Query 021402
Match_columns 313
No_of_seqs 136 out of 220
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 03:38:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021402.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021402hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ay0a1 a.43.1.11 (A:3-45) Bif 16.1 7.2 0.00053 25.3 -1.5 25 142-167 9-35 (43)
2 d1l5aa1 c.43.1.2 (A:1-174) Vib 10.0 1.2E+02 0.0086 22.4 3.8 38 112-150 16-56 (174)
3 d1lcla_ b.29.1.3 (A:) Charcot- 9.3 2.9E+02 0.021 20.3 6.0 72 103-195 33-104 (141)
4 d2gala_ b.29.1.3 (A:) Galectin 9.0 3.3E+02 0.024 19.7 6.1 74 102-195 27-100 (133)
5 d2gw6a1 c.52.2.1 (A:2-123) tRN 8.6 83 0.006 24.1 2.3 66 49-126 56-121 (122)
6 d1mg7a1 d.14.1.6 (A:14-187) Ea 6.4 84 0.0061 25.1 1.3 73 136-210 18-95 (174)
7 d2fbea1 b.29.1.22 (A:1-188) Si 6.0 64 0.0047 25.5 0.4 20 172-194 52-71 (188)
8 d2fsra1 d.108.1.1 (A:4-167) Pr 5.9 96 0.007 21.8 1.3 22 220-243 142-163 (164)
9 d2iwgb1 b.29.1.22 (B:4-182) 52 5.5 67 0.0049 25.2 0.2 19 173-194 44-62 (179)
10 d2auaa1 d.166.1.6 (A:2-195) Hy 5.0 92 0.0067 25.6 0.8 21 225-245 169-190 (194)
No 1
>d2ay0a1 a.43.1.11 (A:3-45) Bifunctional protein putA {Escherichia coli [TaxId: 562]}
Probab=16.07 E-value=7.2 Score=25.28 Aligned_cols=25 Identities=40% Similarity=0.733 Sum_probs=20.5
Q ss_pred ChhhhccceeEEeeeccc--hhHHHhhh
Q 021402 142 DDAFRLSRLKLIANIVQG--PWIVKKAV 167 (313)
Q Consensus 142 DD~fRN~RfKLIp~Vv~G--pwiVr~av 167 (313)
||+-| +|+|-++...+- =|++|+|+
T Consensus 9 Dd~~r-~Ri~~lA~~~~RtpHWL~kqAI 35 (43)
T d2ay0a1 9 DDATR-ERIKSAATRIDRTPHWLIKQAI 35 (43)
T ss_dssp CHHHH-HHHHHHHHHTTCCHHHHHHHHH
T ss_pred CHHHH-HHHHHHHHhcCCCHHHHHHHHH
Confidence 78888 899988888774 49999986
No 2
>d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]}
Probab=9.98 E-value=1.2e+02 Score=22.39 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=27.6
Q ss_pred cCCCCceEEEEeeeCCCCCCc---hhHHHHhhCChhhhccce
Q 021402 112 PSKENYSAIAYFVATKPIPEG---SLVDRFLKGDDAFRLSRL 150 (313)
Q Consensus 112 P~~p~~slV~Yf~~~e~~p~~---~Ll~rFl~GDD~fRN~Rf 150 (313)
|..+.||+..++.++.++... +-|.+.+..-+.+| .||
T Consensus 16 p~~~~yni~~~~~i~g~ld~~~l~~A~~~l~~rh~~LR-t~f 56 (174)
T d1l5aa1 16 PHINLDTVAHSLRLTGPLDTTLLLRALHLTVSEIDLFR-ARF 56 (174)
T ss_dssp TTSCCSEEEEEEEEESSCCHHHHHHHHHHHHHTCGGGG-EEE
T ss_pred CCCCeeeccEEEEEcCCCCHHHHHHHHHHHHHhCchhe-EEE
Confidence 777889999999998777554 34555566667777 666
No 3
>d1lcla_ b.29.1.3 (A:) Charcot-Leyden crystal (CLC) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.28 E-value=2.9e+02 Score=20.32 Aligned_cols=72 Identities=14% Similarity=0.170 Sum_probs=45.2
Q ss_pred eEEEEEEEecCCCCceEEEEeeeCCCCCCchhHHHHhhCChhhhccceeEEeeeccchhHHHhhhCCCCceeeecceeee
Q 021402 103 FVWAFNLQVPSKENYSAIAYFVATKPIPEGSLVDRFLKGDDAFRLSRLKLIANIVQGPWIVKKAVGEQAICVIGRALSCN 182 (313)
Q Consensus 103 f~fiVNlqvP~~p~~slV~Yf~~~e~~p~~~Ll~rFl~GDD~fRN~RfKLIp~Vv~GpwiVr~avG~kp~~lLGr~l~~~ 182 (313)
--|.||+|....+.-.+.+.|.+. | . ++ -+...-.+|-|=--.-.+.-| ..-|+.-++.
T Consensus 33 ~~F~inf~~~~~~~~di~lHfn~R-----------f-------~-~~-iV~Ns~~~g~Wg~Eer~~~~P-f~~g~~F~l~ 91 (141)
T d1lcla_ 33 PYLQVDFHTEMKEESDIVFHFQVC-----------F-------G-RR-VVMNSREYGAWKQQVESKNMP-FQDGQEFELS 91 (141)
T ss_dssp CEEEEEEESSSSTTSCEEEEEEEE-----------T-------T-TE-EEEEEEETTEECCCEEECCCC-CCTTCCEEEE
T ss_pred CEEEEEeEeCCCCCCCeEEEEEEc-----------C-------C-Ce-EEEECccCCCcCCceEEcccc-ccCCCeEEEE
Confidence 468899997666666788999873 2 0 11 123334456663211123334 6667877888
Q ss_pred EEecCCEEEEEEE
Q 021402 183 YCVGENFLEVDMD 195 (313)
Q Consensus 183 Y~~g~nYlEiDVD 195 (313)
...++++++|.||
T Consensus 92 I~~~~~~f~V~vN 104 (141)
T d1lcla_ 92 ISVLPDKYQVMVN 104 (141)
T ss_dssp EEECSSEEEEEET
T ss_pred EEECCCEEEEEEC
Confidence 8888888888876
No 4
>d2gala_ b.29.1.3 (A:) Galectin-7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.96 E-value=3.3e+02 Score=19.70 Aligned_cols=74 Identities=11% Similarity=0.104 Sum_probs=45.5
Q ss_pred CeEEEEEEEecCCCCceEEEEeeeCCCCCCchhHHHHhhCChhhhccceeEEeeeccchhHHHhhhCCCCceeeecceee
Q 021402 102 PFVWAFNLQVPSKENYSAIAYFVATKPIPEGSLVDRFLKGDDAFRLSRLKLIANIVQGPWIVKKAVGEQAICVIGRALSC 181 (313)
Q Consensus 102 Pf~fiVNlqvP~~p~~slV~Yf~~~e~~p~~~Ll~rFl~GDD~fRN~RfKLIp~Vv~GpwiVr~avG~kp~~lLGr~l~~ 181 (313)
+-=|.|||+-+..++-.+++.|.+. +.+ +.=-| ..-.+|.|=-..-.+.-| ..-|+.-++
T Consensus 27 ~~~F~inl~~~~~~~~di~~Hfn~R--f~~----------~~IV~-------Ns~~~g~Wg~Eer~~~~P-f~~G~~F~l 86 (133)
T d2gala_ 27 ASRFHVNLLCGEEQGSDAALHFNPR--LDT----------SEVVF-------NSKEQGSWGREERGPGVP-FQRGQPFEV 86 (133)
T ss_dssp CCBEEEEEESSSSTTCCEEEEEEEE--TTT----------TEEEE-------EEEETTEECCCEECSSCC-CCTTCEEEE
T ss_pred CCEEEEEEEeCCCCCCCEEEEEeeE--cCC----------CEEEE-------ECCcCCeECCceEECCCC-CCCCCeeEE
Confidence 4468899998776666788888874 111 11112 223445564222223344 667777777
Q ss_pred eEEecCCEEEEEEE
Q 021402 182 NYCVGENFLEVDMD 195 (313)
Q Consensus 182 ~Y~~g~nYlEiDVD 195 (313)
....+.++|+|-||
T Consensus 87 ~I~~~~~~f~V~vn 100 (133)
T d2gala_ 87 LIIASDDGFKAVVG 100 (133)
T ss_dssp EEEECSSEEEEEET
T ss_pred EEEECCCEEEEEEC
Confidence 88888888888887
No 5
>d2gw6a1 c.52.2.1 (A:2-123) tRNA-splicing endonuclease subunit Sen15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.58 E-value=83 Score=24.05 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=41.0
Q ss_pred CcCCCccccCCCCccceeeeeEeeeCccchhhhcccchhHHHHHHhhcCCCCCCeEEEEEEEecCCCCceEEEEeeeC
Q 021402 49 YLSTKVKIPAGEYILKPLGFDWVKSYTKIGAVLNHQNNRVRKAIEEAFPTGDKPFVWAFNLQVPSKENYSAIAYFVAT 126 (313)
Q Consensus 49 Yl~dk~Kvpa~~~l~~lvgvD~f~s~~ki~hIa~~~~~~v~~~~~~~~~~~~~Pf~fiVNlqvP~~p~~slV~Yf~~~ 126 (313)
||.-|+|.-++..++-++-++.=.+-.++..+-..... .. .+...|..|++-|+=+. |-|.||+++
T Consensus 56 yL~gr~~~~~~~qv~iP~p~~~sls~~~i~~~~~~~~~-----p~---~~~~~~~s~tLai~d~D----STIvYYrmt 121 (122)
T d2gw6a1 56 CLVGTEIEGEGLQTVVPTPITASLSHNRIREILKASRK-----LQ---GDPDLPMSFTLAIVESD----STIVYYKLT 121 (122)
T ss_dssp EEEEESSTTCCCCEEEEEETTCEEEHHHHHHHHHHHHH-----HT---TCSSCCCEEEEEEECTT----SCEEEEEEE
T ss_pred EEEcccccCCCccEEEeeccccccCHHHHHHHHHhccC-----Cc---CCcCccceEEEEEEcCC----CeEEEEEcc
Confidence 67778888888889988888766666666655432110 00 12244555656666555 567788775
No 6
>d1mg7a1 d.14.1.6 (A:14-187) Early switch protein XOL-1, N-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=6.36 E-value=84 Score=25.14 Aligned_cols=73 Identities=15% Similarity=0.104 Sum_probs=31.8
Q ss_pred HHHhh--CChhhhccceeEEeeeccchhHHHhhhCCCCceeeecc-eeeeEEecCCEEEE-EEEccc-hHHHHHHHHHhh
Q 021402 136 DRFLK--GDDAFRLSRLKLIANIVQGPWIVKKAVGEQAICVIGRA-LSCNYCVGENFLEV-DMDIGS-SMVAKAIVHLAF 210 (313)
Q Consensus 136 ~rFl~--GDD~fRN~RfKLIp~Vv~GpwiVr~avG~kp~~lLGr~-l~~~Y~~g~nYlEi-DVDI~s-S~vAr~il~l~~ 210 (313)
-.|++ .|..|||+.+-.-|+||+-=---=.||++ -|+..-. +.-+-.+-.+=-+| +++-+. ..+.+.+++=++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~APHvV~i~~~g~MAVNK--~C~v~s~il~~r~pks~~eH~Idev~~~~hg~it~~iI~DlL 95 (174)
T d1mg7a1 18 LTYMETEDDPNFRNSKLAAAPHTVHMMDSGFLAINR--QCLVKGKAILAREPKSSNEHMIDDLPKHAHDQHTLSILRDFI 95 (174)
T ss_dssp HHTC----------CEEEEEEEEEEETTTEEEEEEE--EEEEEEEEEESSCCSSGGGSEECCCCCCTTHHHHHHHHHHHH
T ss_pred eEeeeccCCCCcccchhccCCeEEeecccceeeeee--eEEEeeeeccccCCCchhhhhHHHhhHhhhcceeHHHHHHHH
Confidence 34554 46799999999999999721111125565 2665332 22111111112455 444444 466666655433
No 7
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.97 E-value=64 Score=25.47 Aligned_cols=20 Identities=35% Similarity=0.949 Sum_probs=17.2
Q ss_pred ceeeecceeeeEEecCCEEEEEE
Q 021402 172 ICVIGRALSCNYCVGENFLEVDM 194 (313)
Q Consensus 172 ~~lLGr~l~~~Y~~g~nYlEiDV 194 (313)
+++||.. .|..|..|-||||
T Consensus 52 ~~VLg~~---~fssGrHYWEV~V 71 (188)
T d2fbea1 52 LCVLGTP---RFTSGRHYWEVDV 71 (188)
T ss_dssp CEEEESC---CBSSSEEEEEEEC
T ss_pred eeccccc---cccCCCEEEEEEe
Confidence 3899986 6888999999987
No 8
>d2fsra1 d.108.1.1 (A:4-167) Probable acetyltranferase Atu2435 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=5.86 E-value=96 Score=21.85 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=16.9
Q ss_pred eeEeeccCCCCccccchhceeeec
Q 021402 220 LAFLLESQTESELPEQILGAFRFS 243 (313)
Q Consensus 220 ~gFvIEG~~eeELPE~lLG~vRl~ 243 (313)
+||.+||..+.+-|+.+ .-|++
T Consensus 142 ~GF~~eg~~~~~~~~~~--~yr~~ 163 (164)
T d2fsra1 142 IGGTLDPLAPRSDPEDL--VYRYH 163 (164)
T ss_dssp TTCEECTTSCCSSTTCE--EEEEC
T ss_pred CCCEEeeeEcccCCCce--EEeeC
Confidence 68999999888877765 45655
No 9
>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.46 E-value=67 Score=25.16 Aligned_cols=19 Identities=32% Similarity=0.733 Sum_probs=16.5
Q ss_pred eeeecceeeeEEecCCEEEEEE
Q 021402 173 CVIGRALSCNYCVGENFLEVDM 194 (313)
Q Consensus 173 ~lLGr~l~~~Y~~g~nYlEiDV 194 (313)
++||.. .|..|..|-||+|
T Consensus 44 ~VLg~~---~f~sG~HYWEVeV 62 (179)
T d2iwgb1 44 MVLGAQ---HFHSGKHYWEVDV 62 (179)
T ss_dssp CEEBSC---CBSSSEEEEEEEC
T ss_pred cccccc---cccCCCEEEEEEE
Confidence 788886 6778999999998
No 10
>d2auaa1 d.166.1.6 (A:2-195) Hypothetical protein BC2332 {Bacillus cereus [TaxId: 1396]}
Probab=5.02 E-value=92 Score=25.59 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=15.1
Q ss_pred ccCCCCccccchh-ceeeeccc
Q 021402 225 ESQTESELPEQIL-GAFRFSEL 245 (313)
Q Consensus 225 EG~~eeELPE~lL-G~vRl~~l 245 (313)
+|.++-||||.|+ |.+|+-.+
T Consensus 169 ~G~~~npl~E~Li~GpI~Vv~i 190 (194)
T d2auaa1 169 KGNIRNELPELLINGEIEVVEI 190 (194)
T ss_dssp HCC--CCSCEEEEEEEEEEEEE
T ss_pred CCCCCCCCceEEecCCEEEEEe
Confidence 3577899999999 88887653
Done!