Query 021404
Match_columns 312
No_of_seqs 294 out of 1976
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 03:39:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021404.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021404hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.6 9.1E-16 3.1E-20 143.5 5.7 122 21-145 123-276 (367)
2 2lnd_A De novo designed protei 28.3 1E+02 0.0035 22.2 4.9 43 92-138 37-79 (112)
3 1unk_A Colicin E7; immunity pr 22.5 41 0.0014 24.6 1.9 49 93-141 35-85 (87)
4 1fr2_A Colicin E9 immunity pro 19.0 49 0.0017 24.0 1.7 49 93-141 34-84 (86)
5 3p8k_A Hydrolase, carbon-nitro 18.1 1.3E+02 0.0044 26.1 4.6 46 93-140 40-99 (281)
6 1gxg_A Colicin E8 immunity pro 18.1 34 0.0012 24.8 0.7 49 93-141 33-83 (85)
7 1f89_A 32.5 kDa protein YLR351 15.8 1.6E+02 0.0056 25.3 4.8 13 107-119 44-56 (291)
8 2e11_A Hydrolase; dimethylarse 15.3 1.6E+02 0.0055 25.0 4.5 34 107-140 34-80 (266)
9 1vli_A Spore coat polysacchari 15.2 3E+02 0.01 25.5 6.5 62 57-121 136-197 (385)
10 2w1v_A Nitrilase-2, nitrilase 12.5 1.5E+02 0.0051 25.4 3.5 34 107-140 34-81 (276)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.58 E-value=9.1e-16 Score=143.48 Aligned_cols=122 Identities=16% Similarity=0.219 Sum_probs=92.3
Q ss_pred CCCCCCCCcEEEEeCCCCchhHHHHHHHHHhcCC--CCcEEEEEcccccccChH---HHHHHHcCcEEeecCCc------
Q 021404 21 IRVFRVEERVLLMANHRTEVDWMYVWDLALRKGC--LGYIKYILKSSLMKLPVF---GWGFHILEFISVERNWE------ 89 (312)
Q Consensus 21 ~~~l~~~~~~lii~NH~S~~D~l~l~~~~~~~~~--~~~~~~v~K~~l~~~P~~---Gw~~~~~~~I~v~R~~~------ 89 (312)
.+.++.++++|+++||||.+|.+++..++.+.+. ..++.||+|++|.+.|++ +++ ..+++|+..|.-.
T Consensus 123 ~E~l~~~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~Pl~~Pfs~g-~~l~cI~~kk~id~~p~l~ 201 (367)
T 1iuq_A 123 EEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIG-RNLICVYSKKHMFDIPELT 201 (367)
T ss_dssp HHHHHTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHT-SEEEECCCGGGTTSSGGGH
T ss_pred HhhccCCCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhhcCccccchhhh-hheeeEEecccCCCcchhh
Confidence 5566688999999999999999999887742110 126899999999988877 444 3356777644332
Q ss_pred -----ccHHHHHHHHHhccCCCCCceEEEecCCCCCCchh----h------HHHH----HHHHhcCCC--eeeEEEe
Q 021404 90 -----IDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEK----R------NRSQ----KFAADVGLP--VLTNVLL 145 (312)
Q Consensus 90 -----~d~~~i~~~l~~l~~~~~~~~llIFPEGTr~~~~~----~------~~s~----~~A~~~glP--vl~~~L~ 145 (312)
.+.++++++.+.+++ .|.+++|||||||..++. . .++. .+|.+.|+| ++|.++.
T Consensus 202 r~~~r~n~ksl~~~~~~Lk~--GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg~P~hIvPvaI~ 276 (367)
T 1iuq_A 202 ETKRKANTRSLKEMALLLRG--GSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALL 276 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--CCCEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEE
T ss_pred hhhhHHHHHHHHHHHHHHHc--CCeEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcCCCceEEEEEEE
Confidence 346677777777772 477999999999998632 2 4566 999999999 9999996
No 2
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=28.29 E-value=1e+02 Score=22.16 Aligned_cols=43 Identities=19% Similarity=0.324 Sum_probs=31.1
Q ss_pred HHHHHHHHHhccCCCCCceEEEecCCCCCCchhhHHHHHHHHhcCCC
Q 021404 92 EHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRNRSQKFAADVGLP 138 (312)
Q Consensus 92 ~~~i~~~l~~l~~~~~~~~llIFPEGTr~~~~~~~~s~~~A~~~glP 138 (312)
.+.+++.++.+++ +|..+++|-.|..- ......+.-|++.|+.
T Consensus 37 sqdirdiiksmkd--ngkplvvfvngasq--ndvnefqneakkegvs 79 (112)
T 2lnd_A 37 SQDIRDIIKSMKD--NGKPLVVFVNGASQ--NDVNEFQNEAKKEGVS 79 (112)
T ss_dssp HHHHHHHHHHHTT--CCSCEEEEECSCCH--HHHHHHHHHHHHHTCE
T ss_pred hhhHHHHHHHHHh--cCCeEEEEecCccc--ccHHHHHHHHHhcCcc
Confidence 4678888888885 88899999999853 3334555667777754
No 3
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=22.48 E-value=41 Score=24.56 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=34.1
Q ss_pred HHHHHHHHhccCCCCCceEEEecCC-CCCCchh-hHHHHHHHHhcCCCeee
Q 021404 93 HVMRQMLSTFRNPNDPLWLTIFPEG-TDFTEEK-RNRSQKFAADVGLPVLT 141 (312)
Q Consensus 93 ~~i~~~l~~l~~~~~~~~llIFPEG-Tr~~~~~-~~~s~~~A~~~glPvl~ 141 (312)
..+-.....+...++|.-|+.+||. -.-+++. .+...++-+++|+|-++
T Consensus 35 d~lv~hF~~iteHP~gsDLIfYP~~~~edsPEgIv~~iKeWRa~nG~pgFK 85 (87)
T 1unk_A 35 DVLLEHFVKITEHPDGTDLIYYPSDNRDDSPEGIVKEIKEWRAANGKPGFK 85 (87)
T ss_dssp HHHHHHHHHHHCCTTTTHHHHSCCSSCCCSHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHhcCCCCCCCeeeeCCCCCCCCHHHHHHHHHHHHHHcCCcccC
Confidence 4444555666678999999999984 4444444 36677888899999553
No 4
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=18.95 E-value=49 Score=24.04 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=33.4
Q ss_pred HHHHHHHHhccCCCCCceEEEecC-CCCCCchh-hHHHHHHHHhcCCCeee
Q 021404 93 HVMRQMLSTFRNPNDPLWLTIFPE-GTDFTEEK-RNRSQKFAADVGLPVLT 141 (312)
Q Consensus 93 ~~i~~~l~~l~~~~~~~~llIFPE-GTr~~~~~-~~~s~~~A~~~glPvl~ 141 (312)
..+-..+..+...++|.-|+.+|| |-..+++. .....++-.++|+|-++
T Consensus 34 d~ll~~f~~~teHP~gSDLIfyP~~~~e~spE~Iv~~ik~wRa~~G~pgFK 84 (86)
T 1fr2_A 34 VKLVTHFAEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRAANGKSGFK 84 (86)
T ss_dssp HHHHHHHHHHHCCTTTTHHHHSCCTTCCCSHHHHHHHHHHHHHHTTCCCCB
T ss_pred HHHHHHHHHhcCCCCcCceeecCCCCCCCCHHHHHHHHHHHHHHcCCcccC
Confidence 344444555556788999999997 44444444 36678888899999554
No 5
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=18.11 E-value=1.3e+02 Score=26.09 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=27.3
Q ss_pred HHHHHHHHhccCCCCCceEEEecCCCCC--Cc------------hhhHHHHHHHHhcCCCee
Q 021404 93 HVMRQMLSTFRNPNDPLWLTIFPEGTDF--TE------------EKRNRSQKFAADVGLPVL 140 (312)
Q Consensus 93 ~~i~~~l~~l~~~~~~~~llIFPEGTr~--~~------------~~~~~s~~~A~~~glPvl 140 (312)
+.+.+.++... ..+--|++|||-... .. .......++|++.|+.++
T Consensus 40 ~~~~~~i~~A~--~~gadlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~~~i~iv 99 (281)
T 3p8k_A 40 TQITQWFEKNM--NAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIV 99 (281)
T ss_dssp HHHHHHHHHHC--CTTCCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHH--hCCCcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhhCCeEEE
Confidence 34444554443 356789999997542 11 112445678888887654
No 6
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=18.08 E-value=34 Score=24.83 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=32.6
Q ss_pred HHHHHHHHhccCCCCCceEEEecC-CCCCCchh-hHHHHHHHHhcCCCeee
Q 021404 93 HVMRQMLSTFRNPNDPLWLTIFPE-GTDFTEEK-RNRSQKFAADVGLPVLT 141 (312)
Q Consensus 93 ~~i~~~l~~l~~~~~~~~llIFPE-GTr~~~~~-~~~s~~~A~~~glPvl~ 141 (312)
..+-..+..+...++|.-|+.+|| |-..+++. .....++-.++|+|-++
T Consensus 33 d~ll~~f~~~teHP~gSDLIfyP~~~~e~spE~Iv~~ik~wRa~~g~p~Fk 83 (85)
T 1gxg_A 33 DDNLEHFISVTEHPSGSDLIYYPEGNNDGSPEAVIKEIKEWRAANGKSGFK 83 (85)
T ss_dssp HHHHHHHHHTTCCTTTTHHHHSCCTTCCSSHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHHHhcCCCCcCceeecCCCCCCCCHHHHHHHHHHHHHHcCCcccC
Confidence 334444455555788889999997 34444444 36677888899999543
No 7
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=15.78 E-value=1.6e+02 Score=25.31 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=10.6
Q ss_pred CCceEEEecCCCC
Q 021404 107 DPLWLTIFPEGTD 119 (312)
Q Consensus 107 ~~~~llIFPEGTr 119 (312)
.+--|++|||...
T Consensus 44 ~gadlvv~PE~~~ 56 (291)
T 1f89_A 44 PDTKLVVLPECFN 56 (291)
T ss_dssp TTEEEEECCTTTT
T ss_pred CCCeEEEcCCCcc
Confidence 5678999999765
No 8
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=15.29 E-value=1.6e+02 Score=24.97 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=21.4
Q ss_pred CCceEEEecCCCCC--Cc-----------hhhHHHHHHHHhcCCCee
Q 021404 107 DPLWLTIFPEGTDF--TE-----------EKRNRSQKFAADVGLPVL 140 (312)
Q Consensus 107 ~~~~llIFPEGTr~--~~-----------~~~~~s~~~A~~~glPvl 140 (312)
.+--|++|||.... .. .....-.++|++.|+.++
T Consensus 34 ~gadlvv~PE~~~~gy~~~~~~~a~~~~~~~~~~l~~~a~~~~~~iv 80 (266)
T 2e11_A 34 GQSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAARLGAAIT 80 (266)
T ss_dssp TTCSEEECCTTTTTCSCSGGGGGCEETTSHHHHHHHHHHHHHTSEEE
T ss_pred CCCCEEECCCCccccCChhHHHhhccCCCHHHHHHHHHHHHhCCEEE
Confidence 56679999996542 11 112344677888887764
No 9
>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=15.17 E-value=3e+02 Score=25.49 Aligned_cols=62 Identities=8% Similarity=-0.002 Sum_probs=44.9
Q ss_pred cEEEEEcccccccChHHHHHHHcCcEEeecCCcccHHHHHHHHHhccCCCCCceEEEecCCCCCC
Q 021404 57 YIKYILKSSLMKLPVFGWGFHILEFISVERNWEIDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFT 121 (312)
Q Consensus 57 ~~~~v~K~~l~~~P~~Gw~~~~~~~I~v~R~~~~d~~~i~~~l~~l~~~~~~~~llIFPEGTr~~ 121 (312)
++.=++-.++.+.|++..+.+.-.-|.++|... +.+.+..+++.+.+.++...+++ |+|+.-
T Consensus 136 d~~KIgS~~~~N~pLL~~va~~gKPViLStGma-Tl~Ei~~Ave~i~~~Gn~~iiLl--hc~s~Y 197 (385)
T 1vli_A 136 SAFKIASYEINHLPLLKYVARLNRPMIFSTAGA-EISDVHEAWRTIRAEGNNQIAIM--HCVAKY 197 (385)
T ss_dssp SCEEECGGGTTCHHHHHHHHTTCSCEEEECTTC-CHHHHHHHHHHHHTTTCCCEEEE--EECSSS
T ss_pred CEEEECcccccCHHHHHHHHhcCCeEEEECCCC-CHHHHHHHHHHHHHCCCCcEEEE--eccCCC
Confidence 344456677888899999888889999999885 78888888888886444333333 566653
No 10
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=12.47 E-value=1.5e+02 Score=25.39 Aligned_cols=34 Identities=12% Similarity=0.184 Sum_probs=21.1
Q ss_pred CCceEEEecCCCCCC--c------------hhhHHHHHHHHhcCCCee
Q 021404 107 DPLWLTIFPEGTDFT--E------------EKRNRSQKFAADVGLPVL 140 (312)
Q Consensus 107 ~~~~llIFPEGTr~~--~------------~~~~~s~~~A~~~glPvl 140 (312)
.+--|++|||..... . .....-.++|++.++.++
T Consensus 34 ~gadlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv 81 (276)
T 2w1v_A 34 QGANIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKESSIYLI 81 (276)
T ss_dssp TTCSEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHHHHTSEEE
T ss_pred CCCCEEEcCCCcccCCCHHHHHHHhccCCCHHHHHHHHHHHHcCeEEE
Confidence 456799999976421 1 112344677888887654
Done!