Query 021402
Match_columns 313
No_of_seqs 136 out of 220
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 03:38:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4day_C Fanconi anemia group M 28.1 17 0.00059 24.2 0.7 20 213-232 13-32 (37)
2 2yy8_A ATRM56, UPF0106 protein 11.4 71 0.0024 28.5 0.9 23 133-155 140-165 (201)
3 2o3a_A UPF0106 protein AF_0751 9.0 1.2E+02 0.004 26.7 1.4 22 133-155 137-161 (178)
4 3zyw_A Glutaredoxin-3; metal b 8.1 1.8E+02 0.0061 22.3 2.1 55 162-219 8-78 (111)
5 3l4n_A Monothiol glutaredoxin- 8.1 2E+02 0.0067 22.9 2.4 56 163-219 7-77 (127)
6 2zou_A Spondin-1; beta-sandwic 7.2 1.6E+02 0.0053 24.4 1.4 24 220-243 54-80 (149)
7 3bqa_A Sensor protein PHOQ; hi 7.2 92 0.0031 26.6 -0.1 21 182-202 70-90 (148)
8 4b3n_A Maltose-binding peripla 6.9 1.1E+02 0.0036 30.4 0.2 19 173-194 460-478 (602)
9 2dgb_A Hypothetical protein PU 6.6 2.1E+02 0.0073 21.3 1.7 33 184-217 38-71 (84)
10 3uv9_A TRIM5alpha, tripartite 6.3 1.2E+02 0.0042 25.8 0.2 21 172-195 39-59 (186)
No 1
>4day_C Fanconi anemia group M protein; OB fold, protein binding-hydrolase complex; 3.30A {Homo sapiens}
Probab=28.12 E-value=17 Score=24.25 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=15.3
Q ss_pred cceEEEeeeEeeccCCCCcc
Q 021402 213 ITTLTVDLAFLLESQTESEL 232 (313)
Q Consensus 213 ~k~LvvD~gFvIEG~~eeEL 232 (313)
+=++..|+||.++...+|.+
T Consensus 13 LFSVnFDLGf~~~dSDde~~ 32 (37)
T 4day_C 13 LFSVTFDLGFCSPDSDDEIL 32 (37)
T ss_pred eEEEEeccccccCCcchhhh
Confidence 34688999999998775544
No 2
>2yy8_A ATRM56, UPF0106 protein PH0461; DEEP trefoil knot, structural genomics, NPPSFA; HET: SAM MTA; 2.48A {Pyrococcus horikoshii}
Probab=11.41 E-value=71 Score=28.53 Aligned_cols=23 Identities=30% Similarity=0.739 Sum_probs=19.7
Q ss_pred hhHHHHhhC---ChhhhccceeEEee
Q 021402 133 SLVDRFLKG---DDAFRLSRLKLIAN 155 (313)
Q Consensus 133 ~Ll~rFl~G---DD~fRN~RfKLIp~ 155 (313)
-+|+|+++| +-+|-|.++|+||.
T Consensus 140 vFLDrl~~G~eL~~ef~~Ak~~ViP~ 165 (201)
T 2yy8_A 140 VLLDRLLEGKGLKKEFKGAKIKIVPQ 165 (201)
T ss_dssp HHHHHHTTTGGGGCCCSSCSEEECCC
T ss_pred HHHHHhcCCcchhhccCCCcEEEeec
Confidence 378888888 57999999999996
No 3
>2o3a_A UPF0106 protein AF_0751; structural genomics, unknown function, PSI-2, protein structure initiative; 2.20A {Archaeoglobus fulgidus} SCOP: c.116.1.8
Probab=9.04 E-value=1.2e+02 Score=26.67 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=18.8
Q ss_pred hhHHHHhhC---ChhhhccceeEEee
Q 021402 133 SLVDRFLKG---DDAFRLSRLKLIAN 155 (313)
Q Consensus 133 ~Ll~rFl~G---DD~fRN~RfKLIp~ 155 (313)
-+|+|++ | +-+|-|.++|+||.
T Consensus 137 vFLDrl~-G~el~~~f~~ak~~ViP~ 161 (178)
T 2o3a_A 137 VFLDRVL-GKVFDISFDDAKIKVIPS 161 (178)
T ss_dssp HHHHHHT-CCTTTCCCTTCSSEEECC
T ss_pred HHHHHhh-chHHHhccCCCcEEEeec
Confidence 3788888 8 57999999999996
No 4
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=8.15 E-value=1.8e+02 Score=22.29 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=33.1
Q ss_pred HHHhhhCCCCceeeec-----ceeeeEEe---------cCCEEEEEEEccchHHHHHHHHHhhc--ccceEEEe
Q 021402 162 IVKKAVGEQAICVIGR-----ALSCNYCV---------GENFLEVDMDIGSSMVAKAIVHLAFG--YITTLTVD 219 (313)
Q Consensus 162 iVr~avG~kp~~lLGr-----~l~~~Y~~---------g~nYlEiDVDI~sS~vAr~il~l~~g--~~k~LvvD 219 (313)
.|++++.+.|+.|.+| + .|.|.+ |-.|-|+||+-. .-++.-+.-..| .+..+.||
T Consensus 8 ~v~~~i~~~~Vvlf~kg~~~~~-~Cp~C~~ak~~L~~~gi~y~~~di~~d--~~~~~~l~~~~g~~tvP~ifi~ 78 (111)
T 3zyw_A 8 RLKKLTHAAPCMLFMKGTPQEP-RCGFSKQMVEILHKHNIQFSSFDIFSD--EEVRQGLKAYSSWPTYPQLYVS 78 (111)
T ss_dssp HHHHHHTSSSEEEEESBCSSSB-SSHHHHHHHHHHHHTTCCCEEEEGGGC--HHHHHHHHHHHTCCSSCEEEET
T ss_pred HHHHHHhcCCEEEEEecCCCCC-cchhHHHHHHHHHHcCCCeEEEECcCC--HHHHHHHHHHHCCCCCCEEEEC
Confidence 3667788888777777 5 677763 567988877754 233333322223 45566665
No 5
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=8.11 E-value=2e+02 Score=22.89 Aligned_cols=56 Identities=16% Similarity=0.336 Sum_probs=34.1
Q ss_pred HHhhhCCCCceeeecceeeeEEe------------cCCEEEEEEEccch-HHHHHHHHHhhcc--cceEEEe
Q 021402 163 VKKAVGEQAICVIGRALSCNYCV------------GENFLEVDMDIGSS-MVAKAIVHLAFGY--ITTLTVD 219 (313)
Q Consensus 163 Vr~avG~kp~~lLGr~l~~~Y~~------------g~nYlEiDVDI~sS-~vAr~il~l~~g~--~k~LvvD 219 (313)
+++++...++.|.+++ .|.|.+ +..|-++|||.... .-.+..+.-..|+ +..+.||
T Consensus 7 ~~~ii~~~~Vvvysk~-~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI~ 77 (127)
T 3l4n_A 7 YSLILDLSPIIIFSKS-TCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVN 77 (127)
T ss_dssp HHHHHTSCSEEEEECT-TCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEET
T ss_pred HHHHHccCCEEEEEcC-CCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEEC
Confidence 4456677777777776 666652 46799999998763 3334444333343 5556555
No 6
>2zou_A Spondin-1; beta-sandwich, extracellular protein, cell adhesion, extrace matrix, glycoprotein, secreted; 1.45A {Homo sapiens}
Probab=7.22 E-value=1.6e+02 Score=24.36 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=19.0
Q ss_pred eeEeeccCCCCcc---ccchhceeeec
Q 021402 220 LAFLLESQTESEL---PEQILGAFRFS 243 (313)
Q Consensus 220 ~gFvIEG~~eeEL---PE~lLG~vRl~ 243 (313)
.||+||++.++.. +...+|.+.+.
T Consensus 54 ~GFllqAr~~~~~~~~~~~~vG~F~~~ 80 (149)
T 2zou_A 54 RGFTLIALRENREGDKEEDHAGTFQII 80 (149)
T ss_dssp SEEEEEEEETTCCSCSGGGBCSEEEES
T ss_pred EEEEEEEEecCCccCCCCcceEEEEeC
Confidence 6999999887653 56789999865
No 7
>3bqa_A Sensor protein PHOQ; histidine kinase sensor domain, ATP-binding, inner membrane, magnesium, membrane, metal-binding, nucleotide-binding; 2.00A {Escherichia coli} PDB: 3bq8_A 1yax_A
Probab=7.17 E-value=92 Score=26.55 Aligned_cols=21 Identities=14% Similarity=0.446 Sum_probs=16.2
Q ss_pred eEEecCCEEEEEEEccchHHH
Q 021402 182 NYCVGENFLEVDMDIGSSMVA 202 (313)
Q Consensus 182 ~Y~~g~nYlEiDVDI~sS~vA 202 (313)
.|-..++|+|||.|+..|...
T Consensus 70 eWLkk~gf~Eidtd~~~s~~~ 90 (148)
T 3bqa_A 70 DWLKSNGFHEIEADVNDTSLL 90 (148)
T ss_dssp GGSSSCEEEEEEEEHHHHHHH
T ss_pred HHhcCCCcEEEecCcchHHHH
Confidence 555667899999999986443
No 8
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A
Probab=6.94 E-value=1.1e+02 Score=30.38 Aligned_cols=19 Identities=32% Similarity=0.629 Sum_probs=16.5
Q ss_pred eeeecceeeeEEecCCEEEEEE
Q 021402 173 CVIGRALSCNYCVGENFLEVDM 194 (313)
Q Consensus 173 ~lLGr~l~~~Y~~g~nYlEiDV 194 (313)
|+||+. .|..|..|-||+|
T Consensus 460 ~VLg~~---~f~sGrhyWEV~v 478 (602)
T 4b3n_A 460 GVLGSQ---SITSGKHYWEVDV 478 (602)
T ss_dssp CEEESS---CBSSSEEEEEEEC
T ss_pred EeccCC---CCCCEEEEEEEEE
Confidence 789886 7788999999986
No 9
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=6.57 E-value=2.1e+02 Score=21.30 Aligned_cols=33 Identities=6% Similarity=0.048 Sum_probs=19.0
Q ss_pred EecCCEEEEEEEccchHH-HHHHHHHhhcccceEE
Q 021402 184 CVGENFLEVDMDIGSSMV-AKAIVHLAFGYITTLT 217 (313)
Q Consensus 184 ~~g~nYlEiDVDI~sS~v-Ar~il~l~~g~~k~Lv 217 (313)
.|--.|||++++..+..- ...+-.+| ..+.+-|
T Consensus 38 VR~gK~~~l~~~~~~~~~a~~~v~~~~-~LLaNpV 71 (84)
T 2dgb_A 38 VRVGKVLEIVFPAENLLEAEEKAKAMG-ALLANPV 71 (84)
T ss_dssp EEEEEEEEEEEECSSHHHHHHHHHHHH-HHHSCTT
T ss_pred EEEEEEEEEEecCCCHHHHHHHHHHHH-HHhCCcc
Confidence 344568999999665433 33455555 4444433
No 10
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=6.27 E-value=1.2e+02 Score=25.80 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=17.8
Q ss_pred ceeeecceeeeEEecCCEEEEEEE
Q 021402 172 ICVIGRALSCNYCVGENFLEVDMD 195 (313)
Q Consensus 172 ~~lLGr~l~~~Y~~g~nYlEiDVD 195 (313)
+++||+. .|-.|..|-||+|.
T Consensus 39 ~~VLG~~---~ftsGrHYWEVeV~ 59 (186)
T 3uv9_A 39 TGVLGSQ---SITSGKHYWEVDVS 59 (186)
T ss_dssp SCEECSS---CBCSSEEEEEEECT
T ss_pred CcCcCCC---CCCCCCEEEEEEEc
Confidence 3899987 78889999999873
Done!