RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 021404
         (312 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 65.8 bits (160), Expect = 9e-13
 Identities = 25/230 (10%), Positives = 57/230 (24%), Gaps = 41/230 (17%)

Query: 28  ERVLLMANHRTEVDWMYVWDLALRKGC--LGYIKYILKSSLMKLPVFGWGFHILEFISVE 85
             V+L++NH+TE D   +  L  +          ++    ++  P+          I V 
Sbjct: 130 HNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVY 189

Query: 86  RNWEI-------------DEHVMRQMLSTFRNPNDPLWLTIFPEGTDFTEEKRNRSQKFA 132
               +             +   +++M    R       + I P G       R+R     
Sbjct: 190 SKKHMFDIPELTETKRKANTRSLKEMALLLR--GGSQLIWIAPSGG------RDRPD--- 238

Query: 133 ADVGLPVLTNVLLPKTRGFCLCLETLRNTLDAVYDMTIAYKNPCP---SFMDNVFGVDP- 188
                          +      L    +    ++ + +   +  P        +      
Sbjct: 239 -PSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGEKRVI 297

Query: 189 ----------SEVHIHVRRIPVKEIPASETDAAAWLMDAFQLKDQLLDKF 228
                      E+         K         +  L D+  ++  +L   
Sbjct: 298 AFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNVLKTA 347


>d1x71a1 b.60.1.1 (A:4-177) Neutrophil gelatinase-associated
           lipocalin (NGAL) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 174

 Score = 28.7 bits (63), Expect = 0.66
 Identities = 15/123 (12%), Positives = 36/123 (29%), Gaps = 12/123 (9%)

Query: 38  TEVDWMYVWDLALRKGCLGYIKYIL----KSSLMKLPVFGWGFHILEFISVERNWEIDEH 93
            E     V  +  RK    Y         +     L            ++      +  +
Sbjct: 56  KEDKSYNVTSVLFRKKKCDYWIRTFVPGSQPGEFTLGNIKSYP----GLTSYLVRVVSTN 111

Query: 94  VMRQML---STFRNPNDPLWLTIFPEGTDFTEEKRNRSQKFAADVGLPVLTNVLLPKTRG 150
             +  +          +   +T++    + T E +    +F+  +GLP   +++ P    
Sbjct: 112 YNQHAMVFFKKVSQNREYFKITLYGRTKELTSELKENFIRFSKSLGLPE-NHIVFPVPID 170

Query: 151 FCL 153
            C+
Sbjct: 171 QCI 173


>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
          binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 108

 Score = 26.8 bits (59), Expect = 1.4
 Identities = 7/33 (21%), Positives = 11/33 (33%)

Query: 8  KCDNRLKRRPLTPIRVFRVEERVLLMANHRTEV 40
          K D R  + P     ++  E    +     TE 
Sbjct: 12 KFDGRPTKPPPNSYSLYCAELMANMKDVPSTER 44


>d1n62b2 d.133.1.1 (B:147-809) Carbon monoxide (CO) dehydrogenase
           molybdoprotein {Oligotropha carboxidovorans, formerly
           Pseudomonas carboxydovorans [TaxId: 40137]}
          Length = 663

 Score = 28.0 bits (61), Expect = 1.5
 Identities = 12/130 (9%), Positives = 31/130 (23%), Gaps = 5/130 (3%)

Query: 183 VFGVDPSEVHIHVRRIP----VKEIPASETDAAAWLMDAFQLKDQL-LDKFNAQGHFPNQ 237
           + G+   ++H+    I      K    S    A        +  +   D+          
Sbjct: 106 ISGLPEHKIHVIAPDIGGGFGNKVGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFA 165

Query: 238 CQENELSTLKCLVNFIVVISLTAIFTYLTLFSSIWYKIYVGLACTSLASVTYFNIHPMLV 297
              +  + L    +  ++     +      F +            ++ + +Y      L 
Sbjct: 166 RDYHMTTELAATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLA 225

Query: 298 VGFSKAMFCC 307
           V         
Sbjct: 226 VDGVYTNKAS 235


>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato
           (Solanum tuberosum) [TaxId: 4113]}
          Length = 230

 Score = 26.9 bits (59), Expect = 2.7
 Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 12/139 (8%)

Query: 70  PVFGWGFHILEFISVERNWEIDEHVMRQMLSTF---RNPNDPLWLTIFPEGTDFTEEKR- 125
           P    G  +++ +    +  +D H+M                  +++  E +      R 
Sbjct: 51  PNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRT 110

Query: 126 -NRSQKFAADVGLPVLTNVLLPKTRGFCLCLETLRNTLDAVYDMTIAYKNPCPSFMDNVF 184
            N+ +   A  G+     VL P T      +E + + +D V  M++       SF+++  
Sbjct: 111 INQIKSLGAKAGV-----VLNPGTP--LTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQV 163

Query: 185 GVDPSEVHIHVRRIPVKEI 203
                   I   R     I
Sbjct: 164 KKISDLRKICAERGLNPWI 182


>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 217

 Score = 26.6 bits (58), Expect = 3.2
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 75  GFHILEFISVERNWEIDEHV 94
           G  I   +S E NW+I   +
Sbjct: 196 GVEIEGPLSTETNWDIAHMI 215


>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large
           subunit QorL {Pseudomonas putida [TaxId: 303]}
          Length = 621

 Score = 25.7 bits (55), Expect = 8.5
 Identities = 4/37 (10%), Positives = 8/37 (21%), Gaps = 4/37 (10%)

Query: 182 NVFGVDPSEVHIHVRRIP----VKEIPASETDAAAWL 214
               +    + + V  +      K     E      L
Sbjct: 70  MFCAIPEHLIEVRVPDVGGGFGQKAHLHPEELLVCLL 106


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.140    0.447 

Gapped
Lambda     K      H
   0.267   0.0444    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,225,865
Number of extensions: 56832
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 162
Number of HSP's successfully gapped: 11
Length of query: 312
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,240,546
Effective search space: 281603942
Effective search space used: 281603942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.9 bits)