RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021401
(313 letters)
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein);
rossmann fold, NADPH, knotted protein, branched-chain
amino biosynthesis; 1.55A {Oryza sativa japonica group}
PDB: 3fr8_A* 1qmg_A* 1yve_I*
Length = 525
Score = 346 bits (890), Expect = e-117
Identities = 211/235 (89%), Positives = 224/235 (95%)
Query: 72 LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +E+IVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 15 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 74
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 75 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 134
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 135 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 194
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEYKSDIFGER
Sbjct: 195 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGER 249
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot,
C-terminal alpha-helical domain oxidoreductase; 2.00A
{Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Length = 338
Score = 150 bits (380), Expect = 4e-43
Identities = 65/195 (33%), Positives = 102/195 (52%), Gaps = 22/195 (11%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG A A NL+DS + V VGLR GS + A+A A G + D+
Sbjct: 19 VAIIGYGSQGHAHACNLKDSGVD------VTVGLRSGSATVAKAEAHGL-----KVADVK 67
Query: 174 ETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
++ +D+V++L D Q Y++ I +K + L +HGF + H + ++ V
Sbjct: 68 TAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSI-HYNQV--VPRADLDV 124
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTF 290
I + PK G +VR +V+G GI A++QD G A NVAL ++ +G
Sbjct: 125 IMIAPKAPGHTVRSEFVKGG-----GIPDLIAIYQDASGNAKNVALSYACGVGGGRTGII 179
Query: 291 ATTLEQEYKSDIFGE 305
TT + E ++D+FGE
Sbjct: 180 ETTFKDETETDLFGE 194
>1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid
biosynthesis, knotted protein, oxidoreductase; 2.60A
{Escherichia coli}
Length = 491
Score = 144 bits (364), Expect = 1e-39
Identities = 61/203 (30%), Positives = 88/203 (43%), Gaps = 32/203 (15%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-----RSFAEARAAGFTEENGT 168
+ ++G G+QG Q N+RDS + + LRK + S+ +A GF
Sbjct: 40 VVIVGCGAQGLNQGLNMRDSGLD------ISYALRKEAIAEKRASWRKATENGF-----K 88
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPK 228
+G E I +DLV+ L D +D + MK + LG SHGF + K
Sbjct: 89 VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNI-VEVGE--QIRK 145
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGS 286
+I V+ V PK G VR Y +G G+ + AVH D G +A W+ A G
Sbjct: 146 DITVVMVAPKCPGTEVREEYKRGF-----GVPTLIAVHPENDPKGEGMAIAKAWAAATGG 200
Query: 287 PFTFA----TTLEQEYKSDIFGE 305
A ++ E KSD+ GE
Sbjct: 201 --HRAGVLESSFVAEVKSDLMGE 221
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 55.1 bits (132), Expect = 6e-09
Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 20/173 (11%)
Query: 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ ++G G G + + DS + + G L D
Sbjct: 14 VAILGAGGKMGARITRKIHDSAHHL-------AAIEIAPEGRDRLQGMGIP-----LTDG 61
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF--LLGHLQSIGLDFPKNI 230
I +D+V+L + D E I ++P +I+ + G + +I
Sbjct: 62 DGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMPE-----RADI 116
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
P + GI V + G + A+G +
Sbjct: 117 TYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADIC 169
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 8e-06
Identities = 56/290 (19%), Positives = 92/290 (31%), Gaps = 90/290 (31%)
Query: 15 FSPSPSSET-LKGAFKHLNLAF---------FSSTAKSLRALKTTRGRGSALGAQMASET 64
+ + S E+ K + + F + +T+ L+ + + + M S +
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 65 ALKTPFLLDF------ETSVFKKDAISLAN-RDEFIVRGG-RDLFKLLPD-----AFNGI 111
L + D+ K+ ISL N +V G + L+ L A +G+
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 112 NQIGVIGWGSQGPAQAQNLRDS--------------LAEAKSDIVVKVGLRKGSRSFAEA 157
+Q S+ P + L+ S L A I L K + SF A
Sbjct: 403 DQ-------SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI--NKDLVKNNVSFN-A 452
Query: 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCM--KP-----NSILGL 210
+ +Y+T GSDL E+I C+ P +
Sbjct: 453 KDIQIP--------VYDTFDGSDL------RVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 211 SHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259
+H I LDF P G + G+G R G G +
Sbjct: 499 TH---------I-LDFGP---GGAS----GLGVLTHRN-KDGT---GVRV 527
Score = 38.9 bits (90), Expect = 0.002
Identities = 66/398 (16%), Positives = 108/398 (27%), Gaps = 150/398 (37%)
Query: 5 TLPSSPSIPKFSPSPSSET-LKGAFKHLNLAFFSSTAKSLRALKTTRGRGSALGAQMASE 63
LP P++ L G F L + SS + +
Sbjct: 40 ILPEPTEGFAADDEPTTPAELVGKF----LGYVSSLVEP--------------SKVGQFD 81
Query: 64 TALKTPFLLDFETSVFK-KD----AISLANRDEFIVRGGRDLFK---------------- 102
L L +FE + D A L ++ + ++L K
Sbjct: 82 QVLNL-CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 103 ----LLPDAFNGINQIGVIGWGSQGPAQA-----QNLRDSLAEAKSDIVVKVG--LRKGS 151
L G Q+ I +G QG ++L + D++ L +
Sbjct: 141 SNSALFRAVGEGNAQLVAI-FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI 199
Query: 152 RSFAEARAA---GFTEENGTLGDIYETISGSD-------LVLLLIS----DAAQADNYEK 197
R+ +A G +I E + L+ + IS Q +Y
Sbjct: 200 RTTLDAEKVFTQGL--------NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHY-- 249
Query: 198 IFSCMKPNSILGLSHGFLLGHLQSI-----GL-------------DFPKN---------- 229
+ + +LG + G L +L+ GL F +
Sbjct: 250 VVTA----KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF 305
Query: 230 IGV--------IAVCPK--------GMG-PS----VRRL---YVQGKEINGAGINSSFAV 265
IGV ++ P G PS + L VQ + NS
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ-DYV--NKTNSHLPA 362
Query: 266 HQDV-----DGRATNVALGWSVALGSP---FTFATTLE 295
+ V +G V V+ G P + TL
Sbjct: 363 GKQVEISLVNGAKNLV-----VS-GPPQSLYGLNLTLR 394
Score = 37.7 bits (87), Expect = 0.004
Identities = 45/251 (17%), Positives = 70/251 (27%), Gaps = 95/251 (37%)
Query: 120 GSQGPAQAQNLRDSLAEAK------------------SDIV--------VKVGLRKGSR- 152
GSQ +L + A+ DIV + G KG R
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 153 ----------SFAEARAAG---FTEENGTLGDIYETISGSDLVL----------LLISDA 189
+ + + F E N T +L L+ A
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSY--TFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIG----LDFPKNIGVIAVCPKG-MGPS- 243
F +K ++ F GH S+G L M
Sbjct: 1743 --------AFEDLKSKGLIPADATF-AGH--SLGEYAAL----------ASLADVMSIES 1781
Query: 244 -VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDI 302
V ++ +G + AV +D GR +N + +A+ P A + QE +
Sbjct: 1782 LVEVVFYRGMTMQ-------VAVPRDELGR-SNYGM---IAIN-PGRVAASFSQEALQYV 1829
Query: 303 ---FGEREGSL 310
G+R G L
Sbjct: 1830 VERVGKRTGWL 1840
Score = 28.1 bits (62), Expect = 5.7
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 25/123 (20%)
Query: 33 LAFFSSTAKSLR---ALKTTRGRGSALGAQMASETALKTPFLL-----DFETSVFKKDAI 84
LA S A + ++ RG + + + ++ + + + F ++A+
Sbjct: 1770 LA---SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Query: 85 SLANRDEFIVRGGRDLFKLLPDA-FNGINQIGVIGWGSQGPAQA----QNLRDSLAEAKS 139
+ R G+ L+ +N NQ V G +A N+ + + K
Sbjct: 1827 -----QYVVERVGKRTGWLVEIVNYNVENQQYVAA----GDLRALDTVTNVLNFIKLQKI 1877
Query: 140 DIV 142
DI+
Sbjct: 1878 DII 1880
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 6e-05
Identities = 30/269 (11%), Positives = 76/269 (28%), Gaps = 100/269 (37%)
Query: 41 KSLRALKTTRG------RGSALGAQ-MASETALKTPFLLDFETSVFKKDAISLANRDEFI 93
++L L+ + GS G +A + L + +F ++L N +
Sbjct: 142 QALLELRPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIF---WLNLKNCNS-- 194
Query: 94 VRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKS-------------- 139
+ ++L I+ + + N++ + ++
Sbjct: 195 ---PETVLEMLQKLLYQIDPN-----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 140 -----DI----VVK--------------------VGLRKGSRSFAEARAAGFTEE----- 165
++ + + + + T +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 166 -----NGTLGDI-YETISGSDLVLLLIS-----DAAQADNYEKIFSCMKPNSILGLSHGF 214
+ D+ E ++ + L +I+ A DN++ + +C K +I+ S
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-NCDKLTTIIESS--- 362
Query: 215 LLGHLQ-----------SIGLDFPKNIGV 232
L L+ S+ FP + +
Sbjct: 363 -LNVLEPAEYRKMFDRLSV---FPPSAHI 387
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 42.5 bits (99), Expect = 1e-04
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 14/165 (8%)
Query: 114 IGVIGWGSQGPAQAQNL-------------RDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160
+ V G G+ + AE + + L +
Sbjct: 5 VCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTE 64
Query: 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220
+ D ISG+D+V+L + A ++ + ++ ++++ Q
Sbjct: 65 VKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQ 124
Query: 221 SIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
+ +++ P R+ G+++ G S A
Sbjct: 125 CRDI-LGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVLAA 168
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 34.5 bits (79), Expect = 0.033
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 4/96 (4%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
I IG+G + A L + + LR + + A A E D
Sbjct: 26 TIAFIGFGEAAQSIAGGLGG----RNAARLAAYDLRFNDPAASGALRARAAELGVEPLDD 81
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIL 208
I+ +D+VL L+ AA + ++
Sbjct: 82 VAGIACADVVLSLVVGAATKAVAASAAPHLSDEAVF 117
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 32.9 bits (74), Expect = 0.096
Identities = 13/114 (11%), Positives = 29/114 (25%), Gaps = 11/114 (9%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +G G+ + L+D + + SRS AR G +
Sbjct: 5 LNFVGTGTLTRFFLECLKDRYE------IGYIL----SRSIDRARNLA-EVYGGKAATLE 53
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFP 227
+ + +V +++ D + + P
Sbjct: 54 KHPELNGVVFVIVPDRYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIHP 107
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 31.9 bits (72), Expect = 0.19
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 12/80 (15%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+G++G G + A L S V V GSR+ R A +
Sbjct: 31 VGILGSGDFARSLATRL------VGSGFKVVV----GSRNP--KRTARLFPSAAQVTFQE 78
Query: 174 ETISGSDLVLLLISDAAQAD 193
E +S +++ + + +
Sbjct: 79 EAVSSPEVIFVAVFREHYSS 98
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 30.6 bits (69), Expect = 0.53
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+G IG+G A A L +A + + A G + +
Sbjct: 27 LGFIGFGEAASAIASGL----RQAGAIDMAAYDAASAESWRPRAEELGVS----CKASVA 78
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIL 208
E D++ L++ A + ++ + ++
Sbjct: 79 EVAGECDVIFSLVTAQAALEVAQQAGPHLCEGALY 113
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 30.1 bits (67), Expect = 0.78
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
I +IG G+ A+ L K +V+V SR+ AR E D+
Sbjct: 13 IVLIGAGNLATNLAKALY-----RKGFRIVQVY----SRTEESARELAQKVEAEYTTDLA 63
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213
E + L ++ + D+A A+ + I + +++ + G
Sbjct: 64 EVNPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVHTAG 103
>1zzg_A Glucose-6-phosphate isomerase; structural genomics, riken
structural genomics/PR initiative, RSGI, NPPSFA; 1.95A
{Thermus thermophilus}
Length = 415
Score = 27.9 bits (63), Expect = 4.2
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 1/19 (5%)
Query: 53 GSALGAQMASETALKTPFL 71
GSALG + A +
Sbjct: 76 GSALGPKALEA-AFNESGV 93
>1unf_X Iron superoxide dismutase; oxidoreductase, eukaryotic,
metalloprotein; 1.97A {Vigna unguiculata} SCOP: a.2.11.1
d.44.1.1
Length = 238
Score = 27.3 bits (61), Expect = 6.8
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 165 ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPN 205
+ +L +I T +L ++AAQ N++ + CMKP
Sbjct: 65 DGKSLEEIIVTAYNKGDILPAFNNAAQVWNHDFFWECMKPG 105
>2q8n_A Glucose-6-phosphate isomerase; TM1385, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; HET: 2PE; 1.82A {Thermotoga maritima MSB8}
Length = 460
Score = 27.2 bits (61), Expect = 7.3
Identities = 5/18 (27%), Positives = 7/18 (38%), Gaps = 1/18 (5%)
Query: 53 GSALGAQMASETALKTPF 70
GS LG +L+
Sbjct: 88 GSGLGNLALHY-SLRPLN 104
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 27.5 bits (61), Expect = 7.3
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 15/68 (22%)
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYE-----KIFSCMKPNSILGLSHGFLLGHLQSIG 223
+ + IS D+V I + Q + + S + P S + G + G +
Sbjct: 345 VAEAANCISLGDIVEKKIRSSEQ--LWSLLPLHAVLSSVYPASKV---AGHMAGRIN--- 396
Query: 224 LDFPKNIG 231
F +G
Sbjct: 397 --FTAWLG 402
>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP,
oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo
sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*
Length = 322
Score = 26.8 bits (60), Expect = 10.0
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG--TLGD 171
+G IG G A A+ + A I+ S + + G
Sbjct: 25 VGFIGAGQLAFALAKGFTAAGVLAAHKIMA-------SSPDMDLATVSALRKMGVKLTPH 77
Query: 172 IYETISGSDLVLL 184
ET+ SD++ L
Sbjct: 78 NKETVQHSDVLFL 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.381
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,631,977
Number of extensions: 286014
Number of successful extensions: 582
Number of sequences better than 10.0: 1
Number of HSP's gapped: 565
Number of HSP's successfully gapped: 25
Length of query: 313
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 220
Effective length of database: 4,105,140
Effective search space: 903130800
Effective search space used: 903130800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.0 bits)