Query 021405
Match_columns 312
No_of_seqs 127 out of 198
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 03:40:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021405.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021405hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jgca_ a.25.1.1 (A:) Bacterio 21.1 37 0.0027 25.3 3.7 32 120-151 21-52 (160)
2 d2fkza1 a.25.1.1 (A:1-154) Bac 18.4 46 0.0034 24.3 3.7 34 120-153 21-54 (154)
3 d1yuza1 a.25.1.1 (A:23-157) Ni 17.3 42 0.0031 24.1 3.1 35 119-153 20-54 (135)
4 d1lkoa1 a.25.1.1 (A:2-147) Rub 16.3 54 0.0039 23.7 3.6 35 119-153 21-55 (146)
5 d1jhga_ a.4.12.1 (A:) Trp repr 14.1 47 0.0034 23.6 2.4 45 127-172 4-48 (101)
6 d1t0la_ c.77.1.1 (A:) NADP-dep 14.0 1.5E+02 0.011 25.6 6.6 34 123-156 332-372 (414)
7 d1c4za_ d.148.1.1 (A:) Ubiquit 12.8 1.8E+02 0.013 24.0 6.7 56 115-170 185-241 (350)
8 d1j30a_ a.25.1.1 (A:) Hypothet 12.6 68 0.0049 22.9 3.1 35 119-153 20-54 (141)
9 d1em8b_ c.126.1.1 (B:) DNA pol 12.4 44 0.0032 24.1 1.9 12 52-63 88-99 (110)
10 d1nf4a_ a.25.1.1 (A:) Bacterio 11.4 74 0.0054 23.6 3.1 33 120-152 23-55 (169)
No 1
>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}
Probab=21.15 E-value=37 Score=25.29 Aligned_cols=32 Identities=9% Similarity=0.269 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q 021405 120 DQQKFLASVDYLANYGMQAMISNVQAAADEAL 151 (312)
Q Consensus 120 ~eq~fLs~s~~ll~~G~~~l~~~V~~~V~~v~ 151 (312)
.-..|+..+||+-+.|+..+.+..+....+.+
T Consensus 21 a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~eE~ 52 (160)
T d1jgca_ 21 AISQYWVHFRLQEDWGLAKMAKKSREESIEEM 52 (160)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999988875
No 2
>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]}
Probab=18.42 E-value=46 Score=24.32 Aligned_cols=34 Identities=6% Similarity=0.218 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 021405 120 DQQKFLASVDYLANYGMQAMISNVQAAADEALKG 153 (312)
Q Consensus 120 ~eq~fLs~s~~ll~~G~~~l~~~V~~~V~~v~~~ 153 (312)
.-..|+..+||+=+.|+..+.+..+....+.+++
T Consensus 21 A~~~Y~~~a~~~~~~~~~~la~~f~~~a~eE~~H 54 (154)
T d2fkza1 21 AINQYFLHARMYEDWGLEKLGKHEYHESIDEMKH 54 (154)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999988877543
No 3
>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=17.31 E-value=42 Score=24.05 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 021405 119 DDQQKFLASVDYLANYGMQAMISNVQAAADEALKG 153 (312)
Q Consensus 119 ~~eq~fLs~s~~ll~~G~~~l~~~V~~~V~~v~~~ 153 (312)
..-.+|+.++.|.-..|.+.+.+..+....+..++
T Consensus 20 ~A~~~Yl~~A~~~~~~g~~~ia~~f~~~A~eE~~H 54 (135)
T d1yuza1 20 GAHAKYTAFAKAAREQGYEQIARLFEATAAAELIH 54 (135)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHCCChHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999998887543
No 4
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=16.34 E-value=54 Score=23.74 Aligned_cols=35 Identities=9% Similarity=0.059 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 021405 119 DDQQKFLASVDYLANYGMQAMISNVQAAADEALKG 153 (312)
Q Consensus 119 ~~eq~fLs~s~~ll~~G~~~l~~~V~~~V~~v~~~ 153 (312)
....+|+.++.|.-+.|++.+....+....+..++
T Consensus 21 ~A~~~Y~~~A~~a~~~g~~~ia~~f~~~A~eE~~H 55 (146)
T d1lkoa1 21 QARNRYNYFGGQAKKDGFVQISDIFAETADQEREH 55 (146)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999988877654
No 5
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli [TaxId: 562]}
Probab=14.07 E-value=47 Score=23.62 Aligned_cols=45 Identities=7% Similarity=-0.029 Sum_probs=35.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHHHH
Q 021405 127 SVDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFMQI 172 (312)
Q Consensus 127 ~s~~ll~~G~~~l~~~V~~~V~~v~~~~~lk~~ls~~~l~~l~~~i 172 (312)
++.| -+..|..+++.+..+.....-..=+++-+|.+|+..+-.++
T Consensus 4 m~~~-~~~~w~~f~~ll~~~~~~~~~~~fl~dLlT~~E~~~la~R~ 48 (101)
T d1jhga_ 4 MAEQ-RHQEWLRFVDLLKNAYQNDLHLPLLNLMLTPDEREALGTRV 48 (101)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHSCHHHHHHHHHHH
T ss_pred hhhh-hhhHHHHHHHHHHHccCHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4555 56889999999988887655555577889999999888765
No 6
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.97 E-value=1.5e+02 Score=25.65 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhh-------HHHHHHHHHHHHHHHhcCCCC
Q 021405 123 KFLASVDYLANYG-------MQAMISNVQAAADEALKGKQL 156 (312)
Q Consensus 123 ~fLs~s~~ll~~G-------~~~l~~~V~~~V~~v~~~~~l 156 (312)
..||.+.-|=|-| |.+..+.|+.||.+++.+=..
T Consensus 332 ~ILS~amML~~lg~~d~~~~l~~~A~~Ie~Av~~~l~~G~~ 372 (414)
T d1t0la_ 332 SIFAWTRGLAHRAKLDNNKELAFFANALEEVSIETIEAGFM 372 (414)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCCCC
Confidence 4677776555556 788999999999999877433
No 7
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.85 E-value=1.8e+02 Score=24.01 Aligned_cols=56 Identities=13% Similarity=0.247 Sum_probs=47.9
Q ss_pred CCChHHHHHHHHH-HHHHHHhhHHHHHHHHHHHHHHHhcCCCCCcccCHHHHHHHHH
Q 021405 115 LIDRDDQQKFLAS-VDYLANYGMQAMISNVQAAADEALKGKQLRDIFNTVVLHETFM 170 (312)
Q Consensus 115 ~~~~~~eq~fLs~-s~~ll~~G~~~l~~~V~~~V~~v~~~~~lk~~ls~~~l~~l~~ 170 (312)
.++.++-+.|+.. ..|.+++++..-++.+++...+++..-.++..++-+|++.++.
T Consensus 185 ~Vt~~n~~~yv~~~~~~~l~~~~~~~~~afr~Gf~~vip~~~l~~lf~~~eL~~li~ 241 (350)
T d1c4za_ 185 PITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPEEIELLIC 241 (350)
T ss_dssp BCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHhcCchhhhhcCCHHHHHHhhC
Confidence 3567888999985 6899999999999999999999998877877789888887764
No 8
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
Probab=12.56 E-value=68 Score=22.91 Aligned_cols=35 Identities=9% Similarity=0.110 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Q 021405 119 DDQQKFLASVDYLANYGMQAMISNVQAAADEALKG 153 (312)
Q Consensus 119 ~~eq~fLs~s~~ll~~G~~~l~~~V~~~V~~v~~~ 153 (312)
..-.+|+.++.|.-+.|.+.+....+....+...+
T Consensus 20 ~A~~~Y~~~a~~a~~~g~~~iA~~f~~~A~eE~~H 54 (141)
T d1j30a_ 20 MANRRYLYFAKRADEEGYPEIAGLLRSIAEGETAH 54 (141)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999988887643
No 9
>d1em8b_ c.126.1.1 (B:) DNA polymerase III psi subunit {Escherichia coli [TaxId: 562]}
Probab=12.43 E-value=44 Score=24.08 Aligned_cols=12 Identities=17% Similarity=0.769 Sum_probs=10.0
Q ss_pred CcchHHHHHHHH
Q 021405 52 SSSEKLELWDRL 63 (312)
Q Consensus 52 ~~~~K~eLW~eL 63 (312)
++..|.+||.++
T Consensus 88 n~~aKRaLWqQI 99 (110)
T d1em8b_ 88 NPTARAALWQQI 99 (110)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 377899999984
No 10
>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=11.45 E-value=74 Score=23.59 Aligned_cols=33 Identities=9% Similarity=0.214 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 021405 120 DQQKFLASVDYLANYGMQAMISNVQAAADEALK 152 (312)
Q Consensus 120 ~eq~fLs~s~~ll~~G~~~l~~~V~~~V~~v~~ 152 (312)
.-..|+.++||+-+.|...+.+..+....+..+
T Consensus 23 a~~~Y~~~a~~~~~~~~~~l~~~f~~~a~eE~~ 55 (169)
T d1nf4a_ 23 AIHQYMNQHYSLDDMDYGELAANMKLIAIDEMR 55 (169)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999988877654
Done!