RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 021404
(312 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.009
Identities = 47/350 (13%), Positives = 94/350 (26%), Gaps = 119/350 (34%)
Query: 20 PIRVFRVEE-RVLLMANHRTEVDWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHI 78
P + EE ++M+ W L L K + ++ L + + +
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTL-LSKQEEMV-QKFVEEVLR--INYKF---L 94
Query: 79 LEFISVERNWEIDEHVMRQMLSTFRNP--NDPLWLTIFPEGTDFTEEKRN--RSQKFAAD 134
+ I E+ +M +M R+ ND +F K N R Q +
Sbjct: 95 MSPIKTEQR---QPSMMTRMYIEQRDRLYNDN---QVFA--------KYNVSRLQPYLK- 139
Query: 135 VGLPVLTNVLL---PKTR-------GF---CLCLETLRNTL------DAVYDMTIAYKNP 175
L LL P G + L+ + ++ + + N
Sbjct: 140 -----LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 176 -----------C----PSFMDNVFGVDPSEVHIHVRRIPVKEIPASET--------D--A 210
P++ ++ IH + ++ + S+
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 211 AAWLMDAFQLKDQLLDKFNAQGHFPNQCQENELSTL-----KCLVNFIVVISLTAI---- 261
A +AF L C+ L K + +F+ + T I
Sbjct: 255 NAKAWNAFNL----------------SCK-----ILLTTRFKQVTDFLSAATTTHISLDH 293
Query: 262 ----FTY---LTLFSSIWYKIYVGLACTSLASVTYFNIHPMLVVGFSKAM 304
T +L Y+ L +P + ++++
Sbjct: 294 HSMTLTPDEVKSLLLK-----YLDCRPQDLPREV-LTTNPRRLSIIAESI 337
Score = 32.1 bits (72), Expect = 0.25
Identities = 35/256 (13%), Positives = 72/256 (28%), Gaps = 85/256 (33%)
Query: 41 DWMYVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVERNWEIDEHVMRQMLS 100
D + WD K++ L I+E S+ ++ R+M
Sbjct: 339 DGLATWD---------NWKHVNCDKLTT---------IIE-SSLN---VLEPAEYRKM-- 374
Query: 101 TFRNPNDPLWLTIFPEGT--------------------DFTEEKRNRS----QKFAADVG 136
F L++FP + S Q + +
Sbjct: 375 -FDR------LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 137 LPVLTNVLLPKTRGFCLCLETLRNTLDAVYDMTIAYKN--PCPSFMDNVFGVDPSEVHI- 193
+P + L K L ++ Y++ + + P ++D F HI
Sbjct: 428 IPSIYLELKVKLEN----EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-----YSHIG 478
Query: 194 -HVRRIPVKEIPAS---------------ETDAAAWLMDAFQLKDQLLDKFNAQGHFPNQ 237
H++ I E D+ AW + + L + + +
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG-SILNTLQQLKFYKPYICDN 537
Query: 238 CQENELSTLKCLVNFI 253
+ E + +++F+
Sbjct: 538 DPKYE-RLVNAILDFL 552
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.014
Identities = 52/281 (18%), Positives = 87/281 (30%), Gaps = 100/281 (35%)
Query: 45 VWDLALR--KGCLGY-IKYILKSSLMKLPV-FG--WGFHILE--------------FISV 84
VW+ A K G+ I I+ ++ + L + FG G I E +
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704
Query: 85 ERNWEIDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFT---------------EEK--RNR 127
+ EI+EH TFR+ L T FT + K
Sbjct: 1705 KIFKEINEHSTSY---TFRSEKGLLSA------TQFTQPALTLMEKAAFEDLKSKGLIPA 1755
Query: 128 SQKFA-------------ADVGLPVLTNVLLPKTRGFCLCLETLRNTL-DAVYDMTIAYK 173
FA ADV + + + V + RG + + R+ L + Y M
Sbjct: 1756 DATFAGHSLGEYAALASLADV-MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM----- 1809
Query: 174 NPCPSFMDNVFGVDPSEVHIHVRRIPVKEIPASETDAAAWLMDAFQLKDQLLDKFNAQGH 233
++P V + ++ + WL++ +N
Sbjct: 1810 ----------IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN--------YNV--- 1848
Query: 234 FPNQCQ-----ENE-LSTLKCLVNF-----IVVISLTAIFT 263
NQ Q + L T+ ++NF I +I L +
Sbjct: 1849 -ENQ-QYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
Score = 32.3 bits (73), Expect = 0.23
Identities = 25/122 (20%), Positives = 38/122 (31%), Gaps = 41/122 (33%)
Query: 190 EVHIHVRRIPVKEIPASETDAAAWLMDAFQLKDQLLDKFNAQGHFP--NQCQENELSTLK 247
E + V P + ++ + A QL++Q FN P ++E +T
Sbjct: 17 EHVLLV--------PTA-----SFFI-ASQLQEQ----FNKILPEPTEGFAADDEPTT-- 56
Query: 248 CLVNFIVVISLTAIFTYLTLFSSIWYKIYVGLACTSL-ASVTYF--------NIHPMLVV 298
L F L SS+ VG L +T F +IH L
Sbjct: 57 -------PAELVGKF--LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH-ALAA 106
Query: 299 GF 300
Sbjct: 107 KL 108
Score = 31.6 bits (71), Expect = 0.45
Identities = 23/198 (11%), Positives = 48/198 (24%), Gaps = 67/198 (33%)
Query: 154 CLETLRNTLDAVYDMTIAYKNPCPSFMDNVFGV--DPSEVHIHVRRIPVKEIPASETDAA 211
E LR+ +Y Y + + + ++ + + +
Sbjct: 169 YFEELRD----LYQT---YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL-----NIL 216
Query: 212 AWLMDAFQLKD-----------------QL---LDKFNAQGHFPNQCQENELSTLKCLVN 251
WL + D QL + G P + +
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 252 FI--VVIS--------LTAIFTYLT-LFSSIWYKIYVGLACTSLASVTYFNI-------- 292
+ V I+ ++ +T LF ++G+ C T
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLF-------FIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 293 ------HPMLVV-GFSKA 303
PML + ++
Sbjct: 330 NNEGVPSPMLSISNLTQE 347
Score = 29.6 bits (66), Expect = 1.6
Identities = 18/96 (18%), Positives = 30/96 (31%), Gaps = 44/96 (45%)
Query: 177 PSFMDNVFGVDPSEVHIHVRRIPVKEIPASETDAAAWLMDAFQLKDQLLDKFNAQGHFPN 236
PS M ++ + +V +V +K N+ H P
Sbjct: 335 PSPMLSISNLTQEQVQDYV------------------------------NKTNS--HLPA 362
Query: 237 QCQENELSTLKCLVN----FIV---VISLTAIFTYL 265
++ E+S LVN +V SL + L
Sbjct: 363 G-KQVEIS----LVNGAKNLVVSGPPQSLYGLNLTL 393
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four
helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1
PDB: 1k30_A
Length = 367
Score = 32.5 bits (73), Expect = 0.14
Identities = 21/118 (17%), Positives = 43/118 (36%), Gaps = 23/118 (19%)
Query: 28 ERVLLMANHRTEVDWMYVWDLALRKG--CLGYIKYILKSSLMKLPV---FGWGFHILEFI 82
V+L++NH+TE D + L + ++ ++ P+ F G +++
Sbjct: 130 HNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVY 189
Query: 83 S----------VERNWEIDEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRNRSQK 130
S E + + +++M R + +W I P G R+R
Sbjct: 190 SKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIW--IAPSGG------RDRPDP 239
>2q09_A Imidazolonepropionase; 9252H, NYSGXRC, 3-(2, 5-dioxo-imidazo
4YL)-propionic acid, PSI-2 community, structural
genomics, structure initiative; HET: DI6; 1.97A
{Unidentified} SCOP: b.92.1.10 c.1.9.17 PDB: 2oof_A*
Length = 416
Score = 30.2 bits (68), Expect = 0.78
Identities = 8/48 (16%), Positives = 18/48 (37%)
Query: 92 EHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRNRSQKFAADVGLPV 139
E + ++++ + +F E F+ + + A GL V
Sbjct: 192 ETICQEIIPAAAEAGLADAVDVFCEHIGFSLAQTEQVYLAADQYGLAV 239
>2puz_A Imidazolonepropionase; NYSGXRC, PSI-2, N-formimino-L- glutamate,
product-bound, structural genomics, protein STRU
initiative; HET: NIG; 1.83A {Agrobacterium tumefaciens
str} SCOP: b.92.1.10 c.1.9.17 PDB: 2gok_A
Length = 419
Score = 28.0 bits (62), Expect = 4.1
Identities = 18/96 (18%), Positives = 31/96 (32%)
Query: 44 YVWDLALRKGCLGYIKYILKSSLMKLPVFGWGFHILEFISVERNWEIDEHVMRQMLSTFR 103
Y D+ L + + +++ H RN + V+ L
Sbjct: 156 YGLDIETELKMLRVARRLETLRPVRIVTSYLAAHATPADYKGRNADYITDVVLPGLEKAH 215
Query: 104 NPNDPLWLTIFPEGTDFTEEKRNRSQKFAADVGLPV 139
+ F EG F+ ++ +R A GLPV
Sbjct: 216 AEGLADAVDGFCEGIAFSVKEIDRVFAAAQQRGLPV 251
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314,
rhodococcus RHA1, structural genomics, PSI-2; HET: MSE;
2.05A {Rhodococcus SP}
Length = 209
Score = 27.6 bits (62), Expect = 4.8
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 214 LMDAFQLKDQLLDKFNAQGHFPNQCQE-NELSTLKCLV 250
L+DA + +D G P T + V
Sbjct: 108 LLDAPPSTNHAMDVCREAGFAPRVAYRTANFETARAFV 145
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer,
putative NUDI hydrolase, structural genomics, unknown
function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1
PDB: 1jrk_A 1k26_A
Length = 156
Score = 26.4 bits (58), Expect = 9.0
Identities = 10/52 (19%), Positives = 15/52 (28%)
Query: 162 LDAVYDMTIAYKNPCPSFMDNVFGVDPSEVHIHVRRIPVKEIPASETDAAAW 213
A + P P + P E HIH I + + + W
Sbjct: 59 FTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEW 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.140 0.447
Gapped
Lambda K H
0.267 0.0547 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,881,784
Number of extensions: 280837
Number of successful extensions: 669
Number of sequences better than 10.0: 1
Number of HSP's gapped: 667
Number of HSP's successfully gapped: 15
Length of query: 312
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 219
Effective length of database: 4,105,140
Effective search space: 899025660
Effective search space used: 899025660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.1 bits)