensus 149 i~l~G-k~vvViGrS~iVGkPla~lL~~~~~--~~~AtVtvchs~-------------------T~~l~~~~~~ADIvV~ 206 (287)
T PRK14181 149 IPLHG-RHVAIVGRSNIVGKPLAALLMQKHP--DTNATVTLLHSQ-------------------SENLTEILKTADIIIA 206 (287)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHhCcC--CCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999965 789999999976500 002344432111 2367889999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-.. ++. .+++|+|++|+|++
T Consensus 207 AvG~p~---~i~--~~~ik~GavVIDvG 229 (287)
T PRK14181 207 AIGVPL---FIK--EEMIAEKAVIVDVG 229 (287)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 997543 343 24578999999987
No 282
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.68 E-value=0.048 Score=54.80 Aligned_cols=71 Identities=23% Similarity=0.169 Sum_probs=49.6
Q ss_pred ccccCCCCEEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEE
Q 021401 105 PDAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIi 183 (313)
++..++ ++|.|||+|..|.+ +|+.|++. |++|.+.+.+..+..+...+.|+... .....+.+.++|+||
T Consensus 2 ~~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv 71 (461)
T PRK00421 2 PELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVV 71 (461)
T ss_pred CCcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEE
Confidence 355677 99999999999999 79999999 99986665443332333345576531 122345677899998
Q ss_pred Ec
Q 021401 184 LL 185 (313)
Q Consensus 184 La 185 (313)
+.
T Consensus 72 ~s 73 (461)
T PRK00421 72 YS 73 (461)
T ss_pred EC
Confidence 84
No 283
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=95.67 E-value=0.07 Score=51.91 Aligned_cols=80 Identities=16% Similarity=0.183 Sum_probs=56.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021401 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (313)
Q Consensus 112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a 190 (313)
.+|+||| .|-.|.-+.+.|.+. +.+++.....+ +. +. ..+.+++++++|++++++|...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-----P~~el~~l~s~-~~---------~~-----~~~~~~~~~~~D~vFlalp~~~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-----DDIELLSIAPD-RR---------KD-----AAERAKLLNAADVAILCLPDDA 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-----CCeEEEEEecc-cc---------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence 5899999 799999999999875 23444322211 11 21 1245677789999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCc
Q 021401 191 QADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
..++..++. ..|+.|+|.++.
T Consensus 62 s~~~~~~~~---~~g~~VIDlSad 82 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTA 82 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChH
Confidence 777777654 368889998864
No 284
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=95.64 E-value=0.049 Score=44.22 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=56.4
Q ss_pred chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhhccCCEEEEcccchhHHH-HH
Q 021401 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NY 195 (313)
Q Consensus 121 ~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~-vi 195 (313)
+-+-.+++.|++. |.+|.+.+..- ... .... .++.. ..++++.++++|+||++++-....+ -+
T Consensus 17 Sp~~~l~~~L~~~------g~~V~~~DP~v-~~~-~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~ 84 (106)
T PF03720_consen 17 SPALELIEELKER------GAEVSVYDPYV-DEE-EIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDW 84 (106)
T ss_dssp -HHHHHHHHHHHT------T-EEEEE-TTS-HHH-HHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGH
T ss_pred CHHHHHHHHHHHC------CCEEEEECCcc-ChH-HHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCH
Confidence 4456778888888 99876555432 222 2222 34543 4578999999999999999988887 56
Q ss_pred HHHHhcCCCCcEEEEecCc
Q 021401 196 EKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 196 ~ei~~~mk~gaiLid~~Gv 214 (313)
+++...|+++.+|+|..++
T Consensus 85 ~~~~~~~~~~~~iiD~~~~ 103 (106)
T PF03720_consen 85 EEIAKLMRKPPVIIDGRNI 103 (106)
T ss_dssp HHHHHHSCSSEEEEESSST
T ss_pred HHHHHhcCCCCEEEECccc
Confidence 7888889889999998875
No 285
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.61 E-value=0.029 Score=53.67 Aligned_cols=99 Identities=14% Similarity=0.138 Sum_probs=60.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCc---ccHHHHHHCCceecC-CCcCC------HHh
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTEEN-GTLGD------IYE 174 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~---~s~~~A~~~G~~~~~-~~~~~------~~e 174 (313)
.+++| +++.|||.|-.+.+++..|... |. ++.+.+|..+ +..+.+.+.+..... ....+ +.+
T Consensus 120 ~~~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~ 192 (288)
T PRK12749 120 FDIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE 192 (288)
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhh
Confidence 35788 9999999999999999999887 86 6777877632 333333332210000 00112 233
Q ss_pred hhccCCEEEEcccchhHHH----HHHHHHhcCCCCcEEEEec
Q 021401 175 TISGSDLVLLLISDAAQAD----NYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 175 ~i~~ADvIiLavP~~a~~~----vi~ei~~~mk~gaiLid~~ 212 (313)
.+.++|+||-++|...... .... ...++++.+|.|+-
T Consensus 193 ~~~~aDivINaTp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~v 233 (288)
T PRK12749 193 ALASADILTNGTKVGMKPLENESLVND-ISLLHPGLLVTECV 233 (288)
T ss_pred hcccCCEEEECCCCCCCCCCCCCCCCc-HHHCCCCCEEEEec
Confidence 5678999999999865321 1111 12356777777653
No 286
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.60 E-value=0.053 Score=52.35 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=41.4
Q ss_pred EEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCC----cee-cCC-CcCCHHhhhccCCEEEE
Q 021401 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTE-ENG-TLGDIYETISGSDLVLL 184 (313)
Q Consensus 113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G----~~~-~~~-~~~~~~e~i~~ADvIiL 184 (313)
||+|||.|.+|.++|..|... +. ++++.+.........+.+.. +.. .+. ......+.+++||+|++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvi 74 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVI 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEE
Confidence 689999999999999998877 65 45445443322222222211 110 000 01123577899999999
Q ss_pred ccc
Q 021401 185 LIS 187 (313)
Q Consensus 185 avP 187 (313)
+.-
T Consensus 75 taG 77 (307)
T cd05290 75 TAG 77 (307)
T ss_pred CCC
Confidence 763
No 287
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.57 E-value=0.054 Score=53.28 Aligned_cols=92 Identities=16% Similarity=0.176 Sum_probs=59.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcC-CHHhhhccCCEEEEc
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLG-DIYETISGSDLVLLL 185 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~-~~~e~i~~ADvIiLa 185 (313)
-+| ++|+|+|.|-+|.--.|.+++. |.+|+.. +++++..+.|++.|...- +.... ..+++-+.+|+|+.+
T Consensus 165 ~pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~-~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 165 KPG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAI-TRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEE-eCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC
Confidence 347 9999999998888888888888 9887554 444566778888885321 00101 122233339999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEe
Q 021401 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~mk~gaiLid~ 211 (313)
++ .. .++...+.|+++-.++.+
T Consensus 237 v~-~~---~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 237 VG-PA---TLEPSLKALRRGGTLVLV 258 (339)
T ss_pred CC-hh---hHHHHHHHHhcCCEEEEE
Confidence 99 33 344444556665554433
No 288
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.55 E-value=0.029 Score=54.27 Aligned_cols=68 Identities=21% Similarity=0.199 Sum_probs=41.2
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHC--C--ceec-CCC-cCCHHhhhccCCEEE
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTEE-NGT-LGDIYETISGSDLVL 183 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G--~~~~-~~~-~~~~~e~i~~ADvIi 183 (313)
+||+|||.|.+|.++|..|... |. ++++.+.........+.+. . +... .-. ..+.+ .+++||+|+
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivv 76 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVI 76 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEE
Confidence 6999999999999999998877 65 4555544332222222211 1 1000 001 23555 489999999
Q ss_pred Ecc
Q 021401 184 LLI 186 (313)
Q Consensus 184 Lav 186 (313)
++.
T Consensus 77 ita 79 (312)
T cd05293 77 VTA 79 (312)
T ss_pred ECC
Confidence 954
No 289
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=95.54 E-value=0.037 Score=54.43 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=45.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|.| +++-|||.|.||.-.+++|++. |. ++++.+|.... ...+-. ....-+...++|+||.
T Consensus 170 ~~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 170 QKSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFF 232 (338)
T ss_pred CCccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEE
Confidence 56889 9999999999999999999999 86 57788876421 111000 0011144578999999
Q ss_pred cc
Q 021401 185 LI 186 (313)
Q Consensus 185 av 186 (313)
++
T Consensus 233 ~t 234 (338)
T PRK00676 233 GS 234 (338)
T ss_pred cC
Confidence 74
No 290
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=95.53 E-value=0.073 Score=51.79 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=55.7
Q ss_pred CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchh
Q 021401 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (313)
Q Consensus 112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a 190 (313)
.+|+||| .|..|..+.+.|.+. ..+++.....+... . .. +.++.++++|++|+|+|...
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h-----p~~~l~~~~s~~~~-------~-~~-------~~~~~~~~~DvvFlalp~~~ 62 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR-----SDIELLSIPEAKRK-------D-AA-------ARRELLNAADVAILCLPDDA 62 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC-----CCeEEEEEecCCCC-------c-cc-------CchhhhcCCCEEEECCCHHH
Confidence 6899999 899999999998876 13343322222111 0 11 33456678999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCc
Q 021401 191 QADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 191 ~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
..++..++.+ .|..|+|.++-
T Consensus 63 s~~~~~~~~~---~g~~VIDlSad 83 (313)
T PRK11863 63 AREAVALIDN---PATRVIDASTA 83 (313)
T ss_pred HHHHHHHHHh---CCCEEEECChh
Confidence 7787777653 58889998763
No 291
>PRK05442 malate dehydrogenase; Provisional
Probab=95.49 E-value=0.053 Score=52.84 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.2
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhc
Q 021401 111 INQIGVIGW-GSQGPAQAQNLRDS 133 (313)
Q Consensus 111 ikkIgIIG~-G~mG~AlA~~Lr~~ 133 (313)
.+||+|||. |.+|.++|..|...
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~ 27 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASG 27 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhh
Confidence 379999998 99999999988764
No 292
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.44 E-value=0.047 Score=54.35 Aligned_cols=94 Identities=13% Similarity=0.098 Sum_probs=55.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-CceecC-CCcCCHH-hhhccCCEEEEccc
Q 021401 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEEN-GTLGDIY-ETISGSDLVLLLIS 187 (313)
Q Consensus 112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~-~~~~~~~-e~i~~ADvIiLavP 187 (313)
++|+||| .|..|..+.+.|.+. ++.++....+..+.-....... .+...+ ....+.+ +.++++|+|++++|
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp 113 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLP 113 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCC
Confidence 7999999 599999999988765 2456554443321110001001 001000 0011222 22589999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
.....++...+ +.|..|+|.++.
T Consensus 114 ~~~s~~i~~~~----~~g~~VIDlSs~ 136 (381)
T PLN02968 114 HGTTQEIIKAL----PKDLKIVDLSAD 136 (381)
T ss_pred HHHHHHHHHHH----hCCCEEEEcCch
Confidence 87666666653 457889988864
No 293
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.42 E-value=0.047 Score=52.80 Aligned_cols=80 Identities=11% Similarity=0.120 Sum_probs=56.0
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+|+| +++.|||-+ .+|..+|..|.+.- +..+..|.+...+ +.++++.+++||+||.
T Consensus 157 i~l~G-k~vvViGrS~iVGkPla~lL~~~~--~~~~atVtv~hs~-------------------T~~l~~~~~~ADIvVs 214 (297)
T PRK14168 157 VETSG-AEVVVVGRSNIVGKPIANMMTQKG--PGANATVTIVHTR-------------------SKNLARHCQRADILIV 214 (297)
T ss_pred CCCCC-CEEEEECCCCcccHHHHHHHHhcc--cCCCCEEEEecCC-------------------CcCHHHHHhhCCEEEE
Confidence 47999 999999955 88999999997650 0002345443211 2367788999999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++.-.. ++. .+++|+|++|+|++
T Consensus 215 AvGkp~---~i~--~~~ik~gavVIDvG 237 (297)
T PRK14168 215 AAGVPN---LVK--PEWIKPGATVIDVG 237 (297)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEecC
Confidence 986433 333 24578999999986
No 294
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=95.38 E-value=0.17 Score=44.18 Aligned_cols=71 Identities=20% Similarity=0.193 Sum_probs=48.5
Q ss_pred CCCCEEEEEc--ccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--c----cH----HHHHHCCceecCCCcCCHHhhh
Q 021401 109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--R----SF----AEARAAGFTEENGTLGDIYETI 176 (313)
Q Consensus 109 ~GikkIgIIG--~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--~----s~----~~A~~~G~~~~~~~~~~~~e~i 176 (313)
+| ++|++|| .+++..|++..+..+ |+++.+....+- + .. +.+.+.|.... ...+++|++
T Consensus 1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~--~~~~~~e~l 71 (158)
T PF00185_consen 1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKIT--ITDDIEEAL 71 (158)
T ss_dssp TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEE--EESSHHHHH
T ss_pred CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeE--EEeCHHHhc
Confidence 57 9999999 389999999999999 998666654431 1 11 22233342110 145899999
Q ss_pred ccCCEEEEcccc
Q 021401 177 SGSDLVLLLISD 188 (313)
Q Consensus 177 ~~ADvIiLavP~ 188 (313)
+++|+|..-.-.
T Consensus 72 ~~aDvvy~~~~~ 83 (158)
T PF00185_consen 72 KGADVVYTDRWQ 83 (158)
T ss_dssp TT-SEEEEESSS
T ss_pred CCCCEEEEcCcc
Confidence 999998887665
No 295
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=95.30 E-value=0.17 Score=48.92 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=52.7
Q ss_pred cccCCCCEEEEEccc---chHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhhcc
Q 021401 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISG 178 (313)
Q Consensus 106 ~~l~GikkIgIIG~G---~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~~~~~~~~~e~i~~ 178 (313)
..++| .+|++||-| ++..|++..+... |+++.+...++- ...+.+++.|...+ ...++++++++
T Consensus 146 g~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~~a~~~ 216 (301)
T TIGR00670 146 GRLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKVR--ETESLEEVIDE 216 (301)
T ss_pred CCCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEEE--EECCHHHHhCC
Confidence 45888 999999985 9999999999998 999877765432 22345555664321 14589999999
Q ss_pred CCEEEEc
Q 021401 179 SDLVLLL 185 (313)
Q Consensus 179 ADvIiLa 185 (313)
||+|...
T Consensus 217 aDvvyt~ 223 (301)
T TIGR00670 217 ADVLYVT 223 (301)
T ss_pred CCEEEEC
Confidence 9999874
No 296
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.29 E-value=0.048 Score=54.91 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=49.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc----HHHHHHCCceecCCCcCCHHhhhccCCE
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAAGFTEENGTLGDIYETISGSDL 181 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s----~~~A~~~G~~~~~~~~~~~~e~i~~ADv 181 (313)
.-+.| ++|+|+|+|..|.++|+.|++. |++|.+.++..... .+...+.|+....+ ....+.+.++|+
T Consensus 10 ~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~--~~~~~~~~~~dl 80 (458)
T PRK01710 10 KFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVLG--ENYLDKLDGFDV 80 (458)
T ss_pred hhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEeC--CCChHHhccCCE
Confidence 55678 9999999999999999999999 99876665443211 12344567643111 122455688999
Q ss_pred EEEc
Q 021401 182 VLLL 185 (313)
Q Consensus 182 IiLa 185 (313)
||..
T Consensus 81 VV~S 84 (458)
T PRK01710 81 IFKT 84 (458)
T ss_pred EEEC
Confidence 9886
No 297
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.28 E-value=0.09 Score=50.32 Aligned_cols=68 Identities=21% Similarity=0.268 Sum_probs=40.9
Q ss_pred EEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCC-cee--cCC--CcCCHHhhhccCCEEEEcc
Q 021401 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG-FTE--ENG--TLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 114 IgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G-~~~--~~~--~~~~~~e~i~~ADvIiLav 186 (313)
|+|||.|.+|.++|..|... |+ ++.+.+...+.....+.+.. ... ... ...+..+.+++||+||++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcC
Confidence 68999999999999999887 74 55555543332222222110 000 000 0112256899999999987
Q ss_pred c
Q 021401 187 S 187 (313)
Q Consensus 187 P 187 (313)
.
T Consensus 75 g 75 (300)
T cd00300 75 G 75 (300)
T ss_pred C
Confidence 5
No 298
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.27 E-value=0.12 Score=50.88 Aligned_cols=96 Identities=13% Similarity=0.126 Sum_probs=57.0
Q ss_pred CCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH----HCCceecCCCcCCHHhh-hccCCEEEE
Q 021401 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYET-ISGSDLVLL 184 (313)
Q Consensus 111 ikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~~~e~-i~~ADvIiL 184 (313)
++||+||| .|--|.-+.+.|... +.+++.+...+......... ..|..+-.-...+.+++ ..+||+|||
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-----p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-----PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-----CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 47999999 788899888888764 24464444322111111111 11221100011233333 456999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
|+|...-.+++.++.+ +|..|+|.++-
T Consensus 77 alPhg~s~~~v~~l~~---~g~~VIDLSad 103 (349)
T COG0002 77 ALPHGVSAELVPELLE---AGCKVIDLSAD 103 (349)
T ss_pred ecCchhHHHHHHHHHh---CCCeEEECCcc
Confidence 9999998888887764 35559998763
No 299
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=95.25 E-value=0.012 Score=58.46 Aligned_cols=99 Identities=18% Similarity=0.146 Sum_probs=72.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
..-..| .++|+||+|..|.++++..+.+ |..|+.++..-.+-.+.+.-.+++ .++.|++-++|-+.+
T Consensus 173 ~~~~~G-~~~g~~g~gr~g~av~~~A~af------g~~~ifydp~~~~g~~~~lg~~rV------ytlqd~~~~sd~~S~ 239 (435)
T KOG0067|consen 173 LARIRG-PTLGLIGFGRTGQAVALRAKAF------GFVVIFYDPYLIDGIDKSLGLQRV------YTLQDLLYQSDCVSL 239 (435)
T ss_pred cccccc-cceeeeccccccceehhhhhcc------cceeeeecchhhhhhhhhccccee------cccchhhhhccceee
Confidence 345667 8999999999999999999999 987654433323333444333343 368888999999999
Q ss_pred cccchhHHH-HHHH-HHhcCCCCcEEEE-ecCchh
Q 021401 185 LISDAAQAD-NYEK-IFSCMKPNSILGL-SHGFLL 216 (313)
Q Consensus 185 avP~~a~~~-vi~e-i~~~mk~gaiLid-~~Gv~l 216 (313)
+|......+ +++. -...|+.|+.+.. +.|..+
T Consensus 240 hc~~~~~~h~lin~~tikqm~qGaflvnta~gglv 274 (435)
T KOG0067|consen 240 HCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLV 274 (435)
T ss_pred ecccCcccccccccccceeecccceEeeecccccC
Confidence 999999876 6663 4578999998875 456543
No 300
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.24 E-value=0.1 Score=51.09 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=56.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCC---------------------cccH---HHHHH
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSF---AEARA 159 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~---------------------~~s~---~~A~~ 159 (313)
...|+. ++|.|||+|-+|..+|+.|... |+ ++.+.++.. ++.. +...+
T Consensus 19 Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 19 QRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred HHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence 467888 9999999999999999999998 87 454444321 0110 00011
Q ss_pred --CCcee----cCCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHhc
Q 021401 160 --AGFTE----ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSC 201 (313)
Q Consensus 160 --~G~~~----~~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~ 201 (313)
.++.. .+.+..+++++++++|+||.++-......+++++...
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~ 139 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQK 139 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH
Confidence 12211 0111124577899999999999665555577766543
No 301
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.24 E-value=0.047 Score=51.96 Aligned_cols=98 Identities=15% Similarity=0.116 Sum_probs=58.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEEecCC---cccHHHHHHC---C--ceecCCCcC---CHH
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G--FTEENGTLG---DIY 173 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~r~~---~~s~~~A~~~---G--~~~~~~~~~---~~~ 173 (313)
..++| +++.|+|.|-+|.+++..|.+. |.+ |.+.+|.. ++..+.+.+. + ......... +.+
T Consensus 122 ~~~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~ 194 (289)
T PRK12548 122 VDVKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLK 194 (289)
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHH
Confidence 35778 9999999999999999999988 885 77777764 2222222221 1 000000011 223
Q ss_pred hhhccCCEEEEcccchhHHH----HHHHHHhcCCCCcEEEEe
Q 021401 174 ETISGSDLVLLLISDAAQAD----NYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 174 e~i~~ADvIiLavP~~a~~~----vi~ei~~~mk~gaiLid~ 211 (313)
+.++++|+||-+||...... .+. -...++++.+|.|+
T Consensus 195 ~~~~~~DilINaTp~Gm~~~~~~~~~~-~~~~l~~~~~v~D~ 235 (289)
T PRK12548 195 AEIASSDILVNATLVGMKPNDGETNIK-DTSVFRKDLVVADT 235 (289)
T ss_pred hhhccCCEEEEeCCCCCCCCCCCCCCC-cHHhcCCCCEEEEe
Confidence 45678899999999764321 110 01335566666665
No 302
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.21 E-value=0.078 Score=51.54 Aligned_cols=75 Identities=11% Similarity=0.043 Sum_probs=41.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhc-hhhhcCCcEEEEEecCCcccHHHHHHCCceec------C-CCcCCHHhhhccCCEE
Q 021401 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE------N-GTLGDIYETISGSDLV 182 (313)
Q Consensus 112 kkIgIIG~-G~mG~AlA~~Lr~~-~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~------~-~~~~~~~e~i~~ADvI 182 (313)
.||+|||. |.+|.+++..|... +..-..+.++++.++........+....+.+- + ....+..+.+++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 58999998 99999999999875 00000023565555432211111111111100 0 0023556889999999
Q ss_pred EEcc
Q 021401 183 LLLI 186 (313)
Q Consensus 183 iLav 186 (313)
|++.
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9865
No 303
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=95.20 E-value=0.061 Score=52.35 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=39.3
Q ss_pred EEEEEcc-cchHHHHHHHHHhchhhhcCCc-------EEEEEecCCcccHHHHHHCCceecC-------CCcCCHHhhhc
Q 021401 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEEN-------GTLGDIYETIS 177 (313)
Q Consensus 113 kIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~-------~Vivg~r~~~~s~~~A~~~G~~~~~-------~~~~~~~e~i~ 177 (313)
+|+|||. |.+|.++|..|... ++ ++++.+.........+......+-. ....+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 5899999 99999999999875 33 3444443222111111111111100 00124468899
Q ss_pred cCCEEEEcc
Q 021401 178 GSDLVLLLI 186 (313)
Q Consensus 178 ~ADvIiLav 186 (313)
+||+||++.
T Consensus 75 ~aDiVVitA 83 (324)
T TIGR01758 75 DVDVAILVG 83 (324)
T ss_pred CCCEEEEcC
Confidence 999999965
No 304
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.19 E-value=0.034 Score=54.36 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=46.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCcee
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (313)
+-=+| .+++|+|+|.+|.+++++.|.. |..-|++.|.+++-.+.|++.|+++
T Consensus 189 kv~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe 240 (375)
T KOG0022|consen 189 KVEPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE 240 (375)
T ss_pred ccCCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce
Confidence 34468 9999999999999999999999 9877899999999899999999985
No 305
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.15 E-value=0.046 Score=53.25 Aligned_cols=74 Identities=18% Similarity=0.120 Sum_probs=44.8
Q ss_pred ccccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHH----C-CceecCCCc-CCHHhh
Q 021401 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----A-GFTEENGTL-GDIYET 175 (313)
Q Consensus 105 ~~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~----~-G~~~~~~~~-~~~~e~ 175 (313)
+..++. +||+|||. |.+|.++|..|... +. ++++.+.. .....+.+ . .....+.+. .+..+.
T Consensus 3 ~~~~~~-~KI~IiGaaG~VGs~~a~~l~~~------~~~~elvL~Di~--~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 3 PSALKM-FKVAVLGAAGGIGQPLSLLLKQN------PHVSELSLYDIV--GAPGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CcCCCC-CEEEEECCCCHHHHHHHHHHhcC------CCCCEEEEEecC--CCcccccchhhcCcCceEEEecCCCchHHH
Confidence 356777 99999999 99999999999865 43 55555442 11111111 0 111101111 122678
Q ss_pred hccCCEEEEccc
Q 021401 176 ISGSDLVLLLIS 187 (313)
Q Consensus 176 i~~ADvIiLavP 187 (313)
+++||+|+++.-
T Consensus 74 l~gaDvVVitaG 85 (321)
T PTZ00325 74 LRGADLVLICAG 85 (321)
T ss_pred hCCCCEEEECCC
Confidence 999999998763
No 306
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.12 E-value=0.062 Score=54.49 Aligned_cols=75 Identities=15% Similarity=0.103 Sum_probs=50.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
..+.+ ++|.|+|+|-.|.++|+.|++. |.+|.+.+++.....+...+.|+.... .....+.+.++|+||..
T Consensus 11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~--~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADIS--TAEASDQLDSFSLVVTS 81 (473)
T ss_pred ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEEe--CCCchhHhcCCCEEEeC
Confidence 45677 9999999999999999999999 997766554322222223445765311 11234556789999885
Q ss_pred --ccch
Q 021401 186 --ISDA 189 (313)
Q Consensus 186 --vP~~ 189 (313)
+|++
T Consensus 82 pgi~~~ 87 (473)
T PRK00141 82 PGWRPD 87 (473)
T ss_pred CCCCCC
Confidence 4543
No 307
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=95.11 E-value=0.083 Score=51.36 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=55.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHhchhhhcCCc---EEEEEecCCcccHHHHHHCCceecCCCcCCH-HhhhccCCEEEEcc
Q 021401 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLI 186 (313)
Q Consensus 112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~---~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~e~i~~ADvIiLav 186 (313)
++|+||| .|..|..+.+.|.+. ++ ++....+..+...... -.|... ...+. .+.++++|+||+++
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~-~~g~~i---~v~d~~~~~~~~vDvVf~A~ 71 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS-FKGKEL---KVEDLTTFDFSGVDIALFSA 71 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee-eCCcee---EEeeCCHHHHcCCCEEEECC
Confidence 7999999 799999999999886 55 3333333221111110 011110 01111 13457999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
|-....++.+++. +.|+.|+|.++-
T Consensus 72 g~g~s~~~~~~~~---~~G~~VIDlS~~ 96 (334)
T PRK14874 72 GGSVSKKYAPKAA---AAGAVVIDNSSA 96 (334)
T ss_pred ChHHHHHHHHHHH---hCCCEEEECCch
Confidence 9887777777654 357888887763
No 308
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.03 E-value=0.12 Score=52.77 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=50.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
..+.| +++.|+|+|..|.+.++.|++. |.+|++.+++ ....+.+++.|+.... .....+.++++|+||..
T Consensus 8 ~~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~-~~~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 8 PLLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDD-PDALRPHAERGVATVS--TSDAVQQIADYALVVTS 77 (488)
T ss_pred cccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHhCCCEEEc--CcchHhHhhcCCEEEEC
Confidence 45578 9999999999999999999999 9988765533 3333445556764311 11234567889999885
Q ss_pred c
Q 021401 186 I 186 (313)
Q Consensus 186 v 186 (313)
-
T Consensus 78 p 78 (488)
T PRK03369 78 P 78 (488)
T ss_pred C
Confidence 4
No 309
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.01 E-value=0.41 Score=47.08 Aligned_cols=94 Identities=12% Similarity=0.028 Sum_probs=56.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHhchhhhcCCc--E-EEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021401 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--V-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (313)
Q Consensus 112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~--~-Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP 187 (313)
++|||+| .|..|+.+.+.|.+. .+ + +.+.....+.-.++..-.|....-..........+++|+++.+.+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~------~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag 75 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER------HFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAG 75 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc------CCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCc
Confidence 7899998 799999999999885 33 2 222222211111111111221000000012245668999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 188 ~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
-....++.++..+ .|.+|+|.++.
T Consensus 76 ~~~s~~~~p~~~~---~G~~VIdnsSa 99 (334)
T COG0136 76 GSVSKEVEPKAAE---AGCVVIDNSSA 99 (334)
T ss_pred hHHHHHHHHHHHH---cCCEEEeCCcc
Confidence 8877777776654 58999988765
No 310
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.00 E-value=0.12 Score=51.49 Aligned_cols=72 Identities=24% Similarity=0.212 Sum_probs=49.0
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH----HHHHHCCceecCCCcCCHHhhhccCCEE
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLV 182 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~----~~A~~~G~~~~~~~~~~~~e~i~~ADvI 182 (313)
++++ +++.|||.|.+|.++|+.|.+. |++|.+.++...... +...+.|..... ....++...++|+|
T Consensus 2 ~~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~v 72 (450)
T PRK14106 2 ELKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLV 72 (450)
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEE
Confidence 4678 9999999999999999999999 999877766532222 122233543210 11233556789999
Q ss_pred EEccc
Q 021401 183 LLLIS 187 (313)
Q Consensus 183 iLavP 187 (313)
|.++-
T Consensus 73 v~~~g 77 (450)
T PRK14106 73 VVSPG 77 (450)
T ss_pred EECCC
Confidence 99764
No 311
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.00 E-value=0.093 Score=51.55 Aligned_cols=87 Identities=15% Similarity=0.208 Sum_probs=55.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHhchhhhcCCc---EEE-EEec-CCcccHHHHHHCC--ceecCCCcCCHHhhhccCCEEE
Q 021401 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVK-VGLR-KGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVL 183 (313)
Q Consensus 112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~---~Vi-vg~r-~~~~s~~~A~~~G--~~~~~~~~~~~~e~i~~ADvIi 183 (313)
++|+||| .|..|..+.+.|.+. ++ ++. +..+ ...+.... .| ...+ ..+. +.++++|+||
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~~v~---~~~~-~~~~~~D~vf 74 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDYTVE---ELTE-DSFDGVDIAL 74 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCceeEEE---eCCH-HHHcCCCEEE
Confidence 7899999 789999999999875 54 222 2222 21111111 12 1110 0122 4568999999
Q ss_pred EcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 184 LavP~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
+++|.....++..+... .|+.|+|.++.
T Consensus 75 ~a~p~~~s~~~~~~~~~---~g~~VIDlS~~ 102 (344)
T PLN02383 75 FSAGGSISKKFGPIAVD---KGAVVVDNSSA 102 (344)
T ss_pred ECCCcHHHHHHHHHHHh---CCCEEEECCch
Confidence 99999877777776533 68899998864
No 312
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.96 E-value=0.096 Score=52.74 Aligned_cols=71 Identities=27% Similarity=0.197 Sum_probs=49.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc----HHHHHHCCceecCCCcCCHHhhhccCCE
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAAGFTEENGTLGDIYETISGSDL 181 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s----~~~A~~~G~~~~~~~~~~~~e~i~~ADv 181 (313)
.++.| +++.|||.|.+|.+.|..|++. |++|.+.++.+... .+..++.|+... .....+...++|+
T Consensus 12 ~~~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~ 81 (480)
T PRK01438 12 SDWQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDL 81 (480)
T ss_pred cCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCE
Confidence 35678 9999999999999999999999 99987766443211 233445676531 1111124557999
Q ss_pred EEEcc
Q 021401 182 VLLLI 186 (313)
Q Consensus 182 IiLav 186 (313)
||++.
T Consensus 82 Vv~s~ 86 (480)
T PRK01438 82 VVTSP 86 (480)
T ss_pred EEECC
Confidence 99976
No 313
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.93 E-value=0.29 Score=46.87 Aligned_cols=95 Identities=21% Similarity=0.148 Sum_probs=62.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC--CcccHHHHHHCCceecCCCcCCHHh--hhccCCEEE
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVL 183 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~--~~~s~~~A~~~G~~~~~~~~~~~~e--~i~~ADvIi 183 (313)
.+| .++.|+|.|.+|...++.++.. |.+|++..++ +++..+.+++.|...-+....+..+ .....|+||
T Consensus 171 ~~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vi 243 (355)
T cd08230 171 WNP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLII 243 (355)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEE
Confidence 368 9999999999999999999998 9887666553 3455667788886421100011111 224579999
Q ss_pred EcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 184 LavP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
-++.... .+++....++++-.++.++
T Consensus 244 d~~g~~~---~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 244 EATGVPP---LAFEALPALAPNGVVILFG 269 (355)
T ss_pred ECcCCHH---HHHHHHHHccCCcEEEEEe
Confidence 9887432 4556666777777665443
No 314
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.92 E-value=0.096 Score=50.94 Aligned_cols=68 Identities=12% Similarity=0.076 Sum_probs=39.3
Q ss_pred EEEEEcc-cchHHHHHHHHHhchhhhcCCc-------EEEEEecCCcccHHHHHHCCceec------C-CCcCCHHhhhc
Q 021401 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEE------N-GTLGDIYETIS 177 (313)
Q Consensus 113 kIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~-------~Vivg~r~~~~s~~~A~~~G~~~~------~-~~~~~~~e~i~ 177 (313)
||+|||. |.+|.+++..|... ++ ++.+.+.........+......+. + .......+.++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~------~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~ 75 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG------ELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFK 75 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC------CccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhC
Confidence 7999999 99999999998865 43 344444432000011111111100 0 00135678899
Q ss_pred cCCEEEEcc
Q 021401 178 GSDLVLLLI 186 (313)
Q Consensus 178 ~ADvIiLav 186 (313)
+||+||++-
T Consensus 76 ~aDiVVitA 84 (323)
T cd00704 76 DVDVAILVG 84 (323)
T ss_pred CCCEEEEeC
Confidence 999999865
No 315
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=94.92 E-value=0.049 Score=49.70 Aligned_cols=79 Identities=9% Similarity=0.231 Sum_probs=52.9
Q ss_pred CEEEEEcccchHHHHHHH--HHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEccc
Q 021401 112 NQIGVIGWGSQGPAQAQN--LRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~--Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP 187 (313)
-++.|||.|++|.|++.. .++. +++++-..|.+++..-. .-.++... ...++++.++ +.|+.||++|
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~VG~-~~~~v~V~--~~d~le~~v~~~dv~iaiLtVP 155 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKVGT-KIGDVPVY--DLDDLEKFVKKNDVEIAILTVP 155 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHhCc-ccCCeeee--chHHHHHHHHhcCccEEEEEcc
Confidence 578999999999999864 3345 88888777776542211 11233321 2456777777 7899999999
Q ss_pred chhHHHHHHHHH
Q 021401 188 DAAQADNYEKIF 199 (313)
Q Consensus 188 ~~a~~~vi~ei~ 199 (313)
-....++.+.+.
T Consensus 156 a~~AQ~vad~Lv 167 (211)
T COG2344 156 AEHAQEVADRLV 167 (211)
T ss_pred HHHHHHHHHHHH
Confidence 766555666543
No 316
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=94.91 E-value=0.098 Score=51.26 Aligned_cols=88 Identities=22% Similarity=0.162 Sum_probs=53.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhchhhhcCCcE--EEEEecCCc---ccHHHH-HHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV--VKVGLRKGS---RSFAEA-RAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~--Vivg~r~~~---~s~~~A-~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
++|+||| .|..|..+.+.|.+. ++. .+......+ +..... ...-+. ..+.++ ++++|++++
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~-----~~~~~~-~~~vD~vFl 72 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEER------DFPVGTLHLLASSESAGHSVPFAGKNLRVR-----EVDSFD-FSQVQLAFF 72 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhC------CCCceEEEEEECcccCCCeeccCCcceEEe-----eCChHH-hcCCCEEEE
Confidence 6899999 599999999999865 431 112222211 111100 001111 112233 589999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
++|.....++.++..+ .|..++|.+|.
T Consensus 73 a~p~~~s~~~v~~~~~---~G~~VIDlS~~ 99 (336)
T PRK05671 73 AAGAAVSRSFAEKARA---AGCSVIDLSGA 99 (336)
T ss_pred cCCHHHHHHHHHHHHH---CCCeEEECchh
Confidence 9997655566665544 48889988764
No 317
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.91 E-value=0.084 Score=51.06 Aligned_cols=79 Identities=15% Similarity=0.099 Sum_probs=55.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhc-hhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEE
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~-~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIi 183 (313)
.+|+| |++.|||-+ .+|..+|..|.+. +. .+..|.+.-.+ +.++++.+++||+||
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~~~~---~~aTVtvchs~-------------------T~~l~~~~~~ADIvI 209 (297)
T PRK14167 153 VDTEG-ADVVVVGRSDIVGKPMANLLIQKADG---GNATVTVCHSR-------------------TDDLAAKTRRADIVV 209 (297)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHhcCccC---CCCEEEEeCCC-------------------CCCHHHHHhhCCEEE
Confidence 37999 999999965 7899999998653 00 02345443111 236778899999999
Q ss_pred EcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 184 LavP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
.++--.. ++. .+++|+|++|+|++
T Consensus 210 sAvGkp~---~i~--~~~ik~gaiVIDvG 233 (297)
T PRK14167 210 AAAGVPE---LID--GSMLSEGATVIDVG 233 (297)
T ss_pred EccCCcC---ccC--HHHcCCCCEEEEcc
Confidence 9886433 333 25679999999986
No 318
>PRK05086 malate dehydrogenase; Provisional
Probab=94.90 E-value=0.14 Score=49.37 Aligned_cols=72 Identities=19% Similarity=0.148 Sum_probs=40.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH--C-C--ceecCCCcCCHHhhhccCCEEEEc
Q 021401 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--A-G--FTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~--~-G--~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
|||+|||. |.+|.+++..|...+. .+.++.+..+. +.....+.+ . + .........++.+.++++|+||++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~---~~~el~L~d~~-~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLP---AGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCC---CccEEEEEecC-CCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEc
Confidence 68999999 9999999988854210 03344444443 322111111 1 1 110000013556788999999998
Q ss_pred cc
Q 021401 186 IS 187 (313)
Q Consensus 186 vP 187 (313)
.-
T Consensus 77 aG 78 (312)
T PRK05086 77 AG 78 (312)
T ss_pred CC
Confidence 74
No 319
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.87 E-value=0.14 Score=49.26 Aligned_cols=69 Identities=26% Similarity=0.349 Sum_probs=41.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHhchhhhcCCc--EEEEEecCC--cccHHHHH-------HCCceecCCCcCCHHhhhccC
Q 021401 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAGFTEENGTLGDIYETISGS 179 (313)
Q Consensus 112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~--~~s~~~A~-------~~G~~~~~~~~~~~~e~i~~A 179 (313)
|||+|||. |.+|..++..|... |+ ++++.++.. +.....+. ..+...+-....+ .+.+++|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~a 73 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGS 73 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCC
Confidence 68999997 99999999999887 76 355555532 11111110 1111000000124 4569999
Q ss_pred CEEEEccc
Q 021401 180 DLVLLLIS 187 (313)
Q Consensus 180 DvIiLavP 187 (313)
|+||++..
T Consensus 74 DiViitag 81 (309)
T cd05294 74 DIVIITAG 81 (309)
T ss_pred CEEEEecC
Confidence 99999885
No 320
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.80 E-value=0.08 Score=53.08 Aligned_cols=67 Identities=30% Similarity=0.291 Sum_probs=46.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+++| ++|.|||+|-.|.+.|+.|++. |++|.+.++. ........+.|+... ..+ .+-+.++|+||.
T Consensus 5 ~~~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~-~~~~~~l~~~g~~~~---~~~-~~~~~~~d~vv~ 71 (460)
T PRK01390 5 TGFAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDN-PASRAKAAAAGITTA---DLR-TADWSGFAALVL 71 (460)
T ss_pred cccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCC-hhhHHHHHhcCcccc---CCC-hhHHcCCCEEEE
Confidence 45788 9999999999999999999999 9987655533 222223345566521 112 234578999886
No 321
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=94.77 E-value=0.13 Score=49.36 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=59.8
Q ss_pred CCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccch
Q 021401 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (313)
Q Consensus 110 GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~ 189 (313)
| ++|+|||--.=-..+++.|.+. |++|.+..-+++. + ...|... ..+.+++++++|+|++.+|+.
T Consensus 2 ~-~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~---~-~~~g~~~----~~~~~~~~~~ad~ii~~~p~~ 66 (296)
T PRK08306 2 G-KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD---H-GFTGATK----SSSLEEALSDVDVIILPVPGT 66 (296)
T ss_pred C-cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc---c-ccCCcee----eccHHHHhccCCEEEECCccc
Confidence 5 8999999888778889999999 9988764333221 1 2246553 346688999999999999973
Q ss_pred hH--------H--H-HH-HHHHhcCCCCcEEE
Q 021401 190 AQ--------A--D-NY-EKIFSCMKPNSILG 209 (313)
Q Consensus 190 a~--------~--~-vi-~ei~~~mk~gaiLi 209 (313)
.. . + -+ ++.++.|++++++.
T Consensus 67 ~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 67 NDEGNVDTVFSNEKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred cCCceeeccccccCCcchHHHHHhcCCCCEEE
Confidence 21 0 1 12 36788899998655
No 322
>PLN02602 lactate dehydrogenase
Probab=94.76 E-value=0.1 Score=51.47 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=40.4
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHC--C--ceec-CCCc-CCHHhhhccCCEEE
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTEE-NGTL-GDIYETISGSDLVL 183 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G--~~~~-~~~~-~~~~e~i~~ADvIi 183 (313)
+||+|||.|.+|.++|..|... +. ++.+.+.........+.+. . +... .-.. .+. +.+++||+||
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVV 110 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCI 110 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEE
Confidence 5999999999999999998877 65 4444443322222222211 0 1100 0001 233 4589999999
Q ss_pred Ecc
Q 021401 184 LLI 186 (313)
Q Consensus 184 Lav 186 (313)
++.
T Consensus 111 itA 113 (350)
T PLN02602 111 VTA 113 (350)
T ss_pred ECC
Confidence 984
No 323
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.76 E-value=0.3 Score=47.65 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=62.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-CCceecCCCcC-CHH----hhh--ccC
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG-DIY----ETI--SGS 179 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~-~~~----e~i--~~A 179 (313)
..| .++.|+|.|.||.-.++.++.. |...++..+.++..++.|++ .|...-..... +.. +.- ..+
T Consensus 167 ~~~-~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~ 239 (350)
T COG1063 167 RPG-GTVVVVGAGPIGLLAIALAKLL------GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGA 239 (350)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCC
Confidence 444 5899999999999999999988 87656666777777888888 44321000001 111 222 359
Q ss_pred CEEEEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021401 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 180 DvIiLavP~~a~~~vi~ei~~~mk~gaiLid~ 211 (313)
|++|-++- ....+++....++++-.+..+
T Consensus 240 D~vie~~G---~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 240 DVVIEAVG---SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred CEEEECCC---CHHHHHHHHHHhcCCCEEEEE
Confidence 99999999 333566667777777665543
No 324
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.74 E-value=0.19 Score=49.57 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=65.5
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEE-EecCCcccHHHHHHCCceecCCCcCCHHhhhccC--CEEEEcccc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD 188 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~A--DvIiLavP~ 188 (313)
-++||+|+|.|+.-.++.|.-. .+ +++.|+. +.++-+...+.|++.++. .-...++.+|++++. |+|.+.+|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~--s~~~Ivava~~s~~~A~~fAq~~~~~-~~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PE--SNHQIVAVADPSLERAKEFAQRHNIP-NPKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-cc--cCcEEEEEecccHHHHHHHHHhcCCC-CCccccCHHHHhcCCCcCEEEeCCCC
Confidence 4789999999999999998764 11 2555443 334344556788888883 123467999999876 999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEE
Q 021401 189 AAQADNYEKIFSCMKPNSILG 209 (313)
Q Consensus 189 ~a~~~vi~ei~~~mk~gaiLi 209 (313)
..+.++.-..+.+=|+ +|+
T Consensus 83 ~qH~evv~l~l~~~K~--VL~ 101 (351)
T KOG2741|consen 83 PQHYEVVMLALNKGKH--VLC 101 (351)
T ss_pred ccHHHHHHHHHHcCCc--EEe
Confidence 9998877655544333 555
No 325
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.70 E-value=0.18 Score=47.69 Aligned_cols=89 Identities=9% Similarity=-0.003 Sum_probs=59.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP 187 (313)
.+| +++.|+|.|.+|...++.++.. |.++++..+.+++..+.+.+.++++ ..++.-...|+|+=++.
T Consensus 143 ~~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i~------~~~~~~~g~Dvvid~~G 209 (308)
T TIGR01202 143 VKV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVLD------PEKDPRRDYRAIYDASG 209 (308)
T ss_pred cCC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhccccC------hhhccCCCCCEEEECCC
Confidence 367 8999999999999999999988 9876666555544455555444432 11112246899998887
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEec
Q 021401 188 DAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 188 ~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
... .+++..+.++++-.++.++
T Consensus 210 ~~~---~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 210 DPS---LIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred CHH---HHHHHHHhhhcCcEEEEEe
Confidence 543 3455566677777666443
No 326
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.68 E-value=0.11 Score=50.69 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=52.0
Q ss_pred CEEEEEcccchHHHHHHHHHhc---hhh-hcCCcEEEEEecCCc-------ccHH----HHHHCCceec---CCCcCCHH
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDS---LAE-AKSDIVVKVGLRKGS-------RSFA----EARAAGFTEE---NGTLGDIY 173 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~---~~~-~~~G~~Vivg~r~~~-------~s~~----~A~~~G~~~~---~~~~~~~~ 173 (313)
.+|+|||+|.||..+++.|++. +.+ .+.+++++...+++. -..+ .+.+.|.... .....+.+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5899999999999999998754 111 112445433333210 0111 2222232110 00123777
Q ss_pred hhh--ccCCEEEEcccchhHH-HH-HHHHHhcCCCCcEEE
Q 021401 174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILG 209 (313)
Q Consensus 174 e~i--~~ADvIiLavP~~a~~-~v-i~ei~~~mk~gaiLi 209 (313)
+++ .+.|+|+.++|+..+. +. .+-+...|+.|.-|+
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVV 122 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVV 122 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEE
Confidence 877 4689999999986542 21 222233445565554
No 327
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.62 E-value=0.24 Score=50.70 Aligned_cols=102 Identities=16% Similarity=0.226 Sum_probs=67.8
Q ss_pred cccCCCCEEEEEcc----------cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-----cee------
Q 021401 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTE------ 164 (313)
Q Consensus 106 ~~l~GikkIgIIG~----------G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-----~~~------ 164 (313)
..+.| ++|+|+|+ .+-...+++.|.+. |.+|.+.+.. -...+.....+ +..
T Consensus 320 ~~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~-v~~~~~~~~~~~~~~~~~~~~~~~~ 391 (473)
T PLN02353 320 NTVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQ-VTEEQIQRDLSMNKFDWDHPRHLQP 391 (473)
T ss_pred cccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCC-CChHHHHHHhhcccccccccccccc
Confidence 35889 99999998 45667788888887 9987665543 11111111111 100
Q ss_pred -------cCCCcCCHHhhhccCCEEEEcccchhHHHH-HHHHHhcCCCCcEEEEecCch
Q 021401 165 -------ENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL 215 (313)
Q Consensus 165 -------~~~~~~~~~e~i~~ADvIiLavP~~a~~~v-i~ei~~~mk~gaiLid~~Gv~ 215 (313)
+...+.+.++++++||+|++++.-....++ ++++.+.|++..+|+|..++.
T Consensus 392 ~~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l 450 (473)
T PLN02353 392 MSPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVL 450 (473)
T ss_pred cccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCC
Confidence 001133567899999999999998887763 567777787666889988774
No 328
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=94.60 E-value=0.23 Score=45.60 Aligned_cols=83 Identities=17% Similarity=0.037 Sum_probs=56.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhccCCEEE
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIi 183 (313)
.-+|+| +++.|||-|..|..=++.|.+. |-+|++....- ++......+.++...+ ...+.++. ..+++|+
T Consensus 7 ~~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~-~~~~lvi 77 (210)
T COG1648 7 FLDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDL-DDAFLVI 77 (210)
T ss_pred EEEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhh-cCceEEE
Confidence 368999 9999999999999999999888 88877666543 2333344444421111 12344444 4599999
Q ss_pred EcccchhHHHHHH
Q 021401 184 LLISDAAQADNYE 196 (313)
Q Consensus 184 LavP~~a~~~vi~ 196 (313)
.+|.+....+-+.
T Consensus 78 aAt~d~~ln~~i~ 90 (210)
T COG1648 78 AATDDEELNERIA 90 (210)
T ss_pred EeCCCHHHHHHHH
Confidence 9999988766443
No 329
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=94.55 E-value=0.13 Score=47.07 Aligned_cols=68 Identities=22% Similarity=0.264 Sum_probs=46.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCC---cCCHHhhhccCCEEEEccc
Q 021401 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT---LGDIYETISGSDLVLLLIS 187 (313)
Q Consensus 112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~---~~~~~e~i~~ADvIiLavP 187 (313)
|||+||| .|..|..+++-+.+. |++|....|+.++... ..+....... .....+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~~~---~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKLAA---RQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhccc---cccceeecccccChhhhHhhhcCCceEEEecc
Confidence 7999999 799999999999999 9998777776443221 1232110111 2233468889999999874
Q ss_pred c
Q 021401 188 D 188 (313)
Q Consensus 188 ~ 188 (313)
.
T Consensus 72 ~ 72 (211)
T COG2910 72 A 72 (211)
T ss_pred C
Confidence 3
No 330
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=94.52 E-value=0.31 Score=47.80 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=49.8
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhhh
Q 021401 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (313)
Q Consensus 107 ~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~e~i 176 (313)
.++| .+|++||-+ ++..|++..+... |+++.+...+. ....+ .+++.|... ....++++++
T Consensus 153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~ 223 (334)
T PRK12562 153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKI--TLTEDIAAGV 223 (334)
T ss_pred CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeE--EEEcCHHHHh
Confidence 4778 999999976 7899999999888 99877665432 11122 233445321 0146899999
Q ss_pred ccCCEEEEcc
Q 021401 177 SGSDLVLLLI 186 (313)
Q Consensus 177 ~~ADvIiLav 186 (313)
+++|+|..-.
T Consensus 224 ~~aDvvyt~~ 233 (334)
T PRK12562 224 KGADFIYTDV 233 (334)
T ss_pred CCCCEEEEcC
Confidence 9999999865
No 331
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.43 E-value=0.42 Score=45.64 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=61.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc---cCCEEE
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLVL 183 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i~---~ADvIi 183 (313)
.+| .++.|+|.|.+|...++.++.. |.+.++..+.+++..+.+++.|...- +....+..+... ..|+|+
T Consensus 168 ~~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 168 LQG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEE
Confidence 468 9999999999999999999998 98433444444556778888886320 000112333332 279999
Q ss_pred EcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 184 LavP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
=++... ..++.....++++-.++.++
T Consensus 241 d~~G~~---~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 241 EVSGHP---SSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred ECCCCH---HHHHHHHHHhhcCCEEEEEc
Confidence 888743 23455556677777766554
No 332
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=94.42 E-value=0.26 Score=47.81 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=39.9
Q ss_pred EEEEEcc-cchHHHHHHHHHhchhhhcCCc--EEEEEecCCc--ccHHHHHHCCce---ecCCCcC-CHHhhhccCCEEE
Q 021401 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAGFT---EENGTLG-DIYETISGSDLVL 183 (313)
Q Consensus 113 kIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~--~s~~~A~~~G~~---~~~~~~~-~~~e~i~~ADvIi 183 (313)
||+|||. |.+|.++|..|... ++ ++++.+.... ..++. ..+.. ....+.. +..+.+++||+|+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL--~~~~~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADL--SHIPTAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchh--hcCCcCceEEEecCCCchHHHcCCCCEEE
Confidence 6899999 99999999998776 65 4444443321 11111 11111 0000001 2367899999999
Q ss_pred Eccc
Q 021401 184 LLIS 187 (313)
Q Consensus 184 LavP 187 (313)
++.-
T Consensus 73 itaG 76 (312)
T TIGR01772 73 IPAG 76 (312)
T ss_pred EeCC
Confidence 9764
No 333
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.42 E-value=0.21 Score=49.18 Aligned_cols=85 Identities=14% Similarity=0.109 Sum_probs=57.4
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhhccCCEEEEccc---
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS--- 187 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP--- 187 (313)
.+|||||+ .+|...+.++++. ..+.+++...+++ ++..+.|.+.|+.. ..+.+|++++.|++++++|
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~----~~~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~ 74 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA----PERFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI 74 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC----CCCcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence 68999999 5799999988876 0035654444444 34456777788752 5799999988888888875
Q ss_pred -chhHHHHHHHHHhcCCCCcEE
Q 021401 188 -DAAQADNYEKIFSCMKPNSIL 208 (313)
Q Consensus 188 -~~a~~~vi~ei~~~mk~gaiL 208 (313)
+..+.++..+.+ +.|+-|
T Consensus 75 P~~~H~e~a~~aL---~aGkHV 93 (343)
T TIGR01761 75 VGGQGSALARALL---ARGIHV 93 (343)
T ss_pred CCccHHHHHHHHH---hCCCeE
Confidence 345666655443 345543
No 334
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.39 E-value=0.24 Score=44.73 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=25.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhc
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~ 133 (313)
.+.|+. ++|.|||+|.+|..++++|...
T Consensus 16 Q~~L~~-s~VlIiG~gglG~evak~La~~ 43 (197)
T cd01492 16 QKRLRS-ARILLIGLKGLGAEIAKNLVLS 43 (197)
T ss_pred HHHHHh-CcEEEEcCCHHHHHHHHHHHHc
Confidence 467788 9999999999999999999998
No 335
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=94.36 E-value=0.16 Score=49.57 Aligned_cols=95 Identities=9% Similarity=0.024 Sum_probs=55.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHHCCc-----ee---cCCCc-CCHHhhhccCC
Q 021401 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGF-----TE---ENGTL-GDIYETISGSD 180 (313)
Q Consensus 112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~-----~~---~~~~~-~~~~e~i~~AD 180 (313)
++|+|+|+ |.+|..+++.|... ..+++....+..+. .........+ .. .+-.+ ...++...++|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~-----~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 75 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH-----PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVD 75 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCC
Confidence 47999995 99999999988765 13565444333211 0111111111 00 00001 01223558999
Q ss_pred EEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
+|++++|.....++.+++.. .|..++|.+|.
T Consensus 76 vVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg~ 106 (341)
T TIGR00978 76 IVFSALPSEVAEEVEPKLAE---AGKPVFSNASN 106 (341)
T ss_pred EEEEeCCHHHHHHHHHHHHH---CCCEEEECChh
Confidence 99999999887777765543 57778887764
No 336
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.35 E-value=0.096 Score=54.23 Aligned_cols=94 Identities=22% Similarity=0.151 Sum_probs=58.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-hccCCEEEEc
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLL 185 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~-i~~ADvIiLa 185 (313)
+++| +++.|+|.|-+|.+++..|.+. |.+|++.+|..++..+.+.+.+... ....+..+. ...+|+|+-+
T Consensus 376 ~~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~--~~~~~~~~~~~~~~diiINt 446 (529)
T PLN02520 376 PLAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQA--LTLADLENFHPEEGMILANT 446 (529)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCce--eeHhHhhhhccccCeEEEec
Confidence 4778 9999999999999999999998 9888777775444444444433110 001122222 2357888888
Q ss_pred ccchhHHH----HHHHHHhcCCCCcEEEEe
Q 021401 186 ISDAAQAD----NYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 186 vP~~a~~~----vi~ei~~~mk~gaiLid~ 211 (313)
+|...... -++ ...++++.++.|+
T Consensus 447 T~vGm~~~~~~~pl~--~~~l~~~~~v~D~ 474 (529)
T PLN02520 447 TSVGMQPNVDETPIS--KHALKHYSLVFDA 474 (529)
T ss_pred ccCCCCCCCCCCccc--HhhCCCCCEEEEe
Confidence 88765321 111 1235556666665
No 337
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=94.32 E-value=0.58 Score=47.71 Aligned_cols=75 Identities=17% Similarity=0.080 Sum_probs=41.0
Q ss_pred CEEEEEcc-cchHHHHHHHHHhc-hhhhcCCc--EEEEEecCCcccHHHHHH--CCc---eecCCCcCCHHhhhccCCEE
Q 021401 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDI--VVKVGLRKGSRSFAEARA--AGF---TEENGTLGDIYETISGSDLV 182 (313)
Q Consensus 112 kkIgIIG~-G~mG~AlA~~Lr~~-~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~---~~~~~~~~~~~e~i~~ADvI 182 (313)
-||+|||. |.+|.++|..|... +.+...++ ++++.+...+.....+.+ .+. ..+-....+..+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 78999999 99999999987643 10000022 444444333332222221 111 00000012456789999999
Q ss_pred EEcc
Q 021401 183 LLLI 186 (313)
Q Consensus 183 iLav 186 (313)
|+..
T Consensus 181 VitA 184 (444)
T PLN00112 181 LLIG 184 (444)
T ss_pred EECC
Confidence 9976
No 338
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.28 E-value=0.34 Score=45.03 Aligned_cols=48 Identities=21% Similarity=0.170 Sum_probs=37.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCce
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (313)
+| .++.|+|.|.+|...++.++.. |.+.++..+.+++..+.+++.|..
T Consensus 120 ~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 120 KG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHcCCc
Confidence 78 9999999999999999999998 986334445555556777777763
No 339
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=94.26 E-value=0.26 Score=44.46 Aligned_cols=35 Identities=23% Similarity=0.348 Sum_probs=29.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEE
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVG 146 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg 146 (313)
.+-|.. .+|.|||+|-+|..++++|... |+. +.+.
T Consensus 14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lv 49 (198)
T cd01485 14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIV 49 (198)
T ss_pred HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEE
Confidence 366778 9999999999999999999998 874 4344
No 340
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.21 E-value=0.17 Score=51.48 Aligned_cols=74 Identities=24% Similarity=0.238 Sum_probs=48.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc-ccHHHHHHC--CceecCCCcCCHHhhhccCCEEE
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAA--GFTEENGTLGDIYETISGSDLVL 183 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~--G~~~~~~~~~~~~e~i~~ADvIi 183 (313)
++.+ ++|.|||.|..|.++|+.|++. |++|.+.+.... +..+...+. |+....+ ....+.+.++|+||
T Consensus 4 ~~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g--~~~~~~~~~~d~vv 74 (498)
T PRK02006 4 DLQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFVGG--PFDPALLDGVDLVA 74 (498)
T ss_pred ccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEEeC--CCchhHhcCCCEEE
Confidence 3667 9999999999999999999999 998765553321 122222233 3322111 12345677899999
Q ss_pred Ec--ccch
Q 021401 184 LL--ISDA 189 (313)
Q Consensus 184 La--vP~~ 189 (313)
.. +|+.
T Consensus 75 ~sp~I~~~ 82 (498)
T PRK02006 75 LSPGLSPL 82 (498)
T ss_pred ECCCCCCc
Confidence 95 5653
No 341
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.19 E-value=0.14 Score=50.29 Aligned_cols=90 Identities=19% Similarity=0.161 Sum_probs=55.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhc-hhhhcCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhh-hccCCEEEEcc
Q 021401 112 NQIGVIG-WGSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (313)
Q Consensus 112 kkIgIIG-~G~mG~AlA~~Lr~~-~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~e~-i~~ADvIiLav 186 (313)
++|+||| .|..|+.+.+.|... + +..++......++ +.....- .... ..+.++. ..++|++++++
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~h----P~~~l~~laS~~saG~~~~~~~-~~~~-----v~~~~~~~~~~~Dvvf~a~ 74 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQF----PVGELYALASEESAGETLRFGG-KSVT-----VQDAAEFDWSQAQLAFFVA 74 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCC----CceEEEEEEccCcCCceEEECC-cceE-----EEeCchhhccCCCEEEECC
Confidence 7999999 599999999999874 1 1224332222211 1111000 0111 2233333 37899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
|.....++..+..+ .|+.|+|.++.
T Consensus 75 p~~~s~~~~~~~~~---~g~~VIDlS~~ 99 (336)
T PRK08040 75 GREASAAYAEEATN---AGCLVIDSSGL 99 (336)
T ss_pred CHHHHHHHHHHHHH---CCCEEEECChH
Confidence 98877777776644 58899998864
No 342
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.99 E-value=0.16 Score=51.13 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=49.9
Q ss_pred CEEEEEcccchHHHHHHHHHhchh----hhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLA----EAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLL 185 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~----~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLa 185 (313)
.+|||||+|.+|..+++.|.+..+ ..|.++++....+++.. .+....... .....+.++++. +.|+|+.+
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~---~~~~~~~~~-~~~~~d~~~ll~d~~iDvVve~ 79 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE---KDRGVDLPG-ILLTTDPEELVNDPDIDIVVEL 79 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh---hccCCCCcc-cceeCCHHHHhhCCCCCEEEEC
Confidence 579999999999999998865411 11223454333333221 111111100 012347888885 57999999
Q ss_pred ccchh-HHHHHHHHHhcCCCCcEEE
Q 021401 186 ISDAA-QADNYEKIFSCMKPNSILG 209 (313)
Q Consensus 186 vP~~a-~~~vi~ei~~~mk~gaiLi 209 (313)
++... ..+.+. ..|+.|+-|+
T Consensus 80 tg~~~~~~~~~~---~aL~~GkhVV 101 (426)
T PRK06349 80 MGGIEPARELIL---KALEAGKHVV 101 (426)
T ss_pred CCCchHHHHHHH---HHHHCCCeEE
Confidence 87643 233333 3344565544
No 343
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=93.97 E-value=0.16 Score=42.50 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.1
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEe
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~ 147 (313)
++|.|||+|.+|..++++|... |+ ++.+.+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD 33 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVD 33 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecC
Confidence 7899999999999999999998 87 455554
No 344
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.91 E-value=0.38 Score=47.87 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=62.6
Q ss_pred cccCCCCEEEEEcc----------cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh
Q 021401 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET 175 (313)
Q Consensus 106 ~~l~GikkIgIIG~----------G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~ 175 (313)
..+.| ++|+|.|+ -+-.-.+++.|.+. |.+|.+.+..-.. .. ....+. ..+.+++
T Consensus 309 ~~~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~-~~-~~~~~~------~~~~~~~ 373 (411)
T TIGR03026 309 GPLKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPE-EE-VKGLPL------IDDLEEA 373 (411)
T ss_pred hcccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-hh-hhhccc------CCCHHHH
Confidence 35799 99999998 44666778888888 9987666543221 11 111111 3478899
Q ss_pred hccCCEEEEcccchhHHH-HHHHHHhcCCCCcEEEEe
Q 021401 176 ISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 176 i~~ADvIiLavP~~a~~~-vi~ei~~~mk~gaiLid~ 211 (313)
+++||+|++++.-....+ -++++...|++ .+|+|.
T Consensus 374 ~~~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D~ 409 (411)
T TIGR03026 374 LKGADALVILTDHDEFKDLDLEKIKDLMKG-KVVVDT 409 (411)
T ss_pred HhCCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEeC
Confidence 999999999999888766 35667776764 477774
No 345
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.89 E-value=0.22 Score=49.44 Aligned_cols=71 Identities=21% Similarity=0.181 Sum_probs=46.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc---cHHHHHHCCceecCCCcCCHHhhhcc-CCEE
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---SFAEARAAGFTEENGTLGDIYETISG-SDLV 182 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~---s~~~A~~~G~~~~~~~~~~~~e~i~~-ADvI 182 (313)
++.| +++.|+|.|.+|.+.|+.|.+. |.+|++.++.... ..+...+.|+....+ ....+++.+ .|+|
T Consensus 2 ~~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~--~~~~~~~~~~~d~v 72 (447)
T PRK02472 2 EYQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVICG--SHPLELLDEDFDLM 72 (447)
T ss_pred CcCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEeC--CCCHHHhcCcCCEE
Confidence 3678 9999999999999999999999 9988766543221 123334456542100 123344454 8988
Q ss_pred EEcc
Q 021401 183 LLLI 186 (313)
Q Consensus 183 iLav 186 (313)
|...
T Consensus 73 V~s~ 76 (447)
T PRK02472 73 VKNP 76 (447)
T ss_pred EECC
Confidence 8854
No 346
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.88 E-value=0.24 Score=45.38 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.5
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhc
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~ 133 (313)
..-|.. ++|.|||+|-+|..+|++|...
T Consensus 16 q~~L~~-~~VlivG~GglGs~va~~La~~ 43 (228)
T cd00757 16 QEKLKN-ARVLVVGAGGLGSPAAEYLAAA 43 (228)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 356778 9999999999999999999998
No 347
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.86 E-value=2.4 Score=42.88 Aligned_cols=167 Identities=20% Similarity=0.192 Sum_probs=100.6
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccH--HHHHHC--Cceec----------------CCCc
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF--AEARAA--GFTEE----------------NGTL 169 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~--~~A~~~--G~~~~----------------~~~~ 169 (313)
|.++-|+|.|..+--+|..+++. +- ++-+..|.+.++. -.+.+. +.... +...
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~ 74 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH------GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVF 74 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc------cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhh
Confidence 46889999999999999999976 33 4545556543333 222222 21110 0113
Q ss_pred CCHHhhhccCCEEEEcccchhHHHHHHHH----HhcCCCCcEEEEecCch----h-hhhhhcccCCCCCccEEE------
Q 021401 170 GDIYETISGSDLVLLLISDAAQADNYEKI----FSCMKPNSILGLSHGFL----L-GHLQSIGLDFPKNIGVIA------ 234 (313)
Q Consensus 170 ~~~~e~i~~ADvIiLavP~~a~~~vi~ei----~~~mk~gaiLid~~Gv~----l-~~~~~~~~~l~~~i~vV~------ 234 (313)
.+.+++..+=|.+|||||-++..++++++ +..+| .+|.++..+. + ..+. ....++.||.
T Consensus 75 ~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk--~iVLvSPtfGS~~lv~~~l~----~~~~~~EVISFStY~g 148 (429)
T PF10100_consen 75 QDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVK--SIVLVSPTFGSHLLVKGFLN----DLGPDAEVISFSTYYG 148 (429)
T ss_pred cCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCC--EEEEECcccchHHHHHHHHH----hcCCCceEEEeecccc
Confidence 46677888889999999999999998765 34443 3555555442 2 2222 2233677775
Q ss_pred ----eccCCCchhHHHHHHhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCce-eecChhHHHh
Q 021401 235 ----VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT-FATTLEQEYK 299 (313)
Q Consensus 235 ----vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~L~~alG~~~~-~~tT~~~e~~ 299 (313)
.+...|-.+.-...+ ...++... +.+...++....++..+|-.-. +.+-++.|.+
T Consensus 149 dTr~~d~~~~~~vlt~~vK---------~kiYigSt-~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~r 208 (429)
T PF10100_consen 149 DTRWSDGEQPNRVLTTAVK---------KKIYIGST-HSNSPELDKLCRLLAQLGIQLEVMDNPLEAESR 208 (429)
T ss_pred cceeccCCCcceehhhhhh---------ceEEEEeC-CCCChHHHHHHHHHHHcCCeEEEeCChHhhhhc
Confidence 444444444433443 22334443 4556788888999999997654 5555555654
No 348
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=93.86 E-value=0.48 Score=45.45 Aligned_cols=89 Identities=20% Similarity=0.175 Sum_probs=56.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHh-chhhhcCC-cEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEE
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~-~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiL 184 (313)
+| .++.|+|.|.+|...++.+++ . | .+|++..+ ++...+.+++.|... ..++..+ ..|+|+=
T Consensus 163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~-~~~k~~~a~~~~~~~------~~~~~~~~~g~d~viD 228 (341)
T cd08237 163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGK-HQEKLDLFSFADETY------LIDDIPEDLAVDHAFE 228 (341)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeC-cHhHHHHHhhcCcee------ehhhhhhccCCcEEEE
Confidence 47 899999999999998888775 4 4 35554443 344455666555432 1112222 4799998
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEe
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~ 211 (313)
++........+++..+.++++-.++.+
T Consensus 229 ~~G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 229 CVGGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence 887432334666677778887766543
No 349
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.85 E-value=0.17 Score=49.04 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=40.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHH--HCC---ceecCC-CcCCHHhhhccCCEE
Q 021401 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG---FTEENG-TLGDIYETISGSDLV 182 (313)
Q Consensus 112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~--~~G---~~~~~~-~~~~~~e~i~~ADvI 182 (313)
+||+|||. |.+|.++|..|... ++ ++++.+.. .....+. ..+ ...... ...++.+.+++||+|
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDiv 72 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVV 72 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEE
Confidence 58999999 99999999999876 65 44444332 2111111 111 111000 011335789999999
Q ss_pred EEcc
Q 021401 183 LLLI 186 (313)
Q Consensus 183 iLav 186 (313)
+++.
T Consensus 73 vita 76 (310)
T cd01337 73 VIPA 76 (310)
T ss_pred EEeC
Confidence 9975
No 350
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=93.83 E-value=0.25 Score=52.03 Aligned_cols=72 Identities=21% Similarity=0.150 Sum_probs=50.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~ 168 (313)
.| ++|+|||.|..|.+.|..|++. |++|.+..+... ...+...+.|+...-++
T Consensus 309 ~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 309 RS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 58 9999999999999999999998 998877765532 12344456665321111
Q ss_pred ----cCCHHhhhccCCEEEEccc
Q 021401 169 ----LGDIYETISGSDLVLLLIS 187 (313)
Q Consensus 169 ----~~~~~e~i~~ADvIiLavP 187 (313)
..+++++..+.|.|++++-
T Consensus 382 ~v~~~~~~~~l~~~~DaV~latG 404 (639)
T PRK12809 382 EIGRDITFSDLTSEYDAVFIGVG 404 (639)
T ss_pred ccCCcCCHHHHHhcCCEEEEeCC
Confidence 1245566678999999874
No 351
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.82 E-value=0.4 Score=43.77 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=25.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhc
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~ 133 (313)
...|+. .+|.|||+|-+|..+++.|...
T Consensus 23 q~~L~~-~~V~ViG~GglGs~ia~~La~~ 50 (212)
T PRK08644 23 LEKLKK-AKVGIAGAGGLGSNIAVALARS 50 (212)
T ss_pred HHHHhC-CCEEEECcCHHHHHHHHHHHHc
Confidence 467888 9999999999999999999988
No 352
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=93.80 E-value=0.57 Score=45.26 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=50.9
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcc----cHHH-HHHCCceecCCCcCCHHhhhccC
Q 021401 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAE-ARAAGFTEENGTLGDIYETISGS 179 (313)
Q Consensus 106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~----s~~~-A~~~G~~~~~~~~~~~~e~i~~A 179 (313)
..++| .+|++||- ++...|++..+... |+++.+.....-. ..+. +++.|...+ ...+++++++++
T Consensus 148 g~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~a 218 (304)
T PRK00779 148 GSLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASIE--VTHDPKEAVKGA 218 (304)
T ss_pred CCcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeEE--EEcCHHHHhCCC
Confidence 45888 89999996 78999999999988 9987766543211 1111 455663211 145889999999
Q ss_pred CEEEEc
Q 021401 180 DLVLLL 185 (313)
Q Consensus 180 DvIiLa 185 (313)
|+|..-
T Consensus 219 Dvvy~~ 224 (304)
T PRK00779 219 DVVYTD 224 (304)
T ss_pred CEEEec
Confidence 999985
No 353
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=93.79 E-value=0.3 Score=45.51 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=25.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhc
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~ 133 (313)
...|.. ++|.|||+|-+|..++++|...
T Consensus 27 Q~~L~~-~~VliiG~GglGs~va~~La~~ 54 (245)
T PRK05690 27 QEKLKA-ARVLVVGLGGLGCAASQYLAAA 54 (245)
T ss_pred HHHhcC-CeEEEECCCHHHHHHHHHHHHc
Confidence 467788 9999999999999999999998
No 354
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=93.78 E-value=0.53 Score=39.54 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=23.7
Q ss_pred EEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEE
Q 021401 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVG 146 (313)
Q Consensus 113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg 146 (313)
+|.|||+|-+|..++++|... |+ ++.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~iv 29 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLI 29 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEE
Confidence 588999999999999999998 87 34444
No 355
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.73 E-value=0.38 Score=47.11 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=56.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCC---------------------cccHHHHHH---
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFAEARA--- 159 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~---------------------~~s~~~A~~--- 159 (313)
..-|.. .+|.|||+|-+|..+|+.|... |. ++.+.++.. .+....+.+
T Consensus 19 Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 19 QQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 466778 9999999999999999999988 87 555554321 111111111
Q ss_pred --CCce----ecCCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHh
Q 021401 160 --AGFT----EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (313)
Q Consensus 160 --~G~~----~~~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~ 200 (313)
..+. ..+-+..+..++++++|+||.++-......++++...
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~ 138 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQ 138 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHH
Confidence 1111 0001112345788999999999887766667776543
No 356
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.69 E-value=0.21 Score=50.59 Aligned_cols=71 Identities=20% Similarity=0.220 Sum_probs=46.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH--HHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE--ARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~--A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
.+.| ++|+|+|+|.=|.+.++.|++. |.+|++.+.+....... ..+.+..... .....+.+.++|+||.
T Consensus 5 ~~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~d~vV~ 75 (468)
T PRK04690 5 QLEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLVE--TEASAQRLAAFDVVVK 75 (468)
T ss_pred hcCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEEe--CCCChHHccCCCEEEE
Confidence 3568 9999999999999999999999 99987776443221111 1222322111 1123456788999988
Q ss_pred cc
Q 021401 185 LI 186 (313)
Q Consensus 185 av 186 (313)
.-
T Consensus 76 Sp 77 (468)
T PRK04690 76 SP 77 (468)
T ss_pred CC
Confidence 43
No 357
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.64 E-value=0.21 Score=49.75 Aligned_cols=93 Identities=14% Similarity=0.174 Sum_probs=53.8
Q ss_pred CCEEEEEcc-cchHHHHHH-HHHhchhhhcCCcE---EEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 111 INQIGVIGW-GSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 111 ikkIgIIG~-G~mG~AlA~-~Lr~~~~~~~~G~~---Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
|++|||||+ |..|+.+.+ .|... .+. +.......+ ......-.|....-....+ ++.++++|+++++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~~ss~~s-g~~~~~f~g~~~~v~~~~~-~~~~~~~Divf~a 72 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVFFSTSQA-GGAAPSFGGKEGTLQDAFD-IDALKKLDIIITC 72 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEEecchhh-CCcccccCCCcceEEecCC-hhHhcCCCEEEEC
Confidence 478999995 999999998 66555 553 433222110 0000000111000000112 2445889999999
Q ss_pred ccchhHHHHHHHHHhcCCCC--cEEEEecCc
Q 021401 186 ISDAAQADNYEKIFSCMKPN--SILGLSHGF 214 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~mk~g--aiLid~~Gv 214 (313)
+|.....++..+... .| ++|+|.+|.
T Consensus 73 ~~~~~s~~~~~~~~~---aG~~~~VID~Ss~ 100 (369)
T PRK06598 73 QGGDYTNEVYPKLRA---AGWQGYWIDAAST 100 (369)
T ss_pred CCHHHHHHHHHHHHh---CCCCeEEEECChH
Confidence 998877777776544 47 678988864
No 358
>PRK09414 glutamate dehydrogenase; Provisional
Probab=93.63 E-value=0.2 Score=51.02 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=52.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec----------CCcccH-HHHHHC-C----ceec-CCC
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR----------KGSRSF-AEARAA-G----FTEE-NGT 168 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r----------~~~~s~-~~A~~~-G----~~~~-~~~ 168 (313)
.+|+| ++|+|.|+|++|...|+.|.+. |.+|+...+ -+...+ +...+. | +... +..
T Consensus 228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~ 300 (445)
T PRK09414 228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAE 300 (445)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCe
Confidence 57899 9999999999999999999998 988765534 111111 111111 1 1100 000
Q ss_pred cCCHHhhhc-cCCEEEEcccchhHHH-HHHHHH
Q 021401 169 LGDIYETIS-GSDLVLLLISDAAQAD-NYEKIF 199 (313)
Q Consensus 169 ~~~~~e~i~-~ADvIiLavP~~a~~~-vi~ei~ 199 (313)
..+.++++. +|||++-|...+.+.. ....+.
T Consensus 301 ~i~~~~i~~~d~DVliPaAl~n~It~~~a~~i~ 333 (445)
T PRK09414 301 YLEGGSPWSVPCDIALPCATQNELDEEDAKTLI 333 (445)
T ss_pred ecCCccccccCCcEEEecCCcCcCCHHHHHHHH
Confidence 113334333 7999999988776643 555554
No 359
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.58 E-value=0.24 Score=48.42 Aligned_cols=94 Identities=14% Similarity=0.098 Sum_probs=54.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH-HHHHHCCcee--------cCCC--cCCHHhhhccC
Q 021401 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTE--------ENGT--LGDIYETISGS 179 (313)
Q Consensus 112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~--------~~~~--~~~~~e~i~~A 179 (313)
++|+|+| .|.+|..+.+.|.+. ..+++....+..+..- ......++.. .+-. ..+. +.+.++
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-----p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~ 77 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-----PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDDV 77 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcCC
Confidence 7899998 899999999999875 1335443323321100 0100011100 0000 1133 345899
Q ss_pred CEEEEcccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 180 DvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
|+|++++|.....++.+.+.. .|..++|.+|.
T Consensus 78 DvVf~a~p~~~s~~~~~~~~~---~G~~vIDls~~ 109 (349)
T PRK08664 78 DIVFSALPSDVAGEVEEEFAK---AGKPVFSNASA 109 (349)
T ss_pred CEEEEeCChhHHHHHHHHHHH---CCCEEEECCch
Confidence 999999999876666655433 57778887764
No 360
>PLN00106 malate dehydrogenase
Probab=93.58 E-value=0.19 Score=48.95 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=41.7
Q ss_pred CEEEEEcc-cchHHHHHHHHHhchhhhcCCc--EEEEEecCCccc--HHHHHHCC-ceecC-CCcCCHHhhhccCCEEEE
Q 021401 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRS--FAEARAAG-FTEEN-GTLGDIYETISGSDLVLL 184 (313)
Q Consensus 112 kkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s--~~~A~~~G-~~~~~-~~~~~~~e~i~~ADvIiL 184 (313)
.||+|||. |.+|.++|..|... ++ ++.+.+....+. ++...... ....+ ....+..+.+++||+||+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence 79999999 99999999999866 54 454444332111 11110000 11101 012355789999999999
Q ss_pred cc
Q 021401 185 LI 186 (313)
Q Consensus 185 av 186 (313)
+.
T Consensus 93 tA 94 (323)
T PLN00106 93 PA 94 (323)
T ss_pred eC
Confidence 65
No 361
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=93.58 E-value=0.11 Score=51.58 Aligned_cols=66 Identities=18% Similarity=0.138 Sum_probs=43.5
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecC-CCcCCHHhhhccCCEEEE
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLL 184 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~-~~~~~~~e~i~~ADvIiL 184 (313)
++|||||-|.+|.=++...+.. |+++++.+ .++.+-........+..+ +....+.++++.||+|-.
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLd-p~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARL------GIKVIVLD-PDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhc------CCEEEEec-CCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 8999999999999999999999 99976555 323222222222222100 001246688899999975
No 362
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=93.56 E-value=0.14 Score=50.25 Aligned_cols=65 Identities=22% Similarity=0.181 Sum_probs=41.8
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEEE
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~i~~ADvIiL 184 (313)
+++|||||-|.+|.-+++.+++. |+++++........... ....... ....+ +.++++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~pa~~-~ad~~~~--~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDSPAAQ-VADEVIV--ADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchhH-hCceEEe--cCCCCHHHHHHHHhcCCEEEe
Confidence 48999999999999999999999 99977665432211111 1122221 01223 4567788998754
No 363
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=93.56 E-value=0.16 Score=50.16 Aligned_cols=84 Identities=14% Similarity=0.036 Sum_probs=50.6
Q ss_pred CEEEEEcccchHHHH-HHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc----eecCC-C---------c--CCHHh
Q 021401 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF----TEENG-T---------L--GDIYE 174 (313)
Q Consensus 112 kkIgIIG~G~mG~Al-A~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~----~~~~~-~---------~--~~~~e 174 (313)
|+|.++|.|+||.+. +..|.+. |++|++.. .++...+.-.+.|. +.... . . .+.++
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd-~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVD-VNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC------CCeEEEEE-CCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence 689999999999876 6667667 88865555 33334444444453 11111 0 0 02122
Q ss_pred ---hhccCCEEEEcccchhHHHHHHHHHhcC
Q 021401 175 ---TISGSDLVLLLISDAAQADNYEKIFSCM 202 (313)
Q Consensus 175 ---~i~~ADvIiLavP~~a~~~vi~ei~~~m 202 (313)
.+.++|+|+++++++....++..+.+.|
T Consensus 74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L 104 (381)
T PRK02318 74 VIEAIAEADLVTTAVGPNILPFIAPLIAKGL 104 (381)
T ss_pred HHHHhcCCCEEEeCCCcccchhHHHHHHHHH
Confidence 4458899999999877655555444433
No 364
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=93.55 E-value=0.17 Score=43.84 Aligned_cols=90 Identities=16% Similarity=0.203 Sum_probs=54.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
....+| ++|++||+ +.+ +...|+.. +.++.+.++.. .... ....++. ....++++++||+|++
T Consensus 6 ~~~~~~-~~V~~VG~--f~P-~~~~l~~~------~~~v~v~d~~~-~~~~-~~~~~~~-----~~~~~~~l~~aD~vii 68 (147)
T PF04016_consen 6 LEIGPG-DKVGMVGY--FQP-LVEKLKER------GAEVRVFDLNP-DNIG-EEPGDVP-----DEDAEEILPWADVVII 68 (147)
T ss_dssp CCTTTT-SEEEEES----HC-CHHHHCCC------CSEEEEEESSG-GG---SSCT-EE-----GGGHHHHGGG-SEEEE
T ss_pred hhhcCC-CEEEEEcC--cHH-HHHHHhcC------CCCEEEEECCC-CCCC-CCCCcCC-----HHHHHHHHccCCEEEE
Confidence 355677 99999996 222 67777766 77887777653 2211 0112232 3477899999999988
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
.-. +-...-+++++++.++++.++..+
T Consensus 69 TGs-TlvN~Ti~~iL~~~~~~~~vil~G 95 (147)
T PF04016_consen 69 TGS-TLVNGTIDDILELARNAREVILYG 95 (147)
T ss_dssp ECH-HCCTTTHHHHHHHTTTSSEEEEES
T ss_pred Eee-eeecCCHHHHHHhCccCCeEEEEe
Confidence 532 222246777777777777766554
No 365
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=93.54 E-value=0.55 Score=44.24 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=65.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH----HCCceecCCCcCCHHhhhc---cCC
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETIS---GSD 180 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~~~e~i~---~AD 180 (313)
|.| ++|-=||+| |+.++.-|.+. |.+| .|.|-.++..+.|+ +.|+.. +-...+.+|+.. +-|
T Consensus 58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~V-tgiD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPG-LRVLDVGCG--GGILSEPLARL------GASV-TGIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCC-CeEEEecCC--ccHhhHHHHHC------CCee-EEecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence 899 999999999 67888888777 8875 68887777776665 344431 112345666665 579
Q ss_pred EEEE-----cccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 181 LVLL-----LISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 181 vIiL-----avP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
+|+. |+|+... ++.....++|||-++.++.
T Consensus 127 vV~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 127 VVTCMEVLEHVPDPES--FLRACAKLVKPGGILFLST 161 (243)
T ss_pred EEEEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEec
Confidence 8876 6665443 7788889999998887653
No 366
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.54 E-value=0.24 Score=48.93 Aligned_cols=89 Identities=12% Similarity=0.143 Sum_probs=55.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHh-chhhhcCCcE---EEEEecCC--cccHHHHHHCCceecCCCcCCHHhhhccCCEEEE
Q 021401 112 NQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDIV---VKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 112 kkIgIIG~-G~mG~AlA~~Lr~-~~~~~~~G~~---Vivg~r~~--~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
++|||||+ |..|+.+.+.|.+ . .++ +....... .+......+ ....+ ..+.+ .+++.|++++
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~~-~~~~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKIN-SFEGVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCHH-HhcCCCEEEE
Confidence 68999995 9999999999984 4 444 32222221 111111100 11110 11333 4589999999
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
++|.....++..+.. +.|+.|+|.++.
T Consensus 75 a~~~~~s~~~~~~~~---~~G~~VID~Ss~ 101 (347)
T PRK06728 75 SAGGEVSRQFVNQAV---SSGAIVIDNTSE 101 (347)
T ss_pred CCChHHHHHHHHHHH---HCCCEEEECchh
Confidence 999887777777654 358899998864
No 367
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=93.49 E-value=0.16 Score=48.26 Aligned_cols=85 Identities=15% Similarity=0.107 Sum_probs=56.7
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-hccCCEEEEcccch
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDA 189 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~-i~~ADvIiLavP~~ 189 (313)
+++.|+|.|-.+.+++..|.+. |. ++.+.+|..++..+.+...+.. . . ++. ...+|+||-++|..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~-----~-~-~~~~~~~~dlvINaTp~G 189 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYE-----W-R-PDLGGIEADILVNVTPIG 189 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCc-----c-h-hhcccccCCEEEECCccc
Confidence 7899999999999999999988 87 5888888765555555544432 1 1 111 25689999999965
Q ss_pred hHHH------HHHHHHhcCCCCcEEEEe
Q 021401 190 AQAD------NYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 190 a~~~------vi~ei~~~mk~gaiLid~ 211 (313)
.... -++ ...++++.++.|+
T Consensus 190 m~~~~~~~~~pi~--~~~l~~~~~v~D~ 215 (272)
T PRK12550 190 MAGGPEADKLAFP--EAEIDAASVVFDV 215 (272)
T ss_pred cCCCCccccCCCC--HHHcCCCCEEEEe
Confidence 4311 111 1335666777765
No 368
>PRK10537 voltage-gated potassium channel; Provisional
Probab=93.49 E-value=0.48 Score=47.45 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=54.0
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC--ceecCCCcCCHHh----hhccCCEEEEc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYE----TISGSDLVLLL 185 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G--~~~~~~~~~~~~e----~i~~ADvIiLa 185 (313)
..+-|+|+|.+|..+++.|++. |.++++.+.. . .+...+.| ++. +...+.+. -+++||.|+++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d-~--~~~~~~~g~~vI~--GD~td~e~L~~AgI~~A~aVI~~ 309 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPL-G--LEHRLPDDADLIP--GDSSDSAVLKKAGAARARAILAL 309 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECc-h--hhhhccCCCcEEE--eCCCCHHHHHhcCcccCCEEEEc
Confidence 5688999999999999999988 8876665533 1 12333333 332 12223321 35689999999
Q ss_pred ccchhHHHHHHHHHhcCCCC-cEEEE
Q 021401 186 ISDAAQADNYEKIFSCMKPN-SILGL 210 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~mk~g-aiLid 210 (313)
+++++..-.+-.....+.|+ .++.-
T Consensus 310 t~dD~~Nl~ivL~ar~l~p~~kIIa~ 335 (393)
T PRK10537 310 RDNDADNAFVVLAAKEMSSDVKTVAA 335 (393)
T ss_pred CCChHHHHHHHHHHHHhCCCCcEEEE
Confidence 98877655443333344443 34443
No 369
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=93.48 E-value=0.53 Score=45.27 Aligned_cols=91 Identities=15% Similarity=0.267 Sum_probs=67.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcccc
Q 021401 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (313)
Q Consensus 112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~--ADvIiLavP~ 188 (313)
.+|.|.| .|.+|..+-++++.. |.+++++..++.- ...-.|+.. ..+.+|+-+. .|+.++++|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~~~---~~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa 73 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPGKG---GTTVLGLPV----FDSVKEAVEETGANASVIFVPA 73 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCCCC---cceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 5788999 799999999999998 8876666655410 111245552 5578887765 6999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEecCchh
Q 021401 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (313)
Q Consensus 189 ~a~~~vi~ei~~~mk~gaiLid~~Gv~l 216 (313)
....+.+++.... .-..+++.++||..
T Consensus 74 ~~v~~~l~e~~~~-Gvk~avIis~Gf~e 100 (286)
T TIGR01019 74 PFAADAIFEAIDA-GIELIVCITEGIPV 100 (286)
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 9999988876652 23467788999853
No 370
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=93.48 E-value=0.59 Score=45.68 Aligned_cols=91 Identities=11% Similarity=0.181 Sum_probs=68.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcc
Q 021401 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (313)
Q Consensus 112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~e~i~~--ADvIiLav 186 (313)
.+|-|-| .|..|.-.++.+++. |-+|+.|..++. .... ..|+.. +.+..|+.+. .|+.++.+
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence 6788889 599999999999999 999888887653 2111 125543 5688898887 99999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCchh
Q 021401 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv~l 216 (313)
|+....+.+.+..+. .-..+|+.+.|+..
T Consensus 97 Pa~~v~dai~Ea~~a-GI~~~ViiteGfpe 125 (317)
T PTZ00187 97 PPPHAASAIIEAIEA-EIPLVVCITEGIPQ 125 (317)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEECCCCch
Confidence 999998877765442 12347778889853
No 371
>PLN03075 nicotianamine synthase; Provisional
Probab=93.47 E-value=0.3 Score=47.26 Aligned_cols=120 Identities=14% Similarity=0.146 Sum_probs=71.8
Q ss_pred ccccchhhhhhcCCCccccc--ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC--
Q 021401 85 SLANRDEFIVRGGRDLFKLL--PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-- 160 (313)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~~~--~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-- 160 (313)
+|.+|..| .+=++-++.++ ...... ++|..||+|..|-+-.-.++... .+- .+++.+.+++..+.|++.
T Consensus 98 ~Fpy~~nY-~~L~~lE~~~L~~~~~~~p-~~VldIGcGpgpltaiilaa~~~----p~~-~~~giD~d~~ai~~Ar~~~~ 170 (296)
T PLN03075 98 LFPYYNNY-LKLSKLEFDLLSQHVNGVP-TKVAFVGSGPLPLTSIVLAKHHL----PTT-SFHNFDIDPSANDVARRLVS 170 (296)
T ss_pred cCCchHHH-HHHHHHHHHHHHHhhcCCC-CEEEEECCCCcHHHHHHHHHhcC----CCC-EEEEEeCCHHHHHHHHHHhh
Confidence 47777777 65555544432 122255 99999999998775544444331 122 357888877666655542
Q ss_pred ---Cceec-CCCcCCHHhh---hccCCEEEEccc----chhHHHHHHHHHhcCCCCcEEEEe
Q 021401 161 ---GFTEE-NGTLGDIYET---ISGSDLVLLLIS----DAAQADNYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 161 ---G~~~~-~~~~~~~~e~---i~~ADvIiLavP----~~a~~~vi~ei~~~mk~gaiLid~ 211 (313)
|+... .....+..+. ..+-|+|++.+= .....++++.+...|+||.+++.-
T Consensus 171 ~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr 232 (296)
T PLN03075 171 SDPDLSKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLR 232 (296)
T ss_pred hccCccCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEe
Confidence 22100 0001222222 468999999851 134456999999999999988744
No 372
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=93.37 E-value=0.44 Score=38.71 Aligned_cols=82 Identities=23% Similarity=0.272 Sum_probs=47.7
Q ss_pred cccchHHHHHHHHHhchhhhcCCcEEEEEecCC---cccHHHHHHCCceecCCCcCCHHhhhc--cCCEEEEcccchhHH
Q 021401 118 GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA 192 (313)
Q Consensus 118 G~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~---~~s~~~A~~~G~~~~~~~~~~~~e~i~--~ADvIiLavP~~a~~ 192 (313)
|+|.||+++++.|.+.-.. .++++....+++ .... .....+... ..++++++. +.|+||=+++.....
T Consensus 1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~dvvVE~t~~~~~~ 73 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDW-AASFPDEAF----TTDLEELIDDPDIDVVVECTSSEAVA 73 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTH-HHHHTHSCE----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhh-hhhcccccc----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence 8999999999999876111 244544333333 1111 111122211 458889988 999999999988887
Q ss_pred HHHHHHHhcCCCCcEEE
Q 021401 193 DNYEKIFSCMKPNSILG 209 (313)
Q Consensus 193 ~vi~ei~~~mk~gaiLi 209 (313)
+.+.+.+. .|.-|+
T Consensus 74 ~~~~~~L~---~G~~VV 87 (117)
T PF03447_consen 74 EYYEKALE---RGKHVV 87 (117)
T ss_dssp HHHHHHHH---TTCEEE
T ss_pred HHHHHHHH---CCCeEE
Confidence 77776554 455444
No 373
>PRK15076 alpha-galactosidase; Provisional
Probab=93.36 E-value=0.18 Score=51.01 Aligned_cols=75 Identities=20% Similarity=0.207 Sum_probs=41.9
Q ss_pred CCEEEEEcccchHHHHHH--HHHhchhhhcCCcEEEEEecCCcccHHHH--------HHCCceecCCCcCCHHhhhccCC
Q 021401 111 INQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA--------RAAGFTEENGTLGDIYETISGSD 180 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~--~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A--------~~~G~~~~~~~~~~~~e~i~~AD 180 (313)
++||+|||.|+||-+.+. .+... ..-.+.+|++.+ .+++..+.+ ...+...+-..+++..+++++||
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~--~~l~~~evvLvD-id~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dAD 77 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSV--PALRDAEIALMD-IDPERLEESEIVARKLAESLGASAKITATTDRREALQGAD 77 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhC--ccCCCCEEEEEC-CCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCC
Confidence 479999999999866655 44311 011144655444 433322211 11221100011357789999999
Q ss_pred EEEEcccc
Q 021401 181 LVLLLISD 188 (313)
Q Consensus 181 vIiLavP~ 188 (313)
+|+.++-.
T Consensus 78 fVv~ti~v 85 (431)
T PRK15076 78 YVINAIQV 85 (431)
T ss_pred EEeEeeee
Confidence 99998754
No 374
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=93.34 E-value=0.28 Score=47.19 Aligned_cols=66 Identities=21% Similarity=0.229 Sum_probs=39.3
Q ss_pred EEcccchHHHHHHHHHhchhhhcCCc--EEEEEecCCcccHHHHHHCC----ceecC-CCcCCHHhhhccCCEEEEccc
Q 021401 116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEEN-GTLGDIYETISGSDLVLLLIS 187 (313)
Q Consensus 116 IIG~G~mG~AlA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G----~~~~~-~~~~~~~e~i~~ADvIiLavP 187 (313)
|||.|.+|.++|..|... ++ ++.+.+.........+.+.. +...+ .......+.+++||+||++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag 73 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG 73 (299)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence 799999999999999877 65 45555443332222332211 00000 001234578999999999764
No 375
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.34 E-value=0.33 Score=48.49 Aligned_cols=71 Identities=21% Similarity=0.159 Sum_probs=46.4
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHH--CCceecCCCcCCHHhhhccCCEEE
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVL 183 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~--~G~~~~~~~~~~~~e~i~~ADvIi 183 (313)
++.+ ++|.|+|.|..|.+.|+.|.+. |.+|.+.+..... ..+..++ .|+....+ ...++...++|+||
T Consensus 2 ~~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g--~~~~~~~~~~d~vv 72 (445)
T PRK04308 2 TFQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFYTG--RLKDALDNGFDILA 72 (445)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEEeC--CCCHHHHhCCCEEE
Confidence 3568 9999999999999999999999 9987766544322 1222222 36542111 11234557899999
Q ss_pred Ecc
Q 021401 184 LLI 186 (313)
Q Consensus 184 Lav 186 (313)
...
T Consensus 73 ~sp 75 (445)
T PRK04308 73 LSP 75 (445)
T ss_pred ECC
Confidence 843
No 376
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=93.34 E-value=0.7 Score=44.79 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=58.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhhccCCEEEEcc
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~-~~~~~e~i~~ADvIiLav 186 (313)
.| .++.|+|.|.+|...++.++.. |.+|++......+..+.+++.|...- +.. .....+.....|+|+=++
T Consensus 183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 67 8999999999999999999998 98876655544444445566776310 000 001222333579998887
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe
Q 021401 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLid~ 211 (313)
... ..+++....++++-.++.+
T Consensus 256 g~~---~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 256 SAV---HALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCH---HHHHHHHHHhcCCcEEEEe
Confidence 632 2344555667777665544
No 377
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.32 E-value=0.22 Score=50.71 Aligned_cols=71 Identities=25% Similarity=0.304 Sum_probs=48.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCccc-H--HHHHHCCceecCCCcCCHHhhhccCCEE
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-F--AEARAAGFTEENGTLGDIYETISGSDLV 182 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~--~~A~~~G~~~~~~~~~~~~e~i~~ADvI 182 (313)
..+.| |+|.|+|+|.=|.+.++.|++. |..|++.+++.... . ......++....+. ...+-..++|+|
T Consensus 3 ~~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~--~~~~~~~~~d~v 73 (448)
T COG0771 3 EDFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGS--HDDEDLAEFDLV 73 (448)
T ss_pred ccccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCc--cchhccccCCEE
Confidence 44557 9999999999999999999999 99988777553321 1 12223454321111 122567889999
Q ss_pred EEc
Q 021401 183 LLL 185 (313)
Q Consensus 183 iLa 185 (313)
++.
T Consensus 74 V~S 76 (448)
T COG0771 74 VKS 76 (448)
T ss_pred EEC
Confidence 984
No 378
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.30 E-value=0.86 Score=42.36 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=55.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhhccCCEEEE
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~i~~ADvIiL 184 (313)
-.++| +++.|||-|.+|..=++.|.+. |.+|.+....-.+......+.| +.-.... ... +-+.++++|+.
T Consensus 21 l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~~r~-~~~-~dl~g~~LVia 91 (223)
T PRK05562 21 LLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLIKGN-YDK-EFIKDKHLIVI 91 (223)
T ss_pred EECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCC-CCh-HHhCCCcEEEE
Confidence 47779 9999999999999988889888 8877666543222222222333 2211111 122 34689999999
Q ss_pred cccchhHHHHHHHHH
Q 021401 185 LISDAAQADNYEKIF 199 (313)
Q Consensus 185 avP~~a~~~vi~ei~ 199 (313)
||.+....+-+.+..
T Consensus 92 ATdD~~vN~~I~~~a 106 (223)
T PRK05562 92 ATDDEKLNNKIRKHC 106 (223)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999988776555443
No 379
>PRK08328 hypothetical protein; Provisional
Probab=93.27 E-value=0.56 Score=43.31 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=25.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhc
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~ 133 (313)
...|.+ .+|.|||+|-+|..++++|...
T Consensus 22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~ 49 (231)
T PRK08328 22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA 49 (231)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 467888 9999999999999999999988
No 380
>PLN02527 aspartate carbamoyltransferase
Probab=93.22 E-value=0.6 Score=45.21 Aligned_cols=72 Identities=17% Similarity=0.126 Sum_probs=49.4
Q ss_pred cccCCCCEEEEEccc---chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhhcc
Q 021401 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISG 178 (313)
Q Consensus 106 ~~l~GikkIgIIG~G---~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~e~i~~ 178 (313)
..++| .||++||-+ ++..|++..+... .|+++.+...++ ....+.+++.|...+ ...++++++++
T Consensus 147 g~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~ 218 (306)
T PLN02527 147 GRLDG-IKVGLVGDLANGRTVRSLAYLLAKY-----EDVKIYFVAPDVVKMKDDIKDYLTSKGVEWE--ESSDLMEVASK 218 (306)
T ss_pred CCcCC-CEEEEECCCCCChhHHHHHHHHHhc-----CCCEEEEECCCccCCCHHHHHHHHHcCCEEE--EEcCHHHHhCC
Confidence 45888 999999976 5789999887763 177776665432 122344555554211 14588999999
Q ss_pred CCEEEEc
Q 021401 179 SDLVLLL 185 (313)
Q Consensus 179 ADvIiLa 185 (313)
||+|...
T Consensus 219 aDvvyt~ 225 (306)
T PLN02527 219 CDVLYQT 225 (306)
T ss_pred CCEEEEC
Confidence 9999984
No 381
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=93.22 E-value=0.18 Score=48.09 Aligned_cols=76 Identities=21% Similarity=0.126 Sum_probs=51.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHC----Cc--eecCCCcCCHHhhhccC
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GF--TEENGTLGDIYETISGS 179 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~----G~--~~~~~~~~~~~e~i~~A 179 (313)
++.| +++.|+|.|=.|.+++..|.+. |. ++.+.+|..++..+.+.+. +. +. .....+..+.+.++
T Consensus 124 ~~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 195 (283)
T PRK14027 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVV-GVDARGIEDVIAAA 195 (283)
T ss_pred CcCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEE-ecCHhHHHHHHhhc
Confidence 5678 9999999999999999999988 87 5677777654444444332 11 11 00001123456789
Q ss_pred CEEEEcccchh
Q 021401 180 DLVLLLISDAA 190 (313)
Q Consensus 180 DvIiLavP~~a 190 (313)
|+||-++|...
T Consensus 196 divINaTp~Gm 206 (283)
T PRK14027 196 DGVVNATPMGM 206 (283)
T ss_pred CEEEEcCCCCC
Confidence 99999999654
No 382
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=93.19 E-value=0.33 Score=47.53 Aligned_cols=72 Identities=18% Similarity=0.158 Sum_probs=50.4
Q ss_pred cccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccH----HHHHHCCceecCCCcCCHHhh
Q 021401 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYET 175 (313)
Q Consensus 106 ~~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~----~~A~~~G~~~~~~~~~~~~e~ 175 (313)
..++| .+|++||-+ ++..|++..+... |+++.+...+. +... +.+.+.|... ....+++++
T Consensus 151 g~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~ea 221 (332)
T PRK04284 151 KPYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKI--TITDDIDEG 221 (332)
T ss_pred CCcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeE--EEEcCHHHH
Confidence 35788 999999975 8889999999888 99877665432 1122 2233456321 014689999
Q ss_pred hccCCEEEEcc
Q 021401 176 ISGSDLVLLLI 186 (313)
Q Consensus 176 i~~ADvIiLav 186 (313)
+++||+|..-+
T Consensus 222 ~~~aDvvy~~~ 232 (332)
T PRK04284 222 VKGSDVIYTDV 232 (332)
T ss_pred hCCCCEEEECC
Confidence 99999999853
No 383
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=93.16 E-value=0.68 Score=44.94 Aligned_cols=103 Identities=17% Similarity=0.156 Sum_probs=72.9
Q ss_pred ccchhHHHHHHHH--HhcCCCCcEEEEe-cCc---hhhhhhhcccCCCCCccEEEeccCCCchhHHHHHHhcccccCCCc
Q 021401 186 ISDAAQADNYEKI--FSCMKPNSILGLS-HGF---LLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (313)
Q Consensus 186 vP~~a~~~vi~ei--~~~mk~gaiLid~-~Gv---~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~ 259 (313)
+++.....++++. .-.++||.+|+.. +|- .+..+.. ..+.+++.+||.++..+.+.+-+. .|+
T Consensus 41 vKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa-----~~Gy~~iivmP~~~S~er~~~l~a------~GA 109 (300)
T COG0031 41 VKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAA-----AKGYRLIIVMPETMSQERRKLLRA------LGA 109 (300)
T ss_pred hhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHH-----HcCCcEEEEeCCCCCHHHHHHHHH------cCC
Confidence 5566666677633 3459999999965 443 3444433 247899999999999998887775 589
Q ss_pred eEEEEec-cCCCHHHHHHHHHHHHHcCCCc------eeecChhHHHh
Q 021401 260 NSSFAVH-QDVDGRATNVALGWSVALGSPF------TFATTLEQEYK 299 (313)
Q Consensus 260 ~~iitp~-~d~~~ea~e~a~~L~~alG~~~------~~~tT~~~e~~ 299 (313)
..+++|. +.....++++++++........ --...++.||+
T Consensus 110 evi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~ 156 (300)
T COG0031 110 EVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYE 156 (300)
T ss_pred EEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHh
Confidence 9999998 3436779999999999996522 24456666664
No 384
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=93.11 E-value=0.5 Score=45.67 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=49.9
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccHHH----HHHCCceecCCCcCCHHhhh
Q 021401 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE----ARAAGFTEENGTLGDIYETI 176 (313)
Q Consensus 106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~----A~~~G~~~~~~~~~~~~e~i 176 (313)
..|+| .+|++||- .++..|++..+... |+++.+...+.- ...+. +.+.|...+ ...++++++
T Consensus 144 g~l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 214 (304)
T TIGR00658 144 GKLKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVE--LTHDPVEAV 214 (304)
T ss_pred CCCCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 44788 99999995 78889999999888 998776654321 11111 344553210 145889999
Q ss_pred ccCCEEEEcc
Q 021401 177 SGSDLVLLLI 186 (313)
Q Consensus 177 ~~ADvIiLav 186 (313)
++||+|..-+
T Consensus 215 ~~aDvvy~~~ 224 (304)
T TIGR00658 215 KGADVIYTDV 224 (304)
T ss_pred CCCCEEEEcC
Confidence 9999999853
No 385
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=93.07 E-value=0.3 Score=47.25 Aligned_cols=67 Identities=16% Similarity=0.206 Sum_probs=47.8
Q ss_pred cccCCCCEEEEEcc---cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEE
Q 021401 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (313)
Q Consensus 106 ~~l~GikkIgIIG~---G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvI 182 (313)
..++| .||++||- +++..|++..+... |+++.+...++-.... . ..+. ...+++|++++||+|
T Consensus 152 G~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~~~--~-~~~~----~~~d~~ea~~~aDvv 217 (305)
T PRK00856 152 GRLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLPEG--M-PEYG----VHTDLDEVIEDADVV 217 (305)
T ss_pred CCCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCccc--c-cceE----EECCHHHHhCCCCEE
Confidence 45888 99999996 58999999999999 9987766544321100 0 0112 245889999999998
Q ss_pred EEcc
Q 021401 183 LLLI 186 (313)
Q Consensus 183 iLav 186 (313)
....
T Consensus 218 yt~~ 221 (305)
T PRK00856 218 MMLR 221 (305)
T ss_pred EECC
Confidence 7743
No 386
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=92.92 E-value=0.51 Score=47.79 Aligned_cols=73 Identities=25% Similarity=0.238 Sum_probs=51.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~ 168 (313)
.| ++|.|||.|..|-+.|..|++. |++|++..+... ...+..++.|+...-++
T Consensus 140 ~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~ 212 (467)
T TIGR01318 140 TG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC 212 (467)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence 68 9999999999999999999998 998877765421 12345667786432111
Q ss_pred -c---CCHHhhhccCCEEEEcccc
Q 021401 169 -L---GDIYETISGSDLVLLLISD 188 (313)
Q Consensus 169 -~---~~~~e~i~~ADvIiLavP~ 188 (313)
. ...++...+.|.||+++--
T Consensus 213 ~v~~~~~~~~~~~~~D~vilAtGa 236 (467)
T TIGR01318 213 EVGRDISLDDLLEDYDAVFLGVGT 236 (467)
T ss_pred EeCCccCHHHHHhcCCEEEEEeCC
Confidence 1 1334555689999998843
No 387
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=92.91 E-value=0.48 Score=45.97 Aligned_cols=70 Identities=14% Similarity=0.082 Sum_probs=50.4
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-c-H----HHHHHCCceecCCCcCCHHhhhccC
Q 021401 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-S-F----AEARAAGFTEENGTLGDIYETISGS 179 (313)
Q Consensus 107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s-~----~~A~~~G~~~~~~~~~~~~e~i~~A 179 (313)
.++| .+|++||- +++..|++..+... |+++.+...++.. . . +.+.+.|-+. ...+++++++++
T Consensus 150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~---~~~d~~~av~~a 219 (311)
T PRK14804 150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLS---WEMNLHKAVSHA 219 (311)
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeE---EEeCHHHHhCCC
Confidence 5889 99999996 68999999999888 9988777655421 1 1 2233344221 135889999999
Q ss_pred CEEEEcc
Q 021401 180 DLVLLLI 186 (313)
Q Consensus 180 DvIiLav 186 (313)
|+|..-+
T Consensus 220 Dvvy~d~ 226 (311)
T PRK14804 220 DYVYTDT 226 (311)
T ss_pred CEEEeee
Confidence 9999854
No 388
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.84 E-value=0.79 Score=43.76 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=61.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccc
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~ 188 (313)
+| .++.|+|.|.+|...++.++.. |.+|+...+. ++..+.+++.|...- ....++.-...|+++.+...
T Consensus 165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~-~~~~~~a~~~Ga~~v---i~~~~~~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRG-AAARRLALALGAASA---GGAYDTPPEPLDAAILFAPA 233 (329)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCC-hHHHHHHHHhCCcee---ccccccCcccceEEEECCCc
Confidence 47 8999999999999999988888 9886554444 455788888887431 11111112357888877665
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEec
Q 021401 189 AAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 189 ~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
. +.+++..+.++++-.++..+
T Consensus 234 ~---~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 234 G---GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred H---HHHHHHHHhhCCCcEEEEEe
Confidence 3 35666677788877766543
No 389
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.80 E-value=0.68 Score=45.70 Aligned_cols=89 Identities=10% Similarity=0.076 Sum_probs=54.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecC-------------------CcccHHHHHHC----
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-------------------GSRSFAEARAA---- 160 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~-------------------~~~s~~~A~~~---- 160 (313)
...|+. ++|.|||+|-+|..+++.|... |+ ++.+.++. ..+....+.+.
T Consensus 130 q~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 202 (376)
T PRK08762 130 QRRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN 202 (376)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC
Confidence 356888 9999999999999999999998 87 44444432 11111111111
Q ss_pred C-ce--ecCCCc--CCHHhhhccCCEEEEcccchhHHHHHHHHHh
Q 021401 161 G-FT--EENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (313)
Q Consensus 161 G-~~--~~~~~~--~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~ 200 (313)
. +. ...... .+.++.++++|+||.++-......++++...
T Consensus 203 p~v~v~~~~~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~ 247 (376)
T PRK08762 203 PDVQVEAVQERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACV 247 (376)
T ss_pred CCCEEEEEeccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence 1 11 000011 1234678899999998876655556666543
No 390
>PRK07806 short chain dehydrogenase; Provisional
Probab=92.74 E-value=1.1 Score=40.20 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=31.2
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021401 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (313)
Q Consensus 107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (313)
.++| +++-|.|. |-+|.++++.|.+. |++|++..|+.
T Consensus 3 ~~~~-k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPG-KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQK 40 (248)
T ss_pred CCCC-cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 4678 99999995 89999999999988 99887766653
No 391
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.70 E-value=1 Score=39.81 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=24.3
Q ss_pred EEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEEec
Q 021401 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLR 148 (313)
Q Consensus 113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~r 148 (313)
+|.|||+|-+|..+++.|... |+. +.+.++
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 589999999999999999888 773 444443
No 392
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=92.58 E-value=0.98 Score=44.41 Aligned_cols=71 Identities=13% Similarity=0.038 Sum_probs=48.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccHHH----HHHCCceecCCCcCCHHhhhc
Q 021401 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE----ARAAGFTEENGTLGDIYETIS 177 (313)
Q Consensus 107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~----A~~~G~~~~~~~~~~~~e~i~ 177 (313)
.|+| .+|++||- .++..|++..+... |++|.+...+.- ...+. +...|...+ ...+++|+++
T Consensus 151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~ 221 (338)
T PRK02255 151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVL--VTDDVDEAVK 221 (338)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEE--EEcCHHHHhC
Confidence 5889 99999996 57888888888888 998776654421 12222 223453210 1458899999
Q ss_pred cCCEEEEcc
Q 021401 178 GSDLVLLLI 186 (313)
Q Consensus 178 ~ADvIiLav 186 (313)
++|+|..-+
T Consensus 222 ~aDvvy~~~ 230 (338)
T PRK02255 222 DADFVYTDV 230 (338)
T ss_pred CCCEEEEcc
Confidence 999999843
No 393
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=92.54 E-value=1 Score=45.15 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHhc
Q 021401 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (313)
Q Consensus 112 kkIgIIG~-G~mG~AlA~~Lr~~ 133 (313)
-||+|||. |.+|.++|-.|...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 79999999 99999999998766
No 394
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=92.47 E-value=0.26 Score=48.24 Aligned_cols=88 Identities=15% Similarity=0.174 Sum_probs=54.6
Q ss_pred EEEEEc-ccchHHHHHHHHHhchhhhcCCcE---EEEEecCCcccHHHHHHCC--ceecCCCcCCHHhhhccCCEEEEcc
Q 021401 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 113 kIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~---Vivg~r~~~~s~~~A~~~G--~~~~~~~~~~~~e~i~~ADvIiLav 186 (313)
+|+||| .|..|..+.+.|.+. ++. +.+..+..+...... ..| .... ..+. +.++++|+|++++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~-~~~~~~~~~---~~~~-~~~~~~D~v~~a~ 69 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT-FKGKELEVN---EAKI-ESFEGIDIALFSA 69 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee-eCCeeEEEE---eCCh-HHhcCCCEEEECC
Confidence 589999 899999999999886 553 222222211111111 112 1110 0122 3458999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecCc
Q 021401 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLid~~Gv 214 (313)
|.....++..++.+ .|..|+|.++.
T Consensus 70 g~~~s~~~a~~~~~---~G~~VID~ss~ 94 (339)
T TIGR01296 70 GGSVSKEFAPKAAK---CGAIVIDNTSA 94 (339)
T ss_pred CHHHHHHHHHHHHH---CCCEEEECCHH
Confidence 99877777766543 57888888763
No 395
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.45 E-value=0.28 Score=46.43 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=46.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhhccCCEEEEccc
Q 021401 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLVLLLIS 187 (313)
Q Consensus 112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~---~~~~e~i~~ADvIiLavP 187 (313)
|+|.|+| .|.+|..+++.|.+. |++|++..|+.++. ......|+....+.. .++.++++++|+|+-+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 699999999999999 99987777753321 111223432111112 235677899999988654
No 396
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=92.43 E-value=0.7 Score=44.30 Aligned_cols=99 Identities=16% Similarity=0.170 Sum_probs=49.4
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-----C----ceecCCCcCCHHhhhccCCEE
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----G----FTEENGTLGDIYETISGSDLV 182 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-----G----~~~~~~~~~~~~e~i~~ADvI 182 (313)
++|+|||.|.+--+.....+.. +.+. .+.+.|.++...+.+++. | ..-......+...-+.+.|+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~----~~~~-~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQH----GPGA-RVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--H----TT---EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHh----CCCC-eEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEE
Confidence 5999999999987776666554 1133 345667766555544321 1 110000011222235789999
Q ss_pred EEcccch----hHHHHHHHHHhcCCCCcEEE--EecCch
Q 021401 183 LLLISDA----AQADNYEKIFSCMKPNSILG--LSHGFL 215 (313)
Q Consensus 183 iLavP~~----a~~~vi~ei~~~mk~gaiLi--d~~Gv~ 215 (313)
+++.-.. .-.++++.+.++|++|++|+ -.+|..
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR 235 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLR 235 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGG
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhH
Confidence 9988766 44569999999999999887 456653
No 397
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=92.43 E-value=0.47 Score=46.53 Aligned_cols=71 Identities=17% Similarity=0.106 Sum_probs=49.4
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccH----HHHHHCCceecCCCcCCHHhhh
Q 021401 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSF----AEARAAGFTEENGTLGDIYETI 176 (313)
Q Consensus 107 ~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~----~~A~~~G~~~~~~~~~~~~e~i 176 (313)
.|+| .+|++||-+ ++..|++..+... |+++.+...+.- ... +.+.+.|...+ ...++++++
T Consensus 153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK01713 153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARIT--VTDDIDKAV 223 (334)
T ss_pred CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 5788 999999986 6788888888888 998776654321 111 22344563211 146899999
Q ss_pred ccCCEEEEcc
Q 021401 177 SGSDLVLLLI 186 (313)
Q Consensus 177 ~~ADvIiLav 186 (313)
++||+|..-+
T Consensus 224 ~~aDvVyt~~ 233 (334)
T PRK01713 224 KGVDFVHTDV 233 (334)
T ss_pred CCCCEEEEcc
Confidence 9999999843
No 398
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.21 E-value=0.56 Score=46.71 Aligned_cols=70 Identities=14% Similarity=0.172 Sum_probs=44.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
++.+ ++|.|||+|-.|.+.++.|++. |++|...+...........+.|+....+ ....+.++..|+||..
T Consensus 3 ~~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~l~~g~~~~~~--~~~~~~~~~~d~vv~s 72 (438)
T PRK03806 3 DYQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDKLPENVERHTG--SLNDEWLLAADLIVAS 72 (438)
T ss_pred ccCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHHHhcCCEEEeC--CCCHHHhcCCCEEEEC
Confidence 4567 9999999999999999999998 9987655533222111122336542111 1223456788987764
No 399
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.09 E-value=0.76 Score=45.22 Aligned_cols=88 Identities=11% Similarity=0.115 Sum_probs=53.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCC-------------------cccHHHHH---H--
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEAR---A-- 159 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~---~-- 159 (313)
...|+. .+|.|||+|-+|..++++|... |+ ++.+.++.. .+....++ +
T Consensus 23 q~~L~~-~~VlivG~GGlGs~~a~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n 95 (355)
T PRK05597 23 QQSLFD-AKVAVIGAGGLGSPALLYLAGA------GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN 95 (355)
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence 467888 9999999999999999999888 77 333333211 01111111 1
Q ss_pred CCceec--CCCc--CCHHhhhccCCEEEEcccchhHHHHHHHHH
Q 021401 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (313)
Q Consensus 160 ~G~~~~--~~~~--~~~~e~i~~ADvIiLavP~~a~~~vi~ei~ 199 (313)
..+..+ .... .+..+.++++|+|+.++-.-....++++..
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c 139 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWAA 139 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111100 0011 123568899999999987665555666543
No 400
>PRK08374 homoserine dehydrogenase; Provisional
Probab=92.08 E-value=1.2 Score=43.53 Aligned_cols=88 Identities=15% Similarity=0.136 Sum_probs=47.8
Q ss_pred CEEEEEcccchHHHHHHHHHhchhh--hcCC--cEEEEE-ecCCc----c--cH----HHHHHCCceec-----CCCcCC
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAE--AKSD--IVVKVG-LRKGS----R--SF----AEARAAGFTEE-----NGTLGD 171 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~--~~~G--~~Vivg-~r~~~----~--s~----~~A~~~G~~~~-----~~~~~~ 171 (313)
.+|+|+|+|++|..+++.|.+.-+. ...| ++|+.. +++.. + .. +...+.|-... .....+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 6899999999999999998773110 0114 444322 22110 0 01 11111121100 000125
Q ss_pred HHhhh--ccCCEEEEcccchhHHHHHHHHH
Q 021401 172 IYETI--SGSDLVLLLISDAAQADNYEKIF 199 (313)
Q Consensus 172 ~~e~i--~~ADvIiLavP~~a~~~vi~ei~ 199 (313)
.+|++ .++|+||=++++....+++.+.+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~al 112 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEAL 112 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHHH
Confidence 66777 58999999998776666665544
No 401
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=92.07 E-value=0.46 Score=51.47 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=45.7
Q ss_pred CEEEEEcccchHHHH-HHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 112 kkIgIIG~G~mG~Al-A~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
++|.|||+|-.|.+. |+.|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS 70 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence 569999999999997 9999999 99986655443333333445676532 22234667889999874
No 402
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=92.02 E-value=0.58 Score=45.88 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=50.4
Q ss_pred cccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccHH----HHHHCCceecCCCcCCHHhh
Q 021401 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFA----EARAAGFTEENGTLGDIYET 175 (313)
Q Consensus 106 ~~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~----~A~~~G~~~~~~~~~~~~e~ 175 (313)
..|+| .||++||-+ ++..|++..+... |+++.+...+.- ...+ .+++.|...+ ...+++++
T Consensus 151 g~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea 221 (331)
T PRK02102 151 GPLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKIT--ITEDPEEA 221 (331)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEE--EEcCHHHH
Confidence 45888 999999987 7889999988888 998766654321 1111 2334553210 14588999
Q ss_pred hccCCEEEEcc
Q 021401 176 ISGSDLVLLLI 186 (313)
Q Consensus 176 i~~ADvIiLav 186 (313)
+++||+|..-+
T Consensus 222 ~~~aDvvyt~~ 232 (331)
T PRK02102 222 VKGADVIYTDV 232 (331)
T ss_pred hCCCCEEEEcC
Confidence 99999999854
No 403
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.99 E-value=0.51 Score=47.18 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=43.3
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc-cHHHHHH--CCceecCCCcCCHHhhhccCCEEEEc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~--~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
-+|.|||+|-.|.++|+.|++. |++|.+.+..... ..+..++ .|+....+ ....+.+.++|+||..
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~d~vV~s 75 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELRCG--GFDCELLVQASEIIIS 75 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEEeC--CCChHHhcCCCEEEEC
Confidence 5899999999999999999999 9987665544322 2222222 26543110 1224567789998884
No 404
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=91.88 E-value=0.68 Score=45.27 Aligned_cols=95 Identities=18% Similarity=0.134 Sum_probs=52.7
Q ss_pred EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecC-CcccHHHHHHCCcee---------cC------CC---cC---
Q 021401 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTE---------EN------GT---LG--- 170 (313)
Q Consensus 113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~---------~~------~~---~~--- 170 (313)
+|||+|+|.||..+.+.|.+. +.+.+++|.-.++. +.+......+++-+. ++ +. +.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~--~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYES--GERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhc--CCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence 589999999999999998764 00113565443432 223333443333110 00 00 01
Q ss_pred CHHhh-h--ccCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 171 DIYET-I--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 171 ~~~e~-i--~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
+++++ . .+.|+|+.|++.....+..... ++.|+.+++.+
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~---l~aGa~~V~~S 120 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGERH---IRAGAKRVLFS 120 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHHH---HHcCCeEEEec
Confidence 22221 1 4899999999988776655543 34566655544
No 405
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=91.87 E-value=0.4 Score=49.59 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=50.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC--------------------cccHHHHHHCCceecC
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEEN 166 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~--------------------~~s~~~A~~~G~~~~~ 166 (313)
.-.| ++|.|||.|.+|-+.|..|++. |++|++..+.. ....+.+++.|+...-
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4578 9999999999999999999999 99887765321 1223456777864211
Q ss_pred CC-c---CCHHhhhccCCEEEEcccc
Q 021401 167 GT-L---GDIYETISGSDLVLLLISD 188 (313)
Q Consensus 167 ~~-~---~~~~e~i~~ADvIiLavP~ 188 (313)
++ . .+.++.-.+.|+|++++-.
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~ 232 (564)
T PRK12771 207 GVRVGEDITLEQLEGEFDAVFVAIGA 232 (564)
T ss_pred CCEECCcCCHHHHHhhCCEEEEeeCC
Confidence 11 1 1233444568999998853
No 406
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.82 E-value=0.7 Score=43.03 Aligned_cols=88 Identities=15% Similarity=0.226 Sum_probs=53.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecC------------------C-cccHH---HHHHC-
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK------------------G-SRSFA---EARAA- 160 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~------------------~-~~s~~---~A~~~- 160 (313)
..-|++ .+|.|||+|-+|..+++.|... |. ++.+.++. + .+... ...+.
T Consensus 19 q~~L~~-~~VlvvG~GglGs~va~~La~~------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~in 91 (240)
T TIGR02355 19 QEALKA-SRVLIVGLGGLGCAASQYLAAA------GVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQIN 91 (240)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHC
Confidence 467888 9999999999999999999988 76 33333221 0 01110 11111
Q ss_pred -Cce--ecCCCc--CCHHhhhccCCEEEEcccchhHHHHHHHHH
Q 021401 161 -GFT--EENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (313)
Q Consensus 161 -G~~--~~~~~~--~~~~e~i~~ADvIiLavP~~a~~~vi~ei~ 199 (313)
.+. ..+... .+..+.++++|+||.++-.......+++..
T Consensus 92 p~v~i~~~~~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~ 135 (240)
T TIGR02355 92 PHIAINPINAKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQC 135 (240)
T ss_pred CCcEEEEEeccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHH
Confidence 111 000011 134567899999999997766666777654
No 407
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=91.82 E-value=0.65 Score=45.10 Aligned_cols=67 Identities=9% Similarity=0.106 Sum_probs=46.8
Q ss_pred cccCCCCEEEEEcc---cchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCE
Q 021401 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (313)
Q Consensus 106 ~~l~GikkIgIIG~---G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADv 181 (313)
..++| .+|++||- +++..|++..+... |+ ++.+.-.++-...+ -....+.. ..+++++++++|+
T Consensus 153 g~l~g-~~va~vGD~~~~rv~~Sl~~~~a~~------g~~~v~~~~P~~~~p~~-~~~~~~~~----~~d~~ea~~~aDv 220 (310)
T PRK13814 153 PHWNK-LCVTIIGDIRHSRVANSLMDGLVTM------GVPEIRLVGPSSLLPDK-VGNDSIKK----FTELKPSLLNSDV 220 (310)
T ss_pred CCcCC-cEEEEECCCCCCcHHHHHHHHHHHc------CCCEEEEeCCcccCcCc-cccceEEE----EcCHHHHhCCCCE
Confidence 34788 99999997 69999999999998 98 77666543211000 00012332 4588999999999
Q ss_pred EEE
Q 021401 182 VLL 184 (313)
Q Consensus 182 IiL 184 (313)
|..
T Consensus 221 vy~ 223 (310)
T PRK13814 221 IVT 223 (310)
T ss_pred EEE
Confidence 987
No 408
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=91.80 E-value=0.55 Score=46.56 Aligned_cols=89 Identities=18% Similarity=0.166 Sum_probs=55.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecC--Cc-----------------ccHHHH---HH--
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK--GS-----------------RSFAEA---RA-- 159 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~--~~-----------------~s~~~A---~~-- 159 (313)
..-|.. .+|.|||+|-+|..+++.|... |+ ++.+.++. .. +....+ .+
T Consensus 36 q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 36 QERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 467888 9999999999999999999988 77 44444332 00 100000 01
Q ss_pred CCc--eecCCCc--CCHHhhhccCCEEEEcccchhHHHHHHHHHh
Q 021401 160 AGF--TEENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (313)
Q Consensus 160 ~G~--~~~~~~~--~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~ 200 (313)
..+ ....... .+..+.++++|+|+-|+-.-....+++++..
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~ 153 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAE 153 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence 111 1100111 2345688999999988887776667776543
No 409
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=91.77 E-value=1.5 Score=39.85 Aligned_cols=93 Identities=19% Similarity=0.205 Sum_probs=59.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEEecCCcccHHHHHHCCceecCCCcCCHHhh--hccCCEEEE
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLL 184 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~--i~~ADvIiL 184 (313)
-+| .+|.|.|.|.+|.+..+.++.. |.+ |+ ..+.+.+..+.+.+.|..+ ......++. -...|+|+-
T Consensus 96 ~~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi-~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~d~vl~ 165 (277)
T cd08255 96 RLG-ERVAVVGLGLVGLLAAQLAKAA------GAREVV-GVDPDAARRELAEALGPAD--PVAADTADEIGGRGADVVIE 165 (277)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCcEE-EECCCHHHHHHHHHcCCCc--cccccchhhhcCCCCCEEEE
Confidence 367 8999999999999999999998 887 54 4444444456777777221 011111111 135899988
Q ss_pred cccchhHHHHHHHHHhcCCCCcEEEEecC
Q 021401 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~gaiLid~~G 213 (313)
++.... .+.+....++++..+++.+.
T Consensus 166 ~~~~~~---~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 166 ASGSPS---ALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred ccCChH---HHHHHHHHhcCCcEEEEEec
Confidence 776433 45566667777776665543
No 410
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=91.74 E-value=0.31 Score=47.55 Aligned_cols=71 Identities=20% Similarity=0.125 Sum_probs=39.9
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC--Cc--eecC--CCcCCHHhhhccCCEEEEc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GF--TEEN--GTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~--~~~~--~~~~~~~e~i~~ADvIiLa 185 (313)
+||+|||.|.+|.++|..|... +.+-++++.+.......-.+.+. .. ...+ -......+.+++||+|++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence 5899999999999999999554 11224544444322222122111 10 0000 0010125678999999997
Q ss_pred c
Q 021401 186 I 186 (313)
Q Consensus 186 v 186 (313)
.
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 7
No 411
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=91.73 E-value=0.62 Score=45.28 Aligned_cols=85 Identities=19% Similarity=0.267 Sum_probs=57.8
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHHH----HHCC--ceecCCCcCCHHhhh
Q 021401 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAG--FTEENGTLGDIYETI 176 (313)
Q Consensus 108 l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A----~~~G--~~~~~~~~~~~~e~i 176 (313)
|+| +|++.||=| ||+.|+..+.... |+++.+...++ ++-.+.| .+.| +.. ..++++++
T Consensus 151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv 219 (310)
T COG0078 151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV 219 (310)
T ss_pred ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence 788 999999966 8999998888888 99988875542 2333333 3334 332 45889999
Q ss_pred ccCCEEEEcccchhH--HHHHHHHHhcCC
Q 021401 177 SGSDLVLLLISDAAQ--ADNYEKIFSCMK 203 (313)
Q Consensus 177 ~~ADvIiLavP~~a~--~~vi~ei~~~mk 203 (313)
++||+|.-=+..+.- .+..++....++
T Consensus 220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~ 248 (310)
T COG0078 220 KGADVVYTDVWVSMGEEAEAEERRIAFLP 248 (310)
T ss_pred CCCCEEEecCcccCcchhhhHHHHHhhCC
Confidence 999999987765542 223444444444
No 412
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=91.71 E-value=1.3 Score=45.08 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=49.0
Q ss_pred cCCCCEEEEEcc---cchHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhhccCC
Q 021401 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSD 180 (313)
Q Consensus 108 l~GikkIgIIG~---G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~~~~~~~~~e~i~~AD 180 (313)
|+| +||++||- +++..|++..+...+ |+++.+...++- ...+.+.+.|...+ ...+++|++++||
T Consensus 239 l~G-~kIa~vGD~~~~rv~~Sl~~~la~~~-----G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~eav~~AD 310 (429)
T PRK11891 239 VDG-AHIALVGDLKYGRTVHSLVKLLALYR-----GLKFTLVSPPTLEMPAYIVEQISRNGHVIE--QTDDLAAGLRGAD 310 (429)
T ss_pred cCC-CEEEEECcCCCChHHHHHHHHHHHhc-----CCEEEEECCCccccCHHHHHHHHhcCCeEE--EEcCHHHHhCCCC
Confidence 789 99999998 488999999876531 888766654332 22344444453211 1458899999999
Q ss_pred EEEEcc
Q 021401 181 LVLLLI 186 (313)
Q Consensus 181 vIiLav 186 (313)
+|....
T Consensus 311 VVYt~~ 316 (429)
T PRK11891 311 VVYATR 316 (429)
T ss_pred EEEEcC
Confidence 999844
No 413
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=91.70 E-value=0.44 Score=46.39 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=19.9
Q ss_pred EEEEEcccchHHHHHHHHHhc
Q 021401 113 QIGVIGWGSQGPAQAQNLRDS 133 (313)
Q Consensus 113 kIgIIG~G~mG~AlA~~Lr~~ 133 (313)
+|.|||+|-+|..+|++|..+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 588999999999999999998
No 414
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=91.63 E-value=0.77 Score=45.11 Aligned_cols=71 Identities=20% Similarity=0.202 Sum_probs=50.1
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHhchhhhcCCcEEEEEecCCc----ccH----HHHHHCCceecCCCcCCHHhhh
Q 021401 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSF----AEARAAGFTEENGTLGDIYETI 176 (313)
Q Consensus 107 ~l~GikkIgIIG~G--~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~----~~A~~~G~~~~~~~~~~~~e~i 176 (313)
.++| .+|++||-+ ++..|+...+... |+++.+...+.- +.. +.+++.|...+ ...++++++
T Consensus 153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~--~~~d~~ea~ 223 (336)
T PRK03515 153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNIT--LTEDIAEGV 223 (336)
T ss_pred CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 5788 999999976 6899999999888 998776654321 111 23344563211 146899999
Q ss_pred ccCCEEEEcc
Q 021401 177 SGSDLVLLLI 186 (313)
Q Consensus 177 ~~ADvIiLav 186 (313)
+++|+|..-+
T Consensus 224 ~~aDvvytd~ 233 (336)
T PRK03515 224 KGADFIYTDV 233 (336)
T ss_pred CCCCEEEecC
Confidence 9999999863
No 415
>PRK06392 homoserine dehydrogenase; Provisional
Probab=91.56 E-value=0.73 Score=45.05 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.9
Q ss_pred CEEEEEcccchHHHHHHHHHhc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDS 133 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~ 133 (313)
++|+|||+|++|+.+++.|++.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~ 22 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSR 22 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 4899999999999999998773
No 416
>PLN02342 ornithine carbamoyltransferase
Probab=91.56 E-value=0.73 Score=45.54 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=50.3
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHHHHHCCc--eecCCCcCCHHhhhcc
Q 021401 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGF--TEENGTLGDIYETISG 178 (313)
Q Consensus 106 ~~l~GikkIgIIG~G-~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~--~~~~~~~~~~~e~i~~ 178 (313)
..|+| .||++||-+ ++..|++..+... |+++.+...+. .+..+.+++.|. +. ...++++++++
T Consensus 190 G~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~---~~~d~~eav~~ 259 (348)
T PLN02342 190 GRLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIE---ITNDPAEAVKG 259 (348)
T ss_pred CCcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEE---EEcCHHHHhCC
Confidence 45889 999999964 6888888888888 99877665432 122334444442 11 14588999999
Q ss_pred CCEEEEcc
Q 021401 179 SDLVLLLI 186 (313)
Q Consensus 179 ADvIiLav 186 (313)
||+|..-+
T Consensus 260 aDVvy~~~ 267 (348)
T PLN02342 260 ADVVYTDV 267 (348)
T ss_pred CCEEEECC
Confidence 99999874
No 417
>PRK01581 speE spermidine synthase; Validated
Probab=91.54 E-value=1 Score=44.97 Aligned_cols=133 Identities=14% Similarity=0.182 Sum_probs=74.9
Q ss_pred cccccchhhh-hhcccccchhhhhhcCCCcccc-------------cccccCCCCEEEEEcccchHHHHHHHHHhchhhh
Q 021401 72 LDFETSVFKK-DAISLANRDEFIVRGGRDLFKL-------------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEA 137 (313)
Q Consensus 72 ~~f~~~~~~~-~~~~~~~~~e~~v~~G~w~f~~-------------~~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~ 137 (313)
+|-.++.|+. +.+...+|. .+-.|.|+++- ++......++|.|||.|. |..+...++..
T Consensus 100 l~~~~S~yQ~I~I~et~~~~--L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGd-G~tlrelLk~~---- 172 (374)
T PRK01581 100 LFAEKSNYQNINLLQVSDIR--LYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGD-GLALREVLKYE---- 172 (374)
T ss_pred EEecCCCCceEEEEEcCCEE--EEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCH-HHHHHHHHhcC----
Confidence 4555555654 222333442 36677776641 233344449999999983 55555555443
Q ss_pred cCCcEEEEEecCCcccHHHHHHC---------CceecCC--CcCCHHhhh----ccCCEEEEcccchhH--------HHH
Q 021401 138 KSDIVVKVGLRKGSRSFAEARAA---------GFTEENG--TLGDIYETI----SGSDLVLLLISDAAQ--------ADN 194 (313)
Q Consensus 138 ~~G~~Vivg~r~~~~s~~~A~~~---------G~~~~~~--~~~~~~e~i----~~ADvIiLavP~~a~--------~~v 194 (313)
+...+...+.++...+.|++. .+.+..- ...|..+.+ ..-|+||+-+|+... .++
T Consensus 173 --~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EF 250 (374)
T PRK01581 173 --TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSEL 250 (374)
T ss_pred --CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEEEEcCCCccccchhhhhHHHH
Confidence 443456666777777777752 1100000 012333333 346999999875421 347
Q ss_pred HHHHHhcCCCCcEEEEecC
Q 021401 195 YEKIFSCMKPNSILGLSHG 213 (313)
Q Consensus 195 i~ei~~~mk~gaiLid~~G 213 (313)
++.+...|+||-+++.-++
T Consensus 251 y~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 251 FARIATFLTEDGAFVCQSN 269 (374)
T ss_pred HHHHHHhcCCCcEEEEecC
Confidence 7788899999998764443
No 418
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=91.53 E-value=0.71 Score=46.38 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=49.0
Q ss_pred ccCCCCEEEEEcc-----c---chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCcC
Q 021401 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (313)
Q Consensus 107 ~l~GikkIgIIG~-----G---~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~ 170 (313)
.++| +||+|+|- | ++..|++..+... |+++.+...++ ++..+. +.+.|...+ ...
T Consensus 184 ~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~--~~~ 254 (395)
T PRK07200 184 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFR--QVN 254 (395)
T ss_pred ccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 3777 89999986 4 5678988888888 99887776542 121222 344553210 146
Q ss_pred CHHhhhccCCEEEEcc
Q 021401 171 DIYETISGSDLVLLLI 186 (313)
Q Consensus 171 ~~~e~i~~ADvIiLav 186 (313)
+++|++++||+|..-+
T Consensus 255 d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 255 SMEEAFKDADIVYPKS 270 (395)
T ss_pred CHHHHhCCCCEEEEcC
Confidence 8999999999999874
No 419
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=91.45 E-value=1.8 Score=42.75 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=64.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc-CCHHhh----h--ccCC
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYET----I--SGSD 180 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~-~~~~e~----i--~~AD 180 (313)
-.| .++.|.|.|.+|...++.++.. |.++++..+.+++..+.+++.|+..-+... .+..+. . ...|
T Consensus 184 ~~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~D 256 (393)
T TIGR02819 184 GPG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVD 256 (393)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCc
Confidence 357 8999999999999999999998 987666555555667788888873211000 122222 2 2479
Q ss_pred EEEEcccchhH-----------HHHHHHHHhcCCCCcEEEEec
Q 021401 181 LVLLLISDAAQ-----------ADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 181 vIiLavP~~a~-----------~~vi~ei~~~mk~gaiLid~~ 212 (313)
+|+-++-.... ...+++..+.++++-.++.++
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 257 CAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 99988875321 235666667777776665443
No 420
>PLN02477 glutamate dehydrogenase
Probab=91.36 E-value=0.38 Score=48.54 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=31.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r 148 (313)
.+|+| ++|+|.|+|++|...|+.|.+. |.+|+...+
T Consensus 202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVVaVsD 237 (410)
T PLN02477 202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIVAVSD 237 (410)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEC
Confidence 47999 9999999999999999999998 988763333
No 421
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=91.32 E-value=0.84 Score=42.29 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=57.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhhc---cCC
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETIS---GSD 180 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~e~i~---~AD 180 (313)
..| ++|.-||+|. | .++..+.+. |...+++.+.++...+.|++. ++.+ ..++.. ..|
T Consensus 118 ~~~-~~VLDiGcGs-G-~l~i~~~~~------g~~~v~giDis~~~l~~A~~n~~~~~~~~-------~~~~~~~~~~fD 181 (250)
T PRK00517 118 LPG-KTVLDVGCGS-G-ILAIAAAKL------GAKKVLAVDIDPQAVEAARENAELNGVEL-------NVYLPQGDLKAD 181 (250)
T ss_pred CCC-CEEEEeCCcH-H-HHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCc-------eEEEccCCCCcC
Confidence 467 9999999998 5 455556665 654457778776665555432 3311 001111 579
Q ss_pred EEEEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021401 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~ 211 (313)
+|+..........+++++...||||..++.+
T Consensus 182 ~Vvani~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 182 VIVANILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9887665555667888999999999887754
No 422
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=91.29 E-value=1.3 Score=43.97 Aligned_cols=130 Identities=16% Similarity=0.190 Sum_probs=81.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCH---------Hhhhc
Q 021401 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---------YETIS 177 (313)
Q Consensus 107 ~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~---------~e~i~ 177 (313)
-=.| .+++|+|+|-+|-+..++++.. |-..+++.+.++...+.|++.|.++- ..+. .++-.
T Consensus 183 v~~G-~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~~---vn~~~~~~vv~~i~~~T~ 252 (366)
T COG1062 183 VEPG-DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATHF---VNPKEVDDVVEAIVELTD 252 (366)
T ss_pred CCCC-CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCcee---ecchhhhhHHHHHHHhcC
Confidence 3457 8999999999999999999998 88778899998888999999998751 2221 12333
Q ss_pred -cCCEEEEcccchhHHHHHHHHHhcC-CCCcEEE-EecCc--hhhhhhhcccCCCCCccEE-----EeccCCCchhHHHH
Q 021401 178 -GSDLVLLLISDAAQADNYEKIFSCM-KPNSILG-LSHGF--LLGHLQSIGLDFPKNIGVI-----AVCPKGMGPSVRRL 247 (313)
Q Consensus 178 -~ADvIiLavP~~a~~~vi~ei~~~m-k~gaiLi-d~~Gv--~l~~~~~~~~~l~~~i~vV-----~vhPn~pg~~~r~l 247 (313)
.+|..|-++-... +++.-+... +-|..++ =+.+. .+. +....+. ....+. ..-|..--+.+-++
T Consensus 253 gG~d~~~e~~G~~~---~~~~al~~~~~~G~~v~iGv~~~~~~i~-~~~~~lv--~gr~~~Gs~~G~~~p~~diP~lv~~ 326 (366)
T COG1062 253 GGADYAFECVGNVE---VMRQALEATHRGGTSVIIGVAGAGQEIS-TRPFQLV--TGRVWKGSAFGGARPRSDIPRLVDL 326 (366)
T ss_pred CCCCEEEEccCCHH---HHHHHHHHHhcCCeEEEEecCCCCceee-cChHHee--ccceEEEEeecCCccccchhHHHHH
Confidence 7899998887655 444222222 3465544 23322 110 1110011 111222 25666666677889
Q ss_pred HHhcc
Q 021401 248 YVQGK 252 (313)
Q Consensus 248 f~~G~ 252 (313)
|.+||
T Consensus 327 y~~Gk 331 (366)
T COG1062 327 YMAGK 331 (366)
T ss_pred HHcCC
Confidence 99885
No 423
>PRK10637 cysG siroheme synthase; Provisional
Probab=91.28 E-value=1.2 Score=45.20 Aligned_cols=82 Identities=18% Similarity=0.138 Sum_probs=54.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc-eecCCCcCCHHhhhccCCEEE
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-TEENGTLGDIYETISGSDLVL 183 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~-~~~~~~~~~~~e~i~~ADvIi 183 (313)
.-+|.| +++.|||-|.++..=++.|.+. |.+|.+....-.+......+.|- .-..... . ++-++++|+|+
T Consensus 7 ~~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~~-~-~~dl~~~~lv~ 77 (457)
T PRK10637 7 FCQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGPF-D-ESLLDTCWLAI 77 (457)
T ss_pred EEEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC-C-hHHhCCCEEEE
Confidence 468999 9999999999999989999888 88776654321222222223332 1111111 2 34578999999
Q ss_pred EcccchhHHHHH
Q 021401 184 LLISDAAQADNY 195 (313)
Q Consensus 184 LavP~~a~~~vi 195 (313)
.|+.+....+-+
T Consensus 78 ~at~d~~~n~~i 89 (457)
T PRK10637 78 AATDDDAVNQRV 89 (457)
T ss_pred ECCCCHHHhHHH
Confidence 999998776533
No 424
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=91.27 E-value=0.51 Score=46.98 Aligned_cols=90 Identities=18% Similarity=0.268 Sum_probs=52.5
Q ss_pred CEEEEEcc-cchHHHHHHHHH-hchhhhcCCcE---EEEEecCCcccHHHHHHCCceecCCCcCCH-H-hhhccCCEEEE
Q 021401 112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLL 184 (313)
Q Consensus 112 kkIgIIG~-G~mG~AlA~~Lr-~~~~~~~~G~~---Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~-e~i~~ADvIiL 184 (313)
++|||||+ |.+|+.+.+.|. +. ++. ++......+ .... ..+..+.....+. + +.+++.|+++.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~------~fp~~~~~~~ss~~s--~g~~--~~f~~~~~~v~~~~~~~~~~~vDivff 70 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER------DFDAIRPVFFSTSQL--GQAA--PSFGGTTGTLQDAFDIDALKALDIIIT 70 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC------CCccccEEEEEchhh--CCCc--CCCCCCcceEEcCcccccccCCCEEEE
Confidence 58999995 999999999888 44 432 222222111 0000 1110000011122 2 35789999999
Q ss_pred cccchhHHHHHHHHHhcCCCC--cEEEEecCc
Q 021401 185 LISDAAQADNYEKIFSCMKPN--SILGLSHGF 214 (313)
Q Consensus 185 avP~~a~~~vi~ei~~~mk~g--aiLid~~Gv 214 (313)
+.+.....++..+.. +.| ++|+|.++.
T Consensus 71 a~g~~~s~~~~p~~~---~aG~~~~VIDnSSa 99 (366)
T TIGR01745 71 CQGGDYTNEIYPKLR---ESGWQGYWIDAASS 99 (366)
T ss_pred cCCHHHHHHHHHHHH---hCCCCeEEEECChh
Confidence 998775555665544 358 789988764
No 425
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=91.20 E-value=0.61 Score=46.30 Aligned_cols=65 Identities=26% Similarity=0.287 Sum_probs=43.0
Q ss_pred EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHH----HHH-HCCceecCCCcCCHHhhhccCCEEEEcc
Q 021401 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (313)
Q Consensus 113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~----~A~-~~G~~~~~~~~~~~~e~i~~ADvIiLav 186 (313)
+|.|||+|-.|.++|+.|++. |++|.+.+........ ..+ ..|+... .....+.++++|+||..-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~---~g~~~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLH---TGLHLEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEE---ecCchHHhccCCEEEECC
Confidence 478999999999999999999 9987666544322111 112 2466431 112245678899988843
No 426
>PRK08223 hypothetical protein; Validated
Probab=91.20 E-value=1.3 Score=42.63 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=26.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhc
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~ 133 (313)
..-|+. .+|.|||+|-+|..+++.|...
T Consensus 22 Q~kL~~-s~VlIvG~GGLGs~va~~LA~a 49 (287)
T PRK08223 22 QQRLRN-SRVAIAGLGGVGGIHLLTLARL 49 (287)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHh
Confidence 567888 9999999999999999999998
No 427
>PRK14031 glutamate dehydrogenase; Provisional
Probab=91.10 E-value=0.92 Score=46.30 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=31.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEec
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r 148 (313)
.+|+| +++.|.|+|++|...|+.|.+. |.+|+...+
T Consensus 224 ~~l~g-~rVaVQGfGNVG~~aA~~L~e~------GAkVVaVSD 259 (444)
T PRK14031 224 TDLKG-KVCLVSGSGNVAQYTAEKVLEL------GGKVVTMSD 259 (444)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 47999 9999999999999999999999 998766444
No 428
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.89 E-value=0.95 Score=47.79 Aligned_cols=72 Identities=22% Similarity=0.202 Sum_probs=50.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~ 168 (313)
.| ++|+|||.|..|.+.|..|++. |++|++..+... ...+...+.|+...-++
T Consensus 326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 398 (654)
T PRK12769 326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNC 398 (654)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCC
Confidence 58 9999999999999999999999 999887765421 01344556675321111
Q ss_pred ----cCCHHhhhccCCEEEEccc
Q 021401 169 ----LGDIYETISGSDLVLLLIS 187 (313)
Q Consensus 169 ----~~~~~e~i~~ADvIiLavP 187 (313)
..+.+++..+.|.|++++-
T Consensus 399 ~v~~~i~~~~~~~~~DavilAtG 421 (654)
T PRK12769 399 EVGKDISLESLLEDYDAVFVGVG 421 (654)
T ss_pred EeCCcCCHHHHHhcCCEEEEeCC
Confidence 1144555678999999873
No 429
>PRK08265 short chain dehydrogenase; Provisional
Probab=90.88 E-value=1.3 Score=40.49 Aligned_cols=38 Identities=21% Similarity=0.074 Sum_probs=32.2
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021401 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (313)
Q Consensus 106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (313)
..++| +++-|.|. |-+|.++++.|.+. |.+|++..|+.
T Consensus 2 ~~~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 40 (261)
T PRK08265 2 IGLAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDA 40 (261)
T ss_pred CCCCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 45788 99999995 89999999999998 99887776653
No 430
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=90.76 E-value=1.1 Score=44.73 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=25.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhc
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~ 133 (313)
..-|.. .+|.|||+|-+|..+|++|...
T Consensus 37 q~~L~~-~~VlviG~GGlGs~va~~La~~ 64 (392)
T PRK07878 37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA 64 (392)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHc
Confidence 356778 9999999999999999999988
No 431
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=90.74 E-value=2.1 Score=41.95 Aligned_cols=92 Identities=20% Similarity=0.199 Sum_probs=58.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCEEEEc
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~i~~ADvIiLa 185 (313)
.| .++.|.|.|.+|...++.++.. |.+|++..+.+++..+.+++.|...--. ..+ ..+.....|+|+=+
T Consensus 178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~-~~~~~~v~~~~~~~D~vid~ 249 (375)
T PLN02178 178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFLV-TTDSQKMKEAVGTMDFIIDT 249 (375)
T ss_pred CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEEc-CcCHHHHHHhhCCCcEEEEC
Confidence 58 9999999999999999999999 9887665544334355666777631000 011 12223457999988
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEe
Q 021401 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~mk~gaiLid~ 211 (313)
+.... .+++..+.++++-.++..
T Consensus 250 ~G~~~---~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 250 VSAEH---ALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred CCcHH---HHHHHHHhhcCCCEEEEE
Confidence 76432 344444556666655544
No 432
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=90.67 E-value=2 Score=41.44 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=58.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhhccCCEEEEcc
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~-~~~~~e~i~~ADvIiLav 186 (313)
+| .++.|+|.|.+|...++.++.. |.++++..+.+.+....+.+.|...- +.. ...+.+.....|+|+=++
T Consensus 180 ~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~ 252 (357)
T PLN02514 180 SG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV 252 (357)
T ss_pred CC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC
Confidence 68 8999999999999999999998 98876655544333333345675310 000 001122234579999888
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 187 P~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
.... .+++..+.++++..++..+
T Consensus 253 g~~~---~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 253 PVFH---PLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CchH---HHHHHHHHhccCCEEEEEC
Confidence 7432 3444555677777666544
No 433
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=90.64 E-value=2.5 Score=40.60 Aligned_cols=94 Identities=22% Similarity=0.286 Sum_probs=56.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHh----hh--ccCCE
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSDL 181 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e----~i--~~ADv 181 (313)
+| .+|.|+|.|.+|...++.++.. |.+.++..+.+++..+.+++.|...- +....+..+ .. ...|+
T Consensus 176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 57 8999999999999999999998 98533454444555677777775210 000112212 11 14688
Q ss_pred EEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
|+=++-.. +.+++....++++-.++.++
T Consensus 249 vid~~g~~---~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 249 VIDAVGRP---ETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred EEECCCCH---HHHHHHHHHhccCCEEEEEC
Confidence 88777632 23344445566666555443
No 434
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=90.59 E-value=4.4 Score=31.94 Aligned_cols=93 Identities=17% Similarity=0.206 Sum_probs=54.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHH----HCCceecCCCcCC----HHhhhccCC
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGD----IYETISGSD 180 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~----~~e~i~~AD 180 (313)
.+ ++|.-||+|. |.-....++.. .+.+ +++.+.++...+.++ ..+.....-...+ ........|
T Consensus 19 ~~-~~vldlG~G~-G~~~~~l~~~~-----~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 19 PG-DVLWDIGAGS-GSITIEAARLV-----PNGR-VYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CC-CEEEEeCCCC-CHHHHHHHHHC-----CCce-EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 36 8999999998 43333333333 0234 467776655444432 2222100000011 122335799
Q ss_pred EEEEcccchhHHHHHHHHHhcCCCCcEEE
Q 021401 181 LVLLLISDAAQADNYEKIFSCMKPNSILG 209 (313)
Q Consensus 181 vIiLavP~~a~~~vi~ei~~~mk~gaiLi 209 (313)
+|++..++....++++++...||||..++
T Consensus 91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li 119 (124)
T TIGR02469 91 RVFIGGSGGLLQEILEAIWRRLRPGGRIV 119 (124)
T ss_pred EEEECCcchhHHHHHHHHHHHcCCCCEEE
Confidence 99998877777789999999999988765
No 435
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.55 E-value=3.3 Score=36.66 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=31.8
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCc
Q 021401 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (313)
Q Consensus 107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (313)
.|+| ++|.|.|. |-+|..+++.|.+. |++|++..|+.+
T Consensus 2 ~~~~-~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~ 40 (238)
T PRK05786 2 RLKG-KKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNEN 40 (238)
T ss_pred CcCC-cEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 3678 99999995 78999999999998 999877776543
No 436
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=90.53 E-value=1.8 Score=39.13 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=30.9
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021401 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (313)
Q Consensus 107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (313)
.++| |++.|+| .|-+|.++|+.|.+. |.+|++..++.
T Consensus 4 ~l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~~ 41 (255)
T PRK06463 4 RFKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNSA 41 (255)
T ss_pred CcCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 4678 9999999 589999999999998 99887665544
No 437
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=90.50 E-value=3.7 Score=36.40 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=58.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhh-----hccCCE
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL 181 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~-----i~~ADv 181 (313)
.+| .+|.|.|.|.+|.++++.++.. |.+|+...+. +...+.+++.|...- +....+..+. -...|+
T Consensus 133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRS-DEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 467 8999999999999999999998 8877555443 344455555553210 0001122221 246899
Q ss_pred EEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
|+-++... ..++.....|+++..+++.+
T Consensus 205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGGP---ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCCH---HHHHHHHHhcccCCEEEEEc
Confidence 99887753 23445555666666665544
No 438
>PRK06153 hypothetical protein; Provisional
Probab=90.46 E-value=1.4 Score=44.28 Aligned_cols=87 Identities=11% Similarity=0.194 Sum_probs=53.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecC-------------------C---cccHHHH---HH
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK-------------------G---SRSFAEA---RA 159 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~-------------------~---~~s~~~A---~~ 159 (313)
.-|++ .+|+|||+|-.|..++..|.+. |. ++++.+.. + .+....+ .+
T Consensus 172 ~kL~~-~~VaIVG~GG~GS~Va~~LAR~------GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~ 244 (393)
T PRK06153 172 AKLEG-QRIAIIGLGGTGSYILDLVAKT------PVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSN 244 (393)
T ss_pred HHHhh-CcEEEEcCCccHHHHHHHHHHc------CCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHH
Confidence 57788 9999999999999999999998 77 33333211 0 0100011 11
Q ss_pred C--CceecCCCcC-CHHhhhccCCEEEEcccchhHHHHHHHHH
Q 021401 160 A--GFTEENGTLG-DIYETISGSDLVLLLISDAAQADNYEKIF 199 (313)
Q Consensus 160 ~--G~~~~~~~~~-~~~e~i~~ADvIiLavP~~a~~~vi~ei~ 199 (313)
. ++........ +..+.+.++|+||.|+-......++.+..
T Consensus 245 in~~I~~~~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a 287 (393)
T PRK06153 245 MRRGIVPHPEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYL 287 (393)
T ss_pred hCCeEEEEeecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 1 1221111111 22246789999999999888877777544
No 439
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.42 E-value=0.91 Score=44.72 Aligned_cols=123 Identities=19% Similarity=0.204 Sum_probs=65.7
Q ss_pred hhhhhhcccccchhhhhhcCCC--ccc----c---------------cc---cccCCCCEEEEEcccchHHHHHHHHHhc
Q 021401 78 VFKKDAISLANRDEFIVRGGRD--LFK----L---------------LP---DAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (313)
Q Consensus 78 ~~~~~~~~~~~~~e~~v~~G~w--~f~----~---------------~~---~~l~GikkIgIIG~G~mG~AlA~~Lr~~ 133 (313)
+.+..+++-.+|.++++-..++ ..+ + ++ .--+| +.+||+|+|-+|.=-.+..++.
T Consensus 126 ~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aAPlLCaGITvYspLk~~g~~pG-~~vgI~GlGGLGh~aVq~AKAM 204 (360)
T KOG0023|consen 126 VYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAAPLLCAGITVYSPLKRSGLGPG-KWVGIVGLGGLGHMAVQYAKAM 204 (360)
T ss_pred cccCCCCccCccceeEEEeeeeEEECCCCCChhhccchhhcceEEeehhHHcCCCCC-cEEEEecCcccchHHHHHHHHh
Confidence 3445667778888887665555 111 0 10 11178 9999999988776666777777
Q ss_pred hhhhcCCcEEEEEecCCcccHHHHHH-CC---ceecCCCcCCHHhhhccCCEEEEcccchhHHHHHHHHHhcCCCCcEEE
Q 021401 134 LAEAKSDIVVKVGLRKGSRSFAEARA-AG---FTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (313)
Q Consensus 134 ~~~~~~G~~Vivg~r~~~~s~~~A~~-~G---~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLi 209 (313)
|++|++..+.+.+ .+++.+ .| |++--.+..-.+++...-|.++-+++.- ...-++....+||++-.|+
T Consensus 205 ------G~rV~vis~~~~k-keea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~-a~~~~~~~~~~lk~~Gt~V 276 (360)
T KOG0023|consen 205 ------GMRVTVISTSSKK-KEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL-AEHALEPLLGLLKVNGTLV 276 (360)
T ss_pred ------CcEEEEEeCCchh-HHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec-cccchHHHHHHhhcCCEEE
Confidence 9998766555323 334433 44 2320000001223444456655555532 1223444555565554444
No 440
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=90.38 E-value=0.73 Score=41.97 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=47.0
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHH-CCceecCCCcCC----HHhhh-cc
Q 021401 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD----IYETI-SG 178 (313)
Q Consensus 106 ~~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~----~~e~i-~~ 178 (313)
....+ |+|.|+| .|.+|..+++.|.+. |++|+...|...+....... .++........+ +.+.+ .+
T Consensus 13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~ 85 (251)
T PLN00141 13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDD 85 (251)
T ss_pred ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcC
Confidence 45567 9999999 599999999999998 99887666653321111111 122110011222 33455 58
Q ss_pred CCEEEEcccc
Q 021401 179 SDLVLLLISD 188 (313)
Q Consensus 179 ADvIiLavP~ 188 (313)
.|+|+.+.+.
T Consensus 86 ~d~vi~~~g~ 95 (251)
T PLN00141 86 SDAVICATGF 95 (251)
T ss_pred CCEEEECCCC
Confidence 9999988654
No 441
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=90.31 E-value=2 Score=43.35 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=64.1
Q ss_pred cccCCCCEEEEEcc----------cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhh
Q 021401 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET 175 (313)
Q Consensus 106 ~~l~GikkIgIIG~----------G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~ 175 (313)
+.++| ++|+|.|+ .+-+-.++..|++. |.+|.+.+..-. .....+..+... . + ..+
T Consensus 310 ~~~~~-~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~------g~~V~~~DP~v~-~~~~~~~~~~~~----~-~-~~~ 375 (425)
T PRK15182 310 INVEG-SSVLILGFTFKENCPDIRNTRIIDVVKELGKY------SCKVDIFDPWVD-AEEVRREYGIIP----V-S-EVK 375 (425)
T ss_pred CCCCC-CEEEEEEeEeCCCCCccccCcHHHHHHHHHhC------CCEEEEECCCCC-hhHHHHhcCccc----c-h-hhh
Confidence 35789 99999998 56777888888888 998776643211 111112234321 0 1 234
Q ss_pred hccCCEEEEcccchhHHHH-HHHHHhcCCCCcEEEEecCch
Q 021401 176 ISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL 215 (313)
Q Consensus 176 i~~ADvIiLavP~~a~~~v-i~ei~~~mk~gaiLid~~Gv~ 215 (313)
+++||+|++++.-....++ ++++...|+...+|+|..++.
T Consensus 376 ~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~~ 416 (425)
T PRK15182 376 SSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYVL 416 (425)
T ss_pred hcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCCC
Confidence 7789999999998877653 556666677556888977664
No 442
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=90.30 E-value=1.9 Score=40.96 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=36.3
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (313)
+| .++.|.|.|.+|...++.++.. |.++++..+.+++..+.+++.|.
T Consensus 160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~Ga 206 (347)
T PRK10309 160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDINSEKLALAKSLGA 206 (347)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCC
Confidence 57 8999999999999999999998 98754555544455556666664
No 443
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=90.29 E-value=2.4 Score=40.04 Aligned_cols=93 Identities=20% Similarity=0.184 Sum_probs=56.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEEecCCcccHHHHHHCCceec-CCCcCCHH---hhhc--cCC
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY---ETIS--GSD 180 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~---e~i~--~AD 180 (313)
.+| .+|.|+|.|.+|...++.++.. |.+ |++ ...+++..+.+++.|...- +....+.+ +... ..|
T Consensus 162 ~~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~-~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 162 SGR-DTVLVVGAGPVGLGALMLARAL------GAEDVIG-VDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEE-ECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCC
Confidence 358 9999999999999999999998 987 654 4444455667777775210 00000111 2222 578
Q ss_pred EEEEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021401 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~ 211 (313)
+|+-++..... +++....++++..++..
T Consensus 234 ~vid~~g~~~~---~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 234 VAIECSGNTAA---RRLALEAVRPWGRLVLV 261 (339)
T ss_pred EEEECCCCHHH---HHHHHHHhhcCCEEEEE
Confidence 88888775432 33334455666555543
No 444
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=89.94 E-value=1.1 Score=44.48 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=48.6
Q ss_pred cccCCCCEEEEEccc--------chHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHH----HHHCCceecCCCc
Q 021401 106 DAFNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTL 169 (313)
Q Consensus 106 ~~l~GikkIgIIG~G--------~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~ 169 (313)
..|+| .||+|+|.| ++..|++..+... |+++.+...++ ++..+. +.+.|...+ ..
T Consensus 166 ~~l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~ 236 (357)
T TIGR03316 166 ENLKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFN--IV 236 (357)
T ss_pred cccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEE--EE
Confidence 34778 899999864 4457888888888 99887775542 122222 334553211 14
Q ss_pred CCHHhhhccCCEEEEcc
Q 021401 170 GDIYETISGSDLVLLLI 186 (313)
Q Consensus 170 ~~~~e~i~~ADvIiLav 186 (313)
.+++|+++++|+|..-.
T Consensus 237 ~d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 237 NSMDEAFKDADIVYPKS 253 (357)
T ss_pred cCHHHHhCCCCEEEECC
Confidence 68999999999999874
No 445
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=89.91 E-value=2.8 Score=40.09 Aligned_cols=161 Identities=16% Similarity=0.210 Sum_probs=92.5
Q ss_pred CCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH-----HHH---HHCCceecCCCcCCHHhhhccCCE
Q 021401 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-----AEA---RAAGFTEENGTLGDIYETISGSDL 181 (313)
Q Consensus 111 ikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-----~~A---~~~G~~~~~~~~~~~~e~i~~ADv 181 (313)
+++|+|+|+ |.||+.+.+.+... .++++.-+.++..... .+. ...|+.. ..+......++|+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV 72 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADV 72 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCE
Confidence 389999997 99999999999876 2466555554432211 011 1122321 2345677889999
Q ss_pred EEEcccchhHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCchh--HHH-HHHhcccccCCC
Q 021401 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS--VRR-LYVQGKEINGAG 258 (313)
Q Consensus 182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~--~r~-lf~~G~e~~g~G 258 (313)
+|==+-|....++++-...+= -.+|+=+.|++-..++... .+.+.+.+| ..||+.--. +-. +-...+-+.++.
T Consensus 73 ~IDFT~P~~~~~~l~~~~~~~--~~lVIGTTGf~~e~~~~l~-~~a~~v~vv-~a~NfSiGvnll~~l~~~aak~l~~~D 148 (266)
T COG0289 73 LIDFTTPEATLENLEFALEHG--KPLVIGTTGFTEEQLEKLR-EAAEKVPVV-IAPNFSLGVNLLFKLAEQAAKVLDDYD 148 (266)
T ss_pred EEECCCchhhHHHHHHHHHcC--CCeEEECCCCCHHHHHHHH-HHHhhCCEE-EeccchHHHHHHHHHHHHHHHhcCCCC
Confidence 999888888877777554432 2367778898643333211 122334443 557665433 111 111111112233
Q ss_pred ceEEEEecc-----CCCHHHHHHHHHHHHHcC
Q 021401 259 INSSFAVHQ-----DVDGRATNVALGWSVALG 285 (313)
Q Consensus 259 ~~~iitp~~-----d~~~ea~e~a~~L~~alG 285 (313)
+-. |--|. -.++.|+.+++.+.+..|
T Consensus 149 iEI-iE~HHr~K~DAPSGTAl~lae~ia~~~~ 179 (266)
T COG0289 149 IEI-IEAHHRHKKDAPSGTALKLAEAIAEARG 179 (266)
T ss_pred EEe-hhhhcccCCCCCcHHHHHHHHHHHHhhc
Confidence 332 33332 456889999999999999
No 446
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=89.89 E-value=1.1 Score=45.33 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=33.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (313)
.+|+| ++|+|=|+||.|.-.|+.|.+. |.+|+...+..
T Consensus 203 ~~l~G-~rVaVQG~GNVg~~aa~~l~~~------GAkvva~sds~ 240 (411)
T COG0334 203 DDLEG-ARVAVQGFGNVGQYAAEKLHEL------GAKVVAVSDSK 240 (411)
T ss_pred CCcCC-CEEEEECccHHHHHHHHHHHHc------CCEEEEEEcCC
Confidence 35999 9999999999999999999988 99877666653
No 447
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=89.88 E-value=0.94 Score=45.38 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=43.4
Q ss_pred EEEEEcccchHHH-HHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEc
Q 021401 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 113 kIgIIG~G~mG~A-lA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
+|-|||.|-.|.+ +|+.|++. |++|.+.+.......+..++.|+... .....+.++++|+||+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIY---IGHSAENLDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEe---CCCCHHHCCCCCEEEEC
Confidence 3779999999998 99999999 99986655443222233445576531 11223567789999884
No 448
>PRK06057 short chain dehydrogenase; Provisional
Probab=89.86 E-value=1.9 Score=38.96 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=31.5
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021401 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (313)
Q Consensus 106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~ 149 (313)
..++| ++|-|+|. |-||.++++.+.+. |++|++..++
T Consensus 3 ~~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~ 40 (255)
T PRK06057 3 QRLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDID 40 (255)
T ss_pred ccCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 34788 99999996 89999999999998 9988766654
No 449
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=89.68 E-value=2.9 Score=40.38 Aligned_cols=92 Identities=17% Similarity=0.223 Sum_probs=55.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc-----cCCEE
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDLV 182 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i~-----~ADvI 182 (313)
+| .+|.|+|.|.+|...++.++.. |...++..+.++...+.+++.|...- +....+..+.+. ..|+|
T Consensus 191 ~g-~~VlV~G~G~vG~~a~~lak~~------G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 191 PG-QSVAVVGLGGVGLSALLGAVAA------GASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEE
Confidence 57 8999999999999999999998 98423444444555677777776310 000011112121 47888
Q ss_pred EEcccchhHHHHHHHHHhcCCCCcEEEE
Q 021401 183 LLLISDAAQADNYEKIFSCMKPNSILGL 210 (313)
Q Consensus 183 iLavP~~a~~~vi~ei~~~mk~gaiLid 210 (313)
+-++.... .++.....++++-.++.
T Consensus 264 id~~G~~~---~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 264 FEMAGSVP---ALETAYEITRRGGTTVT 288 (371)
T ss_pred EECCCChH---HHHHHHHHHhcCCEEEE
Confidence 88875322 33333444555555443
No 450
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=89.66 E-value=1.3 Score=39.77 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=31.8
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021401 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (313)
Q Consensus 106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (313)
..++| +++-|.|. |.+|.++++.|.+. |++|++..+..
T Consensus 3 ~~~~~-~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~ 41 (262)
T PRK13394 3 SNLNG-KTAVVTGAASGIGKEIALELARA------GAAVAIADLNQ 41 (262)
T ss_pred ccCCC-CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCh
Confidence 35778 99999996 99999999999998 99887666553
No 451
>PRK07411 hypothetical protein; Validated
Probab=89.63 E-value=1.2 Score=44.49 Aligned_cols=88 Identities=11% Similarity=0.052 Sum_probs=53.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEEecC------------------C-cccHHHHH---H--
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRK------------------G-SRSFAEAR---A-- 159 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~r~------------------~-~~s~~~A~---~-- 159 (313)
...|+. .+|.|||+|-+|..++++|... |+. +.+.+.. + .+....++ +
T Consensus 33 q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n 105 (390)
T PRK07411 33 QKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN 105 (390)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence 467888 9999999999999999999998 773 3333221 0 01111111 1
Q ss_pred CCc--eecCCCc--CCHHhhhccCCEEEEcccchhHHHHHHHHH
Q 021401 160 AGF--TEENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (313)
Q Consensus 160 ~G~--~~~~~~~--~~~~e~i~~ADvIiLavP~~a~~~vi~ei~ 199 (313)
..+ ....... .+..+.+.++|+|+.++-.-....++++..
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111 0000011 134568899999999988777666777654
No 452
>PRK05867 short chain dehydrogenase; Provisional
Probab=89.58 E-value=1.1 Score=40.45 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=32.2
Q ss_pred ccccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021401 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (313)
Q Consensus 105 ~~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~ 149 (313)
+..++| +++-|.|. |-||.++++.|.+. |.+|++..+.
T Consensus 4 ~~~~~~-k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~ 42 (253)
T PRK05867 4 LFDLHG-KRALITGASTGIGKRVALAYVEA------GAQVAIAARH 42 (253)
T ss_pred cccCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCC
Confidence 346789 99999996 79999999999998 9998776654
No 453
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=89.52 E-value=2.1 Score=41.46 Aligned_cols=90 Identities=9% Similarity=0.168 Sum_probs=67.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhcc--CCEEEEcccc
Q 021401 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (313)
Q Consensus 112 kkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~--ADvIiLavP~ 188 (313)
.+|.|.| .|.-|...-+.+++. |-+++.|...+.. ...-.|+.. ..++.|+-.. .|+.++++|.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~~---~~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa 79 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKG---GTEHLGLPV----FNTVAEAKAETKANASVIYVPP 79 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCCC---CceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6788889 889999999999999 9888888876520 011245553 4578887765 7999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEecCch
Q 021401 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (313)
Q Consensus 189 ~a~~~vi~ei~~~mk~gaiLid~~Gv~ 215 (313)
....+.+++.... .-..+++.++||.
T Consensus 80 ~~v~~al~e~~~~-Gvk~~vIisaGf~ 105 (300)
T PLN00125 80 PFAAAAILEAMEA-ELDLVVCITEGIP 105 (300)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCC
Confidence 9999988876652 2234778899985
No 454
>PRK05717 oxidoreductase; Validated
Probab=89.35 E-value=1.8 Score=39.07 Aligned_cols=37 Identities=22% Similarity=0.048 Sum_probs=31.2
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021401 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (313)
Q Consensus 106 ~~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~ 149 (313)
-.|+| |++-|+| .|.+|.++|+.|.+. |.+|++..+.
T Consensus 6 ~~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~ 43 (255)
T PRK05717 6 PGHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLD 43 (255)
T ss_pred cccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCC
Confidence 46789 9999999 589999999999988 9887766544
No 455
>PRK07825 short chain dehydrogenase; Provisional
Probab=89.33 E-value=2 Score=39.26 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=30.5
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021401 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (313)
Q Consensus 107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~ 149 (313)
.++| +++-|.|. |-+|.++++.|.+. |.+|++..|+
T Consensus 2 ~~~~-~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~ 38 (273)
T PRK07825 2 DLRG-KVVAITGGARGIGLATARALAAL------GARVAIGDLD 38 (273)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECC
Confidence 4678 99999995 79999999999998 9988776654
No 456
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.29 E-value=2.2 Score=39.79 Aligned_cols=94 Identities=18% Similarity=0.133 Sum_probs=56.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHh----hhccCCEEE
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TISGSDLVL 183 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e----~i~~ADvIi 183 (313)
+| .+|.|+|.|.+|.++++.++.. |.++++....+++..+.+.+.|...- +....+..+ .-+..|+++
T Consensus 159 ~g-~~vlI~g~g~vg~~~~~la~~~------G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~ 231 (334)
T cd08234 159 PG-DSVLVFGAGPIGLLLAQLLKLN------GASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVI 231 (334)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEE
Confidence 57 8999999999999999999998 98733444444444555556664210 000011110 124689999
Q ss_pred EcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 184 LavP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
-++... ..+.+....|+++..+++.+
T Consensus 232 ~~~~~~---~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 232 EATGVP---KTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred ECCCCh---HHHHHHHHHHhcCCEEEEEe
Confidence 887632 24445555566666655443
No 457
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=89.24 E-value=2.8 Score=39.85 Aligned_cols=94 Identities=19% Similarity=0.291 Sum_probs=59.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHH----hhh--ccCCE
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETI--SGSDL 181 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~----e~i--~~ADv 181 (313)
+| .+|.|.|.|.+|...++.++.. |..+++..+.+++..+.+++.|...- +....+.. +.. +..|+
T Consensus 166 ~g-~~vlI~g~g~iG~~~~~lak~~------G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 166 LG-DTVAVFGIGPVGLMAVAGARLR------GAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 47 8999999999999999999988 88644555555555677777775210 00001221 122 24799
Q ss_pred EEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
|+-++... +.+.+....++++..++..+
T Consensus 239 vld~~g~~---~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 239 VIIAGGGQ---DTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEEEec
Confidence 88877643 24555566677776665443
No 458
>PLN02740 Alcohol dehydrogenase-like
Probab=89.18 E-value=2.7 Score=40.95 Aligned_cols=46 Identities=22% Similarity=0.466 Sum_probs=36.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCc
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF 162 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~ 162 (313)
+| .++.|+|.|.+|...++.++.. |. +|+ ..+.+++..+.+++.|.
T Consensus 198 ~g-~~VlV~G~G~vG~~a~q~ak~~------G~~~Vi-~~~~~~~r~~~a~~~Ga 244 (381)
T PLN02740 198 AG-SSVAIFGLGAVGLAVAEGARAR------GASKII-GVDINPEKFEKGKEMGI 244 (381)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCCcEE-EEcCChHHHHHHHHcCC
Confidence 47 8999999999999999999998 98 454 44444555677777775
No 459
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=89.16 E-value=0.69 Score=43.80 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=29.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEE
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vi 144 (313)
.+|+| ++|.|.|+|++|...|+.|.+. |.+|+
T Consensus 34 ~~l~g-~~vaIqGfGnVG~~~a~~L~e~------Gakvv 65 (254)
T cd05313 34 ETLKG-KRVAISGSGNVAQYAAEKLLEL------GAKVV 65 (254)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 67899 9999999999999999999998 99876
No 460
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=89.11 E-value=1.2 Score=44.94 Aligned_cols=86 Identities=20% Similarity=0.184 Sum_probs=56.6
Q ss_pred cCCCCEEEEEccc----------chHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC--CceecCCCcCCHHhh
Q 021401 108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYET 175 (313)
Q Consensus 108 l~GikkIgIIG~G----------~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~~~~~~~~~~~e~ 175 (313)
|+| |+|||.|+- +-...++..|.+. |.+|++++... .+.+... ++. ...+.+++
T Consensus 308 l~G-k~iavlgLafKpnTDD~ReSpa~~vi~~L~~~------Ga~V~aYDP~a---~~~~~~~~~~~~----~~~~~~~~ 373 (414)
T COG1004 308 LKG-KTIAVLGLAFKPNTDDMRESPALDIIKRLQEK------GAEVIAYDPVA---MENAFRNFPDVE----LESDAEEA 373 (414)
T ss_pred CCC-cEEEEEEEeecCCCccchhchHHHHHHHHHHC------CCEEEEECchh---hHHHHhcCCCce----EeCCHHHH
Confidence 999 999999973 2344566677777 99876554332 2222222 122 25689999
Q ss_pred hccCCEEEEcccchhHHHHH-HHHHhcCCCCcEEEE
Q 021401 176 ISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGL 210 (313)
Q Consensus 176 i~~ADvIiLavP~~a~~~vi-~ei~~~mk~gaiLid 210 (313)
+++||+|++++..++..++= +.+ .||. .+|+|
T Consensus 374 ~~~aDaivi~tew~ef~~~d~~~~--~m~~-~~v~D 406 (414)
T COG1004 374 LKGADAIVINTEWDEFRDLDFEKL--LMKT-PVVID 406 (414)
T ss_pred HhhCCEEEEeccHHHHhccChhhh--hccC-CEEEe
Confidence 99999999999988877643 334 5543 45554
No 461
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=89.10 E-value=1.7 Score=37.60 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=48.1
Q ss_pred EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCCHHhhhccCCEEEEcccchhHH
Q 021401 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (313)
Q Consensus 113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~i~~ADvIiLavP~~a~~ 192 (313)
++.|+|.|..|..++..|++. |++++-..+.+.... ...-.|+..- +...++.+..++.|.+++++++....
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~------g~~vvgfid~~~~~~-~~~i~g~pvl-g~~~~l~~~~~~~~~~iiai~~~~~~ 72 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS------GWEIVGFLDDNPALQ-GTSVDGLPVL-GGDEDLLRYPPDEVDLVVAIGDNKLR 72 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCEEEEEEcCCcccc-CcccCCccEE-CCHHHHhhhcccccEEEEEcCCHHHH
Confidence 367999999999999999988 998776665543211 1112344320 01112333345568899999755544
Q ss_pred -HHHHHHHh
Q 021401 193 -DNYEKIFS 200 (313)
Q Consensus 193 -~vi~ei~~ 200 (313)
++++.+..
T Consensus 73 ~~i~~~l~~ 81 (201)
T TIGR03570 73 RRLFEKLKA 81 (201)
T ss_pred HHHHHHHHh
Confidence 35555443
No 462
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=89.09 E-value=0.62 Score=45.04 Aligned_cols=62 Identities=24% Similarity=0.233 Sum_probs=39.9
Q ss_pred EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC-cccHHHHHHCCceecCCCcCC---HHhhhccCCEEEE
Q 021401 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (313)
Q Consensus 113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~---~~e~i~~ADvIiL 184 (313)
+|||||.|..|..+++.+++. |+++++..... ......+. .-++. ...+ +.++++.+|+|..
T Consensus 1 ~igiiG~gql~~~l~~aa~~l------G~~v~~~d~~~~~p~~~~ad-~~~~~---~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPL------GIKVHVLDPDANSPAVQVAD-HVVLA---PFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHc------CCEEEEECCCCCCChhHhCc-eeEeC---CCCCHHHHHHHHhhCCEEEe
Confidence 589999999999999999999 99876654432 22222221 11211 1223 5567788998754
No 463
>PRK10083 putative oxidoreductase; Provisional
Probab=89.05 E-value=4.3 Score=38.12 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=57.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHh-chhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhhc----cCCE
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDL 181 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~-~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~i~----~ADv 181 (313)
-+| .+|.|+|.|.+|...++.++. . |.++++..+..++..+.+.+.|...- +....+..+.+. +.|+
T Consensus 159 ~~g-~~vlI~g~g~vG~~~~~~a~~~~------G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 159 TEQ-DVALIYGAGPVGLTIVQVLKGVY------NVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCE
Confidence 357 899999999999999988885 6 87655666555556667777775210 000112334342 3467
Q ss_pred EEEcccchhHHHHHHHHHhcCCCCcEEEEe
Q 021401 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (313)
Q Consensus 182 IiLavP~~a~~~vi~ei~~~mk~gaiLid~ 211 (313)
|+-++... ..+.+....++++-.+++.
T Consensus 232 vid~~g~~---~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 232 IIDAACHP---SILEEAVTLASPAARIVLM 258 (339)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEEEE
Confidence 77777632 2344445566666655544
No 464
>PLN02827 Alcohol dehydrogenase-like
Probab=88.93 E-value=3.3 Score=40.43 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=37.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (313)
+| .++.|+|.|.+|...++.++.. |..+++..+.+++..+.+.+.|.
T Consensus 193 ~g-~~VlV~G~G~vG~~~iqlak~~------G~~~vi~~~~~~~~~~~a~~lGa 239 (378)
T PLN02827 193 KG-SSVVIFGLGTVGLSVAQGAKLR------GASQIIGVDINPEKAEKAKTFGV 239 (378)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCC
Confidence 57 9999999999999999999998 98645555544455667777776
No 465
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=88.91 E-value=1.4 Score=39.70 Aligned_cols=37 Identities=24% Similarity=0.186 Sum_probs=31.6
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021401 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (313)
Q Consensus 106 ~~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~ 149 (313)
.+|+| |++.|.| .|.+|.++++.|.+. |++|++..|.
T Consensus 6 ~~~~~-k~vlItGa~g~iG~~ia~~l~~~------G~~V~~~~r~ 43 (255)
T PRK07523 6 FDLTG-RRALVTGSSQGIGYALAEGLAQA------GAEVILNGRD 43 (255)
T ss_pred cCCCC-CEEEEECCcchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 35789 9999999 589999999999998 9998766654
No 466
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=88.91 E-value=1.7 Score=41.79 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=29.4
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcE-EEEEe
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGL 147 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~-Vivg~ 147 (313)
++-|.. .+|.|||+|-+|..+|++|... |+. +.+.+
T Consensus 14 q~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D 50 (286)
T cd01491 14 MKKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHD 50 (286)
T ss_pred HHHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEc
Confidence 456777 9999999999999999999988 874 44443
No 467
>PRK07774 short chain dehydrogenase; Provisional
Probab=88.79 E-value=3.3 Score=36.98 Aligned_cols=37 Identities=27% Similarity=0.238 Sum_probs=31.7
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021401 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (313)
Q Consensus 106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~ 149 (313)
..++| +++-|+|. |-+|.++++.|.+. |++|++..|.
T Consensus 2 ~~~~~-k~vlItGasg~iG~~la~~l~~~------g~~vi~~~r~ 39 (250)
T PRK07774 2 GRFDD-KVAIVTGAAGGIGQAYAEALARE------GASVVVADIN 39 (250)
T ss_pred cccCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCC
Confidence 35788 99999996 99999999999998 9988776665
No 468
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=88.76 E-value=4.3 Score=39.14 Aligned_cols=86 Identities=21% Similarity=0.270 Sum_probs=52.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhh-----cc
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETI-----SG 178 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~i-----~~ 178 (313)
.+| .++.|+|.|.+|...++.++.. |. +|+ .....+...+.+++.|...- +... .+..+.+ ..
T Consensus 183 ~~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~Vi-~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g 254 (365)
T cd08277 183 EPG-STVAVFGLGAVGLSAIMGAKIA------GASRII-GVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGG 254 (365)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCC
Confidence 357 8999999999999999999998 98 454 44444455666777775210 0000 0112212 24
Q ss_pred CCEEEEcccchhHHHHHHHHHhcCCC
Q 021401 179 SDLVLLLISDAAQADNYEKIFSCMKP 204 (313)
Q Consensus 179 ADvIiLavP~~a~~~vi~ei~~~mk~ 204 (313)
.|+|+-++... ..+.+....+++
T Consensus 255 ~d~vid~~g~~---~~~~~~~~~l~~ 277 (365)
T cd08277 255 VDYSFECTGNA---DLMNEALESTKL 277 (365)
T ss_pred CCEEEECCCCh---HHHHHHHHhccc
Confidence 78888777642 234445556654
No 469
>PRK09242 tropinone reductase; Provisional
Probab=88.62 E-value=3.8 Score=36.92 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=31.2
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021401 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (313)
Q Consensus 107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (313)
.++| |++-|+|. |.||.++++.|.+. |++|++..|..
T Consensus 6 ~~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~ 43 (257)
T PRK09242 6 RLDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDA 43 (257)
T ss_pred ccCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 4678 99999994 79999999999998 99987776653
No 470
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.50 E-value=1.8 Score=43.21 Aligned_cols=67 Identities=28% Similarity=0.293 Sum_probs=42.9
Q ss_pred EEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHH----HHHHCCceecCCCcCC---HHhhhccCCEEEEc
Q 021401 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (313)
Q Consensus 113 kIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~----~A~~~G~~~~~~~~~~---~~e~i~~ADvIiLa 185 (313)
+|.|||.|..|.+.|+.|.+. |++|.+.++....... .-.+.|+...-+...+ ..+.+.+.|+|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEEC
Confidence 689999999999999999999 9987766544322121 1234565431111111 11357789999883
No 471
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=88.50 E-value=0.66 Score=42.87 Aligned_cols=66 Identities=17% Similarity=0.088 Sum_probs=42.6
Q ss_pred EEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhh------cc-CCE
Q 021401 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETI------SG-SDL 181 (313)
Q Consensus 113 kIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~---~~~~e~i------~~-ADv 181 (313)
+|.|+|. |.+|..+++.|.+. |++|.+..|+.++.. ..++....... .++.+++ .. +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence 4778995 99999999999998 999888877643211 11211000112 2344455 45 899
Q ss_pred EEEcccc
Q 021401 182 VLLLISD 188 (313)
Q Consensus 182 IiLavP~ 188 (313)
|+++.|+
T Consensus 71 v~~~~~~ 77 (285)
T TIGR03649 71 VYLVAPP 77 (285)
T ss_pred EEEeCCC
Confidence 9988775
No 472
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=88.49 E-value=2.9 Score=39.54 Aligned_cols=94 Identities=20% Similarity=0.231 Sum_probs=58.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceec-CCCcCC-HHhhhccCCEEEEc
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETISGSDLVLLL 185 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~-~~e~i~~ADvIiLa 185 (313)
-+| .++.|.|.|.+|.++++.++.. |.++++..+. .+..+.+.+.|...- +....+ ..+.-...|+|+-+
T Consensus 168 ~~g-~~vlV~g~g~vG~~~~~~a~~~------G~~v~~~~~~-~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~ 239 (337)
T cd05283 168 GPG-KRVGVVGIGGLGHLAVKFAKAL------GAEVTAFSRS-PSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDT 239 (337)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEEC
Confidence 357 8999999999999999999998 9876555444 344556666664210 000001 11223567999988
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
++... .+++....++++..+++.+
T Consensus 240 ~g~~~---~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 240 VSASH---DLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred CCCcc---hHHHHHHHhcCCCEEEEEe
Confidence 87642 2445556666666665543
No 473
>PRK06138 short chain dehydrogenase; Provisional
Probab=88.41 E-value=1.8 Score=38.67 Aligned_cols=37 Identities=24% Similarity=0.189 Sum_probs=30.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021401 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (313)
Q Consensus 107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (313)
+|+| +++.|+|. |-+|..+++.|.+. |++|++..|+.
T Consensus 2 ~~~~-k~~lItG~sg~iG~~la~~l~~~------G~~v~~~~r~~ 39 (252)
T PRK06138 2 RLAG-RVAIVTGAGSGIGRATAKLFARE------GARVVVADRDA 39 (252)
T ss_pred CCCC-cEEEEeCCCchHHHHHHHHHHHC------CCeEEEecCCH
Confidence 3678 99999994 89999999999988 99877666653
No 474
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.37 E-value=3.4 Score=39.46 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=36.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCc
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (313)
+| .++.|+|.|.+|...++.++.. |.+|++. ..+++..+.+++.|.
T Consensus 166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~-~~~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAI-DIDPEKLEMMKGFGA 211 (349)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEE-cCCHHHHHHHHHhCC
Confidence 57 8999999999999999999998 9876544 444455667777775
No 475
>PRK12828 short chain dehydrogenase; Provisional
Probab=88.35 E-value=4.7 Score=35.33 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=31.0
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021401 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (313)
Q Consensus 107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (313)
.++| +++-|+| .|.+|.++++.|.+. |.+|++..|+.
T Consensus 4 ~~~~-k~vlItGatg~iG~~la~~l~~~------G~~v~~~~r~~ 41 (239)
T PRK12828 4 SLQG-KVVAITGGFGGLGRATAAWLAAR------GARVALIGRGA 41 (239)
T ss_pred CCCC-CEEEEECCCCcHhHHHHHHHHHC------CCeEEEEeCCh
Confidence 3678 9999999 589999999999988 99877666643
No 476
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=88.33 E-value=1 Score=47.33 Aligned_cols=73 Identities=25% Similarity=0.245 Sum_probs=45.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhhccCCE
Q 021401 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDL 181 (313)
Q Consensus 105 ~~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~i~~ADv 181 (313)
...+.. |+|||||-|..|.-+++.+++. |+++++.... +............. ....+ +.++++++|+
T Consensus 17 ~~~~~~-k~IgIIGgGqlg~mla~aA~~l------G~~Vi~ld~~-~~apa~~~AD~~~v--~~~~D~~~l~~~a~~~dv 86 (577)
T PLN02948 17 VHGVSE-TVVGVLGGGQLGRMLCQAASQM------GIKVKVLDPL-EDCPASSVAARHVV--GSFDDRAAVREFAKRCDV 86 (577)
T ss_pred ccCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-CCCchhhhCceeee--CCCCCHHHHHHHHHHCCE
Confidence 345677 9999999999999999999999 9987665443 22111111111111 11223 3455678999
Q ss_pred EEEccc
Q 021401 182 VLLLIS 187 (313)
Q Consensus 182 IiLavP 187 (313)
|.....
T Consensus 87 It~e~e 92 (577)
T PLN02948 87 LTVEIE 92 (577)
T ss_pred EEEecC
Confidence 876544
No 477
>PRK13984 putative oxidoreductase; Provisional
Probab=88.32 E-value=1.8 Score=45.15 Aligned_cols=73 Identities=21% Similarity=0.142 Sum_probs=49.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCc--------------------ccHHHHHHCCceecCC
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENG 167 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~ 167 (313)
-.+ ++|.|||.|..|.+.|..|++. |++|.+..+... ...+...+.|+...-+
T Consensus 281 ~~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~ 353 (604)
T PRK13984 281 KKN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLN 353 (604)
T ss_pred cCC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECC
Confidence 357 9999999999999999999999 998777654321 1123445566532111
Q ss_pred Cc----CCHHhhhccCCEEEEccc
Q 021401 168 TL----GDIYETISGSDLVLLLIS 187 (313)
Q Consensus 168 ~~----~~~~e~i~~ADvIiLavP 187 (313)
+. .+.+++..+.|.|||++-
T Consensus 354 ~~v~~~~~~~~~~~~yD~vilAtG 377 (604)
T PRK13984 354 TRVGKDIPLEELREKHDAVFLSTG 377 (604)
T ss_pred CEeCCcCCHHHHHhcCCEEEEEcC
Confidence 11 133455567999999986
No 478
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=88.31 E-value=2 Score=42.27 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=48.7
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHhchhhhcCCcEEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhhccC
Q 021401 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (313)
Q Consensus 107 ~l~GikkIgIIG~---G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~e~i~~A 179 (313)
.++| .||++||- +++..|++..+...+ |+++.+...++ ....+.+++.|...+ .+.+++|++++|
T Consensus 156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~~~a 227 (338)
T PRK08192 156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMYK-----NVSFTLVSPKELAMPDYVISDIENAGHKIT--ITDQLEGNLDKA 227 (338)
T ss_pred CcCC-CEEEEECcCCCCchHHHHHHHHHHhc-----CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHHccC
Confidence 5899 99999997 588999888765331 78876665442 122344455553211 146889999999
Q ss_pred CEEEEc
Q 021401 180 DLVLLL 185 (313)
Q Consensus 180 DvIiLa 185 (313)
|+|...
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999984
No 479
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=88.22 E-value=2 Score=45.58 Aligned_cols=73 Identities=25% Similarity=0.206 Sum_probs=49.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc--------------------cHHHHHHCCceecCC
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------------SFAEARAAGFTEENG 167 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~--------------------s~~~A~~~G~~~~~~ 167 (313)
-.| ++|+|||.|..|.+.|..|+.. |++|++..+.... ..+...+.|+...-+
T Consensus 191 ~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~ 263 (652)
T PRK12814 191 KSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 467 9999999999999999999998 9988777654211 123445566542111
Q ss_pred Cc----CCHHhhhccCCEEEEccc
Q 021401 168 TL----GDIYETISGSDLVLLLIS 187 (313)
Q Consensus 168 ~~----~~~~e~i~~ADvIiLavP 187 (313)
+. .+.++...+.|.|+|++-
T Consensus 264 ~~v~~dv~~~~~~~~~DaVilAtG 287 (652)
T PRK12814 264 TVFGRDITLEELQKEFDAVLLAVG 287 (652)
T ss_pred CcccCccCHHHHHhhcCEEEEEcC
Confidence 11 134444556999999874
No 480
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=88.21 E-value=1.9 Score=40.21 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=45.2
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccH--HHHHH-CC------ceecCCC-cCCHHhhhc
Q 021401 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF--AEARA-AG------FTEENGT-LGDIYETIS 177 (313)
Q Consensus 109 ~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~--~~A~~-~G------~~~~~~~-~~~~~e~i~ 177 (313)
.| ++|.|.| .|-+|..+++.|.+. |++|++..+...... ..... .+ ++..|-. ....+++++
T Consensus 3 ~~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (322)
T PLN02662 3 EG-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD 75 (322)
T ss_pred CC-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc
Confidence 36 8999999 699999999999999 998876665533211 11110 11 1210100 124567788
Q ss_pred cCCEEEEccc
Q 021401 178 GSDLVLLLIS 187 (313)
Q Consensus 178 ~ADvIiLavP 187 (313)
++|+||-+..
T Consensus 76 ~~d~Vih~A~ 85 (322)
T PLN02662 76 GCEGVFHTAS 85 (322)
T ss_pred CCCEEEEeCC
Confidence 9998887653
No 481
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=88.16 E-value=2 Score=43.48 Aligned_cols=74 Identities=23% Similarity=0.183 Sum_probs=49.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcc--------------------cHHHHHHCCceec
Q 021401 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------------SFAEARAAGFTEE 165 (313)
Q Consensus 106 ~~l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~--------------------s~~~A~~~G~~~~ 165 (313)
..-.| ++|.|||.|..|-+.|..|++. |++|++..+.... ..+...+.|+...
T Consensus 139 ~~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~ 211 (471)
T PRK12810 139 VKRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFR 211 (471)
T ss_pred cCCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEE
Confidence 34467 9999999999999999999998 9988777653210 1234555665421
Q ss_pred CCCc----CCHHhhhccCCEEEEcc
Q 021401 166 NGTL----GDIYETISGSDLVLLLI 186 (313)
Q Consensus 166 ~~~~----~~~~e~i~~ADvIiLav 186 (313)
-++. .+.++.....|.|++++
T Consensus 212 ~~~~v~~~~~~~~~~~~~d~vvlAt 236 (471)
T PRK12810 212 TNVEVGKDITAEELLAEYDAVFLGT 236 (471)
T ss_pred eCCEECCcCCHHHHHhhCCEEEEec
Confidence 1111 13345556899999987
No 482
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.15 E-value=1.8 Score=38.49 Aligned_cols=36 Identities=17% Similarity=0.100 Sum_probs=30.7
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021401 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (313)
Q Consensus 107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~ 149 (313)
+|+| +++.|+|. |-+|.++++.|.+. |.+|++..+.
T Consensus 2 ~~~~-~~~lItG~~g~iG~~~a~~l~~~------G~~vi~~~r~ 38 (253)
T PRK08217 2 DLKD-KVIVITGGAQGLGRAMAEYLAQK------GAKLALIDLN 38 (253)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCC
Confidence 3678 99999997 99999999999998 9887666554
No 483
>PRK06500 short chain dehydrogenase; Provisional
Probab=88.14 E-value=2.4 Score=37.70 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=30.2
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021401 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (313)
Q Consensus 107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~ 149 (313)
.++| +++.|.|. |.+|.++++.|.+. |++|++..++
T Consensus 3 ~~~~-k~vlItGasg~iG~~la~~l~~~------g~~v~~~~r~ 39 (249)
T PRK06500 3 RLQG-KTALITGGTSGIGLETARQFLAE------GARVAITGRD 39 (249)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCC
Confidence 4678 99999995 89999999999998 9987666554
No 484
>PLN02214 cinnamoyl-CoA reductase
Probab=88.13 E-value=1.9 Score=41.40 Aligned_cols=76 Identities=17% Similarity=0.129 Sum_probs=48.0
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHH---HHHC---C--ceecCC-CcCCHHhh
Q 021401 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE---ARAA---G--FTEENG-TLGDIYET 175 (313)
Q Consensus 106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~---A~~~---G--~~~~~~-~~~~~~e~ 175 (313)
..+++ ++|.|.|. |.+|..+++.|.+. |++|+...|........ .... . +...|- ...+++++
T Consensus 6 ~~~~~-~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 6 ASPAG-KTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred ccCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 45678 99999996 99999999999998 99887666643221111 0111 1 121010 01235567
Q ss_pred hccCCEEEEcccc
Q 021401 176 ISGSDLVLLLISD 188 (313)
Q Consensus 176 i~~ADvIiLavP~ 188 (313)
++++|+||-+..+
T Consensus 79 ~~~~d~Vih~A~~ 91 (342)
T PLN02214 79 IDGCDGVFHTASP 91 (342)
T ss_pred HhcCCEEEEecCC
Confidence 8899998887643
No 485
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=88.13 E-value=4.9 Score=36.33 Aligned_cols=43 Identities=16% Similarity=0.102 Sum_probs=34.8
Q ss_pred cccccccccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021401 100 LFKLLPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (313)
Q Consensus 100 ~f~~~~~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~ 149 (313)
.|..+.-.|+| +++-|.|. |-+|.++++.|.+. |++|++..+.
T Consensus 5 ~~~~~~~~l~~-k~vlItGas~gIG~~ia~~l~~~------G~~v~~~~~~ 48 (258)
T PRK06935 5 KFSMDFFSLDG-KVAIVTGGNTGLGQGYAVALAKA------GADIIITTHG 48 (258)
T ss_pred hhccccccCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCC
Confidence 34544457899 99999995 69999999999988 9988777665
No 486
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=88.12 E-value=4 Score=39.49 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=36.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCc
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF 162 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~ 162 (313)
.| .++.|+|.|.+|...++.++.. |. +|+ ..+.+++..+.+++.|.
T Consensus 185 ~g-~~VlV~G~G~iG~~a~q~Ak~~------G~~~Vi-~~~~~~~~~~~a~~~Ga 231 (368)
T TIGR02818 185 EG-DTVAVFGLGGIGLSVIQGARMA------KASRII-AIDINPAKFELAKKLGA 231 (368)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EEcCCHHHHHHHHHhCC
Confidence 47 8999999999999999999998 98 554 44444455667777775
No 487
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=88.05 E-value=0.74 Score=45.00 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=30.1
Q ss_pred CCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021401 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (313)
Q Consensus 111 ikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (313)
|++|.|||.|.+|.+.|..|.+. |.+|++.++..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~------g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR------GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence 46899999999999999999998 99988887653
No 488
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.04 E-value=4.6 Score=35.48 Aligned_cols=38 Identities=26% Similarity=0.190 Sum_probs=31.3
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCc
Q 021401 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (313)
Q Consensus 107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (313)
.++. ++|.|+| .|.+|.++++.|.+. |+++++..+.+.
T Consensus 3 ~~~~-~~vlItGasg~iG~~l~~~l~~~------g~~v~~~~~~~~ 41 (249)
T PRK12825 3 SLMG-RVALVTGAARGLGRAIALRLARA------GADVVVHYRSDE 41 (249)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCeEEEEeCCCH
Confidence 4566 8999998 699999999999998 998776666544
No 489
>PRK06197 short chain dehydrogenase; Provisional
Probab=87.96 E-value=4.6 Score=37.75 Aligned_cols=46 Identities=17% Similarity=0.014 Sum_probs=36.2
Q ss_pred cCCCcccccccccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021401 96 GGRDLFKLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (313)
Q Consensus 96 ~G~w~f~~~~~~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~ 149 (313)
-+.|... .+.+++| +++-|.| .|-||.++++.|.+. |++|++..|.
T Consensus 3 ~~~~~~~-~~~~~~~-k~vlItGas~gIG~~~a~~l~~~------G~~vi~~~r~ 49 (306)
T PRK06197 3 MTKWTAA-DIPDQSG-RVAVVTGANTGLGYETAAALAAK------GAHVVLAVRN 49 (306)
T ss_pred CCCCCcc-ccccCCC-CEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCC
Confidence 3455433 3467899 9999999 589999999999998 9988777665
No 490
>PRK07060 short chain dehydrogenase; Provisional
Probab=87.74 E-value=2.5 Score=37.57 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=31.6
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021401 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (313)
Q Consensus 107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (313)
.++| +++.|.|. |.+|..+++.+.+. |++|++..|..
T Consensus 6 ~~~~-~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~ 43 (245)
T PRK07060 6 DFSG-KSVLVTGASSGIGRACAVALAQR------GARVVAAARNA 43 (245)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 4788 99999997 79999999999998 99877766654
No 491
>PRK12937 short chain dehydrogenase; Provisional
Probab=87.66 E-value=4.4 Score=35.93 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=30.9
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021401 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (313)
Q Consensus 107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (313)
.+++ +++-|+| .|-+|.++++.|.+. |+++++..+++
T Consensus 2 ~~~~-~~vlItG~~~~iG~~la~~l~~~------g~~v~~~~~~~ 39 (245)
T PRK12937 2 TLSN-KVAIVTGASRGIGAAIARRLAAD------GFAVAVNYAGS 39 (245)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCCC
Confidence 4678 9999999 589999999999998 99876665544
No 492
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=87.63 E-value=7.2 Score=36.63 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=56.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hh--ccCC
Q 021401 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TI--SGSD 180 (313)
Q Consensus 108 l~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~i--~~AD 180 (313)
.+| .+|.|.|.|.+|.++++.++.. |. +++.. ...++....+.+.|...-+....+..+ .. ...|
T Consensus 166 ~~~-~~vlI~g~g~vg~~~~~~a~~~------g~~~v~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~d 237 (344)
T cd08284 166 RPG-DTVAVIGCGPVGLCAVLSAQVL------GAARVFAV-DPVPERLERAAALGAEPINFEDAEPVERVREATEGRGAD 237 (344)
T ss_pred ccC-CEEEEECCcHHHHHHHHHHHHc------CCceEEEE-cCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCC
Confidence 467 9999999999999999999999 97 55444 444444556666774210000112222 22 3478
Q ss_pred EEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 181 vIiLavP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
+|+-++... ..+.+....++++..++..+
T Consensus 238 vvid~~~~~---~~~~~~~~~l~~~g~~v~~g 266 (344)
T cd08284 238 VVLEAVGGA---AALDLAFDLVRPGGVISSVG 266 (344)
T ss_pred EEEECCCCH---HHHHHHHHhcccCCEEEEEC
Confidence 888776642 23445555566666665543
No 493
>PRK07478 short chain dehydrogenase; Provisional
Probab=87.61 E-value=2.1 Score=38.62 Aligned_cols=37 Identities=27% Similarity=0.315 Sum_probs=31.1
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021401 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (313)
Q Consensus 107 ~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (313)
.++| +++-|.|. |-+|.++++.|.+. |.+|++..+..
T Consensus 3 ~~~~-k~~lItGas~giG~~ia~~l~~~------G~~v~~~~r~~ 40 (254)
T PRK07478 3 RLNG-KVAIITGASSGIGRAAAKLFARE------GAKVVVGARRQ 40 (254)
T ss_pred CCCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 5678 99999995 78999999999998 99887776653
No 494
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.59 E-value=1.2 Score=39.72 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=31.4
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCC
Q 021401 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (313)
Q Consensus 107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (313)
++++ +++.|+| .|.+|.++++.|.+. |++|++..|+.
T Consensus 2 ~~~~-~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~ 39 (251)
T PRK07231 2 RLEG-KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNE 39 (251)
T ss_pred CcCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 4678 9999999 589999999999998 99977776654
No 495
>PRK06114 short chain dehydrogenase; Provisional
Probab=87.56 E-value=5.9 Score=35.78 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=31.9
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecCCc
Q 021401 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (313)
Q Consensus 107 ~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (313)
.++| +++-|.| .|-||.++|+.|.+. |++|++..++.+
T Consensus 5 ~~~~-k~~lVtG~s~gIG~~ia~~l~~~------G~~v~~~~r~~~ 43 (254)
T PRK06114 5 DLDG-QVAFVTGAGSGIGQRIAIGLAQA------GADVALFDLRTD 43 (254)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCcc
Confidence 5788 9999999 668999999999998 999887776543
No 496
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=87.52 E-value=5.3 Score=38.90 Aligned_cols=97 Identities=15% Similarity=0.232 Sum_probs=60.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHC-CceecCCCcC-CHHhhh----c--cCC
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLG-DIYETI----S--GSD 180 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~-~~~e~i----~--~AD 180 (313)
+| .+|.|+|.|.+|...++.++.. |...+++.+.++...+.+++. +...-+.... +..+.+ . ..|
T Consensus 184 ~g-~~VlV~g~G~vG~~~~~la~~~------g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 184 PG-DTVAVWGCGPVGLFAARSAKLL------GAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCC
Confidence 57 8999999999999999999998 874345554445555666665 3211000011 122222 1 479
Q ss_pred EEEEcccch------------------hHHHHHHHHHhcCCCCcEEEEec
Q 021401 181 LVLLLISDA------------------AQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 181 vIiLavP~~------------------a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
+|+=++... .-...+++....++++..+++.+
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 998887421 12346677778888887776554
No 497
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=87.51 E-value=0.89 Score=43.87 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=66.4
Q ss_pred CEEEEEcccchHHHHHHHHHhchhhhcCCc-EEEEEecCCcccHHHHHHCC-----ceecCCCcCCHHhhhccCCEEEEc
Q 021401 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSDLVLLL 185 (313)
Q Consensus 112 kkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G-----~~~~~~~~~~~~e~i~~ADvIiLa 185 (313)
..+.|+|.|.++........+. .+.+ +|.++++..+...+.|.... +.-+-....+.+++++.+|+|+-+
T Consensus 139 ~vL~i~GsG~qA~~hi~ih~~~----~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~a 214 (333)
T KOG3007|consen 139 CVLTIFGSGLQAFWHIYIHIKL----IPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGA 214 (333)
T ss_pred eEEEEEcccchhHHHHHHHHHh----cccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEec
Confidence 3567999999999988776554 1112 68899998877777776321 111111245788999999999999
Q ss_pred ccchhHHHHHHHHHhcCCCCcEEEEecCchh
Q 021401 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (313)
Q Consensus 186 vP~~a~~~vi~ei~~~mk~gaiLid~~Gv~l 216 (313)
++-..- -+ ....+|||+-|-.+++++.
T Consensus 215 tlsteP-il---fgewlkpgthIdlVGsf~p 241 (333)
T KOG3007|consen 215 TLSTEP-IL---FGEWLKPGTHIDLVGSFKP 241 (333)
T ss_pred cccCCc-ee---eeeeecCCceEeeeccCCc
Confidence 885421 11 1246789988888999864
No 498
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.44 E-value=1 Score=47.37 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=31.9
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHhchhhhcCCcEEEEEecCCc
Q 021401 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (313)
Q Consensus 106 ~~l~GikkIgIIG~-G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (313)
.-.+| ++|.|.|. |.+|..+++.|.+. |++|++..|...
T Consensus 76 ~~~~g-KvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~e 115 (576)
T PLN03209 76 DTKDE-DLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQ 115 (576)
T ss_pred ccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHH
Confidence 34467 99999995 99999999999998 999877776543
No 499
>PRK05876 short chain dehydrogenase; Provisional
Probab=87.36 E-value=2 Score=39.92 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=32.3
Q ss_pred ccccCCCCEEEEEc-ccchHHHHHHHHHhchhhhcCCcEEEEEecC
Q 021401 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (313)
Q Consensus 105 ~~~l~GikkIgIIG-~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~ 149 (313)
+++|+| +++-|.| .|-+|.++|+.|.+. |.+|++..++
T Consensus 1 ~~~~~~-k~vlVTGas~gIG~ala~~La~~------G~~Vv~~~r~ 39 (275)
T PRK05876 1 MDGFPG-RGAVITGGASGIGLATGTEFARR------GARVVLGDVD 39 (275)
T ss_pred CCCcCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCC
Confidence 356889 9999998 779999999999998 9998776655
No 500
>PLN02702 L-idonate 5-dehydrogenase
Probab=87.29 E-value=4.7 Score=38.64 Aligned_cols=94 Identities=14% Similarity=0.128 Sum_probs=59.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHhchhhhcCCcEEEEEecCCcccHHHHHHCCceecC---CCcCCHHhhh--------c
Q 021401 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---GTLGDIYETI--------S 177 (313)
Q Consensus 109 ~GikkIgIIG~G~mG~AlA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~---~~~~~~~e~i--------~ 177 (313)
+| .+|.|+|.|.+|....+.++.. |.++++..+......+.+.+.|..... ....+..+.+ .
T Consensus 181 ~g-~~vlI~g~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (364)
T PLN02702 181 PE-TNVLVMGAGPIGLVTMLAARAF------GAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVESEVEEIQKAMGG 253 (364)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHhCCCEEEecCcccccHHHHHHHHhhhcCC
Confidence 57 8999999999999999999998 986555555555555666677753200 0001222211 2
Q ss_pred cCCEEEEcccchhHHHHHHHHHhcCCCCcEEEEec
Q 021401 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (313)
Q Consensus 178 ~ADvIiLavP~~a~~~vi~ei~~~mk~gaiLid~~ 212 (313)
..|+|+-++.... .+.+....++++..+++.+
T Consensus 254 ~~d~vid~~g~~~---~~~~~~~~l~~~G~~v~~g 285 (364)
T PLN02702 254 GIDVSFDCVGFNK---TMSTALEATRAGGKVCLVG 285 (364)
T ss_pred CCCEEEECCCCHH---HHHHHHHHHhcCCEEEEEc
Confidence 4799998887432 3555566677776666544
Done!