BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021405
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AJB|A Chain A, Crystal Structure Of Human Pex3p In Complex With
N-Terminal Pex19p Peptide
Length = 330
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 164/336 (48%), Gaps = 51/336 (15%)
Query: 2 QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
Q H+E QR + T L + L + ++L+ LT L K +P S KLE+W+
Sbjct: 12 QYHFESNQRTCNMTVL-SMLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWE 62
Query: 62 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 121
LKI+SFT+ VA+++ M+ + +RVQ+NI+G ++Y+D A +G + L D Q
Sbjct: 63 DLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG---TTILAPPDVQ 118
Query: 122 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 181
Q++L+S+ +L G+ +I+ ++ A + L L+ + + L + +I + S
Sbjct: 119 QQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKS 178
Query: 182 PHQWVD----------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRAVLS 228
W++ ++MP D V A G D TT+ +L+ ETR +L
Sbjct: 179 -SSWINKDGSKPLLCHYMMP-DEETPLAVQACGLSPRDITTI-------KLLNETRDMLE 229
Query: 229 SAEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQM 275
S ++++V++ L+D M +Q G S+ S +PLAK++P V
Sbjct: 230 SPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQ 289
Query: 276 SPSLLAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 310
S+ +E PS+ +Q + T+ +V+ F +Y S
Sbjct: 290 IHSVCSETPSH--FVQDLLTMEQVKDFAANVYEAFS 323
>pdb|3MK4|A Chain A, X-Ray Structure Of Human Pex3 In Complex With A Pex19
Derived Peptide
Length = 334
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 164/336 (48%), Gaps = 51/336 (15%)
Query: 2 QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
Q H+E QR + T L + L + ++L+ LT L K +P S KLE+W+
Sbjct: 16 QYHFESNQRTCNMTVL-SMLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWE 66
Query: 62 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 121
LKI+SFT+ VA+++ M+ + +RVQ+NI+G ++Y+D A +G + L D Q
Sbjct: 67 DLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG---TTILAPPDVQ 122
Query: 122 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 181
Q++L+S+ +L G+ +I+ ++ A + L L+ + + L + +I + S
Sbjct: 123 QQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKS 182
Query: 182 PHQWVD----------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRAVLS 228
W++ ++MP D V A G D TT+ +L+ ETR +L
Sbjct: 183 -SSWINKDGSKPLLSHYMMP-DEETPLAVQACGLSPRDITTI-------KLLNETRDMLE 233
Query: 229 SAEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQM 275
S ++++V++ L+D M +Q G S+ S +PLAK++P V
Sbjct: 234 SPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQ 293
Query: 276 SPSLLAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 310
S+ +E PS+ +Q + T+ +V+ F +Y S
Sbjct: 294 IHSVCSETPSH--FVQDLLTMEQVKDFAANVYEAFS 327
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 41 LLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSL----YIRVQVNILGRHL 96
++ GK L + LE +DRL+ LS+ + V L ++VS ++R + RH
Sbjct: 197 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH 256
Query: 97 YIDTARGLGSS--DLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGK 154
+T L + DL +D D I++ ++K L + Y M I V+ AL +
Sbjct: 257 CPNTPIILVGTKLDLRDDKDTIEKLKEKK-LTPITYPQGLAMAKEIGAVKYLECSALTQR 315
Query: 155 QLRDIFNTVV 164
L+ +F+ +
Sbjct: 316 GLKTVFDEAI 325
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 41 LLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSL----YIRVQVNILGRHL 96
++ GK L + LE +DRL+ LS+ + V L ++VS ++R + RH
Sbjct: 197 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH 256
Query: 97 YIDTARGLGSS--DLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGK 154
+T L + DL +D D I++ ++K L + Y M I V+ AL +
Sbjct: 257 CPNTPIILVGTKLDLRDDKDTIEKLKEKK-LTPITYPQGLAMAKEIGAVKYLECSALTQR 315
Query: 155 QLRDIFNTVV 164
L+ +F+ +
Sbjct: 316 GLKTVFDEAI 325
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 41 LLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSL----YIRVQVNILGRHL 96
++ GK L + LE +DRL+ LS+ + V L ++VS ++R + RH
Sbjct: 197 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHH 256
Query: 97 YIDTARGLGSS--DLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGK 154
+T L + DL +D D I++ ++K L + Y M I V+ AL +
Sbjct: 257 CPNTPIILVGTKLDLRDDKDTIEKLKEKK-LTPITYPQGLAMAKEIGAVKYLECSALTQR 315
Query: 155 QLRDIFNTVV 164
L+ +F+ +
Sbjct: 316 GLKTVFDEAI 325
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 41 LLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSL----YIRVQVNILGRHL 96
++ GK L + LE +DRL+ LS+ + V L ++VS +R + RH
Sbjct: 48 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH 107
Query: 97 YIDTARGLGSS--DLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGK 154
+T L + DL +D D I++ ++K L + Y M I V+ AL +
Sbjct: 108 CPNTPIILVGTKLDLRDDKDTIEKLKEKK-LTPITYPQGLAMAKEIGAVKYLECSALTQR 166
Query: 155 QLRDIFNTVV 164
L+ +F+ +
Sbjct: 167 GLKTVFDEAI 176
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 41 LLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSL----YIRVQVNILGRHL 96
++ GK L + LE +DRL+ LS+ + V L ++VS +R + RH
Sbjct: 45 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH 104
Query: 97 YIDTARGLGSS--DLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGK 154
+T L + DL +D D I++ ++K L + Y M I V+ AL +
Sbjct: 105 CPNTPIILVGTKLDLRDDKDTIEKLKEKK-LTPITYPQGLAMAKEIGAVKYLECSALTQR 163
Query: 155 QLRDIFNTVV 164
L+ +F+ +
Sbjct: 164 GLKTVFDEAI 173
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 41 LLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSL----YIRVQVNILGRHL 96
++ GK L + LE +DRL+ LS+ + V L ++VS +R + RH
Sbjct: 72 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH 131
Query: 97 YIDTARGLGSS--DLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGK 154
+T L + DL +D D I++ ++K L + Y M I V+ AL +
Sbjct: 132 CPNTPIILVGTKLDLRDDKDTIEKLKEKK-LTPITYPQGLAMAKEIGAVKYLECSALTQR 190
Query: 155 QLRDIFNTVV 164
L+ +F+ +
Sbjct: 191 GLKTVFDEAI 200
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 41 LLRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSL----YIRVQVNILGRHL 96
++ GK L + LE +DRL+ LS+ + V L ++VS +R + RH
Sbjct: 45 MVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH 104
Query: 97 YIDTARGLGSS--DLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQAAADEALKGK 154
+T L + DL +D D I++ ++K L + Y M I V+ AL +
Sbjct: 105 CPNTPIILVGTKLDLRDDKDTIEKLKEKK-LTPITYPQGLAMAKEIGAVKYLECSALTQR 163
Query: 155 QLRDIFNTVV 164
L+ +F+ +
Sbjct: 164 GLKTVFDEAI 173
>pdb|3VP4|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
Inhibitor 4
Length = 316
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 238 MSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSL 279
MSF + +D L + + QSGG + A +P++ + SP L
Sbjct: 8 MSFTSHIDELYESAKKQSGGKV------ADYIPQLAKFSPDL 43
>pdb|3SS3|A Chain A, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
pdb|3SS3|B Chain B, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
pdb|3SS3|C Chain C, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
pdb|3SS3|D Chain D, Crystal Structure Of Mouse Glutaminase C, Ligand-Free Form
pdb|3SS4|A Chain A, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
Form
pdb|3SS4|B Chain B, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
Form
pdb|3SS4|C Chain C, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
Form
pdb|3SS4|D Chain D, Crystal Structure Of Mouse Glutaminase C, Phosphate-Bound
Form
pdb|3SS5|A Chain A, Crystal Structure Of Mouse Glutaminase C,
L-Glutamate-Bound Form
pdb|3SS5|B Chain B, Crystal Structure Of Mouse Glutaminase C,
L-Glutamate-Bound Form
pdb|3SS5|C Chain C, Crystal Structure Of Mouse Glutaminase C,
L-Glutamate-Bound Form
pdb|3SS5|D Chain D, Crystal Structure Of Mouse Glutaminase C,
L-Glutamate-Bound Form
Length = 479
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 238 MSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSL 279
MSF + +D L + + QSGG + A +P++ + SP L
Sbjct: 106 MSFTSHIDELYESAKKQSGGKV------ADYIPQLAKFSPDL 141
>pdb|3CZD|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
L-Glutamate
pdb|3VOY|A Chain A, Crystal Structure Of Human Glutaminase In Apo Form
pdb|3VOZ|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
Bptes
pdb|3VP0|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
L-Glutamine
pdb|3VP1|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
L-Glutamate And Bptes
pdb|3VP2|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
Inhibitor 2
pdb|3VP3|A Chain A, Crystal Structure Of Human Glutaminase In Complex With
Inhibitor 3
Length = 315
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 238 MSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSL 279
MSF + +D L + + QSGG + A +P++ + SP L
Sbjct: 7 MSFTSHIDELYESAKKQSGGKV------ADYIPQLAKFSPDL 42
>pdb|3UNW|A Chain A, Crystal Structure Of Human Gac In Complex With Glutamate
pdb|3UNW|B Chain B, Crystal Structure Of Human Gac In Complex With Glutamate
pdb|3UNW|C Chain C, Crystal Structure Of Human Gac In Complex With Glutamate
pdb|3UNW|D Chain D, Crystal Structure Of Human Gac In Complex With Glutamate
pdb|3UO9|A Chain A, Crystal Structure Of Human Gac In Complex With Glutamate
And Bptes
pdb|3UO9|B Chain B, Crystal Structure Of Human Gac In Complex With Glutamate
And Bptes
pdb|3UO9|C Chain C, Crystal Structure Of Human Gac In Complex With Glutamate
And Bptes
pdb|3UO9|D Chain D, Crystal Structure Of Human Gac In Complex With Glutamate
And Bptes
Length = 534
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
Query: 238 MSFKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSL 279
MSF + +D L + + QSGG + A +P++ + SP L
Sbjct: 155 MSFTSHIDELYESAKKQSGGKV------ADYIPQLAKFSPDL 190
>pdb|1EQ7|A Chain A, Core Structure Of The Outer Membrane Lipoprotein From
Escherichia Coli At 1.9 Angstrom Resolution
Length = 56
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 120 DQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQ 155
D Q A VD L+N + AM S+VQAA D+A + Q
Sbjct: 12 DVQTLNAKVDQLSN-DVNAMRSDVQAAKDDAARANQ 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,047,565
Number of Sequences: 62578
Number of extensions: 298791
Number of successful extensions: 869
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 864
Number of HSP's gapped (non-prelim): 15
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)