BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021411
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase
Length = 297
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 136/301 (45%), Gaps = 31/301 (10%)
Query: 25 QVVLRSPHGPSAKVSL--YGGQITSWRNEKGEELLFTSSKAIFKPPKAIRGGISTCFPQF 82
+VVL P + V + YG + SW+ K EE L+ S+ A K +RGGI FP F
Sbjct: 9 EVVLTHPADETTSVHILKYGATVYSWK-LKSEEQLWLSTAAKLDGSKPVRGGIPLVFPVF 67
Query: 83 GNCGSPE------LHGFARNKLWIIXXXXXXXXXXXXXGKTCVDLLLKPSEEDP---KCW 133
G + E HG ARN W V LKP +P K W
Sbjct: 68 GKNSTDEHLSKLPQHGLARNSTW-------EFLGQTKENPPTVQFGLKPEIANPELTKLW 120
Query: 134 PYSFEYRLRVMLAADGGLTLISRVRNINGKPFNFSFAYHTYLLVSDISEVRIEGLETLDY 193
P + L V L +D T I + K F++ +HTY + DI + L +
Sbjct: 121 PMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKL 180
Query: 194 LDNLRQRERFTEQGDAVTIESEMDRVY--LRSPNVIAVLDHERKRTFVLRKEGLSDVVVW 251
D L +E + ++ VT E D +Y + + I ++D + + L++ L D VVW
Sbjct: 181 YDQLL-KESYVDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHTLKRYNLPDTVVW 238
Query: 252 NPWEKRSKSMVDFGDEE-YKQMLCVDAAAVEKPITLKPGEEWTGRLQLLVVPSSFCSEQF 310
NPW ++S+ M DF + Y+QM+C++ V I+L PG++W QLL C E+
Sbjct: 239 NPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNA-YQLL------CKEEL 291
Query: 311 E 311
+
Sbjct: 292 K 292
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Glucose-6-Phosphate
pdb|2CIS|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Tagatose-6-Phosphate
Length = 297
Score = 125 bits (313), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 132/289 (45%), Gaps = 25/289 (8%)
Query: 25 QVVLRSPHGPSAKVSL--YGGQITSWRNEKGEELLFTSSKAIFKPPKAIRGGISTCFPQF 82
+VVL P + V + YG + SW+ K EE L+ S+ A K +RGGI FP F
Sbjct: 9 EVVLTHPADETTSVHILKYGATVYSWK-LKSEEQLWLSTAAKLDGSKPVRGGIPLVFPVF 67
Query: 83 GNCGSPE------LHGFARNKLWIIXXXXXXXXXXXXXGKTCVDLLLKPSEEDP---KCW 133
G + E HG ARN W V LKP +P K W
Sbjct: 68 GKNSTDEHLSKLPQHGLARNSTW-------EFLGQTKENPPTVQFGLKPEIANPELTKLW 120
Query: 134 PYSFEYRLRVMLAADGGLTLISRVRNINGKPFNFSFAYHTYLLVSDISEVRIEGLETLDY 193
P + L V L +D T I + K F++ +HTY + DI + L +
Sbjct: 121 PMDYLLILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKL 180
Query: 194 LDNLRQRERFTEQGDAVTIESEMDRVY--LRSPNVIAVLDHERKRTFVLRKEGLSDVVVW 251
D L +E + ++ VT E D +Y + + I ++D + + L++ L D VVW
Sbjct: 181 YDQLL-KESYVDKHPVVTFNQETDVIYQNVSAERAIQIVD-KGVQIHTLKRYNLPDTVVW 238
Query: 252 NPWEKRSKSMVDFGDEE-YKQMLCVDAAAVEKPITLKPGEEWTGRLQLL 299
NPW ++S+ M DF + Y+QM+C++ V I+L PG++W QLL
Sbjct: 239 NPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNA-YQLL 286
>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTA|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTB|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|C Chain C, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|D Chain D, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
Length = 309
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/263 (28%), Positives = 108/263 (41%), Gaps = 16/263 (6%)
Query: 23 IDQVVLRSPHGPSAKVSLYGGQITSWRNEKGEELLFTSSKAIFKPPKAIRGGISTCFPQF 82
+D +V+ P A +L G + SW+ EE+L+ S+ FK A+RGG+ C+P F
Sbjct: 41 LDLIVVDHPQ-VKASFALQGAHLLSWKPVGEEEVLWLSNNTPFKTGVALRGGVPICWPWF 99
Query: 83 GNCGSPEL--HGFARNKLWIIXXXXXXXXXXXXXGKTCVDLLLKPSEEDPKCWPYSFEYR 140
G L HGFARN W + + L+ SE K WP+ F
Sbjct: 100 GPAAQQGLPSHGFARNLPWAL------KAHNEDDNGVMLTFELQSSEATRKYWPHDFTLL 153
Query: 141 LRVMLAADGGLTLISRVRNINGKPFNFSFAYHTYLLVSDISEVRIEGLETLDYLDNLRQR 200
R + + L + F + A H+Y V DI+ V++ GL ++D +
Sbjct: 154 ARFKVGKTCEIELEAHGE------FATTSALHSYFNVGDIANVKVSGLGD-RFIDKVNDA 206
Query: 201 ERFTEQGDAVTIESEMDRVYLRSPNVIAVLDHERKRTFVLRKEGLSDVVVWNPWEKRSKS 260
+ T DRVYL + D RT + +VV WNP S S
Sbjct: 207 KEGVLTDGIQTFPDRTDRVYLNPEACSVIHDATLNRTIDVVHHHHLNVVGWNPGPALSVS 266
Query: 261 MVDFGDEEYKQMLCVDAAAVEKP 283
M D D+ YK +CV+ P
Sbjct: 267 MGDMPDDGYKTFVCVETVYATAP 289
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317
Length = 270
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 106/248 (42%), Gaps = 27/248 (10%)
Query: 35 SAKVSLYGGQITSWRNEKG-EELLFTSSKAIFKPPKAIRGGISTCFPQFGNCGSPELHGF 93
+AK+SL G Q+ SW+ + +++L+ S FK AIRGG+ C+P FG P HG
Sbjct: 32 TAKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPWFGGVKQPA-HGT 90
Query: 94 ARNKLWIIXXXXXXXXXXXXXGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADGGLTL 153
AR +LW + + DL + E ++ ++ LT
Sbjct: 91 ARIRLWQLSHYYISVHKVRLEFELFSDLNI-------------IEAKVSMVFTDKCHLTF 137
Query: 154 ISRVRNINGKPFNFSFAYHTYLLVSDISEVRIEGLETLDYLDNLRQRERFTEQGDAVTIE 213
+ A HTY + DI++V ++GL + +Q+E I
Sbjct: 138 THYGEE------SAQAALHTYFNIGDINQVEVQGLPETCFNSLNQQQENVPSPRH---IS 188
Query: 214 SEMDRVYLRSPNVIAVLDHERKRTFVLRKEGLSDVVVWNPWEKRSKSMVDFGDEEYKQML 273
+D +Y +LD RT L S V+WNPW K++ M + G Y++ML
Sbjct: 189 ENVDCIYSAENMQNQILDKSFNRTIALHHHNASQFVLWNPWHKKTSGMSETG---YQKML 245
Query: 274 CVDAAAVE 281
C++ A +
Sbjct: 246 CLETARIH 253
>pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
pdb|3K25|B Chain B, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
Length = 289
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 24/175 (13%)
Query: 36 AKVSLY---GGQITSWRNEKGEELLFTSSKAIFKPPKAIRGGISTCFP--------QFGN 84
A++SL GG +T W +G+ +L+ + P ++RGGI FP QF +
Sbjct: 23 ARLSLVPGRGGLVTEW-TVQGQPILYFDRERFQDPSLSVRGGIPILFPICGNLPQDQFNH 81
Query: 85 CGSP---ELHGFARNKLWIIXXXXXXXXXXXXXGKTCVDLLLKPSEEDPKCWPYSFEYRL 141
G + HGFAR+ W + +DL L ++ + +P++FE
Sbjct: 82 AGKSYRLKQHGFARDLPWEV-------IGQQTQDNARLDLRLSHNDATLEAFPFAFELVF 134
Query: 142 RVMLAADGGLTLISRVRNINGKPFNFSFAYHTYLLVSDISEVRIEGLETLDYLDN 196
L L + R+ N+ + FS +H Y + + + + DYLD
Sbjct: 135 SYQLQGH-SLRIEQRIANLGDQRXPFSLGFHPYFFCREKLGITL-AIPANDYLDQ 187
>pdb|3OS7|A Chain A, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|B Chain B, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|C Chain C, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|D Chain D, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
Length = 341
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 91/241 (37%), Gaps = 40/241 (16%)
Query: 90 LHGFARNKLWIIXXXXXXXXXXXXXGKTCVDLLLKPSEEDP--KCWPYSFEYRLRVMLAA 147
+HGF +N W + K V+++ ++E+ K + + F+++L L++
Sbjct: 108 IHGFIKNSKWTVHKKKIDQ------DKALVEVVFDFTKENEAYKYFSHEFQFKLSYELSS 161
Query: 148 DGGLTLISRVRNINGKPFNFSFAYHTYLLVSDISEVRIEGLETLDYLDNL-RQRERFTEQ 206
G L + V N++ + S YH+ V I +D +Q R
Sbjct: 162 KG-LKQTTSVVNLSSEEXPLSVGYHSAFNVPFIEGSEDSNCRVKISIDKFWKQDSRNLPT 220
Query: 207 GDAVTIESEMDRVYLRSPNVIAVLDHERKRTFVLR--------------KEGLSDVVVWN 252
G++ E + YL N +AV H + F L+ ++ + V
Sbjct: 221 GESFAPTGEQ-KEYLE--NGVAVASHPIESLFSLKDIDVNGKTFRGACIEDASKNTRVVY 277
Query: 253 PWEKRSKSMVDFGDEEYKQMLCVD--AAAVEKP-----------ITLKPGEEWTGRLQLL 299
K +V + D K+ C++ + + P TLKP E W+G +L
Sbjct: 278 EXSSEYKYLVIWNDXGDKKYACIEPQTSIINSPNVKLDRSVSGFKTLKPNESWSGVCKLY 337
Query: 300 V 300
+
Sbjct: 338 I 338
>pdb|3DCD|A Chain A, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33.
pdb|3DCD|B Chain B, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33
Length = 307
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 10/52 (19%)
Query: 91 HGFARNKLWIIXXXXXXXXXXXXXGKTCVDLLLKPSEEDPKCWPYSFEYRLR 142
HGFARN + + K + LLK +EE K +P+ FE+R+
Sbjct: 73 HGFARNADFEVENHT----------KESITFLLKDNEETRKVYPFKFEFRVN 114
>pdb|2FHQ|A Chain A, Crystal Structure Of General Stress Protein From
Bacteroides Thetaiotaomicron
pdb|2FHQ|B Chain B, Crystal Structure Of General Stress Protein From
Bacteroides Thetaiotaomicron
Length = 141
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 186 EGLETLDYLDNLRQRERFTEQGDAVTIESEMDRV 219
+ L+T+D+L N + F E+GD+V + E++ V
Sbjct: 57 DSLKTIDFLSNPKAGLCFQEKGDSVALXGEVEVV 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,208,400
Number of Sequences: 62578
Number of extensions: 359306
Number of successful extensions: 829
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 813
Number of HSP's gapped (non-prelim): 10
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)