BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021405
(312 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S9K7|PEX32_ARATH Peroxisome biogenesis protein 3-2 OS=Arabidopsis thaliana GN=PEX3-2
PE=2 SV=1
Length = 364
Score = 365 bits (936), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/311 (57%), Positives = 237/311 (76%), Gaps = 10/311 (3%)
Query: 1 MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELW 60
M+AH+E +Q I D+TTLPHAM +LSIRI+EE+D+S + D+L +GK LS EKL+LW
Sbjct: 60 MKAHFESIQMIVDSTTLPHAMQFLSIRISEEIDVSHVMDRLNQGKGM---LSPPEKLQLW 116
Query: 61 DRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDD 120
D LKILSFT++V++LW+VTM+SLYIRVQVNILGRHLY+DTAR LGSS L E+ DLIDRDD
Sbjct: 117 DELKILSFTRMVLSLWSVTMLSLYIRVQVNILGRHLYVDTARALGSSHLLEEVDLIDRDD 176
Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
+QKFL+S D+L M ++IS++Q +A+E LKGKQL+D+ T VL ET MQI++VFMS G
Sbjct: 177 EQKFLSSADFLVTNAMPSLISDMQGSAEEVLKGKQLKDVITTRVLQETVMQIVDVFMSTG 236
Query: 181 SPHQWVDFL-MPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMS 239
SPH WVD+L MPQD + + T+ DE +KF +LMVETR VL S E+T++V++S
Sbjct: 237 SPHHWVDYLMMPQDTKLSR-TTSDSSDE----AVSKFHQLMVETREVLISTEFTNIVEIS 291
Query: 240 FKAAVDALIDEMRVQS-GGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEV 298
K D L++EM Q+ G L +G PLAK++P++ + + AEPS NR +Q+IR +PEV
Sbjct: 292 LKCFTDVLVEEMETQTEAGGLATGKPLAKVLPQIEKTMNVITAEPSKNRFLQIIRDLPEV 351
Query: 299 ELFFTLLYANM 309
+LFFTLLYANM
Sbjct: 352 KLFFTLLYANM 362
>sp|Q8LDG7|PEX31_ARATH Peroxisome biogenesis protein 3-1 OS=Arabidopsis thaliana GN=PEX3-1
PE=2 SV=2
Length = 358
Score = 349 bits (896), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 176/310 (56%), Positives = 229/310 (73%), Gaps = 14/310 (4%)
Query: 1 MQAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELW 60
M+AH++ +Q IAD TTLPHA+H+LS R+ EE+D+S + DKL +GK L SEKL+LW
Sbjct: 60 MKAHFDNIQMIADTTTLPHAIHHLSSRVVEEIDVSSIMDKLSKGKG---ILIPSEKLQLW 116
Query: 61 DRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDD 120
+ LKILSFT++V++LW+VTM+SLYIRVQVNILGRHLYIDTARGLGSS L ++ DLI+RDD
Sbjct: 117 NELKILSFTRMVLSLWSVTMLSLYIRVQVNILGRHLYIDTARGLGSSHLLDELDLIERDD 176
Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
+QKFL S D+LA GM ++ISN+Q A E LKGKQL+D+ T L ET M+IL+VFMS G
Sbjct: 177 EQKFLTSADFLATSGMPSLISNMQNAVKEVLKGKQLKDVLTTSALRETVMRILDVFMSTG 236
Query: 181 SPHQWVDFL-MPQDIRFYKLVTASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMS 239
SPH WVD+L M QD S D T TKF L+ ETR VL+S ++++V ++S
Sbjct: 237 SPHHWVDYLMMSQD----ATTDVSSSDAT----VTKFHLLITETREVLTSNDFSNVAEIS 288
Query: 240 FKAAVDALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVE 299
K AL++EM Q+G L +GM LAKL+P++ + P + AEP NR +Q+IR +PEV+
Sbjct: 289 LKCCAVALVEEMETQTG--LATGMQLAKLLPQIEKTMPEISAEPEKNRFLQLIRDLPEVK 346
Query: 300 LFFTLLYANM 309
LFFTLLYANM
Sbjct: 347 LFFTLLYANM 356
>sp|Q60HE1|PEX3_MACFA Peroxisomal biogenesis factor 3 OS=Macaca fascicularis GN=PEX3 PE=2
SV=1
Length = 373
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 166/339 (48%), Gaps = 57/339 (16%)
Query: 2 QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
Q H+E QR + T L + L + ++L+ LT L K +P S KLE+W+
Sbjct: 55 QYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWE 105
Query: 62 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 121
LKI+SFT+ +VA+++ M+ + +RVQ+NI+G ++Y+D A +G + L D Q
Sbjct: 106 DLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG---TTILAPPDVQ 161
Query: 122 QKFLASVDYLANYGMQAMISNVQAAADEALKG-------------KQLRDIFNTVVLHET 168
Q++L+S+ +L G+ +I+ ++ A + L ++L++I N V H++
Sbjct: 162 QQYLSSIQHLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRNLVEQHKS 221
Query: 169 FMQILEVFMSMGSPHQWVDFLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRA 225
I GS ++MP D V A G D TT+ +L+ ETR
Sbjct: 222 SSWI----NKDGSKSLLCHYMMP-DEETPLAVQACGLSPRDITTI-------KLLNETRD 269
Query: 226 VLSSAEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRV 272
+L S ++++V++ L+D M +Q G S+ S +PLAK++P V
Sbjct: 270 MLESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIV 329
Query: 273 VQMSPSLLAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 310
S+ +E PS+ +Q + T+ +V+ F +Y S
Sbjct: 330 NGQIHSVCSETPSH--FVQDLLTMEQVKDFAANVYEAFS 366
>sp|Q9JJK3|PEX3_CRILO Peroxisomal biogenesis factor 3 OS=Cricetulus longicaudatus GN=PEX3
PE=2 SV=1
Length = 373
Score = 95.1 bits (235), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 81/294 (27%), Positives = 143/294 (48%), Gaps = 42/294 (14%)
Query: 2 QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
Q H+E QR + T L + L + ++L+ LT L K +P S KLE+W+
Sbjct: 55 QYHFESNQRTCNMTVL-SMLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWE 105
Query: 62 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTAR-GLGSSDLPEDADLIDRDD 120
LKI+SFT+ +VA+++ M+ + +RVQ+NI+G ++Y+D A G + + L D
Sbjct: 106 DLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNATVGKNGTTV-----LAPPDV 160
Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
QQ++L+S+ +L G+ +++ ++ A L L+ + + L + +I +
Sbjct: 161 QQQYLSSIQHLLGDGLTELVTVIKQAVQRILGSVSLKHSLSLLDLEQKLKEIRILVEQHR 220
Query: 181 SPHQWVDFLMPQDIRFYKLVTASGHDETTLSGATKFD---------ELMVETRAVLSSAE 231
SP W+D +D+ L DE T A + +L+ ETR +L S +
Sbjct: 221 SP-SWID----KDVSKSSLCQYMMPDEETPLAAQAYGLSPRDITTIKLLNETRDMLESPD 275
Query: 232 YTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRV 272
+++V++ L+D M +Q G S+ S +PLAK++P V
Sbjct: 276 FSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIV 329
>sp|P56589|PEX3_HUMAN Peroxisomal biogenesis factor 3 OS=Homo sapiens GN=PEX3 PE=1 SV=1
Length = 373
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 93/336 (27%), Positives = 164/336 (48%), Gaps = 51/336 (15%)
Query: 2 QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
Q H+E QR + T L + L + ++L+ LT L K +P S KLE+W+
Sbjct: 55 QYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWE 105
Query: 62 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 121
LKI+SFT+ VA+++ M+ + +RVQ+NI+G ++Y+D A +G + L D Q
Sbjct: 106 DLKIISFTRSTVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG---TTILAPPDVQ 161
Query: 122 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 181
Q++L+S+ +L G+ +I+ ++ A + L L+ + + L + +I + S
Sbjct: 162 QQYLSSIQHLLGDGLTELITVIKQAVQKVLGSVSLKHSLSLLDLEQKLKEIRNLVEQHKS 221
Query: 182 PHQWVD----------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRAVLS 228
W++ ++MP D V A G D TT+ +L+ ETR +L
Sbjct: 222 S-SWINKDGSKPLLCHYMMP-DEETPLAVQACGLSPRDITTI-------KLLNETRDMLE 272
Query: 229 SAEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQM 275
S ++++V++ L+D M +Q G S+ S +PLAK++P V
Sbjct: 273 SPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSMNSLSSVSLPLAKIIPIVNGQ 332
Query: 276 SPSLLAE-PSNNRIIQVIRTIPEVELFFTLLYANMS 310
S+ +E PS+ +Q + T+ +V+ F +Y S
Sbjct: 333 IHSVCSETPSH--FVQDLLTMEQVKDFAANVYEAFS 366
>sp|A6H7C2|PEX3_BOVIN Peroxisomal biogenesis factor 3 OS=Bos taurus GN=PEX3 PE=2 SV=1
Length = 373
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/311 (27%), Positives = 154/311 (49%), Gaps = 49/311 (15%)
Query: 2 QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
Q H+E QR + T L + L + ++L+ LT L K +P S KLE+W+
Sbjct: 55 QYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KTRP-----SNKLEIWE 105
Query: 62 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQ 121
LKI+SFT+ +VA+++ M+ + +RVQ+NI+G ++Y+D A +G + L D Q
Sbjct: 106 DLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNA-AVGKNG---TTVLAPPDVQ 161
Query: 122 QKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGS 181
Q++L+S+ +L G+ +I+ ++ A + L L+ + + L + +I ++ S
Sbjct: 162 QQYLSSIQHLLGDGLTELITVIKQAVQKILGSVSLKHSLSLLDLEQKLKEIRDLVEQHKS 221
Query: 182 PHQWVD----------FLMPQDIRFYKLVTASG---HDETTLSGATKFDELMVETRAVLS 228
W++ ++MP D V A G D TT+ +L+ ETR +L
Sbjct: 222 S-SWINNDGSKSLLCHYMMP-DEETPLAVQACGLSPRDVTTI-------KLLNETRDMLE 272
Query: 229 SAEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQM 275
S ++++V++ L+D M +Q G S+ S +PLAK++P +
Sbjct: 273 SPDFSTVLNTCLSRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIINGQ 332
Query: 276 SPSLLAE-PSN 285
S+ +E PS+
Sbjct: 333 IHSVCSETPSH 343
>sp|Q9QXY9|PEX3_MOUSE Peroxisomal biogenesis factor 3 OS=Mus musculus GN=Pex3 PE=2 SV=1
Length = 372
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 149/310 (48%), Gaps = 48/310 (15%)
Query: 2 QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
Q H+E QR + T L + L + ++L+ LT L K +P S KLE+W+
Sbjct: 55 QYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KSRP-----SNKLEIWE 105
Query: 62 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTAR-GLGSSDLPEDADLIDRDD 120
LKI+SFT+ +VA+++ M+ + +RVQ+NI+G ++Y+D A G + + L D
Sbjct: 106 DLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNATVGKNGTTV-----LAPPDV 160
Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMG 180
QQ++L+S+ +L G+ +++ ++ A L L+ + + L + +I +
Sbjct: 161 QQQYLSSIQHLLGDGLTELVTVIKQAVQRILGSVSLKHSLSLLDLEQKLKEI----RILV 216
Query: 181 SPHQ--WVDFLMPQDIRFYKLVTASGHDETTLSGATKFD---------ELMVETRAVLSS 229
HQ W D +D+ L DE T A + +L+ ETR +L S
Sbjct: 217 EQHQSSWND----KDVSRSSLCQYMMPDEETPLAAQAYGLSHRDITTIKLLNETRDMLES 272
Query: 230 AEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQMS 276
++++V++ L+D M +Q G S+ S +PLAK++P V
Sbjct: 273 PDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIVNGQI 332
Query: 277 PSLLAE-PSN 285
S+ +E PS+
Sbjct: 333 HSVCSETPSH 342
>sp|Q9JJK4|PEX3_RAT Peroxisomal biogenesis factor 3 OS=Rattus norvegicus GN=Pex3 PE=1
SV=1
Length = 372
Score = 89.7 bits (221), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 152/312 (48%), Gaps = 52/312 (16%)
Query: 2 QAHYEEVQRIADATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWD 61
Q H+E QR + T L + L + ++L+ LT L K +P S KLE+W+
Sbjct: 55 QYHFESNQRTCNMTVLS-MLPTLREALMQQLNSESLTALL---KNRP-----SNKLEIWE 105
Query: 62 RLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTAR-GLGSSDLPEDADLIDRDD 120
LKI+SFT+ +VA+++ M+ + +RVQ+NI+G ++Y+D A G + + L D
Sbjct: 106 DLKIISFTRSIVAVYSTCMLVVLLRVQLNIIGGYIYLDNATVGKNGTSI-----LAPPDV 160
Query: 121 QQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQI---LEVFM 177
QQ++L+S+ +L G+ +++ ++ A L L+ + + L + +I +E
Sbjct: 161 QQQYLSSIQHLLGDGLTELVTVIKQAVQRILGSISLKHSLSLLDLEQKLKEIRTLVEQHR 220
Query: 178 SM-----GSPHQWVDFLMPQD-----IRFYKLVTASGHDETTLSGATKFDELMVETRAVL 227
S S ++MP + + Y L S D TT+ +L+ ETR +L
Sbjct: 221 SCWNDKDASKSSLCHYMMPDEETPLAAQAYGL---SPRDITTI-------KLLNETRDML 270
Query: 228 SSAEYTSVVDMSFKAAVDALIDEMR---------VQSGGSLIS----GMPLAKLVPRVVQ 274
S ++++V++ L+D M +Q G S+ S +PLAK++P V
Sbjct: 271 ESPDFSTVLNTCLNRGFSRLLDNMAEFFRPTEQDLQHGNSINSLSSVSLPLAKIIPIVNG 330
Query: 275 MSPSLLAE-PSN 285
S+ +E PS+
Sbjct: 331 QIHSVCSETPSH 342
>sp|Q54U86|PEX3_DICDI Peroxisome biogenesis factor 3 OS=Dictyostelium discoideum GN=pex3
PE=3 SV=1
Length = 405
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/298 (21%), Positives = 132/298 (44%), Gaps = 46/298 (15%)
Query: 28 IAEELDLSPLTDKL-------LRGKEQPYTLSSSEKLELWDRLKILSFTKLVVALWAVTM 80
I + +D + + DK+ +R ++ P SEKL+L D+LK+ TKL L+ + M
Sbjct: 86 ITKFIDENKILDKIQTPSLASIRSEKDP-----SEKLKLTDQLKVSIITKLFSVLYIIPM 140
Query: 81 VSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADLIDRDDQQKFLASVD---YLANYGMQ 137
V+++ R+Q+N++G++ Y+D L LI++ + F+ S + + +
Sbjct: 141 VTIFNRLQINLIGKYCYLDYV--LYKDQEQHSMRLINQQTESNFINSRNNCYFFKDINFS 198
Query: 138 AMISNVQAAADEALKGKQLRDIFNTVVLHETFMQIL----------EVFMSMGSPHQWVD 187
I+ +Q +LK ++ + E F+++L E+ S+ S + +
Sbjct: 199 QFINLIQEQIKISLKDWKI----DQQSSFEGFLKLLINIRNNFEKKEIIASISSDNSLLK 254
Query: 188 FLMPQDIRFYKLVTASGHDETTLSGATKFDELMV---ETRAVLSSAEYTSV----VDMSF 240
+L+P + LV + E ++ L + E R + S ++ V ++ SF
Sbjct: 255 YLIPTEEEIDNLVQSQKTPEN--DNDIEYQNLKMLYNEIRNIFESQKFYDVLKDSINQSF 312
Query: 241 KAAVDALID-----EMRVQSGGSLISGMPLAKLVPR-VVQMSPSLLAEPSNNRIIQVI 292
L + E++ Q ++ +P+ +P+ +V M +L N +I +I
Sbjct: 313 LEFTKNLREDFESTELKKQIDSIVLPDLPIEMEIPKPLVTMHNIILLPKINKQIGNII 370
>sp|Q92262|PEX3_PICPA Peroxisomal biogenesis factor 3 OS=Komagataella pastoris GN=PEX3
PE=3 SV=1
Length = 455
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 18/121 (14%)
Query: 47 QPYTLSSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGS 106
+P L S K +LW LKI + T+ + ++ +++ +++ +Q+NIL R Y++TA L S
Sbjct: 133 KPPELKS--KNQLWQELKIKAITRFLTLIYCESLLIVFLHLQLNILSRKSYLETAIRLAS 190
Query: 107 SDLPEDADLIDRD--------------DQQKFLASVDYLANYGMQAMISNVQAAADEALK 152
+ DL+D++ +Q FL+ +L N G + + ++ ++
Sbjct: 191 E--TQGIDLVDQESNGDFSGNTQDENLSEQAFLSFSWWLLNKGWLEIKNKIEPCVEQHFG 248
Query: 153 G 153
G
Sbjct: 249 G 249
>sp|P28795|PEX3_YEAST Peroxisomal biogenesis factor 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PEX3 PE=1 SV=1
Length = 441
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 39 DKLLRGKEQPYTLSS--SEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHL 96
++L R K SS K ELW+ L++ S KLV + V+ + L R+Q+NIL R+
Sbjct: 105 NQLTRAKSSESRESSPLKSKAELWNELELKSLIKLVTVTYTVSSLILLTRLQLNILTRNE 164
Query: 97 YIDTA 101
Y+D+A
Sbjct: 165 YLDSA 169
>sp|O14017|YDPE_SCHPO Uncharacterized protein C29A4.14c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC29A4.14c PE=4 SV=3
Length = 346
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/307 (19%), Positives = 127/307 (41%), Gaps = 34/307 (11%)
Query: 14 ATTLPHAMHYLSIRIAEELDLSPLTDKLLRGKEQPYTLSSSEKLELWDRLKILSFTKLVV 73
AT+ H L I + L P+ +L + +S+ EK+ LW++LK +S ++
Sbjct: 66 ATSAISTFHILKDEIIRRIPLLPIIQELRETRMSE--VSAEEKILLWNQLKFMSLVRMFT 123
Query: 74 ALWAVTMVSLYIRVQVNILGRHLYIDT-ARGLGSSDL--PEDADLIDRDDQQKFLASVDY 130
L + +L ++ + +LGR + + + S+ P +D +D F
Sbjct: 124 TLAVLAQCNLLCKLALTVLGREAFKEQMVKEFDPSNTLRPSGSD----EDPAVFTGIAYI 179
Query: 131 LANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSMGSPHQWVDFLM 190
L N + +I VQ A + DI + ++ +++EVF+ + +Q+
Sbjct: 180 LLNNQLDELIQQVQLAVTLTFEEVSPTDIVDRKLIEALTTRVVEVFV---NNYQF----- 231
Query: 191 PQDIRFYKLVTASGHDETTLSGATKFDELMVETR---AVLSSAEYTSVVDMSF--KAAVD 245
+ G+ E L+ K + +V VL ++ + +D S K +
Sbjct: 232 ----------SIDGNKEVLLAEIPK--QYIVTGNLLYRVLELEDFATQMDASIVMKNELI 279
Query: 246 ALIDEMRVQSGGSLISGMPLAKLVPRVVQMSPSLLAEPSNNRIIQVIRTIPEVELFFTLL 305
AL + M G+ LAK++ ++S ++ P + Q ++ + +V + ++
Sbjct: 280 ALNEHMLTYLPSIPQEGIRLAKILTTFTKISENVFEAPFQEQFFQSLQMVSDVNRYMAIV 339
Query: 306 YANMSDS 312
+++ D
Sbjct: 340 FSSFDDC 346
>sp|Q01497|PEX3_PICAN Peroxisomal biogenesis factor 3 OS=Pichia angusta GN=PEX3 PE=3 SV=1
Length = 457
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 56 KLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLP---ED 112
K +LW+ L+ S T+ + L+ +++ +++ +Q+NIL R Y++TA L S E+
Sbjct: 144 KTQLWNELRNQSITRFLTLLYCESLLIVFLHLQLNILSRRSYLETAIKLASKTKGIKLEN 203
Query: 113 ADLIDRDDQQKFLASVDYLA 132
+D D FL + + LA
Sbjct: 204 ESNVDLDPANLFLENDEELA 223
>sp|O94227|PEX3_KLULA Peroxisomal biogenesis factor 3 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=PEX3 PE=3 SV=1
Length = 483
Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 52 SSSEKLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTA 101
S+ K ELWD LK+ + TK+++ + +++ L R+Q+NIL R Y+DTA
Sbjct: 150 STKSKAELWDDLKLKAITKIIILSYTTSLLMLLTRLQLNILARREYLDTA 199
>sp|Q874C0|PEX3_YARLI Peroxisomal biogenesis factor 3 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=PEX3 PE=3 SV=1
Length = 431
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 60/302 (19%), Positives = 116/302 (38%), Gaps = 51/302 (16%)
Query: 56 KLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGL----------- 104
K +LW LK + ++ ++A ++ + R+Q+NILGR Y+++ L
Sbjct: 129 KTQLWQDLKRTTISRAFSLVYADALLIFFTRLQLNILGRRNYVNSVVALAQQGREGNAEG 188
Query: 105 -------------------GSSDLPEDADLIDRDDQQKFLASVDYLANYGMQAMISNVQA 145
GSS E ++D D +++L +L N G ++ V+
Sbjct: 189 RVAPSFGDLADMGYFGDLSGSSSFGE--TIVDPDLDEQYLTFSWWLLNEGWVSLSERVEE 246
Query: 146 AADEALKGKQLRDIFNTVVLHETFMQ---ILEVFMSMGSPHQWVDFLM-PQDIRFYKLVT 201
A + L E + +++ ++ SP ++ L+ P++ Y L
Sbjct: 247 AVRRVWDPVSPKAELGFDELSELIGRTQMLIDRPLNPSSPLNFLSQLLPPREQEEYVLAQ 306
Query: 202 ASGHDETTLSGATKFDELMVETRAVLSSAEYTSVVDMSFKAAVDALIDEMRVQSGGSLI- 260
+ G T L+ ET + S V++ + + +D++ V G +
Sbjct: 307 NPSDTAAPIVGPT-LRRLLDETADFIESPNAAEVIERLVHSGLSVFMDKLAVTFGATPAD 365
Query: 261 SGMPLAKLVPRVVQMSPSLLAE------------PS-NNRIIQVIRTIPEVELFFTLLYA 307
SG P ++P PS+LA P N I V+ + E+ F ++Y+
Sbjct: 366 SGSPYPVVLPTAKVKLPSILANMARQAGGMAQGSPGVENEYIDVMNQVQELTSFSAVVYS 425
Query: 308 NM 309
+
Sbjct: 426 SF 427
>sp|Q759H4|PEX3_ASHGO Peroxisomal biogenesis factor 3 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PEX3
PE=3 SV=1
Length = 446
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 56 KLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTA 101
K ELW LK+ S KL+ ++ M+ L R+Q+NIL R Y++TA
Sbjct: 129 KAELWQELKMRSAVKLLAVVYTTCMLLLLTRLQLNILARREYLETA 174
>sp|P95143|LLDD_MYCTU Putative L-lactate dehydrogenase [cytochrome] OS=Mycobacterium
tuberculosis GN=lldD PE=3 SV=2
Length = 414
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 120 DQQKFLASVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQILEVFMSM 179
D+ + +A V +A G M+ V D + G +LRD+ N + + + + V +M
Sbjct: 165 DRDRSMALVRRVAAAGFDTMLVTV----DVPVAGARLRDVRNGMSIPPA-LTLRTVLDAM 219
Query: 180 GSPHQWVDFLMPQDIRFYKL----VTASGHDETTLSGATKFDEL 219
G P W D L + + F L T + T + FD+L
Sbjct: 220 GHPRWWFDLLTTEPLAFASLDRWPGTVGEYLNTVFDPSLTFDDL 263
>sp|Q6BK00|PEX3_DEBHA Peroxisomal biogenesis factor 3 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=PEX3 PE=3 SV=1
Length = 420
Score = 32.7 bits (73), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 44/80 (55%)
Query: 56 KLELWDRLKILSFTKLVVALWAVTMVSLYIRVQVNILGRHLYIDTARGLGSSDLPEDADL 115
K ELW LKI + T+ + +++++ + L R+Q+NIL R Y+++A L + +
Sbjct: 140 KTELWKLLKIKTLTRTLTLMYSISGLLLLTRLQLNILARRSYLESAIILAGGKVNDTETS 199
Query: 116 IDRDDQQKFLASVDYLANYG 135
D +Q +L+ +L N G
Sbjct: 200 QDYFIEQSYLSLSWWLLNKG 219
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,419,216
Number of Sequences: 539616
Number of extensions: 3871440
Number of successful extensions: 11814
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 11782
Number of HSP's gapped (non-prelim): 27
length of query: 312
length of database: 191,569,459
effective HSP length: 117
effective length of query: 195
effective length of database: 128,434,387
effective search space: 25044705465
effective search space used: 25044705465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)