BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021409
(312 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359479082|ref|XP_002272646.2| PREDICTED: uncharacterized protein LOC100259916 [Vitis vinifera]
Length = 481
Score = 256 bits (654), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 154/297 (51%), Positives = 190/297 (63%), Gaps = 22/297 (7%)
Query: 1 MATRQKLKGKLYHEENGEEEEKLKSAAAMSS-DDEEGNEDLSLKIVEKHMLMRAAKLDQD 59
M RQK K K+ H+E+ E +S +SS DDEE NEDLSLKIVEK M RA+K D +
Sbjct: 1 MGRRQKPKAKIDHQEDEEGANSSRSVIYLSSSDDEEANEDLSLKIVEKAM-KRASKTDHN 59
Query: 60 DSDSDVVLNDNTNTNTSDNSNNKNGGVEAVVPGPSGTTDDVIIEDVKSSDKKRIRVRKKK 119
D+ VL + +S ++ V GP+ T DD ++ K +K R K
Sbjct: 60 DA----VLAGRSAVIDLGSSPSEEAEVITDRSGPT-TDDDAEVKSKKKKSRKEKRANKN- 113
Query: 120 KKEADKIEIEDQSVIVRKEEQKVETADNGDEGVTTVEI-----SDNIVLRKLLRGPRYFD 174
IE ++++ + EE+K E+ D E + VE SDNIVLRKLLRGPRYFD
Sbjct: 114 ------IENQEKTDEILMEEKKGES-DKALEILKMVEPYPVEGSDNIVLRKLLRGPRYFD 166
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHR 234
PPD GW CYNCGEEGH AVNC ++VKRKKPCFVCGSLEH +QC K QDCFICKKGGHR
Sbjct: 167 PPDSGWGACYNCGEEGHNAVNC-ASVKRKKPCFVCGSLEHNAKQCMKGQDCFICKKGGHR 225
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK-VCLYFLVQYLAFCIM 290
AKDCP+KH+SG QN+++CLKCGDS HDMFSCRN YS +DLK + Y + C +
Sbjct: 226 AKDCPEKHRSGSQNSKICLKCGDSRHDMFSCRNDYSPEDLKEIQCYICKSFGHLCCI 282
>gi|356547869|ref|XP_003542327.1| PREDICTED: uncharacterized protein LOC100780476 [Glycine max]
Length = 529
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/289 (48%), Positives = 176/289 (60%), Gaps = 27/289 (9%)
Query: 1 MATRQKLKGKLYHEENGEEEEKLKSAAAM--SSDDEEGNEDLSLKIVEKHMLMRAAKLDQ 58
M ++K K EE ++ S + SSDD+E N+DLSLKI++K M MR AK
Sbjct: 1 MGRKEKQNTKAIEEERDQDNFNGASTPPLVFSSDDDEANQDLSLKIIKKAMRMRTAKHAP 60
Query: 59 DDSDSDVVLNDNTNTNTSDNSNNKNGGVEAVVPGPSGTTDDVIIEDVKSSDKKRIRVRKK 118
+D S + D + +GGV GPS D ++E K
Sbjct: 61 NDDVSSPF------SQKPDLALPPSGGVSD---GPSAIADSEVME--------------K 97
Query: 119 KKKEADKIEIEDQSVIVRKEEQKVETADNGDEGV-TTVEISDNIVLRKLLRGPRYFDPPD 177
KK K+E DQSV++ +E++ ET + + V EI DN+VLRKLLRGPRYFDPPD
Sbjct: 98 KKTAKLKVEAGDQSVVIAEEQEMEETINATENHVEGRPEIGDNMVLRKLLRGPRYFDPPD 157
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKD 237
W C+NCGEEGH AVNC SAVKRKKPC+VCG L H RQCSK QDCFICKKGGHRAKD
Sbjct: 158 NSWGACFNCGEEGHAAVNC-SAVKRKKPCYVCGCLGHNARQCSKVQDCFICKKGGHRAKD 216
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKVCLYFLVQYLA 286
CP+KH S ++ +CLKCG+SGHD+FSCRN YS DDLK ++ + L
Sbjct: 217 CPEKHTSTSKSIAICLKCGNSGHDIFSCRNDYSQDDLKEIQCYVCKRLG 265
>gi|255573261|ref|XP_002527559.1| cellular nucleic acid binding protein, putative [Ricinus communis]
gi|223533051|gb|EEF34811.1| cellular nucleic acid binding protein, putative [Ricinus communis]
Length = 497
Score = 246 bits (628), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 143/279 (51%), Positives = 187/279 (67%), Gaps = 7/279 (2%)
Query: 1 MATRQKLKGKLYHEENGEEEEKLKSAAAMSSDDEEGNEDLSLKIVEKHMLMRAAKLDQDD 60
MA +K KGK +E EEE+ + ++ DD E NEDLSLKIVEK +LMRAAKL Q+D
Sbjct: 1 MAKEEKRKGKFDDKE--EEEKAVIELSSGDEDDNEANEDLSLKIVEKALLMRAAKLAQND 58
Query: 61 SDSDVVLNDNTNTNTSDNSNNKNGGVEAVVPGPSGTTDDVIIEDVKSSDKKRIRVRKKKK 120
++ VVL+D+ + N + + GV V G V+ E K KK+I+ ++ +
Sbjct: 59 NEI-VVLDDDDDDEDDYNVSKNDSGVVGVSSGRDEAESVVVKEVKKKKKKKKIQKKEIEN 117
Query: 121 KEADKIEIEDQSVIVRKEEQKVETADNG--DEGVTT--VEISDNIVLRKLLRGPRYFDPP 176
+ + + E+ + K + VE + G DE V + VE++ N+VLRKLLRGPRYFD P
Sbjct: 118 QYVETVAKEEDRETIEKIVEVVENGEAGQLDENVDSHAVEVAQNMVLRKLLRGPRYFDSP 177
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
D GW TC+NCG+EGHMAVNC S K++KPCF+CG L+HGV+QCSK + C ICK GHR
Sbjct: 178 DSGWSTCFNCGKEGHMAVNCPSFEKKRKPCFLCGGLDHGVKQCSKERLCIICKSVGHRPN 237
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
CP+KHK G Q+++VCLKCGDSGHDMFSCRNSY LDDLK
Sbjct: 238 RCPEKHKGGPQSSKVCLKCGDSGHDMFSCRNSYPLDDLK 276
>gi|224132214|ref|XP_002328213.1| predicted protein [Populus trichocarpa]
gi|222837728|gb|EEE76093.1| predicted protein [Populus trichocarpa]
Length = 683
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 144/312 (46%), Positives = 193/312 (61%), Gaps = 24/312 (7%)
Query: 1 MATRQKLKGKLYHEENGEEEEKLKSAAAMSSDDEEGNEDLSLKIVEKHMLMRAAKLDQDD 60
M T++K K K+ E EE++ K +SSDDEE NEDLSLKIVEK +LM+AAKL +
Sbjct: 1 METKEKQKTKIEVIEEEEEKQSEKFVVEVSSDDEEANEDLSLKIVEKSLLMKAAKLTAN- 59
Query: 61 SDSDVVLNDNTNTNTSDNSNNKNGGVE----------AVVPGPSG-------TTDDVIIE 103
+ +VL+D+ + + S G VE A GPSG + I
Sbjct: 60 GNCLIVLDDDDDDDGSGGDGGDTGVVEVAATSSMEAVAAGVGPSGGKKRKKKVEKRINIS 119
Query: 104 DVKSSDKKRIRVRKKKK--KEADKIEIEDQSVIVRKEEQKVETADNGDEGVTTVEISDNI 161
V + ++ ++ ++ + + ++ IE S V E E ++G G T E S N+
Sbjct: 120 AVNAKEEGKVGTAEEAETVENSETIEKAGTSETVEAVEA-AELVESG--GATADEESVNV 176
Query: 162 VLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK 221
VLRKLLRGPRYFDPPD GW TCYNCGEEGHMAVNC + +K+ KPCFVCGSLEHG +QCSK
Sbjct: 177 VLRKLLRGPRYFDPPDSGWSTCYNCGEEGHMAVNCPTPMKKIKPCFVCGSLEHGAKQCSK 236
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK-VCLYF 280
+DCFICKK GHRAK+CPDK+ + Q++++CL CG+SGH+MFSC+ YS +DLK + Y
Sbjct: 237 GRDCFICKKSGHRAKNCPDKYNATPQSSKICLNCGESGHEMFSCKKDYSPNDLKEIQCYI 296
Query: 281 LVQYLAFCIMQS 292
+ C + S
Sbjct: 297 CKSFGHLCCVTS 308
>gi|356574813|ref|XP_003555539.1| PREDICTED: uncharacterized protein LOC100794448 [Glycine max]
Length = 533
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 143/286 (50%), Positives = 170/286 (59%), Gaps = 39/286 (13%)
Query: 1 MATRQKLKGKLYHEE------NGEEEEKLKSAAAMSSDDEEGNEDLSLKIVEKHMLMRAA 54
M ++K K EE NG L SSDD+E N+DLSLKIVEK M MRAA
Sbjct: 1 MGRKEKQNAKAIDEEHDVVNFNGASTPSL----VFSSDDDEANQDLSLKIVEKAMRMRAA 56
Query: 55 KLDQDDSDSDVVLNDNTNTNTSDNSNNKNGGVEAVVPGPSGTTDDVIIEDVKSSDKKRIR 114
K ND+ ++ S S E VP +DV+ D+ S+
Sbjct: 57 KH---------APNDDVSSPFSQKS-------ELAVP-----LNDVV-SDLPSAIADSEV 94
Query: 115 VRKKKKKEADKIEIEDQSVIVRKEEQKVETADNGDEGVTTVE-----ISDNIVLRKLLRG 169
KKK + + DQSV++ EEQ++E N E VE I N+VLRKLLRG
Sbjct: 95 TEKKKTAKLKREAAGDQSVVI-AEEQEMEETSNATENHEFVEGSPVLIGHNMVLRKLLRG 153
Query: 170 PRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
PRYFDPPD W C+NCGE+GH AVNC SA KRKKPC+VCG L H RQC+KAQDCFICK
Sbjct: 154 PRYFDPPDSSWGACFNCGEDGHAAVNC-SAAKRKKPCYVCGGLGHNARQCTKAQDCFICK 212
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
KGGHRAKDC +KH S ++ +CLKCG+SGHDMFSCRN YS DDLK
Sbjct: 213 KGGHRAKDCLEKHTSRSKSVAICLKCGNSGHDMFSCRNDYSPDDLK 258
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 11/77 (14%)
Query: 173 FDPPDRGWQTCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD------- 224
+ P D CY C GH+ VN A + C+ CG L H CS+ +D
Sbjct: 252 YSPDDLKEIQCYVCKRVGHLCCVNTDDATPGEISCYKCGQLGHTGLACSRLRDEITSGAT 311
Query: 225 ---CFICKKGGHRAKDC 238
CF C + GH A++C
Sbjct: 312 PSSCFKCGEEGHFAREC 328
>gi|449532848|ref|XP_004173390.1| PREDICTED: DNA-binding protein HEXBP-like, partial [Cucumis
sativus]
Length = 425
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/299 (47%), Positives = 185/299 (61%), Gaps = 22/299 (7%)
Query: 1 MATRQKLKGKLYHEENGEEEEKLKSAA-----AMSSDDEEGNEDLSLKIVEKHMLMRAAK 55
M R K K K E++ +E + LK+AA + SSDD+E NEDL+LKIVEK M +R+ K
Sbjct: 1 MGRRIKQK-KFKFEDDDDELQVLKTAAPKSTNSPSSDDDEANEDLTLKIVEKAMQLRSGK 59
Query: 56 LDQDDSDSDVVLNDNTNTNTSDNSN-NKNGGVEAVVPGPSGTTDDVIIEDVKSSD--KKR 112
L +D +N + S N + G +E V G D + +
Sbjct: 60 LV-----TDAGVNKDGKCEQSGNDDVYAVGAIELVSSSLEGAEVDAGTSKASADNIATAS 114
Query: 113 IRVRKKKKKEADKIEIEDQSVIVRKEEQKVETADNGDEGVTTVE-----ISDNIVLRKLL 167
+ KK+KK+ K+ E+++V+V E +K+ET + V VE +DN V RKLL
Sbjct: 115 KKTVKKRKKKVKKLGTEERNVVV-TEGEKIETTTGVIDQVDPVEPNLTGTTDNNVFRKLL 173
Query: 168 RGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
RGPRYFDPPD W TCYNCGEEGH AVNC+SA KRK+PCFVCGSLEH + CSKA+DCFI
Sbjct: 174 RGPRYFDPPDS-WGTCYNCGEEGHNAVNCKSA-KRKRPCFVCGSLEHNAKSCSKARDCFI 231
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKVCLYFLVQYLA 286
CKK GHRA CP+KHK+G + ++CLKCGDSGHDMFSC+N Y+ DDLK ++ Q
Sbjct: 232 CKKSGHRANACPEKHKNGSSSLRICLKCGDSGHDMFSCQNHYADDDLKKIQCYICQKFG 290
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 42/99 (42%), Gaps = 23/99 (23%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK-------------PCFVCGSLEHGVRQCSKAQDCFICK 229
CY CG+EGH A C SA K K PC+ CG H R+C+ +
Sbjct: 335 CYRCGDEGHFARECTSATKSGKRNREEASGAASPNPCYKCGEEGHFARECTSST------ 388
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
KGG R + SG + C +CG+ GH C S
Sbjct: 389 KGGKRILE----ETSGAASPSSCYRCGEQGHFARECAGS 423
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 19/105 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK----------AQDCFICKKGG 232
CY C + GH+ ++ C+ CG H CS+ + C+ C G
Sbjct: 283 CYICQKFGHLCCVNFTSDTSVVSCYKCGQTGHTGLSCSRLRGEASGAVSSSQCYRCGDEG 342
Query: 233 HRAKDCPDKHKSGFQNAQ---------VCLKCGDSGHDMFSCRNS 268
H A++C KSG +N + C KCG+ GH C +S
Sbjct: 343 HFARECTSATKSGKRNREEASGAASPNPCYKCGEEGHFARECTSS 387
>gi|224102939|ref|XP_002312862.1| predicted protein [Populus trichocarpa]
gi|222849270|gb|EEE86817.1| predicted protein [Populus trichocarpa]
Length = 640
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 134/295 (45%), Positives = 173/295 (58%), Gaps = 33/295 (11%)
Query: 27 AAMSSDDEEGNEDLSLKIVEKHMLMRAAKLDQDDSDSDVVLNDNTNTNTSDNSNNKNGGV 86
A +SSDDEE NEDLSLKIVEK +LMRAA+L ++ + VVL+D+ V
Sbjct: 26 AEVSSDDEEANEDLSLKIVEKSLLMRAARL-AENGNGFVVLDDDGGGGGGGRDGG---AV 81
Query: 87 EAVVP----------GPSGTTDDVIIEDVKSSDKKRIRVRKKKKKEADKIEIE--DQSVI 134
E +P G G ++ + + + + K++++ E E D + I
Sbjct: 82 EIELPSSMEAESASAGSRGVKKRKKRKNAEKKMEVSVVIAKEEEEVDKIEEAETVDNAEI 141
Query: 135 VRKEE--QKVETADNG----DEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGE 188
+ K E +KVE + D G VE S NIVLRKLLRGPRYFD D GW CYNCGE
Sbjct: 142 MEKAEKSEKVEVDEAAELVEDGGANAVEDSVNIVLRKLLRGPRYFDTLDSGWSNCYNCGE 201
Query: 189 EGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK----------AQDCFICKKGGHRAKDC 238
EGHMAVNC + K+ KPCFVCGSLEHG +QC+K QDCFICK+ GHRA+DC
Sbjct: 202 EGHMAVNCPTFTKKIKPCFVCGSLEHGAKQCTKVCEDITIQKLGQDCFICKESGHRARDC 261
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK-VCLYFLVQYLAFCIMQS 292
P+K+K Q++++CLKCG SGH+M SC N YS+DDLK + Y + C S
Sbjct: 262 PEKYKGTHQSSKICLKCGGSGHEMLSCMNDYSVDDLKEIQCYICKSFGHLCCFTS 316
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 19/114 (16%)
Query: 170 PRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEH---------GV 216
P + + + C CG GH ++C + ++ C++C S H G
Sbjct: 262 PEKYKGTHQSSKICLKCGGSGHEMLSCMNDYSVDDLKEIQCYICKSFGHLCCFTSGDDGS 321
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHK--SGFQNAQVCLKCGDSGHDMFSCRNS 268
RQ S C+ C + GH DC H+ S ++ C +CG+ GH C +S
Sbjct: 322 RQVS----CYRCGELGHTGLDCGRLHEEASMIESPSSCYRCGEGGHFARECTSS 371
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 13/70 (18%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
+CY CGE GH ++C G L C+ C +GGH A++C
Sbjct: 325 SCYRCGELGHTGLDC-------------GRLHEEASMIESPSSCYRCGEGGHFARECTSS 371
Query: 242 HKSGFQNAQV 251
+ G +N ++
Sbjct: 372 ARGGRRNREL 381
>gi|449439166|ref|XP_004137358.1| PREDICTED: cold shock domain-containing protein 3-like [Cucumis
sativus]
Length = 406
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 143/299 (47%), Positives = 185/299 (61%), Gaps = 22/299 (7%)
Query: 1 MATRQKLKGKLYHEENGEEEEKLKSAA-----AMSSDDEEGNEDLSLKIVEKHMLMRAAK 55
M R K K K E++ +E + LK+AA + SSDD+E NEDL+LKIVEK M +R+ K
Sbjct: 1 MGRRIKQK-KFKFEDDDDELQVLKTAAPKSTNSPSSDDDEANEDLTLKIVEKAMQLRSGK 59
Query: 56 LDQDDSDSDVVLNDNTNTNTSDNSN-NKNGGVEAVVPGPSGTTDDVIIEDVKSSD--KKR 112
L +D +N + S N + G +E V G D + +
Sbjct: 60 LV-----TDAGVNKDGKCEQSGNDDVYAVGAIELVSSSLEGAEVDAGTSKASADNIATAS 114
Query: 113 IRVRKKKKKEADKIEIEDQSVIVRKEEQKVETADNGDEGVTTVE-----ISDNIVLRKLL 167
+ KK+KK+ K+ E+++V+V +EE+ T D+ V VE +DN V RKLL
Sbjct: 115 KKTVKKRKKKVKKLGTEERNVVVTEEEKIETTTGVIDQ-VDPVEPNLTGTTDNNVFRKLL 173
Query: 168 RGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
RGPRYFDPPD W TCYNCGEEGH AVNC+SA KRK+PCFVCGSLEH + CSKA+DCFI
Sbjct: 174 RGPRYFDPPD-SWGTCYNCGEEGHNAVNCKSA-KRKRPCFVCGSLEHNAKSCSKARDCFI 231
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKVCLYFLVQYLA 286
CKK GHRA CP+KHK+G + ++CLKCGDSGHDMFSC+N Y+ DDLK ++ Q
Sbjct: 232 CKKSGHRANACPEKHKNGSSSLRICLKCGDSGHDMFSCQNHYADDDLKKIQCYICQKFG 290
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 21/124 (16%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK----------AQDCFICKKGG 232
CY C + GH+ ++ C+ CG H CS+ + C+ C G
Sbjct: 283 CYICQKFGHLCCVNFTSDTSVVSCYKCGQTGHTGLSCSRLRGEASGAVSSSQCYRCGDEG 342
Query: 233 HRAKDCPDKHKSGFQNAQ---------VCLKCGDSGHDMFSCRNSYSLDDLKVCLYFLVQ 283
H A++C KSG +N + C KCG+ GH C +S +D K +Y+
Sbjct: 343 HFARECTSSTKSGKRNREEASGAASPNPCYKCGEEGHFARECTSSTKVD--KRAIYWPQP 400
Query: 284 YLAF 287
L +
Sbjct: 401 ALLW 404
>gi|296084007|emb|CBI24395.3| unnamed protein product [Vitis vinifera]
Length = 441
Score = 220 bits (560), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 100/137 (72%), Positives = 112/137 (81%), Gaps = 2/137 (1%)
Query: 155 VEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEH 214
VE SDNIVLRKLLRGPRYFDPPD GW CYNCGEEGH AVNC ++VKRKKPCFVCGSLEH
Sbjct: 98 VEGSDNIVLRKLLRGPRYFDPPDSGWGACYNCGEEGHNAVNC-ASVKRKKPCFVCGSLEH 156
Query: 215 GVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
+QC K QDCFICKKGGHRAKDCP+KH+SG QN+++CLKCGDS HDMFSCRN YS +DL
Sbjct: 157 NAKQCMKGQDCFICKKGGHRAKDCPEKHRSGSQNSKICLKCGDSRHDMFSCRNDYSPEDL 216
Query: 275 K-VCLYFLVQYLAFCIM 290
K + Y + C +
Sbjct: 217 KEIQCYICKSFGHLCCI 233
>gi|297815456|ref|XP_002875611.1| hypothetical protein ARALYDRAFT_323091 [Arabidopsis lyrata subsp.
lyrata]
gi|297321449|gb|EFH51870.1| hypothetical protein ARALYDRAFT_323091 [Arabidopsis lyrata subsp.
lyrata]
Length = 556
Score = 197 bits (501), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 118/263 (44%), Positives = 149/263 (56%), Gaps = 42/263 (15%)
Query: 40 LSLKIVEKHMLMR--AAKLDQDDSDSDVVLNDNTNTNTSDNSNNKNGGVEAVVPGPSGTT 97
LSLKI+EK + R KLD D SDS VV N+ NGG V
Sbjct: 45 LSLKILEKALSRRDVGNKLDSDLSDSGVV-----------NTVMVNGGKSKVK------- 86
Query: 98 DDVIIEDVKSSDKKRIRVRKKKKKEADKIEIEDQ--------SVIVRKEEQKVETADNGD 149
KS K+++ K + I DQ V E+ +VE +D
Sbjct: 87 --------KSESNKKMKRNKLEAAHEFPIVWRDQDEEKVVEEVVKGEGEDNEVERSDE-- 136
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
T E S N+VL+KLLRG RYFDPPD GW +CY+CGE+GH + NC + KR+KPCF+C
Sbjct: 137 --PKTEETSSNLVLKKLLRGARYFDPPDAGWVSCYSCGEQGHTSFNCPTPTKRRKPCFIC 194
Query: 210 GSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY 269
GSLEHG +QCSK DC+ICKKGGHRAKDCPDK+K+G + A VCL+CGD GHDM C+ Y
Sbjct: 195 GSLEHGAKQCSKGHDCYICKKGGHRAKDCPDKYKNGSKGA-VCLRCGDFGHDMILCKYEY 253
Query: 270 SLDDLK-VCLYFLVQYLAFCIMQ 291
S +DLK + Y + C ++
Sbjct: 254 SQEDLKDIQCYVCKSFGHLCCVE 276
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
+CY CG+ GH + C R +R + S R+ A +C+ C + GH A++CP+
Sbjct: 286 SCYRCGQLGHTGLACGRHYEERNENDSSSLSFPENNRE---ASECYRCGEEGHFARECPN 342
Query: 241 KHK----SGFQNAQVCLKCGDSGHDMFSCRNS 268
G ++ +C +C +GH C NS
Sbjct: 343 SSSISTSQGRESQSLCYRCNGAGHFARECPNS 374
>gi|255634708|gb|ACU17716.1| unknown [Glycine max]
Length = 389
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 88/126 (69%), Positives = 100/126 (79%), Gaps = 1/126 (0%)
Query: 161 IVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS 220
+VLRKLLRGPRYFDPPD W C+NCGEEGH AVNC SAVKRKKPC+VCG L H RQCS
Sbjct: 1 MVLRKLLRGPRYFDPPDNSWGACFNCGEEGHAAVNC-SAVKRKKPCYVCGCLGHNARQCS 59
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKVCLYF 280
K QDCFICKK GHRAKDCP+KH S ++ +CLKCG+SGHD+FSCRN YS DDLK +
Sbjct: 60 KVQDCFICKKDGHRAKDCPEKHTSTSKSIAICLKCGNSGHDIFSCRNDYSQDDLKEIQCY 119
Query: 281 LVQYLA 286
+ + L
Sbjct: 120 VCKRLG 125
>gi|15229721|ref|NP_189945.1| zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
gi|9967508|emb|CAC05633.1| putative protein [Arabidopsis thaliana]
gi|20466716|gb|AAM20675.1| putative protein [Arabidopsis thaliana]
gi|25084296|gb|AAN72214.1| putative protein [Arabidopsis thaliana]
gi|332644290|gb|AEE77811.1| zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
Length = 551
Score = 188 bits (478), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 89/169 (52%), Positives = 118/169 (69%), Gaps = 6/169 (3%)
Query: 124 DKIEIEDQSVIVRKEEQKVETADNGDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTC 183
D+ ++ ++ V E+ +VE +D T E + N+VL+KLLRG RYFDPPD GW +C
Sbjct: 113 DEEKVVEEIVKGEGEDDEVERSDE----PKTEETASNLVLKKLLRGARYFDPPDAGWVSC 168
Query: 184 YNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHK 243
Y+CGE+GH + NC + KR+KPCF+CGSLEHG +QCSK DC+ICKK GHRAKDCPDK+K
Sbjct: 169 YSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKGHDCYICKKTGHRAKDCPDKYK 228
Query: 244 SGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK-VCLYFLVQYLAFCIMQ 291
+G + A VCL+CGD GHDM C+ YS +DLK V Y + C ++
Sbjct: 229 NGSKGA-VCLRCGDFGHDMILCKYEYSKEDLKDVQCYICKSFGHLCCVE 276
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 26/112 (23%)
Query: 183 CYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSK-------------------- 221
CY C GH+ V +++ C+ CG L H C +
Sbjct: 263 CYICKSFGHLCCVEPGNSLSWAVSCYRCGQLGHSGLACGRHYEESNENDSATPERLFNSR 322
Query: 222 -AQDCFICKKGGHRAKDCPDKHK----SGFQNAQVCLKCGDSGHDMFSCRNS 268
A +C+ C + GH A++CP+ G ++ +C +C SGH C NS
Sbjct: 323 EASECYRCGEEGHFARECPNSSSISTSHGRESQTLCYRCNGSGHFARECPNS 374
>gi|222616180|gb|EEE52312.1| hypothetical protein OsJ_34326 [Oryza sativa Japonica Group]
Length = 800
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/136 (61%), Positives = 97/136 (71%), Gaps = 6/136 (4%)
Query: 140 QKVETADNGDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSA 199
Q V T D D V +SDNIVLRKLLR PRYFDP + +TC+NCGEEGH+AVNC
Sbjct: 182 QSVLTEDGPD-----VPLSDNIVLRKLLRIPRYFDPGETLLETCFNCGEEGHVAVNC-PM 235
Query: 200 VKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
KRK+PCFVCG H +QC++ QDCFICKKGGH AKDCP+KH Q + CL+CG+SG
Sbjct: 236 EKRKRPCFVCGLFGHNSKQCTQGQDCFICKKGGHIAKDCPEKHNRNTQQSTFCLRCGESG 295
Query: 260 HDMFSCRNSYSLDDLK 275
HDMF C N Y DD+K
Sbjct: 296 HDMFGCANDYPRDDVK 311
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 37/95 (38%), Gaps = 13/95 (13%)
Query: 183 CYNCGEEGHMAVNC-----RSAVKRKKPCFVCGSLEH-----GVRQCSKAQDCFICKKGG 232
C CGE GH C R VK K C+VC H C K C+ C + G
Sbjct: 288 CLRCGESGHDMFGCANDYPRDDVKEIK-CYVCNQKGHLCCADFSDICPKEVSCYNCAQPG 346
Query: 233 HRAKDCPDKHK--SGFQNAQVCLKCGDSGHDMFSC 265
H C + + S +C KCG+ GH C
Sbjct: 347 HTGLGCAKQRREASTAATPTLCYKCGEEGHFARGC 381
>gi|218185703|gb|EEC68130.1| hypothetical protein OsI_36043 [Oryza sativa Indica Group]
Length = 492
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 113/266 (42%), Positives = 150/266 (56%), Gaps = 12/266 (4%)
Query: 14 EENGEEEEKLKSAAAMSSDDEE-GNEDLSLKIVEKHMLMRAAKLDQDDSDSDVVLNDNTN 72
EE G E+ + AA SDDEE GNEDLSL+IV + R + + +
Sbjct: 17 EEEGSPPERRRRAARSGSDDEEAGNEDLSLEIVARAARRRRRQREASAGFAADAF----- 71
Query: 73 TNTSDNSNNKNGGVEAVVPGPSGTTDDVIIEDVKSSDKKRIRVRKKKKKEADKIEIED-- 130
+S + +++ VE PS E K +KR + + + + D
Sbjct: 72 --SSGDEIDEDAVVELGEADPSSRKRRKEKEKKKRRKEKRKQRKGAPPEGSASTAAADKE 129
Query: 131 QSVIVRKEEQKVETADNG-DEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEE 189
+S + +E + TA++ E +SDNIVLRKLLR PRYFDP + +TC+NCGEE
Sbjct: 130 ESQVAGTQEAQTGTAESVLTEDGPDAPLSDNIVLRKLLRIPRYFDPGETLLETCFNCGEE 189
Query: 190 GHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNA 249
GH+AVNC KRK+PCFVCG H +QC++ QDCFICKKGGH AKDCP+KH Q +
Sbjct: 190 GHVAVNC-PMEKRKRPCFVCGLFGHNSKQCTQGQDCFICKKGGHIAKDCPEKHNRNTQQS 248
Query: 250 QVCLKCGDSGHDMFSCRNSYSLDDLK 275
CL+CG+SGHDMF C N Y DD+K
Sbjct: 249 TFCLRCGESGHDMFGCANDYPRDDVK 274
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 13/104 (12%)
Query: 183 CYNCGEEGHMAVNC-----RSAVKRKKPCFVCGSLEH-----GVRQCSKAQDCFICKKGG 232
C CGE GH C R VK K C+VC H C K C+ C + G
Sbjct: 251 CLRCGESGHDMFGCANDYPRDDVKEIK-CYVCNQKGHLCCADFSDICPKEVSCYNCAQPG 309
Query: 233 HRAKDCPDKHK--SGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
H C + + S +C KCG+ GH C + D +
Sbjct: 310 HTGLGCAKQRREVSTAATPTLCYKCGEEGHFARGCTKNTKSDRM 353
>gi|226495087|ref|NP_001142114.1| hypothetical protein [Zea mays]
gi|194707178|gb|ACF87673.1| unknown [Zea mays]
gi|414591597|tpg|DAA42168.1| TPA: hypothetical protein ZEAMMB73_148737 [Zea mays]
Length = 482
Score = 173 bits (439), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 105/259 (40%), Positives = 147/259 (56%), Gaps = 42/259 (16%)
Query: 32 DDEEGNEDLSLKIVEKHMLMRAAKLDQDDSDSDVVLNDNTNTNTSDNSNNKNGGVEAVVP 91
DDE GNEDLSL+I+ RA + + S V G ++
Sbjct: 35 DDEVGNEDLSLEII-----ARAQRKRRWASCGGVT------------------GFANLLS 71
Query: 92 GPSGTTDDVIIEDVKSSDKKR-------IRVRKKKKKEADK-------IEIEDQSVIVRK 137
SG +D ++E ++ + +R + RK+++KEA ++ E++ V +
Sbjct: 72 VSSGDDEDAVVELAEADEPRRKQKKRQHWKQRKRQRKEATAAAAAAAAVDEEEKEVGTTQ 131
Query: 138 EEQKVETADN--GDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVN 195
EEQ + TA++ ++GV S ++ LRKLLR PRYFDP + +TC+NC EEGH+A N
Sbjct: 132 EEQ-IGTAESVLTEDGVD-APTSHSMFLRKLLRIPRYFDPGETLLETCFNCSEEGHVAAN 189
Query: 196 CRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKC 255
C KRKKPCFVCG H +QC + QDCFICKKGGH AKDCPDKHK + +C++C
Sbjct: 190 C-PMGKRKKPCFVCGLFGHNAKQCKQGQDCFICKKGGHMAKDCPDKHKRNDHQSTLCIRC 248
Query: 256 GDSGHDMFSCRNSYSLDDL 274
G++GHDMF C N Y DD+
Sbjct: 249 GETGHDMFGCANDYPPDDI 267
>gi|147828626|emb|CAN73043.1| hypothetical protein VITISV_005152 [Vitis vinifera]
Length = 513
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 120/271 (44%), Positives = 153/271 (56%), Gaps = 24/271 (8%)
Query: 1 MATRQKLKGKLYHEENGEEEEKLKSAAAMSS-DDEEGNEDLSLKIVEKHMLMRAAKLDQD 59
M RQK K K+ H+E+ E +S +SS DB NEBLSLKIVEK M RA+K D +
Sbjct: 78 MGRRQKPKAKIDHQEDEEGANSSRSVIYLSSSDBXXANEBLSLKIVEKAM-KRASKTDHN 136
Query: 60 DSDSDVVLNDNTNTNTSDNSNNKNGGVEAVVPGPSGTTDDVIIEDVKSSDKKRIRVRKKK 119
D+ VL + +S ++ V GP+ T DD ++ K +K R K
Sbjct: 137 DA----VLAGRSAVIDLGSSPSEEAEVITDRSGPT-TDDDAEVKSKKKKSRKEKRANKN- 190
Query: 120 KKEADKIEIEDQSVIVRKEEQKVETADNGDEGVTTVEI-----SDNIVLRKLLRGPRYFD 174
IE ++++ + EE+K E+ D E + VE SDNIVLRKLLRGPRYFD
Sbjct: 191 ------IENQEKTDEILMEEKKGES-DKALEILKMVEPXPVEGSDNIVLRKLLRGPRYFD 243
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHR 234
PPD GW CYNCGEEGH AVNC ++VKRKKPCFVCGSLEH +QC K C+ICK GH
Sbjct: 244 PPDSGWGACYNCGEEGHNAVNC-ASVKRKKPCFVCGSLEHNAKQCMKEIQCYICKSFGHL 302
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C + +G C KCG GH +C
Sbjct: 303 C--CINYVDTGPIEPS-CYKCGQLGHTGLAC 330
>gi|413925352|gb|AFW65284.1| hypothetical protein ZEAMMB73_494862 [Zea mays]
Length = 515
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 107/260 (41%), Positives = 143/260 (55%), Gaps = 16/260 (6%)
Query: 32 DDEEGNEDLSLKIVEKHMLMRAAKLDQDDSDSDV-VLNDNTNTNTSDNSNNKNGGVEAVV 90
DDE GNEDLSL+IV RA + + +S V V D + +++D AVV
Sbjct: 35 DDELGNEDLSLEIV-----ARAQRKRRGESAGGVPVFADLLSVSSADEEG-------AVV 82
Query: 91 PGPSGTTDDVIIEDVKSSDKKRIRVRKKKKKEADKIEIEDQSVIVRKEEQKVETADNG-D 149
+ + +++ ++ + A D++ + EE + TA++
Sbjct: 83 ELDEADEPRRKQKKKQRRKQRKKHRKETTEAAAGAAVEVDENAVCSTEEGPIGTAESVLT 142
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E SDN+VLRKLLR PRYFDP + +TC+NC EEGH+A NC KRKKPCFVC
Sbjct: 143 ENGADAPASDNMVLRKLLRIPRYFDPGETLLETCFNCSEEGHVAANC-PLEKRKKPCFVC 201
Query: 210 GSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY 269
G H +QC++ QDCFICKKGGH AKDCPDKH+ + +CLKCG+ GHDMF C N Y
Sbjct: 202 GLFGHNAKQCTQGQDCFICKKGGHMAKDCPDKHRRNDHQSTLCLKCGEIGHDMFGCTNDY 261
Query: 270 SLDDL-KVCLYFLVQYLAFC 288
DD+ K+ Y Q C
Sbjct: 262 PPDDIEKIRCYVCNQKGHLC 281
>gi|357156364|ref|XP_003577431.1| PREDICTED: uncharacterized protein LOC100831383 isoform 1
[Brachypodium distachyon]
Length = 476
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 109/248 (43%), Positives = 149/248 (60%), Gaps = 17/248 (6%)
Query: 30 SSDDEEGNEDLSLKIVEKHMLMRAAKLDQDDSDSDVVLNDNTNTNTSDNSNNKNGGVEAV 89
S D++EGNEDLSL+IV + AA +D VVL +SD +++ VE
Sbjct: 29 SDDEDEGNEDLSLEIVARARRREAAGGQPGFADL-VVL-------SSDEEVDEDSVVEL- 79
Query: 90 VPGPSGTTDDVIIEDVKSSDKKRIRVRKKKKKEADKIEIEDQSVIVRKEEQKVETADNG- 148
G D + K K+R + ++K++ A +++ + +E + A+
Sbjct: 80 -----GEADPRRKQKKKKRRKERKKKQRKEEGGAGDSAAKEEPQVAGTQEGQTGIAEVVL 134
Query: 149 DEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
EG V +SDN VLRKLLR PRYFDP + +TC+NCGEEGH+A NC + KRKKPCF+
Sbjct: 135 TEGGVDVPLSDNTVLRKLLRIPRYFDPGETILETCFNCGEEGHVATNC-TMEKRKKPCFI 193
Query: 209 CGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHK-SGFQNAQVCLKCGDSGHDMFSCRN 267
CG H +QC++ QDCFICKKGGH AKDCPDKH + Q+ +CL+CG+ GHDMF+C N
Sbjct: 194 CGLFGHIAKQCTQGQDCFICKKGGHMAKDCPDKHNINTQQSTTLCLRCGEIGHDMFACTN 253
Query: 268 SYSLDDLK 275
Y DD+K
Sbjct: 254 DYPRDDVK 261
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 73/206 (35%), Gaps = 80/206 (38%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEG------------------- 190
EG V +SDN VLRKLLR PRYFDP + +TC+NCGEEG
Sbjct: 136 EGGVDVPLSDNTVLRKLLRIPRYFDPGETILETCFNCGEEGHVATNCTMEKRKKPCFICG 195
Query: 191 ----------------------HMAVNCR-----SAVKRKKPCFVCGSLEHGVRQCS--- 220
HMA +C + + C CG + H + C+
Sbjct: 196 LFGHIAKQCTQGQDCFICKKGGHMAKDCPDKHNINTQQSTTLCLRCGEIGHDMFACTNDY 255
Query: 221 -----KAQDCFICKKGGHR-----AKDCPD---------------------KHKSGFQNA 249
K C++CK+ GH + +CP + S
Sbjct: 256 PRDDVKEIKCYVCKQSGHLCCTDFSDNCPKEVTCYNCAQPGHTGLGCAKQRRETSVATTP 315
Query: 250 QVCLKCGDSGHDMFSCRNSYSLDDLK 275
+C KCG GH C N + D K
Sbjct: 316 TLCYKCGKEGHFARGCTNIANSDRFK 341
>gi|357493439|ref|XP_003617008.1| Cellular nucleic acid-binding protein [Medicago truncatula]
gi|355518343|gb|AES99966.1| Cellular nucleic acid-binding protein [Medicago truncatula]
Length = 638
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 84/155 (54%), Positives = 101/155 (65%), Gaps = 8/155 (5%)
Query: 155 VEISDNIVLRKLLRGPRYFDPP-DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE 213
V S+N VLRKLLRGPRYFDPP D W TCYNCGEEGH + NC +A KRKKPCFVCGSL
Sbjct: 254 VNTSNNTVLRKLLRGPRYFDPPSDNVWGTCYNCGEEGHASFNC-TAAKRKKPCFVCGSLS 312
Query: 214 HG-VRQCSKAQDCFICKKGGHRAKDCPDKHKSGF--QNAQVCLKCGDSGHDMFSCRNSYS 270
H ++C + C CK GHR+ DCP KH G ++ VCL+CG+SGHDMF C+N YS
Sbjct: 313 HNNGKKCIMGRYCSTCKLAGHRSSDCPKKHTGGSNSKSLTVCLRCGNSGHDMFLCKNDYS 372
Query: 271 LDDLK-VCLYFLVQYLAFCIMQSLLVSFKSLEFVC 304
DDLK + Y ++ C + + K EF C
Sbjct: 373 QDDLKEIQCYVCKKFGHLCCVNTTEAIPK--EFSC 405
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 20/113 (17%)
Query: 183 CYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD----------CFICKKG 231
CY C + GH+ VN A+ ++ C+ CG + H CS+ ++ C+ C +
Sbjct: 381 CYVCKKFGHLCCVNTTEAIPKEFSCYKCGQMGHIGWACSRLKNEATAATTPSSCYKCGEQ 440
Query: 232 GHRAKDCPD--KHKSGFQ-------NAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
GH A++C K S +Q C +CG+ GH C +S + + K
Sbjct: 441 GHFARECSSSVKASSRWQPENTDPATPSSCYRCGEEGHFSRECSSSVKVGNKK 493
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 39/196 (19%)
Query: 1 MATRQKLKGKLYHEENGEEEEKLKSAAAMSSDDEEGNEDLSLKIVEKHMLMRAAKLDQDD 60
M T++K K+ EE+ E S A+S DDEE N+DLSL+I++K +L RA +
Sbjct: 1 MGTKKKSAKKIELEED-ELNASNSSVTAISDDDEEANKDLSLEIIQKALLNRAI-----N 54
Query: 61 SDSDVVLNDNTNTNTSDNSNNKNGGVEAVV------------------------PGPSGT 96
+ VL+ T K V+AV+ G T
Sbjct: 55 PQNGAVLDTQTVKKKRKKKKTKIEVVDAVIVEEKEKEVVETIKAPEKVEHAEVETGMVDT 114
Query: 97 TDDVIIEDVKS-SDKKRIRVRKKKKKEADKIEIEDQSVIVRKEEQK-----VETADNGDE 150
+D+V++ + S S + I+ RKKKKK+ + EI+ + ++ E++K ++ + G+
Sbjct: 115 SDNVVLGNTASESHSEEIKTRKKKKKKKHESEIQTVNAVIVDEKEKEVVKTIKAPEKGEN 174
Query: 151 GVT---TVEISDNIVL 163
V V++SD++VL
Sbjct: 175 AVVETGMVDMSDSVVL 190
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 13/54 (24%)
Query: 182 TCYNCGEEGHMAVNCRSAVK---RKKP----------CFVCGSLEHGVRQCSKA 222
+CY CGE+GH A C S+VK R +P C+ CG H R+CS +
Sbjct: 433 SCYKCGEQGHFARECSSSVKASSRWQPENTDPATPSSCYRCGEEGHFSRECSSS 486
>gi|357156367|ref|XP_003577432.1| PREDICTED: uncharacterized protein LOC100831383 isoform 2
[Brachypodium distachyon]
Length = 464
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 108/247 (43%), Positives = 143/247 (57%), Gaps = 13/247 (5%)
Query: 30 SSDDEEGNEDLSLKIVEKHMLMRAAKLDQDDSDSDVVLNDNTNTNTSDNSNNKNGGVEAV 89
S D++EGNEDLSL+IV + AA +D VVL +SD +++ VE
Sbjct: 29 SDDEDEGNEDLSLEIVARARRREAAGGQPGFADL-VVL-------SSDEEVDEDSVVELG 80
Query: 90 VPGPSGTTDDVIIEDVKSSDKKRIRVRKKKKKEADKIEIEDQSVIVRKEEQKVETADNGD 149
P + K KK+ + A K E+ Q ++ + + +
Sbjct: 81 EADPRRKQ--KKKKRRKERKKKQRKEEGGAGDSAAKEEVYPQVAGTQEGQTGIAEVVLTE 138
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
GV V +SDN VLRKLLR PRYFDP + +TC+NCGEEGH+A NC + KRKKPCF+C
Sbjct: 139 GGV-DVPLSDNTVLRKLLRIPRYFDPGETILETCFNCGEEGHVATNC-TMEKRKKPCFIC 196
Query: 210 GSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHK-SGFQNAQVCLKCGDSGHDMFSCRNS 268
G H +QC++ QDCFICKKGGH AKDCPDKH + Q+ +CL+CG+ GHDMF+C N
Sbjct: 197 GLFGHIAKQCTQGQDCFICKKGGHMAKDCPDKHNINTQQSTTLCLRCGEIGHDMFACTND 256
Query: 269 YSLDDLK 275
Y DD+K
Sbjct: 257 YPRDDVK 263
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 79/193 (40%), Gaps = 68/193 (35%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
EG V +SDN VLRKLLR PRYFDP + +TC+NCGEEGH+A NC + KRKKPCF+C
Sbjct: 138 EGGVDVPLSDNTVLRKLLRIPRYFDPGETILETCFNCGEEGHVATNC-TMEKRKKPCFIC 196
Query: 210 -----------------------------------------------GSLEHGVRQCS-- 220
G + H + C+
Sbjct: 197 GLFGHIAKQCTQGQDCFICKKGGHMAKDCPDKHNINTQQSTTLCLRCGEIGHDMFACTND 256
Query: 221 ------KAQDCFICKKGGHR-----AKDCPD-------KHKSGFQNAQVCLKCGDSGHDM 262
K C++CK+ GH + +CP + S +C KCG GH
Sbjct: 257 YPRDDVKEIKCYVCKQSGHLCCTDFSDNCPKEGCAKQRRETSVATTPTLCYKCGKEGHFA 316
Query: 263 FSCRNSYSLDDLK 275
C N + D K
Sbjct: 317 RGCTNIANSDRFK 329
>gi|296089311|emb|CBI39083.3| unnamed protein product [Vitis vinifera]
Length = 686
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 102/157 (64%), Gaps = 7/157 (4%)
Query: 137 KEEQKVETADNGDE----GVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHM 192
+E+++V+T + D + +++I DNIVL+KLL+ PR FDPP+ W+ C+N EE
Sbjct: 504 REQKQVDTCKSVDTVKLFQIESIDIKDNIVLQKLLQAPRCFDPPESSWRMCHNSEEEAPT 563
Query: 193 AVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVC 252
AV C SA K+KKPCF+CGS +H C +A++CF+ ++ H + CP+K++ ++ +C
Sbjct: 564 AVAC-SAEKQKKPCFLCGSFKHSGNHCKQARNCFVYERSQH-TRSCPEKNQGNCPSSMIC 621
Query: 253 LKCGDSGHDMFSCRNSYSLDDLK-VCLYFLVQYLAFC 288
L+CG SGHDM CRN YS DDLK + Y +Y C
Sbjct: 622 LRCGGSGHDMLFCRNEYSSDDLKEIQCYVCKRYGHLC 658
>gi|164605537|dbj|BAF98603.1| CM0545.270.nc [Lotus japonicus]
Length = 259
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 91/137 (66%), Gaps = 11/137 (8%)
Query: 126 IEIEDQSVIVRKEEQKVETADNGDEGVTTVEISDNIVLRKLLRGPRYFDPP-DRGWQTCY 184
+ ++++V K QK+E ++ G TV++SDN+VLRKLLRGPRY+DPP D GW+TCY
Sbjct: 12 VLFQEEAVETIKGTQKMEPSEAG-----TVQMSDNVVLRKLLRGPRYYDPPADCGWETCY 66
Query: 185 NCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKS 244
NCGEEGH V C +A + KKPC++CGSL H ++C K C++CK GH C + +
Sbjct: 67 NCGEEGHATVKCAAAKELKKPCYLCGSLMHQAKRCKKEIQCYVCKSFGHLC--CAN--TT 122
Query: 245 GFQNAQV-CLKCGDSGH 260
G ++ C KCG +GH
Sbjct: 123 GSTPIEISCYKCGQTGH 139
>gi|224138186|ref|XP_002322751.1| predicted protein [Populus trichocarpa]
gi|222867381|gb|EEF04512.1| predicted protein [Populus trichocarpa]
Length = 265
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 97/162 (59%), Gaps = 10/162 (6%)
Query: 123 ADKIEIEDQSVIVRKEEQKVETADNGDEGVTT-------VEISDNIVLRKLLRGPRYFDP 175
A+ + E V K+++KV+ A + T VE +DNIVLR+LLR RYFD
Sbjct: 38 AETVPAETFIVNAMKQKRKVDRASKEMQEDTAKGMEREQVEFTDNIVLRQLLRRTRYFDG 97
Query: 176 PD-RGWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKAQDCFICKKGGH 233
P W+ C NCG+EGHM C+ ++KK CF+C SL+H R+C K + C +CK GH
Sbjct: 98 PSYNSWEMCSNCGQEGHMVCQCKMRKRKKKKLCFLCESLDHIGRRCRKNRYCSVCKGRGH 157
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
+A+ CP++ + + +CL+CG+SGHDMFSC Y DLK
Sbjct: 158 KARYCPERDQERSSHG-ICLQCGNSGHDMFSCTADYLPSDLK 198
>gi|15229296|ref|NP_189935.1| Zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
gi|7288027|emb|CAB81789.1| hypothetical protein [Arabidopsis thaliana]
gi|332644278|gb|AEE77799.1| Zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
Length = 260
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 94/194 (48%), Gaps = 32/194 (16%)
Query: 33 DEEGNEDLSLKIVEKHMLMRAA--KLDQDDSDSDVVLNDNTNTNTSDNSNNKNGGVEAVV 90
D+E NEDL LKI+EK R KLD D S + GV + V
Sbjct: 23 DDEANEDLRLKILEKAFSRRNVDNKLDSDLS--------------------FDPGVVSTV 62
Query: 91 PGPSGTTDDVIIEDVKSSDKKRIRVRKKKKKEADKIEIEDQSVIVRKEEQKVETADNGDE 150
G +++V K+ K EA EI V + E+ VE G+E
Sbjct: 63 MVNGGKSEEVKNSKSNKK-------MKRNKLEAAN-EIVTHCVERQDEDNMVEDVVRGEE 114
Query: 151 GVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCG 210
E + N V+ KLLRG RYFDP D GW TCY+CGE+ H+ V+C + +K CF+C
Sbjct: 115 --EDGETTSNSVMTKLLRGARYFDPLDAGWVTCYSCGEKDHITVSCPTLTNCRKSCFICA 172
Query: 211 SLEHGVRQCSKAQD 224
SLEHG RQC+K D
Sbjct: 173 SLEHGARQCTKVWD 186
>gi|115485975|ref|NP_001068131.1| Os11g0573200 [Oryza sativa Japonica Group]
gi|113645353|dbj|BAF28494.1| Os11g0573200, partial [Oryza sativa Japonica Group]
Length = 129
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 57/83 (68%), Gaps = 6/83 (7%)
Query: 140 QKVETADNGDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSA 199
Q V T D D V +SDNIVLRKLLR PRYFDP + +TC+NCGEEGH+AVNC
Sbjct: 22 QSVLTEDGPD-----VPLSDNIVLRKLLRIPRYFDPGETLLETCFNCGEEGHVAVNC-PM 75
Query: 200 VKRKKPCFVCGSLEHGVRQCSKA 222
KRK+PCFVCG H +QC++
Sbjct: 76 EKRKRPCFVCGLFGHNSKQCTQV 98
>gi|414591598|tpg|DAA42169.1| TPA: hypothetical protein ZEAMMB73_148737 [Zea mays]
Length = 226
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 72/212 (33%), Positives = 109/212 (51%), Gaps = 42/212 (19%)
Query: 32 DDEEGNEDLSLKIVEKHMLMRAAKLDQDDSDSDVVLNDNTNTNTSDNSNNKNGGVEAVVP 91
DDE GNEDLSL+I+ RA + + S V G ++
Sbjct: 35 DDEVGNEDLSLEII-----ARAQRKRRWASCGGVT------------------GFANLLS 71
Query: 92 GPSGTTDDVIIEDVKSSDKKR-------IRVRKKKKKEADK-------IEIEDQSVIVRK 137
SG +D ++E ++ + +R + RK+++KEA ++ E++ V +
Sbjct: 72 VSSGDDEDAVVELAEADEPRRKQKKRQHWKQRKRQRKEATAAAAAAAAVDEEEKEVGTTQ 131
Query: 138 EEQKVETADN--GDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVN 195
EEQ + TA++ ++GV S ++ LRKLLR PRYFDP + +TC+NC EEGH+A N
Sbjct: 132 EEQ-IGTAESVLTEDGVD-APTSHSMFLRKLLRIPRYFDPGETLLETCFNCSEEGHVAAN 189
Query: 196 CRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C KRKKPCFVCG H +QC + ++
Sbjct: 190 CPMG-KRKKPCFVCGLFGHNAKQCKQVGPPYL 220
>gi|359481085|ref|XP_002266540.2| PREDICTED: uncharacterized protein LOC100252970 [Vitis vinifera]
Length = 248
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 58/87 (66%), Gaps = 5/87 (5%)
Query: 137 KEEQKVETADNGDE----GVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHM 192
+E+++V+T + D + +++I DNIVL+KLL+ PR FDPP+ W+ C+N EE
Sbjct: 105 REQKQVDTCKSVDTVKLFQIESIDIKDNIVLQKLLQAPRCFDPPESSWRMCHNSEEEAPT 164
Query: 193 AVNCRSAVKRKKPCFVCGSLEHGVRQC 219
AV C SA K+KKPCF+CGS +H C
Sbjct: 165 AVAC-SAEKQKKPCFLCGSFKHSGNHC 190
>gi|412994131|emb|CCO14642.1| predicted protein [Bathycoccus prasinos]
Length = 421
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 159 DNIVLRKLLRGPRYFDPP-DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVR 217
+N +R++LR PRYFD + C+ CG+ GH C K +KPC +CG +H R
Sbjct: 135 ENTTVREILRLPRYFDDDFEAAAMRCFRCGKGGHREFECTLPAK-QKPCHLCGDFDHQAR 193
Query: 218 QCSKAQDCFICKKGGHRAKDCPDKHKSGF-QNAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
C K CF C GHR++DC ++ G Q + CL+CG SGH + C ++S DLK
Sbjct: 194 DCPKGL-CFNCLTPGHRSRDCEERRGIGRDQQSLCCLRCGRSGHVVEKCMFTFSEADLK 251
>gi|326505632|dbj|BAJ95487.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 480
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/303 (27%), Positives = 120/303 (39%), Gaps = 93/303 (30%)
Query: 14 EENGEEEEKLKSAAAMSSDDEE--GNEDLSLKIVEKHM-------------LMRAAKLDQ 58
++ G + A SDDE+ GNEDL+L+IV + ++ + ++
Sbjct: 16 DDAGTPSPARRPAPVPVSDDEDEAGNEDLTLEIVARARRREAAGGQPGFAEVLSLSSDEE 75
Query: 59 DDSDSDVVLNDNTNTNTSDNSNNKNGG---------------------VEAVVPGPSGTT 97
D D+ V L + + + K V G +GT
Sbjct: 76 VDEDAVVELGEADPSRRKEKKKKKQRRKERRKKQRKEDAAAAPEEEPQVAGAQEGQTGTA 135
Query: 98 DDVIIE---DVKSSDKKRIRVRKKKKKEADKIEIEDQSVIVRKEEQKVETADN-GDEGVT 153
+ V+I+ DV SD +R + + D E +ET N G+EG
Sbjct: 136 ESVLIQNGVDVPVSDNTVLRKLLRIPRYFDPGET------------ILETCFNCGEEGHV 183
Query: 154 TVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE 213
V P ++ + C+ CG GH A C
Sbjct: 184 AVNC-----------------PMEKRKKPCFVCGLFGHNAKQC----------------- 209
Query: 214 HGVRQCSKAQDCFICKKGGHRAKDCPDKH-KSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
++ Q+CFICKKGGH AKDCPDKH K Q +CL+CG++GHDMF C N Y LD
Sbjct: 210 ------TQGQECFICKKGGHMAKDCPDKHTKITQQCTALCLRCGETGHDMFGCSNDYPLD 263
Query: 273 DLK 275
D+K
Sbjct: 264 DVK 266
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 40/98 (40%), Gaps = 13/98 (13%)
Query: 183 CYNCGEEGHMAVNCRSA-----VKRKKPCFVCGSLEH-----GVRQCSKAQDCFICKKGG 232
C CGE GH C + VK K C+VC H CSK C+ C + G
Sbjct: 243 CLRCGETGHDMFGCSNDYPLDDVKEIK-CYVCKQNGHLCCTDFADSCSKEVTCYNCAQSG 301
Query: 233 HRAKDCPDKHK--SGFQNAQVCLKCGDSGHDMFSCRNS 268
H C + + S +C KCG+ GH C NS
Sbjct: 302 HTGLGCAKQRRETSVATTPTLCYKCGEDGHFARGCTNS 339
>gi|308807348|ref|XP_003080985.1| E3 ubiquitin ligase interacting with arginine methyltransferase
(ISS) [Ostreococcus tauri]
gi|116059446|emb|CAL55153.1| E3 ubiquitin ligase interacting with arginine methyltransferase
(ISS) [Ostreococcus tauri]
Length = 276
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Query: 153 TTVEISDNIVLRKLLRGPRYFDPP-DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGS 211
T + +N +R +LR PRYFD + C+ CG+ GH C K KKPC +CG
Sbjct: 27 TPRDDQENEEVRNILRQPRYFDDDYEAAALRCFRCGQGGHREAECELPAK-KKPCHLCGY 85
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGF-QNAQVCLKCGDSGHDMFSCRNSYS 270
H R C C+ C GH+++DCP SG A CL+CG SGH + C +
Sbjct: 86 KSHVARDCPHGL-CYNCLTPGHQSRDCPYVRGSGRDAQALCCLRCGKSGHVVADCVYRFD 144
Query: 271 LDDL 274
+DL
Sbjct: 145 ANDL 148
>gi|320580572|gb|EFW94794.1| zinc finger protein, putative [Ogataea parapolymorpha DL-1]
Length = 390
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKK-PCFVCGSLEHGVRQC-SKAQDCFICKKGGH 233
P R CYNCG+ GH+A C +A K C CG L H R C S C+ C K GH
Sbjct: 294 PLRPVSKCYNCGKIGHLAKGCSAARGGPKVTCHKCGGLNHFARDCQSGVVKCYACGKTGH 353
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+KDC NA+ C KCG+SGH
Sbjct: 354 ISKDCTSASGGSNFNAKTCYKCGESGH 380
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 25/85 (29%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
+TCY CG+ GH A C+ + C+ CK+ GH + DCP+
Sbjct: 232 RTCYKCGQVGHFADACQETERL----------------------CYNCKQPGHESGDCPE 269
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
++ + C C +GH C
Sbjct: 270 PKQT---TQKQCYNCKQTGHVQSEC 291
>gi|74835178|dbj|BAE44472.1| Vasa [Botryllus primigenus]
Length = 687
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 10/94 (10%)
Query: 183 CYNCGEEGHMAVNCRS--AVKRKKPCFVCGSLEHGVRQC------SKAQDCFICKKGGHR 234
CY CGEEGHM+ +C + R K CF CG H R C S+ + CF C + GH
Sbjct: 54 CYKCGEEGHMSRDCPNGGGSSRPKGCFKCGEEGHMSRDCPNGGGDSRPKGCFKCGEEGHM 113
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
++DCP+ G + C KCG+ GH C N
Sbjct: 114 SRDCPN--GGGDSRPKGCFKCGEEGHMSRDCPNG 145
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Query: 183 CYNCGEEGHMAVNCRSAV--KRKKPCFVCGSLEHGVRQC------SKAQDCFICKKGGHR 234
C+ CGEEGHM+ +C + R K CF CG H R C S+ + CF C + GH
Sbjct: 79 CFKCGEEGHMSRDCPNGGGDSRPKGCFKCGEEGHMSRDCPNGGGDSRPKGCFKCGEEGHM 138
Query: 235 AKDCPDKHKSGF------QNAQVCLKCGDSGH 260
++DCP+ + G Q C KCG+ GH
Sbjct: 139 SRDCPNGGEGGSRSQGDRQKGSGCFKCGEEGH 170
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 16/73 (21%)
Query: 183 CYNCGEEGHMAVNCRSAV--KRKKPCFVCGSLEHGVRQCS--------------KAQDCF 226
C+ CGEEGHM+ +C + R K CF CG H R C K CF
Sbjct: 104 CFKCGEEGHMSRDCPNGGGDSRPKGCFKCGEEGHMSRDCPNGGEGGSRSQGDRQKGSGCF 163
Query: 227 ICKKGGHRAKDCP 239
C + GH +++CP
Sbjct: 164 KCGEEGHFSRECP 176
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 206 CFVCGSLEHGVRQC------SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
C+ CG H R C S+ + CF C + GH ++DCP+ G + C KCG+ G
Sbjct: 54 CYKCGEEGHMSRDCPNGGGSSRPKGCFKCGEEGHMSRDCPN--GGGDSRPKGCFKCGEEG 111
Query: 260 HDMFSCRNSYSLDDLKVCL 278
H C N K C
Sbjct: 112 HMSRDCPNGGGDSRPKGCF 130
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 10/50 (20%)
Query: 183 CYNCGEEGHMAVNC--------RSAVKRKKP--CFVCGSLEHGVRQCSKA 222
C+ CGEEGHM+ +C RS R+K CF CG H R+C KA
Sbjct: 129 CFKCGEEGHMSRDCPNGGEGGSRSQGDRQKGSGCFKCGEEGHFSRECPKA 178
>gi|98986202|dbj|BAE94497.1| Vasa [Polyandrocarpa misakiensis]
Length = 705
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 10/88 (11%)
Query: 183 CYNCGEEGHMAVNCRS--AVKRKKPCFVCGSLEHGVRQCSK-----AQDCFICKKGGHRA 235
C+ CGEEGHM+ +C S + K CF CG H R+C ++ CF C + GH +
Sbjct: 97 CFKCGEEGHMSRDCPSNTSTGSSKACFKCGEEGHMSRECPNNNNNNSKACFKCGEEGHMS 156
Query: 236 KDCPDKHKS--GF-QNAQVCLKCGDSGH 260
++CP+ + S GF +++ C KCG+ GH
Sbjct: 157 RECPNNNSSKDGFGTSSRACFKCGEEGH 184
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 12/102 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK---RKKPCFVCGSLEHGVRQC------SKAQDCFICKKG 231
++C+ CG+EGHM+ +C S + K CF CG H R C ++ CF C +
Sbjct: 69 RSCFKCGQEGHMSRDCTSGASGDTQAKKCFKCGEEGHMSRDCPSNTSTGSSKACFKCGEE 128
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDD 273
GH +++CP+ + + N++ C KCG+ GH C N+ S D
Sbjct: 129 GHMSRECPNNNNN---NSKACFKCGEEGHMSRECPNNNSSKD 167
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 12/71 (16%)
Query: 181 QTCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQC-----------SKAQDCFIC 228
+ C+ CGEEGHM+ C + K CF CG H R+C + ++ CF C
Sbjct: 120 KACFKCGEEGHMSRECPNNNNNNSKACFKCGEEGHMSRECPNNNSSKDGFGTSSRACFKC 179
Query: 229 KKGGHRAKDCP 239
+ GH +++CP
Sbjct: 180 GEEGHMSRECP 190
>gi|240273725|gb|EER37244.1| F-box protein [Ajellomyces capsulatus H143]
gi|325094843|gb|EGC48153.1| F-box domain-containing protein [Ajellomyces capsulatus H88]
Length = 857
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 25/108 (23%)
Query: 181 QTCYNCGEEGHMAVNC---------------------RSAVKRKKPCFVCGSLEHGVRQC 219
Q CY CG+ GH+A NC R++ C+ CG H R C
Sbjct: 754 QECYKCGQVGHIARNCSQSGGYGSGGYGGATGGGYSGGYGGGRQQTCYSCGGYGHMARDC 813
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
++ Q C+ C + GH ++DCP + K +VC KC GH +C N
Sbjct: 814 TQGQKCYNCGEVGHVSRDCPTEAK----GERVCYKCKQPGHVQATCPN 857
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 43/122 (35%), Gaps = 50/122 (40%)
Query: 181 QTCYNCGEEGHMAVNCRSA-----------------VKRKKPCFVCGSLEHGVRQCS--- 220
+TCY CG+ GH++ +C SA + C+ CG + H R CS
Sbjct: 714 KTCYRCGQAGHISRDCTSAGSGDSYGNSGGYSGGGGAAGGQECYKCGQVGHIARNCSQSG 773
Query: 221 ----------------------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDS 258
+ Q C+ C GH A+DC Q C CG+
Sbjct: 774 GYGSGGYGGATGGGYSGGYGGGRQQTCYSCGGYGHMARDC--------TQGQKCYNCGEV 825
Query: 259 GH 260
GH
Sbjct: 826 GH 827
>gi|294948106|ref|XP_002785619.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239899598|gb|EER17415.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 141
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--QDCFICKKGG 232
P R CYNCG+ H+A +C + ++PCF CG + H R C++ + CF C + G
Sbjct: 39 PTGRRPMNCYNCGKPDHLARDCPNEQTNQRPCFKCGKVGHFARDCTEPDTRACFRCGQTG 98
Query: 233 HRAKDCPD--------KHKSGFQNAQVCLKCGDSGHDMFSCRN 267
H A+DCP+ + G + C KCG GH C N
Sbjct: 99 HLARDCPNEDTRPESERAPRGRSEGRNCFKCGKPGHLARDCPN 141
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 182 TCYNCGEEGHMAVNC------RSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKG 231
TC+ C E GH A +C R +R C+ CG +H R C Q CF C K
Sbjct: 17 TCFICNEPGHFARDCPQASSSRPTGRRPMNCYNCGKPDHLARDCPNEQTNQRPCFKCGKV 76
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH A+DC + + + C +CG +GH C N
Sbjct: 77 GHFARDCTEP------DTRACFRCGQTGHLARDCPN 106
>gi|318087050|gb|ADV40117.1| putative E3 ubiquitin ligase [Latrodectus hesperus]
Length = 175
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 181 QTCYNCGEEGHMAVNCR----SAVKRKKPCFVCGSLEHGVRQCSKAQD---CFICKKGGH 233
+TCY+CG+ GH++ +C RK C+ CG H R C +D C+ C GH
Sbjct: 60 KTCYSCGKSGHISRDCTQGGGGGSDRKMTCYTCGKPGHASRDCPNERDDRKCYSCGDTGH 119
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKVC 277
++DCP+ +G + VC +C +SGH +CRNS + C
Sbjct: 120 ISRDCPEGGNAGDNDDTVCYRCNESGHIARNCRNSRPSNKCYSC 163
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 14/87 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--------CFICKKGGH 233
TCY CG+ GH + +C + +K C+ CG H R C + + C+ C + GH
Sbjct: 88 TCYTCGKPGHASRDCPNERDDRK-CYSCGDTGHISRDCPEGGNAGDNDDTVCYRCNESGH 146
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
A++C + S C CG+ GH
Sbjct: 147 IARNCRNSRPS-----NKCYSCGEVGH 168
>gi|294874952|ref|XP_002767169.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239868618|gb|EEQ99886.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 141
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--QDCFICKKGG 232
P R CYNCG+ H+A +C + ++PCF CG + H R C++ + CF C + G
Sbjct: 39 PTGRRPMNCYNCGKPDHLARDCPNEQTNQRPCFKCGKVGHFARDCTEPDTRACFRCGETG 98
Query: 233 HRAKDCPD--------KHKSGFQNAQVCLKCGDSGHDMFSCRN 267
H A+DCP+ + G + C KCG GH C N
Sbjct: 99 HLARDCPNEDTRPESERAPRGRSEGRNCFKCGKPGHLARDCPN 141
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 16/96 (16%)
Query: 182 TCYNCGEEGHMAVNC------RSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKG 231
TC+ C E GH A +C R +R C+ CG +H R C Q CF C K
Sbjct: 17 TCFICNEPGHFARDCPQASSSRPTGRRPMNCYNCGKPDHLARDCPNEQTNQRPCFKCGKV 76
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH A+DC + + + C +CG++GH C N
Sbjct: 77 GHFARDCTEP------DTRACFRCGETGHLARDCPN 106
>gi|161752|gb|AAC37171.1| cnjB [Tetrahymena thermophila]
gi|737494|prf||1922371A cnjB gene
Length = 1748
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS----------KAQDCFICKKG 231
C+ C +EGHM+ +C + ++K CF CG H + C + CF C +
Sbjct: 1477 ACFKCNQEGHMSKDCPNQQQKKSGCFKCGEEGHFSKDCPNPQKQQQQKPRGGACFKCGEE 1536
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
GH +KDCP+ K Q C KC GH C NS
Sbjct: 1537 GHISKDCPNPQKQ--QQKNTCFKCKQEGHISKDCPNS 1571
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR--KKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHR 234
C+ CGEEGH++ +C + K+ K CF C H + C +Q+ CF C + GH
Sbjct: 1529 ACFKCGEEGHISKDCPNPQKQQQKNTCFKCKQEGHISKDCPNSQNSGGNKCFNCNQEGHM 1588
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+KDCP+ Q + C CG+ GH C
Sbjct: 1589 SKDCPNPS----QKKKGCFNCGEEGHQSREC 1615
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 183 CYNCGEEGHMAVNCRSAVK------RKKPCFVCGSLEHGVRQCSKAQ------DCFICKK 230
C+ CGEEGH + +C + K R CF CG H + C Q CF CK+
Sbjct: 1501 CFKCGEEGHFSKDCPNPQKQQQQKPRGGACFKCGEEGHISKDCPNPQKQQQKNTCFKCKQ 1560
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH +KDCP+ SG C C GH C N
Sbjct: 1561 EGHISKDCPNSQNSG---GNKCFNCNQEGHMSKDCPN 1594
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 183 CYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQCSKAQD----CFICKKGGHR 234
C+ CG+ GHMA +C + K+ CF C H + C Q CF C + GH
Sbjct: 1451 CFKCGKVGHMAKDCTEPQQQGRKQSGACFKCNQEGHMSKDCPNQQQKKSGCFKCGEEGHF 1510
Query: 235 AKDCPDKHKSGFQNAQ--VCLKCGDSGHDMFSCRNSYSLDDLKVCL 278
+KDCP+ K Q + C KCG+ GH C N C
Sbjct: 1511 SKDCPNPQKQQQQKPRGGACFKCGEEGHISKDCPNPQKQQQKNTCF 1556
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 16/74 (21%)
Query: 204 KPCFVCGSLEHGVRQCSKAQD--------CFICKKGGHRAKDCPDKH--KSGFQNAQVCL 253
K CF CG + H + C++ Q CF C + GH +KDCP++ KSG C
Sbjct: 1449 KGCFKCGKVGHMAKDCTEPQQQGRKQSGACFKCNQEGHMSKDCPNQQQKKSG------CF 1502
Query: 254 KCGDSGHDMFSCRN 267
KCG+ GH C N
Sbjct: 1503 KCGEEGHFSKDCPN 1516
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK 221
+ G C+NC +EGHM+ +C + ++KK CF CG H R+C+K
Sbjct: 1573 NSGGNKCFNCNQEGHMSKDCPNPSQKKKGCFNCGEEGHQSRECTK 1617
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+K + CF C K GH AKDC + + G + + C KC GH C N
Sbjct: 1446 NKGKGCFKCGKVGHMAKDCTEPQQQGRKQSGACFKCNQEGHMSKDCPN 1493
>gi|146182859|ref|XP_001025435.2| Zinc knuckle family protein [Tetrahymena thermophila]
gi|146143687|gb|EAS05190.2| Zinc knuckle family protein [Tetrahymena thermophila SB210]
Length = 1748
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS----------KAQDCFICKKG 231
C+ C +EGHM+ +C + ++K CF CG H + C + CF C +
Sbjct: 1477 ACFKCNQEGHMSKDCPNQQQKKSGCFKCGEEGHFSKDCPNPQKQQQQKPRGGACFKCGEE 1536
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
GH +KDCP+ K Q C KC GH C NS
Sbjct: 1537 GHISKDCPNPQKQ--QQKNTCFKCKQEGHISKDCPNS 1571
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR--KKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHR 234
C+ CGEEGH++ +C + K+ K CF C H + C +Q+ CF C + GH
Sbjct: 1529 ACFKCGEEGHISKDCPNPQKQQQKNTCFKCKQEGHISKDCPNSQNSGGNKCFNCNQEGHM 1588
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+KDCP+ Q + C CG+ GH C
Sbjct: 1589 SKDCPNPS----QKKKGCFNCGEEGHQSREC 1615
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 183 CYNCGEEGHMAVNCRSAVK------RKKPCFVCGSLEHGVRQCSKAQ------DCFICKK 230
C+ CGEEGH + +C + K R CF CG H + C Q CF CK+
Sbjct: 1501 CFKCGEEGHFSKDCPNPQKQQQQKPRGGACFKCGEEGHISKDCPNPQKQQQKNTCFKCKQ 1560
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH +KDCP+ SG C C GH C N
Sbjct: 1561 EGHISKDCPNSQNSG---GNKCFNCNQEGHMSKDCPN 1594
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 10/106 (9%)
Query: 183 CYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQCSKAQD----CFICKKGGHR 234
C+ CG+ GHMA +C + K+ CF C H + C Q CF C + GH
Sbjct: 1451 CFKCGKVGHMAKDCTEPQQQGRKQSGACFKCNQEGHMSKDCPNQQQKKSGCFKCGEEGHF 1510
Query: 235 AKDCPDKHKSGFQNAQ--VCLKCGDSGHDMFSCRNSYSLDDLKVCL 278
+KDCP+ K Q + C KCG+ GH C N C
Sbjct: 1511 SKDCPNPQKQQQQKPRGGACFKCGEEGHISKDCPNPQKQQQKNTCF 1556
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 16/74 (21%)
Query: 204 KPCFVCGSLEHGVRQCSKAQD--------CFICKKGGHRAKDCPDKH--KSGFQNAQVCL 253
K CF CG + H + C++ Q CF C + GH +KDCP++ KSG C
Sbjct: 1449 KGCFKCGKVGHMAKDCTEPQQQGRKQSGACFKCNQEGHMSKDCPNQQQKKSG------CF 1502
Query: 254 KCGDSGHDMFSCRN 267
KCG+ GH C N
Sbjct: 1503 KCGEEGHFSKDCPN 1516
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK 221
+ G C+NC +EGHM+ +C + ++KK CF CG H R+C+K
Sbjct: 1573 NSGGNKCFNCNQEGHMSKDCPNPSQKKKGCFNCGEEGHQSRECTK 1617
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+K + CF C K GH AKDC + + G + + C KC GH C N
Sbjct: 1446 NKGKGCFKCGKVGHMAKDCTEPQQQGRKQSGACFKCNQEGHMSKDCPN 1493
>gi|121702271|ref|XP_001269400.1| zinc knuckle domain protein [Aspergillus clavatus NRRL 1]
gi|119397543|gb|EAW07974.1| zinc knuckle domain protein [Aspergillus clavatus NRRL 1]
Length = 177
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 15/110 (13%)
Query: 169 GPRYFDPPDRGWQTCYNCGEEGHMAVNCR-----------SAVKRKKPCFVCGSLEHGVR 217
G Y P G Q CY CG+ GH+A NC R++ C+ CG H R
Sbjct: 72 GDNYGGPSTGGGQECYKCGQVGHIARNCSQGGNYGGGYGGGFGGRQQTCYSCGGFGHMAR 131
Query: 218 QCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C++ Q C+ C + GH ++DCP + K +VC KC GH +C N
Sbjct: 132 DCTQGQKCYNCGEVGHVSRDCPTEAK----GERVCYKCKQPGHVQAACPN 177
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 22/108 (20%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C A K K C+ CG H R+C ++
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSRECTVAPKEKS-CYRCGVAGHISRECPQSGAGDNYGGPST 80
Query: 223 ---QDCFICKKGGHRAKDCPDKHKSGFQNA-------QVCLKCGDSGH 260
Q+C+ C + GH A++C G Q C CG GH
Sbjct: 81 GGGQECYKCGQVGHIARNCSQGGNYGGGYGGGFGGRQQTCYSCGGFGH 128
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCS---KAQDCFICKKGGHR 234
G + C+NCG+ H A +C K+ P C+ CG H R+C+ K + C+ C GH
Sbjct: 6 GGRGCFNCGDASHQARDC---PKKGTPTCYNCGGQGHVSRECTVAPKEKSCYRCGVAGHI 62
Query: 235 AKDCPDKHKS------GFQNAQVCLKCGDSGHDMFSC 265
+++CP Q C KCG GH +C
Sbjct: 63 SRECPQSGAGDNYGGPSTGGGQECYKCGQVGHIARNC 99
>gi|260408201|gb|ACX37415.1| vasa [Botryllus schlosseri]
Length = 655
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 181 QTCYNCGEEGHMAVNCR--SAVKRKKPCFVCGSLEHGVRQC------SKAQDCFICKKGG 232
+ C+ CG+EGHM+ C R K CF CG H R+C S+ + CF C + G
Sbjct: 51 RACFKCGQEGHMSRECPEGGGGSRPKGCFKCGEEGHMSRECPSGGGDSRPKGCFKCGEEG 110
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
H +++CP G + C KCG+ GH C N
Sbjct: 111 HMSRECP-TGGGGDSRPKGCFKCGEEGHMSRECPN 144
>gi|407837810|gb|EKF99870.1| hypothetical protein TCSYLVIO_009208 [Trypanosoma cruzi]
Length = 503
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ C + GHMA C + R CF CGS H + C CF C GHR+ DCP K
Sbjct: 92 CFQCHQRGHMAPTC--PLTR---CFNCGSYGHSAQLCYSRPLCFHCSLAGHRSTDCPMKP 146
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K +VC +C + GH+M C
Sbjct: 147 K-----GRVCYRCKEPGHEMAEC 164
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C++C GH + +C K + C+ C H + +C++ C +C + GH CP+
Sbjct: 129 CFHCSLAGHRSTDCPMKPK-GRVCYRCKEPGHEMAECTQTALCHMCNQAGHFIAQCPEA- 186
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNS 268
VC C + GH +C S
Sbjct: 187 --------VCNLCNERGHTSSACLKS 204
>gi|255082406|ref|XP_002504189.1| predicted protein [Micromonas sp. RCC299]
gi|226519457|gb|ACO65447.1| predicted protein [Micromonas sp. RCC299]
Length = 938
Score = 64.3 bits (155), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA------QDCFICKKGGHR 234
+TC+ CG GH+A C +A ++ C VCG H R C + + C +C + GH
Sbjct: 644 RTCHKCGMPGHIARECPNAPGEQRTCHVCGEGGHIARDCPQGPSRPEERACHVCGESGHL 703
Query: 235 AKDCPDKH-----KSGFQNAQV----CLKCGDSGHDMFSCRN 267
A+DCP K G + A+ C +CG+ GH C N
Sbjct: 704 ARDCPQSTCHNCGKPGHRAAECPEARCRRCGEKGHMARDCVN 745
>gi|118401479|ref|XP_001033060.1| Zinc knuckle family protein [Tetrahymena thermophila]
gi|89287406|gb|EAR85397.1| Zinc knuckle family protein [Tetrahymena thermophila SB210]
Length = 352
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSKAQD-------CFICKKGG 232
C C E GH+ +C +S+ ++ C+ CGS EH ++ C K + CF+C+K G
Sbjct: 216 CLGCREVGHLVADCPNAKSSKAKQNICYNCGSNEHTLKDCKKKKTGALKFAFCFVCQKQG 275
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
H ++DCP+ K + C CGD H +C
Sbjct: 276 HISRDCPENDKGLYYKGGGCFICGDVHHTQANC 308
Score = 37.4 bits (85), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 183 CYNCGEEGHMAVNCR---SAVKRKKPCFVCGSLEHGVRQCS--------KAQDCFICKKG 231
CYNCG H +C+ + + CFVC H R C K CFIC
Sbjct: 242 CYNCGSNEHTLKDCKKKKTGALKFAFCFVCQKQGHISRDCPENDKGLYYKGGGCFICGDV 301
Query: 232 GHRAKDCP 239
H +CP
Sbjct: 302 HHTQANCP 309
>gi|407399797|gb|EKF28436.1| hypothetical protein MOQ_007815 [Trypanosoma cruzi marinkellei]
Length = 509
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ C + GHMA C + R CF CGS H + C CF C GHR+ DCP K
Sbjct: 98 CFQCHQRGHMAPTC--PLTR---CFNCGSYGHSSQLCYSRPLCFHCSLAGHRSTDCPMKP 152
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K +VC +C + GH+M C
Sbjct: 153 K-----GRVCYRCKEPGHEMAEC 170
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 37/95 (38%), Gaps = 20/95 (21%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP--------CFVCGSLEHGVRQC---SKAQDCFICKK 230
TC CG GH +C S KR + C CGS H C S++ +CF C +
Sbjct: 44 TCRACGRLGHFKEDCPSENKRARAEEDGEVSVCRSCGSSRHVKASCPLRSQSVECFQCHQ 103
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
GH A CP C CG GH C
Sbjct: 104 RGHMAPTCP---------LTRCFNCGSYGHSSQLC 129
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C++C GH + +C K + C+ C H + +C++ C +C + GH CP+
Sbjct: 135 CFHCSLAGHRSTDCPMKPK-GRVCYRCKEPGHEMAECTQTALCHMCNQAGHLIAQCPEA- 192
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
+C C + GH +C
Sbjct: 193 --------ICNLCHERGHTASAC 207
>gi|340507460|gb|EGR33421.1| universal minicircle sequence binding protein, putative
[Ichthyophthirius multifiliis]
Length = 724
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVK---RKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDC- 238
CY C +EGHMA +C +A + R CF+C H C++ C CK+ GH++KDC
Sbjct: 355 CYKCQQEGHMAKDCPNAQQYQARVMKCFLCKKEGHKSNDCTEPPLCMKCKEQGHQSKDCQ 414
Query: 239 -PDKHKSGFQNAQVCLKCGDSGHDMFSC 265
PD N +VC CGD GH C
Sbjct: 415 NPD-----HMNKRVCFNCGDEGHPTKGC 437
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 27/122 (22%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK---PCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHR 234
C+ CGEEGHM+ +C + R+K CF CG + H ++C + C+ C++ GH
Sbjct: 305 CFKCGEEGHMSRDCSNGNSREKKNNSCFNCGEITHMSKECPNPKKPRSIQCYKCQQEGHM 364
Query: 235 AKDCPDK-----------------HKSG-FQNAQVCLKCGDSGHDMFSCRNSYSLDDLKV 276
AKDCP+ HKS +C+KC + GH C+N ++ +V
Sbjct: 365 AKDCPNAQQYQARVMKCFLCKKEGHKSNDCTEPPLCMKCKEQGHQSKDCQNPDHMNK-RV 423
Query: 277 CL 278
C
Sbjct: 424 CF 425
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 29/102 (28%)
Query: 183 CYNCGEEGHMAVNCRSAVK---------------------RKKP-CFVCGSLEHGVRQCS 220
C+NCG+EGH C + R+KP CF C H C+
Sbjct: 424 CFNCGDEGHPTKGCPQNQQNSFRNNNDTNSTYQKPGGFQQREKPKCFKCQKEGHRAIDCT 483
Query: 221 KAQDCFICKKGGHRAKDC--PDKHKSGFQNAQVCLKCGDSGH 260
+ CF C + H +K+C P+ K +VC CGD H
Sbjct: 484 ELPYCFKCLQNIHSSKECDHPENSK-----KRVCFNCGDEKH 520
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Query: 197 RSAVKRKKPCFVCGSLEHGVRQCS-------KAQDCFICKKGGHRAKDCPDKHKSGFQNA 249
+ +RKK CF CG H R CS K CF C + H +K+CP+ K +
Sbjct: 296 QGGGERKKGCFKCGEEGHMSRDCSNGNSREKKNNSCFNCGEITHMSKECPNPKKP---RS 352
Query: 250 QVCLKCGDSGHDMFSCRNS 268
C KC GH C N+
Sbjct: 353 IQCYKCQQEGHMAKDCPNA 371
>gi|168009954|ref|XP_001757670.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691364|gb|EDQ77727.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 106
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 23/102 (22%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH------- 233
+TCYNCG++GH A C + R+KPC+VCG+ H C +A C+ICK+ GH
Sbjct: 1 ETCYNCGQQGHWAAEC-TKQAREKPCYVCGNFGHFSYDCPEALRCYICKRTGHMCCIDVS 59
Query: 234 -------RAKDCPDKHKSG--------FQNAQVCLKCGDSGH 260
C D SG ++N C +CG+ GH
Sbjct: 60 DASPTPVSCYRCGDLGHSGVVSISQDSYENQTACYRCGNEGH 101
>gi|71651603|ref|XP_814476.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70879451|gb|EAN92625.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 503
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ C + GHMA C + R CF CGS H + C CF C GHR+ DCP K
Sbjct: 92 CFQCHQRGHMAPTC--PLTR---CFNCGSYGHSSQLCYSRPLCFHCSLAGHRSTDCPMKP 146
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K +VC +C + GH+M C
Sbjct: 147 K-----GRVCYRCKEPGHEMAEC 164
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 37/95 (38%), Gaps = 20/95 (21%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP--------CFVCGSLEHGVRQC---SKAQDCFICKK 230
TC CG GH +C S KR + C CGS H C S++ +CF C +
Sbjct: 38 TCRACGRLGHFKEDCPSEKKRARAEEDGEVSVCRSCGSSRHVKASCPLRSQSVECFQCHQ 97
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
GH A CP C CG GH C
Sbjct: 98 RGHMAPTCP---------LTRCFNCGSYGHSSQLC 123
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C++C GH + +C K + C+ C H + +C++ C +C + GH CP+
Sbjct: 129 CFHCSLAGHRSTDCPMKPK-GRVCYRCKEPGHEMAECTQTALCHMCNQAGHLVAQCPEA- 186
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNS 268
VC C + GH +C S
Sbjct: 187 --------VCNLCHERGHTASACLKS 204
>gi|71654802|ref|XP_816013.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70881113|gb|EAN94162.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 503
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ C + GHMA C + R CF CGS H + C CF C GHR+ DCP K
Sbjct: 92 CFQCHQRGHMAPTC--PLTR---CFNCGSYGHSSQLCYSRPLCFHCSLAGHRSTDCPMKP 146
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K +VC +C + GH+M C
Sbjct: 147 K-----GRVCYRCKEPGHEMAEC 164
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 37/95 (38%), Gaps = 20/95 (21%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP--------CFVCGSLEHGVRQC---SKAQDCFICKK 230
TC CG GH +C S KR + C CGS H C S++ +CF C +
Sbjct: 38 TCRACGRLGHFKEDCPSEKKRARAEEDGEVSVCRSCGSSRHVKASCPLRSQSVECFQCHQ 97
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
GH A CP C CG GH C
Sbjct: 98 RGHMAPTCP---------LTRCFNCGSYGHSSQLC 123
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C++C GH + +C K + C+ C H + +C++ C +C + GH CP+
Sbjct: 129 CFHCSLAGHRSTDCPMKPK-GRVCYRCKEPGHEMAECTQTALCHMCNQAGHLVAQCPEA- 186
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCRNS 268
VC C + GH +C S
Sbjct: 187 --------VCNLCHERGHTASACLKS 204
>gi|400621674|gb|AFP87471.1| vasa-like protein, partial [Nematostella vectensis]
Length = 906
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRK--KPCFVCGSLEHGVRQCSKAQD-------C 225
P G + C+ CGEEGH A C + + + C CG H R+C C
Sbjct: 214 PSQGGARACHKCGEEGHFARECPNQPSQGGGRACHKCGEEGHFARECPNQPSQGGWCLTC 273
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C++ GH A+DCP++ G C KCG GH C N
Sbjct: 274 HKCREEGHYARDCPNQPSQGMGGGGACHKCGKEGHFSRECPN 315
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRK---KPCFVCGSLEHGVRQCSK------AQDCFICK 229
G C+ CG+EGH + +C + R+ + C CG H R+C A+ C C
Sbjct: 167 GGGACHRCGQEGHFSRDCPNPPTRQGNGRACHKCGEEGHFARECPNQPSQGGARACHKCG 226
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYS 270
+ GH A++CP++ G + C KCG+ GH C N S
Sbjct: 227 EEGHFARECPNQPSQG--GGRACHKCGEEGHFARECPNQPS 265
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 42/107 (39%), Gaps = 11/107 (10%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE---HGVRQCSKAQD------- 224
P G + C+ CGEEGH A C + + C C H R C
Sbjct: 239 PSQGGGRACHKCGEEGHFARECPNQPSQGGWCLTCHKCREEGHYARDCPNQPSQGMGGGG 298
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYS 270
C C K GH +++CP++ + C KCG GH C N S
Sbjct: 299 ACHKCGKEGHFSRECPNQDSQRIGGGRNCHKCGQEGHFSRECPNQTS 345
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 16/112 (14%)
Query: 175 PPDRGW-QTCYNCGEEGHMAVNCRS----AVKRKKPCFVCGSLEHGVRQCSK-------- 221
P GW TC+ C EEGH A +C + + C CG H R+C
Sbjct: 264 PSQGGWCLTCHKCREEGHYARDCPNQPSQGMGGGGACHKCGKEGHFSRECPNQDSQRIGG 323
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDD 273
++C C + GH +++CP++ Q + C KCG+ GH C D
Sbjct: 324 GRNCHKCGQEGHFSRECPNQTS---QGSGTCHKCGEVGHFARECPTGRGQSD 372
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 179 GWQTCYNCGEEGHMAVNCRSA----VKRKKPCFVCGSLEHGVRQCSK-----AQDCFICK 229
G C+ CG+EGH + C + + + C CG H R+C + C C
Sbjct: 296 GGGACHKCGKEGHFSRECPNQDSQRIGGGRNCHKCGQEGHFSRECPNQTSQGSGTCHKCG 355
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ GH A++CP +G + C KCG++GH C
Sbjct: 356 EVGHFARECP----TGRGQSDTCHKCGETGHYSREC 387
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKK-PCFVCGSLEHGVRQCSKAQD----CFICKKGGH 233
G + C+ CG+EGH + C + + C CG + H R+C + C C + GH
Sbjct: 323 GGRNCHKCGQEGHFSRECPNQTSQGSGTCHKCGEVGHFARECPTGRGQSDTCHKCGETGH 382
Query: 234 RAKDCPDKHKSGF 246
+++CP G
Sbjct: 383 YSRECPTLGNGGL 395
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKVC 277
C C + GH ++DCP+ + N + C KCG+ GH C N S + C
Sbjct: 171 CHRCGQEGHFSRDCPNP-PTRQGNGRACHKCGEEGHFARECPNQPSQGGARAC 222
>gi|304434516|dbj|BAJ15435.1| VASA-like gene [Mytilus galloprovincialis]
Length = 745
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 183 CYNCGEEGHMAVNCRSA-----VKRKKPCFVCGSLEHGVRQCSKAQ---------DCFIC 228
C+ CGE GHM+ C SA + CF C H R+C A+ +CF C
Sbjct: 148 CFKCGESGHMSRECPSAEQGGGGGGNRNCFKCNESGHMARECPNAEQGGGGGRSGNCFKC 207
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSL 271
++ GH A+DCP+ G C KC + GH C + L
Sbjct: 208 QESGHMARDCPNSDSKG----NACFKCNEGGHMARDCPKAEGL 246
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSA-----VKRKKPCFVCGSLEHGVRQC----SKAQDCFICKKG 231
+ C+ C E GHMA C +A R CF C H R C SK CF C +G
Sbjct: 174 RNCFKCNESGHMARECPNAEQGGGGGRSGNCFKCQESGHMARDCPNSDSKGNACFKCNEG 233
Query: 232 GHRAKDCP 239
GH A+DCP
Sbjct: 234 GHMARDCP 241
>gi|320040571|gb|EFW22504.1| zinc knuckle protein [Coccidioides posadasii str. Silveira]
gi|392862016|gb|EAS37384.2| zinc knuckle domain-containing protein [Coccidioides immitis RS]
Length = 199
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--------QDC 225
D P +G CYNCG EGH++ +C K +K C+ CG H R C +A Q+C
Sbjct: 19 DCPKKGSVICYNCGGEGHVSRDCNEPAK-EKSCYRCGLTGHISRDCPQAGESGGARGQEC 77
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ C + GH +++CP +SG Q C KCG GH +C
Sbjct: 78 YKCGQVGHISRECPQGGESGEARGQECYKCGQVGHISRNC 117
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 19/102 (18%)
Query: 181 QTCYNCGEEGHMAVNCRSAV---------------KRKKPCFVCGSLEHGVRQCSKAQDC 225
Q CY CG+ GH++ NC R C+ CG H R C++ Q C
Sbjct: 102 QECYKCGQVGHISRNCGQYSGYNGGGYNAGSYRYGNRPLTCYSCGGYGHRARDCTQGQKC 161
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ C + GH ++DC + K +VC KC GH +C N
Sbjct: 162 YNCGETGHVSRDCTTEGK----GERVCYKCKQPGHVQAACPN 199
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 31/103 (30%)
Query: 181 QTCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQCSKAQ------------- 223
Q CY CG+ GH++ C S R + C+ CG + H R C +
Sbjct: 75 QECYKCGQVGHISRECPQGGESGEARGQECYKCGQVGHISRNCGQYSGYNGGGYNAGSYR 134
Query: 224 ------DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C+ C GHRA+DC Q C CG++GH
Sbjct: 135 YGNRPLTCYSCGGYGHRARDC--------TQGQKCYNCGETGH 169
>gi|156082886|ref|XP_001608927.1| zinc knuckle domain containing protein [Babesia bovis T2Bo]
gi|154796177|gb|EDO05359.1| zinc knuckle domain containing protein [Babesia bovis]
Length = 200
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-------CFIC 228
P R +TC+ C + GH C +A CF CGS +H +R C + CFIC
Sbjct: 97 PKRVRKTCFKCRKRGHTLRECSAA--EVGICFRCGSTDHILRDCQDPDNGTLPFTSCFIC 154
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
KK GH A CPD K + N C CG H
Sbjct: 155 KKNGHIASQCPDNDKGIYPNGGCCFFCGSVTH 186
>gi|119496265|ref|XP_001264906.1| zinc knuckle domain protein [Neosartorya fischeri NRRL 181]
gi|119413068|gb|EAW23009.1| zinc knuckle domain protein [Neosartorya fischeri NRRL 181]
Length = 170
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 16/107 (14%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNC------------RSAVKRKKPCFVCGSLEHGVRQCS 220
++ G Q CY CG+ GH+A NC R++ C+ CG H R C+
Sbjct: 68 YNGAPSGGQECYKCGQVGHIARNCSQGGNYGGGFGHGGYGGRQQTCYSCGGFGHMARDCT 127
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
Q C+ C GH ++DCP + K +VC KC GH +C N
Sbjct: 128 HGQKCYNCGDVGHVSRDCPTEAK----GERVCYKCKQPGHVQAACPN 170
>gi|440632924|gb|ELR02843.1| hypothetical protein GMDG_05776 [Geomyces destructans 20631-21]
Length = 525
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSKAQ-------DCFICKKGG 232
C+NCGE+GHM +C R+ + C+ CG + H C Q C +C+ G
Sbjct: 45 CFNCGEQGHMKGDCPNPRAGGQLAGECYNCGEVGHNKADCPNPQVPREFTGTCRVCEAVG 104
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
HRA DCP ++C CGD GH + +C N +D
Sbjct: 105 HRASDCP------TAGPKLCKNCGDEGHTITACTNPRKID 138
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKG 231
DR TC+NC E GH +C + + C C H ++C++ + +C C +
Sbjct: 288 DRASVTCFNCNETGHRMRDCHKPREDRFACRNCKQSGHSSKECTEPRSAEGVECKNCNEM 347
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
GH ++DCP +G C CG GH C
Sbjct: 348 GHFSRDCP----TGGGGGGACHNCGQEGHRSKDC 377
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 12/95 (12%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNC----RSAVKRKK-PCFVCGSLEHGVRQCSKAQD----C 225
P RG C NC E GH+ +C R + R CF C H +R C K ++ C
Sbjct: 258 PVPRGIPKCNNCNEMGHITKSCPEEKREVLDRASVTCFNCNETGHRMRDCHKPREDRFAC 317
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
CK+ GH +K+C + + C C + GH
Sbjct: 318 RNCKQSGHSSKECTEPRSA---EGVECKNCNEMGH 349
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ--DCFICKKGGHRAKDCPD 240
C NC E GH + +C + C CG H + C++ + C C + GH +K+CP
Sbjct: 341 CKNCNEMGHFSRDCPTGGGGGGACHNCGQEGHRSKDCTEPRVPTCRNCDEKGHISKECPK 400
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCR 266
+ Q C C GH C+
Sbjct: 401 PRD--YSRIQ-CSNCQQMGHTKVRCK 423
>gi|427788709|gb|JAA59806.1| Putative protein self-association [Rhipicephalus pulchellus]
Length = 856
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 45/104 (43%), Gaps = 19/104 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---CFVCGSLEHGVRQCSKAQD------CFICKKGGH 233
C+ CGEEGHM+ +C +A +P CF CG H R C Q CF C + GH
Sbjct: 264 CFKCGEEGHMSRDCPTASSDDRPKRGCFNCGEDGHMSRDCPNPQQERRSKGCFKCGEEGH 323
Query: 234 RAKDCP----------DKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
++DCP D G + C KC GH C N
Sbjct: 324 MSRDCPNPDAGGGRGGDTSGEGGDRPRGCFKCQQEGHMAKDCTN 367
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 18/115 (15%)
Query: 179 GWQTCYNCGEEGHMAVNCRSA-----VKRKKPCFVCGSLEHGVRQCSKA----------- 222
G + C+ C +EGHM+ +C +A R + CF CG H R C A
Sbjct: 173 GGRACFKCNQEGHMSRDCPNADSGGGGGRGRGCFKCGEEGHMSRDCPNADSSSGGGRSGG 232
Query: 223 QDCFICKKGGHRAKDCP--DKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
+ CF C + GH ++DCP D G + C KCG+ GH C + S D K
Sbjct: 233 RGCFKCGQEGHMSRDCPNSDSSGGGGGGGRGCFKCGEEGHMSRDCPTASSDDRPK 287
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 23/85 (27%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAV--KRKKPCFVCGSLEHGVRQCS----------- 220
D P RG C+NCGE+GHM+ +C + +R K CF CG H R C
Sbjct: 284 DRPKRG---CFNCGEDGHMSRDCPNPQQERRSKGCFKCGEEGHMSRDCPNPDAGGGRGGD 340
Query: 221 -------KAQDCFICKKGGHRAKDC 238
+ + CF C++ GH AKDC
Sbjct: 341 TSGEGGDRPRGCFKCQQEGHMAKDC 365
>gi|299752665|ref|XP_001841159.2| DNA-binding protein hexbp [Coprinopsis cinerea okayama7#130]
gi|298409943|gb|EAU80696.2| DNA-binding protein hexbp [Coprinopsis cinerea okayama7#130]
Length = 173
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/96 (39%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC----------SKAQDC 225
P G TCYNCG EGH++ +C A K K C+ CG H R C S+ +C
Sbjct: 21 PKAGTPTCYNCGGEGHVSRDCTQAAKPKS-CYRCGEEGHLSRDCTSDNAAAGGVSRGGEC 79
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQ-VCLKCGDSGH 260
+ C K GH A+ CPD F +Q C CG GH
Sbjct: 80 YRCGKTGHLARSCPDSGYGSFGGSQKTCYTCGGVGH 115
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 53/119 (44%), Gaps = 23/119 (19%)
Query: 148 GDEGVTTVEI-SDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCR-----SAVK 201
G+EG + + SDN + RG CY CG+ GH+A +C S
Sbjct: 54 GEEGHLSRDCTSDNAAAGGVSRG-----------GECYRCGKTGHLARSCPDSGYGSFGG 102
Query: 202 RKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+K C+ CG + H R C + C+ C GH ++DCP K + C +CG GH
Sbjct: 103 SQKTCYTCGGVGHLSRDCVQGSKCYNCSSIGHISRDCPQPQK------RACYQCGQEGH 155
>gi|9955402|dbj|BAB12217.1| vasa homolog [Ciona savignyi]
Length = 770
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 183 CYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKAQD--------CFICKKGG 232
C+ CGEEGHM+ C R K CF CG H R+C K CF C + G
Sbjct: 108 CFKCGEEGHMSRECPQGGGGSRGKGCFKCGEEGHMSRECPKGGGGGGGGGRGCFKCGEEG 167
Query: 233 HRAKDCPDKHKSGFQN---AQVCLKCGDSGH 260
H +++CP SGF+ ++ C KCG+ GH
Sbjct: 168 HMSRECPKGGDSGFEGRSRSKGCFKCGEEGH 198
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 16/100 (16%)
Query: 183 CYNCGEEGHMAVNCR-------SAVKRKKPCFVCGSLEHGVRQCSK------AQDCFICK 229
C+ CGEEGHM+ C R K CF CG H R+C + CF C
Sbjct: 160 CFKCGEEGHMSRECPKGGDSGFEGRSRSKGCFKCGEEGHMSRECPQGGGGGRGSGCFKCG 219
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC-RNS 268
+ GH +++CP C KCG+ GH C RN+
Sbjct: 220 EEGHMSRECPQGGGG--GRGSGCFKCGEEGHMSRECPRNT 257
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 202 RKKPCFVCGSLEHGVRQCSKAQD------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKC 255
R K CF CG H R+C + CF C + GH +++CP G + C KC
Sbjct: 104 RSKGCFKCGEEGHMSRECPQGGGGSRGKGCFKCGEEGHMSRECPKGGGGGGGGGRGCFKC 163
Query: 256 GDSGH 260
G+ GH
Sbjct: 164 GEEGH 168
>gi|261205624|ref|XP_002627549.1| zinc knuckle transcription factor [Ajellomyces dermatitidis
SLH14081]
gi|239592608|gb|EEQ75189.1| zinc knuckle transcription factor [Ajellomyces dermatitidis
SLH14081]
Length = 473
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
C NCG+ GH A +C K CF CG H +C+K + C IC+K GH A +
Sbjct: 41 ACRNCGQSGHFARDCTEPRKATGACFNCGEEGHNKAECTKPRVFKGHCRICEKEGHPASE 100
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKV 276
CP+K A VC C + GH C + D +
Sbjct: 101 CPEK------PADVCKNCKEEGHKTMECTQNRKFDQHHI 133
>gi|239611240|gb|EEQ88227.1| zinc knuckle transcription factor [Ajellomyces dermatitidis ER-3]
Length = 477
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
C NCG+ GH A +C K CF CG H +C+K + C IC+K GH A +
Sbjct: 45 ACRNCGQSGHFARDCTEPRKATGACFNCGEEGHNKAECTKPRVFKGHCRICEKEGHPASE 104
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKV 276
CP+K A VC C + GH C + D +
Sbjct: 105 CPEK------PADVCKNCKEEGHKTMECTQNRKFDQHHI 137
>gi|443735051|gb|ELU18906.1| hypothetical protein CAPTEDRAFT_180220 [Capitella teleta]
Length = 651
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKAQD-------CFICKKGGHR 234
CY CGE+GH A C SA C CG H R+C KA C C + GH
Sbjct: 50 CYKCGEDGHFARECPSAGGGGGGGCHKCGEEGHFARECPKAGGGGGGGRGCHKCGEEGHF 109
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
A++CP SG C KCG+ GH C NS
Sbjct: 110 ARECPSAGSSGGGGGSGCRKCGEEGHFARECPNS 143
>gi|238490081|ref|XP_002376278.1| zinc knuckle domain protein (Byr3), putative [Aspergillus flavus
NRRL3357]
gi|83770972|dbj|BAE61105.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220698666|gb|EED55006.1| zinc knuckle domain protein (Byr3), putative [Aspergillus flavus
NRRL3357]
gi|391871140|gb|EIT80305.1| E3 ubiquitin ligase interacting with arginine methyltransferase
[Aspergillus oryzae 3.042]
Length = 190
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 179 GWQTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKG 231
G Q CY CG GH+A NC R+ C+ CG H R C+ Q C+ C +
Sbjct: 99 GGQECYKCGHVGHIARNCSQGGYSGDGYGGRQHTCYSCGGHGHMARDCTHGQKCYNCGEV 158
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH ++DCP + + +VC KC GH +C N
Sbjct: 159 GHVSRDCPSE----ARGERVCYKCKQPGHVQAACPN 190
>gi|357606571|gb|EHJ65114.1| putative zinc finger protein [Danaus plexippus]
Length = 420
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP--------CFVCGSLEHGVRQCSKAQD-------C 225
+ CYNC + GH +C +K P CF CGS EH +C +D C
Sbjct: 277 EVCYNCRKGGHNLSDC-PDLKSHIPGVDSAEGVCFKCGSTEHRQFECKVQKDKEFRFATC 335
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
FIC++ GH A+ CPD K + N C CGD H
Sbjct: 336 FICREPGHIARQCPDNPKGLYPNGGSCKLCGDVTH 370
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 221 KAQDCFICKKGGHRAKDCPD--KHKSGFQNAQ-VCLKCGDSGHDMFSCR 266
K + C+ C+KGGH DCPD H G +A+ VC KCG + H F C+
Sbjct: 275 KREVCYNCRKGGHNLSDCPDLKSHIPGVDSAEGVCFKCGSTEHRQFECK 323
>gi|291244816|ref|XP_002742290.1| PREDICTED: Vasa-like, partial [Saccoglossus kowalevskii]
Length = 679
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-----AQDCFICKKGGHRA 235
++C+ CGEEGHM+ C + CF CG H R+C K + CF C + GH +
Sbjct: 101 RSCFKCGEEGHMSRECPKGGGGGRNCFKCGEEGHMSRECPKGGGGGGRGCFKCGEDGHMS 160
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGH 260
++CP + G + C KCG+ GH
Sbjct: 161 RECP-QGGGGGGRGRGCFKCGEEGH 184
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 179 GWQTCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCSKAQD-------CFICKK 230
G + C+ CGEEGHM+ C + + CF CG H R+C + CF C +
Sbjct: 122 GGRNCFKCGEEGHMSRECPKGGGGGGRGCFKCGEDGHMSRECPQGGGGGGRGRGCFKCGE 181
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYS 270
GH ++DC + C KCG+SGH C N+ S
Sbjct: 182 EGHMSRDCTSGGLGK-SSGGGCFKCGESGHFSRECPNAES 220
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRK--------KPCFVCGSLEHGVRQCSK----AQDCFIC 228
+ C+ CGEEGHM+ C + CF CG H R+C K ++CF C
Sbjct: 70 RNCFKCGEEGHMSRECPKGGGGGGGGSGGGDRSCFKCGEEGHMSRECPKGGGGGRNCFKC 129
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+ GH +++CP K G + C KCG+ GH
Sbjct: 130 GEEGHMSRECP---KGGGGGGRGCFKCGEDGH 158
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSKAQD-------CFICKKGG 232
C+ CGE+GHM+ C R + CF CG H R C+ CF C + G
Sbjct: 150 CFKCGEDGHMSRECPQGGGGGGRGRGCFKCGEEGHMSRDCTSGGLGKSSGGGCFKCGESG 209
Query: 233 HRAKDCPDKHKSGFQNAQV--CLKCGDSGHDMFSCRN 267
H +++CP+ G C +CG+SGH C N
Sbjct: 210 HFSRECPNAESGGGGGGGGGNCFRCGESGHFAKDCTN 246
>gi|401420036|ref|XP_003874507.1| universal minicircle sequence binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490743|emb|CBZ26007.1| universal minicircle sequence binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 182
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 13/87 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGH 233
++CYNCGE GHM+ +C S K K C+ CGS EH R+C+ + C+ C GH
Sbjct: 93 RSCYNCGETGHMSRDCPSERKPKS-CYNCGSTEHLSRECTNEAKAGADTRSCYNCGGTGH 151
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
++DCP++ K + C CG + H
Sbjct: 152 MSRDCPNERK-----PKSCYNCGSTEH 173
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKD 237
TCY CGE GHM+ +C R+A R C+ CG H R C K + C+ C H +++
Sbjct: 72 TCYKCGEAGHMSRSCPRAAATRS--CYNCGETGHMSRDCPSERKPKSCYNCGSTEHLSRE 129
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C ++ K+G + + C CG +GH C N
Sbjct: 130 CTNEAKAG-ADTRSCYNCGGTGHMSRDCPN 158
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R ++CYNCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 109 PSERKPKSCYNCGSTEHLSRECTNEAKAGADTRSCYNCGGTGHMSRDCPNERKPKSCYNC 168
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 169 GSTEHLSRECPDRH 182
>gi|327348756|gb|EGE77613.1| zinc knuckle transcription factor [Ajellomyces dermatitidis ATCC
18188]
Length = 485
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
C NCG+ GH A +C K CF CG H +C+K + C IC+K GH A +
Sbjct: 41 ACRNCGQSGHFARDCTEPRKATGACFNCGEEGHNKAECTKPRVFKGHCRICEKEGHPASE 100
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKV 276
CP+K A VC C + GH C + D +
Sbjct: 101 CPEK------PADVCKNCKEEGHKTMECTQNRKFDQHHI 133
>gi|70991320|ref|XP_750509.1| zinc knuckle domain protein (Byr3) [Aspergillus fumigatus Af293]
gi|66848141|gb|EAL88471.1| zinc knuckle domain protein (Byr3), putative [Aspergillus fumigatus
Af293]
gi|159130982|gb|EDP56095.1| zinc knuckle domain protein (Byr3), putative [Aspergillus fumigatus
A1163]
Length = 190
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 16/107 (14%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCR------------SAVKRKKPCFVCGSLEHGVRQCS 220
++ G Q CY CG+ GH+A NC R++ C+ CG H R C+
Sbjct: 88 YNGAPSGGQECYKCGQVGHIARNCSQGGNYGGGFGHGGYGGRQQTCYSCGGFGHMARDCT 147
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
Q C+ C GH ++DCP + K +VC KC GH +C N
Sbjct: 148 HGQKCYNCGDVGHVSRDCPTEAK----GERVCYKCKQPGHVQAACPN 190
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 55/128 (42%), Gaps = 28/128 (21%)
Query: 174 DPPDRGWQTCYNCGE---EGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-------- 222
D P +G TCYNCG +GH++ C A K K C+ CG H R+CS+A
Sbjct: 32 DCPKKGTPTCYNCGATIGQGHVSRECTVAPKEKS-CYRCGVAGHISRECSQAGSGDNYNG 90
Query: 223 -----QDCFICKKGGHRAKDCPDKHKSGFQNA--------QVCLKCGDSGHDMFSCRNS- 268
Q+C+ C + GH A++C G Q C CG GH C +
Sbjct: 91 APSGGQECYKCGQVGHIARNCSQGGNYGGGFGHGGYGGRQQTCYSCGGFGHMARDCTHGQ 150
Query: 269 --YSLDDL 274
Y+ D+
Sbjct: 151 KCYNCGDV 158
>gi|294942030|ref|XP_002783361.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239895776|gb|EER15157.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 135
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 13/112 (11%)
Query: 170 PRYFDPPDRGW---QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--QD 224
PR FD R Q CYNCG+ H+A +C +PCF C + H R C A ++
Sbjct: 24 PRQFDDDSRARRRPQNCYNCGQPDHLARDCPKDQSNDRPCFKCQQVGHFARDCPSADTRN 83
Query: 225 CFICKKGGHRAKDCP--------DKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
CF C + GH A++CP + + G + C CG GH +CRNS
Sbjct: 84 CFRCGQSGHLARECPNEENNQDNNNNNRGGGGGRNCFHCGKPGHLARNCRNS 135
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 17/91 (18%)
Query: 181 QTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKAQD----CFICK 229
Q C+ C E GH A NC A +R + C+ CG +H R C K Q CF C+
Sbjct: 8 QACFICNETGHYARNCPRQFDDDSRARRRPQNCYNCGQPDHLARDCPKDQSNDRPCFKCQ 67
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+ GH A+DCP + + C +CG SGH
Sbjct: 68 QVGHFARDCPSA------DTRNCFRCGQSGH 92
>gi|241022874|ref|XP_002406044.1| cellular nucleic acid binding protein, putative [Ixodes scapularis]
gi|215491870|gb|EEC01511.1| cellular nucleic acid binding protein, putative [Ixodes scapularis]
Length = 239
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 49/96 (51%), Gaps = 10/96 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAV----KRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGG 232
C+ CGEEGHM+ +C SA + K+ CF CG H R C +++ CF C + G
Sbjct: 19 ACFKCGEEGHMSRDCPSAGGDGDRPKRGCFNCGEDGHMSRDCPNPKQERSKGCFKCGEEG 78
Query: 233 HRAKDCPDKHKSGFQN-AQVCLKCGDSGHDMFSCRN 267
H ++DCP + G + + C KC GH C N
Sbjct: 79 HMSRDCPTAGEGGDSDRPKGCFKCQQEGHMAKDCTN 114
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 10/72 (13%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA---------QDCF 226
DR + C+NCGE+GHM+ +C + + R K CF CG H R C A + CF
Sbjct: 41 DRPKRGCFNCGEDGHMSRDCPNPKQERSKGCFKCGEEGHMSRDCPTAGEGGDSDRPKGCF 100
Query: 227 ICKKGGHRAKDC 238
C++ GH AKDC
Sbjct: 101 KCQQEGHMAKDC 112
>gi|294882220|ref|XP_002769652.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239873234|gb|EER02370.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 144
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--QDCFICKKGG 232
P R CYNCG+ H+A +C + ++PCF CG + H R C+ + CF C + G
Sbjct: 41 PTGRRPMNCYNCGKPDHLARDCPNEQTNQRPCFKCGQVGHFARDCTAPDTRACFRCGETG 100
Query: 233 HRAKDCP--------DKHKSG-FQNAQVCLKCGDSGHDMFSCRN 267
H A+DCP D+ G + C KCG GH C N
Sbjct: 101 HLARDCPNEDTRPESDRAPRGRGAEGRNCFKCGQPGHFARDCPN 144
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 21/98 (21%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP-------CFVCGSLEHGVRQCSKAQ----DCFICKKG 231
C+ C E GH A +C A +P C+ CG +H R C Q CF C +
Sbjct: 19 CFICNEPGHFARDCPQATSSSRPTGRRPMNCYNCGKPDHLARDCPNEQTNQRPCFKCGQV 78
Query: 232 GHRAKDC--PDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH A+DC PD + C +CG++GH C N
Sbjct: 79 GHFARDCTAPD--------TRACFRCGETGHLARDCPN 108
>gi|294873524|ref|XP_002766658.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239867715|gb|EEQ99375.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 144
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 11/104 (10%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--QDCFICKKGG 232
P R CYNCG+ H+A +C + ++PCF CG + H R C+ + CF C + G
Sbjct: 41 PTGRRPMNCYNCGKPDHLARDCPNEQTNQRPCFKCGQVGHFARDCTAPDTRACFRCGETG 100
Query: 233 HRAKDCP--------DKHKSG-FQNAQVCLKCGDSGHDMFSCRN 267
H A+DCP D+ G + C KCG GH C N
Sbjct: 101 HLARDCPNEDTRPESDRAPRGRGAEGRNCFKCGQPGHFARDCPN 144
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 21/98 (21%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP-------CFVCGSLEHGVRQCSKAQ----DCFICKKG 231
C+ C E GH A +C A +P C+ CG +H R C Q CF C +
Sbjct: 19 CFICNEPGHFARDCPQASSSTRPTGRRPMNCYNCGKPDHLARDCPNEQTNQRPCFKCGQV 78
Query: 232 GHRAKDC--PDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH A+DC PD + C +CG++GH C N
Sbjct: 79 GHFARDCTAPD--------TRACFRCGETGHLARDCPN 108
>gi|409050450|gb|EKM59927.1| hypothetical protein PHACADRAFT_250735 [Phanerochaete carnosa
HHB-10118-sp]
Length = 697
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 49/107 (45%), Gaps = 17/107 (15%)
Query: 171 RYFDPPDRGWQT------CYNCGEEG-HMAVNCRSAVKRKKPCFVCGSL-EHGVRQCSKA 222
RYFD P G + C CG EG H NC + C CG EHG R C +
Sbjct: 298 RYFDDPADGTEPKTAKIVCKKCGAEGDHKTWNCPVII-----CLTCGVRNEHGTRSCPIS 352
Query: 223 QDCFICKKGGHRAKDCPDKH----KSGFQNAQVCLKCGDSGHDMFSC 265
+ CF C GH +DCP+++ + G N C +CG S H + C
Sbjct: 353 KVCFTCGMKGHINRDCPNRYAGRARMGGSNFDDCDRCGSSLHQINEC 399
>gi|198401785|gb|ACH87542.1| Air1 domain containing protein [Platynereis dumerilii]
Length = 489
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 73/171 (42%), Gaps = 29/171 (16%)
Query: 111 KRIRVRK--KKKKEADKIEIEDQSVIVRKEEQKVETADNGDEGVTTVEISDNIVLRKLLR 168
KRI++ K K KKE + I V +N G+++ E+
Sbjct: 290 KRIQLVKPFKSKKEPESSPIPSP---VGSPHSAPTPFENLGSGISSSEVPK--------- 337
Query: 169 GPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD---- 224
PR + P +TC+ CG GH+A +C + +R CF C + H QCS +
Sbjct: 338 -PRPWKP-----RTCFECGGAGHLAPHCPTRHQRSIHCFECEGVGHPAPQCSSRRHVSII 391
Query: 225 CFICKKGGHRAKDC-----PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYS 270
C C+ GH AK+C P H S +N +C + GH +C +S S
Sbjct: 392 CHQCRGRGHIAKNCAFSCGPASHFSPRRNITRGYECWNYGHIARNCIDSTS 442
>gi|378732167|gb|EHY58626.1| cellular nucleic acid-binding protein [Exophiala dermatitidis
NIH/UT8656]
Length = 464
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--QDCFICKKG 231
D P+R QTC NCG E HMA C + K+ C CG +H R+C A Q C IC
Sbjct: 310 DCPNREKQTCRNCGAEDHMARECPD--REKRTCRKCGEEDHIARECPNAPKQTCNICDAE 367
Query: 232 GHRAKDCPDKHKSGFQNAQ-----VCLKCGDSGHDMFSC 265
H AKDCP K + G + + VC C GH C
Sbjct: 368 DHFAKDCPKKGEPGLRPRRDWSQVVCSLCEQKGHGRARC 406
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 12/95 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
C NCG+EGH A C ++ CF CG H +C+ + +C C + GH D
Sbjct: 33 ACRNCGQEGHFAREC-PEPRKMGACFNCGEEGHSKAECTAPRKFKGECRNCGEEGHMISD 91
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
CP + C C GH+ C+N +D
Sbjct: 92 CP-------TYVEKCKNCQQEGHNAIDCKNPMMMD 119
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 24/118 (20%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKK----PCFVCGSLEHGVRQCSK-----AQDC 225
P DRG C NC + GH +C ++ C++CG H VR C++ + C
Sbjct: 239 PLDRGVDLCRNCEKVGHKTKDCPEEKMVREQLIVTCYLCGEQGHRVRDCTQERKKPGRAC 298
Query: 226 FICKKGGHRAKDCPDKHKSGFQNA---------------QVCLKCGDSGHDMFSCRNS 268
IC+ H AKDCP++ K +N + C KCG+ H C N+
Sbjct: 299 RICEAEDHIAKDCPNREKQTCRNCGAEDHMARECPDREKRTCRKCGEEDHIARECPNA 356
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-SKAQDCFICKKGGH 233
P R C+NCGEEGH C + K K C CG H + C + + C C++ GH
Sbjct: 48 PEPRKMGACFNCGEEGHSKAECTAPRKFKGECRNCGEEGHMISDCPTYVEKCKNCQQEGH 107
Query: 234 RAKDC 238
A DC
Sbjct: 108 NAIDC 112
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD----------- 224
PDR +TC CGEE H+A C +A K+ C +C + +H + C K +
Sbjct: 333 PDREKRTCRKCGEEDHIARECPNAPKQT--CNICDAEDHFAKDCPKKGEPGLRPRRDWSQ 390
Query: 225 --CFICKKGGHRAKDCPDKHKSGFQNAQV 251
C +C++ GH CP + N +
Sbjct: 391 VVCSLCEQKGHGRARCPQAEGTAAANGET 419
>gi|67537882|ref|XP_662715.1| hypothetical protein AN5111.2 [Aspergillus nidulans FGSC A4]
gi|40743102|gb|EAA62292.1| hypothetical protein AN5111.2 [Aspergillus nidulans FGSC A4]
Length = 176
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 179 GWQTCYNCGEEGHMAVNC-----------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
G Q CY CG GH+A NC R++ C+ CG H R C++ Q C+
Sbjct: 80 GGQECYKCGRVGHIARNCSQGGSYGGGFGGGYGGRQQTCYSCGGFGHMARDCTQGQKCYN 139
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
C + GH ++DCP + K +VC +C GH +C N+
Sbjct: 140 CGETGHVSRDCPTEAKG----ERVCYQCKQPGHIQSACPNN 176
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 22/108 (20%)
Query: 174 DPPDRGWQTCYNCG-----EEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA------ 222
D P +G TCYNCG +GH++ C A K K C+ CG++ H R+C +A
Sbjct: 20 DCPKKGTPTCYNCGVLDRLGQGHVSRECTVAPKEKS-CYRCGAVGHISRECPQAGENERP 78
Query: 223 ---QDCFICKKGGHRAKDCPDKHKSGFQNA-------QVCLKCGDSGH 260
Q+C+ C + GH A++C G Q C CG GH
Sbjct: 79 AGGQECYKCGRVGHIARNCSQGGSYGGGFGGGYGGRQQTCYSCGGFGH 126
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLE-----HGVRQCS---KAQDCFICK 229
G + C+NCGE H A +C K+ P C+ CG L+ H R+C+ K + C+ C
Sbjct: 4 GGRVCFNCGEATHQARDC---PKKGTPTCYNCGVLDRLGQGHVSRECTVAPKEKSCYRCG 60
Query: 230 KGGHRAKDCPDKHKS-GFQNAQVCLKCGDSGHDMFSC 265
GH +++CP ++ Q C KCG GH +C
Sbjct: 61 AVGHISRECPQAGENERPAGGQECYKCGRVGHIARNC 97
>gi|154345720|ref|XP_001568797.1| universal minicircle sequence binding protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134066139|emb|CAM43929.1| universal minicircle sequence binding protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|449310608|gb|AGE92531.1| universal minicircle sequence binding protein [Leishmania
braziliensis]
Length = 115
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGH 233
++CYNCGE GHM+ +C S ++ K CF CGS EH R+C+ + C+ C GH
Sbjct: 26 RSCYNCGETGHMSRDCPSE-RKPKSCFNCGSTEHLSRECTNEAKAGADTRSCYNCGGTGH 84
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
++DCP++ K + C CG + H
Sbjct: 85 MSRDCPNERK-----PKSCYNCGSTEH 106
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKD 237
TCY CGE GHM+ +C R A R C+ CG H R C K + CF C H +++
Sbjct: 5 TCYKCGEAGHMSRSCPRVAATRS--CYNCGETGHMSRDCPSERKPKSCFNCGSTEHLSRE 62
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C ++ K+G + + C CG +GH C N
Sbjct: 63 CTNEAKAG-ADTRSCYNCGGTGHMSRDCPN 91
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R ++C+NCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 42 PSERKPKSCFNCGSTEHLSRECTNEAKAGADTRSCYNCGGTGHMSRDCPNERKPKSCYNC 101
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 102 GSTEHLSRECPDRH 115
>gi|353236645|emb|CCA68635.1| hypothetical protein PIIN_02500 [Piriformospora indica DSM 11827]
Length = 257
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 181 QTCYNCGEEGHMAVNC--RSAVKRKKP----CFVCGSLEHGVRQCSKAQD---------C 225
+TC+ C ++GH A +C S + K+P C+ CG+ +H + +C K D C
Sbjct: 93 KTCFACRQKGHAAKDCPSNSELGEKRPVTGICYRCGATKHTLAKCRKPIDEANPLPFASC 152
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
FICK GH A CP K + N C CG + H +C
Sbjct: 153 FICKGKGHLASSCPQNEKGIYPNGGSCKLCGQTDHLARAC 192
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCR 266
+ CF C++ GH AKDCP + G + +C +CG + H + CR
Sbjct: 93 KTCFACRQKGHAAKDCPSNSELGEKRPVTGICYRCGATKHTLAKCR 138
>gi|154345718|ref|XP_001568796.1| putative universal minicircle sequence binding protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134066138|emb|CAM43928.1| putative universal minicircle sequence binding protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|449310630|gb|AGE92542.1| universal minicircle sequence binding protein [Leishmania
braziliensis]
Length = 115
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGH 233
++CYNCGE GHM+ +C S ++ K CF CGS EH R+C+ + C+ C GH
Sbjct: 26 RSCYNCGETGHMSRDCPSE-RKPKSCFNCGSTEHLSRECTNEAKAGADTRSCYNCGGTGH 84
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
++DCP++ K + C CG + H
Sbjct: 85 LSRDCPNERK-----PKSCYNCGSTEH 106
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKD 237
TCY CGE GHM+ +C R A R C+ CG H R C K + CF C H +++
Sbjct: 5 TCYKCGEAGHMSRSCPRVAATRS--CYNCGETGHMSRDCPSERKPKSCFNCGSTEHLSRE 62
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C ++ K+G + + C CG +GH C N
Sbjct: 63 CTNEAKAG-ADTRSCYNCGGTGHLSRDCPN 91
>gi|259484556|tpe|CBF80881.1| TPA: zinc knuckle domain protein (Byr3), putative (AFU_orthologue;
AFUA_1G07630) [Aspergillus nidulans FGSC A4]
Length = 171
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 15/101 (14%)
Query: 179 GWQTCYNCGEEGHMAVNC-----------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
G Q CY CG GH+A NC R++ C+ CG H R C++ Q C+
Sbjct: 75 GGQECYKCGRVGHIARNCSQGGSYGGGFGGGYGGRQQTCYSCGGFGHMARDCTQGQKCYN 134
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
C + GH ++DCP + K +VC +C GH +C N+
Sbjct: 135 CGETGHVSRDCPTEAK----GERVCYQCKQPGHIQSACPNN 171
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 17/103 (16%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA---------QD 224
D P +G TCYNCG +GH++ C A K K C+ CG++ H R+C +A Q+
Sbjct: 20 DCPKKGTPTCYNCGGQGHVSRECTVAPKEKS-CYRCGAVGHISRECPQAGENERPAGGQE 78
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNA-------QVCLKCGDSGH 260
C+ C + GH A++C G Q C CG GH
Sbjct: 79 CYKCGRVGHIARNCSQGGSYGGGFGGGYGGRQQTCYSCGGFGH 121
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 14/95 (14%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCS---KAQDCFICKKGGHR 234
G + C+NCGE H A +C K+ P C+ CG H R+C+ K + C+ C GH
Sbjct: 4 GGRVCFNCGEATHQARDC---PKKGTPTCYNCGGQGHVSRECTVAPKEKSCYRCGAVGHI 60
Query: 235 AKDCP----DKHKSGFQNAQVCLKCGDSGHDMFSC 265
+++CP ++ +G Q C KCG GH +C
Sbjct: 61 SRECPQAGENERPAG---GQECYKCGRVGHIARNC 92
>gi|406863952|gb|EKD16998.1| zinc knuckle protein [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 545
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-------DCFICKKGGHRA 235
C+NCG+EGHM +C K + CF CG H C C +C++ GHRA
Sbjct: 136 CFNCGQEGHMKSDCPQPPKSRG-CFNCGEEGHSKADCPNPAVAREFTGTCRVCEQQGHRA 194
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKV 276
DCP K + VC C + GH++ C +D V
Sbjct: 195 ADCPSKPPT------VCKNCQEEGHEVVVCDKPRKIDRSHV 229
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
CYNC E GH +C + K C C H ++CS+ + +C C + GH +++
Sbjct: 380 CYNCEETGHRIRDCPNPRPDKFACRNCKQSGHSSKECSEPRSAEGVECKKCNEVGHFSRE 439
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSL 271
CP + G ++ C CG GH C N L
Sbjct: 440 CP---QGGGGGSRACHNCGQEGHSKNDCTNERVL 470
>gi|242018245|ref|XP_002429589.1| zinc finger protein cchc domain containing protein, putative
[Pediculus humanus corporis]
gi|212514556|gb|EEB16851.1| zinc finger protein cchc domain containing protein, putative
[Pediculus humanus corporis]
Length = 380
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCS-------KAQDCFICKKG 231
C++C GH+ C S + + C+ CGS EH +C + +CFICK+
Sbjct: 228 CFHCRGSGHVLSQCPSLTETENTGTGICYKCGSTEHSAIECKVVKGSSFQFAECFICKEQ 287
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH A+ CPD + + + C +CGD H
Sbjct: 288 GHIARQCPDNPRGLYPHGGACRECGDVTH 316
>gi|156065797|ref|XP_001598820.1| hypothetical protein SS1G_00909 [Sclerotinia sclerotiorum 1980]
gi|154691768|gb|EDN91506.1| hypothetical protein SS1G_00909 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 502
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGHR 234
C+NCG+EGH C K +PCF C H +C+ + C IC++ GHR
Sbjct: 72 ACFNCGQEGHSKAECPEPPK-ARPCFNCSEEGHTKAECTNPAVPREFSGTCRICEQQGHR 130
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
A DCP ++C C + GH + C+N ++
Sbjct: 131 ASDCPSA------PPKLCNNCKEEGHSILECKNPRKIE 162
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 15/97 (15%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKK----PCFVCGSLEHGVRQCSKAQD----C 225
+P DRG C C E GH++ +C V + CF C + H VR C ++ C
Sbjct: 281 EPVDRGVPLCSRCSELGHISKHCTQEVGESERVQVQCFNCSEIGHRVRDCPIPREDKFAC 340
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQV--CLKCGDSGH 260
CKK GH +KDC +G ++A+ C KC + GH
Sbjct: 341 RNCKKSGHSSKDC-----TGPRSAEGVECKKCNEIGH 372
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
C+NC E GH +C + K C C H + C+ + +C C + GH ++D
Sbjct: 317 CFNCSEIGHRVRDCPIPREDKFACRNCKKSGHSSKDCTGPRSAEGVECKKCNEIGHFSRD 376
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
CP + VC C GH C N
Sbjct: 377 CPTGGGG---DGGVCRNCNQPGHHSKECTN 403
>gi|341876702|gb|EGT32637.1| hypothetical protein CAEBREN_32053 [Caenorhabditis brenneri]
Length = 1129
Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C NCGEEGH A +C K ++PC C + H R C + + C C + GH +K+C
Sbjct: 665 CRNCGEEGHFARDCPQP-KVERPCRNCNEVGHFSRDCPQPKVPFGPCRNCGEEGHFSKEC 723
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K + + + C +CG+ GH + C
Sbjct: 724 -TKERVRLEPTEPCRRCGEEGHWGYEC 749
Score = 41.6 bits (96), Expect = 0.48, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFI 227
P + + C NC E GH + +C PC CG H ++C+K + C
Sbjct: 679 PQPKVERPCRNCNEVGHFSRDCPQPKVPFGPCRNCGEEGHFSKECTKERVRLEPTEPCRR 738
Query: 228 CKKGGHRAKDCPDK 241
C + GH +CP +
Sbjct: 739 CGEEGHWGYECPSR 752
>gi|391333168|ref|XP_003740993.1| PREDICTED: uncharacterized protein LOC100904700 [Metaseiulus
occidentalis]
Length = 1180
Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRA--KDC 238
Q C+NC + GH+A C+ + C+ CG +H + C + C++C K GHRA + C
Sbjct: 210 QCCFNCQKFGHLAHECKEGKAEGRRCYRCGKEDHIAKDCEASPSCYVCGKNGHRADSRSC 269
Query: 239 PDKHKSG 245
P + +
Sbjct: 270 PAQREQA 276
>gi|255947154|ref|XP_002564344.1| Pc22g03000 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591361|emb|CAP97588.1| Pc22g03000 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 487
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAK 236
+ CYNCG+EGH C ++ CF CG H +C+K + C IC+K GH A
Sbjct: 65 RACYNCGQEGHSKAEC-PEPRKTGSCFNCGQEGHSKSECTKPRVFKGTCRICEKEGHPAV 123
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
DCP++ VC C GH C+ + D
Sbjct: 124 DCPER------PPDVCKNCQTEGHKTMECKENRKFD 153
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKG 231
DR C NC GH +CR + K C CGS+EH +C++ + +C C +
Sbjct: 303 DRTEIKCSNCDGVGHRVRDCRQQRRNKHGCRNCGSVEHIASECTEPRSAADVECRKCNET 362
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
GH AKDCP+ G + C CG H C
Sbjct: 363 GHFAKDCPNVADRG---PRTCRNCGSEDHIARDC 393
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 9/96 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKR-KKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAK 236
C C E GH A +C + R + C CGS +H R C + +D C C+K GH ++
Sbjct: 356 CRKCNETGHFAKDCPNVADRGPRTCRNCGSEDHIARDCDQPRDVSTVTCRNCEKTGHYSR 415
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
DC D+ K + Q C CG+ GH + CR D
Sbjct: 416 DC-DQPKD-WSKVQ-CKNCGEMGHTVVRCRQPKDKD 448
>gi|308472350|ref|XP_003098403.1| hypothetical protein CRE_06839 [Caenorhabditis remanei]
gi|308269067|gb|EFP13020.1| hypothetical protein CRE_06839 [Caenorhabditis remanei]
Length = 386
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 182 TCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKA-------QDCFICKKGG 232
C++C E GH +C R++ + CF CGS+EH + +C K CF+CK+ G
Sbjct: 228 ACFHCREPGHRLADCPKRNSSQSDGVCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVG 287
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
H ++DC + + C CG GH C
Sbjct: 288 HISRDCHQNANGVYPDGGACNVCGAVGHLKRDC 320
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
CF C++ GHR DCP ++ S Q+ VC KCG H + C+
Sbjct: 229 CFHCREPGHRLADCPKRNSS--QSDGVCFKCGSMEHSIHECK 268
>gi|123325507|gb|ABM74410.1| vasa protein [Botrylloides violaceus]
Length = 630
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSKAQD-------CFICKKGG 232
C+ CGEEGHM+ +C R K CF CG H R C CF C + G
Sbjct: 43 CFKCGEEGHMSRDCPSGGGGGSRSKGCFKCGEEGHMSRDCPSGGGGGSRSKGCFKCGEEG 102
Query: 233 HRAKDCPDKHKSGFQ--------NAQVCLKCGDSGH 260
H ++DCP+ KS F + C KCG+ GH
Sbjct: 103 HISRDCPNGQKSDFSRNGAGDCARSTACYKCGEEGH 138
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 19/82 (23%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEH----------------GVRQCSKAQ 223
C+ CGEEGHM+ +C R K CF CG H G C+++
Sbjct: 69 CFKCGEEGHMSRDCPSGGGGGSRSKGCFKCGEEGHISRDCPNGQKSDFSRNGAGDCARST 128
Query: 224 DCFICKKGGHRAKDCPDKHKSG 245
C+ C + GH +++CP ++G
Sbjct: 129 ACYKCGEEGHFSRECPKAGENG 150
>gi|156544377|ref|XP_001607405.1| PREDICTED: hypothetical protein LOC100123711 [Nasonia vitripennis]
Length = 531
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP---CFVCGSLEHGVRQC--SKAQD-----CFICKK 230
Q C++C + GH +C K + CF CGS EH +C +K+ D CFIC++
Sbjct: 392 QVCFHCRKAGHNLSDCPELGKEEAGTGICFKCGSTEHTHFECKVNKSDDYRYAKCFICRE 451
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH AK CPD K + + C CGD H
Sbjct: 452 QGHIAKQCPDNPKGLYPDGGSCKICGDVTH 481
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 217 RQCSKA------QDCFICKKGGHRAKDCPD--KHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
R+C KA Q CF C+K GH DCP+ K ++G +C KCG + H F C+ +
Sbjct: 380 RKCEKALARVRRQVCFHCRKAGHNLSDCPELGKEEAG---TGICFKCGSTEHTHFECKVN 436
Query: 269 YSLDDLKVCLYFL 281
S DD + F+
Sbjct: 437 KS-DDYRYAKCFI 448
>gi|291225537|ref|XP_002732758.1| PREDICTED: zinc finger, CCHC domain containing 9-like [Saccoglossus
kowalevskii]
Length = 245
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD--------- 224
R + C++C + GH +C +K CF CGS EH QC+ D
Sbjct: 90 RNKKVCFHCRQPGHGVADCPVILKANDQGMGICFKCGSTEHTSHQCTARVDKKRGEYPFA 149
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSL 271
CF+C K GH ++ CPD K + C CG H + C ++ SL
Sbjct: 150 RCFVCHKIGHLSRQCPDNPKGLYPYGGGCTICGSVKHFVKDCPDNISL 197
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC-------RNSYSLDDLKVC 277
CF C++ GH DCP K+ Q +C KCG + H C R Y VC
Sbjct: 95 CFHCRQPGHGVADCPVILKANDQGMGICFKCGSTEHTSHQCTARVDKKRGEYPFARCFVC 154
>gi|258676573|gb|ACV87294.1| VASA DEAD-box protein [Phallusia mammillata]
Length = 851
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 25/105 (23%)
Query: 181 QTCYNCGEEGHMAVNCRSA-----------VKRKKPCFVCGSLEHGVRQCS--------- 220
+TC+ CGEEGHM+ C SA R K CF CG H R+C
Sbjct: 162 KTCFKCGEEGHMSRECPSADSSSGGFGGSGGGRPKTCFKCGEEGHMSRECPSADSSSGGF 221
Query: 221 ---KAQDCFICKKGGHRAKDCP--DKHKSGFQNAQVCLKCGDSGH 260
K++ CF C + GH ++DCP G ++ C KCG+ GH
Sbjct: 222 GGGKSRGCFKCGEEGHMSRDCPSGGSTGFGGGKSKSCFKCGEEGH 266
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 18/95 (18%)
Query: 183 CYNCGEEGHMAVNC------RSAVKRKKPCFVCGSLEHGVRQCS-----------KAQDC 225
C+ CGEEGHM+ +C + K CF CG H R C + + C
Sbjct: 229 CFKCGEEGHMSRDCPSGGSTGFGGGKSKSCFKCGEEGHMSRDCPSGGSQGGFGGGRPKGC 288
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
F C + GH +++CP S + C KCG+ GH
Sbjct: 289 FKCGEEGHMSRECPSGGDSS-NRGKGCFKCGEEGH 322
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 14/73 (19%)
Query: 181 QTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKAQD-------CF 226
++C+ CGEEGHM+ +C R K CF CG H R+C D CF
Sbjct: 256 KSCFKCGEEGHMSRDCPSGGSQGGFGGGRPKGCFKCGEEGHMSRECPSGGDSSNRGKGCF 315
Query: 227 ICKKGGHRAKDCP 239
C + GH A+DCP
Sbjct: 316 KCGEEGHMARDCP 328
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 44/101 (43%), Gaps = 21/101 (20%)
Query: 181 QTCYNCGEEGHMAVNC--------RSAVKRKKPCFVCGSLEHGVRQCSKA---------- 222
+TC+ CGEEGHM+ C + + CF CG H R C
Sbjct: 196 KTCFKCGEEGHMSRECPSADSSSGGFGGGKSRGCFKCGEEGHMSRDCPSGGSTGFGGGKS 255
Query: 223 QDCFICKKGGHRAKDCP---DKHKSGFQNAQVCLKCGDSGH 260
+ CF C + GH ++DCP + G + C KCG+ GH
Sbjct: 256 KSCFKCGEEGHMSRDCPSGGSQGGFGGGRPKGCFKCGEEGH 296
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 183 CYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSKAQD 224
C+ CGEEGHM+ C S + R K CF CG H R C A D
Sbjct: 288 CFKCGEEGHMSRECPSGGDSSNRGKGCFKCGEEGHMARDCPSAGD 332
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 25/108 (23%)
Query: 178 RGWQTCYNCGEEG-----HMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA---------- 222
+G+ + +N G G A S+ + K CF CG H R+C K
Sbjct: 99 KGFGSGFNSGSFGDKPDRSFASGESSSNNKGKGCFKCGEEGHKSRECPKGGQQGFGASGG 158
Query: 223 ---QDCFICKKGGHRAKDCPDK-------HKSGFQNAQVCLKCGDSGH 260
+ CF C + GH +++CP SG + C KCG+ GH
Sbjct: 159 GRPKTCFKCGEEGHMSRECPSADSSSGGFGGSGGGRPKTCFKCGEEGH 206
>gi|240849635|ref|NP_001155824.1| Zinc finger, CCHC domain containing 9-like [Acyrthosiphon pisum]
gi|239787929|dbj|BAH70666.1| ACYPI009958 [Acyrthosiphon pisum]
Length = 263
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKK--PCFVCGSLEHGVRQCSKAQD--------CFICKK 230
+ C++C + GHM C CF CGS EH + +C A + CFIC +
Sbjct: 115 KACFHCRQPGHMLNQCPELGTNTALGVCFKCGSTEHKLHECRNAGNNDQLDFAKCFICNE 174
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH ++ CPD + N C CGD H
Sbjct: 175 EGHLSRQCPDNPMGLYPNGGACRSCGDVTH 204
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNA-QVCLKCGDSGHDMFSCRNSYSLDDLKVCLYFL 281
CF C++ GH CP+ G A VC KCG + H + CRN+ + D L F+
Sbjct: 117 CFHCRQPGHMLNQCPE---LGTNTALGVCFKCGSTEHKLHECRNAGNNDQLDFAKCFI 171
>gi|110815940|sp|Q77373.3|POL_HV1AN RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1435
Score = 58.5 bits (140), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF--ICKKG 231
+P +G C+NCG+EGH+A NCR+ RKK C+ CG H ++ C + F I G
Sbjct: 387 NPIRKGTIKCFNCGKEGHIARNCRAP--RKKGCWKCGQEGHQMKDCRNGKQFFRQILASG 444
Query: 232 GHRAK 236
GH A+
Sbjct: 445 GHEAR 449
Score = 44.3 bits (103), Expect = 0.075, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
CF C K GH A++C K G C KCG GH M CRN
Sbjct: 396 CFNCGKEGHIARNCRAPRKKG------CWKCGQEGHQMKDCRN 432
>gi|319921907|gb|ADV78572.1| universal minicircle sequence-binding protein 2 [Leishmania
donovani]
Length = 175
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGH 233
++CYNCGE GHM+ +C S ++ K C+ CGS +H R+C+ + C+ C GH
Sbjct: 86 RSCYNCGETGHMSRDCPSE-RKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGH 144
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
++DCP++ K + C CG + H
Sbjct: 145 LSRDCPNERK-----PKSCYNCGSTDH 166
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKD 237
TCY CGE GHM+ +C R+A R C+ CG H R C K + C+ C H +++
Sbjct: 65 TCYKCGEAGHMSRSCPRAAATRS--CYNCGETGHMSRDCPSERKPKSCYNCGSTDHLSRE 122
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C ++ K+G + + C CG +GH C N
Sbjct: 123 CTNEAKAG-ADTRSCYNCGGTGHLSRDCPN 151
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R ++CYNCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 102 PSERKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGHLSRDCPNERKPKSCYNC 161
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 162 GSTDHLSRECPDRH 175
>gi|156720287|dbj|BAF76796.1| Vasa-related protein [Enchytraeus japonensis]
Length = 990
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 22/120 (18%)
Query: 178 RGWQTCYNCGEEGHMAVNC------RSAVKRKKP--CFVCGSLEHGVRQCSKAQD----- 224
R + CYNCG EGHM +C RS + P CF CGS H R C + +
Sbjct: 349 RPLRACYNCGNEGHMTRDCTEPRKERSNENSRPPRACFNCGSEAHMSRDCPEPKKERPND 408
Query: 225 -------CFICKKGGHRAKDCPD--KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
CF C H +++CP+ K + G + + VC +C GH C +D K
Sbjct: 409 NSRPPRACFNCGSEAHMSRECPEPKKEREGGKPSGVCFRCDLEGHMAKDCSKPALTEDGK 468
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 23/111 (20%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRK-------KPCFVCGSLEHGVRQCSKAQD------ 224
RG + CYNCG + HM+ +C K + + C+ CG+ H R C++ +
Sbjct: 319 RGPRACYNCGSDAHMSRDCPEPRKERSNDSRPLRACYNCGNEGHMTRDCTEPRKERSNEN 378
Query: 225 ------CFICKKGGHRAKDCPDKHKS----GFQNAQVCLKCGDSGHDMFSC 265
CF C H ++DCP+ K + + C CG H C
Sbjct: 379 SRPPRACFNCGSEAHMSRDCPEPKKERPNDNSRPPRACFNCGSEAHMSREC 429
>gi|91179150|gb|ABE27759.1| vasa [Azumapecten farreri]
Length = 801
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 12/98 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRK---KPCFVCGSLEHGVRQCSKA--------QDCFICKKG 231
C+ CGEEGH A C + + CF CG H R+C K + CF C +
Sbjct: 198 CHKCGEEGHFARECPTGGGGGGGDRSCFKCGEQGHMSRECPKGGGGGGGGDRSCFKCGEQ 257
Query: 232 GHRAKDCPDKHKSGFQNA-QVCLKCGDSGHDMFSCRNS 268
GH +++CP G + C KCG+ GH C N+
Sbjct: 258 GHMSRECPSSGGGGGGGGDRGCFKCGEQGHFSRECPNA 295
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 13/80 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRK----KPCFVCGSLEHGVRQCSKA---------QDCFI 227
++C+ CGE+GHM+ C + CF CG H R+C + + CF
Sbjct: 222 RSCFKCGEQGHMSRECPKGGGGGGGGDRSCFKCGEQGHMSRECPSSGGGGGGGGDRGCFK 281
Query: 228 CKKGGHRAKDCPDKHKSGFQ 247
C + GH +++CP+ KSG Q
Sbjct: 282 CGEQGHFSRECPNAEKSGIQ 301
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 12/98 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP-----CFVCGSLEHGVRQCSKA-------QDCFICKK 230
C+ CGE+GH A C + + C CG H R+C + CF C +
Sbjct: 170 CHKCGEDGHFARECPTGGGGRGGGGGGKCHKCGEEGHFARECPTGGGGGGGDRSCFKCGE 229
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
GH +++CP G + C KCG+ GH C +S
Sbjct: 230 QGHMSRECPKGGGGGGGGDRSCFKCGEQGHMSRECPSS 267
>gi|221114884|ref|XP_002154581.1| PREDICTED: DNA-binding protein HEXBP-like isoform 1 [Hydra
magnipapillata]
gi|449665534|ref|XP_004206169.1| PREDICTED: DNA-binding protein HEXBP-like isoform 2 [Hydra
magnipapillata]
Length = 209
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 181 QTCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKAQD-CFICKKGGHRAKD 237
+TCY+CG GH++ +C R K K+ C+ CG H R C ++ C+ C K GH KD
Sbjct: 61 RTCYSCGRSGHISRDCTQRGGRKGKQRCYRCGKDGHFARDCEGEEEMCYTCGKAGHIKKD 120
Query: 238 CPDKHK-SGFQNAQVCLKCGDSGH 260
CP+ + N QVC C GH
Sbjct: 121 CPESESFTSSTNEQVCYHCNKPGH 144
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 19/96 (19%)
Query: 182 TCYNCGEEGHMAVNC------RSAVKRKKPCFVCGSLEHGVRQCSK-----------AQD 224
TCY CG EGH A NC ++ K K C+ CG + H R CSK ++
Sbjct: 3 TCYKCGNEGHYARNCTEPSSTETSQKSDKECYRCGEVGHLSRDCSKSSSGGGSGNFDSRT 62
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C+ C + GH ++DC + G + Q C +CG GH
Sbjct: 63 CYSCGRSGHISRDCTQ--RGGRKGKQRCYRCGKDGH 96
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA---------QDCFIC 228
+G Q CY CG++GH A +C ++ C+ CG H + C ++ Q C+ C
Sbjct: 83 KGKQRCYRCGKDGHFARDCEG---EEEMCYTCGKAGHIKKDCPESESFTSSTNEQVCYHC 139
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
K GH A++C +K S + C KC + GH C N
Sbjct: 140 NKPGHFARECAEKDDSSRERDVTCYKCNEKGHFARDCHN 178
>gi|317137775|ref|XP_001727944.2| cellular nucleic acid-binding protein [Aspergillus oryzae RIB40]
Length = 171
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 179 GWQTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKG 231
G Q CY CG GH+A NC R+ C+ CG H R C+ Q C+ C +
Sbjct: 80 GGQECYKCGHVGHIARNCSQGGYSGDGYGGRQHTCYSCGGHGHMARDCTHGQKCYNCGEV 139
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH ++DCP + + +VC KC GH +C N
Sbjct: 140 GHVSRDCPSE----ARGERVCYKCKQPGHVQAACPN 171
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 48/102 (47%), Gaps = 16/102 (15%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C A K +KPC+ C + H R C +A
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSRECTVAPK-EKPCYRCSGVGHISRDCPQAPSGDGYSGATG 80
Query: 223 -QDCFICKKGGHRAKDCPDKHKSGFQNA---QVCLKCGDSGH 260
Q+C+ C GH A++C SG C CG GH
Sbjct: 81 GQECYKCGHVGHIARNCSQGGYSGDGYGGRQHTCYSCGGHGH 122
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 11/91 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKDC 238
C+NCG+ H A +C K+ P C+ CG H R+C+ K + C+ C GH ++DC
Sbjct: 10 CFNCGDASHQARDC---PKKGTPTCYNCGGQGHVSRECTVAPKEKPCYRCSGVGHISRDC 66
Query: 239 PDKHK----SGFQNAQVCLKCGDSGHDMFSC 265
P SG Q C KCG GH +C
Sbjct: 67 PQAPSGDGYSGATGGQECYKCGHVGHIARNC 97
>gi|57648427|gb|AAW55908.1| zinc finger protein 7 [Trypanosoma cruzi]
Length = 101
Score = 58.5 bits (140), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 16/100 (16%)
Query: 179 GWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSKAQD----------C 225
G + CYNCG GH++ C + + C+ CG + H R+C C
Sbjct: 2 GDRACYNCGRMGHLSRECPTRPPGAMGDRACYNCGRMGHLSRECPNRPAGGFRGVARGAC 61
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ C++ GH A+DCP+ G + C CG +GH +C
Sbjct: 62 YHCQQEGHLARDCPNAPPGG---ERACYNCGQTGHISRAC 98
>gi|2895760|gb|AAC32813.1| universal minicircle sequence binding protein [Crithidia
fasciculata]
gi|2895761|gb|AAC32814.1| universal minicircle sequence binding protein [Crithidia
fasciculata]
Length = 116
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-------SKAQDCFI 227
P +TCYNCG+ GH++ C S ++ K C+ CGS EH R+C + ++ C+
Sbjct: 21 PKAAASRTCYNCGQTGHLSRECPSE-RKPKACYNCGSTEHLSRECPNEAKTGADSRTCYN 79
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C + GH ++DCP + K + C CG + H
Sbjct: 80 CGQSGHLSRDCPSERK-----PKACYNCGSTEH 107
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKDC 238
TCY CGE GHM+ C A + C+ CG H R+C K + C+ C H +++C
Sbjct: 6 TCYKCGEAGHMSRECPKAAASRT-CYNCGQTGHLSRECPSERKPKACYNCGSTEHLSREC 64
Query: 239 PDKHKSGFQNAQVCLKCGDSGH 260
P++ K+G +++ C CG SGH
Sbjct: 65 PNEAKTG-ADSRTCYNCGQSGH 85
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R + CYNCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 43 PSERKPKACYNCGSTEHLSRECPNEAKTGADSRTCYNCGQSGHLSRDCPSERKPKACYNC 102
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 103 GSTEHLSRECPDRH 116
>gi|213137655|gb|ACJ44508.1| gag protein [Human immunodeficiency virus 1]
Length = 261
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 13/120 (10%)
Query: 114 RVRKKKKKEA-DKIEIEDQSVIVRKEEQKV---ETADNGDEGVTTVEISDNIVLRKLLRG 169
R+ K KEA DKIE E + ++ K + + N DE ++ V ++ ++ R +G
Sbjct: 91 RIDVKDTKEALDKIEEEQNKCQQKTQQAKAADGKVSQNYDEAMSQVNNANIMMQRSNFKG 150
Query: 170 PRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
P+ C+NCG+EGH+A NCR+ RKK C+ CG H ++ C + Q F+ K
Sbjct: 151 PKRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCDERQANFLGK 201
Score = 37.4 bits (85), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 157 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 191
>gi|157876786|ref|XP_001686735.1| universal minicircle sequence binding protein [Leishmania major
strain Friedlin]
gi|68129810|emb|CAJ09116.1| universal minicircle sequence binding protein [Leishmania major
strain Friedlin]
Length = 175
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGH 233
++CYNCGE GHM+ +C S ++ K C+ CGS +H R+C+ + C+ C GH
Sbjct: 86 RSCYNCGETGHMSRDCPSE-RKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGH 144
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
++DCP++ K + C CG + H
Sbjct: 145 LSRDCPNERK-----PKSCYNCGSTDH 166
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKD 237
TCY CGE GHM+ +C R+A R C+ CG H R C K + C+ C H +++
Sbjct: 65 TCYKCGEAGHMSRSCPRAAATRS--CYNCGETGHMSRDCPSERKPKSCYNCGSTDHLSRE 122
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C ++ K+G + + C CG +GH C N
Sbjct: 123 CTNEAKAG-ADTRSCYNCGGTGHLSRDCPN 151
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R ++CYNCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 102 PSERKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGHLSRDCPNERKPKSCYNC 161
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 162 GSTDHLSRECPDRH 175
>gi|332079154|gb|AEE00157.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 448
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S NI++ R RGP+ + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMSQVTASANIMMQRGNFRGPKRIN-------KCFNCGKEGHLARNCRAP--RKKGCWK 415
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 416 CGKEGHQMKDCTERQANFLGK 436
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + R + CF C K GH A++C
Sbjct: 349 ACQGVGGPGHWARVLAEAMSQVTASANIMMQRGNFRGPKRINKCFNCGKEGHLARNCRAP 408
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 409 RKKG------CWKCGKEGHQMKDC 426
>gi|146104178|ref|XP_001469751.1| universal minicircle sequence binding protein [Leishmania infantum
JPCM5]
gi|134074121|emb|CAM72863.1| universal minicircle sequence binding protein [Leishmania infantum
JPCM5]
Length = 115
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGH 233
++CYNCGE GHM+ +C S ++ K C+ CGS +H R+C+ + C+ C GH
Sbjct: 26 RSCYNCGETGHMSRDCPSE-RKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGH 84
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
++DCP++ K + C CG + H
Sbjct: 85 MSRDCPNERK-----PKSCYNCGSTDH 106
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKD 237
TCY CGE GHM+ +C R+AV R C+ CG H R C K + C+ C H +++
Sbjct: 5 TCYKCGEAGHMSRSCPRAAVTRS--CYNCGETGHMSRDCPSERKPKSCYNCGSTDHLSRE 62
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C ++ K+G + + C CG +GH C N
Sbjct: 63 CTNEAKAG-ADTRSCYNCGGTGHMSRDCPN 91
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R ++CYNCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 42 PSERKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGHMSRDCPNERKPKSCYNC 101
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 102 GSTDHLSRECPDRH 115
>gi|299929701|gb|ADJ58058.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++TV+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSTVQHANVMMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|397570339|gb|EJK47249.1| hypothetical protein THAOC_34043 [Thalassiosira oceanica]
Length = 628
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C NCGE GHMA +C + KPC +C L H + C CF C GH +++C
Sbjct: 419 CNNCGEVGHMAKDC-PKDGQLKPCGLCAGLGHEMWACPMKSICFNCGVPGHVSREC--NQ 475
Query: 243 KSGFQNAQVCLKCGDSGHDMFSCR 266
+ G ++C C S H F CR
Sbjct: 476 RRGVPERKICTICFRSDHHRFQCR 499
>gi|358389553|gb|EHK27145.1| hypothetical protein TRIVIDRAFT_188061 [Trichoderma virens Gv29-8]
Length = 458
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAK 236
+CYNCG EGH +C K C CG H ++C + +C C K GH AK
Sbjct: 288 SCYNCGAEGHRVRDCPEPRVDKFACKNCGKSGHNAKECEEPPNMDNVECRKCNKTGHFAK 347
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
DCPD ++ C CG GH C ++D++
Sbjct: 348 DCPDG------GSRACRNCGQEGHISKECDQPKNMDNV 379
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 29/105 (27%)
Query: 177 DRGWQTCYNCGEEGHMAVNCR------SAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKK 230
DRG CYNCGE GH C S+ K K C+ CG+
Sbjct: 254 DRGVPKCYNCGELGHTTKGCSQEKTEPSSEKPKISCYNCGAE------------------ 295
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
GHR +DCP+ F C CG SGH+ C ++D+++
Sbjct: 296 -GHRVRDCPEPRVDKF----ACKNCGKSGHNAKECEEPPNMDNVE 335
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 206 CFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMF 263
CF CG H +C KA Q C CKK GH KDCP+ +C CG GH
Sbjct: 69 CFGCGEEGHRRAECPKAGEQTCHYCKKEGHMRKDCPEAP------PMLCSNCGQEGHFRN 122
Query: 264 SCRNSYSLD 272
SC N+ ++
Sbjct: 123 SCENARKIN 131
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 159 DNIVLRKLLRGPRYF-DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKK-PCFVCGSLEHGV 216
DN+ RK + + D PD G + C NCG+EGH++ C C C H
Sbjct: 332 DNVECRKCNKTGHFAKDCPDGGSRACRNCGQEGHISKECDQPKNMDNVTCRNCEETGHFS 391
Query: 217 RQCSKAQD-----CFICKKGGHRAKDC--PDKHKSGFQN 248
++C K +D C C++ GH C P K ++N
Sbjct: 392 KECPKPRDWSKVQCSNCEQFGHTKVRCKMPPKESDAYEN 430
>gi|164656387|ref|XP_001729321.1| hypothetical protein MGL_3356 [Malassezia globosa CBS 7966]
gi|159103212|gb|EDP42107.1| hypothetical protein MGL_3356 [Malassezia globosa CBS 7966]
Length = 171
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 10/94 (10%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ--------DCFI 227
P G TCYNCG++GH++V+C + K CF C H R+C A+ +C+
Sbjct: 21 PSAGNPTCYNCGQQGHVSVDCTNQPVPKT-CFRCNEAGHVSRECPHAEARGDAAAGECYR 79
Query: 228 CKKGGHRAKDCPDKHKSGF-QNAQVCLKCGDSGH 260
C + GH A+ CP SG +N + C CG GH
Sbjct: 80 CGETGHIARMCPVSGGSGAPRNPRACYNCGGVGH 113
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 180 WQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK---AQDCFICKKGGHRAK 236
++CYNCG GH C SA C+ CG H C+ + CF C + GH ++
Sbjct: 4 MRSCYNCGRPGHTIAACPSAGNPT--CYNCGQQGHVSVDCTNQPVPKTCFRCNEAGHVSR 61
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGH 260
+CP G A C +CG++GH
Sbjct: 62 ECPHAEARGDAAAGECYRCGETGH 85
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 19/96 (19%)
Query: 183 CYNCGEEGHMAVNC-----RSAVKRKKPCFVCGSLEHGVRQCSKAQD--------CFICK 229
CY CGE GH+A C A + + C+ CG + H R CS A C+ C
Sbjct: 77 CYRCGETGHIARMCPVSGGSGAPRNPRACYNCGGVGHLSRDCSSAPGAAATASMKCYNCG 136
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
GH +++CP + + C CG S H C
Sbjct: 137 NMGHLSRECPRPSQ------RSCYTCGSSDHLAAQC 166
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSA----VKRKKPCFVCGSLEHGVRQCSKA--QDCFICKK 230
R + CYNCG GH++ +C SA C+ CG++ H R+C + + C+ C
Sbjct: 99 PRNPRACYNCGGVGHLSRDCSSAPGAAATASMKCYNCGNMGHLSRECPRPSQRSCYTCGS 158
Query: 231 GGHRAKDCP 239
H A CP
Sbjct: 159 SDHLAAQCP 167
>gi|407917903|gb|EKG11203.1| Zinc finger CCHC-type protein [Macrophomina phaseolina MS6]
Length = 176
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 172 YFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ---DCFIC 228
+ PP RG CYNCG+ H A +C K C+ CG H R C + Q C+ C
Sbjct: 3 FSAPPARG---CYNCGDTSHQARDC--PTKGNPTCYNCGEQGHLSRDCQQPQAEKPCYRC 57
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K GH +++CP+ G Q C KCG GH +C
Sbjct: 58 GKVGHLSRECPEGGAPGMGAGQECYKCGKVGHIARNC 94
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 19/102 (18%)
Query: 181 QTCYNCGEEGHMAVNCRSAV---------------KRKKPCFVCGSLEHGVRQCSKAQDC 225
Q CY CG+ GH+A NC S R + C+ CG H R C++ Q C
Sbjct: 79 QECYKCGKVGHIARNCNSYGGGFGGGYGGGSGFGGPRGQTCYSCGGYGHMSRDCTQGQKC 138
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ C + GH ++DCP + N +VC KC GH +C N
Sbjct: 139 YNCGEVGHLSRDCPSE----TSNERVCYKCKQPGHVQAACPN 176
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 20/106 (18%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK--------AQDC 225
D P +G TCYNCGE+GH++ +C+ + +KPC+ CG + H R+C + Q+C
Sbjct: 23 DCPTKGNPTCYNCGEQGHLSRDCQQP-QAEKPCYRCGKVGHLSRECPEGGAPGMGAGQEC 81
Query: 226 FICKKGGHRAKDC-----------PDKHKSGFQNAQVCLKCGDSGH 260
+ C K GH A++C G Q C CG GH
Sbjct: 82 YKCGKVGHIARNCNSYGGGFGGGYGGGSGFGGPRGQTCYSCGGYGH 127
>gi|444314443|ref|XP_004177879.1| hypothetical protein TBLA_0A05670 [Tetrapisispora blattae CBS 6284]
gi|387510918|emb|CCH58360.1| hypothetical protein TBLA_0A05670 [Tetrapisispora blattae CBS 6284]
Length = 173
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 49/99 (49%), Gaps = 19/99 (19%)
Query: 181 QTCYNCGEEGHMAVNCRS-----------------AVKRKKPCFVCGSLEHGVRQCSKAQ 223
Q CY+CGE GHM+ +C S A + C+ CG H R C +++
Sbjct: 66 QRCYSCGETGHMSRDCPSGNSNGRRGGRFHNNRGGAGGSRVSCYKCGGPNHMARDCLQSE 125
Query: 224 D-CFICKKGGHRAKDCPDKHKS-GFQNAQVCLKCGDSGH 260
C+ C K GH A+DCP S G N +VC CG+SGH
Sbjct: 126 SKCYSCGKFGHLARDCPASGMSGGASNDRVCYACGESGH 164
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 19/94 (20%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
CYNC + GH+ C R+A K C+ CG H VR AQ C+ C + GH ++DCP
Sbjct: 26 CYNCNQPGHLQSECTMERTA--EFKQCYACGETGH-VRSECTAQRCYSCGETGHMSRDCP 82
Query: 240 DKHKSG-----FQNAQ--------VCLKCGDSGH 260
+ +G F N + C KCG H
Sbjct: 83 SGNSNGRRGGRFHNNRGGAGGSRVSCYKCGGPNH 116
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 19/88 (21%)
Query: 168 RGPRYFDPPDRGWQ-----TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC--- 219
RG R+ + +RG +CY CG HMA +C ++ + C+ CG H R C
Sbjct: 90 RGGRFHN--NRGGAGGSRVSCYKCGGPNHMARDC---LQSESKCYSCGKFGHLARDCPAS 144
Query: 220 ------SKAQDCFICKKGGHRAKDCPDK 241
S + C+ C + GH ++DCP K
Sbjct: 145 GMSGGASNDRVCYACGESGHISRDCPSK 172
>gi|401420034|ref|XP_003874506.1| universal minicircle sequence binding protein,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322490742|emb|CBZ26006.1| universal minicircle sequence binding protein,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 115
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGH 233
++CYNCGE GH++ +C S ++ K C+ CGS EH R+C+ + C+ C GH
Sbjct: 26 RSCYNCGETGHLSRDCPSE-RKPKSCYNCGSTEHLSRECTNEAKAGADTRSCYNCGGTGH 84
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
++DCP++ K + C CG + H
Sbjct: 85 MSRDCPNERK-----PKSCYNCGSTEH 106
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKD 237
TCY CGE GHM+ +C R+A R C+ CG H R C K + C+ C H +++
Sbjct: 5 TCYKCGEAGHMSRSCPRAAATRS--CYNCGETGHLSRDCPSERKPKSCYNCGSTEHLSRE 62
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C ++ K+G + + C CG +GH C N
Sbjct: 63 CTNEAKAG-ADTRSCYNCGGTGHMSRDCPN 91
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R ++CYNCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 42 PSERKPKSCYNCGSTEHLSRECTNEAKAGADTRSCYNCGGTGHMSRDCPNERKPKSCYNC 101
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 102 GSTEHLSRECPDRH 115
>gi|401420042|ref|XP_003874510.1| putative universal minicircle sequence binding protein (UMSBP)
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322490746|emb|CBZ26010.1| putative universal minicircle sequence binding protein (UMSBP)
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 298
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 53/128 (41%), Gaps = 31/128 (24%)
Query: 182 TCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
TC+ CGEEGHM+ C RS CF CG H R C +K +C+ C
Sbjct: 44 TCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGEAGHMSRDCPNSAKQGAAKGFECYKCG 103
Query: 230 KGGHRAKDCPDKH----------------KSGFQNAQVCLKCGDSGHDMFSCRN---SYS 270
+ GH ++DCP + G+ + C KCGD+GH C N YS
Sbjct: 104 QEGHLSRDCPSSQGGSRGGYGQKRGRNGAQGGYGGDRACYKCGDAGHISRDCPNGQGGYS 163
Query: 271 LDDLKVCL 278
+ C
Sbjct: 164 GAGDRTCY 171
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 183 CYNCGEEGHMAVNCRSAV----KRKKPCFVCGSLEHGVRQC--------SKAQDCFICKK 230
C NCG+EGH A C A +R CF CG H R+C + A CF C +
Sbjct: 18 CRNCGKEGHYARECPEADSKGDERSSTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCGE 77
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH ++DCP+ K G C KCG GH
Sbjct: 78 AGHMSRDCPNSAKQGAAKGFECYKCGQEGH 107
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 31/119 (26%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD---------- 224
G TC+ CGE GHM+ +C ++ K+ C+ CG H R C +Q
Sbjct: 68 GAMTCFRCGEAGHMSRDCPNSAKQGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKR 127
Query: 225 --------------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRN 267
C+ C GH ++DCP+ + G+ A + C KCGD+GH C N
Sbjct: 128 GRNGAQGGYGGDRACYKCGDAGHISRDCPNG-QGGYSGAGDRTCYKCGDAGHISRDCPN 185
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 17/106 (16%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRK---KPCFVCGSLEHGVRQCSKA------------- 222
G + CY CGE GH++ C SA + C+ CG H R+C +A
Sbjct: 194 GDRKCYKCGESGHISRECPSAGSTGSGDRTCYKCGKPGHISRECPEAGGSYGGSRGGGSD 253
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
+ C+ C + GH +++CP +G + + C KCG++GH C +S
Sbjct: 254 RTCYKCGEAGHMSRECPSAGGTGSGD-RACYKCGEAGHISRDCPSS 298
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 32/109 (29%)
Query: 183 CYNCGEEGHMAVNC-------RSAVKRKK-------------PCFVCGSLEHGVRQCSKA 222
CY CG+EGH++ +C R +K+ C+ CG H R C
Sbjct: 99 CYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRNGAQGGYGGDRACYKCGDAGHISRDCPNG 158
Query: 223 QD---------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGH 260
Q C+ C GH ++DCP+ + G+ A + C KCG+SGH
Sbjct: 159 QGGYSGAGDRTCYKCGDAGHISRDCPNG-QGGYSGAGDRKCYKCGESGH 206
>gi|157876792|ref|XP_001686738.1| putative universal minicircle sequence binding protein [Leishmania
major strain Friedlin]
gi|68129813|emb|CAJ09119.1| putative universal minicircle sequence binding protein [Leishmania
major strain Friedlin]
Length = 271
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAV----KRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
+C NCG+EGH A C A +R CF CG H R+C + A CF C
Sbjct: 17 SCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCG 76
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+ GH ++DCP+ K G C KCG GH
Sbjct: 77 EAGHMSRDCPNSAKPGAAKGFECYKCGQEGH 107
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 31/119 (26%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD---------- 224
G TC+ CGE GHM+ +C ++ K C+ CG H R C +Q
Sbjct: 68 GAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKR 127
Query: 225 --------------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRN 267
C+ C GH ++DCP+ + G+ A + C KCGD+GH C N
Sbjct: 128 GRSGAQGGYSGDRTCYKCGDAGHISRDCPNG-QGGYSGAGDRTCYKCGDAGHISRDCPN 185
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 179 GWQTCYNCGEEGHMAVNCRS-----AVKRKKPCFVCGSLEHGVRQCSKAQD--------- 224
G +TCY CG+ GH++ +C + + + C+ CG H R C Q
Sbjct: 138 GDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRK 197
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C+ C + GH +++CP +G + + C KCG GH
Sbjct: 198 CYKCGESGHMSRECPSAGSTGSSD-RACYKCGKPGH 232
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 32/109 (29%)
Query: 183 CYNCGEEGHMAVNCRSAV---------KRKKP-----------CFVCGSLEHGVRQCSKA 222
CY CG+EGH++ +C S+ KR + C+ CG H R C
Sbjct: 99 CYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNG 158
Query: 223 QD---------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGH 260
Q C+ C GH ++DCP+ + G+ A + C KCG+SGH
Sbjct: 159 QGGYSGAGDRTCYKCGDAGHISRDCPNG-QGGYSGAGDRKCYKCGESGH 206
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 20/108 (18%)
Query: 179 GWQTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKA-------QD 224
G +TCY CG+ GH++ +C A RK C+ CG H R+C A +
Sbjct: 166 GDRTCYKCGDAGHISRDCPNGQGGYSGAGDRK--CYKCGESGHMSRECPSAGSTGSSDRA 223
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNA----QVCLKCGDSGHDMFSCRNS 268
C+ C K GH +++CP+ S + + C KCG++GH C +S
Sbjct: 224 CYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
>gi|417398164|gb|JAA46115.1| Putative e3 ubiquitin ligase [Desmodus rotundus]
Length = 271
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C +A++ + C+ CGS EH + +C D CF+C
Sbjct: 130 CFHCRKPGHGIADCPAALESQDMGTGICYRCGSTEHEITKCKANVDPALGEFPFAKCFVC 189
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
+ GH ++ CPD K + + C CG GH C S D +
Sbjct: 190 GEMGHLSRSCPDNPKGVYADGGCCRLCGSVGHFKKDCPQSQHSDQM 235
>gi|146104100|ref|XP_001469726.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398024576|ref|XP_003865449.1| hypothetical protein, conserved [Leishmania donovani]
gi|134074096|emb|CAM72838.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322503686|emb|CBZ38772.1| hypothetical protein, conserved [Leishmania donovani]
Length = 566
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
CY C + GHM C + C+ CG+ H + C CF C GHR+ +CP +
Sbjct: 128 CYQCHQLGHMMTTCP-----QTRCYNCGTFGHSSQICHSKPHCFHCSHSGHRSSECPMRS 182
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K +VC +C + GH+ +C
Sbjct: 183 K-----GRVCYQCNEPGHEAANC 200
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD-- 240
C++C GH + C K + C+ C H C + Q C +C + GH CP+
Sbjct: 165 CFHCSHSGHRSSECPMRSKGRV-CYQCNEPGHEAANCPQGQLCRMCHRPGHFVAHCPEVV 223
Query: 241 -------KHKSGFQNAQVCLKCGDSGHDMFSCRNSY 269
H +G + C CG + H+ C Y
Sbjct: 224 CNLCHVKGHTAGVCDNVHCDNCGRN-HETVHCHQPY 258
>gi|296178353|dbj|BAJ07808.1| putative vasa protein [Oxycomanthus japonicus]
Length = 851
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 10/110 (9%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKA------QDCFIC 228
G ++CY CGE+GH++ +C SA C CG H R+C + C C
Sbjct: 191 GGRSCYKCGEDGHISRDCPSAGGGGGGGGRGCHKCGEEGHFARECPSGGGGGGGRACHKC 250
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKVCL 278
+ GH A++CP G + C KCG+ GH C + + C
Sbjct: 251 GEEGHFARECPSGGGGGGGGGRACRKCGEEGHFARECPSGGGGGGGRGCF 300
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 47/114 (41%), Gaps = 27/114 (23%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRK----KPCFVCGSLEHGVRQCSKAQD------CFICKK 230
+ C+ CGEEGH A C S + C CG H R+C CF C K
Sbjct: 245 RACHKCGEEGHFARECPSGGGGGGGGGRACRKCGEEGHFARECPSGGGGGGGRGCFKCGK 304
Query: 231 GGHRAKDCPDK---------------HKSG--FQNAQVCLKCGDSGHDMFSCRN 267
GH+A+DC ++ + SG ++ C KCG+ GH C N
Sbjct: 305 DGHQARDCTEEGSSGGRSGGFRGGFGNSSGGDGKSDTACRKCGEEGHFARECPN 358
>gi|146104175|ref|XP_001469750.1| putative universal minicircle sequence binding protein [Leishmania
infantum JPCM5]
gi|398024244|ref|XP_003865283.1| universal minicircle sequence binding protein, putative [Leishmania
donovani]
gi|134074120|emb|CAM72862.1| putative universal minicircle sequence binding protein [Leishmania
infantum JPCM5]
gi|322503520|emb|CBZ38606.1| universal minicircle sequence binding protein, putative [Leishmania
donovani]
Length = 115
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGH 233
++CYNCGE GHM+ +C S ++ K C+ CGS +H R+C+ + C+ C GH
Sbjct: 26 RSCYNCGETGHMSRDCPSE-RKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGH 84
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
++DCP++ K + C CG + H
Sbjct: 85 LSRDCPNERK-----PKSCYNCGSTDH 106
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKD 237
TCY CGE GHM+ +C R+A R C+ CG H R C K + C+ C H +++
Sbjct: 5 TCYKCGEAGHMSRSCPRAAATRS--CYNCGETGHMSRDCPSERKPKSCYNCGSTDHLSRE 62
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C ++ K+G + + C CG +GH C N
Sbjct: 63 CTNEAKAG-ADTRSCYNCGGTGHLSRDCPN 91
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R ++CYNCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 42 PSERKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGHLSRDCPNERKPKSCYNC 101
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 102 GSTDHLSRECPDRH 115
>gi|339245201|ref|XP_003378526.1| zinc finger CCHC domain-containing protein 9 [Trichinella spiralis]
gi|316972556|gb|EFV56229.1| zinc finger CCHC domain-containing protein 9 [Trichinella spiralis]
Length = 275
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 44/91 (48%), Gaps = 8/91 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK--PCFVCGSLEHGVRQC-SKAQD-----CFICKKGGHR 234
CY C ++GH NC +K CF CGSLEH ++ C SKA CF+C GH
Sbjct: 113 CYCCRKKGHTLANCERNNDTQKLGVCFKCGSLEHTLKNCKSKANGLPYAFCFVCNGHGHL 172
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
AK C + + N C KCG H + C
Sbjct: 173 AKSCKENPNGIYPNGGSCKKCGSIYHLVKDC 203
>gi|242068929|ref|XP_002449741.1| hypothetical protein SORBIDRAFT_05g022420 [Sorghum bicolor]
gi|241935584|gb|EES08729.1| hypothetical protein SORBIDRAFT_05g022420 [Sorghum bicolor]
Length = 261
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
AKDCPDKHK + +CL+CG++GHDMF C N Y DD+
Sbjct: 2 AKDCPDKHKRNDHQSTLCLRCGETGHDMFGCTNDYPQDDI 41
>gi|157876783|ref|XP_001686734.1| putative universal minicircle sequence binding protein [Leishmania
major strain Friedlin]
gi|68129809|emb|CAJ09115.1| putative universal minicircle sequence binding protein [Leishmania
major strain Friedlin]
Length = 115
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 13/87 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGH 233
++CYNCGE GHM+ +C S ++ K C+ CGS +H R+C+ + C+ C GH
Sbjct: 26 RSCYNCGETGHMSRDCPSE-RKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGH 84
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
++DCP++ K + C CG + H
Sbjct: 85 LSRDCPNERK-----PKSCYNCGSTDH 106
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKD 237
TCY CGE GHM+ +C R+A R C+ CG H R C K + C+ C H +++
Sbjct: 5 TCYKCGEAGHMSRSCPRAAATRS--CYNCGETGHMSRDCPSERKPKSCYNCGSTDHLSRE 62
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C ++ K+G + + C CG +GH C N
Sbjct: 63 CTNEAKAG-ADTRSCYNCGGTGHLSRDCPN 91
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R ++CYNCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 42 PSERKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGHLSRDCPNERKPKSCYNC 101
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 102 GSTDHLSRECPDRH 115
>gi|15233440|ref|NP_195326.1| cellular nucleic acid-binding protein [Arabidopsis thaliana]
gi|75318587|sp|O65639.1|CSP1_ARATH RecName: Full=Cold shock protein 1; Short=AtCSP1; AltName:
Full=Cold shock domain-containing protein 1
gi|3036806|emb|CAA18496.1| glycine-rich protein [Arabidopsis thaliana]
gi|7270554|emb|CAB81511.1| glycine-rich protein [Arabidopsis thaliana]
gi|110741941|dbj|BAE98911.1| glycine-rich protein [Arabidopsis thaliana]
gi|332661203|gb|AEE86603.1| cellular nucleic acid-binding protein [Arabidopsis thaliana]
Length = 299
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 183 CYNCGEEGHMAVNC---------RSAVKRKKPCFVCGSLEHGVRQCSK----AQDCFICK 229
CY CG+ GH A +C RS C+ CG + H R C+ ++ C+ C
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH A+DC + G N C KCG GH
Sbjct: 260 GSGHLARDCDQRGSGGGGNDNACYKCGKEGH 290
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 43/107 (40%), Gaps = 29/107 (27%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK---------PCFVCGSLEHGVRQCSKAQ---------- 223
CYNCG+ GH A +C SA + C+ CG + H R C++
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 224 -----DCFICKKGGHRAKDCPDK-----HKSGFQNAQVCLKCGDSGH 260
C+ C GH A+DC K +SG + C CG GH
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGH 240
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 29/122 (23%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---------CFVCGSLEHGVRQCSKAQD--------- 224
CYNCGE GH++ +C C+ CG H R C+ A +
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 225 ----CFICKKGGHRAKDCPDKH-KSGFQNAQV------CLKCGDSGHDMFSCRNSYSLDD 273
C+ C GH A+DC K +G Q V C CGD GH C + +
Sbjct: 162 GNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVGHFARDCTQKVAAGN 221
Query: 274 LK 275
++
Sbjct: 222 VR 223
>gi|154345732|ref|XP_001568803.1| putative universal minicircle sequence binding protein (UMSBP)
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|134066145|emb|CAM43935.1| putative universal minicircle sequence binding protein (UMSBP)
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 276
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 183 CYNCGEEGHMAVNCRSAV----KRKKPCFVCGSLEHGVRQC--------SKAQDCFICKK 230
C NCG+EGH A C A +R CF CG H R+C + A CF C +
Sbjct: 18 CRNCGKEGHYARECPEADAKGDERSTTCFRCGEAGHMSRECPNEAKSGAAGAMACFRCGE 77
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH ++DCP+ K G C KCG GH
Sbjct: 78 AGHMSRDCPNSAKPGAAKGFECYKCGQEGH 107
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 53/128 (41%), Gaps = 31/128 (24%)
Query: 182 TCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
TC+ CGE GHM+ C +S CF CG H R C +K +C+ C
Sbjct: 44 TCFRCGEAGHMSRECPNEAKSGAAGAMACFRCGEAGHMSRDCPNSAKPGAAKGFECYKCG 103
Query: 230 KGGHRAKDCPDKH----------------KSGFQNAQVCLKCGDSGHDMFSCRNS---YS 270
+ GH ++DCP + G+ + C KCGD+GH C NS YS
Sbjct: 104 QEGHLSRDCPSSQGGGRGGYGQKRGRNGAQGGYGGDRTCYKCGDAGHISRDCPNSQGGYS 163
Query: 271 LDDLKVCL 278
+ C
Sbjct: 164 GAGDRTCY 171
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 34/133 (25%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD---------- 224
G C+ CGE GHM+ +C ++ K C+ CG H R C +Q
Sbjct: 68 GAMACFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGGRGGYGQKR 127
Query: 225 --------------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRNS 268
C+ C GH ++DCP+ + G+ A + C KCG+SGH C NS
Sbjct: 128 GRNGAQGGYGGDRTCYKCGDAGHISRDCPNS-QGGYSGAGDRTCYKCGESGHISRDCPNS 186
Query: 269 ---YSLDDLKVCL 278
YS + C
Sbjct: 187 QGGYSGAGDRTCY 199
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 21/111 (18%)
Query: 179 GWQTCYNCGEEGHMAVNCRS-----AVKRKKPCFVCGSLEHGVRQCSKA----------- 222
G +TCY CGE GH++ +C + + + C+ CG H R+C +A
Sbjct: 166 GDRTCYKCGESGHISRDCPNSQGGYSGAGDRTCYKCGKPGHMSRECPEAGGSYGGSRGGG 225
Query: 223 -QDCFICKKGGHRAKDCPDKHKSGFQNA----QVCLKCGDSGHDMFSCRNS 268
+ C+ C K GH +++CP+ S + + C KCGDSGH C +S
Sbjct: 226 DRTCYKCGKPGHMSRECPEAGGSYGGSRGGGDRTCYKCGDSGHISRDCPSS 276
>gi|42558260|ref|NP_976048.1| zinc finger CCHC domain-containing protein 13 [Homo sapiens]
gi|71152962|sp|Q8WW36.1|ZCH13_HUMAN RecName: Full=Zinc finger CCHC domain-containing protein 13
gi|18088951|gb|AAH21176.1| Zinc finger, CCHC domain containing 13 [Homo sapiens]
gi|119619053|gb|EAW98647.1| zinc finger, CCHC domain containing 13, isoform CRA_b [Homo
sapiens]
gi|167774083|gb|ABZ92476.1| zinc finger, CCHC domain containing 13 [synthetic construct]
gi|190689697|gb|ACE86623.1| zinc finger, CCHC domain containing 13 protein [synthetic
construct]
gi|190691059|gb|ACE87304.1| zinc finger, CCHC domain containing 13 protein [synthetic
construct]
Length = 166
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQC--SKAQDCFICKKGGHRAKDCP 239
CYNCG GH+A +C+ + R++ C+ CG L H R C K Q C+ C K GH KDC
Sbjct: 67 CYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDC- 125
Query: 240 DKHKSGFQNAQV-CLKCGDSGHDMFSC 265
AQV C +CG+ GH +C
Sbjct: 126 ---------AQVKCYRCGEIGHVAINC 143
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGHRAK 236
TCY CGE G A NC V C+ CG H + C + Q C+ C + GH A+
Sbjct: 46 TCYCCGESGRNAKNC---VLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLAR 102
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGH 260
DC D+ Q Q C CG GH
Sbjct: 103 DC-DR-----QKEQKCYSCGKLGH 120
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
DP Q CY CG GH+A +C ++++ C+ CG L H + C++ + C+ C + GH
Sbjct: 82 DPKRERRQHCYTCGRLGHLARDCDR--QKEQKCYSCGKLGHIQKDCAQVK-CYRCGEIGH 138
Query: 234 RAKDC 238
A +C
Sbjct: 139 VAINC 143
>gi|729704|sp|Q04832.1|HEXP_LEIMA RecName: Full=DNA-binding protein HEXBP; AltName:
Full=Hexamer-binding protein
gi|159342|gb|AAA29245.1| HEXBP DNA binding protein [Leishmania major]
Length = 271
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAV----KRKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
+C NCG+EGH A C A +R CF CG H R+C + A CF C
Sbjct: 17 SCRNCGKEGHYARECPEADSKGDERSTTCFRCGEEGHMSRECPNEARSGAAGAMTCFRCG 76
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+ GH ++DCP+ K G C KCG GH
Sbjct: 77 EAGHMSRDCPNSAKPGAAKGFECYKCGQEGH 107
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 31/119 (26%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD---------- 224
G TC+ CGE GHM+ +C ++ K C+ CG H R C +Q
Sbjct: 68 GAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYKCGQEGHLSRDCPSSQGGSRGGYGQKR 127
Query: 225 --------------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRN 267
C+ C GH ++DCP+ + G+ A + C KCGD+GH C N
Sbjct: 128 GRSGAQGGYSGDRTCYKCGDAGHISRDCPNG-QGGYSGAGDRTCYKCGDAGHISRDCPN 185
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 15/96 (15%)
Query: 179 GWQTCYNCGEEGHMAVNCRS-----AVKRKKPCFVCGSLEHGVRQCSKAQD--------- 224
G +TCY CG+ GH++ +C + + + C+ CG H R C Q
Sbjct: 138 GDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRK 197
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C+ C + GH +++CP +G + + C KCG GH
Sbjct: 198 CYKCGESGHMSRECPSAGSTGSGD-RACYKCGKPGH 232
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 32/109 (29%)
Query: 183 CYNCGEEGHMAVNCRSAV---------KRKKP-----------CFVCGSLEHGVRQCSKA 222
CY CG+EGH++ +C S+ KR + C+ CG H R C
Sbjct: 99 CYKCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYSGDRTCYKCGDAGHISRDCPNG 158
Query: 223 QD---------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGH 260
Q C+ C GH ++DCP+ + G+ A + C KCG+SGH
Sbjct: 159 QGGYSGAGDRTCYKCGDAGHISRDCPNG-QGGYSGAGDRKCYKCGESGH 206
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 20/108 (18%)
Query: 179 GWQTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKA-------QD 224
G +TCY CG+ GH++ +C A RK C+ CG H R+C A +
Sbjct: 166 GDRTCYKCGDAGHISRDCPNGQGGYSGAGDRK--CYKCGESGHMSRECPSAGSTGSGDRA 223
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNA----QVCLKCGDSGHDMFSCRNS 268
C+ C K GH +++CP+ S + + C KCG++GH C +S
Sbjct: 224 CYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
>gi|326483283|gb|EGE07293.1| zinc knuckle domain-containing protein [Trichophyton equinum CBS
127.97]
Length = 210
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 26/109 (23%)
Query: 181 QTCYNCGEEGHMAVNC----------------------RSAVKRKKPCFVCGSLEHGVRQ 218
Q CY CG+ GH+A NC R + C+ CG H R
Sbjct: 106 QECYKCGQVGHIARNCSQQGGSGYGGGYGNSGSGSYGSGGYGGRSQTCYSCGGYGHMARD 165
Query: 219 CSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C++ Q C+ C + GH ++DCP + K +VC KC +GH +C N
Sbjct: 166 CTQGQKCYNCGEVGHVSRDCPTEAK----GERVCYKCKQAGHVQAACPN 210
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 18/85 (21%)
Query: 171 RYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-------- 222
R D P +G TCYNCG +GH++ C K K C+ CG H R+C +
Sbjct: 38 RARDCPKKGTPTCYNCGGQGHVSRECTQPPKEKS-CYRCGMTGHISRECPSSGSGDNNYS 96
Query: 223 ---------QDCFICKKGGHRAKDC 238
Q+C+ C + GH A++C
Sbjct: 97 GGYSGGSGGQECYKCGQVGHIARNC 121
>gi|115385941|ref|XP_001209517.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114187964|gb|EAU29664.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 184
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 15/98 (15%)
Query: 181 QTCYNCGEEGHMAVNC-----------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
Q CY CG GH+A NC R++ C+ CG H R C+ Q C+ C
Sbjct: 91 QECYKCGRVGHIARNCPQGGSYGGGFGGGYGGRQQTCYSCGGFGHMARDCTHGQKCYNCG 150
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ GH ++DCP + K +VC C GH +C N
Sbjct: 151 EVGHVSRDCPTEAKG----ERVCYNCKQPGHVQAACPN 184
>gi|407044490|gb|EKE42624.1| zinc finger protein, putative [Entamoeba nuttalli P19]
Length = 389
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 7/67 (10%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGG 232
++G C+ CGE GH++ +C +A ++ CFVCG H R C KA+ CFIC + G
Sbjct: 287 NKGSDCCFICGETGHISKDCPNAERK---CFVCGKTGHKSRDCPKAKGNNRPCFICGEIG 343
Query: 233 HRAKDCP 239
H +DCP
Sbjct: 344 HLDRDCP 350
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 183 CYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCSKAQ-DCFICKKGGHRAKDCPD 240
C CGE GH + +C ++ K CF+CG H + C A+ CF+C K GH+++DCP
Sbjct: 269 CIICGEIGHTSKDCPQNENKGSDCCFICGETGHISKDCPNAERKCFVCGKTGHKSRDCP- 327
Query: 241 KHKSGFQNAQVCLKCGDSGH 260
K K N + C CG+ GH
Sbjct: 328 KAKG---NNRPCFICGEIGH 344
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 206 CFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C +CG + H + C + ++ CFIC + GH +KDCP+ + C CG +GH
Sbjct: 269 CIICGEIGHTSKDCPQNENKGSDCCFICGETGHISKDCPNAERK-------CFVCGKTGH 321
Query: 261 DMFSC 265
C
Sbjct: 322 KSRDC 326
>gi|167380673|ref|XP_001735408.1| cellular nucleic acid binding protein [Entamoeba dispar SAW760]
gi|165902631|gb|EDR28401.1| cellular nucleic acid binding protein, putative [Entamoeba dispar
SAW760]
Length = 390
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 7/67 (10%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGG 232
++G C+ CGE GH++ +C +A ++ CFVCG H R C KA+ CFIC + G
Sbjct: 287 NKGTDCCFICGEPGHISKDCPNAERK---CFVCGKTGHKSRDCPKAKGNNRPCFICGEIG 343
Query: 233 HRAKDCP 239
H +DCP
Sbjct: 344 HLDRDCP 350
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 183 CYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCSKAQ-DCFICKKGGHRAKDCPD 240
C CGE GH + C ++ K CF+CG H + C A+ CF+C K GH+++DCP
Sbjct: 269 CIICGEIGHTSKGCPQNENKGTDCCFICGEPGHISKDCPNAERKCFVCGKTGHKSRDCP- 327
Query: 241 KHKSGFQNAQVCLKCGDSGH 260
K K N + C CG+ GH
Sbjct: 328 KAKG---NNRPCFICGEIGH 344
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 206 CFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C +CG + H + C + ++ CFIC + GH +KDCP+ + C CG +GH
Sbjct: 269 CIICGEIGHTSKGCPQNENKGTDCCFICGEPGHISKDCPNAERK-------CFVCGKTGH 321
Query: 261 DMFSC 265
C
Sbjct: 322 KSRDC 326
>gi|225710484|gb|ACO11088.1| DNA-binding protein HEXBP [Caligus rogercresseyi]
Length = 397
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDCPD 240
C+ CG+EGH + C +V CF CG + H R+C CF CK+ GH ++DCP+
Sbjct: 280 CFKCGKEGHFSRECTESVGGSN-CFKCGEVGHFSRECPTGGGDKCFNCKQEGHISRDCPE 338
Query: 241 KHKSGFQNAQVCLKCGDSGH 260
K C C ++GH
Sbjct: 339 KRNVS------CYNCNETGH 352
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAK 236
G C+ CGE GH + C + K CF C H R C + ++ C+ C + GH ++
Sbjct: 298 GGSNCFKCGEVGHFSRECPTGGGDK--CFNCKQEGHISRDCPEKRNVSCYNCNETGHMSR 355
Query: 237 DCP 239
+CP
Sbjct: 356 ECP 358
>gi|341875989|gb|EGT31924.1| hypothetical protein CAEBREN_06592 [Caenorhabditis brenneri]
Length = 395
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 182 TCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKA-------QDCFICKKGG 232
C++C E GH +C R++ CF CGS+EH + +C K CF+CK+ G
Sbjct: 234 ACFHCREPGHRLADCPKRNSSHSDGVCFKCGSMEHSIHECKKKGVKGFPFATCFVCKQVG 293
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
H ++DC + + C CG GH
Sbjct: 294 HISRDCHQNLNGVYPDGGACNVCGAVGH 321
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
CF C++ GHR DCP ++ S + VC KCG H + C+
Sbjct: 235 CFHCREPGHRLADCPKRNSS--HSDGVCFKCGSMEHSIHECK 274
>gi|358369000|dbj|GAA85616.1| zinc knuckle domain protein [Aspergillus kawachii IFO 4308]
Length = 144
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 46/94 (48%), Gaps = 11/94 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-------RKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
Q CY CG GH+A NC + R++ C+ CG H R C+ Q C+ C + GH
Sbjct: 55 QECYKCGRVGHIARNCPQSGGYGGGFGGRQQTCYSCGGFGHMARDCTNGQKCYNCGEVGH 114
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
++DCP + K +VC C GH +C N
Sbjct: 115 VSRDCPTEAKG----ERVCYNCKQPGHVQAACPN 144
>gi|294943015|ref|XP_002783737.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
gi|239896385|gb|EER15533.1| cellular nucleic acid binding protein, putative [Perkinsus marinus
ATCC 50983]
Length = 110
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 17/91 (18%)
Query: 181 QTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKAQD----CFICK 229
Q C+ C E GH A NC A +R + C+ CG +H R C K Q CF C+
Sbjct: 8 QACFICNETGHYARNCPRQFDDDSRARRRPQNCYNCGQPDHLARDCPKDQSNDRPCFKCQ 67
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+ GH A+DCP + + C +CG SGH
Sbjct: 68 QVGHFARDCPSA------DTRNCFRCGQSGH 92
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 170 PRYFDPPDRGW---QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--QD 224
PR FD R Q CYNCG+ H+A +C +PCF C + H R C A ++
Sbjct: 24 PRQFDDDSRARRRPQNCYNCGQPDHLARDCPKDQSNDRPCFKCQQVGHFARDCPSADTRN 83
Query: 225 CFICKKGGHRAKDCP 239
CF C + GH A++CP
Sbjct: 84 CFRCGQSGHLARECP 98
>gi|67467476|ref|XP_649839.1| zinc finger protein [Entamoeba histolytica HM-1:IMSS]
gi|56466350|gb|EAL44453.1| zinc finger protein, putative [Entamoeba histolytica HM-1:IMSS]
gi|449701896|gb|EMD42631.1| zinc finger protein, putative [Entamoeba histolytica KU27]
Length = 389
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 7/67 (10%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGG 232
++G C+ CGE GH++ +C +A ++ CFVCG H R C KA+ CFIC + G
Sbjct: 287 NKGSDCCFICGETGHISKDCPNAERK---CFVCGKTGHKSRDCPKAKGNNRPCFICGEIG 343
Query: 233 HRAKDCP 239
H +DCP
Sbjct: 344 HLDRDCP 350
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 6/80 (7%)
Query: 183 CYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCSKAQ-DCFICKKGGHRAKDCPD 240
C CG+ GH + +C ++ K CF+CG H + C A+ CF+C K GH+++DCP
Sbjct: 269 CIICGKIGHTSKDCPQNENKGSDCCFICGETGHISKDCPNAERKCFVCGKTGHKSRDCP- 327
Query: 241 KHKSGFQNAQVCLKCGDSGH 260
K K N + C CG+ GH
Sbjct: 328 KAKG---NNRPCFICGEIGH 344
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 206 CFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C +CG + H + C + ++ CFIC + GH +KDCP+ + C CG +GH
Sbjct: 269 CIICGKIGHTSKDCPQNENKGSDCCFICGETGHISKDCPNAERK-------CFVCGKTGH 321
Query: 261 DMFSC 265
C
Sbjct: 322 KSRDC 326
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
C IC K GH +KDCP G + C CG++GH C N+
Sbjct: 269 CIICGKIGHTSKDCPQNENKG---SDCCFICGETGHISKDCPNA 309
>gi|157877134|ref|XP_001686898.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|68129973|emb|CAJ09281.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 566
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
CY C + GHM C + C+ CG+ H + C CF C GHR+ +CP +
Sbjct: 128 CYQCHQLGHMMTTCP-----QTRCYNCGTFGHSSQICHSKPHCFHCSHSGHRSSECPMRS 182
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K +VC +C + GH+ +C
Sbjct: 183 K-----GRVCYQCNEPGHEAANC 200
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD-- 240
C++C GH + C K + C+ C H C + Q C +C + GH CP+
Sbjct: 165 CFHCSHSGHRSSECPMRSKGRV-CYQCNEPGHEAANCPQGQLCRMCHRPGHFVAHCPEVV 223
Query: 241 -------KHKSGFQNAQVCLKCGDSGHDMFSCRNSY 269
H +G + C CG + H+ C Y
Sbjct: 224 CNLCHLKGHTAGVCDNVHCDNCGRN-HETVHCHQPY 258
>gi|114689169|ref|XP_529043.2| PREDICTED: zinc finger CCHC domain-containing protein 13 [Pan
troglodytes]
gi|397507945|ref|XP_003824438.1| PREDICTED: zinc finger CCHC domain-containing protein 13-like [Pan
paniscus]
Length = 170
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQC--SKAQDCFICKKGGHRAKDCP 239
CYNCG GH+A +C+ + R++ C+ CG L H R C K Q C+ C K GH KDC
Sbjct: 67 CYNCGRSGHIAKDCKEPKRERRQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDC- 125
Query: 240 DKHKSGFQNAQV-CLKCGDSGHDMFSC 265
AQV C +CG+ GH +C
Sbjct: 126 ---------AQVKCYRCGEIGHVAINC 143
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ--DCFICKKGGHRAKDC 238
Q CY+CG+ GH+ +C + VK C+ CG + H CSK + C+ C K GH AK+C
Sbjct: 110 QKCYSCGKLGHIQKDC-AQVK----CYRCGEIGHVAINCSKTRPGQCYRCGKSGHLAKEC 164
Query: 239 PD 240
P
Sbjct: 165 PS 166
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CY CG GH+A +C ++++ C+ CG L H + C++ + C+ C + GH
Sbjct: 82 EPKRERRQHCYTCGRLGHLARDCDR--QKEQKCYSCGKLGHIQKDCAQVK-CYRCGEIGH 138
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
A +C K + G C +CG SGH
Sbjct: 139 VAINC-SKTRPG-----QCYRCGKSGH 159
>gi|350403681|ref|XP_003486874.1| PREDICTED: hypothetical protein LOC100747634 [Bombus impatiens]
Length = 447
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---CFVCGSLEHGVRQCSKAQD-------CFICKKGG 232
C++C + GH +C + CF CGS EH +C A+ CFIC++ G
Sbjct: 325 CFHCRKSGHNLSDCPELGSEQAGTGICFKCGSTEHTHFECKVAKPMEFRYATCFICREQG 384
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
H AK CPD K + C CGD H
Sbjct: 385 HIAKQCPDNPKGIYPQGGACKICGDVTH 412
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 9/53 (16%)
Query: 216 VRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQ--VCLKCGDSGHDMFSCR 266
+R+C CF C+K GH DCP+ G + A +C KCG + H F C+
Sbjct: 320 IRKCV----CFHCRKSGHNLSDCPE---LGSEQAGTGICFKCGSTEHTHFECK 365
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVK---RKKPCFVCGSLEHGVRQCS--------KAQDCFI 227
G C+ CG H C+ A R CF+C H +QC + C I
Sbjct: 347 GTGICFKCGSTEHTHFECKVAKPMEFRYATCFICREQGHIAKQCPDNPKGIYPQGGACKI 406
Query: 228 CKKGGHRAKDCPD 240
C H KDCPD
Sbjct: 407 CGDVTHLKKDCPD 419
>gi|444321188|ref|XP_004181250.1| hypothetical protein TBLA_0F01890 [Tetrapisispora blattae CBS 6284]
gi|387514294|emb|CCH61731.1| hypothetical protein TBLA_0F01890 [Tetrapisispora blattae CBS 6284]
Length = 451
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 61/147 (41%), Gaps = 24/147 (16%)
Query: 127 EIEDQSVIVRKEEQKVETADNGDEGVTTVEISDNIVLRKLLRGP-RYF----DPPDRGWQ 181
+I+D+S I T DN +T E+ DN + LRG RYF D ++
Sbjct: 44 KIDDKSAIF--------TDDNKSVALTIEEVDDNKEELRALRGQGRYFGLEDDNLNKLEP 95
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE-HGVRQCSKAQDCFICKKGGHRAKDCPD 240
C NC + GH+ NC + C CG L+ H + C KA C C + GH CP
Sbjct: 96 KCNNCSQRGHLKKNCPHVI-----CTYCGVLDDHYSQHCPKAIICSNCNESGHYKSKCPQ 150
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRN 267
K K F C C H C N
Sbjct: 151 KWKRKF-----CTMCNSKIHSRDRCPN 172
>gi|326516278|dbj|BAJ92294.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 480
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 70/194 (36%), Gaps = 80/194 (41%)
Query: 155 VEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEE------------------------- 189
V +SDN VLRKLLR P YFDP + +TC+NCGEE
Sbjct: 146 VPVSDNTVLRKLLRIPGYFDPGETILETCFNCGEEGHVAVNCPMEKRKKPCFVCGLFGHN 205
Query: 190 ----------------GHMAVNC---RSAVKRK--KPCFVCGSLEHGVRQCS-------- 220
GHMA +C + + R+ C CG H + CS
Sbjct: 206 AKQCTQGQECFICKKGGHMAKDCPDKHTKITRQCTALCLRCGETGHDMFGCSNDYPLDDV 265
Query: 221 KAQDCFICKKGGH--------------RAKDCPDKHKSGFQNAQ------------VCLK 254
K C++CK+ GH +C +G A+ +C K
Sbjct: 266 KEIKCYVCKQNGHLCCTDFADSCSKEVTCYNCAQSGHTGLGCAKQRRETSVATTPTLCYK 325
Query: 255 CGDSGHDMFSCRNS 268
CG+ GH C NS
Sbjct: 326 CGEDGHFARGCTNS 339
>gi|332079156|gb|AEE00158.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 448
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMSQVTTSANIMMQKGNFKGPRRIV-------KCFNCGKEGHLARNCRAP--RKKGCWK 415
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 416 CGKEGHQMKDCTERQANFLGK 436
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 392 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 426
>gi|213403956|ref|XP_002172750.1| zf-CCHC type zinc finger protein [Schizosaccharomyces japonicus
yFS275]
gi|212000797|gb|EEB06457.1| zf-CCHC type zinc finger protein [Schizosaccharomyces japonicus
yFS275]
Length = 215
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-----QDCFICKKGGHRAKD 237
C+ C ++GH+ +C + K CF CGS EH + C+K CFICK GH A
Sbjct: 75 CFGCRKQGHILQDCPESGNSKAICFRCGSTEHTLSSCAKKGPLEFATCFICKAKGHLASK 134
Query: 238 CPDKHKSGFQNAQVCLKCGDSGH 260
CPD K + C C H
Sbjct: 135 CPDNPKGLYPRGGGCKLCSSVHH 157
>gi|403416646|emb|CCM03346.1| predicted protein [Fibroporia radiculosa]
Length = 641
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 21/128 (16%)
Query: 183 CYNCGEEG-HMAVNCRSAVKRKKPCFVCGSL-EHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C NCG EG H C + C CG+ EH R C ++ CF C GH KDCP+
Sbjct: 295 CKNCGAEGDHKTYECPVLI-----CLTCGARDEHSTRSCPISKTCFNCGMKGHINKDCPN 349
Query: 241 KHKSGFQNAQV---CLKCGDSGHDMFSCRNSYSLDDLKVCLYFLVQYLAFCIMQSLLVSF 297
+H SG +A C +CG H C L+ L +Y+ Q++L +
Sbjct: 350 RH-SGRNSANYFNDCDRCGARSHTSDEC----------PTLWRLYEYVDDTERQNILQTR 398
Query: 298 KSLEFVCI 305
++ + + +
Sbjct: 399 EAKQTLAL 406
>gi|401420040|ref|XP_003874509.1| putative poly-zinc finger protein 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490745|emb|CBZ26009.1| putative poly-zinc finger protein 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 135
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CG GH + C SA PCF CG H ++C ++ CF C+K GHRA+D
Sbjct: 3 CYRCGGVGHQSRECTSAAD-SAPCFRCGKPGHVAKECVSTITAEEAPCFYCQKPGHRARD 61
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
CPD +C C GH C N
Sbjct: 62 CPDAPPK--SETVMCYNCSQKGHIASECPN 89
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 27/104 (25%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK-PCFVCGSLEHGVRQCSKAQD----------------- 224
C+ CG+ GH+A C S + ++ PCF C H R C A
Sbjct: 25 CFRCGKPGHVAKECVSTITAEEAPCFYCQKPGHRARDCPDAPPKSETVMCYNCSQKGHIA 84
Query: 225 --------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C++C + GH + CP K + C KCG GH
Sbjct: 85 SECPNPAHCYLCNEDGHIGRSCPTAPKRSVAE-KSCRKCGKKGH 127
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 15/102 (14%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQT----CYNCGEEGHMAVNCRSAVKRKKP 205
E V+T+ + G R D PD ++ CYNC ++GH+A C +
Sbjct: 37 ECVSTITAEEAPCFYCQKPGHRARDCPDAPPKSETVMCYNCSQKGHIASECPNPAH---- 92
Query: 206 CFVCGSLEHGVRQCSKA-------QDCFICKKGGHRAKDCPD 240
C++C H R C A + C C K GH KDCP+
Sbjct: 93 CYLCNEDGHIGRSCPTAPKRSVAEKSCRKCGKKGHLRKDCPE 134
>gi|145238910|ref|XP_001392102.1| cellular nucleic acid-binding protein [Aspergillus niger CBS
513.88]
gi|134076603|emb|CAK45156.1| unnamed protein product [Aspergillus niger]
Length = 171
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Query: 181 QTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
Q CY CG GH+A NC R++ C+ CG H R C+ Q C+ C + GH
Sbjct: 82 QECYKCGRVGHIARNCPQSGGYSGGFGGRQQTCYSCGGFGHMARDCTNGQKCYNCGEVGH 141
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
++DCP + K +VC C GH +C N
Sbjct: 142 VSRDCPTEAKG----ERVCYNCKQPGHVQAACPN 171
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 50/110 (45%), Gaps = 16/110 (14%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C A K K C+ CG + H R+C +
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSRECTVAPKEKS-CYRCGGVGHISRECQASPAEGFGAAAGG 80
Query: 223 -QDCFICKKGGHRAKDCPDKHKSGFQNA---QVCLKCGDSGHDMFSCRNS 268
Q+C+ C + GH A++CP Q C CG GH C N
Sbjct: 81 GQECYKCGRVGHIARNCPQSGGYSGGFGGRQQTCYSCGGFGHMARDCTNG 130
>gi|120843|sp|P24736.3|GAG_HV1U4 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains:
RecName: Full=Matrix protein p17; Short=MA; Contains:
RecName: Full=Capsid protein p24; Short=CA; Contains:
RecName: Full=Spacer peptide p2; Contains: RecName:
Full=Nucleocapsid protein p7; Short=NC; Contains:
RecName: Full=Spacer peptide p1; Contains: RecName:
Full=p6-gag
gi|328905|gb|AAA75018.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQQTSIMMQRGNFRGPRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 411 GKEGHQMKDCTERQANFLGK 430
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + + CF C K GH AK+C
Sbjct: 345 ACQGVGGPGHKARVLAEAMSQVQQTSIM--MQRGNFRGPRRIKCFNCGKEGHLAKNCRAP 402
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 RKKG------CWKCGKEGHQMKDC 420
>gi|414591599|tpg|DAA42170.1| TPA: hypothetical protein ZEAMMB73_148737 [Zea mays]
Length = 256
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 29/40 (72%)
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
AKDCPDKHK + +C++CG++GHDMF C N Y DD+
Sbjct: 2 AKDCPDKHKRNDHQSTLCIRCGETGHDMFGCANDYPPDDI 41
>gi|383858908|ref|XP_003704941.1| PREDICTED: uncharacterized protein LOC100880872 [Megachile
rotundata]
Length = 430
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 10/88 (11%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSKAQD-------CFICKKGG 232
C++C + GH +C +S CF CGS EH +C A+ CFIC++ G
Sbjct: 296 CFHCRKSGHNLSDCPELQSEQAGTGICFKCGSTEHTHFECKVAKPTEFRYATCFICREQG 355
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
H AK CPD K + C CGD H
Sbjct: 356 HIAKQCPDNPKGVYPQGGCCKICGDVTH 383
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
CF C+K GH DCP+ +S +C KCG + H F C+
Sbjct: 296 CFHCRKSGHNLSDCPE-LQSEQAGTGICFKCGSTEHTHFECK 336
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 14/115 (12%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVK---RKKPCFVCGSLEHGVRQCSKAQD--------CFI 227
G C+ CG H C+ A R CF+C H +QC C I
Sbjct: 318 GTGICFKCGSTEHTHFECKVAKPTEFRYATCFICREQGHIAKQCPDNPKGVYPQGGCCKI 377
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKVCLYFLV 282
C H KDCPD K +N ++ D+ S N++ L + + +Y L+
Sbjct: 378 CGDVTHLKKDCPDLIKEKEENTITVNTIANT--DIESLENNFVLHRMFI-VYILM 429
>gi|340057209|emb|CCC51551.1| putative universal minicircle sequence binding protein (UMSBP)
[Trypanosoma vivax Y486]
Length = 198
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 15/120 (12%)
Query: 175 PPDR-GWQTCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQCSK-------A 222
PP G + CYNCG+ GH++ C AV + CF CG H R C
Sbjct: 37 PPGAMGDRACYNCGQPGHLSRECPTMPHGAVGGARACFTCGQFGHLSRDCPGMRGAGFGG 96
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH---DMFSCRNSYSLDDLKVCLY 279
+ C+ C + GH ++DCP + C CG GH D + R +Y + C +
Sbjct: 97 RACYNCGQPGHISRDCPGMRGGSSFGGRSCYNCGKVGHISRDCPTARGAYGGPQTRSCYH 156
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 179 GWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQC--------SKAQDCFI 227
G +CY CGE GH A C + + C+ CG H R+C A+ CF
Sbjct: 16 GASSCYRCGEAGHFARECTNVPPGAMGDRACYNCGQPGHLSRECPTMPHGAVGGARACFT 75
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C + GH ++DCP +GF + C CG GH
Sbjct: 76 CGQFGHLSRDCPGMRGAGF-GGRACYNCGQPGH 107
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 179 GWQTCYNCGEEGHMAVNCRS----AVKRKKPCFVCGSLEHGVRQCSKAQ---------DC 225
G + CYNCG+ GH++ +C + + C+ CG + H R C A+ C
Sbjct: 95 GGRACYNCGQPGHISRDCPGMRGGSSFGGRSCYNCGKVGHISRDCPTARGAYGGPQTRSC 154
Query: 226 FICKKGGHRAKDCPDKHKSG-FQNAQVCLKCGDSGHDMFSC 265
+ C++ GH A+DCP+ G + C CG GH +C
Sbjct: 155 YHCQQEGHIARDCPNAPADGAVRGGGACYNCGQPGHISRAC 195
>gi|261192892|ref|XP_002622852.1| zinc knuckle domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|239588987|gb|EEQ71630.1| zinc knuckle domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|327352663|gb|EGE81520.1| hypothetical protein BDDG_04462 [Ajellomyces dermatitidis ATCC
18188]
Length = 190
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 23/106 (21%)
Query: 181 QTCYNCGEEGHMAVNC-------------------RSAVKRKKPCFVCGSLEHGVRQCSK 221
Q CY CG+ GH+A NC R++ C+ CG H R C++
Sbjct: 89 QECYKCGQVGHIARNCSQSGGYGSAGYGGAGGYGGGYGGGRQQTCYSCGGYGHMARDCTQ 148
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
Q C+ C + GH ++DCP + K +VC KC +GH +C N
Sbjct: 149 GQKCYNCGEVGHVSRDCPTEAK----GERVCYKCKQTGHVQAACPN 190
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 20/84 (23%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C +A ++K C+ CG H R C+ A
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSREC-TAAPKEKTCYRCGQTGHISRDCTSAGSGDNYTSGGY 80
Query: 223 --------QDCFICKKGGHRAKDC 238
Q+C+ C + GH A++C
Sbjct: 81 SGGGAAGGQECYKCGQVGHIARNC 104
>gi|358395603|gb|EHK44990.1| hypothetical protein TRIATDRAFT_166172, partial [Trichoderma
atroviride IMI 206040]
Length = 404
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 22/102 (21%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAK 236
+CYNCG EGH +C K C CG H + +C + + C C K GH AK
Sbjct: 265 SCYNCGNEGHRVRDCPEPRVDKFACKNCGKSGHKIAECPEPPNMDNVECRKCNKTGHFAK 324
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGH-----------DMFSCRN 267
DCPD ++ C CG GH D+ +CRN
Sbjct: 325 DCPDG------GSRACRNCGQEGHISKDCDQPRNMDLVTCRN 360
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 38/94 (40%), Gaps = 27/94 (28%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDC 238
G C+ CGEEGH C +A +AQ C CKK GH KDC
Sbjct: 42 GNDKCFGCGEEGHRRAECPNA---------------------EAQTCRYCKKEGHMVKDC 80
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
PDK C CG+ GH C N+ ++
Sbjct: 81 PDKP------PMTCGNCGEEGHFRKDCENARKVN 108
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 17/99 (17%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
DRG CYNC E H + C +EH + C+ C GHR +
Sbjct: 231 DRGLPKCYNCSELSHTSKACTQE-----------RVEHASEK--PKISCYNCGNEGHRVR 277
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
DCP+ F C CG SGH + C ++D+++
Sbjct: 278 DCPEPRVDKF----ACKNCGKSGHKIAECPEPPNMDNVE 312
>gi|340722932|ref|XP_003399853.1| PREDICTED: hypothetical protein LOC100652207 [Bombus terrestris]
Length = 463
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 10/88 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---CFVCGSLEHGVRQCSKAQD-------CFICKKGG 232
C++C + GH +C + CF CGS EH +C A+ CFIC++ G
Sbjct: 325 CFHCRKSGHNLSDCPELGSEQAGTGICFKCGSTEHTHFECKVAKPMEFRYATCFICREQG 384
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
H AK CPD K + C CGD H
Sbjct: 385 HIAKQCPDNPKGIYPQGGACKICGDVTH 412
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 9/59 (15%)
Query: 216 VRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQ--VCLKCGDSGHDMFSCRNSYSLD 272
+R+C CF C+K GH DCP+ G + A +C KCG + H F C+ + ++
Sbjct: 320 IRKCV----CFHCRKSGHNLSDCPE---LGSEQAGTGICFKCGSTEHTHFECKVAKPME 371
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 11/73 (15%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVK---RKKPCFVCGSLEHGVRQCS--------KAQDCFI 227
G C+ CG H C+ A R CF+C H +QC + C I
Sbjct: 347 GTGICFKCGSTEHTHFECKVAKPMEFRYATCFICREQGHIAKQCPDNPKGIYPQGGACKI 406
Query: 228 CKKGGHRAKDCPD 240
C H KDCPD
Sbjct: 407 CGDVTHLKKDCPD 419
>gi|380479291|emb|CCF43107.1| hypothetical protein CH063_12905 [Colletotrichum higginsianum]
Length = 221
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 15/98 (15%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQC--SKAQDCFICKKGGHR 234
+ C+NCG+ GH +C +KP C CG H R+C + A C +C + GH
Sbjct: 45 RACFNCGQSGHSKADCPEP---RKPFDGTCRGCGQEGHTRRECPDTPAMTCRVCGEEGHI 101
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
+DCP K VC C + GHD+ C+ +D
Sbjct: 102 RRDCPQK------PPDVCRNCHEEGHDVVDCKAPRKID 133
>gi|255931619|ref|XP_002557366.1| Pc12g05190 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581985|emb|CAP80146.1| Pc12g05190 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 182
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 21/106 (19%)
Query: 179 GWQTCYNCGEEGHMAVNC-----------------RSAVKRKKPCFVCGSLEHGVRQCSK 221
G Q CY CG+ GH+A NC A R++ C+ CG H R C++
Sbjct: 81 GSQECYKCGQVGHIARNCSQGGNYGGYSAGGYGGFGGAGGRQQTCYSCGGFGHMARDCTQ 140
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
Q C+ C + GH ++DCP + K ++C KC GH +C N
Sbjct: 141 GQKCYNCGEVGHVSRDCPTEAKG----ERMCYKCKQPGHVQSACPN 182
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQC---SKAQDCFIC 228
F P RG C+NCGE H A +C P + C H R+C +K + C+ C
Sbjct: 3 FPPAGRGG--CFNCGEASHQAKDCPKKGNPTCPNSYNCNGQGHLSRECQEPAKEKSCYRC 60
Query: 229 KKGGHRAKDCPDKHKSGF-QNAQVCLKCGDSGHDMFSC 265
+ GH +++CP S + +Q C KCG GH +C
Sbjct: 61 GQTGHLSRECPQGGDSNYGGGSQECYKCGQVGHIARNC 98
>gi|444729593|gb|ELW70004.1| Zinc finger CCHC domain-containing protein 9 [Tupaia chinensis]
Length = 270
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C +A++ + C+ CGS EH + +C D CF+C
Sbjct: 129 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 188
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
+ GH ++ CPD K + + C CG H M C S + D +
Sbjct: 189 GEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLMKDCPKSQNSDRM 234
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+
Sbjct: 119 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCK 170
>gi|239613570|gb|EEQ90557.1| zinc knuckle domain-containing protein [Ajellomyces dermatitidis
ER-3]
Length = 185
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 23/106 (21%)
Query: 181 QTCYNCGEEGHMAVNC-------------------RSAVKRKKPCFVCGSLEHGVRQCSK 221
Q CY CG+ GH+A NC R++ C+ CG H R C++
Sbjct: 84 QECYKCGQVGHIARNCSQSGGYGSAGYGGAGGYGGGYGGGRQQTCYSCGGYGHMARDCTQ 143
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
Q C+ C + GH ++DCP + K +VC KC +GH +C N
Sbjct: 144 GQKCYNCGEVGHVSRDCPTEAK----GERVCYKCKQTGHVQAACPN 185
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 46/118 (38%)
Query: 181 QTCYNCGEEGHMAVNCRSA---------------VKRKKPCFVCGSLEHGVRQCS----- 220
+TCY CG+ GH++ +C SA + C+ CG + H R CS
Sbjct: 46 KTCYRCGQTGHISRDCTSAGSGDNYTSGGYSGGGAAGGQECYKCGQVGHIARNCSQSGGY 105
Query: 221 ------------------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+ Q C+ C GH A+DC Q C CG+ GH
Sbjct: 106 GSAGYGGAGGYGGGYGGGRQQTCYSCGGYGHMARDCTQ--------GQKCYNCGEVGH 155
>gi|347828477|emb|CCD44174.1| hypothetical protein [Botryotinia fuckeliana]
Length = 503
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 14/97 (14%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-------DCFICKKGGHRA 235
C+NCGEEGH C K + C+ CG H +C+ C IC++ GHRA
Sbjct: 73 CFNCGEEGHSKAECTQPPKARS-CYNCGEEGHTKAECTNPAVAREFTGTCRICEQSGHRA 131
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
CP ++C C + GH + C+N ++
Sbjct: 132 SGCPSAP------PKLCNNCKEEGHSILECKNPRKIE 162
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRS----AVKRKKPCFVCGSLEHGVRQCSKAQD----C 225
+P DRG C C E GH +C + + CF C + H VR C ++ C
Sbjct: 281 EPVDRGVPLCSRCNELGHTVKHCTEERVDGERVQVQCFNCSEIGHRVRDCPIPREDKFAC 340
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
CKK GH +K+CP+ + C C + GH
Sbjct: 341 RNCKKSGHSSKECPEPRSA---EGVECKNCNEIGH 372
>gi|327294357|ref|XP_003231874.1| zinc knuckle transcription factor [Trichophyton rubrum CBS 118892]
gi|326465819|gb|EGD91272.1| zinc knuckle transcription factor [Trichophyton rubrum CBS 118892]
Length = 471
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
TC NCG+ GH A C K CF CG H C + C IC+K GH A +
Sbjct: 52 TCRNCGQAGHFARECPEPRKPSGACFNCGQEGHNKSDCPNPRVFTGTCRICEKEGHPAAE 111
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKV 276
CPD+ +C C GH C + L+ V
Sbjct: 112 CPDRP------PDICKNCKGEGHKTMECTENRKLEQHNV 144
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
C NC + GH A +C+ A + C CG H +C++ + +C C + GH A D
Sbjct: 295 CVNCKQPGHRARDCKEARVDRFACRNCGYGGHRSNECTEPRSAEGVECKRCNEVGHFAND 354
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CP S + C CG H C
Sbjct: 355 CPQGGGS-----RACRNCGSEDHIARDC 377
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 20/117 (17%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCR---SAVKR-KKPCFVCGSLEHGVRQCSKAQ-DCFICK 229
P DR C NCG+ GH+ +C+ S V+R + C C H R C +A+ D F C+
Sbjct: 260 PLDRQIPKCSNCGKMGHIMKSCKEELSVVERVEVKCVNCKQPGHRARDCKEARVDRFACR 319
Query: 230 K---GGHRAKDCPDKHKSGFQNAQVCLKCGDSGH---------DMFSCRNSYSLDDL 274
GGHR+ +C + + C +C + GH +CRN S D +
Sbjct: 320 NCGYGGHRSNECTEPRSA---EGVECKRCNEVGHFANDCPQGGGSRACRNCGSEDHI 373
>gi|433935|emb|CAA53777.1| UMS binding protein [Crithidia fasciculata]
Length = 116
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKDC 238
TCY CGE GHM+ C A + C+ CG H R+C K + C+ C H +++C
Sbjct: 6 TCYKCGEAGHMSRECPKAAASRT-CYNCGQTGHLSRECPSERKPKACYNCGSTEHLSREC 64
Query: 239 PDKHKSGFQNAQVCLKCGDSGH 260
P++ K+G +++ C CG +GH
Sbjct: 65 PNEAKTG-ADSRTCYNCGQTGH 85
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-------SKAQDCFI 227
P +TCYNCG+ GH++ C S ++ K C+ CGS EH R+C + ++ C+
Sbjct: 21 PKAAASRTCYNCGQTGHLSRECPSE-RKPKACYNCGSTEHLSRECPNEAKTGADSRTCYN 79
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C + GH +++CP + K + C CG + H
Sbjct: 80 CGQTGHLSRECPSERK-----PKRCYNCGSTEH 107
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R + CYNCG H++ C + K + C+ CG H R+C K + C+ C
Sbjct: 43 PSERKPKACYNCGSTEHLSRECPNEAKTGADSRTCYNCGQTGHLSRECPSERKPKRCYNC 102
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 103 GSTEHLSRECPDRH 116
>gi|401420364|ref|XP_003874671.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490907|emb|CBZ26171.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 566
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
CY C + GH+ C + C+ CG+ H + C CF C GHR+ +CP +
Sbjct: 128 CYQCHQLGHIMTTCP-----QTRCYNCGTFGHSSQICHSKPHCFHCSHSGHRSSECPMRS 182
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K +VC +C + GH+ +C
Sbjct: 183 K-----GRVCYQCNEPGHEAANC 200
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 11/96 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD-- 240
C++C GH + C K + C+ C H C + Q C +C + GH CP+
Sbjct: 165 CFHCSHSGHRSSECPMRSKGRV-CYQCNEPGHEAANCPQGQLCRMCHRPGHFVAHCPEVV 223
Query: 241 -------KHKSGFQNAQVCLKCGDSGHDMFSCRNSY 269
H +G + C CG + H+ C Y
Sbjct: 224 CNLCHVKGHTAGVCDNVHCDNCGRN-HETVHCHQPY 258
>gi|326475301|gb|EGD99310.1| Zinc knuckle transcription factor (CnjB) [Trichophyton tonsurans
CBS 112818]
Length = 494
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
TC NCG+ GH A C K CF CG H C + C +C+K GH A +
Sbjct: 52 TCRNCGQAGHFARECPEPRKPSGACFNCGQEGHNKSDCPNPRVFTGTCRVCEKEGHPAAE 111
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKV 276
CPD+ +C C GH C + L+ V
Sbjct: 112 CPDRP------PDICKNCKGEGHKTMECTENRKLEQHNV 144
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 20/117 (17%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCR---SAVKR-KKPCFVCGSLEHGVRQCSKAQ----DCF 226
P DR C NCG+ GH+ +C+ S V+R + C C H R C +A+ C
Sbjct: 281 PFDRQIPKCSNCGKMGHIMKSCKEELSVVERVEVKCVNCKQPGHRARDCKEARVDRFACR 340
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH---------DMFSCRNSYSLDDL 274
C KGGHR+ D+ + C +C + GH +CRN S D +
Sbjct: 341 NCGKGGHRSN---DRTEPRSAEGVECKRCNEVGHFAKDCPQGGGSRACRNCGSEDHI 394
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 10/97 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVR-----QCSKAQDCFICKKGGHRAKD 237
C NC + GH A +C+ A + C CG H + ++ +C C + GH AKD
Sbjct: 316 CVNCKQPGHRARDCKEARVDRFACRNCGKGGHRSNDRTEPRSAEGVECKRCNEVGHFAKD 375
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
CP S + C CG H C ++ ++
Sbjct: 376 CPQGGGS-----RACRNCGSEDHIARDCDQPRNMANV 407
>gi|154346046|ref|XP_001568960.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066302|emb|CAM44093.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 573
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
CY C + GHM C + C+ CG+ H + C CF C GHR+ +CP +
Sbjct: 135 CYQCHQLGHMMTTCP-----QTRCYNCGTFGHSSQICHSKPHCFQCSHSGHRSSECPMRS 189
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K ++C +C + GH+ +C
Sbjct: 190 K-----GRLCYQCNEPGHEAANC 207
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 11/96 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD-- 240
C+ C GH + C K + C+ C H C + Q C +C + GH CP+
Sbjct: 172 CFQCSHSGHRSSECPMRSKGRL-CYQCNEPGHEAANCPQGQLCRMCHRPGHFVARCPEVV 230
Query: 241 -------KHKSGFQNAQVCLKCGDSGHDMFSCRNSY 269
H +G + C CG + H+ C Y
Sbjct: 231 CNLCHVKGHTAGVCDNVHCDNCGRN-HETVHCHQQY 265
>gi|154288428|ref|XP_001545009.1| hypothetical protein HCAG_02056 [Ajellomyces capsulatus NAm1]
gi|150408650|gb|EDN04191.1| hypothetical protein HCAG_02056 [Ajellomyces capsulatus NAm1]
Length = 191
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 25/108 (23%)
Query: 181 QTCYNCGEEGHMAVNC---------------------RSAVKRKKPCFVCGSLEHGVRQC 219
Q CY CG+ GH+A NC R++ C+ CG H R C
Sbjct: 88 QECYKCGQVGHIARNCSQSGGYGSGGYGGATGGGYSGGYGGGRQQTCYSCGGYGHMARDC 147
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
++ Q C+ C + GH ++DCP + K +VC KC GH +C N
Sbjct: 148 TQGQKCYNCGEVGHVSRDCPTEAK----GERVCYKCKQPGHVQATCPN 191
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 49/139 (35%), Gaps = 52/139 (37%)
Query: 164 RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSA-----------------VKRKKPC 206
R+LL G P +TCY CG+ GH++ +C SA + C
Sbjct: 33 RELLPGRECTAAPKE--KTCYRCGQAGHISRDCTSAGSGDSYGNSGGYSGGGGAAGGQEC 90
Query: 207 FVCGSLEHGVRQCS-------------------------KAQDCFICKKGGHRAKDCPDK 241
+ CG + H R CS + Q C+ C GH A+DC
Sbjct: 91 YKCGQVGHIARNCSQSGGYGSGGYGGATGGGYSGGYGGGRQQTCYSCGGYGHMARDC--- 147
Query: 242 HKSGFQNAQVCLKCGDSGH 260
Q C CG+ GH
Sbjct: 148 -----TQGQKCYNCGEVGH 161
>gi|82568572|dbj|BAE48529.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 881
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+NCG EGH+A NCR+ RKK C+ CG H ++ C++ Q F + + K
Sbjct: 390 CFNCGREGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFFRENLAFQGKAGELSS 447
Query: 243 KSGFQNAQVCLKCGDSGHDMF 263
+ N+ K GD G D F
Sbjct: 448 EQTRANSPTSRKLGDGGRDNF 468
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + + ++ G + K CF C + GH A++C
Sbjct: 350 CQGVGGPSHKARVLAEAMSNAQHVNIM--MQRGNFKGQKRIKCFNCGREGHLARNCRAPR 407
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 KKG------CWKCGKEGHQMKDC 424
>gi|21429778|gb|AAM50567.1| AT22983p [Drosophila melanogaster]
Length = 186
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRA 235
Q C+ C EEGH+A +CRS V R + CF CG+ H +C K CF+C G++A
Sbjct: 98 QRCFRCLEEGHIAAHCRSTVDRSQCCFRCGTAGHKA-ECPKEAKCFLCASRGNQA 151
>gi|326919350|ref|XP_003205944.1| PREDICTED: cellular nucleic acid-binding protein-like [Meleagris
gallopavo]
Length = 134
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 13/96 (13%)
Query: 168 RGPRYF--DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDC 225
RG +Y+ +P Q CYNCG+ GH+A +C A K+K C+ CG H + C+K + C
Sbjct: 38 RGGKYYCKEPKREREQCCYNCGKPGHLARDCDHADKQK--CYSCGEFGHIQKDCTKVK-C 94
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
+ C + GH A C + ++V C +CG SGH
Sbjct: 95 YRCGETGHVAISCS-------KTSEVNCYRCGKSGH 123
>gi|213404984|ref|XP_002173264.1| cellular nucleic acid-binding protein [Schizosaccharomyces
japonicus yFS275]
gi|212001311|gb|EEB06971.1| cellular nucleic acid-binding protein [Schizosaccharomyces
japonicus yFS275]
Length = 175
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Query: 175 PPD-RGWQTCYNCGEEGHMAVNCRSA--VKRKKP------CFVCGSLEHGVRQCSKAQDC 225
PP+ R CY CG GH+A CR++ +P C+ CGS H R C++ C
Sbjct: 74 PPNPRANAECYKCGRVGHIARACRTSGPAAGGRPGRSNLNCYACGSFGHQARDCTQGVKC 133
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ C K GHR+ +C +SG Q+C KC GH C
Sbjct: 134 YSCGKTGHRSFEC---EQSG--GGQLCYKCNQPGHIAVDC 168
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 23/103 (22%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP---CFVCGSLEHGVRQCSKAQ------------DC 225
+ CYNCG GH+ +C +A + C+ CG + H R C + +C
Sbjct: 55 KACYNCGTAGHLVRDCPTAPPNPRANAECYKCGRVGHIARACRTSGPAAGGRPGRSNLNC 114
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
+ C GH+A+DC K C CG +GH F C S
Sbjct: 115 YACGSFGHQARDCTQGVK--------CYSCGKTGHRSFECEQS 149
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 20/116 (17%)
Query: 169 GPRYFDPPDRGWQT--------CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS 220
GPR ++ + G Q CYNC + GH A C S +R+K C+ CG+ H VR C
Sbjct: 13 GPRCYNCNEIGHQARECVKGSICYNCNQTGHKANEC-SEPQREKACYNCGTAGHLVRDCP 71
Query: 221 KAQ-------DCFICKKGGHRAKDC----PDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A +C+ C + GH A+ C P ++ C CG GH C
Sbjct: 72 TAPPNPRANAECYKCGRVGHIARACRTSGPAAGGRPGRSNLNCYACGSFGHQARDC 127
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 169 GPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA---QDC 225
GP P R CY CG GH A +C VK C+ CG H +C ++ Q C
Sbjct: 100 GPAAGGRPGRSNLNCYACGSFGHQARDCTQGVK----CYSCGKTGHRSFECEQSGGGQLC 155
Query: 226 FICKKGGHRAKDC 238
+ C + GH A DC
Sbjct: 156 YKCNQPGHIAVDC 168
>gi|400594711|gb|EJP62544.1| cellular nucleic acid-binding protein [Beauveria bassiana ARSEF
2860]
Length = 179
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 13/107 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA------QDCFI 227
D P +G CYNCG EGH++ C +K K C+ CG H R+C A +C+
Sbjct: 29 DCPSKGPAKCYNCGNEGHLSRECSEPMKENKSCYKCGQPGHLSRECPTAGGNGQSTECYK 88
Query: 228 CKKGGHRAKDCPDKHKSGFQNA-------QVCLKCGDSGHDMFSCRN 267
C + GH A+ C G A + C CG GH C N
Sbjct: 89 CGEMGHIARHCTKSSYGGSYGASYNGGAGKTCYSCGGYGHMSRECVN 135
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 14/96 (14%)
Query: 183 CYNCGEEGHMAVNCRSAV-----------KRKKPCFVCGSLEHGVRQCSKAQDCFICKKG 231
CY CGE GH+A +C + K C+ CG H R+C C+ C +
Sbjct: 86 CYKCGEMGHIARHCTKSSYGGSYGASYNGGAGKTCYSCGGYGHMSRECVNGMRCYNCGES 145
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH ++DCP + G ++C KC SGH +C N
Sbjct: 146 GHYSRDCPKESTGG---EKICYKCQQSGHVQAACPN 178
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 10/97 (10%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----QDCFICKKG 231
P RG CY+CG GH A +C S K C+ CG+ H R+CS+ + C+ C +
Sbjct: 12 PSRG--ACYSCGNSGHQARDCPSKGPAK--CYNCGNEGHLSRECSEPMKENKSCYKCGQP 67
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
GH +++CP +G + C KCG+ GH C S
Sbjct: 68 GHLSRECPTAGGNG--QSTECYKCGEMGHIARHCTKS 102
>gi|429849218|gb|ELA24622.1| zinc knuckle domain protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 185
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 23/115 (20%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC----------SKAQDC 225
P+RG CYNCG EGHM+ +C K K C+ CG H R C + + +C
Sbjct: 28 PNRGAAKCYNCGNEGHMSRDCPEGPKDTKSCYRCGQAGHISRDCPQGGNVGGGGASSSEC 87
Query: 226 FICKKGGHRAKDCPDK-----------HKSGFQNA--QVCLKCGDSGHDMFSCRN 267
+ C + GH A++CP + G+ A + C CG GH C N
Sbjct: 88 YKCGEVGHIARNCPKSGGGYGGGGACYNSGGYGGASQKTCYSCGGYGHMSRDCTN 142
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 20/102 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVK-----------------RKKPCFVCGSLEHGVRQCSKAQDC 225
CY CGE GH+A NC + +K C+ CG H R C+ C
Sbjct: 87 CYKCGEVGHIARNCPKSGGGYGGGGACYNSGGYGGASQKTCYSCGGYGHMSRDCTNGSKC 146
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ C + GH ++DCP + G ++C KC GH C N
Sbjct: 147 YNCGENGHFSRDCPKESSGG---EKICYKCQQPGHVQSQCPN 185
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKA----QDCFIC 228
PP R TC+ CG GH A C R A K C+ CG+ H R C + + C+ C
Sbjct: 9 PPAR---TCFTCGAAGHQARECPNRGAAK----CYNCGNEGHMSRDCPEGPKDTKSCYRC 61
Query: 229 KKGGHRAKDCPDKHKSGFQNAQV--CLKCGDSGHDMFSCRNS 268
+ GH ++DCP G A C KCG+ GH +C S
Sbjct: 62 GQAGHISRDCPQGGNVGGGGASSSECYKCGEVGHIARNCPKS 103
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 198 SAVKRKKPCFVCGSLEHGVRQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKC 255
SA + CF CG+ H R+C A C+ C GH ++DCP+ G ++ + C +C
Sbjct: 6 SAAPPARTCFTCGAAGHQARECPNRGAAKCYNCGNEGHMSRDCPE----GPKDTKSCYRC 61
Query: 256 GDSGH 260
G +GH
Sbjct: 62 GQAGH 66
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRA 235
+TCY+CG GHM+ +C + K C+ CG H R C K C+ C++ GH
Sbjct: 125 KTCYSCGGYGHMSRDCTNGSK----CYNCGENGHFSRDCPKESSGGEKICYKCQQPGHVQ 180
Query: 236 KDCPD 240
CP+
Sbjct: 181 SQCPN 185
>gi|346716306|ref|NP_001231149.1| zinc finger CCHC domain-containing protein 9 [Sus scrofa]
Length = 270
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 70/170 (41%), Gaps = 29/170 (17%)
Query: 129 EDQSVIVRKEEQKVETADNGDEGVTTVEISDNIVL----------RKLLRGPRYFDPPDR 178
ED + + Q + NG+E + E+ I L R+L R +
Sbjct: 70 EDVNGFMEYLRQNSQMVHNGEEIADSQEVRQEIALALKKDSRREGRRLKR-----QAAKK 124
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD---------- 224
C++C + GH +C +A++ ++ C+ CGS EH + +C D
Sbjct: 125 NAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEIIKCKAQVDPALGEFPFAK 184
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
CF+C + GH ++ CPD K + + C CG H C S + D +
Sbjct: 185 CFVCGEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDCPESKNSDQM 234
>gi|157876790|ref|XP_001686737.1| putative poly-zinc finger protein 2 [Leishmania major strain
Friedlin]
gi|68129812|emb|CAJ09118.1| putative poly-zinc finger protein 2 [Leishmania major strain
Friedlin]
Length = 135
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CG GH + C SA PCF CG H R+C ++ CF C+K GHRA++
Sbjct: 3 CYRCGGVGHQSRECTSAAD-SAPCFRCGKPGHVARECVSTITAEEAPCFYCQKPGHRARE 61
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
CP+ +C C GH C N
Sbjct: 62 CPEAPPK--SETVICYNCSQKGHIASECTN 89
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 27/104 (25%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK-PCFVCGSLEHGVRQCSKAQD----------------- 224
C+ CG+ GH+A C S + ++ PCF C H R+C +A
Sbjct: 25 CFRCGKPGHVARECVSTITAEEAPCFYCQKPGHRARECPEAPPKSETVICYNCSQKGHIA 84
Query: 225 --------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C++C + GH + CP K + + C KCG GH
Sbjct: 85 SECTNPAHCYLCNEDGHIGRSCPTAPKRSVAD-KTCRKCGRKGH 127
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-------QDCFI 227
PP CYNC ++GH+A C + C++C H R C A + C
Sbjct: 66 PPKSETVICYNCSQKGHIASECTNPAH----CYLCNEDGHIGRSCPTAPKRSVADKTCRK 121
Query: 228 CKKGGHRAKDCPD 240
C + GH KDCPD
Sbjct: 122 CGRKGHLRKDCPD 134
>gi|340378247|ref|XP_003387639.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Amphimedon queenslandica]
Length = 201
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA--------QDCFICKKGG 232
+ C+ C + GH +C++ CF CGS EH V+ C CFIC + G
Sbjct: 71 KVCFKCRQPGHHLEDCKNNNDELNICFKCGSTEHSVKSCKAVVPSGSYPFAQCFICGESG 130
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLK 275
H ++ CPD + + N C CG H +C ++ K
Sbjct: 131 HLSRSCPDNPRGLYPNGGGCKVCGSVEHFKANCPEKFNSSKPK 173
>gi|170778684|gb|ACB36742.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S NI+++K R PR C+NCG+EGH+A NCR+A RKK C+
Sbjct: 365 EAMSQVTNSANIMMQKSSFRSPRKIV-------KCFNCGKEGHIARNCRAA--RKKGCWK 415
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 416 CGKEGHQMKDCTERQANFLGK 436
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + R K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVTNSANIMMQKSSFRSPRKIVKCFNCGKEGHIARNCRAA 408
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 409 RKKG------CWKCGKEGHQMKDC 426
>gi|50761973|ref|XP_424900.1| PREDICTED: zinc finger CCHC domain-containing protein 9 [Gallus
gallus]
Length = 235
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRK----KPCFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C E GH +C + ++ + C+ CGS EH + +C D CFIC
Sbjct: 95 CFHCREPGHGVADCPAVLESQDMGTGICYRCGSTEHDIGKCKAKIDPAVGAFPYAKCFIC 154
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKV 276
+ GH ++ CPD K + C CG H C + +LD + V
Sbjct: 155 GEMGHLSRSCPDNPKGLYAEGGCCRLCGSVEHYRKDCPENQNLDQVTV 202
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
A CF C++ GH DCP +S +C +CG + HD+ C+
Sbjct: 92 AMVCFHCREPGHGVADCPAVLESQDMGTGICYRCGSTEHDIGKCK 136
>gi|296412703|ref|XP_002836061.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629863|emb|CAZ80218.1| unnamed protein product [Tuber melanosporum]
Length = 183
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 16/93 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVK----------RKKPCFVCGSLEHGVRQCSKAQDCFICKKGG 232
CY CG+ GH+A C ++ R++ C+ CG H R C++ Q C+ C + G
Sbjct: 91 CYKCGKVGHIARQCTASGAGYGGPPGGGARQQTCYSCGGYGHLSRDCTQGQKCYNCGQIG 150
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
H ++DCP + +VC KC GH M SC
Sbjct: 151 HLSRDCPSEQD------RVCYKCKQPGHVMASC 177
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDC 238
QTCY+CG GH++ +C K C+ CG + H R C QD C+ CK+ GH C
Sbjct: 122 QTCYSCGGYGHLSRDCTQGQK----CYNCGQIGHLSRDCPSEQDRVCYKCKQPGHVMASC 177
Query: 239 PD 240
P+
Sbjct: 178 PE 179
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCS---KAQDCFICKKGGHRAK 236
+ CYNCGE GH A R KR P C+ CG + R C+ K + C+ C + GH ++
Sbjct: 10 RACYNCGEGGHQA---RECPKRGTPVCYNCGRMFFPRRDCTGPAKEKSCYRCGQTGHLSR 66
Query: 237 DCPDKHK---------SGFQNAQVCLKCGDSGHDMFSCRNS 268
DC D + G C KCG GH C S
Sbjct: 67 DCNDAPQQVGSFGGGSYGSGGGAECYKCGKVGHIARQCTAS 107
>gi|328834534|gb|AEB52933.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 12/81 (14%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V+ S NI+++K RGPR C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMSQVQ-STNIMMQKSNFRGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 413
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ +
Sbjct: 414 CGKEGHQMKDCTERQANFLGR 434
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|170093301|ref|XP_001877872.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647731|gb|EDR11975.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 133
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 44/95 (46%), Gaps = 16/95 (16%)
Query: 182 TCYNCGEEGHMAVNCRSAV------KRKKPCFVCGSLEHGVRQCSKAQD---------CF 226
TC+ C E+GH A NC A K C+ CGS H + +C K D CF
Sbjct: 17 TCFACREKGHAAKNCPKATTEDGKGKSVGICYRCGSTRHTLSRCKKPADTENPMPFASCF 76
Query: 227 ICKKGGHRAKDCP-DKHKSGFQNAQVCLKCGDSGH 260
+C GH A CP +K K + N C CGD+ H
Sbjct: 77 VCSGKGHLASACPQNKAKGVYPNGGCCKICGDTAH 111
>gi|307206122|gb|EFN84202.1| Zinc finger CCHC domain-containing protein 9 [Harpegnathos
saltator]
Length = 404
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 26/128 (20%)
Query: 150 EGVTTVEISDNIVL------RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRK 203
+GV E+ I L R L R ++ C+NC + GH+ +C R+
Sbjct: 256 KGVPQSEVDIAIKLERRKAERALARAKKFL---------CFNCRKSGHVLSDCPELGGRE 306
Query: 204 KP----CFVCGSLEHGVRQCSKAQD-------CFICKKGGHRAKDCPDKHKSGFQNAQVC 252
+ CF CGS EH +C +D CFIC++ GH + CPD K + + C
Sbjct: 307 EAGTGICFKCGSTEHTHFECKVHKDSTYKYAKCFICREQGHISSQCPDNPKGVYPDGGCC 366
Query: 253 LKCGDSGH 260
CG H
Sbjct: 367 KICGAVTH 374
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 21/42 (50%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
CF C+K GH DCP+ +C KCG + H F C+
Sbjct: 286 CFNCRKSGHVLSDCPELGGREEAGTGICFKCGSTEHTHFECK 327
>gi|148668646|gb|EDL00965.1| zinc finger, CCHC domain containing 9, isoform CRA_a [Mus musculus]
Length = 271
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 50/107 (46%), Gaps = 14/107 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C + ++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
C + GH ++ CPD K + + C CG GH CR + + D +
Sbjct: 189 CGEMGHLSRSCPDNTKGVYADGGSCKLCGSVGHFKKDCRENQNSDRI 235
>gi|56266772|gb|AAV85016.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 48/81 (59%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
EG++ V+ + NI++ R +RG + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EGMSQVQNTTNIMMQRSNIRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 415 CGKEGHQMKNCTERQANFLGK 435
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M +C
Sbjct: 391 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKNC 425
>gi|326480350|gb|EGE04360.1| zinc knuckle transcription factor [Trichophyton equinum CBS 127.97]
Length = 473
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
TC NCG+ GH A C K CF CG H C + C +C+K GH A +
Sbjct: 52 TCRNCGQAGHFARECPEPRKPSGACFNCGQEGHNKSDCPNPRVFTGTCRVCEKEGHPAAE 111
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKV 276
CPD+ +C C GH C + L+ V
Sbjct: 112 CPDR------PPDICKNCKGEGHKTMECTENRKLEQHNV 144
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 51/117 (43%), Gaps = 20/117 (17%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCR---SAVKR-KKPCFVCGSLEHGVRQCSKAQ----DCF 226
P DR C NCG+ GH+ +C+ S V+R + C C H R C +A+ C
Sbjct: 260 PFDRQIPKCSNCGKMGHIMKSCKEELSVVERVEVKCVNCKQPGHRARDCKEARVDRFACR 319
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH---------DMFSCRNSYSLDDL 274
C KGGHR+ D+ + C +C + GH +CRN S D +
Sbjct: 320 NCGKGGHRSN---DRTEPRSAEGVECKRCNEVGHFAKDCPQGGGSRACRNCGSEDHI 373
>gi|227058023|gb|ACP18962.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 366 EAMSQVNSTNVLIQRSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 415
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 416 GKEGHQMKDCTERQANFLGK 435
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + V ++ + K CF C K GH A++C
Sbjct: 351 CQGVGGPGHKARVLAEAMSQVNSTNVL--IQRSNFRGPKRIKCFNCGKEGHLARNCRAPR 408
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 409 KKG------CWKCGKEGHQMKDC 425
>gi|227057985|gb|ACP18949.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQTNIMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQVQQTNIM--MQRGNFRGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|431907878|gb|ELK11485.1| Zinc finger CCHC domain-containing protein 9 [Pteropus alecto]
Length = 271
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C +A++ + C+ CGS EH + +C D CF+C
Sbjct: 130 CFHCRQPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
+ GH ++ CPD K + + C CG H C S S D +
Sbjct: 190 GEMGHLSRACPDNPKGLYADGGSCRLCGSVEHFKKDCPQSQSSDRM 235
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C++ GH DCP ++ +C +CG + H++ C+
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCK 171
>gi|409684246|gb|AFV34170.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ CYNCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K C+ C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCYNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|71756201|ref|XP_829015.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70834401|gb|EAN79903.1| nucleic acid binding protein, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261334955|emb|CBH17949.1| nucleic acid binding protein, putative [Trypanosoma brucei
gambiense DAL972]
Length = 516
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ C ++GH+ C + C+ CG+ H ++C C+ C GHR+ DCP +
Sbjct: 86 CFQCHQKGHLLPMCP-----QTRCYNCGNYGHSSQRCLSRPLCYHCSSTGHRSTDCPLRE 140
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K +VC +C GHDM C
Sbjct: 141 K-----GRVCYRCKKPGHDMAGC 158
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
CY+C GH + +C ++ + C+ C H + CS + CF C GH + CP
Sbjct: 123 CYHCSSTGHRSTDC-PLREKGRVCYRCKKPGHDMAGCSLSALCFTCNGEGHMSAQCPQIS 181
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
C +C GH C
Sbjct: 182 ---------CNRCNAKGHVAAQC 195
>gi|299929703|gb|ADJ58059.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSNVQHANVMMQRGNFKGPRSIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + ++ CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPRSIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|117581809|gb|ABK41339.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSNVQHTNVMMQRGNFKGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|22596338|gb|AAN03118.1|AF457064_1 gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQQTNVMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + V ++ G + K CF C K GH A++C
Sbjct: 348 CQGVGGPGHKARVLAEAMSQVQQTNVM--MQRGNFRGPKRIKCFNCGKEGHLARNCRAPR 405
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 KKG------CWKCGKEGHQMKDC 422
>gi|119196333|ref|XP_001248770.1| hypothetical protein CIMG_02541 [Coccidioides immitis RS]
Length = 300
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 166 LLRGPRYF-DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-- 222
++R P D P +G CYNCG +C K K C+ CG H R C +A
Sbjct: 144 MMRAPFVARDCPKKGSVICYNCGGR-----DCNEPAKEKS-CYRCGLTGHISRDCPQAGE 197
Query: 223 ------QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
Q+C+ C + GH +++CP +SG Q C KCG GH +C
Sbjct: 198 SGGARGQECYKCGQVGHISRECPQGGESGEARGQECYKCGQVGHISRNC 246
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 37/124 (29%)
Query: 181 QTCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQC--------SKAQDCFIC 228
++CY CG GH++ +C S R + C+ CG + H R+C ++ Q+C+ C
Sbjct: 177 KSCYRCGLTGHISRDCPQAGESGGARGQECYKCGQVGHISRECPQGGESGEARGQECYKC 236
Query: 229 KKGGHRAKDCPD------------KHKSGFQNA-------------QVCLKCGDSGHDMF 263
+ GH +++C ++ G + +VC KC GH
Sbjct: 237 GQVGHISRNCGQYSGYNGGGYNAGSYRYGGETGHVSRDCTTEGKGERVCYKCKQPGHVQA 296
Query: 264 SCRN 267
+C N
Sbjct: 297 ACPN 300
>gi|413925351|gb|AFW65283.1| hypothetical protein ZEAMMB73_494862 [Zea mays]
Length = 270
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 28/40 (70%)
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
AKDCPDKH+ + +CLKCG+ GHDMF C N Y DD+
Sbjct: 2 AKDCPDKHRRNDHQSTLCLKCGEIGHDMFGCTNDYPPDDI 41
>gi|299930159|gb|ADJ58287.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSNVQHANVMMQRGNFKGPRSIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + ++ CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPRSIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|429249296|gb|AFZ77692.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ + NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMSQAQQHTNIMMQKGIFKGPKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 415 CGKEGHQMKDCTERQANFLGK 435
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G+ + K CF C K GH AK+C K G C KCG GH M C
Sbjct: 378 MQKGIFKGPKRIKCFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKDC 425
>gi|295658168|ref|XP_002789646.1| DNA-binding protein HEXBP [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283131|gb|EEH38697.1| DNA-binding protein HEXBP [Paracoccidioides sp. 'lutzii' Pb01]
Length = 190
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 22/105 (20%)
Query: 181 QTCYNCGEEGHMAVNC------------------RSAVKRKKPCFVCGSLEHGVRQCSKA 222
Q CY CG+ GH+A NC R++ C+ CG H R C++
Sbjct: 90 QECYKCGQVGHIARNCSQGYSSGGYGSGAGGYGGGYGGNRQQTCYSCGGFGHMARDCTQG 149
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
Q C+ C + GH ++DCP + + +VC KC GH +C N
Sbjct: 150 QKCYNCGEVGHVSRDCPTE----VKGERVCYKCKQPGHVQAACPN 190
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 21/85 (24%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C +A ++K C+ CG H R C+ A
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSREC-TAAPKEKTCYRCGQGGHISRDCTSAGSGDSYTPSGG 80
Query: 223 ---------QDCFICKKGGHRAKDC 238
Q+C+ C + GH A++C
Sbjct: 81 YSGGGGASSQECYKCGQVGHIARNC 105
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 21/104 (20%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKA---QDCFICKKGGHR 234
G + C+NCG+ H A +C K+ P C+ CG H R+C+ A + C+ C +GGH
Sbjct: 6 GGRGCFNCGDASHQARDC---PKKGTPTCYNCGGQGHVSRECTAAPKEKTCYRCGQGGHI 62
Query: 235 AKDCPDKHKSG-------------FQNAQVCLKCGDSGHDMFSC 265
++DC SG ++Q C KCG GH +C
Sbjct: 63 SRDCTSA-GSGDSYTPSGGYSGGGGASSQECYKCGQVGHIARNC 105
>gi|225684876|gb|EEH23160.1| cellular nucleic acid-binding protein [Paracoccidioides
brasiliensis Pb03]
gi|226287748|gb|EEH43261.1| DNA-binding protein HEXBP [Paracoccidioides brasiliensis Pb18]
Length = 190
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 22/105 (20%)
Query: 181 QTCYNCGEEGHMAVNC------------------RSAVKRKKPCFVCGSLEHGVRQCSKA 222
Q CY CG+ GH+A NC R++ C+ CG H R C++
Sbjct: 90 QECYKCGQVGHIARNCSQGYGSGGYGGGAGGYGGGYGGNRQQTCYSCGGFGHMARDCTQG 149
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
Q C+ C + GH ++DCP + + +VC KC GH +C N
Sbjct: 150 QKCYNCGEVGHVSRDCPTE----VKGERVCYKCKQPGHVQAACPN 190
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 21/85 (24%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C +A ++K C+ CG H R C+ A
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSREC-TAAPKEKTCYRCGQGGHISRDCTSAGSGDSYTPSGG 80
Query: 223 ---------QDCFICKKGGHRAKDC 238
Q+C+ C + GH A++C
Sbjct: 81 YSGGGGASSQECYKCGQVGHIARNC 105
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 21/104 (20%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKA---QDCFICKKGGHR 234
G + C+NCG+ H A +C K+ P C+ CG H R+C+ A + C+ C +GGH
Sbjct: 6 GGRGCFNCGDASHQARDC---PKKGTPTCYNCGGQGHVSRECTAAPKEKTCYRCGQGGHI 62
Query: 235 AKDCPDKHKSG-------------FQNAQVCLKCGDSGHDMFSC 265
++DC SG ++Q C KCG GH +C
Sbjct: 63 SRDCTSA-GSGDSYTPSGGYSGGGGASSQECYKCGQVGHIARNC 105
>gi|358346811|ref|XP_003637458.1| Transcription elongation factor SPT6 [Medicago truncatula]
gi|355503393|gb|AES84596.1| Transcription elongation factor SPT6 [Medicago truncatula]
Length = 2159
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 16/100 (16%)
Query: 182 TCYNCGEEGHMAVNC------RSAVKRKKPCFVCGSLEHGVRQCSK---------AQDCF 226
TCY CGE GHMA +C C+ CG H R+C++ C+
Sbjct: 1489 TCYKCGESGHMARDCTQEGGGGGGRGGGGSCYKCGESGHMARECTQEGGGGGRGGGGTCY 1548
Query: 227 ICKKGGHRAKDCP-DKHKSGFQNAQVCLKCGDSGHDMFSC 265
C + GH A++C + G + C KCG+SGH C
Sbjct: 1549 KCGESGHMARECTQEGGGGGGRGGGACYKCGESGHMAREC 1588
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 42/103 (40%), Gaps = 19/103 (18%)
Query: 182 TCYNCGEEGHMAVNC------RSAVKRKKPCFVCGSLEHGVRQCSK----------AQDC 225
+CY CGE GHMA C C+ CG H R+C++ C
Sbjct: 1401 SCYKCGESGHMARECTQEGGGGGGRGGGGSCYKCGESGHMARECTQEGGGGGGRGGGGSC 1460
Query: 226 FICKKGGHRAKDCPDK---HKSGFQNAQVCLKCGDSGHDMFSC 265
+ C + GH A++C + G C KCG+SGH C
Sbjct: 1461 YKCGESGHMARECTQEGGGGGRGGGGGGTCYKCGESGHMARDC 1503
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 18/102 (17%)
Query: 182 TCYNCGEEGHMAVNC------RSAVKRKKPCFVCGSLEHGVRQCSK----------AQDC 225
C+ CGE GHMA C C+ CG H R+C++ C
Sbjct: 1372 ACHKCGESGHMARECTQEGGGGGGRGGGGSCYKCGESGHMARECTQEGGGGGGRGGGGSC 1431
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQV--CLKCGDSGHDMFSC 265
+ C + GH A++C + G C KCG+SGH C
Sbjct: 1432 YKCGESGHMARECTQEGGGGGGRGGGGSCYKCGESGHMAREC 1473
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 32/116 (27%)
Query: 182 TCYNCGEEGHMAVNC---------RSAVKRKKPCFVCGSLEHGVRQCSK----------- 221
CY CGE GHMA C R + C+ CG H R+C++
Sbjct: 1964 ACYKCGESGHMARECTQEGGGGGGRGGGRGGGACYKCGESGHMARECTQEGGGGGGWGGG 2023
Query: 222 -------AQDCFICKKGGHRAKDCPDK-----HKSGFQNAQVCLKCGDSGHDMFSC 265
C+ C + GH A++C + + G + C KCG+SGH C
Sbjct: 2024 GRGGGSGGGACYKCGESGHMARECTQEGGGGGGRGGGRGGGACYKCGESGHMAREC 2079
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 44/125 (35%), Gaps = 38/125 (30%)
Query: 182 TCYNCGEEGHMAVNC---------RSAVKRKKPCFVCGSLEHGVRQCSK----------- 221
CY CGE GHMA C R + C+ CG H R+C++
Sbjct: 2033 ACYKCGESGHMARECTQEGGGGGGRGGGRGGGACYKCGESGHMARECTQEGGGGGGGGWG 2092
Query: 222 ---------AQDCFICKKGGHRAKDCPDKHKSGFQNAQV---------CLKCGDSGHDMF 263
C+ C + GH A+DC + G C KCG+SGH
Sbjct: 2093 GGGRGGGSGGGACYKCGESGHMARDCTQEGGGGGGWGGGGRGGGSGGNCYKCGESGHFAR 2152
Query: 264 SCRNS 268
C S
Sbjct: 2153 ECPAS 2157
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 44/119 (36%), Gaps = 35/119 (29%)
Query: 182 TCYNCGEEGHMAVNC------------RSAVKRKKPCFVCGSLEHGVRQCSK-------- 221
CY CGE GHMA C R + C+ CG H R+C++
Sbjct: 1929 ACYKCGESGHMARECTQEGGGGRGGGGRGGGRGGGACYKCGESGHMARECTQEGGGGGGR 1988
Query: 222 -----AQDCFICKKGGHRAKDCPDK----------HKSGFQNAQVCLKCGDSGHDMFSC 265
C+ C + GH A++C + + G C KCG+SGH C
Sbjct: 1989 GGGRGGGACYKCGESGHMARECTQEGGGGGGWGGGGRGGGSGGGACYKCGESGHMAREC 2047
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 42/123 (34%), Gaps = 39/123 (31%)
Query: 182 TCYNCGEEGHMAVNC--------------RSAVKRKKPCFVCGSLEHGVRQCSK------ 221
CY CGE GHMA C R C+ CG H R+C++
Sbjct: 1996 ACYKCGESGHMARECTQEGGGGGGWGGGGRGGGSGGGACYKCGESGHMARECTQEGGGGG 2055
Query: 222 -------AQDCFICKKGGHRAKDCPDKHKSGFQNAQ------------VCLKCGDSGHDM 262
C+ C + GH A++C + G C KCG+SGH
Sbjct: 2056 GRGGGRGGGACYKCGESGHMARECTQEGGGGGGGGWGGGGRGGGSGGGACYKCGESGHMA 2115
Query: 263 FSC 265
C
Sbjct: 2116 RDC 2118
>gi|225710718|gb|ACO11205.1| Zinc finger CCHC domain-containing protein 9 [Caligus
rogercresseyi]
Length = 402
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 48/115 (41%), Gaps = 20/115 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP--------CFVCGSLEHGVRQC-SKAQD--------C 225
CY C + GH +C A K CF CGS EH + C SK + C
Sbjct: 256 CYLCRKPGHFLSDCPEAEGSKSAKTVGTMGSCFKCGSAEHSSKDCQSKLKGEAAYRFAVC 315
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY---SLDDLKVC 277
FIC + GH AK CPD K + C CG H C+ +D+K+C
Sbjct: 316 FICNQTGHLAKACPDNPKGLYPKGGGCRFCGSVEHLKSECKRKMEKVEKNDVKIC 370
>gi|146104187|ref|XP_001469754.1| putative universal minicircle sequence binding protein (UMSBP)
[Leishmania infantum JPCM5]
gi|398024252|ref|XP_003865287.1| universal minicircle sequence binding protein (UMSBP), putative
[Leishmania donovani]
gi|134074124|emb|CAM72866.1| putative universal minicircle sequence binding protein (UMSBP)
[Leishmania infantum JPCM5]
gi|322503524|emb|CBZ38610.1| universal minicircle sequence binding protein (UMSBP), putative
[Leishmania donovani]
Length = 271
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQC--------SKAQDCFICK 229
+C NCG+EGH A C A R CF CG H R+C + A CF C
Sbjct: 17 SCRNCGKEGHYARECPEADSKGDGRSTTCFRCGEEGHMTRECPNEARSGAAGAMTCFRCG 76
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+ GH ++DCP+ K G C CG GH
Sbjct: 77 EAGHMSRDCPNSAKPGAAKGFECYNCGQEGH 107
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 31/119 (26%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD---------- 224
G TC+ CGE GHM+ +C ++ K C+ CG H R C +Q
Sbjct: 68 GAMTCFRCGEAGHMSRDCPNSAKPGAAKGFECYNCGQEGHLSRDCPSSQGGSRGGYGQKR 127
Query: 225 --------------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRN 267
C+ C GH ++DCP+ + G+ A + C KCGD+GH C N
Sbjct: 128 GRSGAQGGYGGDRTCYKCGDAGHISRDCPNG-QGGYSGAGDRTCYKCGDAGHISRDCPN 185
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 32/109 (29%)
Query: 183 CYNCGEEGHMAVNC-------RSAVKRKK-------------PCFVCGSLEHGVRQCSKA 222
CYNCG+EGH++ +C R +K+ C+ CG H R C
Sbjct: 99 CYNCGQEGHLSRDCPSSQGGSRGGYGQKRGRSGAQGGYGGDRTCYKCGDAGHISRDCPNG 158
Query: 223 QD---------CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGH 260
Q C+ C GH ++DCP+ + G+ A + C KCG+SGH
Sbjct: 159 QGGYSGAGDRTCYKCGDAGHISRDCPNG-QGGYSGAGDRKCYKCGESGH 206
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 15/96 (15%)
Query: 179 GWQTCYNCGEEGHMAVNCRSA-----VKRKKPCFVCGSLEHGVRQCSKAQD--------- 224
G +TCY CG+ GH++ +C + + C+ CG H R C Q
Sbjct: 138 GDRTCYKCGDAGHISRDCPNGQGGYSGAGDRTCYKCGDAGHISRDCPNGQGGYSGAGDRK 197
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C+ C + GH +++CP +G + + C KCG GH
Sbjct: 198 CYKCGESGHMSRECPSAGSNGSGD-RTCYKCGKPGH 232
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 20/108 (18%)
Query: 179 GWQTCYNCGEEGHMAVNC-------RSAVKRKKPCFVCGSLEHGVRQCSKA-------QD 224
G +TCY CG+ GH++ +C A RK C+ CG H R+C A +
Sbjct: 166 GDRTCYKCGDAGHISRDCPNGQGGYSGAGDRK--CYKCGESGHMSRECPSAGSNGSGDRT 223
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNA----QVCLKCGDSGHDMFSCRNS 268
C+ C K GH +++CP+ S + + C KCG++GH C +S
Sbjct: 224 CYKCGKPGHISRECPEAGGSYGGSRGGGDRTCYKCGEAGHISRDCPSS 271
>gi|145518073|ref|XP_001444914.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124412347|emb|CAK77517.1| unnamed protein product [Paramecium tetraurelia]
Length = 243
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP--CFVCGSLEHGVRQCSKAQD-------CFICKKGGH 233
C C + GH A +CR V+ C+ CGS +H ++ C K + CF+CK+ GH
Sbjct: 129 CLVCKKVGHTAQHCRENVQPTTDVICYNCGSQKHTLKDCQKPKSGSLKFATCFVCKEAGH 188
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++DCP K + C C + H +C
Sbjct: 189 ISRDCPKNPKGLYAYGGGCYICSSTHHTQANC 220
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 11/73 (15%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSKAQD--------CFICKKG 231
CYNCG + H +C +S + CFVC H R C K C+IC
Sbjct: 154 CYNCGSQKHTLKDCQKPKSGSLKFATCFVCKEAGHISRDCPKNPKGLYAYGGGCYICSST 213
Query: 232 GHRAKDCPDKHKS 244
H +CP K+
Sbjct: 214 HHTQANCPQNPKN 226
>gi|429249200|gb|AFZ77644.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + + CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQHTNIM--MQKGIFKGPRRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|77416891|sp|P24740.3|POL_HV1U4 RecName: Full=Gag-Pol polyprotein; AltName: Full=Pr160Gag-Pol;
Contains: RecName: Full=Matrix protein p17; Short=MA;
Contains: RecName: Full=Capsid protein p24; Short=CA;
Contains: RecName: Full=Spacer peptide p2; Contains:
RecName: Full=Nucleocapsid protein p7; Short=NC;
Contains: RecName: Full=Transframe peptide; Short=TF;
Contains: RecName: Full=p6-pol; Short=p6*; Contains:
RecName: Full=Protease; AltName: Full=PR; AltName:
Full=Retropepsin; Contains: RecName: Full=Reverse
transcriptase/ribonuclease H; AltName:
Full=Exoribonuclease H; AltName: Full=p66 RT; Contains:
RecName: Full=p51 RT; Contains: RecName: Full=p15;
Contains: RecName: Full=Integrase; Short=IN
Length = 1428
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQQTSIMMQRGNFRGPRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 411 GKEGHQMKDCTERQANFL 428
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + + CF C K GH AK+C
Sbjct: 345 ACQGVGGPGHKARVLAEAMSQVQQTSIM--MQRGNFRGPRRIKCFNCGKEGHLAKNCRAP 402
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 RKKG------CWKCGKEGHQMKDC 420
>gi|299930377|gb|ADJ58396.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R L+GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHPNIMMQRGNLKGPRRII-------KCFNCGKEGHLARNCRAP--RKKGCWKC 415
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 416 GKEGHQMKDCTERQANFLGK 435
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 13/87 (14%)
Query: 182 TCYNCGEEGHMA---VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDC 238
C G H A S V+ G+L+ G R+ K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQVQHPNIMMQRGNLK-GPRRIIK---CFNCGKEGHLARNC 404
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 405 RAPRKKG------CWKCGKEGHQMKDC 425
>gi|299929713|gb|ADJ58064.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQANVMMQRGNFKGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|332079144|gb|AEE00152.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 448
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V + NI++ R RGPR C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMSQVTNAANIMMQRGNFRGPRKII-------KCFNCGKEGHLARNCRAP--RKKGCWK 415
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 416 CGKEGHQMKDCTERQANFLGK 436
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + R K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVTNAANIMMQRGNFRGPRKIIKCFNCGKEGHLARNCRAP 408
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 409 RKKG------CWKCGKEGHQMKDC 426
>gi|347596136|gb|AEP14044.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSNVQHANIMMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|336372146|gb|EGO00486.1| hypothetical protein SERLA73DRAFT_136388 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384888|gb|EGO26036.1| hypothetical protein SERLADRAFT_466996 [Serpula lacrymans var.
lacrymans S7.9]
Length = 330
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 16/99 (16%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP------CFVCGSLEHGVRQCSKAQD---------CFI 227
C+ C ++GH A +C +A + +K C+ CGS H + +C K +D CF+
Sbjct: 152 CFACRKKGHAARDCPTATEGRKNNKIVGICYRCGSSRHNLARCKKPEDPLNPLPFASCFV 211
Query: 228 CKKGGHRAKDCP-DKHKSGFQNAQVCLKCGDSGHDMFSC 265
C GH A CP +K + + + C CGD+ H +C
Sbjct: 212 CSGKGHLASSCPKNKERGIYPDGGCCKLCGDTTHLAKNC 250
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQN--AQVCLKCGDSGHDMFSCR 266
CF C+K GH A+DCP + N +C +CG S H++ C+
Sbjct: 152 CFACRKKGHAARDCPTATEGRKNNKIVGICYRCGSSRHNLARCK 195
>gi|86277567|gb|ABC88291.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 34/47 (72%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CGS EH ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGSEEHQMKDCTERQANFLGK 436
>gi|331029860|gb|AEC50058.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ + NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMSQAQQHTNIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 415 CGKEGHQMKDCTERQANFLGK 435
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G+ + K CF C K GH A++C K G C KCG GH M C
Sbjct: 378 MQKGIFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 425
>gi|19335964|emb|CAC38430.2| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 1445
Score = 55.8 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF----ICK 229
+P +G C+NCG+EGH+A NCR+ RKK C+ CG H ++ C + I
Sbjct: 386 NPSRKGPIKCFNCGKEGHLARNCRAP--RKKGCWKCGQEGHQMKDCKNGRQANFFREILA 443
Query: 230 KGGHRAK 236
GGH A+
Sbjct: 444 SGGHEAR 450
Score = 43.1 bits (100), Expect = 0.15, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
CF C K GH A++C K G C KCG GH M C+N
Sbjct: 395 CFNCGKEGHLARNCRAPRKKG------CWKCGQEGHQMKDCKN 431
>gi|145229969|ref|XP_001389293.1| zinc knuckle transcription factor (CnjB) [Aspergillus niger CBS
513.88]
gi|134055407|emb|CAK37116.1| unnamed protein product [Aspergillus niger]
Length = 481
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C NCG +GH A NC ++ CF CG H +C+K + C IC K GH A +C
Sbjct: 59 CRNCGSDGHFARNC-PEPRKDMACFNCGEDGHNKSECTKPRVFKGACRICNKEGHPAAEC 117
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
P+K VC C GH C+ + D
Sbjct: 118 PEK------GPDVCKNCKMEGHKTMDCKENRRFD 145
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAKD 237
C C E GH A +C A + C CGS +H + C K +D C C + GH ++D
Sbjct: 347 CKRCNEMGHFAKDCPQAPPPRT-CRNCGSEDHIAKDCDKPRDVSTVTCRNCDEVGHFSRD 405
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDD 273
CP K + C CG+ GH + C + + +D
Sbjct: 406 CPKKRD---YSRVKCNNCGEMGHTIKRCPTANAAED 438
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 10/83 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
C NC +GH A +C + C CG+ +H +C + +C C + GH AKD
Sbjct: 300 CVNCSADGHRARDCPEPRRNVFACRNCGAEDHKASECPNPRSAENVECKRCNEMGHFAKD 359
Query: 238 CPDKHKSGFQNAQVCLKCGDSGH 260
CP + C CG H
Sbjct: 360 CPQAPP-----PRTCRNCGSEDH 377
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 41/102 (40%), Gaps = 19/102 (18%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHR 234
P DR C NCG GH A C+ + GV+ C C GHR
Sbjct: 265 PYDRQVPKCSNCGVLGHTARGCKEEREE--------RERVGVK-------CVNCSADGHR 309
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKV 276
A+DCP+ ++ F C CG H C N S ++++
Sbjct: 310 ARDCPEPRRNVF----ACRNCGAEDHKASECPNPRSAENVEC 347
>gi|4126714|dbj|BAA36710.1| DEAD-Box Protein [Ciona intestinalis]
Length = 669
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ CGEEGHM+ C GS R ++++ CF C + GH +++CP
Sbjct: 53 CFKCGEEGHMSRECPQNT---------GSGFGDSRGGARSKGCFKCGEEGHMSRECPQNT 103
Query: 243 KSGFQNAQV------CLKCGDSGHDMFSCRNSYSLDDLKVCLYF 280
SGF +++ C KCG+ GH C + D YF
Sbjct: 104 GSGFGDSRGGARSKGCFKCGEEGHMSRECPQNTGSGDRHSNAYF 147
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQ------VCLKCGDSGH 260
R ++++ CF C + GH +++CP SGF +++ C KCG+ GH
Sbjct: 45 RGGARSKGCFKCGEEGHMSRECPQNTGSGFGDSRGGARSKGCFKCGEEGH 94
>gi|87131049|gb|ABD24129.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 360 EAMSQVHQTNIMMQRNNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 409
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 410 GKEGHQMKDCTERQANFLGK 429
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 385 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 419
>gi|426230074|ref|XP_004023537.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger CCHC domain-containing
protein 9 [Ovis aries]
Length = 271
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C +A++ ++ C+ CGS EH + +C D CF+C
Sbjct: 130 CFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
+ GH ++ CPD K + + C CG H C S + D +
Sbjct: 190 GEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHMKKDCPESQNSDRM 235
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C++ GH DCP ++ +C +CG + H++ C+
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCK 171
>gi|326416985|gb|ADZ73337.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQHANILMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|315056357|ref|XP_003177553.1| hypothetical protein MGYG_01625 [Arthroderma gypseum CBS 118893]
gi|311339399|gb|EFQ98601.1| hypothetical protein MGYG_01625 [Arthroderma gypseum CBS 118893]
Length = 472
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
TC NCG+ GH A C K CF CG H C + C IC+K GH A
Sbjct: 49 TCRNCGQAGHFARECPEPRKLSGACFNCGQEGHNKSDCPNPRIFTGTCRICEKEGHPAAQ 108
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKV 276
CPD+ +C C GH C + L+ V
Sbjct: 109 CPDRP------PDICKNCKAEGHKTMECTENRKLEQHNV 141
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 20/117 (17%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCR---SAVKR-KKPCFVCGSLEHGVRQCSKAQ----DCF 226
P DR C NCG+ GH+ +C+ S V+R + C C H R C +A+ C
Sbjct: 257 PLDRQIPKCSNCGQMGHIMKSCKEEHSVVERVEVKCVNCKQPGHRARDCKEARVDRFACR 316
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH---------DMFSCRNSYSLDDL 274
C KGGHR+ +C + + C +C + GH +CRN S D +
Sbjct: 317 NCGKGGHRSNECTEPRSA---EGVECKRCNEVGHFAKDCPQGGGSRACRNCGSEDHM 370
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
C NC + GH A +C+ A + C CG H +C++ + +C C + GH AKD
Sbjct: 292 CVNCKQPGHRARDCKEARVDRFACRNCGKGGHRSNECTEPRSAEGVECKRCNEVGHFAKD 351
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CP S + C CG H + C
Sbjct: 352 CPQGGGS-----RACRNCGSEDHMVKDC 374
Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAKD 237
C C E GH A +C + C CGS +H V+ C + ++ C C++ GH ++D
Sbjct: 339 CKRCNEVGHFAKDCPQGGGSRA-CRNCGSEDHMVKDCDQPRNMATVTCHNCEEMGHFSRD 397
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C K + C CG+ GH + C
Sbjct: 398 CTKKKD---WSKVKCSCCGEMGHTIRRC 422
>gi|167379639|ref|XP_001735220.1| zinc finger protein cchc domain containing protein [Entamoeba
dispar SAW760]
gi|165902889|gb|EDR28598.1| zinc finger protein cchc domain containing protein, putative
[Entamoeba dispar SAW760]
Length = 164
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 8/95 (8%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKAQD-------CFICKKGG 232
+TC+ C + GH NC K + C+ CGS +H +R C + + CF+C + G
Sbjct: 14 KTCFYCRQPGHCLKNCPKKAKGEDSICYNCGSHDHILRDCPEPRTGKLAFSTCFVCHQMG 73
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
H ++DCP+ K + C CGD H C N
Sbjct: 74 HISRDCPNNPKGIYPQGGGCRYCGDVNHFAKDCPN 108
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCS--------KAQDCFICKKG 231
CYNCG H+ +C R+ CFVC + H R C + C C
Sbjct: 40 CYNCGSHDHILRDCPEPRTGKLAFSTCFVCHQMGHISRDCPNNPKGIYPQGGGCRYCGDV 99
Query: 232 GHRAKDCPDKHK 243
H AKDCP+K K
Sbjct: 100 NHFAKDCPNKRK 111
>gi|33331455|gb|AAQ10901.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQPNIMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G H A V + + ++P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQVQQPNIM---MQRGNFRGPKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|395511351|ref|XP_003759923.1| PREDICTED: zinc finger CCHC domain-containing protein 9
[Sarcophilus harrisii]
Length = 262
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVKRK----KPCFVCGSLEHGVRQCSKAQD--------- 224
R Q CY+C + GH +C + ++ + C+ CGS EH + +C D
Sbjct: 116 RNSQVCYHCRKPGHGIADCPAVLESQDIGTGICYRCGSTEHEITKCKAKVDPAMGEFPFA 175
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
CFIC + GH ++ CPD K + C CG H C + + D++
Sbjct: 176 KCFICGEMGHLSRSCPDNPKGLYAEGGGCRLCGSVEHFKKDCPENQNSDNM 226
>gi|268560866|ref|XP_002646309.1| Hypothetical protein CBG12016 [Caenorhabditis briggsae]
Length = 785
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C+NCGEEGH + C + PC C + H C K + C C+K GH AKDC
Sbjct: 636 CHNCGEEGHFSRECPKPKQPNLPCRNCNEVGHFSTDCDKPKVPFGPCRNCQKEGHFAKDC 695
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSC 265
P++ + + C +C + GH C
Sbjct: 696 PEERVR-IEPTEPCRRCNEEGHWASEC 721
>gi|429249182|gb|AFZ77635.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHTNIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G+ + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQKGIFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|9886937|gb|AAG01663.1| gag protein [Human immunodeficiency virus 1]
Length = 470
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ S+ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 339 EAMSQVQQSNIMMQRXNFKGPRRSI-------KCFNCGKEGHLARNCRAP--RKKGCWKC 389
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 390 GKEGHQMKDCTERQANFLGK 409
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 365 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 399
>gi|38491606|gb|AAR22005.1| gag protein [Human immunodeficiency virus 1]
Length = 484
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGPR C+NCG+EGH+A NC++ RKK C+ C
Sbjct: 360 EAMSQVQQAGIMMQRSNFRGPRTIK--------CFNCGKEGHLARNCKAP--RKKGCWKC 409
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 410 GKEGHQMKDCTERQANFLGK 429
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ + + CF C K GH A++C
Sbjct: 344 ACQGVGGPGHKARVLAEAMSQVQQAGIM--MQRSNFRGPRTIKCFNCGKEGHLARNCKAP 401
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 402 RKKG------CWKCGKEGHQMKDC 419
>gi|358057974|dbj|GAA96219.1| hypothetical protein E5Q_02883 [Mixia osmundae IAM 14324]
Length = 215
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-----AQDCFICKK 230
P R + C+ CG++ H+A +C S VK CF C S +H + +CS+ + C+ C+
Sbjct: 5 PARRPRGCFRCGKDDHLAASCPSEVKL---CFNCASPDHSLAECSEERKPMSMTCYNCQG 61
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
GHRA DC + + + ++C CG GH +C
Sbjct: 62 QGHRAADCTEARVA--RPEKLCYTCGQGGHVASAC 94
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 18/74 (24%)
Query: 182 TCYNCGEEGHMAVNCRSA-----------VKRKKPCFVCGSLEHGVRQCSKAQD------ 224
TC+ CG++GH A +C +A R K C CG H +R C A D
Sbjct: 125 TCHRCGQDGHFARDCSAADPISPREPSARPPRTKTCHSCGGA-HLIRDCPTATDRPAAKT 183
Query: 225 CFICKKGGHRAKDC 238
C+ C GH +++C
Sbjct: 184 CYNCGLSGHLSRNC 197
>gi|407736156|gb|AFU29466.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQNTNIMMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|407736172|gb|AFU29480.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQNTNIMMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|407736125|gb|AFU29439.1| gag protein [Human immunodeficiency virus 1]
gi|407736140|gb|AFU29452.1| gag protein [Human immunodeficiency virus 1]
gi|407736148|gb|AFU29459.1| gag protein [Human immunodeficiency virus 1]
gi|407736180|gb|AFU29487.1| gag protein [Human immunodeficiency virus 1]
gi|407736188|gb|AFU29494.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQNTNIMMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|395754126|ref|XP_003779713.1| PREDICTED: zinc finger CCHC domain-containing protein 13-like
[Pongo abelii]
Length = 170
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 46/87 (52%), Gaps = 14/87 (16%)
Query: 183 CYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQC--SKAQDCFICKKGGHRAKDCP 239
CYNCG GH+A +C+ + R + C+ CG L H R C K Q C+ C K GH KDC
Sbjct: 67 CYNCGRSGHIAKDCKEPKRERHQHCYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDC- 125
Query: 240 DKHKSGFQNAQV-CLKCGDSGHDMFSC 265
AQV C +CG+ GH +C
Sbjct: 126 ---------AQVKCYRCGEIGHVAINC 143
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 7/62 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ--DCFICKKGGHRAKDC 238
Q CY+CG+ GH+ +C + VK C+ CG + H CSKA +C+ C K GH A++C
Sbjct: 110 QKCYSCGKLGHIQKDC-AQVK----CYRCGEIGHVAINCSKASQVNCYRCGKSGHLAREC 164
Query: 239 PD 240
P
Sbjct: 165 PS 166
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CY CG GH+A +C ++++ C+ CG L H + C++ + C+ C + GH
Sbjct: 82 EPKRERHQHCYTCGRLGHLARDCDR--QKEQKCYSCGKLGHIQKDCAQVK-CYRCGEIGH 138
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + +QV C +CG SGH
Sbjct: 139 VAINCS-------KASQVNCYRCGKSGH 159
>gi|195954494|gb|ACG58940.1| gag protein [Human immunodeficiency virus 1]
gi|238734212|gb|ACR55444.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V NI++ R RGPR C+NCG+EGH+A NC++ RKK C+
Sbjct: 363 EAMSQVAQQTNIMMQRGNFRGPRKIK--------CFNCGKEGHLARNCKAP--RKKGCWK 412
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 413 CGKEGHQMKDCTERQANFLGK 433
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 389 CFNCGKEGHLARNCKAPRKKG------CWKCGKEGHQMKDC 423
>gi|146104184|ref|XP_001469753.1| putative poly-zinc finger protein 2 [Leishmania infantum JPCM5]
gi|398024250|ref|XP_003865286.1| poly-zinc finger protein 2, putative [Leishmania donovani]
gi|134074123|emb|CAM72865.1| putative poly-zinc finger protein 2 [Leishmania infantum JPCM5]
gi|322503523|emb|CBZ38609.1| poly-zinc finger protein 2, putative [Leishmania donovani]
Length = 135
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CG GH + C SA PCF CG H ++C ++ CF C+K GHRA+D
Sbjct: 3 CYRCGGVGHQSRECTSAAD-SAPCFRCGKPGHVAKECVSTITAEEAPCFYCQKPGHRARD 61
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
CP+ +C C GH C N
Sbjct: 62 CPEAPPK--SETVMCYNCSQKGHIASECTN 89
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 27/104 (25%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK-PCFVCGSLEHGVRQCSKAQD----------------- 224
C+ CG+ GH+A C S + ++ PCF C H R C +A
Sbjct: 25 CFRCGKPGHVAKECVSTITAEEAPCFYCQKPGHRARDCPEAPPKSETVMCYNCSQKGHIA 84
Query: 225 --------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C++C + GH + CP K + + C KCG GH
Sbjct: 85 SECTNPAHCYLCNEDGHIGRSCPTAPKRSAAD-KTCRKCGKKGH 127
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 42/102 (41%), Gaps = 15/102 (14%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFD----PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKP 205
E V+T+ + G R D PP CYNC ++GH+A C +
Sbjct: 37 ECVSTITAEEAPCFYCQKPGHRARDCPEAPPKSETVMCYNCSQKGHIASECTNPAH---- 92
Query: 206 CFVCGSLEHGVRQCSKA-------QDCFICKKGGHRAKDCPD 240
C++C H R C A + C C K GH KDCPD
Sbjct: 93 CYLCNEDGHIGRSCPTAPKRSAADKTCRKCGKKGHLRKDCPD 134
>gi|407736164|gb|AFU29473.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQNTNIMMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|407736132|gb|AFU29445.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQNTNIMMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|63098362|gb|AAY32407.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S+NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SNNIMMQKSNFKGPRRII-------KCFNCGKEGHLAKNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|429249192|gb|AFZ77640.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHTNIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKAKVLAEAMSQVQHTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|407736117|gb|AFU29432.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQNTNIMMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|326417088|gb|ADZ73387.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E +T V+ ++ ++ R +GP+ C+NCG EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMTHVQQANVMMQRGNFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C + GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPKRIKCFNCGREGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|19335965|emb|CAC38421.2| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 1445
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 6/67 (8%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC--SKAQDCF--ICK 229
+P +G C+NCG+EGH+A NCR+ RKK C+ CG H ++ C K + F I
Sbjct: 386 NPGRKGPIKCFNCGKEGHLARNCRAP--RKKGCWKCGQEGHQMKDCRNGKQANFFREILA 443
Query: 230 KGGHRAK 236
GGH A+
Sbjct: 444 SGGHEAR 450
Score = 44.7 bits (104), Expect = 0.059, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
CF C K GH A++C K G C KCG GH M CRN
Sbjct: 395 CFNCGKEGHLARNCRAPRKKG------CWKCGQEGHQMKDCRN 431
>gi|429249232|gb|AFZ77660.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQTNIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQQTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|255739511|gb|ACU31693.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFRGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 420
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 421 CTERQANFLGK 431
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 421
>gi|393220397|gb|EJD05883.1| hypothetical protein FOMMEDRAFT_79565 [Fomitiporia mediterranea
MF3/22]
Length = 158
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 42/96 (43%), Gaps = 23/96 (23%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK-----------------RKKPCFVCGSLEHGVRQCSKAQ 223
Q CY C + GH+A NC AV R K CF CG L H R C K
Sbjct: 69 QECYRCSKAGHIARNCPEAVGGGSGGGGGGYGGYNDNMRGKNCFTCGGLGHLSRDCVKGA 128
Query: 224 DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
C+ C GH ++DCP + +VC +CG G
Sbjct: 129 KCYNCSGYGHISRDCPKPQQ------RVCYQCGSEG 158
>gi|319921905|gb|ADV78571.1| universal minicircle sequence-binding protein 1 [Leishmania
donovani]
Length = 115
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 13/87 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGH 233
++CYNCGE HM+ +C S ++ K C+ CGS +H R+C+ + C+ C GH
Sbjct: 26 RSCYNCGETSHMSRDCPSE-RKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGH 84
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGH 260
++DCP++ K + C CG + H
Sbjct: 85 LSRDCPNERK-----PKSCYNCGSTDH 106
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 182 TCYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKD 237
TCY CGE GHM+ +C R+A R C+ CG H R C K + C+ C H +++
Sbjct: 5 TCYKCGEAGHMSRSCPRAAATRS--CYNCGETSHMSRDCPSERKPKSCYNCGSTDHLSRE 62
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C ++ K+G + + C CG +GH C N
Sbjct: 63 CTNEAKAG-ADTRSCYNCGGTGHLSRDCPN 91
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS---KAQDCFIC 228
P +R ++CYNCG H++ C + K + C+ CG H R C K + C+ C
Sbjct: 42 PSERKPKSCYNCGSTDHLSRECTNEAKAGADTRSCYNCGGTGHLSRDCPNERKPKSCYNC 101
Query: 229 KKGGHRAKDCPDKH 242
H +++CPD+H
Sbjct: 102 GSTDHLSRECPDRH 115
>gi|296485065|tpg|DAA27180.1| TPA: zinc finger, CCHC domain containing 9 [Bos taurus]
gi|440898449|gb|ELR49947.1| Zinc finger CCHC domain-containing protein 9 [Bos grunniens mutus]
Length = 271
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C +A++ ++ C+ CGS EH + +C D CF+C
Sbjct: 130 CFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
+ GH ++ CPD K + + C CG H C S + D
Sbjct: 190 GEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHMKKDCPESQNSD 233
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C++ GH DCP ++ +C +CG + H++ C+
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCK 171
>gi|223994373|ref|XP_002286870.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220978185|gb|EED96511.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 132
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 21/107 (19%)
Query: 180 WQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--------------- 224
+ CY C ++GH A + K+ C+ CGS EH ++QC+K +
Sbjct: 26 YLICYRCRKQGHSAESSGQKKKQGLICYKCGSTEHRIQQCAKIKSFIKPGQKKIDFGKIG 85
Query: 225 ------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C++C K GH + CPD F C +CG+ GH C
Sbjct: 86 VLPFASCYVCNKSGHLSSYCPDSKNGVFPKGGTCNECGEPGHFAADC 132
>gi|373842380|gb|AEY77179.1| gag protein [Human immunodeficiency virus]
Length = 495
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHTNIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G+ + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQKGIFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|169848221|ref|XP_001830818.1| zinc knuckle family protein [Coprinopsis cinerea okayama7#130]
gi|116507987|gb|EAU90882.1| zinc knuckle family protein [Coprinopsis cinerea okayama7#130]
Length = 340
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 29/113 (25%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-----------RKKP--------CFVCGSLEHGVRQCSKA 222
TC+ C E+GH A +C A + KKP C+ CGS +H + +C K
Sbjct: 145 TCFVCREKGHAARDCPRASELAAAAGEPPAEGKKPAASSVVGICYRCGSTKHNLSKCKKP 204
Query: 223 QD---------CFICKKGGHRAKDCP-DKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ CF+C GH A CP +K K + N C CGD+ H C
Sbjct: 205 PNPENPLPYASCFVCSGKGHLASACPQNKTKGVYPNGGCCKICGDTSHLAKDC 257
>gi|429249208|gb|AFZ77648.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHTNIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|554837|gb|AAA44313.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ S+ ++ R +G R F C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 367 EAMSQVQQSNIMMQRGNFKGQRKFV-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 417
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q FI K
Sbjct: 418 GKEGHQMKDCTERQANFIGK 437
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
Query: 182 TCYNCGEEGHMA---VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDC 238
C G GH A S V++ G+ + G R+ K CF C K GH AK+C
Sbjct: 351 ACQGVGGPGHKARVLAEAMSQVQQSNIMMQRGNFK-GQRKFVK---CFNCGKEGHIAKNC 406
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RAPRKKG------CWKCGKEGHQMKDC 427
>gi|328834365|gb|AEB52782.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ VE ++ ++++K RGP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMSQVENANIMMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 415 CGKEGHQMKDCTERQANFLGK 435
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 425
>gi|327297590|ref|XP_003233489.1| zinc knuckle domain-containing protein [Trichophyton rubrum CBS
118892]
gi|326464795|gb|EGD90248.1| zinc knuckle domain-containing protein [Trichophyton rubrum CBS
118892]
Length = 190
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 25/108 (23%)
Query: 181 QTCYNCGEEGHMAVNC---------------------RSAVKRKKPCFVCGSLEHGVRQC 219
Q CY CG+ GH+A NC R + C+ CG H R C
Sbjct: 87 QECYKCGQVGHIARNCSQQGGSGYGGGYGNSGSGSYSGGYGGRSQTCYSCGGYGHMARGC 146
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
++ Q C+ C + GH ++DCP + K +VC KC +GH +C N
Sbjct: 147 TQGQKCYNCGEVGHVSRDCPTEAK----GERVCYKCKQAGHVQAACPN 190
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 18/82 (21%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C K K C+ CG H R+C +
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSRECTQPPKEKS-CYRCGMTGHISRECPSSGSGDNNYSGGY 80
Query: 223 ------QDCFICKKGGHRAKDC 238
Q+C+ C + GH A++C
Sbjct: 81 SGGSGGQECYKCGQVGHIARNC 102
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 18/97 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKDC 238
C+NCGE H A +C K+ P C+ CG H R+C+ K + C+ C GH +++C
Sbjct: 10 CFNCGESSHQARDC---PKKGTPTCYNCGGQGHVSRECTQPPKEKSCYRCGMTGHISREC 66
Query: 239 PDKHKSGFQN----------AQVCLKCGDSGHDMFSC 265
P SG N Q C KCG GH +C
Sbjct: 67 PSS-GSGDNNYSGGYSGGSGGQECYKCGQVGHIARNC 102
>gi|259127927|gb|ACV94736.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHTNIMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHTNIM--MQRGNFRGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|225555534|gb|EEH03826.1| zinc knuckle domain-containing protein [Ajellomyces capsulatus
G186AR]
Length = 184
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 25/108 (23%)
Query: 181 QTCYNCGEEGHMAVNC---------------------RSAVKRKKPCFVCGSLEHGVRQC 219
Q CY CG+ GH+A NC R++ C+ CG H R C
Sbjct: 81 QECYKCGQVGHIARNCSQSGGYGSGGYGGATGGGYSGGYGGGRQQTCYSCGGYGHMARDC 140
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
++ Q C+ C + GH ++DCP + K +VC KC GH +C N
Sbjct: 141 TQGQKCYNCGEVGHVSRDCPTEAK----GERVCYKCKQPGHVQATCPN 184
>gi|331238075|ref|XP_003331693.1| hypothetical protein PGTG_12858 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309310683|gb|EFP87274.1| hypothetical protein PGTG_12858 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 169
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-DCFICKKGGHR 234
P G +CYNCG EGH++ +C + K C+ CG H R CS+ + +CF C + GH
Sbjct: 19 PKSGTPSCYNCGGEGHISKDCSNPTAPKS-CYTCGDSGHISRDCSQQKTNCFKCGEEGHY 77
Query: 235 AKDCPDKHKSGFQNAQ 250
++DCP G Q Q
Sbjct: 78 SRDCPQAGGGGDQGYQ 93
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSK---AQDCFICKKGGHRAKDC 238
CYNCG GH+A C K P C+ CG H + CS + C+ C GH ++DC
Sbjct: 5 CYNCGGGGHLAAAC---PKSGTPSCYNCGGEGHISKDCSNPTAPKSCYTCGDSGHISRDC 61
Query: 239 PDKHKSGFQNAQVCLKCGDSGH 260
Q C KCG+ GH
Sbjct: 62 -------SQQKTNCFKCGEEGH 76
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 26/98 (26%)
Query: 183 CYNCGEEGHMAVNCRSA--------------------VKRKKPCFVCGSLEHGVRQCSKA 222
C+ CGEEGH + +C A + C+ CG + H R C
Sbjct: 68 CFKCGEEGHYSRDCPQAGGGGDQGYQSYSGGRGRGGGGGGSRNCYTCGGVGHLSRDCVGD 127
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
Q CF C + GH ++DC A+ C CG SGH
Sbjct: 128 QKCFNCGEVGHVSRDCSRP------QAKNCYACGQSGH 159
>gi|25166781|gb|AAN73574.1|AF484493_1 gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 43/77 (55%), Gaps = 10/77 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVHQTNIMMQKGNFRGPKRI--------KCFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCF 226
G H ++ CS+ Q F
Sbjct: 415 GKEGHQLKDCSERQANF 431
Score = 39.3 bits (90), Expect = 2.2, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + ++ G + K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVHQTNIM--MQKGNFRGPKRIKCFNCGKEGHLARNCRAPR 407
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH + C
Sbjct: 408 KKG------CWKCGKEGHQLKDC 424
>gi|213138379|gb|ACJ44848.1| gag protein [Human immunodeficiency virus 1]
Length = 261
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 12/113 (10%)
Query: 120 KKEADKIEIEDQSVIVRKEEQKVET---ADNGDEGVTTVEISDNIVLRKLLRGPRYFDPP 176
K+ DKIE E + ++ ++ T + N E ++ ++ ++ R +GP+
Sbjct: 98 KEALDKIEEEQNKSQQKTKQAEMATGKASQNYAEAMSQANQANMMMQRSNFKGPKRII-- 155
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 156 -----KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 201
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 157 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 191
>gi|194220088|ref|XP_001504692.2| PREDICTED: zinc finger CCHC domain-containing protein 9-like [Equus
caballus]
Length = 271
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRKPGHGVADCPAALENHDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
C + GH ++ CPD K + + C CG H C S + D
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGCCRLCGSVAHFQKDCPESQNSD 233
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGVADCPAALENHDMGTGICYRCGSTEHEITKCK 171
>gi|155371841|ref|NP_001094525.1| zinc finger CCHC domain-containing protein 9 [Bos taurus]
gi|148877390|gb|AAI46121.1| ZCCHC9 protein [Bos taurus]
Length = 271
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C +A++ ++ C+ CGS EH + +C D CF+C
Sbjct: 130 CFHCRQTGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
+ GH ++ CPD K + + C CG H C S + D
Sbjct: 190 GEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHMKKDCPESQNSD 233
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C++ GH DCP ++ +C +CG + H++ C+
Sbjct: 120 RQAAKKNAMVCFHCRQTGHGIADCPAALENQEMGTGICYRCGSTEHEITKCK 171
>gi|429249184|gb|AFZ77636.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQHTNIMMQKGIFKGPKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G+ + K CF C K GH AK+C K G C KCG GH M C
Sbjct: 377 MQKGIFKGPKRIKCFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|197690502|emb|CAP69991.1| gag polyprotein [Human immunodeficiency virus 1]
Length = 498
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQPANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + +P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQVQPANIM--MQRGNFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|326417094|gb|ADZ73389.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ ++ R +GP+ F C+NCG EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHAQHANVMMQRGNFKGPKRFK--------CFNCGREGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + V ++ G + K CF C + GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSHAQHANVM--MQRGNFKGPKRFKCFNCGREGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|17532917|ref|NP_494168.1| Protein F07E5.5 [Caenorhabditis elegans]
gi|351065298|emb|CCD61275.1| Protein F07E5.5 [Caenorhabditis elegans]
Length = 384
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 9/93 (9%)
Query: 182 TCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKA-------QDCFICKKGG 232
C++C E GH +C R++ CF CGS+EH + +C K CF+CK+ G
Sbjct: 230 ACFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVG 289
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
H ++DC + + C CG + H C
Sbjct: 290 HISRDCHQNVNGVYPDGGCCNVCGANTHLRRDC 322
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
CF C++ GHR DCP ++ S VC KCG H + C+
Sbjct: 231 CFHCREPGHRLADCPKRNSSSSDG--VCFKCGSMEHSIHECK 270
>gi|320166376|gb|EFW43275.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 1075
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 171 RYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKK 230
RYF D G C+NC + GH++ +C + +R PC++CG H +C Q C+ C
Sbjct: 351 RYFVGFDAGRIRCHNCDQMGHISRDCPNK-RRVSPCYLCGEPGHTRFKCPN-QTCYACFG 408
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY 269
GH +DC + + +C +C GH +C + +
Sbjct: 409 AGHMMRDC---RRRAAKPHILCRRCKMRGHFEANCTDVW 444
>gi|373842358|gb|AEY77168.1| gag protein [Human immunodeficiency virus]
Length = 498
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSXVQHTNIMMQKGIFKGPKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCNERQANFLGK 434
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + ++ G+ + K CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSXVQHTNIM--MQKGIFKGPKRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|429249286|gb|AFZ77687.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQHTNIMMQKGIFKGPKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G+ + K CF C K GH AK+C K G C KCG GH M C
Sbjct: 377 MQKGIFKGPKRIKCFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|88853350|emb|CAJ01233.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 11/73 (15%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
+ NI+++K RGPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 370 NPNIMMQKGNFRGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|227057850|gb|ACP18904.1| gag protein [Human immunodeficiency virus 1]
Length = 505
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 11/73 (15%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SGNILMQRSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGQEGHQM 418
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 419 KDCTERQANFLGK 431
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLARNCRAPRKKG------CWKCGQEGHQMKDC 421
>gi|201067640|gb|ACH92926.1| vasa protein [Parhyale hawaiensis]
Length = 707
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 183 CYNCGEEGHMAVNCRS--AVKRKKPCFVCGSLEHGVRQCSK------------AQDCFIC 228
C CGEEGH A C S + CF CG H R+C + + CF C
Sbjct: 56 CRKCGEEGHRAFECTSGGGGGGNRACFKCGEEGHMSRECPQGGGQSFGGGGGGNRGCFKC 115
Query: 229 KKGGHRAKDCPDK--HKSGFQNAQVCLKCGDSGHDMFSCRNS 268
+ GH ++DCP+ G + C KCG+ GH C +S
Sbjct: 116 GEEGHMSRDCPNSVNGGGGASGGKGCFKCGEEGHMSRDCPSS 157
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 13/98 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVK------RKKPCFVCGSLEHGVRQCSKAQD-----CFICKKG 231
C+ CGEEGHM+ +C ++V K CF CG H R C + + CF C +
Sbjct: 112 CFKCGEEGHMSRDCPNSVNGGGGASGGKGCFKCGEEGHMSRDCPSSGNGGGKGCFKCGED 171
Query: 232 GHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCRN 267
GH A+DCP G + C CG+ GH+ C N
Sbjct: 172 GHMARDCPQGGDGGGGGGGNRGCFNCGEQGHNKADCPN 209
>gi|124389764|gb|ABN11064.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Query: 161 IVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS 220
++ R +GPR F C+NCG+EGH+A NCR+ RKK C+ CG H +++C+
Sbjct: 378 MMQRGNFKGPRKFI-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKECT 428
Query: 221 KAQDCFICK 229
+ Q F+ K
Sbjct: 429 ERQANFLGK 437
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 393 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKEC 427
>gi|2570321|gb|AAC97581.1| Gag-Pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1435
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF 226
F P RG + C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F
Sbjct: 384 FKGPRRGIK-CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQAKF 434
Score = 39.7 bits (91), Expect = 1.8, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 393 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 427
>gi|380022738|ref|XP_003695195.1| PREDICTED: uncharacterized protein LOC100868132 [Apis florea]
Length = 420
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---CFVCGSLEHGVRQCS-------KAQDCFICKKGG 232
C++C + GH +C + C+ CGS EH +C + CFIC++ G
Sbjct: 283 CFHCRKAGHNLSDCPELGSEQAGTGICYKCGSTEHTHFECKVTKPTEYRYATCFICREQG 342
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
H AK CPD K + C CGD H
Sbjct: 343 HIAKQCPDNPKGIYPQGGACKICGDVTH 370
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCR 266
CF C+K GH DCP+ G + A +C KCG + H F C+
Sbjct: 283 CFHCRKAGHNLSDCPE---LGSEQAGTGICYKCGSTEHTHFECK 323
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
Query: 179 GWQTCYNCGEEGHMAVNCR---SAVKRKKPCFVCGSLEHGVRQCS--------KAQDCFI 227
G CY CG H C+ R CF+C H +QC + C I
Sbjct: 305 GTGICYKCGSTEHTHFECKVTKPTEYRYATCFICREQGHIAKQCPDNPKGIYPQGGACKI 364
Query: 228 CKKGGHRAKDCPD 240
C H KDCPD
Sbjct: 365 CGDVTHLKKDCPD 377
>gi|119361806|gb|ABL66834.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSNVQHTNIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 375 MQRGNFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|259127946|gb|ACV94744.1| gag protein, partial [Human immunodeficiency virus 1]
gi|259127965|gb|ACV94753.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 495
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQPNIMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + ++P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQQPNIM---MQRGNFRGPKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|112351428|gb|ABI15222.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|345564451|gb|EGX47414.1| hypothetical protein AOL_s00083g507 [Arthrobotrys oligospora ATCC
24927]
Length = 196
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 18/95 (18%)
Query: 183 CYNCGEEGHMAVNCRS------------AVKRKKPCFVCGSLEHGVRQCSKAQDCFICKK 230
CY CG+ GH+A NC+S A R + C+ CG H R C++ Q C+ C +
Sbjct: 101 CYKCGKVGHIARNCQSGDNGGFGGGNRYASGRGQTCYSCGGFGHMSRDCTQGQKCYNCGQ 160
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
GH ++DC + +VC KC GH M +C
Sbjct: 161 IGHLSRDCTS------EQDRVCYKCKKPGHIMSNC 189
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 31/115 (26%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK------------ 221
D P RG CYNCG++GH++ C+S K +K C+ CG H R+C+
Sbjct: 33 DCPKRGNPVCYNCGQDGHLSRECQSPPK-EKSCYRCGQTGHISRECTNESSGSSYSGGNS 91
Query: 222 ------AQDCFICKKGGHRAKDCPD----------KHKSGFQNAQVCLKCGDSGH 260
+C+ C K GH A++C ++ SG Q C CG GH
Sbjct: 92 GGAAGSGAECYKCGKVGHIARNCQSGDNGGFGGGNRYASG--RGQTCYSCGGFGH 144
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDC 238
QTCY+CG GHM+ +C K C+ CG + H R C+ QD C+ CKK GH +C
Sbjct: 134 QTCYSCGGFGHMSRDCTQGQK----CYNCGQIGHLSRDCTSEQDRVCYKCKKPGHIMSNC 189
Query: 239 PD 240
P+
Sbjct: 190 PE 191
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 17/101 (16%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQC---SKAQDCFICKKGGHRAK 236
++CYNCG GH A +C KR P C+ CG H R+C K + C+ C + GH ++
Sbjct: 19 RSCYNCGGSGHQAKDC---PKRGNPVCYNCGQDGHLSRECQSPPKEKSCYRCGQTGHISR 75
Query: 237 DCPDKHKSGFQNAQV----------CLKCGDSGHDMFSCRN 267
+C ++ + C KCG GH +C++
Sbjct: 76 ECTNESSGSSYSGGNSGGAAGSGAECYKCGKVGHIARNCQS 116
>gi|281331900|emb|CAY83110.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 1428
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E +++++ ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 360 EAMSSLQNANIMMQRGNXRGPKRI--------KCFNCGKEGHLARNCRAP--RKKGCWKC 409
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 410 GKEGHQMKDCNERQANFL 427
Score = 40.8 bits (94), Expect = 0.83, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 372 MQRGNXRGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 419
>gi|407741470|gb|AFU33891.1| gag protein [Human immunodeficiency virus 1]
Length = 1432
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F + + K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFFRENLAFQGKAREFSS 447
Query: 243 KSGFQNAQVCLKCGDSGHD 261
+ N+ K GD G D
Sbjct: 448 EQTRANSPTSRKLGDGGRD 466
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGQKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|315044853|ref|XP_003171802.1| hypothetical protein MGYG_06345 [Arthroderma gypseum CBS 118893]
gi|311344145|gb|EFR03348.1| hypothetical protein MGYG_06345 [Arthroderma gypseum CBS 118893]
Length = 192
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 26/109 (23%)
Query: 181 QTCYNCGEEGHMAVNC----------------------RSAVKRKKPCFVCGSLEHGVRQ 218
Q CY CG+ GH+A NC S R + C+ CG H R
Sbjct: 88 QECYKCGQVGHIARNCSQQGGSGYGGGYGNSGSGSYGGGSYGGRSQTCYSCGGYGHMARD 147
Query: 219 CSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C++ Q C+ C + GH ++DCP + K +VC KC +GH +C N
Sbjct: 148 CTQGQKCYNCGEVGHVSRDCPTEAK----GERVCYKCKQAGHVQAACPN 192
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 19/83 (22%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C K K C+ CG H R+C +
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSRECTQPPKEKS-CYRCGMTGHISRECPSSGSGDNNYSGGG 80
Query: 223 -------QDCFICKKGGHRAKDC 238
Q+C+ C + GH A++C
Sbjct: 81 YSGGSGGQECYKCGQVGHIARNC 103
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 19/98 (19%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCS---KAQDCFICKKGGHRAKDC 238
C+NCGE H A +C K+ P C+ CG H R+C+ K + C+ C GH +++C
Sbjct: 10 CFNCGESSHQARDC---PKKGTPTCYNCGGQGHVSRECTQPPKEKSCYRCGMTGHISREC 66
Query: 239 PDKHKSGFQN-----------AQVCLKCGDSGHDMFSC 265
P SG N Q C KCG GH +C
Sbjct: 67 PSS-GSGDNNYSGGGYSGGSGGQECYKCGQVGHIARNC 103
>gi|307182143|gb|EFN69486.1| Zinc finger CCHC domain-containing protein 9 [Camponotus
floridanus]
Length = 422
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKK---PCFVCGSLEHGVRQCS-------KAQDCFICKK 230
Q C+NC + GH +C + + CF CGS EH +C + CFIC++
Sbjct: 282 QVCFNCRKSGHNLSDCPELGRDEACTGICFKCGSTEHTHFECKVNKNSTYRYAKCFICRE 341
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH A +CPD K + + C CG H
Sbjct: 342 QGHIAVECPDNPKGIYPHGGCCKICGAVTH 371
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNA--QVCLKCGDSGHDMFSCR 266
K Q CF C+K GH DCP+ G A +C KCG + H F C+
Sbjct: 280 KKQVCFNCRKSGHNLSDCPE---LGRDEACTGICFKCGSTEHTHFECK 324
>gi|225713264|gb|ACO12478.1| Zinc finger CCHC domain-containing protein 9 [Lepeophtheirus
salmonis]
Length = 394
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP--------CFVCGSLEHGVRQC-SKAQD--------C 225
CY C + GH +C A KK CF CGS+EH + C SK + C
Sbjct: 247 CYLCRKPGHFLSDCPEAKDGKKATKVGAVGSCFKCGSMEHTSKDCESKLKGEAAYRFAVC 306
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
FIC + GH AK CP K + C CG H CR
Sbjct: 307 FICSETGHLAKACPSNPKGLYPKGGGCRFCGSVEHLKSECR 347
>gi|320167039|gb|EFW43938.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 357
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 19/142 (13%)
Query: 130 DQSVIVRKEEQKVETADNGDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEE 189
D + ++ E A + + ++ R+L RG Q C+NC ++
Sbjct: 162 DLAFPAEAARERSEPAQDSAQPKRLTRHEKDVNARRLRRG--------LSKQICFNCRKK 213
Query: 190 GHMAVNCRSAVKRKKP---CFVCGSLEHGVRQCSKAQD--------CFICKKGGHRAKDC 238
GH C++ C+ CGS EH + C CF+C+K GH +K C
Sbjct: 214 GHSVSECKAGKTVSDATGLCYACGSTEHTTKSCRVPNPSGAMPFAMCFVCRKTGHLSKFC 273
Query: 239 PDKHKSGFQNAQVCLKCGDSGH 260
PD + + + C C H
Sbjct: 274 PDNPRGMYPDGGSCTHCTSVRH 295
>gi|112351468|gb|ABI15258.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|451312306|gb|AGF34615.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSNVQHTNIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|322695117|gb|EFY86931.1| hypothetical protein MAC_07048 [Metarhizium acridum CQMa 102]
Length = 156
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Query: 183 CYNCGEEGHMAVNCR--------------SAVKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
CY CGE GH+A NC K C+ CG H R+C C+ C
Sbjct: 61 CYKCGEIGHIARNCSKAGGSYGGSFGGGYGGGGAGKTCYSCGGYGHMSRECVNGMKCYNC 120
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ GH ++DCP + G ++C KC +GH +C N
Sbjct: 121 GESGHYSRDCPKESSGG---EKICYKCQQAGHVQSACPN 156
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 184 YNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS----------KAQDCFICKKGGH 233
YNCG EGHM+ +C +K K C+ CG H R+C ++ +C+ C + GH
Sbjct: 10 YNCGGEGHMSRDCSEPMKENKSCYKCGQPGHISRECPLGGAGGASGAQSTECYKCGEIGH 69
Query: 234 RAKDC 238
A++C
Sbjct: 70 IARNC 74
>gi|409684237|gb|AFV34162.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|355729967|gb|AES10044.1| zinc finger, CCHC domain containing 9 [Mustela putorius furo]
Length = 270
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
C + GH ++ CPD K + + C CG H C S + D +
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGCCRLCGSVDHFKKDCPESQNSDRM 235
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCK 171
>gi|410948894|ref|XP_003981162.1| PREDICTED: zinc finger CCHC domain-containing protein 9 [Felis
catus]
Length = 271
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C +A++ + C+ CGS EH + +C D CF+C
Sbjct: 130 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
+ GH ++ CPD K + + C CG H C S + D +
Sbjct: 190 GEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDCPESQNSDRM 235
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCK 171
>gi|371559454|gb|AEX36638.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|334884420|gb|AEH21321.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 502
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQANVMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + V ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARILAEAMSQVQQANVM--MQRGNFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|148469906|gb|ABQ65894.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNASIMMQRSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 413 GKEGHQMKDCTERQANFLGR 432
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ + K CF C K GH A++C
Sbjct: 347 ACQGVGGPGHKARVLAEAMSQVQNASIM--MQRSNFRGPKRIKCFNCGKEGHLARNCRAP 404
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 405 RKKG------CWKCGKEGHQMKDC 422
>gi|254667000|gb|ACT76428.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|254667059|gb|ACT76462.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|118426876|gb|ABK91189.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + LRGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNLRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|429862592|gb|ELA37234.1| zinc knuckle transcription factor [Colletotrichum gloeosporioides
Nara gc5]
Length = 460
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAK 236
TCYNCGEEGH +C + K C CG H V +C++ + +C C + GH +
Sbjct: 285 TCYNCGEEGHRVRDCPTPRIDKFACKNCGQSRHKVSECTEPRSAEGVECNKCNEMGHFGR 344
Query: 237 DCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSL 271
DCP G + C CG GH C L
Sbjct: 345 DCPTAGGGG----RSCHNCGQEGHISKECTEPRKL 375
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 9/98 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR-KKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDC 238
C+NCG++GH +C K C CG H R C A C C + GH KDC
Sbjct: 44 ACFNCGQDGHNKADCPEPAKPFDGECKGCGQQGHMRRDCPDAPPMACRSCGEEGHIRKDC 103
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKV 276
P+K +VC C + GH + +C N +D K+
Sbjct: 104 PNK------PPEVCRNCHEEGHLVVNCENPRKIDLSKI 135
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ--DCFICKKGGHRAKDCPD 240
C C E GH +C +A + C CG H ++C++ + C C + GH ++DC D
Sbjct: 333 CNKCNEMGHFGRDCPTAGGGGRSCHNCGQEGHISKECTEPRKLKCRNCDEEGHHSRDC-D 391
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
K + + C+ CG+ GH + C N + D
Sbjct: 392 KPQDVTR--IKCMNCGEMGHKKYKCPNPPAED 421
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGH 233
G ++C+NCG+EGH++ C K K C C H R C K QD C C + GH
Sbjct: 352 GGRSCHNCGQEGHISKECTEPRKLK--CRNCDEEGHHSRDCDKPQDVTRIKCMNCGEMGH 409
Query: 234 RAKDCPD 240
+ CP+
Sbjct: 410 KKYKCPN 416
>gi|78172851|gb|ABB29382.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 367 NIMMQKSNFRGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 416
Query: 219 CSKAQDCFICK 229
C++ Q F+ +
Sbjct: 417 CTERQANFLGR 427
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 383 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 417
>gi|270015492|gb|EFA11940.1| hypothetical protein TcasGA2_TC001898 [Tribolium castaneum]
Length = 710
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
CY C E GHMA C+ V R K C CG H V+ C K C +C GHRAK
Sbjct: 638 CYRCWEPGHMAARCQ-GVDRSKLCHRCGEEGHSVKTCEKEMFCPVCGVRGHRAK 690
>gi|113706814|gb|ABI36504.1| gag protein [Human immunodeficiency virus 1]
Length = 507
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG EH ++ CS+ Q F+ K
Sbjct: 397 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEEHQMKDCSERQANFLGK 441
>gi|22596554|gb|AAN03310.1|AF457088_1 gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ +V R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQKTNIMVQRGNFRGQRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 411 GKEGHQMKDCTERQANFLGK 430
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 386 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 420
>gi|213137875|gb|ACJ44614.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R RGPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SANIMMQRNNFRGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHHM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHHMKDC 422
>gi|429249308|gb|AFZ77698.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQTNIMMQKGIFKGPKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G+ + K CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQQTNIM--MQKGIFKGPKRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|259127950|gb|ACV94746.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHPNIMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + + P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHPNIM---MQRGNFRGPKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|429249288|gb|AFZ77688.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + + +GP+ C+NCG EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHPNILMQKGIFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + + P + ++ G+ + K CF C + GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHPNIL---MQKGIFKGPKRIKCFNCGREGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|371559504|gb|AEX36683.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQNANIM--MQKSNFRGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|338224552|gb|AEI88159.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQHTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|331029870|gb|AEC50063.1| gag protein [Human immunodeficiency virus 1]
gi|331029874|gb|AEC50065.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQTQHANIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|270015490|gb|EFA11938.1| hypothetical protein TcasGA2_TC001896 [Tribolium castaneum]
Length = 723
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
CY C E GHMA C+ V R K C CG H V+ C K C +C GHRAK
Sbjct: 651 CYRCWEPGHMAARCQ-GVDRSKLCHRCGEEGHSVKTCEKEMFCPVCGVRGHRAK 703
>gi|148666816|gb|EDK99232.1| cellular nucleic acid binding protein, isoform CRA_e [Mus musculus]
Length = 142
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 14/126 (11%)
Query: 143 ETADNGDEGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVK- 201
E A G + ++ + L+ PR R TCYNCG GH+A +C+ +
Sbjct: 1 EAAAEGSSLFPRLSLTSATAVVSLVILPRIVIC--RRMVTCYNCGRGGHIAKDCKEPKRE 58
Query: 202 RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
R++ C+ CG H R C A Q C+ C + GH KDC C +CG++G
Sbjct: 59 REQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTKVK---------CYRCGETG 109
Query: 260 HDMFSC 265
H +C
Sbjct: 110 HVAINC 115
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 54 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 110
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
A +C + ++V C +CG+SGH
Sbjct: 111 VAINCS-------KTSEVNCYRCGESGH 131
>gi|409684227|gb|AFV34153.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKG 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKGC 424
>gi|334883357|dbj|BAK38642.1| unnamed protein product [Tribolium castaneum]
Length = 710
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
CY C E GHMA C+ V R K C CG H V+ C K C +C GHRAK
Sbjct: 638 CYRCWEPGHMAARCQ-GVDRSKLCHRCGEEGHSVKTCEKEMFCPVCGVRGHRAK 690
>gi|331029872|gb|AEC50064.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQTQHANIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|282598041|gb|ADA83285.1| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQHTNIMMQRSNFRGQRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ CS+ Q F+ K
Sbjct: 413 GKEGHQMKDCSERQANFLGK 432
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|74052533|gb|AAZ95218.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|409684266|gb|AFV34188.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQHANIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|429249188|gb|AFZ77638.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSHAQQTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|57084761|ref|XP_536305.1| PREDICTED: zinc finger CCHC domain-containing protein 9 isoform 2
[Canis lupus familiaris]
Length = 271
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C +A++ + C+ CGS EH + +C D CF+C
Sbjct: 130 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 189
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
+ GH ++ CPD K + + C CG H C S + D +
Sbjct: 190 GEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDCPESQNSDRM 235
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCK 171
>gi|390347808|ref|XP_789049.2| PREDICTED: uncharacterized protein LOC584076 [Strongylocentrotus
purpuratus]
Length = 278
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 183 CYNCGEEGHMAVNCRSAV----KRKKPCFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C + + C+ CGS EH V +C+ D CFIC
Sbjct: 97 CFHCRQPGHGVADCPQMLGDVEQGTGICYRCGSTEHDVSKCNAKVDKKLGDFPYAKCFIC 156
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSY 269
+ GH ++ CPD + + + C +CG H ++C +
Sbjct: 157 GQTGHLSRMCPDNPRGLYPSGGGCKECGSMEHKWWNCPRLF 197
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 217 RQCSKAQD--CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
RQ KA + CF C++ GH DCP Q +C +CG + HD+ C
Sbjct: 87 RQKKKADNMMCFHCRQPGHGVADCPQMLGDVEQGTGICYRCGSTEHDVSKC 137
>gi|270011877|gb|EFA08325.1| hypothetical protein TcasGA2_TC005967 [Tribolium castaneum]
Length = 486
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP------CFVCGSLEHGVRQCS-------KAQDCFI 227
+ C+NC + GH C K CF CGS EH +C K CFI
Sbjct: 336 KVCFNCRKSGHNLSECPELGKEIAESSGTGICFKCGSTEHTHFECKVVRGQEFKFAQCFI 395
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C + GH A+ CPD + + C CGD H
Sbjct: 396 CHEQGHIARQCPDNARGLYPKGGACKVCGDVTH 428
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 225 CFICKKGGHRAKDCPD--KHKSGFQNAQVCLKCGDSGHDMFSCR 266
CF C+K GH +CP+ K + +C KCG + H F C+
Sbjct: 338 CFNCRKSGHNLSECPELGKEIAESSGTGICFKCGSTEHTHFECK 381
>gi|225056156|gb|ACN80883.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S ++++K RGP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 364 EAMSQVTNSATVMMQKSNFRGPKRMV-------KCFNCGKEGHIAKNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H +++C++ Q F+ K
Sbjct: 415 CGKEGHQMKECTERQANFLGK 435
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|374350295|gb|AEZ35822.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 494
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQQANVMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 411 GKEGHQMKDCTERQANFLGK 430
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + V ++ G + K CF C K GH A++C
Sbjct: 345 ACQGVGGPSHKARVLAEAMSQVQQANVM--MQRGNFKGPKRIKCFNCGKEGHLARNCRAP 402
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 RKKG------CWKCGKEGHQMKDC 420
>gi|429249246|gb|AFZ77667.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NILMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIL--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|25166782|gb|AAN73575.1|AF484493_2 gag polyprotein precursor [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVHQTNIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ CS+ Q F+ K
Sbjct: 415 GKEGHQLKDCSERQANFLGK 434
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVHQTNIM--MQKGNFRGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH + C
Sbjct: 407 RKKG------CWKCGKEGHQLKDC 424
>gi|396075649|gb|AFN81333.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQAGIMMQRGNFKGPRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + + CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQQAGIM--MQRGNFKGPRKIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|351706763|gb|EHB09682.1| Zinc finger CCHC domain-containing protein 9 [Heterocephalus
glaber]
Length = 271
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C +A++ + C+ CGS EH + +C D CF+C
Sbjct: 130 CFHCRKPGHGVADCPAALENQDMGTGICYRCGSTEHEITKCRAKVDPALGEFPFAKCFVC 189
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
+ GH ++ CPD K + + C CG H C + LD
Sbjct: 190 GEMGHLSRSCPDNPKGLYADGGGCKVCGSVEHLKKDCPENQRLD 233
>gi|242031259|gb|ACS77627.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V + ++ R +GPR C+NCG+EGHMA NCR+ RKK C+ C
Sbjct: 345 EAMSQVNNATVLMQRNNFKGPRRIV-------KCFNCGKEGHMARNCRAP--RKKGCWKC 395
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 396 GQEGHQMKDCTERQANFLGK 415
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 371 CFNCGKEGHMARNCRAPRKKG------CWKCGQEGHQMKDC 405
>gi|37682852|gb|AAQ98430.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 496
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQAQRANIMMQRGNFKGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G + + CF C K GH A++C
Sbjct: 347 ACQGVGGPSHKARVLAEAMSQAQRANIM--MQRGNFKGPRRIKCFNCGKEGHLARNCRAP 404
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 405 RKKG------CWKCGKEGHQMKDC 422
>gi|374429753|gb|AEZ51093.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 489
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSHVQQTNVLMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 375 MQRGNFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|358365333|dbj|GAA81955.1| zinc knuckle transcription factor [Aspergillus kawachii IFO 4308]
Length = 489
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C NCG +GH A NC ++ CF CG H +C+K + C IC K GH A +C
Sbjct: 59 CRNCGSDGHFARNC-PEPRKDIACFNCGEDGHNKSECTKPRIFKGACRICNKEGHPAAEC 117
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
P+K VC C GH C+ + D
Sbjct: 118 PEKA------PDVCKNCKMEGHKTMDCKENRRFD 145
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 10/83 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
C NC +GH A +C + C CGS +H +C + +C C + GH AKD
Sbjct: 300 CVNCSADGHRARDCPEPRRNVFACRNCGSEDHKASECPNPRSAENVECKRCNEMGHFAKD 359
Query: 238 CPDKHKSGFQNAQVCLKCGDSGH 260
CP K + C CG H
Sbjct: 360 CPQKPP-----PRTCRNCGSEDH 377
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 52/126 (41%), Gaps = 31/126 (24%)
Query: 176 PDRGWQTCYNCGEEGHMAVNC---RSA-----------------VKRKKP---CFVCGSL 212
P R C NCG E H A C RSA +K P C CGS
Sbjct: 316 PRRNVFACRNCGSEDHKASECPNPRSAENVECKRCNEMGHFAKDCPQKPPPRTCRNCGSE 375
Query: 213 EHGVRQCSKAQD-----CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+H ++C K +D C C + GH ++DCP K + C CG+ GH + C
Sbjct: 376 DHVAKECDKPRDVSTVTCRNCDEVGHFSRDCPKKRD---YSRVKCNNCGEMGHTIKRCPT 432
Query: 268 SYSLDD 273
+ + +D
Sbjct: 433 ANATED 438
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
Query: 206 CFVCGSLEHGVRQCSKAQD--------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGD 257
C CG+L H R C + ++ C C GHRA+DCP+ ++ F C CG
Sbjct: 273 CNNCGALGHTFRGCKEEREERERVGVKCVNCSADGHRARDCPEPRRNVF----ACRNCGS 328
Query: 258 SGHDMFSCRNSYSLDDLKV 276
H C N S ++++
Sbjct: 329 EDHKASECPNPRSAENVEC 347
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-KAQD-CFICKKGGHRAKDC 238
C+NCGE+GH C K C +C H +C KA D C CK GH+ DC
Sbjct: 80 ACFNCGEDGHNKSECTKPRIFKGACRICNKEGHPAAECPEKAPDVCKNCKMEGHKTMDC 138
>gi|301761700|ref|XP_002916268.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Ailuropoda melanoleuca]
gi|281350303|gb|EFB25887.1| hypothetical protein PANDA_004333 [Ailuropoda melanoleuca]
Length = 271
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C +A++ + C+ CGS EH + +C D CF+C
Sbjct: 130 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCRAKVDPALGEFPFAKCFVC 189
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
+ GH ++ CPD K + + C CG H C S + D +
Sbjct: 190 GEMGHLSRSCPDNPKGLYADGGCCRLCGSVEHFKKDCPESQNSDRM 235
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C+K GH DCP ++ +C +CG + H++ CR
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCR 171
>gi|87131043|gb|ABD24125.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V + NI+++K RG R C+NCG+EGH+A NCR+ RKK C+
Sbjct: 363 EAMSQVHQTTNIMMQKGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWK 412
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 413 CGKEGHQMKDCTERQANFLGK 433
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 389 CFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKDC 423
>gi|71418282|ref|XP_810805.1| universal minicircle sequence binding protein (UMSBP) [Trypanosoma
cruzi strain CL Brener]
gi|16225904|gb|AAL16022.1|AF420314_1 zinc finger protein PDZ5 [Trypanosoma cruzi]
gi|70875394|gb|EAN88954.1| universal minicircle sequence binding protein (UMSBP) [Trypanosoma
cruzi]
Length = 134
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 178 RGWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSKA-------QDCFI 227
RG + CYNCG+ GH++ C + V + C+ CG + H R+C + C+
Sbjct: 8 RGSRACYNCGQPGHLSRECPTRPPGVMGDRACYNCGRMGHLSRECPTRPPGVMGDRACYN 67
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQ--VCLKCGDSGHDMFSCRNS 268
C + GH +++CP++ GF+ C C GH C N+
Sbjct: 68 CGRMGHLSRECPNRPAGGFRGVARGACYHCQQEGHLARDCPNA 110
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
Query: 179 GWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSKAQD----------C 225
G + CYNCG GH++ C + V + C+ CG + H R+C C
Sbjct: 35 GDRACYNCGRMGHLSRECPTRPPGVMGDRACYNCGRMGHLSRECPNRPAGGFRGVARGAC 94
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ C++ GH A+DCP+ G + C CG +GH +C
Sbjct: 95 YHCQQEGHLARDCPNAPPGG---ERACYNCGQTGHTSRAC 131
>gi|37682862|gb|AAQ98439.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 490
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQAQHANIMMQRGNFKGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G + + CF C K GH A++C
Sbjct: 347 ACQGVGGPSHKARVLAEAMSQAQHANIM--MQRGNFKGPRRIKCFNCGKEGHLARNCRAP 404
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 405 RKKG------CWKCGKEGHQMKDC 422
>gi|429249180|gb|AFZ77634.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G+ + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQKGIFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|374429765|gb|AEZ51102.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 491
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ S+ ++ R +GPR C+NCG++GH+A NCR+ RKK C+ C
Sbjct: 361 EAMSHVQQSNVMMQRGNFKGPRKIK--------CFNCGKDGHLAKNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 411 GKEGHQMKDCNERQANFLGK 430
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 386 CFNCGKDGHLAKNCRAPRKKG------CWKCGKEGHQMKDC 420
>gi|373842354|gb|AEY77166.1| gag protein [Human immunodeficiency virus]
Length = 495
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQNTNIMMQKGIFKGPKRIK--------CFNCGKEGHIAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G+ + K CF C K GH AK+C K G C KCG GH M C
Sbjct: 377 MQKGIFKGPKRIKCFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|373842344|gb|AEY77161.1| gag protein [Human immunodeficiency virus]
Length = 498
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKAKVLAEAMSHAQQTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|254667095|gb|ACT76486.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C + GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGREGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|270015485|gb|EFA11933.1| hypothetical protein TcasGA2_TC001891 [Tribolium castaneum]
Length = 1184
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
CY C E GHMA C+ V R K C CG H V+ C K C +C GHRAK
Sbjct: 1112 CYRCWEPGHMAARCQ-GVDRSKLCHRCGEEGHSVKTCEKEMFCPVCGVRGHRAK 1164
>gi|242031243|gb|ACS77619.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V + ++ R +GPR C+NCG+EGHMA NCR+ RKK C+ C
Sbjct: 345 EAMSQVNNATVLMQRNNFKGPRRIV-------KCFNCGKEGHMAKNCRAP--RKKGCWKC 395
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 396 GQEGHQMKDCTERQANFLGK 415
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 371 CFNCGKEGHMAKNCRAPRKKG------CWKCGQEGHQMKDC 405
>gi|374350455|gb|AEZ35929.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 493
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVQHTNIMMQKGNFKGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 411
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 412 GKEGHQMKDCTERQANFLGK 431
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 421
>gi|409684256|gb|AFV34179.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQANIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKAKVLAEAMSQVQQANIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|344272696|ref|XP_003408167.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Loxodonta africana]
Length = 270
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C +A++ + C+ CGS EH + +C D CF+C
Sbjct: 129 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVC 188
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
+ GH ++ CPD K + + C CG H C S + D +
Sbjct: 189 GEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHYKKDCPESKNSDQI 234
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+
Sbjct: 119 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCK 170
>gi|384247042|gb|EIE20530.1| hypothetical protein COCSUDRAFT_10924, partial [Coccomyxa
subellipsoidea C-169]
Length = 102
Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ CG +GHMA +C + +R++PC +CG H QCS C C+ G C ++
Sbjct: 1 CFKCGGQGHMARDCPNE-ERQRPCHLCGQFGHTRYQCSNTLLCIHCRAEG----GCTGEY 55
Query: 243 KSGFQNAQVCLKCGDSGH 260
G +C+ CG GH
Sbjct: 56 LEGDLRQALCVACGRRGH 73
>gi|331029866|gb|AEC50061.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQHTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|327263026|ref|XP_003216322.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Anolis carolinensis]
Length = 262
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 14/105 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C + ++ + CF CGS EH + +C D CFI
Sbjct: 120 VCFHCRQPGHGVADCPAVLESQDMGTGICFRCGSTEHEISKCRAKIDPALGEFPYAKCFI 179
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
C + GH ++ CPD K + + C CG H C + S D
Sbjct: 180 CGEMGHLSRSCPDNPKGLYAHGGSCRICGSVEHFKRDCPENQSSD 224
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
A CF C++ GH DCP +S +C +CG + H++ CR
Sbjct: 118 AMVCFHCRQPGHGVADCPAVLESQDMGTGICFRCGSTEHEISKCR 162
>gi|171694371|ref|XP_001912110.1| hypothetical protein [Podospora anserina S mat+]
gi|170947134|emb|CAP73939.1| unnamed protein product [Podospora anserina S mat+]
Length = 145
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 17/100 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVK--------------RKKPCFVCGSLEHGVRQCSKAQDCFIC 228
CY CGE GH+A NC+ +K C+ CG + H R C C+ C
Sbjct: 48 CYKCGEVGHIARNCQKGGNSYGGGYNSGYGGNFNQKTCYSCGGMGHLSRDCVNGNKCYNC 107
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
GH +++CP + G ++C KC SGH C NS
Sbjct: 108 GVSGHLSRECPKESTGG---EKICYKCQQSGHVQSQCPNS 144
>gi|429249222|gb|AFZ77655.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 375 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 424
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 425 CTERQANFLGK 435
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 350 ACQGVGGPGHKARVLAEAMSQAQHANIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 407
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 RKKG------CWKCGKEGHQMKDC 425
>gi|373842350|gb|AEY77164.1| gag protein [Human immunodeficiency virus]
Length = 498
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + + +GP+ C+NCG+EGH+A NCR+ RK+ C+ C
Sbjct: 365 EAMSQVQHTNILMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKRGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHTNIL--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKRG------CWKCGKEGHQMKDC 424
>gi|300719877|gb|ADK32890.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 158 SDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVR 217
S N++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 369 SMNMMQRSNFKGPRRII-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMK 419
Query: 218 QCSKAQDCFICK 229
C++ Q F+ K
Sbjct: 420 DCTERQANFLGK 431
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 421
>gi|270015488|gb|EFA11936.1| hypothetical protein TcasGA2_TC001894 [Tribolium castaneum]
Length = 502
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
CY C E GHMA C+ V R K C CG H V+ C K C +C GHRAK
Sbjct: 430 CYRCWEPGHMAARCQ-GVDRSKLCHRCGEEGHSVKTCEKEMFCPVCGVRGHRAK 482
>gi|429249298|gb|AFZ77693.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C + GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQHTNIM--MQKGIFKGPKRIKCFNCGREGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|68522114|gb|AAY98703.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H V+
Sbjct: 372 NIMMQKSNFKGPRRII-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQVKD 422
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 423 CTERQANFLGK 433
>gi|451170592|gb|AGF32985.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C + GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGREGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|373842384|gb|AEY77181.1| gag protein [Human immunodeficiency virus]
Length = 498
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQAQQANIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|108860366|dbj|BAE95891.1| Gag [Human immunodeficiency virus 1]
Length = 496
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQAQHANIMMQRGNFKGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G + + CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQHANIM--MQRGNFKGPRRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|32766032|gb|AAP69081.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 370 NIMMQKSNFKGPRRII-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKE 420
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 421 CTERQANFLGK 431
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 421
>gi|409684286|gb|AFV34206.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C + GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGREGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|409684276|gb|AFV34197.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C + GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGREGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|408387760|gb|EKJ67470.1| hypothetical protein FPSE_12389 [Fusarium pseudograminearum CS3096]
Length = 180
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 21/112 (18%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC------SKAQDCFI 227
D P +G CYNCG EGHM+ +C +K K C+ CG H R C +A +C+
Sbjct: 28 DCPTKGPAKCYNCGGEGHMSRDCTEPMKDNKSCYKCGQPGHISRDCPMSGGSGQATECYK 87
Query: 228 CKKGGHRAKDCPDKHKSGFQN------------AQVCLKCGDSGHDMFSCRN 267
C + GH A++C +KS + N + C CG GH C N
Sbjct: 88 CGEIGHIARNC---NKSSYGNNYGGGFQQQGGAGKTCYSCGGFGHMSRECVN 136
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 16/91 (17%)
Query: 183 CYNCGEEGHMAVNCRSA-------------VKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CY CGE GH+A NC + K C+ CG H R+C C+ C
Sbjct: 85 CYKCGEIGHIARNCNKSSYGNNYGGGFQQQGGAGKTCYSCGGFGHMSRECVNGMKCYNCG 144
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+ GH ++DCP + G ++C KC GH
Sbjct: 145 ESGHYSRDCPKESAGG---EKICYKCQQPGH 172
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRA 235
+TCY+CG GHM+ C + +K C+ CG H R C K C+ C++ GH
Sbjct: 119 KTCYSCGGFGHMSRECVNGMK----CYNCGESGHYSRDCPKESAGGEKICYKCQQPGHVQ 174
Query: 236 KDCP 239
CP
Sbjct: 175 SQCP 178
>gi|259129245|gb|ACV95278.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ ++ ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHMQQANIMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSHMQQANIM--MQRGNFRGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|121645193|gb|ABM63552.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|409181610|gb|AFV26831.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ S ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVQQSSTMMQRGNFRGQRTIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 411
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 412 GKEGHQMKDCTERQANFLGR 431
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + ++ G + + CF C K GH A++C
Sbjct: 347 CQGVGGPGHKARVLAEAMSQVQQSSTM--MQRGNFRGQRTIKCFNCGKEGHLARNCRAPR 404
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 405 KKG------CWKCGKEGHQMKDC 421
>gi|407920706|gb|EKG13888.1| Zinc finger CCHC-type protein [Macrophomina phaseolina MS6]
Length = 347
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 182 TCYNCGEEGHMAVNCRSAVK--RKKPCFVCGSLEHGVRQC----SKAQDCFICKKGGHRA 235
+CYNCG GH+ VNC A + + C+ CG + H +C + C+ C + GHR
Sbjct: 110 SCYNCGGHGHIKVNCPEAPRGGGGQECYGCGQVGHRKSECPNGGGGGRACYNCGQYGHRK 169
Query: 236 KDCPDKHKS--GFQNAQVCLKCGDSGHDMFSCRN 267
DCP+ + + C CG+ GH C N
Sbjct: 170 ADCPNPSQGDNSGGGGRPCYNCGEIGHLKSECTN 203
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 29/117 (24%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKR------KKPCFVCGSLEHGVRQCSKAQD-------- 224
G + CYNCG+ GH +C + + +PC+ CG + H +C+ +
Sbjct: 155 GGRACYNCGQYGHRKADCPNPSQGDNSGGGGRPCYNCGEIGHLKSECTNPINPATGGGDD 214
Query: 225 --CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC--RNSYSLDDLKVC 277
CF C K GH A+DC C C GH F C + YS VC
Sbjct: 215 RLCFKCHKVGHMARDC-----------NFCPNCEQEGHGFFECHLKKDYSKITCTVC 260
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 12/103 (11%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC----------SKAQD 224
P G Q CY CG+ GH C + + C+ CG H C +
Sbjct: 128 PRGGGGQECYGCGQVGHRKSECPNGGGGGRACYNCGQYGHRKADCPNPSQGDNSGGGGRP 187
Query: 225 CFICKKGGHRAKDC--PDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C+ C + GH +C P +G + ++C KC GH C
Sbjct: 188 CYNCGEIGHLKSECTNPINPATGGGDDRLCFKCHKVGHMARDC 230
>gi|255986766|gb|ACU50765.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S I+++K RGPR C+NCG+EGH+A NCR+ RK+ C+
Sbjct: 365 EAMSQVTNSATIMMQKGNFRGPRKII-------KCFNCGKEGHLAKNCRAP--RKRGCWK 415
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 416 CGKEGHQMKDCTERQANFLGK 436
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 392 CFNCGKEGHLAKNCRAPRKRG------CWKCGKEGHQMKDC 426
>gi|93210942|gb|ABF00892.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++++ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSSINNTNIMMQRGNFKGPRRII-------KCFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 183 CYNCGEEGHMA---VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
C G GH A S++ G+ + G R+ K CF C K GH A++C
Sbjct: 347 CQGVGGPGHKARVLAEAMSSINNTNIMMQRGNFK-GPRRIIK---CFNCGKEGHLARNCR 402
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 APRKKG------CWKCGKEGHQMKDC 422
>gi|32766020|gb|AAP69075.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 370 NIMMQKSNFKGPRRII-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKE 420
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 421 CTERQANFLGK 431
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 421
>gi|451170574|gb|AGF32969.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C + GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGREGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|270015347|gb|EFA11795.1| hypothetical protein TcasGA2_TC008574 [Tribolium castaneum]
Length = 851
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
CY C E GHMA C+ V R K C CG H V+ C K C +C GHRAK
Sbjct: 779 CYRCWEPGHMAARCQ-GVDRSKLCHRCGEEGHSVKTCEKEMFCPVCGVRGHRAK 831
>gi|32766028|gb|AAP69079.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 370 NIMMQKSNFKGPRRII-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKE 420
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 421 CTERQANFLGK 431
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 421
>gi|371559534|gb|AEX36710.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQAQNANIM--MQKSNFRGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|326417020|gb|ADZ73354.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQANVMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + V ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSHVQQANVM--MQRGNFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|429249310|gb|AFZ77699.1| gag protein [Human immunodeficiency virus 1]
Length = 506
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 378 NIMMQKGFFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 427
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 428 CTERQANFLGK 438
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 353 ACQGVGGPSHKARVLAEAMSQAQHTNIM--MQKGFFKGPKRIKCFNCGKEGHLARNCRAP 410
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 411 RKKG------CWKCGKEGHQMKDC 428
>gi|189239868|ref|XP_001807187.1| PREDICTED: similar to zinc finger protein [Tribolium castaneum]
Length = 438
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 39/93 (41%), Gaps = 13/93 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP------CFVCGSLEHGVRQCS-------KAQDCFI 227
+ C+NC + GH C K CF CGS EH +C K CFI
Sbjct: 300 KVCFNCRKSGHNLSECPELGKEIAESSGTGICFKCGSTEHTHFECKVVRGQEFKFAQCFI 359
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C + GH A+ CPD + + C CGD H
Sbjct: 360 CHEQGHIARQCPDNARGLYPKGGACKVCGDVTH 392
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 225 CFICKKGGHRAKDCPD--KHKSGFQNAQVCLKCGDSGHDMFSCR 266
CF C+K GH +CP+ K + +C KCG + H F C+
Sbjct: 302 CFNCRKSGHNLSECPELGKEIAESSGTGICFKCGSTEHTHFECK 345
>gi|164415890|gb|AAU14975.2| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG EH ++ C++ Q F+ K
Sbjct: 389 CFNCGKEGHLARNCRAP--RKKGCWKCGREEHQMKDCTERQANFLGK 433
>gi|32766026|gb|AAP69078.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 370 NIMMQKSNFKGPRRII-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKE 420
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 421 CTERQANFLGK 431
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 421
>gi|18699193|gb|AAL78453.1|AF413987_8 gag polyprotein [Human immunodeficiency virus 1]
Length = 497
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 364 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 413
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 414 GKEGHQMKNCTERQANFLGR 433
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M +C
Sbjct: 389 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKNC 423
>gi|334884539|gb|AEH21380.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 498
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQTNVMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|255739457|gb|ACU31666.1| gag protein [Human immunodeficiency virus 1]
gi|255739459|gb|ACU31667.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 370 SSNIMMQKSNFKGPRRI-------VKCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQM 420
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 421 KDCTERQANFLGK 433
Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 389 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 423
>gi|332021649|gb|EGI62008.1| Zinc finger CCHC domain-containing protein 9 [Acromyrmex
echinatior]
Length = 421
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPC----FVCGSLEHGVRQCSKAQD-------CFICKKG 231
C+NC + GH +C + R + C F CGS EH +C +D CFIC++
Sbjct: 284 CFNCRKSGHNLSDC-PELDRSEACTGICFKCGSTEHTHFECKVNKDSIYRYAKCFICREQ 342
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH A CPD K + + C CG H
Sbjct: 343 GHIAMQCPDNPKGVYPHGGCCKICGAVTH 371
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
CF C+K GH DCP+ +S +C KCG + H F C+
Sbjct: 284 CFNCRKSGHNLSDCPELDRSEACTG-ICFKCGSTEHTHFECK 324
>gi|281331908|emb|CAY83124.1| gag-pol fusion polyprotein precursor [Human immunodeficiency virus
1]
Length = 1433
Score = 54.3 bits (129), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
C+NCG+EGH+A NCR+ RKK C+ CGS H ++ C++ Q F+
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGSEGHQMKDCTERQANFL 432
Score = 41.6 bits (96), Expect = 0.43, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQIQNTNIM--MQRGNFKGQKRIKCFNCGKEGHLARNCRAPR 407
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 KKG------CWKCGSEGHQMKDC 424
>gi|429249256|gb|AFZ77672.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGFFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQHTNIM--MQKGFFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|297263145|ref|XP_001093980.2| PREDICTED: hypothetical protein LOC705622 [Macaca mulatta]
Length = 343
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH KDC
Sbjct: 239 ACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDC 298
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C +CG++GH +C
Sbjct: 299 ---------TKVKCYRCGETGHVAINC 316
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 11/81 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH A +C
Sbjct: 262 QCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGHVAINC-- 316
Query: 241 KHKSGFQNAQV-CLKCGDSGH 260
+ ++V C +CG+SGH
Sbjct: 317 -----SKTSEVNCYRCGESGH 332
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 14/83 (16%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CGE GH+A +C ++ C+ CG H + C + Q C+ C K GH A+D
Sbjct: 220 CYRCGESGHLAKDCD---LQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARD 276
Query: 238 CPDKHKSGFQNAQVCLKCGDSGH 260
C + Q C CG+ GH
Sbjct: 277 C------DHADEQKCYSCGEFGH 293
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 22/97 (22%)
Query: 183 CYNCGEEGHMAVNCRSA----------------VKRKKP--CFVCGSLEHGVRQCSKAQD 224
C+ CG GH A C + V P C+ CG H + C +D
Sbjct: 179 CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 238
Query: 225 -CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C+ C +GGH AKDC + + + Q C CG GH
Sbjct: 239 ACYNCGRGGHIAKDCKEPKR---EREQCCYNCGKPGH 272
>gi|46243164|gb|AAS83690.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGQEGHQMKD 420
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 421 CTERQANFLGK 431
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ + K CF C K GH A++C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQAQNANIM--MQKSNFRGPKRIKCFNCGKEGHLARNCRAP 403
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 RKKG------CWKCGQEGHQMKDC 421
>gi|429249264|gb|AFZ77676.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CNERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQHTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|225056152|gb|ACN80882.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S ++++K RGP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 364 EAMSQVTSSATVMMQKSNFRGPKRTV-------KCFNCGKEGHIAKNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H +++C++ Q F+ K
Sbjct: 415 CGKEGHQMKECTERQANFLGK 435
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + + R + CF C K GH AK+C
Sbjct: 349 CQGVGGPSHKARVLAEAMSQVTSSATVMMQKSNFRGPKRTVKCFNCGKEGHIAKNCRAPR 408
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 409 KKG------CWKCGKEGHQMKEC 425
>gi|118426970|gb|ABK91236.1| gag protein [Human immunodeficiency virus 1]
Length = 155
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 51
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 52 GKEGHQMKDCTERQANFLGK 71
>gi|112351458|gb|ABI15249.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 372 NIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 422 CTERQANFLGK 432
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ + K CF C K GH A++C
Sbjct: 347 ACQGVGGPGHKARVLAEAMSQAQNANIM--MQKSNFRGPKRIKCFNCGKEGHLARNCRAP 404
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 405 RKKG------CWKCGKEGHQMKDC 422
>gi|328834216|gb|AEB52650.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V+ ++ ++++K RGP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMSQVQNANIMMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 415 CGKEGHQMKDCTERQANFLGK 435
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 425
>gi|310792827|gb|EFQ28288.1| zinc knuckle [Glomerella graminicola M1.001]
Length = 454
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ------DCFICKKGGHRA 235
TCYNCGEEGH +C + K C CG H V +C++ + +C C + GH +
Sbjct: 274 TCYNCGEEGHRVRDCPTPRVDKFACKNCGQSGHKVSECTEPRKAGDDVECNKCHEMGHFS 333
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+DCP + G + C CG+ GH C
Sbjct: 334 RDCP---QGGGGGGRACHNCGNEGHISREC 360
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 9/95 (9%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKR-KKPCFVCGSLEHGVRQC--SKAQDCFICKKGGHRAKD 237
+ C+NCG+ GH +C K C CG H R C + A C IC + GH KD
Sbjct: 32 RACFNCGQSGHNKADCPERPKGFDGTCRACGQEGHSRRDCPDAPAMTCRICGEEGHIRKD 91
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
CP K A C C + GH+ C+ +D
Sbjct: 92 CPQK------PADACRNCLEEGHETVECKAPRKID 120
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 10/95 (10%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKK----PCFVCGSLEHGVRQCSKAQ-DCFIC 228
+P R Q C NC E GH++ +C K C+ CG H VR C + D F C
Sbjct: 239 EPVSRLLQKCINCNELGHISKSCPQEAMEKARITITCYNCGEEGHRVRDCPTPRVDKFAC 298
Query: 229 K---KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
K + GH+ +C + K+G + C KC + GH
Sbjct: 299 KNCGQSGHKVSECTEPRKAG--DDVECNKCHEMGH 331
>gi|148666814|gb|EDK99230.1| cellular nucleic acid binding protein, isoform CRA_c [Mus musculus]
Length = 149
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 12/91 (13%)
Query: 178 RGWQTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHR 234
R TCYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C + GH
Sbjct: 41 RRMVTCYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSCGEFGHI 100
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
KDC C +CG++GH +C
Sbjct: 101 QKDCTKVK---------CYRCGETGHVAINC 122
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 11/93 (11%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
+P Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH
Sbjct: 61 EPKREREQCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGH 117
Query: 234 RAKDCPDKHKSGFQNAQV-CLKCGDSGHDMFSC 265
A +C + ++V C +CG+SGH C
Sbjct: 118 VAINCS-------KTSEVNCYRCGESGHLAREC 143
>gi|259126488|gb|ACV94218.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHANIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GREGHQMKDCTERQANFLGK 434
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQKGNFRGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGREGHQMKDC 424
>gi|41353552|gb|AAS01339.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNANIMMQKSSFRGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ + K CF C + GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQNANIM--MQKSSFRGPKRIKCFNCGREGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|407739094|gb|AFU31929.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|395825575|ref|XP_003786003.1| PREDICTED: zinc finger CCHC domain-containing protein 9 [Otolemur
garnettii]
Length = 271
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 14/106 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + GH +C +A++ + C+ CGS EH + +C D CF+C
Sbjct: 130 CFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPAFGEFPFAKCFVC 189
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
+ GH ++ CPD K + + C CG H C S + D +
Sbjct: 190 GEMGHLSRSCPDNPKGLYADGGGCKLCGSVKHLKKDCPESQNSDQM 235
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCK 171
>gi|300720165|gb|ADK33082.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 STNIMMQKSNFKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 37.4 bits (85), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|371559494|gb|AEX36674.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNTSIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQNTSIM--MQKSNFRGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|299929889|gb|ADJ58152.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQHANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GQEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGQEGHQMKDC 424
>gi|124389776|gb|ABN11070.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + +V R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQAQHQTIMVQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARILAEAMSQAQHQTIM--VQRGNFRGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|410903994|ref|XP_003965478.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Takifugu rubripes]
Length = 274
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 183 CYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCSKAQD----------CFIC 228
C+NC + GH NC A + + C+ CGS EH +++C D CFIC
Sbjct: 135 CFNCRKPGHGLANCPEADRDEEMGRGICYRCGSTEHEIQKCKAKVDPALGEFPYAKCFIC 194
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ GH ++ CPD K + C CG H C
Sbjct: 195 GETGHLSRTCPDNPKGLYAQGGCCRVCGSVEHFQKDC 231
>gi|409181530|gb|AFV26759.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|407739110|gb|AFU31943.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|407739086|gb|AFU31922.1| gag protein [Human immunodeficiency virus 1]
gi|407739102|gb|AFU31936.1| gag protein [Human immunodeficiency virus 1]
gi|407739118|gb|AFU31950.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|300720012|gb|ADK32980.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVNSTNIMMQRSNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|255739379|gb|ACU31627.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 15/81 (18%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SKNIMMQRSNFKGPRKII-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK-----KGG 232
+ C++ Q F+ K KGG
Sbjct: 420 KDCTERQANFLGKIWPSHKGG 440
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|147744220|gb|ABQ51045.1| gag protein [Human immunodeficiency virus 1]
Length = 180
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E +++V+ + ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 53 EAMSSVQQENVMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 102
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 103 GKEGHQMKDCTERQANFLGK 122
>gi|56193075|gb|AAV84145.1| gag protein [Human immunodeficiency virus 1]
Length = 504
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V S+ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVNNSNVMMQRSNFKGPRRNI-------KCFNCGKEGHLARNCRAP--RKKGCWKC 413
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 414 GKEGHQMKDCTERQANFLGK 433
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 389 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 423
>gi|259125591|gb|ACV93845.1| gag protein [Human immunodeficiency virus 1]
gi|259125594|gb|ACV93846.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQAQHTNIMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 347 ACQGVGGPSHKARVLAEAMSQAQHTNIM--MQRGNFRGPKRIKCFNCGKEGHLARNCRAP 404
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 405 RKKG------CWKCGKEGHQMKDC 422
>gi|159125542|gb|EDP50659.1| zinc knuckle transcription factor (CnjB), putative [Aspergillus
fumigatus A1163]
Length = 509
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C NCG +GH A C A ++ CF CG +C+K + C IC K GH A +C
Sbjct: 73 CRNCGGDGHFAREC-PAPRKGMACFNCGEEGRSKAECTKPRVFKGPCRICSKEGHPAAEC 131
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
PD+ VC C GH C + D
Sbjct: 132 PDRP------PDVCKNCQSEGHKTIECTENRKFD 159
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAKD 237
C C E GH A +C A + C CGS +H R C K +D C C++ GH ++D
Sbjct: 354 CKRCNEMGHFAKDCHQAPAPRT-CRNCGSEDHMARDCDKPRDASIVTCRNCEEVGHFSRD 412
Query: 238 CPDK 241
CP K
Sbjct: 413 CPQK 416
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNC---RSAVKR-KKPCFVCGSLEHGVRQCSKAQDCFICKK 230
P D+ C NCGE GH A C R+ V R + C C + H R C++ + + +
Sbjct: 279 PYDKQIPKCGNCGEMGHTARGCKEERALVDRVEVKCVNCNASGHRARDCTEPR---VDRS 335
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKVC 277
H+A DCP+ + C +C + GH C + + + C
Sbjct: 336 PEHKAADCPNPRSA---EGVECKRCNEMGHFAKDCHQAPAPRTCRNC 379
>gi|145350100|ref|XP_001419461.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579692|gb|ABO97754.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 170
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ CG+ GH C K KK C +CG H R C CF C GH+++DCP
Sbjct: 6 CFRCGQGGHREAECELPAK-KKACHLCGYKSHIARDCPHGL-CFNCLTPGHQSRDCPYAR 63
Query: 243 KSGFQNAQ--VCLKCGDSGHDMFSCRNSYSLDDL 274
SG ++AQ CL+CG SGH + C + DL
Sbjct: 64 GSG-RDAQERCCLRCGKSGHVVADCVYRFDASDL 96
>gi|70993356|ref|XP_751525.1| zinc knuckle transcription factor (CnjB) [Aspergillus fumigatus
Af293]
gi|66849159|gb|EAL89487.1| zinc knuckle transcription factor (CnjB), putative [Aspergillus
fumigatus Af293]
Length = 509
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C NCG +GH A C A ++ CF CG +C+K + C IC K GH A +C
Sbjct: 73 CRNCGGDGHFAREC-PAPRKGMACFNCGEEGRSKAECTKPRVFKGPCRICSKEGHPAAEC 131
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
PD+ VC C GH C + D
Sbjct: 132 PDRP------PDVCKNCQSEGHKTIECTENRKFD 159
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAKD 237
C C E GH A +C A + C CGS +H R C K +D C C++ GH ++D
Sbjct: 354 CKRCNEMGHFAKDCHQAPAPRT-CRNCGSEDHMARDCDKPRDASIVTCRNCEEVGHFSRD 412
Query: 238 CPDK 241
CP K
Sbjct: 413 CPQK 416
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNC---RSAVKR-KKPCFVCGSLEHGVRQCSKAQDCFICKK 230
P D+ C NCGE GH A C R+ V R + C C + H R C++ + + +
Sbjct: 279 PYDKQIPKCGNCGEMGHTARGCKEERALVDRVEVKCVNCNASGHRARDCTEPR---VDRS 335
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKVC 277
H+A DCP+ + C +C + GH C + + + C
Sbjct: 336 PEHKAADCPNPRSA---EGVECKRCNEMGHFAKDCHQAPAPRTCRNC 379
>gi|294992867|gb|ADF57549.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H +R C++++ F+ K
Sbjct: 393 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMRDCTESKAHFLGK 437
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 7/88 (7%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A A+ + ++ + +A C+ C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQASGAAAAIMMQKSNFKGPRRAIKCYNCGKEGHLARNCRA 408
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
K G C KCG GH M C S
Sbjct: 409 PRKKG------CWKCGKEGHQMRDCTES 430
>gi|63098410|gb|AAY32450.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 158 SDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVR 217
S N++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 369 SMNMMQRSNFKGPRRII-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMK 419
Query: 218 QCSKAQDCFICK 229
C++ Q F+ K
Sbjct: 420 DCTERQANFLGK 431
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 421
>gi|429249214|gb|AFZ77651.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C + GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQHTNIM--MQKGIFKGPKRIKCFNCGREGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|407739158|gb|AFU31985.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|254667110|gb|ACT76496.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQTQQANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
GS H ++ C++ Q F+ +
Sbjct: 415 GSEGHQMKDCTERQANFLGR 434
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 350 CQGVGGPSHKARVLAEAMSQTQQANIM--MQRGNFKGPKRIKCFNCGKEGHLARNCRAPR 407
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 KKG------CWKCGSEGHQMKDC 424
>gi|255739381|gb|ACU31628.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 15/81 (18%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SKNIMMQRSNFKGPRKII-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK-----KGG 232
+ C++ Q F+ K KGG
Sbjct: 420 KDCTERQANFLGKIWPSHKGG 440
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|407739078|gb|AFU31915.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|331029862|gb|AEC50059.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + + +GP+ C+NCG EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNTKIMMQKGIFKGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G+ + K CF C + GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQNTKIM--MQKGIFKGPKRIKCFNCGREGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|255739665|gb|ACU31770.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V + ++ R RGPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVNNTSIMMQRGNFRGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHLMKDCTEKQANFLGK 432
Score = 37.7 bits (86), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A A+ + + ++ G R + CF C K GH AK+C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQVNNTSIM--MQRGNFRGPRRIVKCFNCGKEGHIAKNCRA 403
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 PRKKG------CWKCGKEGHLMKDC 422
>gi|407740579|gb|AFU33165.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E +++V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSSVQHANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|407739166|gb|AFU31992.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|331029868|gb|AEC50062.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGFFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSHAQQTNIM--MQKGFFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|112351538|gb|ABI15321.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQAQNTNIMMQRSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 413 GKEGHQMKDCTERQANFLGR 432
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|429249228|gb|AFZ77658.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGMFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ +
Sbjct: 424 CTERQANFLGR 434
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQHTNIM--MQKGMFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|407739126|gb|AFU31957.1| gag protein [Human immunodeficiency virus 1]
gi|407739142|gb|AFU31971.1| gag protein [Human immunodeficiency virus 1]
gi|407739150|gb|AFU31978.1| gag protein [Human immunodeficiency virus 1]
gi|407739182|gb|AFU32006.1| gag protein [Human immunodeficiency virus 1]
gi|407739190|gb|AFU32013.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQQANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|363583939|gb|AEW27503.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ +V + +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 358 EAMSQVNNANIMVQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKC 408
Query: 210 GSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
G H ++ C++ Q F+ K +K P
Sbjct: 409 GKEGHQMKDCTERQANFLGKIWPSHSKGRP 438
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 384 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 418
>gi|281331901|emb|CAY83112.1| gag polyprotein [Human immunodeficiency virus 1]
Length = 493
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E +++++ ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 360 EAMSSLQNANIMMQRGNXRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 409
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 410 GKEGHQMKDCNERQANFLGK 429
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 372 MQRGNXRGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 419
>gi|242029050|gb|ACS76555.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|206129499|gb|ACI05350.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R C++ Q F+ K
Sbjct: 387 CFNCGKEGHLAKNCRAP--RKKGCWKCGREGHQMRDCTEGQANFLGK 431
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLAKNCRAPRKKG------CWKCGREGHQMRDC 421
>gi|154345724|ref|XP_001568799.1| putative poly-zinc finger protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134066141|emb|CAM43931.1| putative poly-zinc finger protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 135
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC-----SKAQDCFICKKGGHRAKD 237
CY CG GH + C SA PCF CG H ++C ++ CF C K GHRA++
Sbjct: 3 CYRCGGVGHQSRECTSAAD-SAPCFRCGQPGHVAKECLSTISAEEAPCFFCHKAGHRARE 61
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
CP+ +C C GH C N
Sbjct: 62 CPEAPPK--SETVMCYNCSQKGHIASECTN 89
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 27/104 (25%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKK-PCFVCGSLEHGVRQCSKAQD----------------- 224
C+ CG+ GH+A C S + ++ PCF C H R+C +A
Sbjct: 25 CFRCGQPGHVAKECLSTISAEEAPCFFCHKAGHRARECPEAPPKSETVMCYNCSQKGHIA 84
Query: 225 --------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C++C + GH + CP K + + C KCG GH
Sbjct: 85 SECTNNPHCYLCNEDGHVGRSCPAAPKRSAAD-KTCRKCGKKGH 127
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-------QDCFI 227
PP CYNC ++GH+A C + C++C H R C A + C
Sbjct: 66 PPKSETVMCYNCSQKGHIASECTNNPH----CYLCNEDGHVGRSCPAAPKRSAADKTCRK 121
Query: 228 CKKGGHRAKDCPD 240
C K GH KDCP+
Sbjct: 122 CGKKGHLRKDCPE 134
>gi|409181520|gb|AFV26750.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|388524595|gb|AFK50202.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 140
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 158 SDNIVL--RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG 215
S+N ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H
Sbjct: 16 SNNAIMMQRSNFRGPKRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQ 66
Query: 216 VRQCSKAQDCFICK 229
+++CSK Q F+ K
Sbjct: 67 MKECSKRQANFLGK 80
>gi|363583933|gb|AEW27498.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ +V + +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 358 EAMSQVNNANIMVQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKC 408
Query: 210 GSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
G H ++ C++ Q F+ K +K P
Sbjct: 409 GKEGHQMKDCTERQANFLGKIWPSHSKGRP 438
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 384 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 418
>gi|300720183|gb|ADK33094.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SXNIMMQRSNFKGPRKMI-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|242029054|gb|ACS76557.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|148469876|gb|ABQ65867.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 413 GKEGHQMKDCTERQANFLGR 432
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|451168215|gb|AGF30924.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 16/79 (20%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 372 NIMMQKGNFKGPRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGQEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKLWPSHKGG 440
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + ++ G + + CF C K GH A++C
Sbjct: 347 ACQGVGGPGHKARVLAEAMSQVNNANIM--MQKGNFKGPRRIKCFNCGKEGHLARNCRAP 404
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 405 RKKG------CWKCGQEGHQMKDC 422
>gi|358390183|gb|EHK39589.1| hypothetical protein TRIATDRAFT_302941 [Trichoderma atroviride IMI
206040]
Length = 176
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 51/117 (43%), Gaps = 25/117 (21%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ---------D 224
D P +G CYNCG EGH++ +C +K K C+ CG H R C +A +
Sbjct: 21 DCPTKGPAKCYNCGGEGHLSRDCTEPMKDNKSCYKCGQPGHISRDCPQAGAAGGGQAGTE 80
Query: 225 CFICKKGGHRAKDCPDKHKSGFQN-------------AQVCLKCGDSGHDMFSCRNS 268
C+ C + GH A+ CP KSGF + C CG GH C N
Sbjct: 81 CYKCGEKGHIARSCP---KSGFGGNSYGGNSGYGGGAGKTCYSCGGYGHMSRECVNG 134
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Query: 183 CYNCGEEGHMAVNCRSA--------------VKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
CY CGE+GH+A +C + K C+ CG H R+C C+ C
Sbjct: 81 CYKCGEKGHIARSCPKSGFGGNSYGGNSGYGGGAGKTCYSCGGYGHMSRECVNGMKCYNC 140
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ GH ++DCP + G ++C KC GH C N
Sbjct: 141 GESGHYSRDCPKEAAGG---EKICYKCQQGGHVQAQCPN 176
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----QDCFICKKGGHRAKD 237
CY+CG GH A +C + K C+ CG H R C++ + C+ C + GH ++D
Sbjct: 8 ACYSCGNAGHQARDCPTKGPAK--CYNCGGEGHLSRDCTEPMKDNKSCYKCGQPGHISRD 65
Query: 238 CPDKHKSGFQNAQV-CLKCGDSGHDMFSCRNS 268
CP +G A C KCG+ GH SC S
Sbjct: 66 CPQAGAAGGGQAGTECYKCGEKGHIARSCPKS 97
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRA 235
+TCY+CG GHM+ C + +K C+ CG H R C K C+ C++GGH
Sbjct: 116 KTCYSCGGYGHMSRECVNGMK----CYNCGESGHYSRDCPKEAAGGEKICYKCQQGGHVQ 171
Query: 236 KDCPD 240
CP+
Sbjct: 172 AQCPN 176
>gi|299929705|gb|ADJ58060.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQHTNVMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|148469916|gb|ABQ65903.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 413 GKEGHQMKDCTERQANFLGR 432
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|37682521|gb|AAQ98209.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V+ ++NI++ R RG + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 363 EAMSQVQHTNNIMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 412
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 413 CGKEGHQMKDCTERQANFLGK 433
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 376 MQRGNFRGQKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 423
>gi|56609241|gb|AAW03202.1| gag protein [Human immunodeficiency virus 1]
gi|56609291|gb|AAW03247.1| gag protein [Human immunodeficiency virus 1]
gi|56609327|gb|AAW03279.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 413 GKEGHQMKDCTERQANFLGR 432
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|56609261|gb|AAW03220.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 413 GKEGHQMKDCTERQANFLGR 432
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|242028231|gb|ACS76151.1| gag protein [Human immunodeficiency virus 1]
Length = 458
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 350 EAMSQVNNTNIMIQRSNFKGPRRI-------VKCFNCGKEGHIARNCRAP--RKKGCWKC 400
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 401 GKEGHQMKDCTERQANFLGK 420
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 376 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 410
>gi|67423413|dbj|BAD99524.1| VASA RNA helicase [Moina macrocopa]
Length = 843
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQC-------SKAQDCFIC 228
G + C+NCG+ HM+ C + K + C+ CG H R+C S C+ C
Sbjct: 200 GSRGCFNCGDTNHMSRECPNPKKEGNSRGTCYNCGDSGHMSRECPNPKKESSSRGTCYNC 259
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ GH +KDCP+ + ++ C CG+ GH C
Sbjct: 260 QQEGHMSKDCPNPK---VERSRGCRNCGEDGHMAREC 293
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 182 TCYNCGEEGHMAVNCRSA-VKRKKPCFVCGSLEHGVRQCSK-------------AQDCFI 227
TCYNC +EGHM+ +C + V+R + C CG H R+C + CF
Sbjct: 255 TCYNCQQEGHMSKDCPNPKVERSRGCRNCGEDGHMARECPSKNGDGNGGGDRGGNRACFN 314
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C + GH++KDC S C +C + H
Sbjct: 315 CGEEGHQSKDCEKPRTSKGGGGGACFRCQSTDH 347
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 13/97 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR---KKPCFVCGSLEHGVRQCS-----KAQDCFICKKGGH 233
TCYNCG+ GHM+ C + K + C+ C H + C +++ C C + GH
Sbjct: 229 TCYNCGDSGHMSRECPNPKKESSSRGTCYNCQQEGHMSKDCPNPKVERSRGCRNCGEDGH 288
Query: 234 RAKDCPDK-----HKSGFQNAQVCLKCGDSGHDMFSC 265
A++CP K + C CG+ GH C
Sbjct: 289 MARECPSKNGDGNGGGDRGGNRACFNCGEEGHQSKDC 325
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 17/77 (22%)
Query: 183 CYNCGEEGHMAVNCRS---------AVKRKKPCFVCGSLEHGVRQCSKAQD--------C 225
C NCGE+GHMA C S + CF CG H + C K + C
Sbjct: 280 CRNCGEDGHMARECPSKNGDGNGGGDRGGNRACFNCGEEGHQSKDCEKPRTSKGGGGGAC 339
Query: 226 FICKKGGHRAKDCPDKH 242
F C+ H AKDCP+ +
Sbjct: 340 FRCQSTDHMAKDCPEPN 356
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 215 GVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
G RQ ++ CF C H +++CP+ K G + C CGDSGH C N
Sbjct: 194 GPRQGGGSRGCFNCGDTNHMSRECPNPKKEG-NSRGTCYNCGDSGHMSRECPN 245
>gi|74096143|ref|NP_001027593.1| DEAD-Box Protein [Ciona intestinalis]
gi|4126716|dbj|BAA36711.1| DEAD-Box Protein [Ciona intestinalis]
Length = 659
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C+ CGEEGHM+ C GS R ++++ CF C + GH +++CP
Sbjct: 53 CFKCGEEGHMSRECPQNT---------GSGFGDSRGGARSKGCFKCGEEGHMSRECPQNT 103
Query: 243 KSGFQNAQ------VCLKCGDSGH 260
SGF +++ C KCG+ GH
Sbjct: 104 GSGFGDSRGGARSKGCFKCGEEGH 127
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQ------VCLKCGDSGH 260
R ++++ CF C + GH +++CP SGF +++ C KCG+ GH
Sbjct: 45 RGGARSKGCFKCGEEGHMSRECPQNTGSGFGDSRGGARSKGCFKCGEEGH 94
>gi|56609311|gb|AAW03265.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 413 GKEGHQMKDCTERQANFLGR 432
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|259124095|gb|ACV93372.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHPNIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + + P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHPNIM---MQKGNFRGPKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|296826428|ref|XP_002850974.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238838528|gb|EEQ28190.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 495
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
TC NCG+ GH A C K CF CG H C + C IC+K GH A +
Sbjct: 52 TCRNCGQSGHFARECPEPRKPTGACFNCGQEGHNKSDCPNPRVFTGTCRICEKVGHPAAE 111
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKV 276
CP++ +C C GH C + + +
Sbjct: 112 CPERP------PDICKNCKGEGHKTMECTQNRKFEQHNI 144
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 20/117 (17%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCR---SAVKR-KKPCFVCGSLEHGVRQCSKAQ----DCF 226
P DR C NCG+ GH+ +C+ S V+R + C C H R C +A+ C
Sbjct: 260 PLDRQVPKCSNCGKMGHIMKSCKEELSVVERVEVKCVNCKQPGHRARDCKEARVDRFACR 319
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH---------DMFSCRNSYSLDDL 274
C KGGHR+ +CP+ + C +C + GH +CRN S D +
Sbjct: 320 NCGKGGHRSTECPEPRSA---EGVECKRCNEVGHFAKDCPQGGGSRACRNCGSEDHI 373
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 10/97 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
C NC + GH A +C+ A + C CG H +C + + +C C + GH AKD
Sbjct: 295 CVNCKQPGHRARDCKEARVDRFACRNCGKGGHRSTECPEPRSAEGVECKRCNEVGHFAKD 354
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
CP S + C CG H C ++ ++
Sbjct: 355 CPQGGGS-----RACRNCGSEDHIAKDCDQPRNMANV 386
>gi|118426834|gb|ABK91168.1| gag protein [Human immunodeficiency virus 1]
Length = 172
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + LRGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNLRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|339786812|gb|AEK11572.1| gag protein [Human immunodeficiency virus 1]
gi|402229547|gb|AFQ36642.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 491
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 10/75 (13%)
Query: 156 EISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEH 214
+ NI++ R L+GPR C+NCG+EGH+A NCR+ RKK C+ CG H
Sbjct: 366 QTQSNILMQRSNLKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGH 416
Query: 215 GVRQCSKAQDCFICK 229
++ C++ Q F+ K
Sbjct: 417 QMKDCTERQANFLGK 431
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 421
>gi|242029052|gb|ACS76556.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|242029046|gb|ACS76553.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 279 CFNCGKEGHIARNCRAPRKKG------CWKCGREGHQMKDC 313
>gi|259124159|gb|ACV93403.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHPNIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + + P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHPNIM---MQKGNFRGPKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|148469896|gb|ABQ65885.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 413 GKEGHQMKDCTERQANFLGR 432
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|371559514|gb|AEX36692.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|299929799|gb|ADJ58107.1| gag protein [Human immunodeficiency virus 1]
Length = 486
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQAQHANVMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + V ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQHANVM--MQRGNFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|299929797|gb|ADJ58106.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQNANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GQEGHQMKDCTERQANFLGK 434
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGQEGHQMKDC 424
>gi|242029062|gb|ACS76561.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|242029042|gb|ACS76551.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNVMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 279 CFNCGKEGHIARNCRAPRKKG------CWKCGREGHQMKDC 313
>gi|259125662|gb|ACV93874.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHPNIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + + P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHPNIM---MQKGNFRGPKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|259125328|gb|ACV93726.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG EH ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGREEHQMKDCTERQANFLGK 436
>gi|56609321|gb|AAW03274.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 413 GKEGHQMKDCTERQANFLGR 432
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|242029058|gb|ACS76559.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|259125625|gb|ACV93859.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHPNIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + + P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHPNIM---MQKGNFRGPKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|303278606|ref|XP_003058596.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459756|gb|EEH57051.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 291
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 206 CFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQN-AQVCLKCGDSGHDMFS 264
C +CG L+H R C + CF C K GH+++DCP+ G + A CL+CG GH
Sbjct: 1 CHLCGYLDHLARDCRRGL-CFNCLKSGHQSRDCPEPRGVGRETQALCCLRCGGRGHAATD 59
Query: 265 CRNSYSLDDL-KVCLYFLVQYLAFCI 289
C S++ D+ +V Y ++ C
Sbjct: 60 CARSFAASDVARVACYVCGEFGHLCC 85
>gi|119610730|gb|EAW90324.1| NACHT, leucine rich repeat and PYD (pyrin domain) containing 1,
isoform CRA_d [Homo sapiens]
Length = 1612
Score = 53.9 bits (128), Expect = 9e-05, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 14/106 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKRK----KPCFVCGSLEHGVRQCSKAQD----------CFIC 228
C++C + G +C +A++ + + C+ CGS +H + +C D CF+C
Sbjct: 1471 CFHCRKPGRGIADCPAALENQDMGTRRCYKCGSTDHEITKCKAKVDPPLGECPFAECFVC 1530
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
+ GH ++ CPD K + + C G H C S + D +
Sbjct: 1531 GEMGHLSRSCPDNPKGLYADGSGCQLHGSVEHLKKDCPESENSDRM 1576
Score = 38.9 bits (89), Expect = 2.9, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C+K G DCP ++ + C KCG + H++ C+
Sbjct: 1461 RQGAKKNAMVCFHCRKPGRGIADCPAALENQDMGTRRCYKCGSTDHEITKCK 1512
>gi|112351478|gb|ABI15267.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 413 GKEGHQMKDCTERQANFLGR 432
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|374350353|gb|AEZ35861.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 493
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ QD F+ K
Sbjct: 386 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCNERQDNFLGK 430
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 373 MQRGNFKGQKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 420
>gi|242029064|gb|ACS76562.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|242028355|gb|ACS76213.1| gag protein [Human immunodeficiency virus 1]
Length = 465
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG EH ++ C++ Q F+ K
Sbjct: 371 CFNCGKEGHIARNCRAP--RKKGCWKCGKEEHQMKDCTERQANFLGK 415
>gi|259124688|gb|ACV93473.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V+ ++NI++ R RG + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 363 EAMSQVQNTNNIMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 412
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 413 CGKEGHQMKDCTERQANFLGK 433
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 376 MQRGNFRGQKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 423
>gi|259124097|gb|ACV93373.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHPNIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + + P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKAGVLAEAMSQVQHPNIM---MQKGNFRGPKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|56609271|gb|AAW03229.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 413 GKEGHQMKDCTERQANFLGR 432
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|242029056|gb|ACS76558.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|259129283|gb|ACV95297.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ +V R RG + C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQANIMVQRGNFRGQKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQIKDCTERQANFLGK 434
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQQANIM--VQRGNFRGQKRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH + C
Sbjct: 407 RKKG------CWKCGKEGHQIKDC 424
>gi|310796854|gb|EFQ32315.1| zinc knuckle [Glomerella graminicola M1.001]
Length = 182
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 11/75 (14%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-----------AQD 224
P+RG CYNCG EGHM+ +C K K C+ CG H R C + + +
Sbjct: 18 PNRGAAKCYNCGNEGHMSRDCPEGPKDTKSCYRCGQAGHISRDCPQGGNVGGGGGPSSSE 77
Query: 225 CFICKKGGHRAKDCP 239
C+ C + GH A++CP
Sbjct: 78 CYKCGEVGHVARNCP 92
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 25/107 (23%)
Query: 183 CYNCGEEGHMAVNCRSAVK----------------------RKKPCFVCGSLEHGVRQCS 220
CY CGE GH+A NC + +K C+ CG H R C+
Sbjct: 78 CYKCGEVGHVARNCPKSGGGYGGGQGGYGGGYGGGGGYGGASQKTCYSCGGYGHMSRDCT 137
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C+ C + GH ++DCP + G ++C KC GH C N
Sbjct: 138 NGSKCYNCGENGHFSRDCPKESSGG---EKICYKCQQPGHVQSQCPN 181
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRA 235
+TCY+CG GHM+ +C + K C+ CG H R C K C+ C++ GH
Sbjct: 121 KTCYSCGGYGHMSRDCTNGSK----CYNCGENGHFSRDCPKESSGGEKICYKCQQPGHVQ 176
Query: 236 KDCPD 240
CP+
Sbjct: 177 SQCPN 181
>gi|242029060|gb|ACS76560.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|259129312|gb|ACV95310.1| gag protein [Human immunodeficiency virus 1]
gi|259129344|gb|ACV95321.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHTNIMMQRSNFRGQRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GREGHQMKDCTERQANFLGK 434
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGREGHQMKDC 424
>gi|56609301|gb|AAW03256.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 413 GKEGHQMKDCTERQANFLGR 432
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|371559474|gb|AEX36656.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GREGHQMKDCTERQANFLGR 434
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGREGHQMKDC 424
>gi|271278073|emb|CBI69646.1| gag polyprotein [HIV-1 M:B 2001_KC134]
Length = 497
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ QD F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQDNFLGK 436
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKR-KKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A A+ + P + ++ G R K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNPATIM--IQKGNFRNQRKTVKCFNCGKEGHIAKNCRA 407
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 PRKKG------CWKCGKEGHQMKDC 426
>gi|270016036|gb|EFA12484.1| hypothetical protein TcasGA2_TC001508 [Tribolium castaneum]
Length = 1171
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAK 236
CY C E GHMA C+ V R K C CG H V+ C K C +C GHRAK
Sbjct: 111 CYRCWEPGHMAARCQ-GVDRSKLCHRCGEEGHSVKTCEKEMFCPVCGVRGHRAK 163
>gi|259124674|gb|ACV93468.1| gag protein, partial [Human immunodeficiency virus 1]
gi|259124684|gb|ACV93472.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 495
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V+ ++NI++ R RG + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 362 EAMSQVQNTNNIMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 411
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 412 CGKEGHQMKDCTERQANFLGK 432
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 375 MQRGNFRGQKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|55139287|gb|AAV41308.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSNVNNANIMMQRSNFKGPRRI-------VKCFNCGKEGHIARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 37.7 bits (86), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|429249176|gb|AFZ77632.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ R+K C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHLARNCRAP--RRKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKAKVLAEAMSHAQQTNIM--MQKGIFKGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
+ G C KCG GH M C
Sbjct: 407 RRKG------CWKCGKEGHQMKDC 424
>gi|31980426|dbj|BAC77746.1| Gag polyprotein [Human immunodeficiency virus 1]
gi|31980436|dbj|BAC77755.1| Gag polyprotein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +RG + C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHTNIMMQRGSIRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHTNIM--MQRGSIRGQKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|396477991|ref|XP_003840426.1| similar to zinc knuckle domain-containing protein [Leptosphaeria
maculans JN3]
gi|312216998|emb|CBX96947.1| similar to zinc knuckle domain-containing protein [Leptosphaeria
maculans JN3]
Length = 196
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 29/112 (25%)
Query: 181 QTCYNCGEEGHMAVNC-------------------------RSAVKRKKPCFVCGSLEHG 215
Q CY CG++GH+A NC R+ C+ CG H
Sbjct: 89 QECYKCGQQGHIARNCSQGGGYGGQQQGGYGGRGGYGGGQGGYGGARQTTCYSCGGFGHM 148
Query: 216 VRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
R C++ Q C+ C + GH ++DCP + S +VC +C GH +C N
Sbjct: 149 SRDCTQGQKCYNCGEVGHLSRDCPQETSS----ERVCYRCKQPGHVQSACPN 196
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 15/82 (18%)
Query: 171 RYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK--------- 221
R + P +G TCYNCGE+GH++ C S + +K C+ CG H R+C+K
Sbjct: 24 RAAECPTKGTPTCYNCGEKGHVSRECTSP-QAEKTCYRCGGTGHISRECTKDGGAQMGGR 82
Query: 222 -----AQDCFICKKGGHRAKDC 238
Q+C+ C + GH A++C
Sbjct: 83 GGGSGGQECYKCGQQGHIARNC 104
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 11/99 (11%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ---DCFICKKGG 232
P G + CYNCG+ H A C K C+ CG H R+C+ Q C+ C G
Sbjct: 8 PAAGGRGCYNCGDNSHRAAEC--PTKGTPTCYNCGEKGHVSRECTSPQAEKTCYRCGGTG 65
Query: 233 HRAKDCP------DKHKSGFQNAQVCLKCGDSGHDMFSC 265
H +++C + G Q C KCG GH +C
Sbjct: 66 HISRECTKDGGAQMGGRGGGSGGQECYKCGQQGHIARNC 104
>gi|242029036|gb|ACS76548.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 279 CFNCGKEGHIARNCRAPRKKG------CWKCGREGHQMKDC 313
>gi|242029032|gb|ACS76546.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
Score = 37.4 bits (85), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 279 CFNCGKEGHIARNCRAPRKKG------CWKCGREGHQMKDC 313
>gi|242027897|gb|ACS75984.1| gag protein [Human immunodeficiency virus 1]
Length = 453
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 345 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 395
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 396 GREGHQMKDCTERQANFLGK 415
Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 371 CFNCGKEGHIARNCRAPRKKG------CWKCGREGHQMKDC 405
>gi|6815637|gb|AAF28587.1|AF184455_1 gag protein [Human immunodeficiency virus 1]
Length = 183
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 112 EAMSQVQHTNIMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 161
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H +++C++ Q F+
Sbjct: 162 GKEGHQMKECTERQANFL 179
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 96 ACQGVGGPGHKARVLAEAMSQVQHTNI--MMQRGNFRGPKRIKCFNCGKEGHLARNCRAP 153
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 154 RKKG------CWKCGKEGHQMKEC 171
>gi|409181510|gb|AFV26741.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWRC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 411 GKEGHQMKDCTERQANFLGR 430
>gi|242029034|gb|ACS76547.1| gag protein [Human immunodeficiency virus 1]
Length = 361
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 253 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 303
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 304 GREGHQMKDCTERQANFLGK 323
>gi|242027899|gb|ACS75985.1| gag protein [Human immunodeficiency virus 1]
Length = 453
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 345 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 395
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 396 GREGHQMKDCTERQANFLGK 415
Score = 37.4 bits (85), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 371 CFNCGKEGHIARNCRAPRKKG------CWKCGREGHQMKDC 405
>gi|259127116|gb|ACV94427.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + ++ G + + CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|259124693|gb|ACV93475.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 495
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V+ ++NI++ R RG + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 362 EAMSQVQNTNNIMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 411
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 412 CGKEGHQMKDCTERQANFLGK 432
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 375 MQRGNFRGQKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|396075540|gb|AFN81261.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ S ++ R RG R C+NCG+EGH+A NC++ RK+ C+ C
Sbjct: 362 EAMSQVQQSSIMMQRGNFRGQRTIK--------CFNCGKEGHLARNCKAP--RKRGCWKC 411
Query: 210 GSLEHGVRQCSKAQDCFICKKGGHRAK 236
G H ++ C++ Q F+ K H+ +
Sbjct: 412 GKEGHQMKDCTERQANFLGKIWPHKGR 438
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + + CF C K GH A++C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQVQQSSIM--MQRGNFRGQRTIKCFNCGKEGHLARNCKAP 403
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 RKRG------CWKCGKEGHQMKDC 421
>gi|334884454|gb|AEH21338.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 494
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQAQHANIMMQRXNFKGPRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 411 GKEGHQMKDCTERQANFLGR 430
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 386 CFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKDC 420
>gi|320032219|gb|EFW14174.1| zinc knuckle transcription factor [Coccidioides posadasii str.
Silveira]
Length = 453
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
C+NCG+ GH + C K CF CG H +C + C IC+ GH A +
Sbjct: 51 ACHNCGQPGHFSRECPEPRKASGACFNCGEEGHNKAECPNPRVFKGTCRICQAEGHPAFE 110
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
CPDK VC C GH C + D
Sbjct: 111 CPDK------GPDVCKNCKGEGHKTKDCTENRKFD 139
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-KAQD-CFICKKGGH 233
P + C+NCGEEGH C + K C +C + H +C K D C CK GH
Sbjct: 68 PRKASGACFNCGEEGHNKAECPNPRVFKGTCRICQAEGHPAFECPDKGPDVCKNCKGEGH 127
Query: 234 RAKDCPDKHK 243
+ KDC + K
Sbjct: 128 KTKDCTENRK 137
>gi|259127096|gb|ACV94419.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + ++ G + + CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|259127085|gb|ACV94416.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + ++ G + + CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|425768609|gb|EKV07127.1| Zinc knuckle transcription factor (CnjB), putative [Penicillium
digitatum PHI26]
gi|425776034|gb|EKV14272.1| Zinc knuckle transcription factor (CnjB), putative [Penicillium
digitatum Pd1]
Length = 414
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Query: 169 GPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----D 224
G RY + G YN G+EGH C + ++ CF CG H +C +
Sbjct: 19 GGRYGENAGGGNSAYYNRGQEGHSKTEC-TVPRKMGACFNCGQEGHSKAECPNLRVFKGT 77
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
C IC+K GH A DCP++ VC C GH C+ + D
Sbjct: 78 CRICEKEGHPAVDCPER------PPDVCKNCQAQGHKTMECKENRKFD 119
>gi|371559524|gb|AEX36701.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNTXIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQNTXIM--MQKSNFRGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|2570320|gb|AAC97580.1| gag polyprotein [Human immunodeficiency virus 1]
Length = 497
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
F P RG + C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 384 FKGPRRGIK-CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 437
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 393 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 427
>gi|6651471|gb|AAF22319.1|AF193276_1 gag polyprotein [HIV-1 CRF03_AB]
Length = 498
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|259124678|gb|ACV93470.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 495
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V+ ++NI++ R RG + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 362 EAMSQVQNTNNIMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 411
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 412 CGKEGHQMKDCTERQANFLGK 432
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 375 MQRGNFRGQKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|322710312|gb|EFZ01887.1| zinc knuckle domain protein [Metarhizium anisopliae ARSEF 23]
Length = 182
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Query: 183 CYNCGEEGHMAVNCR--------------SAVKRKKPCFVCGSLEHGVRQCSKAQDCFIC 228
CY CGE GH+A NC K C+ CG H R+C C+ C
Sbjct: 87 CYKCGEIGHIARNCSKAGGSYGGSFGGGYGGGGAGKTCYSCGGYGHMSRECVNGMKCYNC 146
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ GH ++DCP + G ++C KC +GH +C N
Sbjct: 147 GESGHYSRDCPKESSGG---EKICYKCQQAGHVQSACPN 182
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC----------SKAQ 223
D P +G CYNCG EGHM+ +C +K K C+ CG H R+C +++
Sbjct: 26 DCPSKGPAKCYNCGGEGHMSRDCSEPMKENKSCYKCGQPGHISRECPLGGAGGAGGAQST 85
Query: 224 DCFICKKGGHRAKDC 238
+C+ C + GH A++C
Sbjct: 86 ECYKCGEIGHIARNC 100
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----QDCFICKKGGHRAKD 237
CY+CG GH A +C S K C+ CG H R CS+ + C+ C + GH +++
Sbjct: 13 ACYSCGNPGHQARDCPSKGPAK--CYNCGGEGHMSRDCSEPMKENKSCYKCGQPGHISRE 70
Query: 238 CPDKHKSGFQNAQV--CLKCGDSGHDMFSC 265
CP G AQ C KCG+ GH +C
Sbjct: 71 CPLGGAGGAGGAQSTECYKCGEIGHIARNC 100
>gi|242029040|gb|ACS76550.1| gag protein [Human immunodeficiency virus 1]
Length = 358
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 250 EAMSQVNSTNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 300
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 301 GREGHQMKDCTERQANFLGK 320
>gi|3132801|gb|AAC29068.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ S+ ++ R RG R C+NCG+EGH+A NC++ RKK C+ C
Sbjct: 362 EAMSQVQQSNIMMQRGNFRGQRTIK--------CFNCGKEGHLARNCKAP--RKKGCWKC 411
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 412 GKEGHQMKDCTEGQANFLGK 431
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + + CF C K GH A++C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQVQQSNIM--MQRGNFRGQRTIKCFNCGKEGHLARNCKAP 403
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 RKKG------CWKCGKEGHQMKDC 421
>gi|300720651|gb|ADK33406.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSNVNNANIMMQRSNFKGPRRI-------VKCFNCGKEGHIARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 37.4 bits (85), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|259124667|gb|ACV93467.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V+ ++NI++ R RG + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 363 EAMSQVQNTNNIMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWK 412
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 413 CGKEGHQMKDCTERQANFLGK 433
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 376 MQRGNFRGQKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 423
>gi|194500415|gb|ACF75456.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 424 CTERQANFLGK 434
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQAQKTNIM--MQKGNFRGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|4324846|gb|AAD17110.1| gag polyprotein [Human immunodeficiency virus 1]
Length = 494
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 161 IVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS 220
++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++ CS
Sbjct: 374 MMQRGNFKGPRKIP-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCS 424
Query: 221 KAQDCFICK 229
+ Q F+ K
Sbjct: 425 EGQANFLGK 433
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K CF C K GH A++C K G C KCG GH M C
Sbjct: 385 KIPKCFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 423
>gi|428175040|gb|EKX43932.1| hypothetical protein GUITHDRAFT_72698, partial [Guillardia theta
CCMP2712]
Length = 68
Score = 53.9 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDC 238
TC +CG GH A +C + K KPCF+CG H R C Q CF C+K GHR +C
Sbjct: 2 TCRHCGGIGHFARDCVNE-KIPKPCFLCGIKGHNARDCEN-QQCFKCRKPGHRISEC 56
>gi|195954537|gb|ACG58961.1| gag protein [Human immunodeficiency virus 1]
gi|238734305|gb|ACR55525.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|255739647|gb|ACU31761.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 11/73 (15%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S+NI++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SNNIMMQRSNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQM 418
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 419 KDCTERQANFLGK 431
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 421
>gi|213138166|gb|ACJ44754.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSNVNNANIMMQRSNFKGPRRI-------VKCFNCGKEGHIARNCRAP--RKKGCWKC 411
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 412 GKEGHQMKDCTERQANFLGK 431
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 421
>gi|195954500|gb|ACG58943.1| gag protein [Human immunodeficiency virus 1]
gi|238733837|gb|ACR55113.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S NI++ R RG + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMSQVTTSTNIMMQRGNFRGQKNIK--------CFNCGKEGHLARNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 415 CGKEGHQMKDCTERQANFLGK 435
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 35/88 (39%), Gaps = 15/88 (17%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGS----LEHGVRQCSKAQDCFICKKGGHRAKD 237
C G GH A A+ + V S ++ G + K CF C K GH A++
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQ-----VTTSTNIMMQRGNFRGQKNIKCFNCGKEGHLARN 403
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C K G C KCG GH M C
Sbjct: 404 CRAPRKKG------CWKCGKEGHQMKDC 425
>gi|56608671|gb|AAW02969.1| gag protein [Human immunodeficiency virus 1]
gi|213137147|gb|ACJ44258.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K +GPR C+NCG EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 STNIMMQKSNFKGPRRIV-------KCFNCGREGHIARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
>gi|300720186|gb|ADK33096.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V + ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQVNHPNIMMQRNNFKGPRRI-------VKCFNCGKEGHIAXNCRAP--RKKGCWKC 413
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 414 GKEGHQMKDCTERQANFLGK 433
>gi|255739237|gb|ACU31556.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 14/88 (15%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ D ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQANKVDXMMQRSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK-----KGG 232
G H ++ C++ Q F+ K KGG
Sbjct: 413 GKEGHQMKDCTERQANFLGKVWPSLKGG 440
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|227057940|gb|ACP18932.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 STNIMMQRSNFKGPRRII-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|242030235|gb|ACS77131.1| gag protein [Human immunodeficiency virus 1]
Length = 460
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ I++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 345 EAMSQATIANIMMQRVNFKGPRRTI-------KCFNCGKEGHLARNCRAP--RKKGCWKC 395
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 396 GQEGHQMKDCTERQANFLGK 415
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 371 CFNCGKEGHLARNCRAPRKKG------CWKCGQEGHQMKDC 405
>gi|259128114|gb|ACV94816.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RG + C+NCGEEGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHTNILMQRGNFRGQKRIK--------CFNCGEEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C + GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHTNIL--MQRGNFRGQKRIKCFNCGEEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|212538011|ref|XP_002149161.1| zinc knuckle domain protein (Byr3), putative [Talaromyces marneffei
ATCC 18224]
gi|210068903|gb|EEA22994.1| zinc knuckle domain protein (Byr3), putative [Talaromyces marneffei
ATCC 18224]
Length = 183
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 181 QTCYNCGEEGHMAVNC----------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKK 230
Q CY CG+ GH+A NC R++ C+ CG H R C++ Q C+ C +
Sbjct: 91 QECYKCGQVGHIARNCSQGGSYGGGHGGFGGRQQTCYSCGGYGHMARDCTQGQKCYNCGE 150
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH ++DC + +VC KC GH +C N
Sbjct: 151 VGHVSRDCTTE----ANGERVCYKCKQPGHVQSACPN 183
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 20/104 (19%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKA---QDCFICKKGGHR 234
G + C+NCGE H A +C K+ P C+ CG H R+C++A + C+ C + GH
Sbjct: 6 GSRGCFNCGEPSHQARDC---PKKGTPTCYNCGGQGHVSRECTQAPKEKSCYRCGQTGHI 62
Query: 235 AKDCPDKHKSGFQN-------------AQVCLKCGDSGHDMFSC 265
++DC +G N Q C KCG GH +C
Sbjct: 63 SRDCQQSAPAGGNNGGFSRGGFSGGAGGQECYKCGQVGHIARNC 106
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 28/114 (24%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C A K K C+ CG H R C ++
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSRECTQAPKEKS-CYRCGQTGHISRDCQQSAPAGGNNGGFS 80
Query: 223 ----------QDCFICKKGGHRAKDCPDKHKSGFQNA------QVCLKCGDSGH 260
Q+C+ C + GH A++C G + Q C CG GH
Sbjct: 81 RGGFSGGAGGQECYKCGQVGHIARNCSQGGSYGGGHGGFGGRQQTCYSCGGYGH 134
>gi|386306656|gb|AFJ05312.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 496
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R+C++ Q F+ K
Sbjct: 388 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMRECTERQANFLGK 432
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMREC 422
>gi|357444017|ref|XP_003592286.1| Zinc finger CCHC domain-containing protein [Medicago truncatula]
gi|355481334|gb|AES62537.1| Zinc finger CCHC domain-containing protein [Medicago truncatula]
Length = 262
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 50/108 (46%), Gaps = 16/108 (14%)
Query: 159 DNIVLRKLLRGPRYFDPPDRG----WQTCYNCGEEGHMAVNCRSAVKRK----KPCFVCG 210
+ I LR RG R + PD G ++ CYNCG+ GH NC ++ CFVC
Sbjct: 91 NKICLRCRRRGHRAQNCPDGGSKEDFKYCYNCGDNGHSLANCPHPLQEGGTMFAQCFVCK 150
Query: 211 SLEHGVRQCSKAQD--------CFICKKGGHRAKDCPDKHKSGFQNAQ 250
H + C K C IC H A+DCPDK ++GF + +
Sbjct: 151 EQGHLSKNCPKNAHGIYPKGGCCKICGGVTHLARDCPDKGQNGFGDGR 198
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
Query: 206 CFVCGSLEHGVRQCSKAQD------CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C L+H + C++ + C C++ GHRA++CPD ++ + C CGD+G
Sbjct: 69 CFICKGLDHIAKFCTQKAEWEKNKICLRCRRRGHRAQNCPDGGSK--EDFKYCYNCGDNG 126
Query: 260 HDMFSC 265
H + +C
Sbjct: 127 HSLANC 132
>gi|320410166|gb|ADW26871.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V S NI+++ RG F P R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVTNSANIMMQ---RG--NFRP-QRKXVKCFNCGKEGHIAKNCRAP--RKKGCWKC 416
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 417 GKEGHQIKDCTERQANFLGK 436
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSANIMMQRGNFRPQRKXVKCFNCGKEGHIAKNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH + C
Sbjct: 410 KKG------CWKCGKEGHQIKDC 426
>gi|213138293|gb|ACJ44810.1| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 156 EISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEH 214
+ + NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H
Sbjct: 366 QANSNIMMQKSNFKGPRRII-------KCFNCGKEGHLAKNCRAP--RKKGCWKCGKEGH 416
Query: 215 GVRQCSKAQDCFICK 229
++ C++ Q F+ K
Sbjct: 417 QMKDCTERQANFLGK 431
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 10/84 (11%)
Query: 183 CYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A V + + + S G R+ K CF C K GH AK+C
Sbjct: 347 CQGVGGPGHKARVLAEAMSQANSNIMMQKSNFKGPRRIIK---CFNCGKEGHLAKNCRAP 403
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 RKKG------CWKCGKEGHQMKDC 421
>gi|164606176|gb|ABY62237.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R ++GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVTNTNIMMQRGNIKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 183 CYNCGEEGHMA---VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
C G GH A S V G+++ G R+ K CF C K GH A++C
Sbjct: 347 CQGVGGPGHKARVLAEAMSQVTNTNIMMQRGNIK-GPRRIVK---CFNCGKEGHIARNCR 402
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 APRKKG------CWKCGKEGHQMKDC 422
>gi|242027589|gb|ACS75831.1| gag protein [Human immunodeficiency virus 1]
Length = 464
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 10/71 (14%)
Query: 160 NIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI++ R +GPR C+NCGEEGH+A NCR+ RKK C+ CG H ++
Sbjct: 359 NILMQRSNFKGPRRI-------VKCFNCGEEGHIARNCRAP--RKKGCWKCGKEGHQMKD 409
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 410 CTERQANFLGK 420
>gi|222428364|gb|ACM50021.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++CS+ Q F+ K
Sbjct: 393 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECSERQANFLGK 437
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K CF C K GH A++C K G C KCG GH M C
Sbjct: 389 KPIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 427
>gi|117581800|gb|ABK41331.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQSTNIMMQRGNFKGPKRVK--------CFNCGKEGHIARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G+ H ++ C++ Q F+ K
Sbjct: 415 GNEGHQMKDCTERQANFLGK 434
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG+ GH M C
Sbjct: 377 MQRGNFKGPKRVKCFNCGKEGHIARNCRAPRKKG------CWKCGNEGHQMKDC 424
>gi|282598032|gb|ADA83277.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ S ++ R RG R C+NCG+EGH+A NC++ RKK C+ C
Sbjct: 360 EAMSQVQQSSTMMQRGNFRGQRTIK--------CFNCGKEGHLARNCKAP--RKKGCWKC 409
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 410 GKEGHQMKDCTERQANFLGK 429
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + ++ G + + CF C K GH A++C
Sbjct: 344 ACQGVGGPGHKARVLAEAMSQVQQSSTM--MQRGNFRGQRTIKCFNCGKEGHLARNCKAP 401
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 402 RKKG------CWKCGKEGHQMKDC 419
>gi|255739565|gb|ACU31720.1| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 367 SSNIMMQRSNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQM 417
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 418 KDCTERQANFLGK 430
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 32/83 (38%), Gaps = 9/83 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + S G R+ K CF C K GH AK+C
Sbjct: 347 CQGVGGPSHKARVLAEAMSHSSNIMMQRSNFKGPRRIVK---CFNCGKEGHIAKNCRAPR 403
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 KKG------CWKCGKEGHQMKDC 420
>gi|119361874|gb|ABL66879.1| gag protein [Human immunodeficiency virus 1]
Length = 369
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGP+ C+NCG+EGH+A NCR+ RKK C+ CG+ H ++
Sbjct: 245 NIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGNEGHQMKD 294
Query: 219 CSKAQDCFICK 229
C++ Q F+ +
Sbjct: 295 CTERQTNFLGR 305
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ + K CF C K GH A++C
Sbjct: 220 ACQGVGGPGHKARVLAEAMSQMQNANIM--MQKSNFRGPKRIKCFNCGKEGHLARNCRAP 277
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG+ GH M C
Sbjct: 278 RKKG------CWKCGNEGHQMKDC 295
>gi|407038564|gb|EKE39189.1| zinc knuckle domain containing protein [Entamoeba nuttalli P19]
Length = 400
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 203 KKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+K CF CG H R CS+ D CF C K GH K+CP++ + C KCG GH
Sbjct: 309 QKVCFKCGKPGHIGRDCSQPDDKVCFYCGKPGHIGKNCPEQEVPESSDQATCYKCGQVGH 368
Query: 261 DMFSC 265
C
Sbjct: 369 KSMDC 373
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ--------DCFICKKGG 232
+ C+ CG+ GH+ +C K CF CG H + C + + C+ C + G
Sbjct: 310 KVCFKCGKPGHIGRDCSQP--DDKVCFYCGKPGHIGKNCPEQEVPESSDQATCYKCGQVG 367
Query: 233 HRAKDCPDKHKSGFQ 247
H++ DCP+ + GF+
Sbjct: 368 HKSMDCPENTEGGFK 382
>gi|326417125|gb|ADZ73404.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF---ICKKGGHRAKDCP 239
C+NCG+EGH+A NCR+ RKK C+ CG H ++ CS+ Q F IC+ R + P
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCSERQGNFLGKICRSNKGRPGNFP 447
Query: 240 D 240
Sbjct: 448 Q 448
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQNVNIM--MQRGNFKGQKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|164606174|gb|ABY62236.1| gag protein [Human immunodeficiency virus 1]
gi|283444833|gb|ADB20307.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R ++GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVTNTNIMMQRGNIKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 183 CYNCGEEGHMA---VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
C G GH A S V G+++ G R+ K CF C K GH A++C
Sbjct: 347 CQGVGGPGHKARVLAEAMSQVTNTNIMMQRGNIK-GPRRIVK---CFNCGKEGHIARNCR 402
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 APRKKG------CWKCGKEGHQMKDC 422
>gi|119361974|gb|ABL66945.1| gag protein [Human immunodeficiency virus 1]
Length = 474
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 341 EAMSHVQHANVMMQRGNFKGPKRIK--------CFNCGKEGHIAKNCRAP--RKKGCWKC 390
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 391 GKEGHQMKDCTERQANFLGK 410
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + V ++ G + K CF C K GH AK+C
Sbjct: 325 ACQGVGGPGHKARVLAEAMSHVQHANVM--MQRGNFKGPKRIKCFNCGKEGHIAKNCRAP 382
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 383 RKKG------CWKCGKEGHQMKDC 400
>gi|225056148|gb|ACN80880.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S ++++K RGP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 364 EAMSQVTNSATVMMQKSNFRGPKRTV-------KCFNCGKEGHIAKNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H +++C++ Q F+ K
Sbjct: 415 CGKEGHQMKECTERQANFLGK 435
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|164606178|gb|ABY62238.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R ++GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVTNTNIMMQRGNIKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 183 CYNCGEEGHMA---VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
C G GH A S V G+++ G R+ K CF C K GH A++C
Sbjct: 347 CQGVGGPGHKARVLAEAMSQVTNTNIMMQRGNIK-GPRRIVK---CFNCGKEGHIARNCR 402
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 APRKKG------CWKCGKEGHQMKDC 422
>gi|67423403|dbj|BAD99522.1| VASA RNA helicase [Daphnia magna]
Length = 775
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 14/101 (13%)
Query: 181 QTCYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSK--------AQDCFICK 229
+TC+ CGEEGH + C + C CG H R+C + + C C
Sbjct: 192 RTCHKCGEEGHFSRECPQGGGGGGGSRACHKCGEEGHFSRECPQGGGGGGSGPRTCHKCG 251
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYS 270
+ GH ++DCP + G C KC ++GH C N +S
Sbjct: 252 EEGHVSRDCP---QGGGGGDSKCFKCHEAGHTSKDCPNPFS 289
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKR----KKPCFVCGSLEHGVRQCSK-------AQDCFICK 229
+ C+ CGEEGH + C A + C CG H R+C + ++ C C
Sbjct: 165 RACHKCGEEGHFSRECPQAGGGGGSGPRTCHKCGEEGHFSRECPQGGGGGGGSRACHKCG 224
Query: 230 KGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+ GH +++CP G + C KCG+ GH
Sbjct: 225 EEGHFSRECPQGGGGGGSGPRTCHKCGEEGH 255
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 187 GEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFICKKGGHRAKDCP 239
G G N + +PC CG H R+C K ++ C C + GH +++CP
Sbjct: 122 GGWGSSGANGLKSTGGGRPCHKCGEEGHMARECPKGGGGGGGSRACHKCGEEGHFSRECP 181
Query: 240 DKHKSGFQNAQVCLKCGDSGH 260
G + C KCG+ GH
Sbjct: 182 QAGGGGGSGPRTCHKCGEEGH 202
>gi|371559464|gb|AEX36647.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQGANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|225056150|gb|ACN80881.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S ++++K RGP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 364 EAMSQVTNSATVMMQKSNFRGPKRTV-------KCFNCGKEGHIAKNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H +++C++ Q F+ K
Sbjct: 415 CGKEGHQMKECTERQANFLGK 435
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|223951319|gb|ACN29603.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R C++ Q F+ K
Sbjct: 393 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQIRDCTERQANFLGK 437
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A A+ + ++ G R K CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQATNSAAAIMMQKGNFRNQRKPVKCFNCGKEGHIAKNCRA 408
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH + C
Sbjct: 409 PRKKG------CWKCGKEGHQIRDC 427
>gi|126321496|ref|XP_001363296.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Monodelphis domestica]
Length = 262
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CF 226
+ CY+C ++GH +C + ++ + C+ CGS EH + +C D CF
Sbjct: 119 KVCYHCRKQGHGVADCPAVLESQDMGTGICYRCGSTEHEITKCKAKVDPAMGEFPFAKCF 178
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
IC + GH ++ CPD K + C CG H C + + D +
Sbjct: 179 ICGEMGHLSRSCPDNPKGLYAEGGGCRLCGSVEHFKKDCPENQNSDHM 226
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 14/89 (15%)
Query: 170 PRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRK------KPCFVCGSLEHGVRQC---- 219
P + D G CY CG H C++ V CF+CG + H R C
Sbjct: 135 PAVLESQDMGTGICYRCGSTEHEITKCKAKVDPAMGEFPFAKCFICGEMGHLSRSCPDNP 194
Query: 220 ----SKAQDCFICKKGGHRAKDCPDKHKS 244
++ C +C H KDCP+ S
Sbjct: 195 KGLYAEGGGCRLCGSVEHFKKDCPENQNS 223
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 222 AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
A+ C+ C+K GH DCP +S +C +CG + H++ C+
Sbjct: 118 AKVCYHCRKQGHGVADCPAVLESQDMGTGICYRCGSTEHEITKCK 162
>gi|118426894|gb|ABK91198.1| gag protein [Human immunodeficiency virus 1]
Length = 168
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|380489650|emb|CCF36563.1| cellular nucleic acid-binding protein [Colletotrichum higginsianum]
Length = 275
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ------DCFICKKGGHRA 235
TCYNCGEEGH +C + K C CG H V +C + + +C C + GH +
Sbjct: 99 TCYNCGEEGHRVRDCPTPRVDKFACKNCGQSGHKVSECPEPRKAGADVECNKCHEMGHFS 158
Query: 236 KDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+DCP + G + C CG+ GH C
Sbjct: 159 RDCP---QGGGGGGRACHNCGNEGHMSREC 185
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKK----PCFVCGSLEHGVRQCSKAQ-DCFIC 228
+P R Q C NC E GH++ +C K C+ CG H VR C + D F C
Sbjct: 64 EPVSRLMQKCSNCNELGHISKSCPQEAMEKARVTITCYNCGEEGHRVRDCPTPRVDKFAC 123
Query: 229 K---KGGHRAKDCPDKHKSGFQNAQV-CLKCGDSGH 260
K + GH+ +CP+ K+G A V C KC + GH
Sbjct: 124 KNCGQSGHKVSECPEPRKAG---ADVECNKCHEMGH 156
>gi|326654062|gb|AEA02921.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQTQNTNIMMQRNNFKGPRRII-------KCFNCGKEGHLARNCRAP--RKKGCWKC 411
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 412 GKEGHQMKDCTERQANFLGK 431
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 421
>gi|259126517|gb|ACV94229.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTEGQANFLGK 435
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|164606182|gb|ABY62240.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R ++GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVTNTNIMMQRGNIKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 183 CYNCGEEGHMA---VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
C G GH A S V G+++ G R+ K CF C K GH A++C
Sbjct: 347 CQGVGGPGHKARVLAEAMSQVTNTNIMMQRGNIK-GPRRIVK---CFNCGKEGHIARNCR 402
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 APRKKG------CWKCGKEGHQMKDC 422
>gi|37682590|gb|AAQ98271.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + + ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 360 EAMSQTQTNSIMMQRSNFKGPRRMV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 411 GKEGHQMKDCTERQANFLGK 430
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 386 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 420
>gi|378407273|gb|AFB83149.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 345
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 15/81 (18%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
+ NI+++K RGPR P + C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 221 NSNIMMQKSNFRGPRR---PVK----CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQM 271
Query: 217 RQCSKAQDCFICK-----KGG 232
+ C++ Q F+ K KGG
Sbjct: 272 KDCTERQANFLGKIWPSHKGG 292
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 240 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 274
>gi|242027911|gb|ACS75991.1| gag protein [Human immunodeficiency virus 1]
Length = 349
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 241 EAMSQVNSTNIMMQRNNFKGPRKI-------VKCFNCGKEGHIARNCRAP--RKKGCWKC 291
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 292 GREGHQMKDCTERQANFLGK 311
>gi|396075578|gb|AFN81286.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ +V R RG R C+NCG+EGH+A NC++ RKK C+ C
Sbjct: 362 EAMSQVQQTNVMVQRGNFRGQRTIK--------CFNCGKEGHLARNCKAP--RKKGCWKC 411
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +R C++ Q F+ +
Sbjct: 412 GKEGHQMRDCTERQANFLGR 431
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + V ++ G + + CF C K GH A++C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQVQQTNVM--VQRGNFRGQRTIKCFNCGKEGHLARNCKAP 403
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 RKKG------CWKCGKEGHQMRDC 421
>gi|225056160|gb|ACN80885.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S ++++K RGP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 364 EAMSQVTNSATVMMQKSDFRGPKRTV-------KCFNCGKEGHIAKNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H +++C++ Q F+ K
Sbjct: 415 CGKEGHQMKECTERQANFLGK 435
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|73913902|gb|AAZ91872.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQANSTNVLIQRSNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|374429773|gb|AEZ51108.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CGS H ++ C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGSEGHQMKDCTERQANFLGK 435
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHLARNCRAPRKKG------CWKCGSEGHQMKDC 425
>gi|213138034|gb|ACJ44692.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SPNIMMQKSNFKGPRRTI-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|242027909|gb|ACS75990.1| gag protein [Human immunodeficiency virus 1]
Length = 327
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 219 EAMSQVNSTNIMMQRNNFKGPRKI-------VKCFNCGKEGHIARNCRAP--RKKGCWKC 269
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 270 GREGHQMKDCTERQANFLGK 289
>gi|407040390|gb|EKE40104.1| zinc finger protein containing CCHC type domain containing protein
[Entamoeba nuttalli P19]
Length = 164
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKAQD-------CFICKKGG 232
+ C+ C + GH NC K + C+ CGS +H +R C + + CF+C + G
Sbjct: 14 KICFYCRQPGHCLKNCPKKAKGEDSICYNCGSHDHILRDCPEPRTGKLAFSTCFVCHQMG 73
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
H ++DCP+ K + C CGD H C N
Sbjct: 74 HISRDCPNNPKGIYPQGGGCRYCGDVNHFAKDCPN 108
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCS--------KAQDCFICKKG 231
CYNCG H+ +C R+ CFVC + H R C + C C
Sbjct: 40 CYNCGSHDHILRDCPEPRTGKLAFSTCFVCHQMGHISRDCPNNPKGIYPQGGGCRYCGDV 99
Query: 232 GHRAKDCPDKHK 243
H AKDCP+K K
Sbjct: 100 NHFAKDCPNKRK 111
>gi|259125659|gb|ACV93873.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHPNIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLRK 434
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + + P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHPNIM---MQKGNFRGPKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKDC 424
>gi|195954508|gb|ACG58947.1| gag protein [Human immunodeficiency virus 1]
gi|238733932|gb|ACR55196.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNTSIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQNTSIM--MQKSNFRGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|32765868|gb|AAP68999.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H V+
Sbjct: 370 NIMMQKSNFKGPRRTI-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQVKD 420
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 421 CTERQANFLGK 431
>gi|259127091|gb|ACV94417.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + ++ G + + CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSHVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|118426842|gb|ABK91172.1| gag protein [Human immunodeficiency virus 1]
Length = 163
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 14 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 63
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 64 GKEGHQMKDCTERQANFLGK 83
>gi|386307163|gb|AFJ05561.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 491
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ ++ ++ R L+GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQANNANILMQRSNLKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|242027903|gb|ACS75987.1| gag protein [Human immunodeficiency virus 1]
gi|242027905|gb|ACS75988.1| gag protein [Human immunodeficiency virus 1]
gi|242027907|gb|ACS75989.1| gag protein [Human immunodeficiency virus 1]
gi|242027913|gb|ACS75992.1| gag protein [Human immunodeficiency virus 1]
gi|242027915|gb|ACS75993.1| gag protein [Human immunodeficiency virus 1]
gi|242027917|gb|ACS75994.1| gag protein [Human immunodeficiency virus 1]
gi|242027919|gb|ACS75995.1| gag protein [Human immunodeficiency virus 1]
Length = 327
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 219 EAMSQVNSTNIMMQRNNFKGPRKI-------VKCFNCGKEGHIARNCRAP--RKKGCWKC 269
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 270 GREGHQMKDCTERQANFLGK 289
>gi|259124539|gb|ACV93418.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCGEEGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 390 CFNCGEEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 434
>gi|255986740|gb|ACU50752.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R C++ Q F+ K
Sbjct: 392 CFNCGKEGHIAXNCRAP--RKKGCWKCGKEGHQMRDCTERQANFLGK 436
>gi|255739481|gb|ACU31678.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SANILMQRSNFKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|118426904|gb|ABK91203.1| gag protein [Human immunodeficiency virus 1]
Length = 168
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|32766024|gb|AAP69077.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 370 NIMMQKSNFKGPRRTI-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKE 420
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 421 CTERQANFLGK 431
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 421
>gi|195954510|gb|ACG58948.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNASIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQNASIM--MQKSNFRGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|194399868|gb|ACF60846.1| gag protein [Human immunodeficiency virus 1]
Length = 487
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
+ NI+ +K +GPR C+NCG EGH+A NCR+ RKK C+ CG H +
Sbjct: 364 NPNIMFQKNNFKGPRRI-------VKCFNCGREGHIAKNCRAP--RKKGCWKCGKEGHQM 414
Query: 217 RQCSKAQDCFICK 229
++CS+ Q F+ K
Sbjct: 415 KECSERQANFLGK 427
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C + GH AK+C K G C KCG GH M C
Sbjct: 383 CFNCGREGHIAKNCRAPRKKG------CWKCGKEGHQMKEC 417
>gi|118426846|gb|ABK91174.1| gag protein [Human immunodeficiency virus 1]
Length = 168
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|238733941|gb|ACR55204.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNASIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQNASIM--MQKSNFRGPKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|242807741|ref|XP_002485018.1| zinc knuckle domain protein (Byr3), putative [Talaromyces
stipitatus ATCC 10500]
gi|218715643|gb|EED15065.1| zinc knuckle domain protein (Byr3), putative [Talaromyces
stipitatus ATCC 10500]
Length = 181
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 14/97 (14%)
Query: 181 QTCYNCGEEGHMAVNC----------RSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKK 230
Q CY CG+ GH+A NC R++ C+ CG H R C++ Q C+ C +
Sbjct: 89 QECYKCGQVGHIARNCSQGGGYGGGHGGFGGRQQTCYSCGGYGHMARDCTQGQKCYNCGE 148
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
GH ++DC + +VC KC GH +C N
Sbjct: 149 VGHVSRDCTTE----GNGERVCYKCKQPGHVQSACPN 181
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 26/112 (23%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA----------- 222
D P +G TCYNCG +GH++ C A K K C+ CG H R C ++
Sbjct: 22 DCPKKGTPTCYNCGGQGHVSRECTQAPKEKS-CYRCGQTGHISRDCQQSGPANNGGNYRG 80
Query: 223 --------QDCFICKKGGHRAKDCPDKHKSGFQNA------QVCLKCGDSGH 260
Q+C+ C + GH A++C G + Q C CG GH
Sbjct: 81 GFSGGSGGQECYKCGQVGHIARNCSQGGGYGGGHGGFGGRQQTCYSCGGYGH 132
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 18/102 (17%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKA---QDCFICKKGGHR 234
G + C+NCGE H A +C K+ P C+ CG H R+C++A + C+ C + GH
Sbjct: 6 GSRGCFNCGEPSHQARDC---PKKGTPTCYNCGGQGHVSRECTQAPKEKSCYRCGQTGHI 62
Query: 235 AKDC----PDKHKSGFQ-------NAQVCLKCGDSGHDMFSC 265
++DC P + ++ Q C KCG GH +C
Sbjct: 63 SRDCQQSGPANNGGNYRGGFSGGSGGQECYKCGQVGHIARNC 104
>gi|55560855|gb|AAV53292.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S I+++K RG R C+NCGEEGH+A NCR+ RK+ C+
Sbjct: 365 EAMSQVTNSPTIMMQKGNFRGQRKIK--------CFNCGEEGHLAKNCRAP--RKRGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 415 CGKEGHQMKDCTERQANFLGK 435
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKR--KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A A+ + P + ++ G + + CF C + GH AK+C
Sbjct: 350 CQGVGGPGHKARILAEAMSQVTNSPTIM---MQKGNFRGQRKIKCFNCGEEGHLAKNCRA 406
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 PRKRG------CWKCGKEGHQMKDC 425
>gi|213137675|gb|ACJ44518.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 156 EISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEH 214
+ ++NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H
Sbjct: 366 QTNNNIMMQRSNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGQEGH 416
Query: 215 GVRQCSKAQDCFICK 229
++ C++ Q F+ K
Sbjct: 417 QMKDCTERQANFLGK 431
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIARNCRAPRKKG------CWKCGQEGHQMKDC 421
>gi|33088446|gb|AAP93265.1| gag protein [Human immunodeficiency virus 1]
Length = 157
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 24 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 73
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 74 GKEGHQMKDCTERQANFLGK 93
>gi|71747588|ref|XP_822849.1| universal minicircle sequence binding protein (UMSBP) [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|70832517|gb|EAN78021.1| universal minicircle sequence binding protein (UMSBP), putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|261332660|emb|CBH15655.1| predicted zinc finger protein [Trypanosoma brucei gambiense DAL972]
Length = 140
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%), Gaps = 15/103 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSA-----VKRKKPCFVCGSLEHGVRQCSKA---------QDCF 226
+TCYNCG+ GHM+ C +A + + C+ CG +H R C A + C+
Sbjct: 11 RTCYNCGQPGHMSRECPNARSGGNMGGGRSCYNCGQPDHISRDCPNARTGGNMGGGRSCY 70
Query: 227 ICKKGGHRAKDCPDKHKSG-FQNAQVCLKCGDSGHDMFSCRNS 268
C + GH ++DCP+ G + C C GH C N+
Sbjct: 71 NCGRPGHISRDCPNARSGGNMGGGRACYHCQQEGHIARECPNA 113
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 179 GWQTCYNCGEEGHMAVNCRSA-----VKRKKPCFVCGSLEHGVRQCSKAQD--------- 224
G ++CYNCG+ H++ +C +A + + C+ CG H R C A+
Sbjct: 37 GGRSCYNCGQPDHISRDCPNARTGGNMGGGRSCYNCGRPGHISRDCPNARSGGNMGGGRA 96
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C+ C++ GH A++CP+ + C CG GH +C
Sbjct: 97 CYHCQQEGHIARECPNAPADAAAGGRACFNCGQPGHLSRAC 137
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 179 GWQTCYNCGEEGHMAVNCRSA-----VKRKKPCFVCGSLEHGVRQCSKA--------QDC 225
G ++CYNCG GH++ +C +A + + C+ C H R+C A + C
Sbjct: 65 GGRSCYNCGRPGHISRDCPNARSGGNMGGGRACYHCQQEGHIARECPNAPADAAAGGRAC 124
Query: 226 FICKKGGHRAKDCPDK 241
F C + GH ++ CP K
Sbjct: 125 FNCGQPGHLSRACPVK 140
>gi|59895756|gb|AAX11264.1| Gag [Expression vector pRT105]
gi|59895758|gb|AAX11265.1| Gag [Expression vector pRT106]
gi|59895760|gb|AAX11266.1| Gag [Expression vector pRT107]
gi|59895762|gb|AAX11267.1| Gag [Expression vector pRT108]
Length = 492
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SGNIMMQRSNFKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|300719973|gb|ADK32954.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K R K P
Sbjct: 387 CFNCGKEGHIAKNCRAP--RKKGCWKCGQEGHQMKDCTERQANFLGKIWPSRXKGRP 441
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIAKNCRAPRKKG------CWKCGQEGHQMKDC 421
>gi|259127100|gb|ACV94421.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + ++ G + + CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSHVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|255739307|gb|ACU31591.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 158 SDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVR 217
S+ +V R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 369 SNILVQRSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMK 419
Query: 218 QCSKAQDCFICK 229
C++ Q F+ K
Sbjct: 420 DCTERQANFLGK 431
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + V S G R+ K CF C K GH AK+C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQANSNILVQRSNFKGPRRIVK---CFNCGKEGHIAKNCRA 402
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 PRKKG------CWKCGKEGHQMKDC 421
>gi|118426862|gb|ABK91182.1| gag protein [Human immunodeficiency virus 1]
Length = 168
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|118426828|gb|ABK91165.1| gag protein [Human immunodeficiency virus 1]
Length = 150
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 10/82 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICKKG 231
G H ++ C++ Q F+ K G
Sbjct: 69 GKEGHQMKDCTERQANFLGKFG 90
>gi|32766030|gb|AAP69080.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 370 NIMMQKSNFKGPRRTI-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKE 420
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 421 CTERQANFLGK 431
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 421
>gi|259127104|gb|ACV94423.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + ++ G + + CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSHVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|259127098|gb|ACV94420.1| gag protein [Human immunodeficiency virus 1]
gi|259127124|gb|ACV94429.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + ++ G + + CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSHVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|403264382|ref|XP_003924463.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Saimiri boliviensis boliviensis]
Length = 272
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 130 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 189
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
C + GH ++ CPD K + + C CG H C S + D +
Sbjct: 190 CGEMGHPSRACPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSDRM 236
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+
Sbjct: 121 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCK 172
>gi|366986513|ref|XP_003673023.1| hypothetical protein NCAS_0A00720 [Naumovozyma castellii CBS 4309]
gi|342298886|emb|CCC66632.1| hypothetical protein NCAS_0A00720 [Naumovozyma castellii CBS 4309]
Length = 161
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 20/102 (19%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP--------------CFVCGSLEHGVRQCSKAQD-C 225
Q CYNC + GH++ +C K ++P C+ CG H + C +++ C
Sbjct: 65 QRCYNCNQTGHISKDCPEPRKPREPRNNGRFGANRHGMTCYKCGEPNHMAKDCPQSESKC 124
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ C K GH ++DCPD K +VC C ++GH C N
Sbjct: 125 YSCGKFGHMSRDCPDGPKE-----KVCYNCNETGHISRDCPN 161
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC---SKAQDCFICKKGGH 233
+R TCY CGE HMA +C + + C+ CG H R C K + C+ C + GH
Sbjct: 98 NRHGMTCYKCGEPNHMAKDCPQSESK---CYSCGKFGHMSRDCPDGPKEKVCYNCNETGH 154
Query: 234 RAKDCPD 240
++DCP+
Sbjct: 155 ISRDCPN 161
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 203 KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD----KHKSGFQNAQVCLKCGDS 258
+K CFVCG + H C + C+ C K GH +CP+ +HK C CG++
Sbjct: 3 QKACFVCGKIGHLAEDCDSEKLCYNCNKPGHVQSECPEPRTVEHKQ-------CYNCGET 55
Query: 259 GH 260
GH
Sbjct: 56 GH 57
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 33/121 (27%)
Query: 181 QTCYNCGEEGHMAVNCRS---------------------AVKRKKPCFVCGSLEHGVRQC 219
+ C+ CG+ GH+A +C S V+ K+ C+ CG H +C
Sbjct: 4 KACFVCGKIGHLAEDCDSEKLCYNCNKPGHVQSECPEPRTVEHKQ-CYNCGETGHVKSEC 62
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKS----------GFQNAQVCLKCGDSGHDMFSCRNSY 269
+ Q C+ C + GH +KDCP+ K ++ C KCG+ H C S
Sbjct: 63 T-VQRCYNCNQTGHISKDCPEPRKPREPRNNGRFGANRHGMTCYKCGEPNHMAKDCPQSE 121
Query: 270 S 270
S
Sbjct: 122 S 122
>gi|259127112|gb|ACV94426.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + ++ G + + CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSHVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|259127110|gb|ACV94425.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + ++ G + + CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSHVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|225056162|gb|ACN80886.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 47/81 (58%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S ++++K RGP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 364 EAMSQVTNSATVMMQKSNFRGPKRTV-------KCFNCGKEGHIAKNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H +++C++ Q F+ K
Sbjct: 415 CGKEGHRMKECTERQANFLGK 435
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHRMKEC 425
>gi|410585726|gb|AFV74144.1| gag protein [Human immunodeficiency virus]
Length = 490
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQTNVMMQRSNFKGPKRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 415
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 416 GQEGHQMKDCTERQANFLGK 435
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHIAKNCRAPRKKG------CWKCGQEGHQMKDC 425
>gi|308485264|ref|XP_003104831.1| CRE-GLH-4 protein [Caenorhabditis remanei]
gi|308257529|gb|EFP01482.1| CRE-GLH-4 protein [Caenorhabditis remanei]
Length = 1164
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C+NCGEEGH + +C + + PC C + H + C + + C C++ GH +KDC
Sbjct: 591 CHNCGEEGHFSRDCDKPKQPRFPCRNCNVVGHFAKDCPEPRVPYGPCRNCQEEGHFSKDC 650
Query: 239 PDKHKSGFQNAQVCLKCGDSGH 260
K + + + C +C + GH
Sbjct: 651 -TKERVRTEPTEPCRRCNEEGH 671
>gi|118426968|gb|ABK91235.1| gag protein [Human immunodeficiency virus 1]
Length = 120
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 51
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 52 GKEGHQMKDCTERQANFLGK 71
>gi|118426840|gb|ABK91171.1| gag protein [Human immunodeficiency virus 1]
Length = 169
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|118426874|gb|ABK91188.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|118426942|gb|ABK91222.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|5931483|dbj|BAA84661.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF----ICKKGGHRAKDC 238
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F + + G K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFFRENLAFQQGKAGKFS 447
Query: 239 PDKHKSGFQNAQVCLKCGDSGHD 261
++ ++ N+ K GD G D
Sbjct: 448 SEQTRT---NSPTSRKLGDGGRD 467
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + + ++ G + K CF C K GH A++C
Sbjct: 350 CQGVGGPSHKARVLAEAMSHVQQANIM--MQRGNFKGQKRIKCFNCGKEGHLARNCRAPR 407
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 KKG------CWKCGKEGHQMKDC 424
>gi|426249733|ref|XP_004018604.1| PREDICTED: cellular nucleic acid-binding protein isoform 1 [Ovis
aries]
Length = 176
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 15/108 (13%)
Query: 175 PPDRGW---QTCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFIC 228
PP + W CYNCG GH+A +C+ + R++ C+ CG H R C A Q C+ C
Sbjct: 62 PPAKDWIRGGPCYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQKCYSC 121
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKV 276
+ GH KDC C +CG++GH +C + ++ +
Sbjct: 122 GEFGHIQKDC---------TKVKCYRCGETGHVAINCSKTSEVNCYRC 160
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 11/81 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
Q CYNCG+ GH+A +C A ++K C+ CG H + C+K + C+ C + GH A +C
Sbjct: 95 QCCYNCGKPGHLARDCDHADEQK--CYSCGEFGHIQKDCTKVK-CYRCGETGHVAINCS- 150
Query: 241 KHKSGFQNAQV-CLKCGDSGH 260
+ ++V C +CG+SGH
Sbjct: 151 ------KTSEVNCYRCGESGH 165
>gi|259127107|gb|ACV94424.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVHQTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + ++ G + + CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSHVHQTNIM--MQRGNFRGQRRIKCFNCGKEGHLAKNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|118426850|gb|ABK91176.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|27464882|gb|AAO16234.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SGNIMMQRSNFKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|118426964|gb|ABK91233.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|320410169|gb|ADW26872.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V S NI+++ RG F P R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVTNSANIMMQ---RG--NFRP-QRKXVKCFNCGKEGHIAKNCRAP--RKKGCWKC 416
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 417 GKEGHQMKXCTERQANFLGK 436
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSANIMMQRGNFRPQRKXVKCFNCGKEGHIAKNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKXC 426
>gi|118426910|gb|ABK91206.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|18699114|gb|AAL78393.1|AF413968_1 gag protein [Human immunodeficiency virus 1]
Length = 219
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 86 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 135
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 136 GKEGHQMKNCTERQANFL 153
Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M +C
Sbjct: 111 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKNC 145
>gi|67478497|ref|XP_654640.1| zinc finger protein containing CCHC type domain [Entamoeba
histolytica HM-1:IMSS]
gi|56471707|gb|EAL49254.1| zinc finger protein containing CCHC type domain [Entamoeba
histolytica HM-1:IMSS]
gi|449708078|gb|EMD47605.1| zinc finger protein containing CCHC type domain containing protein
[Entamoeba histolytica KU27]
Length = 164
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQCSKAQD-------CFICKKGG 232
+ C+ C + GH NC K + C+ CGS +H +R C + + CF+C + G
Sbjct: 14 KICFYCRQPGHCLKNCPKKAKGEDSICYNCGSHDHILRDCPEPRTGKLAFSTCFVCHQMG 73
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
H ++DCP+ K + C CGD H C N
Sbjct: 74 HISRDCPNNPKGIYPQGGGCRYCGDVNHFAKDCPN 108
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 183 CYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCS--------KAQDCFICKKG 231
CYNCG H+ +C R+ CFVC + H R C + C C
Sbjct: 40 CYNCGSHDHILRDCPEPRTGKLAFSTCFVCHQMGHISRDCPNNPKGIYPQGGGCRYCGDV 99
Query: 232 GHRAKDCPDKHK 243
H AKDCP+K K
Sbjct: 100 NHFAKDCPNKRK 111
>gi|407740569|gb|AFU33157.1| gag protein [Human immunodeficiency virus 1]
gi|407740574|gb|AFU33161.1| gag protein [Human immunodeficiency virus 1]
gi|407740584|gb|AFU33169.1| gag protein [Human immunodeficiency virus 1]
gi|407740594|gb|AFU33177.1| gag protein [Human immunodeficiency virus 1]
gi|407740599|gb|AFU33181.1| gag protein [Human immunodeficiency virus 1]
gi|407740609|gb|AFU33189.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSNVQHANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|300720699|gb|ADK33438.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SINIMMQKSNFRGPKRTX-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHHM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
R + CF C K GH A++C K G C KCG GH M C
Sbjct: 380 RGPKRTXKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHHMKDC 422
>gi|260533763|gb|ACX45159.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RG + C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVQNTNIMMQRGNFRGQKKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 411
Query: 210 GSLEHGVRQCSKAQDCFICK 229
GS H ++ C++ Q F+ K
Sbjct: 412 GSEGHQMKDCTERQANFLGK 431
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 374 MQRGNFRGQKKIKCFNCGKEGHLARNCRAPRKKG------CWKCGSEGHQMKDC 421
>gi|118426852|gb|ABK91177.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|16751249|gb|AAL05325.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SGNIMMQRSNFKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 37.4 bits (85), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|55979918|gb|AAV69373.1| gag protein [Human immunodeficiency virus 1]
gi|118426800|gb|ABK91151.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|407740589|gb|AFU33173.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSNVQHANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|345561223|gb|EGX44319.1| hypothetical protein AOL_s00193g47 [Arthrobotrys oligospora ATCC
24927]
Length = 180
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 21/99 (21%)
Query: 183 CYNCGEEGHMAVNCR-------------------SAVKRKKPCFVCGSLEHGVRQC-SKA 222
CY+CG+ GH+A NC ++ R C+ CG H R C ++A
Sbjct: 39 CYSCGQPGHLARNCPGNQRFQGGGFNGRNNMRGYASAPRPATCYKCGGPNHYARDCQAQA 98
Query: 223 QDCFICKKGGHRAKDCPDKHKSGFQNA-QVCLKCGDSGH 260
C+ C K GH ++DC + A + C +CG++GH
Sbjct: 99 MKCYACGKLGHISRDCTAPNGGPLNTAGKTCYRCGEAGH 137
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK---------AQDCFICKKGG 232
TCY CG H A +C++ + C+ CG L H R C+ + C+ C + G
Sbjct: 80 TCYKCGGPNHYARDCQAQAMK---CYACGKLGHISRDCTAPNGGPLNTAGKTCYRCGEAG 136
Query: 233 HRAKDCP 239
H ++DCP
Sbjct: 137 HISRDCP 143
>gi|238734095|gb|ACR55340.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+A RKK C+ CG H ++ C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAA--RKKGCWKCGKEGHQMKDCTERQANFLGK 435
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 378 MQRGNFRGQKKIKCFNCGKEGHLARNCRAARKKG------CWKCGKEGHQMKDC 425
>gi|118426818|gb|ABK91160.1| gag protein [Human immunodeficiency virus 1]
Length = 158
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCNERQANFLGK 88
>gi|110750470|gb|ABG90429.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 156 EISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEH 214
+++ NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H
Sbjct: 366 QVNTNIMMQRNNFKGPRRTI-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGQEGH 416
Query: 215 GVRQCSKAQDCFICK 229
++ C++ Q F+ K
Sbjct: 417 QMKDCTERQANFLGK 431
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIAKNCRAPRKKG------CWKCGQEGHQMKDC 421
>gi|17046792|gb|AAL34805.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V S+ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVNGSNVLMQRGNFKGPKRII-------KCFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|158295392|ref|XP_316189.4| AGAP006128-PA [Anopheles gambiae str. PEST]
gi|157016015|gb|EAA11249.5| AGAP006128-PA [Anopheles gambiae str. PEST]
Length = 1762
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 166 LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDC 225
LL RY DPP R C NCGE GH+ CR+A K C++CG H +C K
Sbjct: 856 LLLKDRYPDPP-RKEIICSNCGERGHVRFKCRNAPKLVT-CYMCGEQGHREPRCPKT--- 910
Query: 226 FICKKGGHRAKDCPDKHKSGFQNA-QVCLKCGDSGHDMFSC 265
+C G + ++ K+ ++A +C CG GH SC
Sbjct: 911 -VCLNCGAKTRNFVRGCKTCARDADTICFSCGVRGHTQRSC 950
>gi|118426836|gb|ABK91169.1| gag protein [Human immunodeficiency virus 1]
Length = 151
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSTFRGPKRIK--------CFNCGREGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 69 GKEGHQMKDCTERQANFL 86
>gi|259127094|gb|ACV94418.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVHRTNIMMQRGNFRGQRRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 33/87 (37%), Gaps = 14/87 (16%)
Query: 182 TCYNCGEEGHMA---VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDC 238
C G GH A S V R G+ G R+ CF C K GH AK+C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSHVHRTNIMMQRGNF-RGQRRI----KCFNCGKEGHLAKNC 403
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 RAPRKKG------CWKCGKEGHQMKEC 424
>gi|429249190|gb|AFZ77639.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 160 NIVLRK-LLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K + +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKGIFKGPKRIK--------CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ +
Sbjct: 424 CTERQANFLGR 434
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G+ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQQTNIM--MQKGIFKGPKRIKCFNCGKEGHIARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|68522014|gb|AAY98613.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSHVNNANVMMQRSNFKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|407740614|gb|AFU33193.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSNVQHANIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 415 GKEGHQMKDCTERQANFLGR 434
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGPKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|255739423|gb|ACU31649.1| gag protein [Human immunodeficiency virus 1]
Length = 504
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+L+K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMLQKNNFKGPRRII-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 422 CTERQANFLGK 432
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|195954541|gb|ACG58963.1| gag protein [Human immunodeficiency virus 1]
gi|238734313|gb|ACR55532.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 11/71 (15%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K RGP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 374 NIMMQKSNFRGPKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWKCGKEGHQMKD 423
Query: 219 CSKAQDCFICK 229
C++ Q F+ +
Sbjct: 424 CTERQANFLGR 434
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|118426866|gb|ABK91184.1| gag protein [Human immunodeficiency virus 1]
gi|118426868|gb|ABK91185.1| gag protein [Human immunodeficiency virus 1]
gi|118426872|gb|ABK91187.1| gag protein [Human immunodeficiency virus 1]
gi|118426878|gb|ABK91190.1| gag protein [Human immunodeficiency virus 1]
gi|118426898|gb|ABK91200.1| gag protein [Human immunodeficiency virus 1]
gi|118426908|gb|ABK91205.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|38491567|gb|AAR21970.1| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ S+ ++ R RG R C+NCG+EGH+A NC++ RKK C+ C
Sbjct: 360 EAMSQVQQSNIMMQRGNFRGQRMIK--------CFNCGKEGHLARNCKAP--RKKGCWKC 409
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 410 GKEGHQMKDCTERQANFLGK 429
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + + CF C K GH A++C
Sbjct: 344 ACQGVGGPGHKARVLAEAMSQVQQSNIM--MQRGNFRGQRMIKCFNCGKEGHLARNCKAP 401
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 402 RKKG------CWKCGKEGHQMKDC 419
>gi|451312353|gb|AGF34656.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 10/70 (14%)
Query: 160 NIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC 219
NI+++K GP+ C+NCG+EGH+A NCR+ RKK C+ CG H ++ C
Sbjct: 374 NIMMQKGNFGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDC 423
Query: 220 SKAQDCFICK 229
++ Q F+ K
Sbjct: 424 TERQANFLGK 433
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 389 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 423
>gi|85700504|gb|ABC74622.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCGEEGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 388 CFNCGEEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 432
>gi|374350331|gb|AEZ35846.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 483
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++TV+ + ++ R +G R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSTVQQTKIMMQRGNFKGQRRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 411 GKEGHQMKDCTERQANFLGK 430
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 386 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 420
>gi|118426808|gb|ABK91155.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|47117592|sp|Q8R1J3.1|ZCHC9_MOUSE RecName: Full=Zinc finger CCHC domain-containing protein 9
gi|19353581|gb|AAH24496.1| Zinc finger, CCHC domain containing 9 [Mus musculus]
Length = 273
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C + ++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
C + GH ++ CPD K + + C CG H CR + + D +
Sbjct: 189 CGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDCRENQNSDRI 235
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C++ GH DCP +S +C +CG + H+M CR
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCR 171
>gi|328785464|ref|XP_001121478.2| PREDICTED: hypothetical protein LOC725656 [Apis mellifera]
Length = 437
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---CFVCGSLEHGVRQCS-------KAQDCFICKKGG 232
C++C + GH +C + C+ CGS EH +C + CFIC++ G
Sbjct: 315 CFHCRKAGHNLSDCPELGSEQAGTGICYKCGSTEHTHFECKVTKPTEYRYATCFICREQG 374
Query: 233 HRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
H +K CPD K + C CGD H
Sbjct: 375 HISKQCPDNPKGIYPQGGACKICGDVTH 402
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQ--VCLKCGDSGHDMFSCR 266
CF C+K GH DCP+ G + A +C KCG + H F C+
Sbjct: 315 CFHCRKAGHNLSDCPE---LGSEQAGTGICYKCGSTEHTHFECK 355
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 179 GWQTCYNCGEEGHMAVNCR---SAVKRKKPCFVCGSLEHGVRQCS--------KAQDCFI 227
G CY CG H C+ R CF+C H +QC + C I
Sbjct: 337 GTGICYKCGSTEHTHFECKVTKPTEYRYATCFICREQGHISKQCPDNPKGIYPQGGACKI 396
Query: 228 CKKGGHRAKDCPDKHKSGFQN 248
C H KDCPD K QN
Sbjct: 397 CGDVTHLKKDCPDLIKEKEQN 417
>gi|255739273|gb|ACU31574.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 156 EISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEH 214
+ ++NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H
Sbjct: 366 QTNNNIMMQRSNFKGPRKI-------VKCFNCGKEGHIARNCRAP--RKKGCWKCGKEGH 416
Query: 215 GVRQCSKAQDCFICK 229
++ C++ Q F+ K
Sbjct: 417 QMKDCTERQANFLGK 431
Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 421
>gi|118426816|gb|ABK91159.1| gag protein [Human immunodeficiency virus 1]
Length = 153
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 20 EAMSQVQHANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 69
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 70 GKEGHQMKDCTERQANFLGK 89
>gi|326417086|gb|ADZ73386.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMRDCTERQANFLGK 434
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMRDC 424
>gi|242027901|gb|ACS75986.1| gag protein [Human immunodeficiency virus 1]
Length = 453
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 10/73 (13%)
Query: 158 SDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 352 SPNIMMQRNNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGREGHQM 402
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 403 KDCTERQANFLGK 415
Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 371 CFNCGKEGHIARNCRAPRKKG------CWKCGREGHQMKDC 405
>gi|259129259|gb|ACV95285.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 15/88 (17%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ +V R RG + C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQANIMVQRGNFRGQKRIK--------CFNCGKEGHLARNCRTP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK-----KGG 232
G H ++ C++ Q F+ K KGG
Sbjct: 415 GKEGHQMKDCTERQANFLGKIWPSSKGG 442
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQQANIM--VQRGNFRGQKRIKCFNCGKEGHLARNCRTP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|164606180|gb|ABY62239.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R ++GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVTNTNIMMQRGNIKGPRRVV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 13/86 (15%)
Query: 183 CYNCGEEGHMA---VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
C G GH A S V G+++ G R+ K CF C K GH A++C
Sbjct: 347 CQGVGGPGHKARVLAEAMSQVTNTNIMMQRGNIK-GPRRVVK---CFNCGKEGHIARNCR 402
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 APRKKG------CWKCGKEGHQMKDC 422
>gi|118426864|gb|ABK91183.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|118426806|gb|ABK91154.1| gag protein [Human immunodeficiency virus 1]
Length = 150
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 17 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 66
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 67 GKEGHQMKDCTERQANFLGK 86
>gi|55416381|gb|AAV50155.1| gag protein [Human immunodeficiency virus 1]
Length = 486
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHDKCMMQRGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 35/87 (40%), Gaps = 14/87 (16%)
Query: 182 TCYNCGEEGHMA---VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDC 238
C G GH A S V+ K C ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHDK-CM----MQRGNFRGPKRIKCFNCGKEGHLARNC 403
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 RAPRKKG------CWKCGKEGHQMKDC 424
>gi|255986550|gb|ACU50658.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG++GH+A NCR+ RKK C+ CG H +++CS+ Q F+ K
Sbjct: 391 CFNCGKQGHIAXNCRAP--RKKGCWKCGKEGHQMKECSEXQANFLGK 435
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G H A A+ + +P + ++ G R K CF C K GH A +C
Sbjct: 349 ACQGVGGPXHKARILAEAMSQVQPTTIM--MQRGNFRNQGKXVKCFNCGKQGHIAXNCRA 406
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 PRKKG------CWKCGKEGHQMKEC 425
>gi|255739425|gb|ACU31650.1| gag protein [Human immunodeficiency virus 1]
Length = 504
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+L+K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMLQKNNFKGPRRII-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 422 CTERQANFLGK 432
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|186940962|dbj|BAG31096.1| gag polyprotein [Human immunodeficiency virus 1]
Length = 501
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQIKDCTEGQANFLGK 436
>gi|119508058|dbj|BAF42451.1| Gag [Human immunodeficiency virus 1]
Length = 492
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + S+ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQAQQSNIMMQRGNFRGQRTIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 411
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 412 GKEGHQMKDCTERQANFLGK 431
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G + + CF C K GH A++C
Sbjct: 346 ACQGVGGPSHKARVLAEAMSQAQQSNIM--MQRGNFRGQRTIKCFNCGKEGHLARNCRAP 403
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 RKKG------CWKCGKEGHQMKDC 421
>gi|118426804|gb|ABK91153.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|403256355|ref|XP_003920846.1| PREDICTED: zinc finger CCHC domain-containing protein 9 [Saimiri
boliviensis boliviensis]
Length = 272
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 130 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 189
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
C + GH ++ CPD K + + C CG H C S + D +
Sbjct: 190 CGEMGHLSRACPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSDRM 236
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+
Sbjct: 121 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCK 172
>gi|383506271|gb|AFH37794.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++CS+ Q F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKECSERQANFLGK 436
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
R K CF C K GH AK+C K G C KCG GH M C
Sbjct: 384 RNQRKIVKCFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKEC 426
>gi|259128714|gb|ACV95064.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 424
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RG + C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 292 EAMSQVQHTNIMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 341
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +R C++ Q F+ K
Sbjct: 342 GKEGHQMRDCTERQANFLGK 361
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 276 ACQGVGGPGHKARVLAEAMSQVQHTNIM--MQRGNFRGQKRIKCFNCGKEGHLARNCRAP 333
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 334 RKKG------CWKCGKEGHQMRDC 351
>gi|32766108|gb|AAP69119.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 369 NIMMQKSNFKGPRRT-------VKCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKE 419
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 420 CTERQTNFLGK 430
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 386 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKEC 420
>gi|429249334|gb|AFZ77711.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V NI++ R R PR C+NCG+EGH+A NCR+ RKK C+
Sbjct: 366 EAMSQVTNPTNIMMQRGNFRSPRKI-------VKCFNCGKEGHIARNCRAP--RKKGCWK 416
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 417 CGKEGHQIKDCTERQANFLGK 437
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCP 239
C G GH A V + + P + ++ G R K CF C K GH A++C
Sbjct: 350 ACQGVGGPGHKARVLAEAMSQVTNPTNIM--MQRGNFRSPRKIVKCFNCGKEGHIARNCR 407
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH + C
Sbjct: 408 APRKKG------CWKCGKEGHQIKDC 427
>gi|320410284|gb|ADW26911.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++CS+ Q F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKECSERQANFLGK 436
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
R K CF C K GH AK+C K G C KCG GH M C
Sbjct: 384 RNQRKIVKCFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKEC 426
>gi|300720819|gb|ADK33518.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++CS+ Q F+ K
Sbjct: 389 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKECSERQANFLGK 433
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 389 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKEC 423
>gi|225056285|gb|ACN80944.1| gag protein [Human immunodeficiency virus 1]
Length = 466
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG EGH+A NCR+ RKK C+ CG EH ++ C++ Q F+ K
Sbjct: 400 CFNCGREGHIAKNCRAP--RKKGCWKCGKEEHQMKDCTERQANFLGK 444
>gi|118426916|gb|ABK91209.1| gag protein [Human immunodeficiency virus 1]
Length = 151
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|39777384|gb|AAR30965.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RG + C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQTNIMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFRGQKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 424
>gi|425774261|gb|EKV12574.1| hypothetical protein PDIG_43280 [Penicillium digitatum PHI26]
gi|425778540|gb|EKV16664.1| hypothetical protein PDIP_34510 [Penicillium digitatum Pd1]
Length = 185
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 26/109 (23%)
Query: 181 QTCYNCGEEGHMAVNC----------------------RSAVKRKKPCFVCGSLEHGVRQ 218
Q CY CG+ GH+A NC A R++ C+ CG H R
Sbjct: 81 QECYKCGQVGHIARNCSQGGNYGGGYSTGGYGGGFGGPGGAGGRQQTCYSCGGFGHMARD 140
Query: 219 CSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
C++ Q C+ C + GH ++DCP + K ++C KC GH +C N
Sbjct: 141 CTQGQKCYNCGEVGHVSRDCPTEAKG----ERMCYKCKQPGHVQSACPN 185
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 173 FDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKP-CFVCGSLEHGVRQC---SKAQDCFIC 228
F P RG C+NCGE H A +C K+ P C+ C H R+C +K + C+ C
Sbjct: 3 FPPAGRGG--CFNCGEASHQAKDC---PKKGNPTCYNCNGQGHLSRECQEPAKEKSCYRC 57
Query: 229 KKGGHRAKDCPD--KHKSGFQNAQVCLKCGDSGHDMFSC 265
+ GH +++CP +Q C KCG GH +C
Sbjct: 58 GQTGHLSRECPQGGDGNYSGGGSQECYKCGQVGHIARNC 96
>gi|403256918|ref|XP_003921090.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Saimiri boliviensis boliviensis]
Length = 196
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 54 VCFHCRKPGHGIADCPAALENQDTGTGICYRCGSTEHEITKCKATVDPALGEFPFAKCFV 113
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
C + GH ++ CPD K + + C CG H C S + D +
Sbjct: 114 CGEMGHPSRACPDNPKGLYADGGGCKLCGSVEHLKKDCPESQNSDRM 160
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 170 PRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRK------KPCFVCGSLEHGVRQC---- 219
P + D G CY CG H C++ V CFVCG + H R C
Sbjct: 69 PAALENQDTGTGICYRCGSTEHEITKCKATVDPALGEFPFAKCFVCGEMGHPSRACPDNP 128
Query: 220 ----SKAQDCFICKKGGHRAKDCPDKHKS 244
+ C +C H KDCP+ S
Sbjct: 129 KGLYADGGGCKLCGSVEHLKKDCPESQNS 157
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+ +
Sbjct: 45 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDTGTGICYRCGSTEHEITKCKAT 98
>gi|358022884|gb|AEU03908.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 366 EAMSQVQQGNVMMQRGNFRGQRTIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 415
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 416 GKEGHQMKDCTERQANFLGK 435
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + V ++ G + + CF C K GH A++C
Sbjct: 350 ACQGVGGPGHKARVLAEAMSQVQQGNVM--MQRGNFRGQRTIKCFNCGKEGHLARNCRAP 407
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 RKKG------CWKCGKEGHQMKDC 425
>gi|226345482|gb|ACO49236.1| gag protein [Human immunodeficiency virus 1]
Length = 133
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ ++ ++ R RGPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSQTNSANIMMQRNNFRGPRKIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 52
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 53 GQEGHQMKDCAERQANFLGK 72
>gi|118426820|gb|ABK91161.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|320410281|gb|ADW26910.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++CS+ Q F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKECSERQANFLGK 436
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
R K CF C K GH AK+C K G C KCG GH M C
Sbjct: 384 RNQRKIVKCFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKEC 426
>gi|166025780|gb|ABY78200.1| gag protein [Human immunodeficiency virus 1]
Length = 504
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 394 CFNCGKEGHIARNCRAP--RKKGCWKCGKXGHQMKECTERQANFLGK 438
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + R K CF C K GH A++C
Sbjct: 352 CQGVGGPGHKARVLAEAMSQVTSSATIMMQKXNFRNQRKTVKCFNCGKEGHIARNCRAPR 411
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 412 KKG------CWKCGKXGHQMKEC 428
>gi|55979916|gb|AAV69372.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|55979920|gb|AAV69374.1| gag protein [Human immunodeficiency virus 1]
Length = 144
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|383506239|gb|AFH37778.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 8/80 (10%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V S NI+++ RG F P R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVTNSANIMMQ---RG--NFRP-QRKSVKCFNCGKEGHIAKNCRAP--RKKGCWKC 416
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 417 GKEGHQMKXCTERQANFLGK 436
Score = 40.4 bits (93), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K+ CF C K GH AK+C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSANIMMQRGNFRPQRKSVKCFNCGKEGHIAKNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKXC 426
>gi|118426946|gb|ABK91224.1| gag protein [Human immunodeficiency virus 1]
Length = 151
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|36365401|gb|AAQ86620.1| gag protein [Human immunodeficiency virus 1]
gi|36365455|gb|AAQ86668.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCGEEGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 396 CFNCGEEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 440
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C + GH A++C
Sbjct: 354 CQGVGGPGHKARVLAEAMSQMTGSATIMMQRGNFRNQRKNVKCFNCGEEGHIARNCRAPR 413
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 414 KKG------CWKCGKEGHQMKDC 430
>gi|300720228|gb|ADK33124.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 388 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 432
>gi|242031476|gb|ACS77733.1| gag protein [Human immunodeficiency virus 1]
Length = 458
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 350 EAMSQANNTNIMIQRSNFKGPRRI-------VKCFNCGKEGHIARNCRAP--RKKGCWKC 400
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 401 GKEGHQIKDCTERQANFLGK 420
>gi|71418284|ref|XP_810806.1| universal minicircle sequence binding protein (UMSBP) [Trypanosoma
cruzi strain CL Brener]
gi|70875395|gb|EAN88955.1| universal minicircle sequence binding protein (UMSBP), putative
[Trypanosoma cruzi]
Length = 193
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 179 GWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSKAQD----------C 225
G + CYNCG+ GH++ C + V + C+ CG + H R+C C
Sbjct: 94 GGRACYNCGQPGHLSRECPTRPPGVMGDRACYNCGRMGHLSRECPNRPAGGFRGVARGAC 153
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ C++ GH A+DCP+ G + C CG +GH +C
Sbjct: 154 YHCQQEGHLARDCPNAPPGG---ERACYNCGQTGHISRAC 190
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 12/102 (11%)
Query: 179 GWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSKAQD-------CFIC 228
G + CYNCG+ GH++ C + + C+ CG H R+C C+ C
Sbjct: 68 GGRACYNCGQPGHLSRECPTRPPGAMGGRACYNCGQPGHLSRECPTRPPGVMGDRACYNC 127
Query: 229 KKGGHRAKDCPDKHKSGFQNAQ--VCLKCGDSGHDMFSCRNS 268
+ GH +++CP++ GF+ C C GH C N+
Sbjct: 128 GRMGHLSRECPNRPAGGFRGVARGACYHCQQEGHLARDCPNA 169
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Query: 179 GWQTCYNCGEEGHMAVNC---RSAVKRKKPCFVCGSLEHGVRQCSK-------AQDCFIC 228
G TC+ CGE GH A C + C+ CG H R+C + C+ C
Sbjct: 16 GGSTCHRCGETGHFARECPNIPPGAMGDRACYNCGQPGHLSRECPTRPPGAMGGRACYNC 75
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+ GH +++CP + G + C CG GH
Sbjct: 76 GQPGHLSRECPTR-PPGAMGGRACYNCGQPGH 106
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 179 GWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSK-------AQDCFIC 228
G + CYNCG+ GH++ C + + C+ CG H R+C + C+ C
Sbjct: 42 GDRACYNCGQPGHLSRECPTRPPGAMGGRACYNCGQPGHLSRECPTRPPGAMGGRACYNC 101
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ GH +++CP + G + C CG GH C N
Sbjct: 102 GQPGHLSRECPTR-PPGVMGDRACYNCGRMGHLSRECPN 139
>gi|326417102|gb|ADZ73393.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 387 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 431
>gi|223056241|gb|ACM80366.1| vasa [Patiria miniata]
Length = 730
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 20/110 (18%)
Query: 183 CYNCGEEGHMAVNCRSA-------VKRKKPCFVCGSLEHGVRQCSKAQD----------C 225
CYNC EEGHM+ +C + C+ C H R C A+ C
Sbjct: 113 CYNCQEEGHMSRDCPNPKSGGGRGGGGGGECYKCHETGHFARDCPNAESRGGGGGGGNKC 172
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQV---CLKCGDSGHDMFSCRNSYSLD 272
+ C++ GH ++DCP+ G + C KC +GH C N S D
Sbjct: 173 YNCQEEGHMSRDCPNPKSGGGRGGGGGGECFKCHQTGHFARECPNEESAD 222
>gi|259127601|gb|ACV94617.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RG + C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 364 EAMSQVQQTNVMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 413
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 414 GKEGHQMKECTERQANFLGK 433
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + V ++ G + K CF C K GH A++C
Sbjct: 348 ACQGVGGPGHKARALAEAMSQVQQTNVM--MQRGNFRGQKRIKCFNCGKEGHLARNCRAP 405
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 RKKG------CWKCGKEGHQMKEC 423
>gi|46946925|gb|AAT06683.1| gag protein [Human immunodeficiency virus 1]
Length = 349
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 11/81 (13%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V+ NI++ R RG + C+NCG+EGH+A NCR+ RKK C+
Sbjct: 215 EAMSQVQQQTNIMMQRGNFRGQKRIK--------CFNCGKEGHLAKNCRAP--RKKGCWK 264
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H +++C++ Q F+ K
Sbjct: 265 CGKEGHQMKECTERQANFLGK 285
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH AK+C K G C KCG GH M C
Sbjct: 228 MQRGNFRGQKRIKCFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKEC 275
>gi|339786840|gb|AEK11586.1| gag protein [Human immunodeficiency virus 1]
gi|402229580|gb|AFQ36664.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 487
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGHMA NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 385 CFNCGKEGHMARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 429
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 385 CFNCGKEGHMARNCRAPRKKG------CWKCGKEGHQMKDC 419
>gi|226345098|gb|ACO49049.1| gag protein [Human immunodeficiency virus 1]
Length = 132
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSPVNSTNIMMQRSNFKGPRRII-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 52
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 53 GREGHQMKDCTERQANFLGK 72
>gi|164606274|gb|ABY62286.1| gag protein [Human immunodeficiency virus 1]
gi|441468849|gb|AGC36779.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 389 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 433
>gi|118426888|gb|ABK91195.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|426236129|ref|XP_004012026.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like [Ovis
aries]
Length = 180
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CF 226
+ C++C + GH +C +A++ ++ C+ CGS EH + +C D CF
Sbjct: 37 KVCFHCRQPGHGIADCPAALENQEMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCF 96
Query: 227 ICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
+C + GH ++ CPD K + + C CG H C S + D +
Sbjct: 97 VCGEMGHLSRSCPDNPKGLYADGGGCRLCGSVEHMKKDCPKSQNSDRM 144
>gi|55979914|gb|AAV69371.1| gag protein [Human immunodeficiency virus 1]
Length = 150
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 20 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 69
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 70 GKEGHQMKDCTERQANFLGK 89
>gi|55979890|gb|AAV69360.1| gag protein [Human immunodeficiency virus 1]
Length = 145
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|303322458|ref|XP_003071222.1| zinc knuckle containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240110921|gb|EER29077.1| zinc knuckle containing protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 195
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 19/102 (18%)
Query: 181 QTCYNCGEEGHMAVNCRSAVK---------------RKKPCFVCGSLEHGVRQCSKAQDC 225
Q CY CG+ GH++ NC R C+ CG H R C++ Q C
Sbjct: 98 QECYKCGQVGHISRNCGQYSGYNGGGYNAGSYRYGNRPLTCYSCGGYGHRARDCTQGQKC 157
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ C + GH ++DC + K +VC KC GH +C N
Sbjct: 158 YNCGETGHVSRDCTTEGK----GERVCYKCKQPGHVQAACPN 195
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 15/85 (17%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
++CY CG GH++ +C A + ++ Q+C+ C + GH +++CP
Sbjct: 44 KSCYRCGLTGHISRDCPQAGESGG---------------ARGQECYKCGQVGHISRECPQ 88
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
+SG Q C KCG GH +C
Sbjct: 89 GGESGEARGQECYKCGQVGHISRNC 113
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 41/103 (39%), Gaps = 31/103 (30%)
Query: 181 QTCYNCGEEGHMAVNC----RSAVKRKKPCFVCGSLEHGVRQCS---------------- 220
Q CY CG+ GH++ C S R + C+ CG + H R C
Sbjct: 71 QECYKCGQVGHISRECPQGGESGEARGQECYKCGQVGHISRNCGQYSGYNGGGYNAGSYR 130
Query: 221 ---KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+ C+ C GHRA+DC Q C CG++GH
Sbjct: 131 YGNRPLTCYSCGGYGHRARDC--------TQGQKCYNCGETGH 165
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 220 SKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
+K + C+ C GH ++DCP +SG Q C KCG GH
Sbjct: 41 AKEKSCYRCGLTGHISRDCPQAGESGGARGQECYKCGQVGH 81
>gi|183206879|gb|ACC54610.1| gag protein [Human immunodeficiency virus 1]
Length = 163
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 34 EAMSQVQQTNIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 83
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 84 GKEGHQMKDCTERQANFLGK 103
>gi|183206876|gb|ACC54608.1| gag protein [Human immunodeficiency virus 1]
Length = 163
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 34 EAMSQVQQTNIMMQKGNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 83
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 84 GKEGHQMKDCTERQANFLGK 103
>gi|121708529|ref|XP_001272160.1| zinc knuckle transcription factor (CnjB), putative [Aspergillus
clavatus NRRL 1]
gi|119400308|gb|EAW10734.1| zinc knuckle transcription factor (CnjB), putative [Aspergillus
clavatus NRRL 1]
Length = 488
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C NCG E H A C ++ CF CG H +C+K + C IC K GH A +C
Sbjct: 65 CRNCGNESHFAREC-PEPRKGMACFNCGEEGHSKAECTKPRVFKGSCRICNKEGHPAAEC 123
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
PD+ VC C GH C + D
Sbjct: 124 PDRP------PDVCKNCQSEGHRTIECTENRKFD 151
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAKD 237
C C E GH A +C A + C CGS +H R C K +D C C + GH ++D
Sbjct: 353 CKRCNEVGHFAKDCPQAPPPRT-CRNCGSEDHIARDCDKPRDVSTVTCRNCDEVGHFSRD 411
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
C K + C CG+ GH + C + S DDL
Sbjct: 412 CTKKKD---WSKVKCNNCGEMGHTIKRCPQATS-DDL 444
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
C NC GH A +C + + C CG+ +H C + +C C + GH AKD
Sbjct: 306 CVNCNASGHRARDCPEVRRDRYACRNCGAPDHKAADCPNPRSAEGVECKRCNEVGHFAKD 365
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CP + C CG H C
Sbjct: 366 CPQAPPP-----RTCRNCGSEDHIARDC 388
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 20/117 (17%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNC---RSAVKR-KKPCFVCGSLEHGVRQCSKA-QDCFICK 229
P DR C NCGE GH A C R+ ++R + C C + H R C + +D + C+
Sbjct: 271 PYDRQIPKCSNCGEMGHTARGCKEERALIERVEVKCVNCNASGHRARDCPEVRRDRYACR 330
Query: 230 KGG---HRAKDCPDKHKSGFQNAQVCLKCGDSGH---------DMFSCRNSYSLDDL 274
G H+A DCP+ + C +C + GH +CRN S D +
Sbjct: 331 NCGAPDHKAADCPNPRSA---EGVECKRCNEVGHFAKDCPQAPPPRTCRNCGSEDHI 384
>gi|55979907|gb|AAV69368.1| gag protein [Human immunodeficiency virus 1]
Length = 143
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|339786846|gb|AEK11589.1| gag protein [Human immunodeficiency virus 1]
gi|339786848|gb|AEK11590.1| gag protein [Human immunodeficiency virus 1]
gi|402229645|gb|AFQ36707.1| gag protein, partial [Human immunodeficiency virus 1]
gi|402229648|gb|AFQ36709.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SVNIMMQKSNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|259127594|gb|ACV94614.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RG + C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 364 EAMSQVQQTNVMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 413
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 414 GKEGHQMKECTERQANFLGK 433
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + V ++ G + K CF C K GH A++C
Sbjct: 348 ACQGVGGPGHKARVLAEAMSQVQQTNVM--MQRGNFRGQKRIKCFNCGKEGHLARNCRAP 405
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 RKKG------CWKCGKEGHQMKEC 423
>gi|255986310|gb|ACU50538.1| gag protein [Human immunodeficiency virus 1]
Length = 351
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGHMA NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 244 CFNCGKEGHMAKNCRAP--RKKGCWKCGKEGHQMKDCTEXQANFLGK 288
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 183 CYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + P ++ G R K CF C K GH AK+C
Sbjct: 202 CQGVGGPGHKARVLAEAMSQMTNPAXXM--MQRGNFRNQRKVFKCFNCGKEGHMAKNCRA 259
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 260 PRKKG------CWKCGKEGHQMKDC 278
>gi|441469027|gb|AGC36933.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 389 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 433
>gi|441468886|gb|AGC36811.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 389 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 433
>gi|441468761|gb|AGC36702.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 389 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 433
>gi|6815764|gb|AAF28714.1|AF184582_1 gag protein [Human immunodeficiency virus 1]
Length = 247
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 177 EAMSQVNHTNIMMQRSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKC 227
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 228 GKEGHQMKDCTEKQANFLGK 247
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 203 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 237
>gi|263201021|gb|ACY70117.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R C++ Q F+ K
Sbjct: 390 CFNCGKEGHLAKNCRAP--RKKGCWKCGKEGHQMRDCTERQANFLGK 434
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMRDC 424
>gi|156337146|ref|XP_001619808.1| hypothetical protein NEMVEDRAFT_v1g782 [Nematostella vectensis]
gi|156203704|gb|EDO27708.1| predicted protein [Nematostella vectensis]
Length = 624
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 43/109 (39%), Gaps = 20/109 (18%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSK-------------AQDC 225
G +TC+ C EEGH A C +A CF C H R+C C
Sbjct: 56 GSRTCHKCNEEGHFARECPNADSGGNKCFKCNESGHFARECPNSGGGGGGFGGGSSGSTC 115
Query: 226 FICKKGGHRAKDCPDKHKSGFQNA-------QVCLKCGDSGHDMFSCRN 267
+ C + GH A++CP+ +G C KC +GH C N
Sbjct: 116 YKCNETGHFARECPNAESNGGGFGGGGGSSDSTCFKCQQTGHFARECPN 164
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 183 CYNCGEEGHMAVNC-RSAVKRKKPCFVCGSLEHGVRQCSKAQD----CFICKKGGHRAKD 237
C CGE GH A +C + + C C H R+C A CF C + GH A++
Sbjct: 36 CRKCGESGHFARDCPQGGGGGSRTCHKCNEEGHFARECPNADSGGNKCFKCNESGHFARE 95
Query: 238 CPD-----KHKSGFQNAQVCLKCGDSGHDMFSCRNSYS 270
CP+ G + C KC ++GH C N+ S
Sbjct: 96 CPNSGGGGGGFGGGSSGSTCYKCNETGHFARECPNAES 133
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 24/93 (25%)
Query: 177 DRGWQTCYNCGEEGHMAVNCRSAVKRKK---------PCFVCGSLEHGVRQCSKAQD--- 224
D G C+ C E GH A C ++ C+ C H R+C A+
Sbjct: 77 DSGGNKCFKCNESGHFARECPNSGGGGGGFGGGSSGSTCYKCNETGHFARECPNAESNGG 136
Query: 225 ------------CFICKKGGHRAKDCPDKHKSG 245
CF C++ GH A++CP++ +G
Sbjct: 137 GFGGGGGSSDSTCFKCQQTGHFARECPNESAAG 169
>gi|118426948|gb|ABK91225.1| gag protein [Human immunodeficiency virus 1]
Length = 133
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 51
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 52 GKEGHQMKDCTERQANFLGK 71
>gi|118426896|gb|ABK91199.1| gag protein [Human immunodeficiency virus 1]
Length = 172
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|441468946|gb|AGC36861.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 389 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 433
>gi|429249284|gb|AFZ77686.1| gag protein [Human immunodeficiency virus 1]
Length = 488
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGHMA NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 387 CFNCGKEGHMAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 431
Score = 38.9 bits (89), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHMAKNCRAPRKKG------CWKCGKEGHQMKDC 421
>gi|166025998|gb|ABY78309.1| gag protein [Human immunodeficiency virus 1]
Length = 509
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 392 CFNCGKEGHIAXNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 436
>gi|17046652|gb|AAL34679.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+L+K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMLQKNNFKGPRRI-------VKCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 422 CTERQANFLGK 432
Score = 37.7 bits (86), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|441468981|gb|AGC36892.1| gag protein [Human immunodeficiency virus 1]
gi|441468990|gb|AGC36900.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 389 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 433
>gi|441468963|gb|AGC36876.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 389 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 433
>gi|441468853|gb|AGC36782.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 389 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 433
>gi|164606272|gb|ABY62285.1| gag protein [Human immunodeficiency virus 1]
gi|283444863|gb|ADB20333.1| gag protein [Human immunodeficiency virus 1]
gi|441468826|gb|AGC36759.1| gag protein [Human immunodeficiency virus 1]
gi|441468878|gb|AGC36804.1| gag protein [Human immunodeficiency virus 1]
gi|441468895|gb|AGC36819.1| gag protein [Human immunodeficiency virus 1]
gi|441468904|gb|AGC36827.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 389 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 433
>gi|259127597|gb|ACV94615.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RG + C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 364 EAMSQVQQTNVMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 413
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 414 GKEGHQMKECTERQANFLGK 433
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + V ++ G + K CF C K GH A++C
Sbjct: 348 ACQGVGGPGHKARVLAEAMSQVQQTNVM--MQRGNFRGQKRIKCFNCGKEGHLARNCRAP 405
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 RKKG------CWKCGKEGHQMKEC 423
>gi|197283749|gb|ACH57429.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG++GH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQNTNIMMQKGNFRGPKRIK--------CFNCGKDGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ CS+ Q F+ K
Sbjct: 415 GKEGHQMKDCSERQANFLGK 434
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSHVQNTNIM--MQKGNFRGPKRIKCFNCGKDGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|37682580|gb|AAQ98262.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ ++ R L+GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 360 EAMSRAQNTNIMMQRSNLKGPKRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 410
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 411 GKEGHQMKDCTERQANFLGK 430
Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 386 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 420
>gi|441468870|gb|AGC36797.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 389 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 433
>gi|441468745|gb|AGC36688.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 389 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 433
>gi|300719811|gb|ADK32846.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRA 235
C+NCG EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K RA
Sbjct: 385 CFNCGREGHIAKNCRAP--RKKGCWKCGXEGHQMKDCTERQANFLGKNWPSRA 435
Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C + GH AK+C K G C KCG GH M C
Sbjct: 385 CFNCGREGHIAKNCRAPRKKG------CWKCGXEGHQMKDC 419
>gi|242031261|gb|ACS77628.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V + ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 345 EAMSQVNNATVLMQRNNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 395
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 396 GQEGHQMKDCTERQANFLGK 415
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 371 CFNCGKEGHIAKNCRAPRKKG------CWKCGQEGHQMKDC 405
>gi|164606276|gb|ABY62287.1| gag protein [Human immunodeficiency virus 1]
gi|441468937|gb|AGC36853.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 389 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 433
>gi|441468954|gb|AGC36868.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 389 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 433
>gi|339786844|gb|AEK11588.1| gag protein [Human immunodeficiency virus 1]
gi|402229642|gb|AFQ36705.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SVNIMMQKSNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|300720780|gb|ADK33492.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 387 CYNCGREGHLAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 431
>gi|259127618|gb|ACV94625.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RG + C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 364 EAMSQVQQTNVMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 413
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 414 GKEGHQMKECTERQANFLGK 433
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + V ++ G + K CF C K GH A++C
Sbjct: 348 ACQGVGGPGHKARVLAEAMSQVQQTNVM--MQRGNFRGQKRIKCFNCGKEGHLARNCRAP 405
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 RKKG------CWKCGKEGHQMKEC 423
>gi|118426940|gb|ABK91221.1| gag protein [Human immunodeficiency virus 1]
Length = 150
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|441468999|gb|AGC36908.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 389 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 433
>gi|402229657|gb|AFQ36715.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SVNIMMQKSNFKGPRKI-------VKCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|402229654|gb|AFQ36713.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SVNIMMQKSNFKGPRKI-------VKCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 37.4 bits (85), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|59003657|gb|AAW83653.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 9/72 (12%)
Query: 158 SDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVR 217
S+ +V R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 369 SNILVQRSSFKGPRRTV-------KCFNCGKEGHVAKNCRAP--RKKGCWKCGKEGHQMK 419
Query: 218 QCSKAQDCFICK 229
C++ Q F+ K
Sbjct: 420 DCTERQANFLGK 431
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHVAKNCRAPRKKG------CWKCGKEGHQMKDC 421
>gi|449681909|ref|XP_002167841.2| PREDICTED: uncharacterized protein LOC100198974, partial [Hydra
magnipapillata]
Length = 706
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
CYNC E GH+ +C S K+ C++CG H +C C+ C GH +KDC +
Sbjct: 76 CYNCDERGHLMRDC-SKPKKIPTCYLCGG-NHARHKCINDL-CYNCMNPGHISKDCKEPR 132
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
S +Q Q CL+C GH +C
Sbjct: 133 LS-YQ--QTCLRCNFQGHTKKNC 152
>gi|339786850|gb|AEK11591.1| gag protein [Human immunodeficiency virus 1]
gi|402229651|gb|AFQ36711.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SVNIMMQKSNFKGPRKIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|300720177|gb|ADK33090.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI++++ +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 STNIMMQRXNFKGPRRXV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|259126515|gb|ACV94228.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|119508068|dbj|BAF42460.1| Gag [Human immunodeficiency virus 1]
Length = 493
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + S+ ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQAQQSNIMMQRGNFRGQRTIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G + + CF C K GH A++C
Sbjct: 347 ACQGVGGPSHKARVLAEAMSQAQQSNIM--MQRGNFRGQRTIKCFNCGKEGHLARNCRAP 404
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 405 RKKG------CWKCGKEGHQMKDC 422
>gi|56266813|gb|AAV85035.1| gag protein [Human immunodeficiency virus 1]
Length = 465
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 7/56 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK-----KGGH 233
C+NCG+EGH+A NCR+ RKK C+ CG H V+ C++ Q F+ K KGG
Sbjct: 389 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQVKDCTERQANFLGKIWPSNKGGQ 442
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 347 ACQGVGGPGHKARVLAEAMSQVQSTNL-NMMQRGNFRGQKRIKCFNCGKEGHLARNCRAP 405
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH + C
Sbjct: 406 RKKG------CWKCGKEGHQVKDC 423
>gi|255739599|gb|ACU31737.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 388 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHNMKECTERQANFLGK 432
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
R + CF C K GH A++C K G C KCG GH+M C
Sbjct: 380 RGAKRIVKCFNCGKEGHIARNCRAPRKKG------CWKCGKEGHNMKEC 422
>gi|110750404|gb|ABG90396.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 STNIMMQKSNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGREGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ +
Sbjct: 420 KDCTERQANFLGR 432
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGREGHQMKDC 422
>gi|93210882|gb|ABF00838.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 156 EISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEH 214
+ ++NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H
Sbjct: 366 QANNNIMMQRSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGH 416
Query: 215 GVRQCSKAQDCFICK 229
++ C++ Q F+ K
Sbjct: 417 QMKDCTERQANFLGK 431
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 421
>gi|395455398|gb|AFN62086.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 156 EISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEH 214
+ + NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H
Sbjct: 366 QANSNIMMQKSNFKGPRKM-------VKCFNCGKEGHIARNCRAP--RKKGCWKCGKEGH 416
Query: 215 GVRQCSKAQDCFICK 229
++ C++ Q F+ K
Sbjct: 417 QMKDCTERQANFLGK 431
Score = 37.4 bits (85), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 421
>gi|384365751|gb|AFH76614.1| gag protein [Human immunodeficiency virus 1]
Length = 507
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CGS H ++ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGSEGHQMKDCTERQANFLGK 436
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
R K CF C K GH A++C K G C KCG GH M C
Sbjct: 384 RNQRKTVKCFNCGKEGHIARNCRAPRKKG------CWKCGSEGHQMKDC 426
>gi|255986077|gb|ACU50422.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHIAXNCRAP--RKKGCWRCGKEGHQMKECTERQANFLGK 435
>gi|117647247|ref|NP_663428.2| zinc finger CCHC domain-containing protein 9 [Mus musculus]
Length = 271
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 14/107 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C + ++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCRANVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
C + GH ++ CPD K + + C CG H CR + + D +
Sbjct: 189 CGEMGHLSRSCPDNTKGVYADGGSCKLCGSVEHFKKDCRENQNSDRI 235
Score = 40.8 bits (94), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C++ GH DCP +S +C +CG + H+M CR
Sbjct: 120 RQAAKKNAMVCFHCRQPGHGIADCPAVLESQDMGTGICYRCGSTEHEMSKCR 171
>gi|118353410|ref|XP_001009973.1| Zinc knuckle family protein [Tetrahymena thermophila]
gi|89291740|gb|EAR89728.1| Zinc knuckle family protein [Tetrahymena thermophila SB210]
Length = 612
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 168 RGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSL--EHGVRQCSKAQDC 225
+ RYF + TC C ++GH C VK VC + +H RQC + + C
Sbjct: 306 KNNRYFQQEQKPQMTCRRCKQQGHFERMCMLEVKD-----VCNNCLGDHFARQCQQ-KIC 359
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC----RNSYS 270
+ C + GH + +CP QN Q C +C GH C NSYS
Sbjct: 360 YSCSQFGHASANCPK------QNQQKCSRCQKPGHIKADCGAIFMNSYS 402
>gi|55979925|gb|AAV69376.1| gag protein [Human immunodeficiency virus 1]
Length = 144
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|399147560|gb|AFP25981.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGHMA NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 387 CFNCGKEGHMARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 431
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 215 GVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
G R+ K CF C K GH A++C K G C KCG GH M C
Sbjct: 380 GTRRIVK---CFNCGKEGHMARNCRAPRKKG------CWKCGKEGHQMKDC 421
>gi|339786551|gb|AEK11442.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|259126523|gb|ACV94232.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|118426890|gb|ABK91196.1| gag protein [Human immunodeficiency virus 1]
Length = 168
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|6093152|emb|CAB58984.1| GAG protein [Human immunodeficiency virus 1]
Length = 493
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 9/62 (14%)
Query: 168 RGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFI 227
+GPR F C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+
Sbjct: 378 KGPRRFI-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFL 428
Query: 228 CK 229
K
Sbjct: 429 GK 430
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 386 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 420
>gi|326416989|gb|ADZ73339.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +G + F C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSNVQHANIMMQRGNFKGQKKFK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGQKKFKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|259126560|gb|ACV94249.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|118426854|gb|ABK91178.1| gag protein [Human immunodeficiency virus 1]
Length = 151
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|376407419|gb|AFB39465.1| gag protein [Human immunodeficiency virus 1]
Length = 506
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R C++ Q F+ K
Sbjct: 393 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMRDCTERQANFLGK 437
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + ++ G R KA CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQTTNTATIMMMQRGNFRNQRKAVKCFNCGKEGHIARNCRAP 409
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 RKKG------CWKCGKEGHQMRDC 427
>gi|299929995|gb|ADJ58205.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQHANIM--MQRGNFKGQKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|255986540|gb|ACU50653.1| gag protein [Human immunodeficiency virus 1]
Length = 481
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CGS H ++ C++ Q F+ K
Sbjct: 373 CFNCGKEGHIARNCRAP--RKKGCWKCGSEGHQMKDCTERQANFLGK 417
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 36/88 (40%), Gaps = 16/88 (18%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGS----LEHG-VRQCSKAQDCFICKKGGHRAKD 237
C G GH A A+ + V G+ ++ G R K CF C K GH A++
Sbjct: 331 CQGVGGPGHKARVLAEAMSQ-----VTGTTNVMMQRGNFRNQRKTVKCFNCGKEGHIARN 385
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C K G C KCG GH M C
Sbjct: 386 CRAPRKKG------CWKCGSEGHQMKDC 407
>gi|166026208|gb|ABY78414.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 392 CFNCGKEGHIAXNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 436
>gi|118426956|gb|ABK91229.1| gag protein [Human immunodeficiency virus 1]
Length = 149
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|118426912|gb|ABK91207.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|387019991|gb|AFJ52113.1| Zinc finger CCHC domain-containing protein 9-like [Crotalus
adamanteus]
Length = 263
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 14/105 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C + ++ + C+ CGS EH + +C D CFI
Sbjct: 121 VCFHCRKPGHGVADCPAVLESQDMGTGICYRCGSTEHEINKCKAKIDPALGEFPYAKCFI 180
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
C + GH ++ CPD K + C CG H C + S D
Sbjct: 181 CGEMGHLSRSCPDNPKGLYAEGGSCRICGSVEHFKRDCPENQSSD 225
>gi|391379681|gb|AFM44313.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 393 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 437
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + V R K CF C K GH A++C
Sbjct: 351 CQGVGGPGHKARILAEAMSQVTNSNVIMMQRGNFRNQRKTIKCFNCGKEGHLARNCRAPR 410
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 411 KKG------CWKCGKEGHQMKEC 427
>gi|18699111|gb|AAL78391.1|AF413967_1 gag protein [Human immunodeficiency virus 1]
Length = 219
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 86 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 135
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 136 GKEGHQMKDCTERQANFL 153
>gi|18699108|gb|AAL78389.1|AF413966_1 gag protein [Human immunodeficiency virus 1]
Length = 219
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 86 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 135
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 136 GKEGHQMKDCTERQANFL 153
>gi|55979923|gb|AAV69375.1| gag protein [Human immunodeficiency virus 1]
Length = 141
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|75625101|sp|O12157.3|GAG_HV192 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains:
RecName: Full=Matrix protein p17; Short=MA; Contains:
RecName: Full=Capsid protein p24; Short=CA; Contains:
RecName: Full=Spacer peptide p2; Contains: RecName:
Full=Nucleocapsid protein p7; Short=NC; Contains:
RecName: Full=Spacer peptide p1; Contains: RecName:
Full=p6-gag
gi|2194184|gb|AAB61122.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H V+ C++ Q F+ K
Sbjct: 389 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQVKDCTERQANFLGK 433
>gi|259128146|gb|ACV94832.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RG + C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHTNILMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHTNIL--MQRGNFRGQKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|166026466|gb|ABY78543.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG EGH+A NCR+ RKK C+ CG H +++CS+ Q F+ K
Sbjct: 393 CFNCGXEGHIARNCRAP--RKKGCWKCGKEGHQMKECSERQANFLGK 437
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 7/84 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + ++ G R K CF C GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSAATVMMQKGNFRXQRKTVKCFNCGXEGHIARNCRAP 409
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 RKKG------CWKCGKEGHQMKEC 427
>gi|392863891|gb|EAS35332.2| zinc knuckle transcription factor [Coccidioides immitis RS]
Length = 482
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKD 237
C+NCG+ GH + C K CF CG H +C + C IC+ GH A +
Sbjct: 51 ACHNCGQPGHFSRECPEPRKASGACFNCGEEGHNKAECPNPRVFKGTCRICQAEGHPAFE 110
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
CPDK VC C GH C + D
Sbjct: 111 CPDK------APDVCKNCKGEGHKTKDCTENRKFD 139
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-----DCFICKKGGHRAKD 237
C C E GH A +C K C CG+ +H +QC + + +C C++ GH AKD
Sbjct: 294 CVICKEIGHRARDCIQPRIDKSGCRNCGNPDHHAKQCPEPRSAEGVECKKCQQVGHFAKD 353
Query: 238 CPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDL 274
CP+K N++ C CG+ GH C ++D++
Sbjct: 354 CPEK----GVNSRACRNCGEEGHMSKECDKPRNMDNV 386
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 176 PDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS-KAQD-CFICKKGGH 233
P + C+NCGEEGH C + K C +C + H +C KA D C CK GH
Sbjct: 68 PRKASGACFNCGEEGHNKAECPNPRVFKGTCRICQAEGHPAFECPDKAPDVCKNCKGEGH 127
Query: 234 RAKDCPDKHK 243
+ KDC + K
Sbjct: 128 KTKDCTENRK 137
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAKD 237
C C + GH A +C + C CG H ++C K ++ C C+K GH ++D
Sbjct: 341 CKKCQQVGHFAKDCPEKGVNSRACRNCGEEGHMSKECDKPRNMDNVTCRNCEKTGHMSRD 400
Query: 238 CP-DKHKSGFQNAQVCLKCGDSGHDMFSC 265
CP +K S Q C C + GH C
Sbjct: 401 CPEEKDWSKVQ----CTNCKEMGHTFRRC 425
>gi|378407269|gb|AFB83147.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 351
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 10/83 (12%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 221 STNIMMQKSNFKGPKRII-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQM 271
Query: 217 RQCSKAQDCFICKKGGHRAKDCP 239
+ C++ Q F+ K +K P
Sbjct: 272 KDCTERQANFLGKIWPSHSKGRP 294
Score = 37.4 bits (85), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 240 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 274
>gi|326417111|gb|ADZ73397.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGQKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 424
>gi|299930375|gb|ADJ58395.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQNVNIM--MQRGNFKGQKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|227057976|gb|ACP18945.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 363 EAMSQAGXTNIMMQRSNFKGPRXI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKC 413
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 414 GKEGHQMKDCTERQANFLGK 433
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 389 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 423
>gi|209576161|gb|ACI64050.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQSANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|151368122|gb|ABS10793.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP P R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSHVQNTNIMMQKGNFRGP-----PKR--IKCFNCGKEGHLARNCRAP--RKKGCWKC 415
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 416 GKEGHQMKDCTERQANFLGK 435
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A A+ + + ++ G R K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSHVQNTNIM--MQKGNFRGPPKRIKCFNCGKEGHLARNCRA 406
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 PRKKG------CWKCGKEGHQMKDC 425
>gi|39777374|gb|AAR30956.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RG + C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQQTNIMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQQTNIM--MQRGNFRGQKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|348503938|ref|XP_003439519.1| PREDICTED: zinc finger CCHC domain-containing protein 9-like
[Oreochromis niloticus]
Length = 275
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 42/97 (43%), Gaps = 14/97 (14%)
Query: 183 CYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCSKAQD----------CFIC 228
C+NC + GH +C A + + CF CGS EH + +C D CFIC
Sbjct: 136 CFNCRKPGHGLADCPEADRDEEMGRGICFRCGSTEHEIYKCKAKVDPALGDYPYAKCFIC 195
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ GH ++ CPD K + C CG H C
Sbjct: 196 GQTGHLSRSCPDNPKGLYAQGGCCHVCGSVEHFQKDC 232
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
CF C+K GH DCP+ + +C +CG + H+++ C+
Sbjct: 136 CFNCRKPGHGLADCPEADRDEEMGRGICFRCGSTEHEIYKCK 177
>gi|259127604|gb|ACV94618.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RG + C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 364 EAMSQVQHTNVMMQRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 413
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 414 GKEGHQMKECTERQANFLGK 433
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + V ++ G + K CF C K GH A++C
Sbjct: 348 ACQGVGGPGHKARVLAEAMSQVQHTNVM--MQRGNFRGQKRIKCFNCGKEGHLARNCRAP 405
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 RKKG------CWKCGKEGHQMKEC 423
>gi|118426848|gb|ABK91175.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|118426798|gb|ABK91150.1| gag protein [Human immunodeficiency virus 1]
Length = 168
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|451170209|gb|AGF32653.1| gag protein [Human immunodeficiency virus 1]
gi|451170343|gb|AGF32764.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 10/71 (14%)
Query: 160 NIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI++ R +GPR P + C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 374 NIMMQRSNFKGPRK---PVK----CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKE 424
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 425 CTERQANFLGK 435
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K CF C K GH A++C K G C KCG GH M C
Sbjct: 387 KPVKCFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|55979884|gb|AAV69357.1| gag protein [Human immunodeficiency virus 1]
Length = 149
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|332079132|gb|AEE00146.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E + V+ S NI+++K RG R C+NCG+EGH+A NCR+ RKK C+
Sbjct: 365 EAMKEVQQSANIMMQKGNFRGQRKDA-------KCFNCGKEGHLARNCRAP--RKKGCWK 415
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 416 CGKEGHQMKDCTERQANFLGK 436
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+K + + R K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMKEVQQSANIMMQKGNFRGQRKDAKCFNCGKEGHLARNCRAP 408
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 409 RKKG------CWKCGKEGHQMKDC 426
>gi|134086055|gb|ABO52881.1| gag protein [Human immunodeficiency virus 1]
gi|134086057|gb|ABO52882.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R C++ Q F+ K
Sbjct: 393 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMRDCTERQANFLGK 437
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH AK+C
Sbjct: 351 CQGVGGPGHKARVLAEAMSQATGANAIMMQRGNFRNQRKTVKCFNCGKEGHIAKNCRAPR 410
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 411 KKG------CWKCGKEGHQMRDC 427
>gi|451170191|gb|AGF32638.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 10/71 (14%)
Query: 160 NIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI++ R +GPR P + C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 374 NIMMQRSNFKGPRK---PVK----CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKE 424
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 425 CTERQANFLGK 435
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K CF C K GH A++C K G C KCG GH M C
Sbjct: 387 KPVKCFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|374350307|gb|AEZ35830.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 386 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 430
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 386 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 420
>gi|339786563|gb|AEK11448.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR--KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
C G GH A A+ + + + S G R+ K CF C K GH AK+C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQVNQANIMMQKSNFKGPRRIVK---CFNCGKEGHIAKNCR 402
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 APRKKG------CWKCGKEGHQMKDC 422
>gi|339786547|gb|AEK11440.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRM-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|339786517|gb|AEK11425.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|326417057|gb|ADZ73372.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|242030280|gb|ACS77152.1| gag protein [Human immunodeficiency virus 1]
Length = 460
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C+K Q F+ K
Sbjct: 371 CFNCGKEGHLARNCRAP--RKKGCWKCGQEGHQMKDCTKRQANFLGK 415
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 371 CFNCGKEGHLARNCRAPRKKG------CWKCGQEGHQMKDC 405
>gi|242028367|gb|ACS76219.1| gag protein [Human immunodeficiency virus 1]
Length = 453
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 345 EAMSQVNHTNVMMQRNNFKGPKRII-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 395
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 396 GREGHQIKDCTERQANFLGK 415
>gi|167651304|gb|ABZ91101.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 15/88 (17%)
Query: 151 GVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
G + S+NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 361 GEAMSQTSNNIMMQRSNFKGPRRNV-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 411
Query: 210 GSLEHGVRQCSKAQDCFICK-----KGG 232
G H ++ C + Q F+ K KGG
Sbjct: 412 GREGHQMKDCGERQANFLGKIWPSHKGG 439
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIAKNCRAPRKKG------CWKCGREGHQMKDC 421
>gi|93210872|gb|ABF00829.1| gag protein [Human immunodeficiency virus 1]
Length = 476
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 372 NIMMQKSNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 422
Query: 219 CSKAQDCFICKKG 231
C++ Q F+ + G
Sbjct: 423 CTERQANFLGRFG 435
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 389 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 423
>gi|67553111|gb|AAY68696.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K R K P
Sbjct: 387 CFNCGKEGHIAKNCRAP--RKKGCWKCGQEGHQMKDCTERQANFLGKIWPSRNKGRP 441
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A A+ + + ++ G + + CF C K GH AK+C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQANSNIM---MQRGNFKGAKRTVKCFNCGKEGHIAKNCRA 402
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 PRKKG------CWKCGQEGHQMKDC 421
>gi|451170255|gb|AGF32691.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 10/71 (14%)
Query: 160 NIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI++ R +GPR P + C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 374 NIMMQRSNFKGPRK---PVK----CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKE 424
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 425 CTERQANFLGK 435
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K CF C K GH A++C K G C KCG GH M C
Sbjct: 387 KPVKCFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|55979888|gb|AAV69359.1| gag protein [Human immunodeficiency virus 1]
Length = 147
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 20 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 69
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 70 GKEGHQMKDCTERQANFLGK 89
>gi|339786537|gb|AEK11435.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR--KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
C G GH A A+ + + + S G R+ K CF C K GH AK+C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQVNQANIMMQKSNFKGPRRIVK---CFNCGKEGHIAKNCR 402
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 APRKKG------CWKCGKEGHQMKDC 422
>gi|339786519|gb|AEK11426.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|339786511|gb|AEK11422.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR--KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
C G GH A A+ + + + S G R+ K CF C K GH AK+C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQVNQANIMMQKSNFKGPRRIVK---CFNCGKEGHIAKNCR 402
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 APRKKG------CWKCGKEGHQMKDC 422
>gi|299930213|gb|ADJ58314.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ +P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSHVQPATIM--MQRGNFKGQKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|255739135|gb|ACU31505.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVNNANVMMQRSNFKGPKRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKXGHQMKDCTERQANFLGK 432
Score = 37.7 bits (86), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIARNCRAPRKKG------CWKCGKXGHQMKDC 422
>gi|115385340|ref|XP_001209217.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114196909|gb|EAU38609.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 227
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 27/112 (24%)
Query: 183 CYNCGEEGHMAVNCRSAV-------------------------KRKKPCFVCGSLEHGVR 217
CYNC + GH+A NC + R C+ CG H R
Sbjct: 65 CYNCSQPGHLARNCPAPASGVGRGAGAPRGGFNGGFRGGYGGYPRAATCYKCGGPNHFAR 124
Query: 218 QC-SKAQDCFICKKGGHRAKDCPDKHKSGFQNA-QVCLKCGDSGHDMFSCRN 267
C ++A C+ C K GH ++DC + +A +VC KC +GH C N
Sbjct: 125 DCQAQAMKCYACGKLGHISRDCTAPNGGPLSSAGKVCYKCAQAGHISRDCPN 176
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 12/68 (17%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQC---------SKAQDCFICKKGG 232
TCY CG H A +C++ + C+ CG L H R C S + C+ C + G
Sbjct: 112 TCYKCGGPNHFARDCQAQAMK---CYACGKLGHISRDCTAPNGGPLSSAGKVCYKCAQAG 168
Query: 233 HRAKDCPD 240
H ++DCP+
Sbjct: 169 HISRDCPN 176
>gi|110808252|sp|P0C1K7.2|GAG_HV19N RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains:
RecName: Full=Matrix protein p17; Short=MA; Contains:
RecName: Full=Capsid protein p24; Short=CA; Contains:
RecName: Full=Spacer peptide p2; Contains: RecName:
Full=Nucleocapsid protein p7; Short=NC; Contains:
RecName: Full=Spacer peptide p1; Contains: RecName:
Full=p6-gag
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 393 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 437
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 393 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 427
>gi|441469017|gb|AGC36924.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 389 CYNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 433
>gi|18844727|dbj|BAB85450.1| gag-pol fusion polyprotein [Human immunodeficiency virus 1]
Length = 1433
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCF----ICKKGGHRAKDC 238
C+NCG EGH+A NCR+ RKK C+ CG H ++ C++ Q F + + G K
Sbjct: 390 CFNCGREGHLARNCRAP--RKKGCWKCGREGHQMKDCTERQANFFRENLAFQQGKAGKFS 447
Query: 239 PDKHKSGFQNAQVCLKCGDSGHD 261
++ ++ N+ K GD G D
Sbjct: 448 SEQTRA---NSPTSRKLGDGGRD 467
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + + + ++ G + K CF C + GH A++C
Sbjct: 350 CQGVGGPSHKARVLAEAMSQAQHASIM--MQRGNFKDRKKIKCFNCGREGHLARNCRAPR 407
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 KKG------CWKCGREGHQMKDC 424
>gi|374350433|gb|AEZ35914.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + V ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSHVQQASVM--MQRGNFKGQKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|339786545|gb|AEK11439.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|297798314|ref|XP_002867041.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp.
lyrata]
gi|297312877|gb|EFH43300.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp.
lyrata]
Length = 257
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 13/100 (13%)
Query: 179 GWQTCYNCGEEGHMAVNCRS---------AVKRKKPCFVCGSLEHGVRQCSK----AQDC 225
G CYNCG+ GH A +C + + C+ CG + H R+C+ ++ C
Sbjct: 156 GKDGCYNCGDIGHFARDCGNQKVTAGSVRSGGGSGSCYTCGGVGHIARECATKRQPSRGC 215
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ C GH A+DC + G C CG GH C
Sbjct: 216 YQCGGSGHLARDCDQRASGGNGGGNKCYSCGKEGHFAREC 255
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 28/102 (27%)
Query: 183 CYNCGEEGHMAVNCR-----------SAVKRKKPCFVCGSLEHGVRQCSKAQ-------- 223
CYNCG+ GH A +C +A K C+ CG + H R C +
Sbjct: 126 CYNCGDAGHFARDCTQKSVGNGDQRGAAGAGKDGCYNCGDIGHFARDCGNQKVTAGSVRS 185
Query: 224 -----DCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
C+ C GH A++C K Q ++ C +CG SGH
Sbjct: 186 GGGSGSCYTCGGVGHIARECATKR----QPSRGCYQCGGSGH 223
>gi|242031235|gb|ACS77615.1| gag protein [Human immunodeficiency virus 1]
gi|242031269|gb|ACS77632.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V + ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 345 EAMSQVNNATVLMQRNNFKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 395
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 396 GQEGHQMKDCTERQANFLGK 415
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 371 CFNCGKEGHIARNCRAPRKKG------CWKCGQEGHQMKDC 405
>gi|259126537|gb|ACV94239.1| gag protein [Human immunodeficiency virus 1]
gi|259126555|gb|ACV94247.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|259126521|gb|ACV94231.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|113706835|gb|ABI36518.1| gag protein [Human immunodeficiency virus 1]
gi|113706886|gb|ABI36552.1| gag protein [Human immunodeficiency virus 1]
Length = 505
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R C++ Q F+ K
Sbjct: 397 CFNCGKEGHIAKNCRAP--RKKGCWKCGREGHQMRDCTERQANFLGK 441
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
R K +CF C K GH AK+C K G C KCG GH M C
Sbjct: 389 RNQRKIVECFNCGKEGHIAKNCRAPRKKG------CWKCGREGHQMRDC 431
>gi|110808251|sp|Q9QC00.2|GAG_HV197 RecName: Full=Gag polyprotein; AltName: Full=Pr55Gag; Contains:
RecName: Full=Matrix protein p17; Short=MA; Contains:
RecName: Full=Capsid protein p24; Short=CA; Contains:
RecName: Full=Spacer peptide p2; Contains: RecName:
Full=Nucleocapsid protein p7; Short=NC; Contains:
RecName: Full=Spacer peptide p1; Contains: RecName:
Full=p6-gag
Length = 495
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ CS+ Q F+ K
Sbjct: 387 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCSERQANFLGK 431
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 23/92 (25%)
Query: 182 TCYNCGEEGH--------MAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
C G GH M+ SAV ++ F G R+ K CF C K GH
Sbjct: 345 ACQGVGGPGHKARVLAEAMSQVTNSAVMMQRGNF------KGQRRIIK---CFNCGKEGH 395
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A++C K G C KCG GH M C
Sbjct: 396 LARNCRAPRKKG------CWKCGKEGHQMKDC 421
>gi|6093137|emb|CAB59007.1| GAG protein [Human immunodeficiency virus 1]
Length = 494
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ CS+ Q F+ K
Sbjct: 386 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCSERQANFLGK 430
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 36/92 (39%), Gaps = 23/92 (25%)
Query: 182 TCYNCGEEGH--------MAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
C G GH M+ SAV ++ F G R+ K CF C K GH
Sbjct: 344 ACQGVGGPGHKARVLAEAMSQVTNSAVMMQRGNF------KGQRRIIK---CFNCGKEGH 394
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
A++C K G C KCG GH M C
Sbjct: 395 LARNCRAPRKKG------CWKCGKEGHQMKDC 420
>gi|55979894|gb|AAV69362.1| gag protein [Human immunodeficiency virus 1]
Length = 143
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|350432446|gb|AEQ28481.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ R+K C+ CG H +++CS+ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RRKGCWKCGKEGHQMKECSERQANFLGK 434
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + +P + ++ G + + CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARILAEAMSQVQPTTIM--MQRGNFKGKRNIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
+ G C KCG GH M C
Sbjct: 407 RRKG------CWKCGKEGHQMKEC 424
>gi|374429877|gb|AEZ51186.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 394 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 438
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + V ++ G + K CF C K GH A++C
Sbjct: 353 ACQGVGGPSHKARVLAEAMSNVQQATVM--MQRGNFKVQKRIKCFNCGKEGHLARNCRAP 410
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 411 RKKG------CWKCGKEGHQMKEC 428
>gi|374350292|gb|AEZ35820.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 491
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 386 CFNCGKEGHLARNCRAP--RKKGCWKCGQEGHQMKECTERQANFLGK 430
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 386 CFNCGKEGHLARNCRAPRKKG------CWKCGQEGHQMKEC 420
>gi|300720552|gb|ADK33340.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 389 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 433
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 389 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 423
>gi|295811568|gb|ADG34645.1| gag protein [Human immunodeficiency virus 1]
Length = 441
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RK+ C+ CG H ++ C++ QD F+ K
Sbjct: 360 CFNCGKEGHIAKNCRAP--RKRGCWKCGKEGHQMKDCTERQDNFLGK 404
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + R K CF C K GH AK+C
Sbjct: 318 CQGVGGPGHKARVLAEAMSQVTNSTTIMMQKGNFRNHRKIVKCFNCGKEGHIAKNCRAPR 377
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 378 KRG------CWKCGKEGHQMKDC 394
>gi|259126788|gb|ACV94296.1| gag protein [Human immunodeficiency virus 1]
gi|259126790|gb|ACV94297.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR-KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A A+ + +P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARILAEAMSQVNQPNIM---MQRGNFRGQKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKEC 424
>gi|259126547|gb|ACV94244.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|259126529|gb|ACV94235.1| gag protein [Human immunodeficiency virus 1]
gi|259126562|gb|ACV94250.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 378 MQRGNFKGQKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|209576191|gb|ACI64065.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQSANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|118426824|gb|ABK91163.1| gag protein [Human immunodeficiency virus 1]
Length = 172
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|451170297|gb|AGF32726.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 10/71 (14%)
Query: 160 NIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI++ R +GPR P + C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 374 NIMMQRSNFKGPRK---PVK----CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKE 424
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 425 CTERQANFLGK 435
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K CF C K GH A++C K G C KCG GH M C
Sbjct: 387 KPVKCFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|451170261|gb|AGF32696.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 10/71 (14%)
Query: 160 NIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI++ R +GPR P + C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 374 NIMMQRSNFKGPRK---PVK----CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKE 424
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 425 CTERQANFLGK 435
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K CF C K GH A++C K G C KCG GH M C
Sbjct: 387 KPVKCFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|451169699|gb|AGF32209.1| gag protein [Human immunodeficiency virus 1]
Length = 510
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 15/85 (17%)
Query: 155 VEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE 213
++ + NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG
Sbjct: 373 MQANSNIMMQKGNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEG 423
Query: 214 HGVRQCSKAQDCFICK-----KGGH 233
H ++ C++ Q F+ K KGG
Sbjct: 424 HQMKDCNERQANFLGKIWPSQKGGR 448
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 395 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 429
>gi|339786573|gb|AEK11453.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR--KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
C G GH A A+ + + + S G R+ K CF C K GH AK+C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQVNQANIMMQKSNFKGPRRIVK---CFNCGKEGHIAKNCR 402
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 APRKKG------CWKCGKEGHQMKDC 422
>gi|339786571|gb|AEK11452.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|339786561|gb|AEK11447.1| gag protein [Human immunodeficiency virus 1]
gi|339786569|gb|AEK11451.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR--KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
C G GH A A+ + + + S G R+ K CF C K GH AK+C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQVNQANIMMQKSNFKGPRRIVK---CFNCGKEGHIAKNCR 402
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 APRKKG------CWKCGKEGHQMKDC 422
>gi|339786505|gb|AEK11419.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|339786493|gb|AEK11413.1| gag protein [Human immunodeficiency virus 1]
gi|339786495|gb|AEK11414.1| gag protein [Human immunodeficiency virus 1]
gi|339786497|gb|AEK11415.1| gag protein [Human immunodeficiency virus 1]
gi|339786790|gb|AEK11561.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|339786489|gb|AEK11411.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|334884494|gb|AEH21358.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 495
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R +G R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQPAXIMMQRSNFKGQRKIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + +P + ++ + + CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQVQPAXIM--MQRSNFKGQRKIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|259128132|gb|ACV94825.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R RG + C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQHTNILMRRGNFRGQKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H +++C++ Q F+ K
Sbjct: 415 GKEGHQMKECTERQANFLGK 434
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + + G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQHTNIL--MRRGNFRGQKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|259126754|gb|ACV94282.1| gag protein [Human immunodeficiency virus 1]
gi|259126774|gb|ACV94291.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + +P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVNQPNIM---MQRGNFRGQKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKEC 424
>gi|55979896|gb|AAV69363.1| gag protein [Human immunodeficiency virus 1]
Length = 144
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|356574489|ref|XP_003555379.1| PREDICTED: uncharacterized protein LOC100783153 [Glycine max]
Length = 1410
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 206 CFVCGSLEHGVRQCS------KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSG 259
CF+C +++H + C K + C C++ GHRAK+CP+ G ++A C CG++G
Sbjct: 72 CFICKAMDHIAKLCPEKAEWEKNKICLRCRRRGHRAKNCPEVL-DGAKDAMYCYNCGENG 130
Query: 260 HDMFSCRNSYSLDDLKVCLYFL 281
H + C + K F+
Sbjct: 131 HSLTQCPHPLQEGGTKFAECFV 152
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 34/75 (45%), Gaps = 12/75 (16%)
Query: 183 CYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCS--------KAQDCFICKK 230
CYNCGE GH C ++ + CFVC H + C K C IC
Sbjct: 123 CYNCGENGHSLTQCPHPLQEGGTKFAECFVCNQRGHLSKNCPQNTHGIYPKGGCCKICGG 182
Query: 231 GGHRAKDCPDKHKSG 245
H AKDCPDK KSG
Sbjct: 183 VTHLAKDCPDKGKSG 197
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKP---CFVCGSLEHGVRQC--------SKAQDCFICKKG 231
C C GH A NC + K C+ CG H + QC +K +CF+C +
Sbjct: 97 CLRCRRRGHRAKNCPEVLDGAKDAMYCYNCGENGHSLTQCPHPLQEGGTKFAECFVCNQR 156
Query: 232 GHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH +K+CP + C CG H
Sbjct: 157 GHLSKNCPQNTHGIYPKGGCCKICGGVTH 185
>gi|339786794|gb|AEK11563.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|339786792|gb|AEK11562.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|339786567|gb|AEK11450.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR--KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
C G GH A A+ + + + S G R+ K CF C K GH AK+C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQVNQANIMMQKSNFKGPRRIVK---CFNCGKEGHIAKNCR 402
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 APRKKG------CWKCGKEGHQMKDC 422
>gi|339786501|gb|AEK11417.1| gag protein [Human immunodeficiency virus 1]
gi|339786509|gb|AEK11421.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|242031239|gb|ACS77617.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V + ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 345 EAMSQVNNATVLMQRNNFKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 395
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 396 GQEGHQMKDCTERQANFLGK 415
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 371 CFNCGKEGHIARNCRAPRKKG------CWKCGQEGHQMKDC 405
>gi|259127761|gb|ACV94675.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCGEEGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 392 CFNCGEEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 436
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C + GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKIVKCFNCGEEGHIARNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKDC 426
>gi|259126793|gb|ACV94298.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + +P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVNQPNIM---MQRGNFRGQKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKEC 424
>gi|238634306|gb|ACR52166.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + P + ++ G R + CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVNPNAIM--MQRGNFRNQKRTIKCFNCGKEGHLARNCRAP 407
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 RKKG------CWKCGKEGHQMKEC 425
>gi|206129672|gb|ACI05433.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + +GPR C+NCG EGH+A NCR+ RKK C+ C
Sbjct: 361 EAMSQVQSTTVLMQKSNFKGPRRII-------KCFNCGREGHIAKNCRAP--RKKGCWKC 411
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 412 GKEGHQMKDCTERQANFLGK 431
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEH--GVRQCSKAQDCFICKKGGHRAKDCP 239
C G GH A A+ + + V + G R+ K CF C + GH AK+C
Sbjct: 345 ACQGVGGPGHKARILAEAMSQVQSTTVLMQKSNFKGPRRIIK---CFNCGREGHIAKNCR 401
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 402 APRKKG------CWKCGKEGHQMKDC 421
>gi|166026096|gb|ABY78358.1| gag protein [Human immunodeficiency virus 1]
Length = 508
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 397 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 441
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 397 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 431
>gi|166026040|gb|ABY78330.1| gag protein [Human immunodeficiency virus 1]
Length = 507
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R C++ Q F+ K
Sbjct: 393 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMRDCTERQANFLGK 437
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + P + ++ G R K CF C K GH AK+C
Sbjct: 352 CQGVGGPSHKARVLAEAMSQVNPPTIM--MQRGNFRNQRKTVKCFNCGKEGHIAKNCRAP 409
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 RKKG------CWKCGKEGHQMRDC 427
>gi|55925630|ref|NP_083434.1| zinc finger CCHC domain-containing protein 13 [Mus musculus]
gi|12854262|dbj|BAB29977.1| unnamed protein product [Mus musculus]
gi|21425582|emb|CAD33940.1| cellular nucleic acid binding-like protein [Mus musculus]
gi|148682147|gb|EDL14094.1| cellular nucleic acid binding protein 2 [Mus musculus]
gi|148877851|gb|AAI45773.1| Zinc finger, CCHC domain containing 13 [Mus musculus]
gi|148878274|gb|AAI45775.1| Zinc finger, CCHC domain containing 13 [Mus musculus]
Length = 170
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 14/88 (15%)
Query: 182 TCYNCGEEGHMAVNCRSAVK-RKKPCFVCGSLEHGVRQCSKA--QDCFICKKGGHRAKDC 238
TCYNCG GH+A +C A + R++ C++C H R C++ Q C+ C + GH KDC
Sbjct: 66 TCYNCGRRGHIAKDCTQAKREREQCCYICSQPGHLARDCNRQEEQKCYTCGEFGHIQKDC 125
Query: 239 PDKHKSGFQNAQV-CLKCGDSGHDMFSC 265
Q+ C +CG++GH +C
Sbjct: 126 ----------TQIKCYRCGENGHMAVNC 143
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKA-----QDCFICKKGGHRAKD 237
CY CGE GH A +C + C+ CG H + C++A Q C+IC + GH A+D
Sbjct: 47 CYRCGETGHYAKDCDLL---QDTCYNCGRRGHIAKDCTQAKREREQCCYICSQPGHLARD 103
Query: 238 CPDKHKSGFQNAQVCLKCGDSGH 260
C Q Q C CG+ GH
Sbjct: 104 C------NRQEEQKCYTCGEFGH 120
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
Q CY C + GH+A +C ++K C+ CG H + C++ + C+ C + GH A +C
Sbjct: 89 QCCYICSQPGHLARDCNRQEEQK--CYTCGEFGHIQKDCTQIK-CYRCGENGHMAVNCS- 144
Query: 241 KHKSGFQNAQV-CLKCGDSGH 260
+ ++V C +CG+SGH
Sbjct: 145 ------KTSEVSCYRCGESGH 159
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 181 QTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGGHRAKDC 238
Q CY CGE GH+ +C + +K C+ CG H CSK + C+ C + GH A++C
Sbjct: 110 QKCYTCGEFGHIQKDC-TQIK----CYRCGENGHMAVNCSKTSEVSCYRCGESGHLAREC 164
Query: 239 P 239
P
Sbjct: 165 P 165
>gi|339786533|gb|AEK11433.1| gag protein [Human immunodeficiency virus 1]
gi|339786539|gb|AEK11436.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|339786527|gb|AEK11430.1| gag protein [Human immunodeficiency virus 1]
gi|339786541|gb|AEK11437.1| gag protein [Human immunodeficiency virus 1]
gi|339786549|gb|AEK11441.1| gag protein [Human immunodeficiency virus 1]
gi|339786555|gb|AEK11444.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|339786491|gb|AEK11412.1| gag protein [Human immunodeficiency virus 1]
gi|339786503|gb|AEK11418.1| gag protein [Human immunodeficiency virus 1]
gi|339786507|gb|AEK11420.1| gag protein [Human immunodeficiency virus 1]
gi|339786515|gb|AEK11424.1| gag protein [Human immunodeficiency virus 1]
gi|339786525|gb|AEK11429.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|334884527|gb|AEH21374.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 424
>gi|334884430|gb|AEH21326.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + V ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSSXQQXTVM--MQRGNFKGQKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|242029925|gb|ACS76989.1| gag protein [Human immunodeficiency virus 1]
Length = 465
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 41/72 (56%), Gaps = 11/72 (15%)
Query: 160 NIVL--RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVR 217
NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 357 NIMMQQRNNFKGPRKII-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQIK 407
Query: 218 QCSKAQDCFICK 229
C++ Q F+ K
Sbjct: 408 DCTERQANFLGK 419
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G H A A+ + + + + + K CF C K GH A++C
Sbjct: 333 CQGVGGPSHKARVLAEAMSQTQNTNIMMQQRNNFKGPRKIIKCFNCGKEGHLARNCRAPR 392
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH + C
Sbjct: 393 KKG------CWKCGKEGHQIKDC 409
>gi|259126776|gb|ACV94292.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFRGQKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 424
>gi|259126764|gb|ACV94287.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + +P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVNQPNIM---MQRGNFRGQKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKEC 424
>gi|259126758|gb|ACV94284.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR-KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A A+ + +P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARILAEAMSQVNQPNIM---MQRGNFRGQKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKEC 424
>gi|259126756|gb|ACV94283.1| gag protein [Human immunodeficiency virus 1]
gi|259126781|gb|ACV94294.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + +P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVNQPNIM---MQRGNFRGQKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKEC 424
>gi|259125298|gb|ACV93711.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H V+ C++ Q F+ K
Sbjct: 392 CFNCGKEGHIARNCRAP--RKKGCWKCGGEGHQVKDCTERQANFLGK 436
>gi|124299543|gb|ABN04713.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 469
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CGS H ++ C++ Q F+ K
Sbjct: 361 CFNCGKEGHIARNCRAP--RKKGCWKCGSEGHQMKDCTERQANFLGK 405
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 319 CQGVGGPGHKARVLAEAMSQVTNSPTVMMQRGNFRNQRKTVKCFNCGKEGHIARNCRAPR 378
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 379 KKG------CWKCGSEGHQMKDC 395
>gi|55275226|gb|AAV49441.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C+K Q F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGREGHQMKDCTKRQANFLGK 436
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 KPIKCFNCGKEGHIAKNCRAPRKKG------CWKCGREGHQMKDC 426
>gi|22596272|gb|AAN03060.1|AF457056_1 gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 388 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 432
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 422
>gi|451170243|gb|AGF32681.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 10/71 (14%)
Query: 160 NIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI++ R +GPR P + C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 374 NIMMQRSNFKGPRK---PVK----CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKE 424
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 425 CTERQANFLGK 435
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
K CF C K GH A++C K G C KCG GH M C
Sbjct: 387 KPVKCFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|55979892|gb|AAV69361.1| gag protein [Human immunodeficiency virus 1]
Length = 142
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|339786535|gb|AEK11434.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|339786513|gb|AEK11423.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR--KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
C G GH A A+ + + + S G R+ K CF C K GH AK+C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQVNQANIMMQKSNFKGPRRIVK---CFNCGKEGHIAKNCR 402
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 APRKKG------CWKCGKEGHQMKDC 422
>gi|334884482|gb|AEH21352.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 394 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 438
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G Q + CF C K GH A++C K G C KCG GH M C
Sbjct: 381 MQRGXFQGQRRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 428
>gi|259126535|gb|ACV94238.1| gag protein [Human immunodeficiency virus 1]
gi|259126543|gb|ACV94242.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|213138226|gb|ACJ44780.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI++R+ +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 371 NIMMRRGNFKGPKRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKE 421
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 422 CTERQANFLGK 432
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKEC 422
>gi|213137767|gb|ACJ44562.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CGS H ++ C++ Q F+ +
Sbjct: 388 CFNCGKEGHLARNCRAP--RKKGCWKCGSEGHQMKDCTERQANFLGR 432
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGSEGHQMKDC 422
>gi|183206858|gb|ACC54596.1| gag protein [Human immunodeficiency virus 1]
Length = 175
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 43 EAMSQVQHTNILMQRSNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 92
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 93 GKEGHQMKDCTERQANFL 110
>gi|124299332|gb|ABN04586.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 455
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+A RKK C+ CG H ++ C++ Q F+ K
Sbjct: 350 CFNCGKEGHIARNCRAA--RKKGCWKCGKEGHQMKDCTERQANFLGK 394
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + ++ G R K CF C K GH A++C
Sbjct: 309 CQGVGGPGHKARVLAEAMSQVTNSTIM--MQKGNFRXPXKIVKCFNCGKEGHIARNCRAA 366
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 367 RKKG------CWKCGKEGHQMKDC 384
>gi|119507247|dbj|BAF42487.1| Gag [Human immunodeficiency virus 1]
Length = 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + R + CF C K GH A++C
Sbjct: 348 ACQGVGGPGHKARVLAEAMSQVSGATSIMMQNSNFRGPKRNIKCFNCGKEGHLARNCRAP 407
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 RKKG------CWKCGKEGHQMKEC 425
>gi|119507257|dbj|BAF42496.1| Gag [Human immunodeficiency virus 1]
Length = 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + R + CF C K GH A++C
Sbjct: 348 ACQGVGGPGHKARVLAEAMSQVSGATSIMMQNSNFRGPKRNIKCFNCGKEGHLARNCRAP 407
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 RKKG------CWKCGKEGHQMKEC 425
>gi|71416083|ref|XP_810085.1| universal minicircle sequence binding protein (UMSBP) [Trypanosoma
cruzi strain CL Brener]
gi|51340810|gb|AAU01009.1| nucleic acid binding protein [Trypanosoma cruzi]
gi|70874566|gb|EAN88234.1| universal minicircle sequence binding protein (UMSBP) [Trypanosoma
cruzi]
Length = 134
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 12/103 (11%)
Query: 178 RGWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSKA-------QDCFI 227
RG + CYNCG+ GH++ C + + C+ CG + H R+C + C+
Sbjct: 8 RGSRACYNCGQPGHLSRECPTRPPGAMGDRACYNCGRMGHLSRECPTRPPGAMGDRACYN 67
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQ--VCLKCGDSGHDMFSCRNS 268
C + GH +++CP++ GF+ C C GH C N+
Sbjct: 68 CGRMGHLSRECPNRPAGGFRGVARGACYHCQQEGHLARDCPNA 110
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 16/100 (16%)
Query: 179 GWQTCYNCGEEGHMAVNCRS---AVKRKKPCFVCGSLEHGVRQCSKAQD----------C 225
G + CYNCG GH++ C + + C+ CG + H R+C C
Sbjct: 35 GDRACYNCGRMGHLSRECPTRPPGAMGDRACYNCGRMGHLSRECPNRPAGGFRGVARGAC 94
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ C++ GH A+DCP+ G + C CG +GH +C
Sbjct: 95 YHCQQEGHLARDCPNAPPGG---ERACYNCGQTGHTSRAC 131
>gi|374429694|gb|AEZ51049.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 492
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ CS+ Q F+ K
Sbjct: 387 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCSERQANFLGK 431
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + V ++ G + K CF C K GH A++C
Sbjct: 346 ACQGVGGPSHKARVLAEAMSQVQQTKVM--MQRGNFKGQKRIKCFNCGKEGHLARNCRAP 403
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 RKKG------CWKCGKEGHQMKDC 421
>gi|242031301|gb|ACS77648.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V + ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 345 EAMSQVNNATVLMQRNNFKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 395
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 396 GQEGHQMKDCTERQANFLGK 415
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 371 CFNCGKEGHIARNCRAPRKKG------CWKCGQEGHQMKDC 405
>gi|255986840|gb|ACU50802.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 397 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 441
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 355 CQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKPIKCFNCGKEGHLARNCRAPR 414
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 415 KKG------CWKCGKEGHQMKEC 431
>gi|238632979|gb|ACR51083.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A A+ + P + ++ G R + CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVNPNAIM--MQRGNFRNQKRTIKCFNCGKEGHLARNCRA 406
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 PRKKG------CWKCGKEGHQMKEC 425
>gi|225056158|gb|ACN80884.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V ++++K RGP+ C+NCG+EGH+A NCR+ RKK C+
Sbjct: 364 EAMSQVTNPATVMMQKSNFRGPKRTA-------KCFNCGKEGHIAKNCRAP--RKKGCWK 414
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H +++C++ Q F+ K
Sbjct: 415 CGKEGHQMKECTERQANFLGK 435
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
R + CF C K GH AK+C K G C KCG GH M C
Sbjct: 383 RGPKRTAKCFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|195954522|gb|ACG58954.1| gag protein [Human immunodeficiency virus 1]
gi|238734129|gb|ACR55370.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ R RG R C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNTSIMMQRGNFRGQRTIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCTERQANFLGK 434
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + + CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQNTSIM--MQRGNFRGQRTIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKDC 424
>gi|22596222|gb|AAN03015.1|AF457051_1 gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R C++ Q F+ K
Sbjct: 391 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMRDCTERQANFLGK 435
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G H A A+ + V ++ G + + CF C K GH AK+C
Sbjct: 347 ACQGVGGPSHKARVLAEAMSQATNSAVTVMMQRGNFKGPKRIIKCFNCGKEGHIAKNCRA 406
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 PRKKG------CWKCGKEGHQMRDC 425
>gi|29119667|gb|AAO63137.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 394 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 438
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 183 CYNCGEEGHMAVNCRSAVKR--KKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCP 239
C G GH A A+ + P + ++ G R K CF C K GH A++C
Sbjct: 352 CQGVGGPGHKARVLAEAMSQVTTNPAIM---MQRGNFRNQRKTVKCFNCGKEGHLARNCR 408
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 409 APRKKG------CWKCGKEGHQMKEC 428
>gi|339786529|gb|AEK11431.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|339786499|gb|AEK11416.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|238632976|gb|ACR51081.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A A+ + P + ++ G R + CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVNPNAIM--MQRGNFRNQKRTIKCFNCGKEGHLARNCRA 406
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 PRKKG------CWKCGKEGHQMKEC 425
>gi|118426954|gb|ABK91228.1| gag protein [Human immunodeficiency virus 1]
Length = 169
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ + ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSKVQNASIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|108860395|dbj|BAE95917.1| Gag [Human immunodeficiency virus 1]
Length = 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + R + CF C K GH A++C
Sbjct: 348 ACQGVGGPGHKARVLAEAMSQVSGATSIMMQNSNFRGPKRNIKCFNCGKEGHLARNCRAP 407
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 RKKG------CWKCGKEGHQMKEC 425
>gi|29119669|gb|AAO63138.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 394 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 438
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + V R K CF C K GH A++C
Sbjct: 351 ACQGVGGPGHKARVLAEAMSQVTNNPVIMMQRGNFRNQRKTVKCFNCGKEGHLARNCRAP 410
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 411 RKKG------CWKCGKEGHQMKEC 428
>gi|4262337|gb|AAD14573.1| gag protein [Human immunodeficiency virus 1]
Length = 490
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 386 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 430
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 386 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 420
>gi|71794595|emb|CAI28835.1| gag polyprotein [Human immunodeficiency virus 1]
Length = 495
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 387 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 431
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 347 CQGVGGPGHKARVLAEAMSQVQNTNIL--MQRGNFKGQKRIKCFNCGKEGHLARNCRAPR 404
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 405 KKG------CWKCGKEGHQMKEC 421
>gi|339786521|gb|AEK11427.1| gag protein [Human immunodeficiency virus 1]
gi|339786523|gb|AEK11428.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIRPSHKGG 440
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|300719898|gb|ADK32904.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 422 CTERQANFLGK 432
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|242031229|gb|ACS77612.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V + ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 345 EAMSQVNNATVLMQRNNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 395
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 396 GQEGHQMKDCTERQANFLGK 415
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 371 CFNCGKEGHIAKNCRAPRKKG------CWKCGQEGHQMKDC 405
>gi|242031215|gb|ACS77605.1| gag protein [Human immunodeficiency virus 1]
gi|242031217|gb|ACS77606.1| gag protein [Human immunodeficiency virus 1]
gi|242031219|gb|ACS77607.1| gag protein [Human immunodeficiency virus 1]
gi|242031221|gb|ACS77608.1| gag protein [Human immunodeficiency virus 1]
gi|242031223|gb|ACS77609.1| gag protein [Human immunodeficiency virus 1]
gi|242031227|gb|ACS77611.1| gag protein [Human immunodeficiency virus 1]
gi|242031231|gb|ACS77613.1| gag protein [Human immunodeficiency virus 1]
gi|242031233|gb|ACS77614.1| gag protein [Human immunodeficiency virus 1]
gi|242031241|gb|ACS77618.1| gag protein [Human immunodeficiency virus 1]
gi|242031245|gb|ACS77620.1| gag protein [Human immunodeficiency virus 1]
gi|242031263|gb|ACS77629.1| gag protein [Human immunodeficiency virus 1]
gi|242031275|gb|ACS77635.1| gag protein [Human immunodeficiency virus 1]
gi|242031281|gb|ACS77638.1| gag protein [Human immunodeficiency virus 1]
gi|242031283|gb|ACS77639.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V + ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 345 EAMSQVNNATVLMQRNNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKC 395
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 396 GQEGHQMKDCTERQANFLGK 415
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 371 CFNCGKEGHIAKNCRAPRKKG------CWKCGQEGHQMKDC 405
>gi|259126768|gb|ACV94289.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR-KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A A+ + +P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARILAEAMSQVNQPNIM---MQRGNFRGQKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKEC 424
>gi|259126762|gb|ACV94286.1| gag protein [Human immunodeficiency virus 1]
gi|259126766|gb|ACV94288.1| gag protein [Human immunodeficiency virus 1]
gi|259126778|gb|ACV94293.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + +P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVNQPNIM---MQRGNFRGQKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKEC 424
>gi|238733861|gb|ACR55134.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 392 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 436
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 392 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 426
>gi|17046682|gb|AAL34706.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
N++++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +++
Sbjct: 368 NVMMQKGNFKGPRRVI-------KCFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKE 418
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 419 CTERQANFLGK 429
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 385 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 419
>gi|451169687|gb|AGF32199.1| gag protein [Human immunodeficiency virus 1]
gi|451169752|gb|AGF32253.1| gag protein [Human immunodeficiency virus 1]
gi|451169794|gb|AGF32288.1| gag protein [Human immunodeficiency virus 1]
Length = 510
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 15/85 (17%)
Query: 155 VEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE 213
++ + NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG
Sbjct: 373 MQANSNIMMQKGNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEG 423
Query: 214 HGVRQCSKAQDCFICK-----KGGH 233
H ++ C++ Q F+ K KGG
Sbjct: 424 HQMKDCNERQANFLGKIWPSQKGGR 448
Score = 38.1 bits (87), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 395 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 429
>gi|363583951|gb|AEW27513.1| gag protein [Human immunodeficiency virus 1]
Length = 489
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V S+ ++ R +GP+ P + C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVNNSNIMMQRNNFKGPKR---PVK----CFNCGKEGHIAKNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|339786702|gb|AEK11517.1| gag protein [Human immunodeficiency virus 1]
gi|339786704|gb|AEK11518.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GP+ CYNCG EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVSNTNIMMQRSNFKGPKRII-------KCYNCGREGHIAKNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 413 GKEGHQMKDCTERQANFLGR 432
>gi|339786557|gb|AEK11445.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 422 CTERQANFLGK 432
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 182 TCYNCGEEGHMAVNCRSAVKR--KKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCP 239
C G GH A A+ + + + S G R+ K CF C K GH AK+C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQVNQANIMMQKSNFKGPRRIVK---CFNCGKEGHIAKNCR 402
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 APRKKG------CWKCGKEGHQMKDC 422
>gi|339786553|gb|AEK11443.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 15/79 (18%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK-----KGG 232
C++ Q F+ K KGG
Sbjct: 422 CTERQANFLGKIWPSHKGG 440
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|328834254|gb|AEB52684.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 388 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 432
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 422
>gi|269307765|gb|ACZ33970.1| gag protein [Human immunodeficiency virus 1]
Length = 454
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GP+ C+NCG+EGHMA NCR+ RKK C+ CG H ++
Sbjct: 355 NIMMQKSNFKGPKRII-------KCFNCGKEGHMARNCRAP--RKKGCWKCGKEGHQMKD 405
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 406 CTERQANFLGK 416
Score = 37.7 bits (86), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 372 CFNCGKEGHMARNCRAPRKKG------CWKCGKEGHQMKDC 406
>gi|259126783|gb|ACV94295.1| gag protein [Human immunodeficiency virus 1]
gi|259126795|gb|ACV94299.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + +P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVNQPNIM---MQRGNFRGQKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKEC 424
>gi|238634295|gb|ACR52159.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + P + ++ G R + CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVNPNAIM--MQRGNFRNQKRTIKCFNCGKEGHLARNCRAP 407
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 RKKG------CWKCGKEGHQMKEC 425
>gi|238634242|gb|ACR52116.1| gag protein [Human immunodeficiency virus 1]
gi|238634248|gb|ACR52120.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + P + ++ G R + CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVNPNAIM--MQRGNFRNQKRTIKCFNCGKEGHLARNCRAP 407
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 RKKG------CWKCGKEGHQMKEC 425
>gi|238634125|gb|ACR52024.1| gag protein [Human immunodeficiency virus 1]
gi|238634134|gb|ACR52032.1| gag protein [Human immunodeficiency virus 1]
gi|238634143|gb|ACR52040.1| gag protein [Human immunodeficiency virus 1]
gi|238634152|gb|ACR52048.1| gag protein [Human immunodeficiency virus 1]
gi|238634160|gb|ACR52055.1| gag protein [Human immunodeficiency virus 1]
gi|238634169|gb|ACR52063.1| gag protein [Human immunodeficiency virus 1]
gi|238634178|gb|ACR52071.1| gag protein [Human immunodeficiency virus 1]
gi|238634187|gb|ACR52079.1| gag protein [Human immunodeficiency virus 1]
gi|238634239|gb|ACR52114.1| gag protein [Human immunodeficiency virus 1]
gi|238634245|gb|ACR52118.1| gag protein [Human immunodeficiency virus 1]
gi|238634440|gb|ACR52281.1| gag protein [Human immunodeficiency virus 1]
gi|238634443|gb|ACR52283.1| gag protein [Human immunodeficiency virus 1]
gi|238634509|gb|ACR52340.1| gag protein [Human immunodeficiency virus 1]
gi|238634515|gb|ACR52344.1| gag protein [Human immunodeficiency virus 1]
gi|238634518|gb|ACR52346.1| gag protein [Human immunodeficiency virus 1]
gi|238635485|gb|ACR52734.1| gag protein [Human immunodeficiency virus 1]
gi|238635520|gb|ACR52764.1| gag protein [Human immunodeficiency virus 1]
gi|238635531|gb|ACR52773.1| gag protein [Human immunodeficiency virus 1]
gi|238635534|gb|ACR52775.1| gag protein [Human immunodeficiency virus 1]
gi|238635540|gb|ACR52780.1| gag protein [Human immunodeficiency virus 1]
gi|238635546|gb|ACR52785.1| gag protein [Human immunodeficiency virus 1]
gi|238635558|gb|ACR52795.1| gag protein [Human immunodeficiency virus 1]
gi|238635564|gb|ACR52800.1| gag protein [Human immunodeficiency virus 1]
gi|357395161|gb|AET76070.1| gag protein [Human immunodeficiency virus 1]
gi|357395420|gb|AET76297.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + P + ++ G R + CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVNPNAIM--MQRGNFRNQKRTIKCFNCGKEGHLARNCRAP 407
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 RKKG------CWKCGKEGHQMKEC 425
>gi|238632973|gb|ACR51079.1| gag protein [Human immunodeficiency virus 1]
gi|238632985|gb|ACR51087.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A A+ + + ++ G R + CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVNSNAIM--MQRGNFRNQKRTIKCFNCGKEGHLARNCRA 406
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 PRKKG------CWKCGKEGHQMKEC 425
>gi|90903146|gb|ABE02158.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + V ++ G + + CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVQQASVM--MQRGNFKGQRTIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|56608697|gb|AAW02982.1| gag protein [Human immunodeficiency virus 1]
gi|213137181|gb|ACJ44275.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 156 EISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEH 214
+ + NI+++K L+GPR C+NCG+EGH+A NCR+ RKK C+ CG H
Sbjct: 371 QANTNIMMQKSNLKGPRRXV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGQEGH 421
Query: 215 GVRQCSKAQDCFICK 229
++ C+ Q F+ K
Sbjct: 422 QMKDCTGRQANFLGK 436
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 392 CFNCGKEGHIARNCRAPRKKG------CWKCGQEGHQMKDC 426
>gi|55416413|gb|AAV50170.1| gag protein [Human immunodeficiency virus 1]
Length = 479
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 383 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 427
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 343 CQGVGGPGHKARVLAEAMSQVQQTSIM--MQKGNFRGQKRIKCFNCGKEGHLARNCRAPR 400
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 401 KKG------CWKCGKEGHQMKEC 417
>gi|451169805|gb|AGF32297.1| gag protein [Human immunodeficiency virus 1]
Length = 510
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 15/85 (17%)
Query: 155 VEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE 213
++ + NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG
Sbjct: 373 MQANSNIMMQKGNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEG 423
Query: 214 HGVRQCSKAQDCFICK-----KGGH 233
H ++ C++ Q F+ K KGG
Sbjct: 424 HQMKDCNERQANFLGKIWPSQKGGR 448
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 395 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 429
>gi|451169729|gb|AGF32234.1| gag protein [Human immunodeficiency virus 1]
Length = 510
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 15/85 (17%)
Query: 155 VEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE 213
++ + NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG
Sbjct: 373 MQANSNIMMQKGNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEG 423
Query: 214 HGVRQCSKAQDCFICK-----KGGH 233
H ++ C++ Q F+ K KGG
Sbjct: 424 HQMKDCNERQANFLGKIWPSQKGGR 448
Score = 38.1 bits (87), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 395 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 429
>gi|259126770|gb|ACV94290.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + +P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVNQPNIM---MQRGNFRGQKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKEC 424
>gi|259126513|gb|ACV94227.1| gag protein [Human immunodeficiency virus 1]
gi|259126527|gb|ACV94234.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQIKDCTERQANFLGK 435
>gi|255739649|gb|ACU31762.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRRMV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 421
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 422 CTERQANFLGK 432
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|238634289|gb|ACR52155.1| gag protein [Human immunodeficiency virus 1]
gi|238634292|gb|ACR52157.1| gag protein [Human immunodeficiency virus 1]
gi|238634298|gb|ACR52161.1| gag protein [Human immunodeficiency virus 1]
gi|238634303|gb|ACR52164.1| gag protein [Human immunodeficiency virus 1]
gi|238634309|gb|ACR52168.1| gag protein [Human immunodeficiency virus 1]
gi|238634312|gb|ACR52170.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + P + ++ G R + CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVNPNAIM--MQRGNFRNQKRTIKCFNCGKEGHLARNCRAP 407
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 RKKG------CWKCGKEGHQMKEC 425
>gi|238632967|gb|ACR51075.1| gag protein [Human immunodeficiency virus 1]
gi|238632970|gb|ACR51077.1| gag protein [Human immunodeficiency virus 1]
gi|238632982|gb|ACR51085.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A A+ + P + ++ G R + CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVNPNAIM--MQRGNFRNQKRTIKCFNCGKEGHLARNCRA 406
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 PRKKG------CWKCGKEGHQMKEC 425
>gi|213137197|gb|ACJ44282.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R C++ Q F+ K
Sbjct: 387 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMRDCTERQANFLGK 431
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMRDC 421
>gi|195954512|gb|ACG58949.1| gag protein [Human immunodeficiency virus 1]
Length = 510
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R C++ Q F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHHMRDCTERQANFLGK 436
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 221 KAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
KA CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 KAVKCFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHHMRDC 426
>gi|118426886|gb|ABK91194.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQGANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 69 GKEGHQMKDCTERQANFL 86
>gi|409684413|gb|AFV34320.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG EGH+A NCR+ RKK C+ CG H ++ C++ Q+ F+ K
Sbjct: 392 CFNCGREGHLARNCRAP--RKKGCWKCGKEGHQMKDCTERQENFLGK 436
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + ++ G + K CF C + GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQAQQTNILIQRGNFKGQKGIKCFNCGREGHLARNCRAP 408
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 409 RKKG------CWKCGKEGHQMKDC 426
>gi|339786710|gb|AEK11521.1| gag protein [Human immunodeficiency virus 1]
gi|339786714|gb|AEK11523.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GP+ CYNCG EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVSNTNIMMQRSNFKGPKRII-------KCYNCGREGHIAKNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ +
Sbjct: 413 GKEGHQMKDCTERQANFLGR 432
>gi|299930327|gb|ADJ58371.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSQAQNTSIM--MQRGNFKGQKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|259128846|gb|ACV95118.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H V+ C++ Q F+ K
Sbjct: 386 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQVKDCTERQANFLGK 430
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + V ++ G K CF C K GH A++C
Sbjct: 345 ACQGVGGPGHKARVLAEAMSQVQHTNVM--MQRGNFGGQKRIKCFNCGKEGHLARNCRAP 402
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH + C
Sbjct: 403 RKKG------CWKCGKEGHQVKDC 420
>gi|259126533|gb|ACV94237.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQIKDCTERQANFLGK 435
>gi|259126519|gb|ACV94230.1| gag protein [Human immunodeficiency virus 1]
gi|259126550|gb|ACV94245.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|238634301|gb|ACR52163.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + P + ++ G R + CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVNPNAIM--MQRGNFRNQKRTIKCFNCGKEGHLARNCRAP 407
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 RKKG------CWKCGKEGHQMKEC 425
>gi|226345310|gb|ACO49151.1| gag protein [Human immunodeficiency virus 1]
Length = 130
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSQVNNTNVMMQRNNFKGPRRTI-------KCFNCGKEGHLARNCRAP--RKKGCWKC 52
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 53 GKEGHQMKDCTERQANFLGK 72
>gi|47228551|emb|CAG05371.1| unnamed protein product [Tetraodon nigroviridis]
Length = 274
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 14/97 (14%)
Query: 183 CYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCSKAQD----------CFIC 228
C+NC + GH +C A + + C+ CGS EH +++C D CFIC
Sbjct: 135 CFNCRKPGHGLADCPEADRDEEMGRGICYRCGSTEHEIQKCRAKVDPALGEFPYAKCFIC 194
Query: 229 KKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
+ GH ++ CPD K + C CG H C
Sbjct: 195 GETGHLSRTCPDNPKGLYAQGGCCRVCGSVEHFQKDC 231
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
CF C+K GH DCP+ + +C +CG + H++ CR
Sbjct: 135 CFNCRKPGHGLADCPEADRDEEMGRGICYRCGSTEHEIQKCR 176
>gi|396075525|gb|AFN81251.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 393 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 437
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 393 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 427
>gi|299929725|gb|ADJ58070.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ +P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSHVQPVNIM--MQRGNFKGQKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|259126799|gb|ACV94300.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + +P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVNQPNIM---MQRGNFRGQKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKEC 424
>gi|238635552|gb|ACR52790.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + P + ++ G R + CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVNPNAIM--MQRGNFRNQKRTIKCFNCGKEGHLARNCRAP 407
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 408 RKKG------CWKCGKEGHQMKEC 425
>gi|38892736|gb|AAR27731.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R C++ Q F+ K
Sbjct: 387 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMRDCTERQANFLGK 431
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMRDC 421
>gi|37677824|gb|AAQ97497.1| Gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 392 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 436
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSTTVMMQRGNFRNQRKTIKCFNCGKEGHLARNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKEC 426
>gi|29119691|gb|AAO63149.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 392 CFNCGKEGHLAKNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 436
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 392 CFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKEC 426
>gi|55979927|gb|AAV69377.1| gag protein [Human immunodeficiency virus 1]
Length = 145
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHQMKDCTERQANFLGK 88
>gi|209576163|gb|ACI64051.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANXMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|166026496|gb|ABY78558.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 395 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 439
Score = 40.4 bits (93), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 353 CQGVGGPGHKARVLAEAMSQVTNSTAIMMQRGNFRNQRKTIKCFNCGKEGHLARNCRAPR 412
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 413 KKG------CWKCGKEGHQMKEC 429
>gi|87131112|gb|ABD24171.1| gag protein [Human immunodeficiency virus 1]
Length = 486
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 385 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 429
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 344 ACQGVGGPGHKARVLAEAMSQVQNTNIM--MQRGNFRGQKRIKCFNCGKEGHLARNCRAP 401
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 402 RKKG------CWKCGKEGHQMKEC 419
>gi|33088368|gb|AAP93226.1| gag protein [Human immunodeficiency virus 1]
Length = 154
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 24 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 73
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 74 GKEGHQMKDCTERQANFLGK 93
>gi|17864041|gb|AAL47035.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 424
>gi|451169663|gb|AGF32179.1| gag protein [Human immunodeficiency virus 1]
Length = 510
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 15/85 (17%)
Query: 155 VEISDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLE 213
++ + NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG
Sbjct: 373 MQANSNIMMQKGNFKGPRRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEG 423
Query: 214 HGVRQCSKAQDCFICK-----KGGH 233
H ++ C++ Q F+ K KGG
Sbjct: 424 HQMKDCNERQANFLGKIWPSQKGGR 448
Score = 38.1 bits (87), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 395 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 429
>gi|358388038|gb|EHK25632.1| hypothetical protein TRIVIDRAFT_167877 [Trichoderma virens Gv29-8]
Length = 178
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 19/92 (20%)
Query: 174 DPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGH 233
D P +G CYNCG EGH++ +C +K K C+ CG GH
Sbjct: 21 DCPTKGPAKCYNCGGEGHISRDCTEPMKDNKSCYKCGQQ-------------------GH 61
Query: 234 RAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++DCP +G + C KCG+ GH SC
Sbjct: 62 ISRDCPQAGGAGSGQSTECYKCGEKGHIARSC 93
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 20/102 (19%)
Query: 183 CYNCGEEGHMAVNC-----------------RSAVKRKKPCFVCGSLEHGVRQCSKAQDC 225
CY CGE+GH+A +C K C+ CG H R+C C
Sbjct: 80 CYKCGEKGHIARSCPKSGGGFGGNSYGGNSGGYGGGAGKTCYSCGGYGHMSRECVNGMKC 139
Query: 226 FICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRN 267
+ C + GH ++DCP + G ++C KC SGH C N
Sbjct: 140 YNCGESGHYSRDCPKESAGG---EKICYKCQQSGHVQAQCPN 178
>gi|259126752|gb|ACV94281.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 40.8 bits (94), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 182 TCYNCGEEGHMA-VNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPD 240
C G GH A V + + +P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQVNQPNIM---MQRGNFRGQKRIKCFNCGKEGHLARNCRA 405
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 406 PRKKG------CWKCGKEGHQMKEC 424
>gi|259126552|gb|ACV94246.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 391 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQIKDCTERQANFLGK 435
>gi|45361066|gb|AAS59297.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 156 EISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG 215
+ ++N ++ + +G F P R C+NCG+EGH+A NCR+ RK+ C+ CG H
Sbjct: 367 QATNNNIVMMMQKG--NFKGPQRKTIKCFNCGKEGHIAKNCRAP--RKRGCWKCGKEGHQ 422
Query: 216 VRQCSKAQDCFICK 229
++ C++ Q F+ K
Sbjct: 423 MKDCTERQANFLGK 436
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCS--KAQDCFICKKGGHRAKDCP 239
C G GH A A+ + + ++ G + K CF C K GH AK+C
Sbjct: 347 ACQGVGGPGHKARVLAEAMSQATNNNIVMMMQKGNFKGPQRKTIKCFNCGKEGHIAKNCR 406
Query: 240 DKHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 APRKRG------CWKCGKEGHQMKDC 426
>gi|37677834|gb|AAQ97506.1| Gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 392 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 436
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDKH 242
C G GH A A+ + R K CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQVTNSTTVMMQRGNFRNQRKTIKCFNCGKEGHLARNCRAPR 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 KKG------CWKCGKEGHQMKEC 426
>gi|376407224|gb|AFB39290.1| gag protein [Human immunodeficiency virus 1]
Length = 506
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 7/55 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK-----KGG 232
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K KGG
Sbjct: 393 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGKIWPSSKGG 445
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + ++ G R KA CF C K GH A++C
Sbjct: 350 CQGVGGPGHKARVLAEAMSQATNTATIMMMQRGNFRNQRKAVKCFNCGKEGHIARNCRAP 409
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 410 RKKG------CWKCGKEGHQMKEC 427
>gi|374429797|gb|AEZ51126.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 491
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ CS+ Q F+ K
Sbjct: 386 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCSERQANFLGK 430
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 345 ACQGVGGPSHKARVLAEAMSQAQHTNIM--MQRGNFKGQKRIKCFNCGKEGHLARNCRAP 402
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 403 RKKG------CWKCGKEGHQMKDC 420
>gi|46254428|gb|AAS86181.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 150 EGVTTVEISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFV 208
E ++ V S NI++ R RG R C+NCG+EGH+A NCR+ RKK C+
Sbjct: 363 EAMSQVTNSTNIMMQRGNFRGQRKIV-------KCFNCGKEGHIAKNCRAP--RKKGCWK 413
Query: 209 CGSLEHGVRQCSKAQDCFICK 229
CG H ++ C++ Q F+ K
Sbjct: 414 CGKEGHQMKDCTERQANFLGK 434
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|395146534|gb|AFN53688.1| putative actin-depolymerizing factor 12 [Linum usitatissimum]
Length = 388
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 179 GWQTCYNCGEEGHMAVNCRSAVK----RKKPCFVCGSLEHGVRQCSKAQD--------CF 226
G + CYNCGE GH NC ++ + CFVC H + C K + C
Sbjct: 124 GAKLCYNCGETGHSLANCSQPIQDGGTKYASCFVCNEQGHLSKDCPKNANGIYPKGGSCK 183
Query: 227 ICKKGGHRAKDCPDKHK 243
IC H A+DCPDK K
Sbjct: 184 ICGGVTHLARDCPDKAK 200
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 11/90 (12%)
Query: 182 TCYNCGEEGHMAVNC--RSAVKRKKPCFVCGSLEHGVRQCSKAQD---------CFICKK 230
+CY C H+A C ++ +R K C +C H +++C +D C+ C +
Sbjct: 74 SCYICKAVDHIAKLCPQKAEWERDKICLLCRQRGHSLKRCPNKRDGDESVGAKLCYNCGE 133
Query: 231 GGHRAKDCPDKHKSGFQNAQVCLKCGDSGH 260
GH +C + G C C + GH
Sbjct: 134 TGHSLANCSQPIQDGGTKYASCFVCNEQGH 163
>gi|332224858|ref|XP_003261585.1| PREDICTED: zinc finger CCHC domain-containing protein 9 isoform 3
[Nomascus leucogenys]
Length = 327
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 185 VCFHCRKAGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 244
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
C + GH ++ CPD K + + C CG H C S
Sbjct: 245 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPES 285
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+
Sbjct: 176 RQAAKKNAMVCFHCRKAGHGIADCPAALENQDMGTGICYRCGSTEHEITKCK 227
>gi|151413502|gb|ABS11212.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +R C++ Q F+ K
Sbjct: 392 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMRDCTERQANFLGK 436
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 217 RQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
R K CF C K GH AK+C K G C KCG GH M C
Sbjct: 384 RNQRKIVKCFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMRDC 426
>gi|6651480|gb|AAF22328.1|AF193277_1 gag polyprotein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG++GH+A NCR+ RKK C+ C
Sbjct: 365 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKDGHLARNCRAP--RKKGCWKC 414
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 415 GKEGHQMKDCNERQANFLGK 434
Score = 37.7 bits (86), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKDGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|407736951|gb|AFU30140.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 391 CFNCGKEGHLAKNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 435
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 391 CFNCGKEGHLAKNCRAPRKKG------CWKCGKEGHQMKEC 425
>gi|299930039|gb|ADJ58227.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ CS+ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCSERQANFLGK 434
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|260103571|gb|ACX31802.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 212 LEHGVRQCSKAQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
++ G + K CF C K GH A++C K G C KCG GH M C
Sbjct: 377 MQRGNFKGQKRIKCFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 424
>gi|255986602|gb|ACU50684.1| gag protein [Human immunodeficiency virus 1]
Length = 501
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 392 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 436
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG-VRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + ++ G + K CF C K GH A++C
Sbjct: 351 CQGVGGPGHKARVLAEAMSQVTSSTIM--MQRGNFKSQRKTIKCFNCGKEGHLARNCRAP 408
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 409 RKKG------CWKCGKEGHQMKEC 426
>gi|255739571|gb|ACU31723.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 371 NIMMQKSNFKGPRXIV-------KCFNCGKEGHIARNCRAP--RKKGCWKCGKXGHQMKD 421
Query: 219 CSKAQDCFICK 229
C + Q F+ K
Sbjct: 422 CHERQANFLGK 432
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIARNCRAPRKKG------CWKCGKXGHQMKDC 422
>gi|325495414|gb|ADZ17318.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ + ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 364 EAMSQAQQGSIMMQRGNFKGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 413
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 414 GKEGHQIKDCTERQANFLGK 433
>gi|269307989|gb|ACZ34082.1| gag protein [Human immunodeficiency virus 1]
Length = 465
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 160 NIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQ 218
NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 354 NIMMQKSNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKD 404
Query: 219 CSKAQDCFICK 229
C++ Q F+ K
Sbjct: 405 CTERQANFLGK 415
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 371 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 405
>gi|227058029|gb|ACP18964.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V ++ ++ R +GP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQVNNANIMMQRSNFKGPKRIV-------KCFNCGKEGHIAXNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
>gi|226345304|gb|ACO49148.1| gag protein [Human immunodeficiency virus 1]
Length = 132
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E +++ ++ ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSSANQTNIMMQRNNFKGPRRII-------KCFNCGKEGHIAXNCRAP--RKKGCWKC 52
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 53 GKEGHQMKDCTERQANFLGK 72
>gi|212674719|gb|ACJ37134.1| gag protein [Human immunodeficiency virus 1]
Length = 491
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 158 SDNIV--LRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHG 215
++NI+ LR +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H
Sbjct: 367 ANNIIMMLRSNFKGPKRI-------VKCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQ 417
Query: 216 VRQCSKAQDCFICK 229
++ C++ Q F+ K
Sbjct: 418 MKDCNERQANFLGK 431
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + L + + CF C K GH AK+C
Sbjct: 346 ACQGVGGPGHKARVLAEAMSQANNIIMM--LRSNFKGPKRIVKCFNCGKEGHIAKNCRAP 403
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 404 RKKG------CWKCGKEGHQMKDC 421
>gi|118426966|gb|ABK91234.1| gag protein [Human immunodeficiency virus 1]
Length = 157
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 69 GKEGHQMKDCTERQANFL 86
>gi|55139327|gb|AAV41343.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C+K Q F+ K
Sbjct: 389 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCTKRQANFLGK 433
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 389 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 423
>gi|299929849|gb|ADJ58132.1| gag protein [Human immunodeficiency virus 1]
Length = 502
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G H A A+ +P + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPSHKARVLAEAMSHVQPVNIM--MQRGNFKGQKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGKEGHQMKEC 424
>gi|386306926|gb|AFJ05443.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 495
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C+K Q F+ K
Sbjct: 383 CFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTKRQANFLGK 427
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 383 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 417
>gi|307194764|gb|EFN76993.1| hypothetical protein EAI_13365 [Harpegnathos saltator]
Length = 65
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 184 YNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRA 235
Y C E GH+ NC S + R+ C+ CG ++H R C+KA C +C + G A
Sbjct: 4 YRCLERGHVQQNCSSEIDRRNNCYRCGEMDHLARNCTKAAKCVVCAEAGKPA 55
>gi|299929913|gb|ADJ58164.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ CS+ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCSERQANFLGK 434
Score = 37.7 bits (86), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 424
>gi|255739055|gb|ACU31465.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 389 CYNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMKDCTERQANFLGK 433
>gi|213137673|gb|ACJ44517.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ ++ ++ R RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 362 EAMSQANNANIMIQRSNFRGPKRI-------VKCFNCGKEGHIARNCRAP--RKKGCWKC 412
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 413 GKEGHQMKDCTERQANFLGK 432
Score = 37.4 bits (85), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|114599363|ref|XP_526871.2| PREDICTED: zinc finger CCHC domain-containing protein 9 isoform 6
[Pan troglodytes]
gi|114599365|ref|XP_001149663.1| PREDICTED: zinc finger CCHC domain-containing protein 9 isoform 3
[Pan troglodytes]
gi|114599369|ref|XP_001149795.1| PREDICTED: zinc finger CCHC domain-containing protein 9 isoform 5
[Pan troglodytes]
gi|410222042|gb|JAA08240.1| zinc finger, CCHC domain containing 9 [Pan troglodytes]
gi|410264124|gb|JAA20028.1| zinc finger, CCHC domain containing 9 [Pan troglodytes]
gi|410297934|gb|JAA27567.1| zinc finger, CCHC domain containing 9 [Pan troglodytes]
Length = 271
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKP----CFVCGSLEHGVRQCSKAQD----------CFI 227
C++C + GH +C +A++ + C+ CGS EH + +C D CF+
Sbjct: 129 VCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFV 188
Query: 228 CKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNS 268
C + GH ++ CPD K + + C CG H C S
Sbjct: 189 CGEMGHLSRSCPDNPKGLYADGGGCKLCGSVEHLKKDCPES 229
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 217 RQCSK--AQDCFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCR 266
RQ +K A CF C+K GH DCP ++ +C +CG + H++ C+
Sbjct: 120 RQAAKKNAMVCFHCRKPGHGIADCPAALENQDMGTGICYRCGSTEHEITKCK 171
>gi|10185395|emb|CAC08539.1| CCHC zinc finger protein [Trypanosoma brucei]
Length = 140
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 181 QTCYNCGEEGHMAVNCRSA-----VKRKKPCFVCGSLEHGVRQCSKA---------QDCF 226
+TCYNCG GHM+ C +A + + C+ CG +H R C A + C+
Sbjct: 11 RTCYNCGHAGHMSRECPNARSGGNMGGGRSCYNCGQPDHISRDCPNARTGGNMGGGRSCY 70
Query: 227 ICKKGGHRAKDCPDKHKSG-FQNAQVCLKCGDSGHDMFSCRNS 268
C + GH ++DCP+ G + C C GH C N+
Sbjct: 71 NCGRPGHISRDCPNARSGGNMGGGRACYHCQQEGHIARECPNA 113
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 179 GWQTCYNCGEEGHMAVNCRSA-----VKRKKPCFVCGSLEHGVRQCSKAQD--------- 224
G ++CYNCG+ H++ +C +A + + C+ CG H R C A+
Sbjct: 37 GGRSCYNCGQPDHISRDCPNARTGGNMGGGRSCYNCGRPGHISRDCPNARSGGNMGGGRA 96
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
C+ C++ GH A++CP+ + C CG GH +C
Sbjct: 97 CYHCQQEGHIARECPNAPLDAAAGGRACFNCGQPGHLSRAC 137
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 13/76 (17%)
Query: 179 GWQTCYNCGEEGHMAVNCRSA-----VKRKKPCFVCGSLEHGVRQCSKA--------QDC 225
G ++CYNCG GH++ +C +A + + C+ C H R+C A + C
Sbjct: 65 GGRSCYNCGRPGHISRDCPNARSGGNMGGGRACYHCQQEGHIARECPNAPLDAAAGGRAC 124
Query: 226 FICKKGGHRAKDCPDK 241
F C + GH ++ CP K
Sbjct: 125 FNCGQPGHLSRACPVK 140
>gi|55979909|gb|AAV69369.1| gag protein [Human immunodeficiency virus 1]
Length = 151
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 20 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 69
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 70 GKEGHQMKDCTERQANFLGK 89
>gi|300720627|gb|ADK33390.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 10/71 (14%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K +GPR C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 SXNIMMQKSNFKGPRRXX-------KCFNCGKEGHJARNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFI 227
+ C++ Q F+
Sbjct: 420 KDCNERQANFL 430
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHJARNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|300720564|gb|ADK33348.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 7/55 (12%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK-----KGG 232
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K KGG
Sbjct: 383 CFNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGKIWPSHKGG 435
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 383 CFNCGKEGHIARNCRAPRKKG------CWKCGKEGHQMKEC 417
>gi|209576111|gb|ACI64025.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANIMLQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|195409369|gb|ACF95939.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 434
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 390 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 424
>gi|118426814|gb|ABK91158.1| gag protein [Human immunodeficiency virus 1]
Length = 152
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 69 GKEGHQMKDCTERQANFL 86
>gi|332079190|gb|AEE00175.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 448
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 392 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 436
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 392 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKEC 426
>gi|317138215|ref|XP_001816756.2| zinc knuckle transcription factor (CnjB) [Aspergillus oryzae RIB40]
Length = 484
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ----DCFICKKGGHRAKDC 238
C NCG +GH A NC ++ CF CG H +C+K + C +C + GH A C
Sbjct: 58 CRNCGSDGHFARNC-PEPRKGMACFNCGEEGHSKAECTKPRVFKGTCRVCNQEGHPASQC 116
Query: 239 PDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLD 272
P++ VC C GH C+ + D
Sbjct: 117 PERP------PDVCKNCKMEGHRTIDCKENRKFD 144
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD--CFICKKGG 232
P R C+NCGEEGH C K C VC H QC + C CK G
Sbjct: 72 PEPRKGMACFNCGEEGHSKAECTKPRVFKGTCRVCNQEGHPASQCPERPPDVCKNCKMEG 131
Query: 233 HRAKDCPDKHKSGFQN 248
HR DC + K N
Sbjct: 132 HRTIDCKENRKFDLNN 147
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 42/102 (41%), Gaps = 19/102 (18%)
Query: 175 PPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHR 234
P DR C NCGE GH A C+ EH V + + + C C GHR
Sbjct: 270 PYDREIPKCSNCGEMGHTARGCKE--------------EHVVHERVEVK-CVNCSAVGHR 314
Query: 235 AKDCPDKHKSGFQNAQVCLKCGDSGHDMFSCRNSYSLDDLKV 276
A+DC + + F C CG S H C N S + ++
Sbjct: 315 ARDCTEPRRDRF----ACRNCGSSEHKAAECPNPRSAEGVEF 352
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 188 EEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQD-----CFICKKGGHRAKDCPDKH 242
E GH A +C A + C CGS +H R C K +D C C + GH ++DCP K
Sbjct: 351 EFGHFAKDCPQAPAPRT-CRNCGSEDHIARDCDKPRDISTVTCRNCDEVGHFSRDCPKKK 409
Query: 243 KSGFQNAQVCLKCGDSGHDMFSC 265
+ C CG+ GH + C
Sbjct: 410 D---WSKVKCNNCGEMGHTVKRC 429
>gi|300719904|gb|ADK32908.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ CS+ Q F+ K
Sbjct: 387 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKDCSERQANFLGK 431
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHLARNCRAPRKKG------CWKCGKEGHQMKDC 421
>gi|242031225|gb|ACS77610.1| gag protein [Human immunodeficiency virus 1]
gi|242031247|gb|ACS77621.1| gag protein [Human immunodeficiency virus 1]
gi|242031251|gb|ACS77623.1| gag protein [Human immunodeficiency virus 1]
gi|242031255|gb|ACS77625.1| gag protein [Human immunodeficiency virus 1]
gi|242031257|gb|ACS77626.1| gag protein [Human immunodeficiency virus 1]
gi|242031285|gb|ACS77640.1| gag protein [Human immunodeficiency virus 1]
Length = 459
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V + ++ R +GPR C+NCG EGH+A NCR+ RKK C+ C
Sbjct: 345 EAMSQVNNATVLMQRNNFKGPRRIV-------KCFNCGREGHIAKNCRAP--RKKGCWKC 395
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 396 GQEGHQMKDCTERQANFLGK 415
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C + GH AK+C K G C KCG GH M C
Sbjct: 371 CFNCGREGHIAKNCRAPRKKG------CWKCGQEGHQMKDC 405
>gi|226345386|gb|ACO49189.1| gag protein [Human immunodeficiency virus 1]
Length = 130
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V S ++ R +GPR C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 2 EAMSQVNNSKVMMQRSNFKGPRRIV-------KCFNCGKEGHIARNCRAP--RKKGCWKC 52
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 53 GKEGHQMKDCTERQANFLGK 72
>gi|209576115|gb|ACI64027.1| gag protein [Human immunodeficiency virus 1]
Length = 107
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 4 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 53
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 54 GKEGHQMKDCTERQANFLGK 73
>gi|119361927|gb|ABL66914.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H +++C++ Q F+ K
Sbjct: 393 CFNCGKEGHLARNCRAP--RKKGCWKCGKEGHQMKECTERQANFLGK 437
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQ-DCFICKKGGHRAKDCPD 240
C G GH A A+ + V ++ + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQASNAAVAIMMQKSNFKGPKRNIKCFNCGKEGHLARNCRA 408
Query: 241 KHKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 409 PRKKG------CWKCGKEGHQMKEC 427
>gi|55979912|gb|AAV69370.1| gag protein [Human immunodeficiency virus 1]
Length = 145
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 10/80 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 19 EAMSQVQNANIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 68
Query: 210 GSLEHGVRQCSKAQDCFICK 229
G H ++ C++ Q F+ K
Sbjct: 69 GKEGHEMKDCTERQANFLGK 88
>gi|6815730|gb|AAF28680.1|AF184548_1 gag protein [Human immunodeficiency virus 1]
Length = 258
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 9/70 (12%)
Query: 158 SDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVR 217
S N++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H ++
Sbjct: 197 SVNMMQRSNFKGPRRII-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQMK 247
Query: 218 QCSKAQDCFI 227
C++ Q F+
Sbjct: 248 DCTERQANFL 257
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 215 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 249
>gi|281331909|emb|CAY83125.1| gag polyprotein [Human immunodeficiency virus 1]
Length = 498
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CGS H ++ C++ Q F+ +
Sbjct: 390 CFNCGKEGHLARNCRAP--RKKGCWKCGSEGHQMKDCTERQANFLGR 434
Score = 40.4 bits (93), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 8/84 (9%)
Query: 182 TCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICKKGGHRAKDCPDK 241
C G GH A A+ + + + ++ G + K CF C K GH A++C
Sbjct: 349 ACQGVGGPGHKARVLAEAMSQIQNTNIM--MQRGNFKGQKRIKCFNCGKEGHLARNCRAP 406
Query: 242 HKSGFQNAQVCLKCGDSGHDMFSC 265
K G C KCG GH M C
Sbjct: 407 RKKG------CWKCGSEGHQMKDC 424
>gi|259125111|gb|ACV93622.1| gag protein [Human immunodeficiency virus 1]
gi|259125114|gb|ACV93623.1| gag protein [Human immunodeficiency virus 1]
Length = 493
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 389 CFNCGKEGHLARNCRAP--RKKGCWKCGKERHQMKDCTERQANFLGK 433
>gi|213138324|gb|ACJ44824.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 10/75 (13%)
Query: 156 EISDNIVL-RKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEH 214
+ + NI++ R +GPR C+NCG+EGH+A NCR+ RKK C+ CG H
Sbjct: 366 QTNSNIMMQRSNFKGPRRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGH 416
Query: 215 GVRQCSKAQDCFICK 229
++ C++ Q F+ K
Sbjct: 417 QMKDCTERQANFLGK 431
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 387 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 421
>gi|213137175|gb|ACJ44272.1| gag protein [Human immunodeficiency virus 1]
Length = 485
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 10/73 (13%)
Query: 158 SDNIVLRKL-LRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGV 216
S NI+++K +GP+ C+NCG+EGH+A NCR+ RKK C+ CG H +
Sbjct: 369 STNIMMQKSNFKGPKRIV-------KCFNCGKEGHIAKNCRAP--RKKGCWKCGKEGHQM 419
Query: 217 RQCSKAQDCFICK 229
+ C++ Q F+ K
Sbjct: 420 KDCTERQANFLGK 432
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH AK+C K G C KCG GH M C
Sbjct: 388 CFNCGKEGHIAKNCRAPRKKG------CWKCGKEGHQMKDC 422
>gi|118426796|gb|ABK91149.1| gag protein [Human immunodeficiency virus 1]
Length = 153
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 10/78 (12%)
Query: 150 EGVTTVEISDNIVLRKLLRGPRYFDPPDRGWQTCYNCGEEGHMAVNCRSAVKRKKPCFVC 209
E ++ V+ ++ ++ + RGP+ C+NCG+EGH+A NCR+ RKK C+ C
Sbjct: 20 EAMSQVQNTNIMMQKSNFRGPKRIK--------CFNCGKEGHLARNCRAP--RKKGCWKC 69
Query: 210 GSLEHGVRQCSKAQDCFI 227
G H ++ C++ Q F+
Sbjct: 70 GKEGHQMKDCTERQANFL 87
>gi|93210842|gb|ABF00802.1| gag protein [Human immunodeficiency virus 1]
Length = 496
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
C+NCG+EGH+A NCR+ RKK C+ CGS H ++ C++ Q F+ +
Sbjct: 392 CFNCGKEGHLARNCRAP--RKKGCWKCGSEGHQMKDCTERQANFLGR 436
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 225 CFICKKGGHRAKDCPDKHKSGFQNAQVCLKCGDSGHDMFSC 265
CF C K GH A++C K G C KCG GH M C
Sbjct: 392 CFNCGKEGHLARNCRAPRKKG------CWKCGSEGHQMKDC 426
>gi|37682551|gb|AAQ98236.1| gag protein [Human immunodeficiency virus 1]
Length = 495
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 183 CYNCGEEGHMAVNCRSAVKRKKPCFVCGSLEHGVRQCSKAQDCFICK 229
CYNCG+EGH+A NCR+ RKK C+ CG H ++ C++ Q F+ K
Sbjct: 386 CYNCGKEGHIARNCRAP--RKKGCWKCGKEGHQMKDCAERQANFLGK 430
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,042,996,320
Number of Sequences: 23463169
Number of extensions: 220992971
Number of successful extensions: 1703059
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 21299
Number of HSP's that attempted gapping in prelim test: 1548345
Number of HSP's gapped (non-prelim): 102332
length of query: 312
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 170
effective length of database: 9,027,425,369
effective search space: 1534662312730
effective search space used: 1534662312730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)