RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 021404
(312 letters)
>gnl|CDD|178126 PLN02510, PLN02510, probable 1-acyl-sn-glycerol-3-phosphate
acyltransferase.
Length = 374
Score = 517 bits (1334), Expect = 0.0
Identities = 197/277 (71%), Positives = 232/277 (83%)
Query: 27 EERVLLMANHRTEVDWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVER 86
EERVLL+ANHRTEVDWMY+WDLALRKGCLGYIKY+LKSSLMKLPVFGW FHI EFI VER
Sbjct: 91 EERVLLIANHRTEVDWMYLWDLALRKGCLGYIKYVLKSSLMKLPVFGWAFHIFEFIPVER 150
Query: 87 NWEIDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRNRSQKFAADVGLPVLTNVLLP 146
WE+DE +RQMLS+F++P DPLWL +FPEGTD+TE K RSQKFAA+ GLP+L NVLLP
Sbjct: 151 KWEVDEPNIRQMLSSFKDPRDPLWLALFPEGTDYTEAKCQRSQKFAAEHGLPILNNVLLP 210
Query: 147 KTRGFCLCLETLRNTLDAVYDMTIAYKNPCPSFMDNVFGVDPSEVHIHVRRIPVKEIPAS 206
KT+GF CL+ LR +LDAVYD+TI YK+ CPSF+DNVFG+DPSEVHIH+RRIP+K+IP S
Sbjct: 211 KTKGFVSCLQELRCSLDAVYDVTIGYKHRCPSFLDNVFGIDPSEVHIHIRRIPLKQIPTS 270
Query: 207 ETDAAAWLMDAFQLKDQLLDKFNAQGHFPNQCQENELSTLKCLVNFIVVISLTAIFTYLT 266
E + +AWLMD FQLKDQLL F AQGHFPN+ E ELSTLKCL NF+ VI+LT +FTYLT
Sbjct: 271 EDEVSAWLMDRFQLKDQLLSDFYAQGHFPNEGTEGELSTLKCLANFLAVIALTTVFTYLT 330
Query: 267 LFSSIWYKIYVGLACTSLASVTYFNIHPMLVVGFSKA 303
LFSS+W+KIYV L+C L S T+FN P ++ +
Sbjct: 331 LFSSVWFKIYVSLSCAYLTSATHFNWRPPPLIESLEN 367
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 230 bits (589), Expect = 5e-76
Identities = 89/171 (52%), Positives = 120/171 (70%), Gaps = 1/171 (0%)
Query: 27 EERVLLMANHRTEVDWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVER 86
+ER L+++NHR+EVDW+ +W LA R G LG +K +LK SL P+ GWG+ + EFI ++R
Sbjct: 23 KERALIISNHRSEVDWLVLWMLADRFGRLGRLKIVLKDSLKYPPLGGWGWQLGEFIFLKR 82
Query: 87 NWEIDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRNRSQKFAADVGLPVLTNVLLP 146
WE DE +++ L ++ +P WL IFPEGT FTEEK+ RSQ+FA GLP L +VLLP
Sbjct: 83 KWEKDEKTIKRQLKRLKDSPEPFWLLIFPEGTRFTEEKKERSQEFAEKNGLPPLKHVLLP 142
Query: 147 KTRGFCLCLETLRNTLDAVYDMTIAYKNPCP-SFMDNVFGVDPSEVHIHVR 196
+T+GF LETLR+ +DAVYD+TIAY + P S + G P EVH+HVR
Sbjct: 143 RTKGFVAILETLRDAVDAVYDVTIAYPDGKPPSEQRLLLGGKPREVHVHVR 193
>gnl|CDD|178006 PLN02380, PLN02380, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 376
Score = 206 bits (525), Expect = 4e-64
Identities = 94/268 (35%), Positives = 144/268 (53%), Gaps = 11/268 (4%)
Query: 28 ERVLLMANHRTEVDWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVERN 87
E L+++NHR+++DW+ W LA R GCLG ++K S LPV GW E++ +ER+
Sbjct: 84 EHALVISNHRSDIDWLVGWILAQRSGCLGSALAVMKKSSKFLPVIGWSMWFSEYVFLERS 143
Query: 88 WEIDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRNRSQKFAADVGLPVLTNVLLPK 147
W DE+ ++ ++ P WL +F EGT FT+ K +Q++AA GLPV NVL+P+
Sbjct: 144 WAKDENTLKSGFQRLKDFPRPFWLALFVEGTRFTQAKLLAAQEYAASRGLPVPRNVLIPR 203
Query: 148 TRGFCLCLETLRNTLDAVYDMTIAYKN--PCPSFMDNVFGVDPSEVHIHVRRIPVKEIPA 205
T+GF + +R+ + A+YD+T+A P P+ M +F S VH+H++R +KE+P
Sbjct: 204 TKGFVSAVSNMRSFVPAIYDVTVAVPKGQPAPT-MLRIFRGQSSVVHVHIKRHSMKELPE 262
Query: 206 SETDAAAWLMDAFQLKDQLLDKFNAQGHFPNQCQENELSTLKCLVNFIVVISLTAIFTYL 265
++ A W D F KD LLDK A+ F +Q ++ K L IVVIS +
Sbjct: 263 TDDGIAQWCKDVFVAKDALLDKHFAEDTFGDQEYQDIGRPKKSL---IVVISWACLLILG 319
Query: 266 TLFSSIWYKIY-----VGLACTSLASVT 288
+ W + + L VT
Sbjct: 320 AIKFLQWLSLLSSWKGIASLAAGLVIVT 347
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 88.6 bits (220), Expect = 6e-22
Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 6/116 (5%)
Query: 30 VLLMANHRTEVDWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVERNWE 89
L++ANH++ +D + + L RK G ++++ K L +P+ GW +L I ++R+
Sbjct: 1 ALVVANHQSFLDPLVLSALLPRKL--GRVRFVAKKELFYVPLLGWLLRLLGAIFIDRSNG 58
Query: 90 -IDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRNRSQKFAADVGLPVLTNVL 144
+R+ + + + WL IFPEGT K +K AA + L ++
Sbjct: 59 RKARAALREAVELLK---EGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIV 111
>gnl|CDD|237584 PRK14014, PRK14014, putative acyltransferase; Provisional.
Length = 301
Score = 73.0 bits (180), Expect = 8e-15
Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 38/225 (16%)
Query: 31 LLMANHRTEVDWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEF--------I 82
L+++NH++ VD + + + R+ + +K+ LK L+ +P G + L+F
Sbjct: 90 LVISNHQSWVDILVLQYVFNRR--IPMLKFFLKQELIWVPFLGLAWWALDFPFMKRYSKA 147
Query: 83 SVERNWEI---DEHVMRQMLSTFRN-PNDPLWLTI--FPEGTDFTEEKRNRSQKFAADVG 136
+ +N E+ D R+ F+ P TI F EGT FT EK + Q
Sbjct: 148 YLAKNPELKGKDLETTRRACEKFKRMPT-----TIVNFVEGTRFTPEKHQQQQS------ 196
Query: 137 LPVLTNVLLPKTRGFCLCLETLRNTLDAVYDMTIAYKNPCPSFMDNVFGVDPSEVHIHVR 196
P ++L PK G L + D + D+TI Y + PSF D + G ++ +HVR
Sbjct: 197 -P-YQHLLKPKAGGIAFALNAMGEQFDGLLDVTIVYPDGRPSFWDLLSG-RVKKIVVHVR 253
Query: 197 RIPVKEIPAS--ETDAA------AWLMDAFQLKDQLLDKFNAQGH 233
+P+ E D WL +Q KDQL+++ AQ +
Sbjct: 254 LLPIPEELIGDYFNDKEFRRRFQQWLNQLWQEKDQLIEQLLAQYN 298
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 66.9 bits (164), Expect = 2e-13
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 25/125 (20%)
Query: 27 EERVLLMANHRTEVDWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVER 86
+ V+++ANH++ +D + + R I+++ K L K+P GW +L I ++R
Sbjct: 23 KGPVIIVANHQSYLDPLVLGAALPRP-----IRFVAKKELFKIPFLGWLLRLLGAIPIDR 77
Query: 87 -NWEIDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRNRS---QKF-------AADV 135
N +R+ + + + IFPEGT R+R F A +
Sbjct: 78 GNGRSAREALREAIEALKEGE---SVVIFPEGT------RSRDGELLPFKSGAFRLAKEA 128
Query: 136 GLPVL 140
G+P++
Sbjct: 129 GVPIV 133
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 61.2 bits (149), Expect = 9e-12
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 27 EERVLLMANHRTEVDWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVER 86
+++ANH++ +D + + L L K + ++ K L+ LP+ GW +L I ++R
Sbjct: 13 GGPAIVVANHQSYLDPLLLS-LLLPKRGRPLV-FVAKDELLNLPLLGWLMRLLGCIFIDR 70
Query: 87 NWEIDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEK 124
D + L + + IFPEGT +
Sbjct: 71 KNAKDAANTLEYLVELLREGELVL--IFPEGTRSRGGE 106
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 60.7 bits (147), Expect = 1e-10
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Query: 12 RLKRRPLTPIRVFRVE-----ERVLLMANHRTEVDWMYVWDLALRKGCLGYIKYILKSSL 66
L + V +E L++ANH++ +D + + R+G ++++ K L
Sbjct: 43 LLLLLFGLRVEVEGLENLPKGGPALVVANHQSFLDPLLLSLALPRRG---PVRFVAKKEL 99
Query: 67 MKLPVFGWGFHILEFISVERNWEIDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRN 126
K+P+ GW +L I V+R DE +R ++ + L IFPEGT +
Sbjct: 100 FKVPLLGWLLRLLGAIPVDRENPDDE-TLRAAVARLK--AGGRSLVIFPEGTRSRGGEEL 156
Query: 127 RSQK-----FAADVGLPVL 140
K A + G+P++
Sbjct: 157 LPFKRGAARLALEAGVPIV 175
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 55.5 bits (134), Expect = 2e-09
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 27 EERVLLMANHRTEVDWMYVWDLALRKGCLGYIKYILK-SSLMKLPVFGWGFHILEFISVE 85
VL ++NH + D + ++ L L +G + ++ L + P F SV+
Sbjct: 25 GGPVLFVSNHSSWWDGLILF-LLLERGLRRDVYGLMDEELLERYPFFTRLG----AFSVD 79
Query: 86 RNWEI-DEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRN 126
R+ ++ + P +W IFPEGT +KR
Sbjct: 80 RDSPRSAAKSLKYVARLLSKPGSVVW--IFPEGTRTRRDKRP 119
>gnl|CDD|153250 cd07988, LPLAT_ABO13168-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
ABO13168. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
phospholipid/glycerol acyltransferases such as the
Acinetobacter baumannii ATCC 17978 locus ABO13168
putative acyltransferase, and similar proteins.
Length = 163
Score = 40.3 bits (95), Expect = 3e-04
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 27/122 (22%)
Query: 30 VLLMANHRTEVDWMYV----WDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVE 85
V++ A H + D++ + L L+ I ++ K SL K P G L I V+
Sbjct: 23 VVIGAPHTSNWDFVLGLLAAFALGLK------ISFLGKHSLFKPP-LGPFMRWLGGIPVD 75
Query: 86 RNWEIDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRNRSQKF-------AADVGLP 138
R+ ++ Q++ FR + L I PEGT R++ K+ A G+P
Sbjct: 76 RSRAGG--LVEQVVEEFRR-REEFVLAIAPEGT------RSKVDKWKTGFYHIARGAGVP 126
Query: 139 VL 140
+L
Sbjct: 127 IL 128
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 37.2 bits (87), Expect = 0.006
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 11/96 (11%)
Query: 25 RVEERVLLMANHRTEVDWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISV 84
E +++ANH + +D + + + + K L KLP G L I V
Sbjct: 21 PPEAPRIIVANHTSFIDPLIL-------FSDLFPSIVAKKELGKLPFIGTILRALGCIFV 73
Query: 85 ERNWEIDEHVMRQMLSTFRNPNDPLWLT--IFPEGT 118
+R+ D + + + DP W IFPEGT
Sbjct: 74 DRSEPKDRKKVVEEIK--ERATDPNWPPILIFPEGT 107
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 34.6 bits (80), Expect = 0.017
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 25/127 (19%)
Query: 29 RVLLMANHRTEVDWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVER-N 87
VL++ANH++ +D L L I +I K L +P FG + I ++R N
Sbjct: 17 PVLVVANHQSNLD-----PLTLSAAFPPPIVFIAKKELKWIPFFGIMLWLTGAIFIDREN 71
Query: 88 WEIDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRNRSQKF----------AADVGL 137
++ + + + +FPEGT R+R + A G+
Sbjct: 72 IRAIATALKAAIEVLKQ-GRSIG--VFPEGT------RSRGRDILPFKKGAFHIAIKAGV 122
Query: 138 PVLTNVL 144
P+L VL
Sbjct: 123 PILPVVL 129
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 29.9 bits (68), Expect = 1.2
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 16/98 (16%)
Query: 30 VLLMANHRTE-VDWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVERN- 87
V+ + NH +D L L ++++ K+ L K P+ GW I V R
Sbjct: 30 VIFLGNHPNALID-----PLLLAATLRRPVRFLAKADLFKNPLIGWLLESFGAIPVYRPK 84
Query: 88 ---WEIDEHVMRQMLSTFRNPNDPL----WLTIFPEGT 118
+ F + L + IFPEG
Sbjct: 85 DLARGGIGKISNAA--VFDAVGEALKAGGAIGIFPEGG 120
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 30.3 bits (69), Expect = 1.5
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 12/90 (13%)
Query: 30 VLLMANHRTEVDWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVERNWE 89
LL+ NH + +DW + + R I+++++ S+ + W F + I +
Sbjct: 443 ALLLGNHVSWIDWALLQAASPRP-----IRFVMERSIYEKWYLKWFFKLFGVIPISSG-- 495
Query: 90 IDEHVMRQMLSTFRNP-NDPLWLTIFPEGT 118
++ L R +D + IFPEG
Sbjct: 496 ----GSKESLEFIRKALDDGEVVCIFPEGA 521
>gnl|CDD|233217 TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein
PstA. This model describes PtsA, one of a pair of
permease proteins in the ABC (high affinity) phosphate
transporter. In a number of species, this permease is
fused with the PtsC protein (TIGR02138). In the model
bacterium Escherichia coli, this transport system is
induced when the concentration of extrallular inorganic
phosphate is low. A constitutive, lower affinity
transporter operates otherwise [Transport and binding
proteins, Anions].
Length = 271
Score = 28.7 bits (65), Expect = 3.9
Identities = 11/54 (20%), Positives = 18/54 (33%)
Query: 252 FIVVISLTAIFTYLTLFSSIWYKIYVGLACTSLASVTYFNIHPMLVVGFSKAMF 305
F + L+A+ L + Y + GL +L T G A+
Sbjct: 4 FTFISLLSALLALGPLIWILIYILIKGLPALNLGFFTKSPTPTGAEGGIGPAIV 57
>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 27.6 bits (62), Expect = 9.4
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 149 RGFCLCLETLRNTLDAVYDMTIAYKNPCPSFMDNVFGVDPSEVH 192
G + LE L DAV+ T A K P +D + G D V
Sbjct: 196 VGRDITLEELLKEYDAVFLATGAGK---PRPLD-IPGEDAKGVA 235
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.140 0.447
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,013,225
Number of extensions: 1518215
Number of successful extensions: 1782
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1763
Number of HSP's successfully gapped: 34
Length of query: 312
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 215
Effective length of database: 6,635,264
Effective search space: 1426581760
Effective search space used: 1426581760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.5 bits)