BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021403
(313 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M9Z2|TPP2_ARATH Probable thylakoidal processing peptidase 2, chloroplastic
OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1
Length = 367
Score = 292 bits (747), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 165/317 (52%), Positives = 214/317 (67%), Gaps = 28/317 (8%)
Query: 1 MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDL-DPPP-- 57
MA+RVT +S YVA+++A SAG R G T RS E RPR H++ D+ D P
Sbjct: 1 MAIRVTFTYSSYVARSIASSAGTRVG--TGDVRSCFETWVRPRFCGHNQIPDIVDKSPGS 58
Query: 58 -NYQPKANYRC-------NTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVF 109
+ P + R +T+A EI +G C SP+++G++SLM T P + M
Sbjct: 59 NTWGPSSGPRARPASSMYSTIAREILEEG-CKSPLVLGMISLMNLTGA---PQFSGMTGL 114
Query: 110 GISPFKAASIIPFLQGSKWLPCNEPGTVP-ESDYVDKGGTT--DKIQFSGSENL-NGVSL 165
GISPFK +S+IPFL+GSKW+PC+ P T+ + VD+GG K++ S+ + NG
Sbjct: 115 GISPFKTSSVIPFLRGSKWMPCSIPATLSTDIAEVDRGGKVCDPKVKLELSDKVSNG--- 171
Query: 166 QLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILA 225
W++KLLN+CS+DAKAAFTA+TVS LF+S LAEP+SIPS SM PTLDVGDR++A
Sbjct: 172 ----GNGWVNKLLNICSEDAKAAFTAVTVSLLFRSALAEPKSIPSTSMLPTLDVGDRVIA 227
Query: 226 EKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVA 285
EKVSYFF++PEVSDIVIF+APPIL E G+S DVFIKRIVA+ GD VEV GKLLVN
Sbjct: 228 EKVSYFFRKPEVSDIVIFKAPPILVEHGYSCADVFIKRIVASEGDWVEVCDGKLLVNDTV 287
Query: 286 QDEDFILEPLAYEMDPV 302
Q EDF+LEP+ YEM+P+
Sbjct: 288 QAEDFVLEPIDYEMEPM 304
>sp|O04348|TPP1_ARATH Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis
thaliana GN=TPP1 PE=2 SV=2
Length = 340
Score = 286 bits (731), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 163/305 (53%), Positives = 208/305 (68%), Gaps = 31/305 (10%)
Query: 1 MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPPPNYQ 60
MA+R+T +S +VA+NL G R G E L RPR F H K D D P +
Sbjct: 1 MAIRITFTYSTHVARNLV---GTRVGPGGYC----FESLVRPRFFSH--KRDFDRSPRNR 51
Query: 61 PKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASII 120
P + Y ++A E+ G+G+ SP++MGL+S++KST G +++M V G+S FKA+SII
Sbjct: 52 PASMY--GSIARELIGEGS-QSPLVMGLISILKSTTGH---ESSTMNVLGVSSFKASSII 105
Query: 121 PFLQGSKWLPCNEPGTVPESDYVDKGGTTDKIQFSGSENLNGVSLQLKTSGSWLSKLLNV 180
PFLQGSKW+ P D VDKGGT E+ NG S W++KLL+V
Sbjct: 106 PFLQGSKWIK-----NPPVIDDVDKGGTVCDDD-DDKESRNGGS-------GWVNKLLSV 152
Query: 181 CSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDI 240
CS+DAKAAFTA+TVS LF+S LAEP+SIPS SM PTLD GDR++AEKVSYFF++PEVSDI
Sbjct: 153 CSEDAKAAFTAVTVSILFRSALAEPKSIPSTSMYPTLDKGDRVMAEKVSYFFRKPEVSDI 212
Query: 241 VIFRAPPIL---QEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAY 297
VIF+APPIL E G+SS DVFIKRIVA+ GD VEV GKL VN + Q+EDF+LEP++Y
Sbjct: 213 VIFKAPPILLEYPEYGYSSNDVFIKRIVASEGDWVEVRDGKLFVNDIVQEEDFVLEPMSY 272
Query: 298 EMDPV 302
EM+P+
Sbjct: 273 EMEPM 277
>sp|Q8H0W1|PLSP1_ARATH Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1
PE=2 SV=2
Length = 291
Score = 174 bits (442), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 79/137 (57%), Positives = 104/137 (75%)
Query: 166 QLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILA 225
+++ + L+ SDDA+ F A+ VS F+ F+AEPR IPS SM PT DVGDR++A
Sbjct: 96 EVEEKNRLFPEWLDFTSDDAQTVFVAIAVSLAFRYFIAEPRYIPSLSMYPTFDVGDRLVA 155
Query: 226 EKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVA 285
EKVSY+F++P +DIVIF++PP+LQE+G++ DVFIKRIVA GD VEVH GKL+VNGVA
Sbjct: 156 EKVSYYFRKPCANDIVIFKSPPVLQEVGYTDADVFIKRIVAKEGDLVEVHNGKLMVNGVA 215
Query: 286 QDEDFILEPLAYEMDPV 302
++E FILEP YEM P+
Sbjct: 216 RNEKFILEPPGYEMTPI 232
>sp|P72660|LEP1_SYNY3 Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=lepB1 PE=3 SV=1
Length = 196
Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 199 KSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGD 258
+ F+AEPR IPS SM PTL+ GDR++ EKVSY F P+V DI++F P +LQ G+ G
Sbjct: 31 RFFVAEPRYIPSDSMLPTLEQGDRLVVEKVSYHFHPPQVGDIIVFHPPELLQVQGYDLGQ 90
Query: 259 VFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDPVVMFP 306
FIKR++A G VEV+ G + +G E++ILEP Y + P V P
Sbjct: 91 AFIKRVIALPGQTVEVNNGIVYRDGQPLQEEYILEPPQYNL-PAVRVP 137
>sp|P73157|LEP2_SYNY3 Probable signal peptidase I-2 OS=Synechocystis sp. (strain PCC 6803
/ Kazusa) GN=lepB2 PE=3 SV=1
Length = 218
Score = 97.8 bits (242), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 179 NVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVS 238
N + K TA+ ++ ++F+AE R IPS+SM PTL + DR++ EK+SY + PE
Sbjct: 19 NTWLELGKTMVTAVILAIGIRTFVAEARYIPSSSMEPTLQINDRLIIEKISYRLRDPERG 78
Query: 239 DIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYE 298
+IV+F L+ F D FIKRI+ GD V V G + VNG DE++I P AYE
Sbjct: 79 EIVVFNPTDALKAKNFH--DAFIKRIIGLPGDEVRVSQGNVYVNGKMLDENYIAAPPAYE 136
Query: 299 MDPV 302
PV
Sbjct: 137 YGPV 140
>sp|Q51876|LEP_PHOLA Signal peptidase I OS=Phormidium laminosum GN=lepB PE=3 SV=1
Length = 203
Score = 94.4 bits (233), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 70/111 (63%)
Query: 191 ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQ 250
++ ++ ++F+AE R IPS SM PTL+V DR++ EK+SY F P DI++F L+
Sbjct: 38 SVVLALGIRTFVAEARYIPSESMLPTLEVNDRLIVEKISYHFNPPRRGDIIVFHPTEALK 97
Query: 251 EIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEMDP 301
+ S + FIKR++ G+ V+V GG++L+NG +E++I P Y+ P
Sbjct: 98 QQNPSLNEAFIKRVIGLPGETVQVTGGRVLINGQPLEENYIQSPPDYQWGP 148
>sp|Q10789|LEP_MYCTU Signal peptidase I OS=Mycobacterium tuberculosis GN=lepB PE=1 SV=1
Length = 294
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/150 (32%), Positives = 70/150 (46%), Gaps = 31/150 (20%)
Query: 188 AFTALTVSFLFKSFLAEPRSIPSASMNPTLD-----VGDRILAEKVSYFFKRPEVSDIVI 242
A A+ + ++ +F+A P IPS SM PTL VGDRI+ +K+SY F P+ D+++
Sbjct: 72 AVIAVVLYYVMLTFVARPYLIPSESMEPTLHGCSTCVGDRIMVDKLSYRFGSPQPGDVIV 131
Query: 243 FRAPP---------------------ILQEIGFSSGDV--FIKRIVATAGDCVEVHGGK- 278
FR PP L IGF D +KR++A G V+
Sbjct: 132 FRGPPSWNVGYKSIRSHNVAVRWVQNALSFIGFVPPDENDLVKRVIAVGGQTVQCRSDTG 191
Query: 279 LLVNGVAQDEDFILEPLAYEMDPVVMFPIL 308
L VNG E + L+P DP + +P L
Sbjct: 192 LTVNGRPLKEPY-LDPATMMADPSI-YPCL 219
>sp|O33021|LEP_MYCLE Probable signal peptidase I OS=Mycobacterium leprae (strain TN)
GN=lepB PE=3 SV=1
Length = 289
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 39/179 (21%)
Query: 151 KIQFSGSENLNGVSLQLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPS 210
++ + +E GVS K S W +L A A+ + ++ +F+A P IPS
Sbjct: 32 EVSETAAEAAIGVSEPKKRSALWEFAIL---------AVIAIGLYYVMLTFVARPYLIPS 82
Query: 211 ASMNPTLD-----VGDRILAEKVSYFFKRPEVSDIVIFRAPP------------------ 247
SM PTL VGDRI+ +K++Y F P+ D+++F+ PP
Sbjct: 83 ESMEPTLHGCSGCVGDRIMVDKITYRFSSPQPGDVIVFKGPPSWNTMYKSIRSNNIVLRS 142
Query: 248 ---ILQEIGFSSGDV--FIKRIVATAGDCVEVHGGK-LLVNGVAQDEDFILEPLAYEMD 300
L +GF D +KR++A G V+ L VNG E + L P+ D
Sbjct: 143 VQNALSFVGFVPPDENDLVKRVIAVGGQTVQCRSDTGLTVNGKPLKEPY-LRPVTMNAD 200
>sp|P26844|LEP_PSEFL Signal peptidase I OS=Pseudomonas fluorescens GN=lepB PE=3 SV=1
Length = 284
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 59/121 (48%), Gaps = 22/121 (18%)
Query: 185 AKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVS------ 238
K+ F L + + +SFL EP IPS SM PTLDVGD IL K SY + P +
Sbjct: 63 GKSFFPVLFIVLVLRSFLVEPFQIPSGSMKPTLDVGDFILVNKFSYGIRLPVIDKKVIEV 122
Query: 239 ------DIVIFRAPPILQEIGFSSGDV-FIKRIVATAGDCVEVHGGK-LLVNGVAQDEDF 290
D+++FR P S +V +IKR+V GD V K L +NG + E
Sbjct: 123 GDPQRGDVMVFRYP--------SDPNVNYIKRVVGLPGDVVRYTSDKRLFINGESVAEKL 174
Query: 291 I 291
+
Sbjct: 175 L 175
>sp|Q9I5G7|LEP_PSEAE Signal peptidase I OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=lepB PE=3 SV=1
Length = 284
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 59/123 (47%), Gaps = 22/123 (17%)
Query: 185 AKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFK----------- 233
K+ F L + + +SFL EP IPS SM PTL+VGD IL K +Y +
Sbjct: 63 GKSFFPVLFIVLVLRSFLVEPFQIPSGSMKPTLEVGDFILVNKFAYGIRLPVLDTKVIPI 122
Query: 234 -RPEVSDIVIFRAPPILQEIGFSSGDV-FIKRIVATAGDCVEVHGGK-LLVNGVAQDEDF 290
P+ D+++FR P S ++ +IKR+V GD V K L VNG E
Sbjct: 123 GDPQRGDVMVFRYP--------SEPNINYIKRVVGLPGDTVRYTKEKRLYVNGELVAEKL 174
Query: 291 ILE 293
+ E
Sbjct: 175 VGE 177
>sp|O67088|LEP_AQUAE Signal peptidase I OS=Aquifex aeolicus (strain VF5) GN=lepB PE=3
SV=1
Length = 256
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 189 FTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPI 248
F + + ++A+ +IPSASM PTL VGD IL K+ Y P D+++F+ P
Sbjct: 9 FLIILAVLFIREYIAQAYTIPSASMEPTLLVGDFILVNKLVYSLSEPMRGDMIVFKYP-- 66
Query: 249 LQEIGFSSGDV-FIKRIVATAGDCVE 273
+ D+ FIKRI+A GD VE
Sbjct: 67 ------KNPDIDFIKRIIARGGDTVE 86
>sp|Q5HHB9|LEP_STAAC Signal peptidase IB OS=Staphylococcus aureus (strain COL) GN=spsB
PE=3 SV=2
Length = 191
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 191 ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQ 250
A + F+ F+ P +I SM+PTL G+R+ V Y E ++V+F A
Sbjct: 15 AFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIVGYKTGGLEKGNVVVFHA----- 69
Query: 251 EIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEM 299
+ D ++KR++ GD VE L VNG QDE ++ L ++
Sbjct: 70 ----NKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQ 114
>sp|P0A069|LEP_STAAW Signal peptidase IB OS=Staphylococcus aureus (strain MW2) GN=spsB
PE=3 SV=1
Length = 191
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 191 ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQ 250
A + F+ F+ P +I SM+PTL G+R+ + Y E ++V+F A
Sbjct: 15 AFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHA----- 69
Query: 251 EIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEM 299
+ D ++KR++ GD VE L VNG QDE ++ L ++
Sbjct: 70 ----NKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQ 114
>sp|P0A070|LEP_STAAU Signal peptidase IB OS=Staphylococcus aureus GN=spsB PE=3 SV=1
Length = 191
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 191 ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQ 250
A + F+ F+ P +I SM+PTL G+R+ + Y E ++V+F A
Sbjct: 15 AFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHA----- 69
Query: 251 EIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEM 299
+ D ++KR++ GD VE L VNG QDE ++ L ++
Sbjct: 70 ----NKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQ 114
>sp|Q6GAW1|LEP_STAAS Signal peptidase IB OS=Staphylococcus aureus (strain MSSA476)
GN=spsB PE=3 SV=1
Length = 191
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 191 ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQ 250
A + F+ F+ P +I SM+PTL G+R+ + Y E ++V+F A
Sbjct: 15 AFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHA----- 69
Query: 251 EIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEM 299
+ D ++KR++ GD VE L VNG QDE ++ L ++
Sbjct: 70 ----NKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQ 114
>sp|P0A068|LEP_STAAN Signal peptidase IB OS=Staphylococcus aureus (strain N315) GN=spsB
PE=1 SV=1
Length = 191
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 191 ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQ 250
A + F+ F+ P +I SM+PTL G+R+ + Y E ++V+F A
Sbjct: 15 AFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHA----- 69
Query: 251 EIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEM 299
+ D ++KR++ GD VE L VNG QDE ++ L ++
Sbjct: 70 ----NKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQ 114
>sp|P0A067|LEP_STAAM Signal peptidase IB OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=spsB PE=3 SV=1
Length = 191
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 191 ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQ 250
A + F+ F+ P +I SM+PTL G+R+ + Y E ++V+F A
Sbjct: 15 AFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHA----- 69
Query: 251 EIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEM 299
+ D ++KR++ GD VE L VNG QDE ++ L ++
Sbjct: 70 ----NKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQ 114
>sp|Q6GIC3|LEP_STAAR Signal peptidase IB OS=Staphylococcus aureus (strain MRSA252)
GN=spsB PE=3 SV=1
Length = 191
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 9/109 (8%)
Query: 191 ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQ 250
A + F+ F+ P +I SM+PTL G+R+ + Y E ++V+F A
Sbjct: 15 AFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIIGYKTGGLEKGNVVVFHA----- 69
Query: 251 EIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILEPLAYEM 299
+ D ++KR++ GD VE L VNG QDE ++ L ++
Sbjct: 70 ----NKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQ 114
>sp|Q8K9R0|LEP_BUCAP Signal peptidase I OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=lepB PE=3 SV=1
Length = 312
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 20/99 (20%)
Query: 187 AAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKR------------ 234
+ F + F+ +SF+ EP IPS SM PTL +GD IL +K SY K
Sbjct: 63 SLFPTFFIVFIIRSFIYEPFQIPSGSMMPTLLIGDFILVKKFSYGIKEPITNKTIIKMNL 122
Query: 235 PEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVE 273
P+ DIV+F+ P + +IKR+V GD ++
Sbjct: 123 PQRGDIVVFKHP--------KNNIDYIKRVVGLPGDKIQ 153
>sp|Q89AM6|LEP_BUCBP Signal peptidase I OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=lepB PE=3 SV=1
Length = 310
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 19/97 (19%)
Query: 189 FTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSY------------FFKRPE 236
F L + F+ ++F+ EP IPS SM PTL GD IL +K SY F P+
Sbjct: 59 FPILIIVFIIRTFICEPFQIPSESMMPTLLPGDFILVKKFSYGIKNPFSNNVIVFINTPK 118
Query: 237 VSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVE 273
DIV+F+ P ++ ++KRIV GD +
Sbjct: 119 RGDIVVFKHPN-------NNAINYVKRIVGLPGDKIN 148
>sp|P41025|LEP2_BACAM Signal peptidase I OS=Bacillus amyloliquefaciens GN=sipS2 PE=3 SV=1
Length = 193
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 166 QLKTSGSWLSKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILA 225
Q TS + + N + KA A+ ++ L + FL EP + +SM PTL G+R+
Sbjct: 5 QKPTSEKSVKRKSNTYWEWGKAIIIAVALALLIRHFLFEPYLVEGSSMYPTLHDGERLFV 64
Query: 226 EKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVA 285
K + E DIVI G +S ++KR++ G+ VE+ L +NG
Sbjct: 65 NKSVNYIGEIERGDIVIIN--------GDTSKVHYVKRLIGKPGETVEMKNDTLYINGKK 116
Query: 286 QDEDFI 291
E ++
Sbjct: 117 IAEPYL 122
>sp|P57347|LEP_BUCAI Signal peptidase I OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=lepB PE=3 SV=1
Length = 314
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 44/90 (48%), Gaps = 19/90 (21%)
Query: 196 FLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFS 255
F+ +SF+ EP IPS SM PTL VGD IL EK SY K P I+I P +
Sbjct: 72 FIIRSFIYEPFQIPSGSMMPTLLVGDFILVEKFSYGIKEPITHKILIRTKKP-------N 124
Query: 256 SGDV------------FIKRIVATAGDCVE 273
GD+ +IKRI+ GD +
Sbjct: 125 RGDIAVFQHPTDHNINYIKRIIGLPGDKIR 154
>sp|P44454|LEP_HAEIN Signal peptidase I OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=lepB PE=3 SV=1
Length = 349
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 31/123 (25%)
Query: 181 CSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFK------- 233
S+ + F L V FL +SFL EP IPS SM TL VGD ++ K +Y K
Sbjct: 84 ASEFLSSLFPVLAVVFLVRSFLFEPFQIPSGSMESTLRVGDFLVVNKYAYGVKDPIFQNT 143
Query: 234 -----RPEVSDIVIFRAPP--------------ILQEIGFSSGDV-----FIKRIVATAG 269
+P+ D+++F+AP + + SS D +IKRIV G
Sbjct: 144 IIAGEKPQRGDVIVFKAPQQALIRTGLGATRAAFAENLALSSKDNMSGVDYIKRIVGKGG 203
Query: 270 DCV 272
D V
Sbjct: 204 DRV 206
>sp|P0A1W2|LEP_SALTY Signal peptidase I OS=Salmonella typhimurium (strain LT2 / SGSC1412
/ ATCC 700720) GN=lepB PE=3 SV=1
Length = 324
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 49/104 (47%), Gaps = 23/104 (22%)
Query: 183 DDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFK--------- 233
+ + F L + + +SFL EP IPS SM PTL +GD IL EK +Y K
Sbjct: 62 ETGASVFPVLAIVLIVRSFLYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLI 121
Query: 234 ---RPEVSDIVIFRAP--PILQEIGFSSGDVFIKRIVATAGDCV 272
P+ DIV+F+ P P L +IKR V GD +
Sbjct: 122 ETGHPKRGDIVVFKYPEDPKLD---------YIKRAVGLPGDKI 156
>sp|P0A1W3|LEP_SALTI Signal peptidase I OS=Salmonella typhi GN=lepB PE=3 SV=1
Length = 324
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 49/104 (47%), Gaps = 23/104 (22%)
Query: 183 DDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFK--------- 233
+ + F L + + +SFL EP IPS SM PTL +GD IL EK +Y K
Sbjct: 62 ETGASVFPVLAIVLIVRSFLYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLI 121
Query: 234 ---RPEVSDIVIFRAP--PILQEIGFSSGDVFIKRIVATAGDCV 272
P+ DIV+F+ P P L +IKR V GD +
Sbjct: 122 ETGHPKRGDIVVFKYPEDPKLD---------YIKRAVGLPGDKI 156
>sp|P00803|LEP_ECOLI Signal peptidase I OS=Escherichia coli (strain K12) GN=lepB PE=1
SV=2
Length = 324
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 48/100 (48%), Gaps = 23/100 (23%)
Query: 187 AAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFK------------R 234
+ F L + + +SF+ EP IPS SM PTL +GD IL EK +Y K
Sbjct: 66 SVFPVLAIVLIVRSFIYEPFQIPSGSMMPTLLIGDFILVEKFAYGIKDPIYQKTLIETGH 125
Query: 235 PEVSDIVIFRAP--PILQEIGFSSGDVFIKRIVATAGDCV 272
P+ DIV+F+ P P L +IKR V GD V
Sbjct: 126 PKRGDIVVFKYPEDPKLD---------YIKRAVGLPGDKV 156
>sp|Q57350|LEPQ_BACNA Signal peptidase I P OS=Bacillus subtilis subsp. natto GN=sipP PE=3
SV=1
Length = 185
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 183 DDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYF---FKRPEVSD 239
D KA AL + FL ++FL EP + SM PTL +R+ K + FKR D
Sbjct: 14 DWIKAILIALILVFLVRTFLFEPYIVQGESMKPTLFNSERLFVNKFVKYTGDFKR---GD 70
Query: 240 IVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILE 293
IV+ G ++KR++ GD +E+ L VNG +E+++ E
Sbjct: 71 IVVLN--------GEEKKTHYVKRLIGLPGDTIEMKNDNLFVNGKRFNEEYLKE 116
>sp|P71013|LEPT_BACSU Signal peptidase I T OS=Bacillus subtilis (strain 168) GN=sipT PE=1
SV=1
Length = 193
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 8/117 (6%)
Query: 175 SKLLNVCSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKR 234
K N + KA A+ ++ L + FL EP + +SM PTL G+R+ K +
Sbjct: 14 KKKTNTYLEWGKAIVIAVLLALLIRHFLFEPYLVEGSSMYPTLHDGERLFVNKTVNYIGE 73
Query: 235 PEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFI 291
+ DIVI G +S ++KR++ G+ V++ L +NG E ++
Sbjct: 74 LKRGDIVIIN--------GETSKIHYVKRLIGKPGETVQMKDDTLYINGKKVAEPYL 122
>sp|P42668|LEP_BACLI Signal peptidase I OS=Bacillus licheniformis GN=lepB PE=3 SV=1
Length = 186
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 8/109 (7%)
Query: 185 AKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFR 244
KA A+ ++ L ++FL EP + SM+PTL G+R+ K + + DIVI
Sbjct: 17 VKAIIIAVVLALLIRAFLFEPYLVEGTSMDPTLHDGERLFVYKTVRYVGEFKRGDIVIID 76
Query: 245 APPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFILE 293
G ++KR++ GD V++ L +NG E ++ E
Sbjct: 77 --------GDEKNVHYVKRLIGLPGDTVQMKDDTLYINGKKVSEPYLSE 117
>sp|P28628|LEPS_BACSU Signal peptidase I S OS=Bacillus subtilis (strain 168) GN=sipS PE=1
SV=1
Length = 184
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 185 AKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFR 244
AKA A+ ++ L ++F+ P + SM PTL +R+ + + DIV+
Sbjct: 16 AKAIVIAVVLALLIRNFIFAPYVVDGDSMYPTLHNRERVFVNMTVKYIGEFDRGDIVVLN 75
Query: 245 APPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFI 291
+ ++KRI+ GD VE+ +L +NG DE ++
Sbjct: 76 GDDVH----------YVKRIIGLPGDTVEMKNDQLYINGKKVDEPYL 112
>sp|P37943|LEPP_BACNA Signal peptidase I P OS=Bacillus subtilis subsp. natto GN=sipP PE=1
SV=1
Length = 186
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 185 AKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFR 244
KA A+ ++ L ++FL EP + SM+PTL +R+ K + + DI+I
Sbjct: 17 GKAIVIAVILALLIRNFLFEPYVVEGKSMDPTLVDSERLFVNKTVKYTGNFKRGDIIILN 76
Query: 245 APPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFI 291
G ++KR++ GD VE+ L +NG E ++
Sbjct: 77 --------GKEKSTHYVKRLIGLPGDTVEMKNDHLFINGNEVKEPYL 115
>sp|O07560|LEPV_BACSU Signal peptidase I V OS=Bacillus subtilis (strain 168) GN=sipV PE=2
SV=1
Length = 168
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 207 SIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVA 266
+ SMNPT G+ +L K S+ FK DIV+F+ P V IKR++
Sbjct: 29 KVEGVSMNPTFQEGNELLVNKFSHRFKTIHRFDIVLFKGP---------DHKVLIKRVIG 79
Query: 267 TAGDCVEVHGGKLLVNGVAQDEDFI 291
G+ ++ +L VNG E F+
Sbjct: 80 LPGETIKYKDDQLYVNGKQVAEPFL 104
>sp|P41026|LEP1_BACAM Signal peptidase I OS=Bacillus amyloliquefaciens GN=sipA PE=3 SV=1
Length = 185
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 10/109 (9%)
Query: 183 DDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVI 242
D AKA A+ ++ L ++FL P + SM PTL +RI + + IV+
Sbjct: 16 DWAKAIIIAVVLAVLIRNFLFAPYVVDGESMEPTLHDRERIFVNMTVKYISDFKRGQIVV 75
Query: 243 FRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFI 291
+ ++KRI+ GD V++ +L +NG E ++
Sbjct: 76 LNG----------ENEHYVKRIIGLPGDTVQMKNDQLYINGKKVSEPYL 114
>sp|P41027|LEP_BACCL Signal peptidase I OS=Bacillus caldolyticus GN=lepB PE=3 SV=1
Length = 182
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 9/103 (8%)
Query: 189 FTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPI 248
F A+ V + F+ + SM PTL+ G+ ++ K+SY DI++F A
Sbjct: 15 FVAVCVVATLRLFVFSNYVVEGKSMMPTLESGNLLIVNKLSYDIGPIRRFDIIVFHA--- 71
Query: 249 LQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVNGVAQDEDFI 291
+ + ++KR++ GD + L VNG DE ++
Sbjct: 72 ------NKKEDYVKRVIGLPGDRIAYKNDILYVNGKKVDEPYL 108
>sp|A8GM78|LEP_RICAH Signal peptidase I OS=Rickettsia akari (strain Hartford) GN=lepB
PE=3 SV=1
Length = 266
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 27/112 (24%)
Query: 191 ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSY-------------------- 230
+ ++ L + + EP ++P+ SM T+ D I + K SY
Sbjct: 24 VICIALLIRILIMEPFTVPTGSMKATILENDYIFSTKYSYGYSNYSLSFFDFIPLFKGRI 83
Query: 231 FFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVN 282
F + PE DIV+FR P + +IKR++ GD +++ + +N
Sbjct: 84 FAREPERGDIVVFRPPNDMNV-------RYIKRLIGLPGDKIQLIDDVIYIN 128
>sp|Q4UKA7|LEP_RICFE Signal peptidase I OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=lepB PE=3 SV=1
Length = 266
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 27/112 (24%)
Query: 191 ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSY-------------------- 230
+ ++ L + + EP ++P+ SM T+ D I + K SY
Sbjct: 24 VICIALLIRILIMEPFTVPTGSMKATILENDYIFSTKYSYGYSNYSLSFFDFIPLFKGRI 83
Query: 231 FFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVN 282
F + PE DIV+FR P + +IKR++ GD +++ + +N
Sbjct: 84 FAREPERGDIVVFRPPNDMNV-------RYIKRLIGLPGDKIQLIDDVIYIN 128
>sp|Q1RHA1|LEP_RICBR Signal peptidase I OS=Rickettsia bellii (strain RML369-C) GN=lepB
PE=3 SV=1
Length = 291
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 27/122 (22%)
Query: 181 CSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSY---------- 230
+ + K+ + ++ + + + E +P+ SM T+ DRI K SY
Sbjct: 39 TAQEWKSFILVVVIALMIRILIIESFVVPTGSMKATILENDRIFGTKYSYGYSNYSLSFF 98
Query: 231 ----------FFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLL 280
F + PE DI+IFR P + +IKR++ GD V++ +
Sbjct: 99 DFIHLFKGRIFARTPERGDIIIFRPPHEMNT-------RYIKRLIGLPGDKVQLIDDVIY 151
Query: 281 VN 282
+N
Sbjct: 152 IN 153
>sp|A8GYE1|LEP_RICB8 Signal peptidase I OS=Rickettsia bellii (strain OSU 85-389) GN=lepB
PE=3 SV=1
Length = 289
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 27/122 (22%)
Query: 181 CSDDAKAAFTALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSY---------- 230
+ + K+ + ++ + + + E +P+ SM T+ DRI K SY
Sbjct: 37 TAQEWKSFILVVVIALMIRILIIESFVVPTGSMKATILENDRIFGTKYSYGYSNYSLSFF 96
Query: 231 ----------FFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLL 280
F + PE DI+IFR P + +IKR++ GD V++ +
Sbjct: 97 DFIHLFKGRIFARTPERGDIIIFRPPHEMNT-------RYIKRLIGLPGDKVQLIDDVIY 149
Query: 281 VN 282
+N
Sbjct: 150 IN 151
>sp|A8F0M1|LEP_RICM5 Signal peptidase I OS=Rickettsia massiliae (strain Mtu5) GN=lepB
PE=3 SV=2
Length = 266
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 27/112 (24%)
Query: 191 ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSY-------------------- 230
+ ++ L + + EP ++P+ SM T+ D I + K SY
Sbjct: 24 VICIALLIRILIMEPFTVPTGSMKATILENDYIFSTKYSYGYSNYSLSFFDFIPLFKGRI 83
Query: 231 FFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVN 282
F + PE DIV+FR P + +IKR++ GD +++ + +N
Sbjct: 84 FAREPERGDIVVFRPPHDMSV-------RYIKRLIGLPGDKIQLIDDVIYIN 128
>sp|Q6GIC4|LEPH_STAAR Inactive signal peptidase IA OS=Staphylococcus aureus (strain
MRSA252) GN=spsA PE=3 SV=1
Length = 174
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 199 KSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGD 258
++F+ IP+ M+PTL+ GDR++ K+ F + DI+ +R +
Sbjct: 22 QTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYR----------RGNE 71
Query: 259 VFIKRIVATAGDCVEVHGGKL 279
++ RI+A G + G+L
Sbjct: 72 IYTSRIIAKPGQSMAFRQGQL 92
>sp|P0A065|LEPH_STAAW Inactive signal peptidase IA OS=Staphylococcus aureus (strain MW2)
GN=spsA PE=3 SV=1
Length = 174
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 199 KSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGD 258
++F+ IP+ M+PTL+ GDR++ K+ F + DI+ +R +
Sbjct: 22 QTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYR----------RGNE 71
Query: 259 VFIKRIVATAGDCVEVHGGKL 279
++ RI+A G + G+L
Sbjct: 72 IYTSRIIAKPGQSMAFRQGQL 92
>sp|P0A066|LEPH_STAAU Inactive signal peptidase IA OS=Staphylococcus aureus GN=spsA PE=3
SV=1
Length = 174
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 199 KSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGD 258
++F+ IP+ M+PTL+ GDR++ K+ F + DI+ +R +
Sbjct: 22 QTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYR----------RGNE 71
Query: 259 VFIKRIVATAGDCVEVHGGKL 279
++ RI+A G + G+L
Sbjct: 72 IYTSRIIAKPGQSMAFRQGQL 92
>sp|Q6GAW2|LEPH_STAAS Inactive signal peptidase IA OS=Staphylococcus aureus (strain
MSSA476) GN=spsA PE=3 SV=1
Length = 174
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 199 KSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGD 258
++F+ IP+ M+PTL+ GDR++ K+ F + DI+ +R +
Sbjct: 22 QTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYR----------RGNE 71
Query: 259 VFIKRIVATAGDCVEVHGGKL 279
++ RI+A G + G+L
Sbjct: 72 IYTSRIIAKPGQSMAFRQGQL 92
>sp|P0A064|LEPH_STAAN Inactive signal peptidase IA OS=Staphylococcus aureus (strain N315)
GN=spsA PE=3 SV=1
Length = 174
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 199 KSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGD 258
++F+ IP+ M+PTL+ GDR++ K+ F + DI+ +R +
Sbjct: 22 QTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYR----------RGNE 71
Query: 259 VFIKRIVATAGDCVEVHGGKL 279
++ RI+A G + G+L
Sbjct: 72 IYTSRIIAKPGQSMAFRQGQL 92
>sp|P0A063|LEPH_STAAM Inactive signal peptidase IA OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=spsA PE=3 SV=1
Length = 174
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 199 KSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGD 258
++F+ IP+ M+PTL+ GDR++ K+ F + DI+ +R +
Sbjct: 22 QTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYR----------RGNE 71
Query: 259 VFIKRIVATAGDCVEVHGGKL 279
++ RI+A G + G+L
Sbjct: 72 IYTSRIIAKPGQSMAFRQGQL 92
>sp|Q5HHC0|LEPH_STAAC Inactive signal peptidase IA OS=Staphylococcus aureus (strain COL)
GN=spsA PE=3 SV=1
Length = 174
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 199 KSFLAEPRSIPSASMNPTLDVGDRILAEKVSYFFKRPEVSDIVIFRAPPILQEIGFSSGD 258
++F+ IP+ M+PTL+ GDR++ K+ F + DI+ +R +
Sbjct: 22 QTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYR----------RGNE 71
Query: 259 VFIKRIVATAGDCVEVHGGKL 279
++ RI+A G + G+L
Sbjct: 72 IYTSRIIAKPGQSMAFRQGQL 92
>sp|Q8L2J7|LEP_RICTY Signal peptidase I OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=lepB PE=1 SV=1
Length = 264
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 28/117 (23%)
Query: 187 AAFT-ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSY--------------- 230
A+FT + ++ + + + EP ++P+ SM T+ D I + K SY
Sbjct: 17 ASFTFVICIALVIRILIMEPFTVPTGSMKATILENDYIFSTKYSYGYSNYSLSFFDFIPL 76
Query: 231 -----FFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVN 282
F + PE DIV+FR P + +IKR++ GD +++ + +N
Sbjct: 77 FKGRVFAREPERGDIVVFRPPNDMSV-------RYIKRLIGLPGDKIQLIDDVIYIN 126
>sp|A8GQT7|LEP_RICRS Signal peptidase I OS=Rickettsia rickettsii (strain Sheila Smith)
GN=lepB PE=1 SV=1
Length = 266
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 27/112 (24%)
Query: 191 ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSY-------------------- 230
+ ++ L + + EP ++P+ SM T+ D I + K SY
Sbjct: 24 VICIALLIRILIMEPFTVPTGSMKATILENDYIFSTKYSYGYSNYSLSFFDFIPLFKGRI 83
Query: 231 FFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVN 282
F + P+ DIV+FR P + +IKR++ GD +++ + +N
Sbjct: 84 FAREPDRGDIVVFRPPNDMSV-------RYIKRLIGLPGDKIQLIDDVIYIN 128
>sp|Q92JB1|LEP_RICCN Signal peptidase I OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=lepB PE=3 SV=1
Length = 266
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 27/112 (24%)
Query: 191 ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSY-------------------- 230
+ ++ L + + EP ++P+ SM T+ D I + K SY
Sbjct: 24 VICIALLIRILIMEPFNVPTGSMKATILENDYIFSTKYSYGYSNYSLSFFDFIPLFKGRI 83
Query: 231 FFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVN 282
F + P+ DIV+FR P + +IKR++ GD +++ + +N
Sbjct: 84 FAREPDRGDIVVFRPPNDMSV-------RYIKRLIGLPGDKIQLIDDVIYIN 128
>sp|Q9ZE32|LEP_RICPR Signal peptidase I OS=Rickettsia prowazekii (strain Madrid E)
GN=lepB PE=3 SV=1
Length = 264
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 27/112 (24%)
Query: 191 ALTVSFLFKSFLAEPRSIPSASMNPTLDVGDRILAEKVSY-------------------- 230
+ ++ + + + EP ++P+ SM T+ D I + K SY
Sbjct: 22 VICIALVIRILIMEPFTVPTGSMKATILENDYIFSTKYSYGYSNYSLSFFDFIHLFKGRV 81
Query: 231 FFKRPEVSDIVIFRAPPILQEIGFSSGDVFIKRIVATAGDCVEVHGGKLLVN 282
F + PE DIV+FR P + +IKR++ GD +++ + +N
Sbjct: 82 FAREPERGDIVVFRPPNDMSV-------RYIKRLIGLPGDKIQLIDDVIYIN 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,141,404
Number of Sequences: 539616
Number of extensions: 4808897
Number of successful extensions: 10076
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 9994
Number of HSP's gapped (non-prelim): 55
length of query: 313
length of database: 191,569,459
effective HSP length: 117
effective length of query: 196
effective length of database: 128,434,387
effective search space: 25173139852
effective search space used: 25173139852
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)