Query 021411
Match_columns 312
No_of_seqs 219 out of 1235
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 02:45:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021411.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021411hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1594 Uncharacterized enzyme 100.0 3E-71 6.6E-76 474.6 30.7 305 1-309 1-305 (305)
2 cd09020 D-hex-6-P-epi_like D-h 100.0 8.6E-63 1.9E-67 445.8 30.4 265 26-299 2-269 (269)
3 COG0676 Uncharacterized enzyme 100.0 1.2E-53 2.6E-58 372.8 23.2 269 12-301 14-285 (287)
4 cd09025 Aldose_epim_Slr1438 Al 100.0 8.9E-49 1.9E-53 355.0 24.2 248 24-299 2-271 (271)
5 cd09024 Aldose_epim_lacX Aldos 100.0 1.1E-42 2.4E-47 317.8 26.8 244 26-300 1-288 (288)
6 cd09021 Aldose_epim_Ec_YphB al 100.0 1.2E-40 2.6E-45 302.3 24.2 229 36-299 2-273 (273)
7 PRK15172 putative aldose-1-epi 100.0 8.5E-38 1.8E-42 286.8 29.2 248 22-302 9-299 (300)
8 cd01081 Aldose_epim aldose 1-e 100.0 1.3E-37 2.9E-42 282.8 25.9 238 35-296 2-283 (284)
9 PF01263 Aldose_epim: Aldose 1 100.0 1.3E-37 2.9E-42 285.5 19.0 260 24-299 1-300 (300)
10 cd09022 Aldose_epim_Ec_YihR Al 100.0 7.7E-36 1.7E-40 272.2 27.0 236 34-298 1-284 (284)
11 cd09019 galactose_mutarotase_l 100.0 3.3E-34 7.1E-39 266.2 25.9 254 26-300 2-326 (326)
12 COG2017 GalM Galactose mutarot 100.0 2.8E-33 6.1E-38 257.3 26.5 253 20-302 9-307 (308)
13 PLN00194 aldose 1-epimerase; P 100.0 1.8E-31 3.9E-36 248.4 28.1 265 21-301 7-336 (337)
14 TIGR02636 galM_Leloir galactos 100.0 6E-31 1.3E-35 244.8 26.7 260 22-300 3-334 (335)
15 PRK11055 galM galactose-1-epim 100.0 2.8E-29 6.1E-34 233.6 28.1 261 21-301 7-340 (342)
16 PTZ00485 aldolase 1-epimerase; 100.0 4.9E-27 1.1E-31 219.6 28.5 272 13-302 4-370 (376)
17 KOG1604 Predicted mutarotase [ 99.9 1.7E-20 3.7E-25 167.8 24.2 262 18-302 15-351 (353)
18 cd09023 Aldose_epim_Ec_c4013 A 99.9 6.4E-21 1.4E-25 173.9 17.0 239 36-296 2-283 (284)
19 PF14486 DUF4432: Domain of un 99.4 4.9E-12 1.1E-16 116.0 15.9 253 21-300 2-302 (302)
20 cd09269 deoxyribose_mutarotase 99.4 1.8E-11 3.8E-16 111.7 16.0 188 87-298 61-292 (293)
21 PF14315 DUF4380: Domain of un 98.2 0.0015 3.2E-08 59.4 25.1 127 23-169 4-144 (274)
22 TIGR03593 yidC_nterm membrane 95.3 0.38 8.3E-06 45.5 12.9 118 23-166 73-203 (366)
23 PF14849 YidC_periplas: YidC p 94.8 0.6 1.3E-05 41.9 12.4 121 25-167 1-131 (270)
24 PRK01318 membrane protein inse 93.5 1.9 4.2E-05 42.8 13.8 121 25-167 40-170 (521)
25 PF09095 DUF1926: Domain of un 87.2 7.6 0.00016 35.3 10.6 129 20-167 4-176 (278)
26 COG0832 UreB Urea amidohydrola 75.7 4.1 8.8E-05 30.8 3.5 32 142-176 12-43 (106)
27 PRK13203 ureB urease subunit b 71.8 5.7 0.00012 30.2 3.5 31 143-176 13-43 (102)
28 cd00407 Urease_beta Urease bet 71.6 5.7 0.00012 30.2 3.5 31 143-176 13-43 (101)
29 TIGR00192 urease_beta urease, 71.5 6 0.00013 30.0 3.5 31 143-176 13-43 (101)
30 PF00699 Urease_beta: Urease b 69.6 5.5 0.00012 30.1 3.0 31 143-176 12-42 (100)
31 PRK13202 ureB urease subunit b 65.6 9.6 0.00021 29.1 3.6 31 143-176 13-44 (104)
32 PRK13201 ureB urease subunit b 65.2 8.8 0.00019 30.6 3.5 30 143-175 13-42 (136)
33 PRK13205 ureB urease subunit b 63.5 9.7 0.00021 31.1 3.5 31 143-176 13-43 (162)
34 PRK13204 ureB urease subunit b 62.9 10 0.00022 31.0 3.5 31 142-175 35-65 (159)
35 PRK13198 ureB urease subunit b 62.9 10 0.00022 31.0 3.5 41 132-175 29-70 (158)
36 PF02929 Bgal_small_N: Beta ga 61.0 65 0.0014 29.1 9.0 30 27-58 1-30 (276)
37 PF04744 Monooxygenase_B: Mono 56.7 14 0.00031 34.7 3.9 28 140-168 255-282 (381)
38 TIGR03079 CH4_NH3mon_ox_B meth 55.0 15 0.00033 34.5 3.7 28 140-168 274-301 (399)
39 PF05506 DUF756: Domain of unk 54.1 33 0.00072 25.1 4.9 38 134-174 6-43 (89)
40 PRK13192 bifunctional urease s 50.2 19 0.00041 31.0 3.3 42 132-176 110-152 (208)
41 PF12690 BsuPI: Intracellular 48.7 25 0.00055 25.6 3.4 20 150-169 1-20 (82)
42 PRK13986 urease subunit alpha; 46.2 23 0.00049 30.9 3.2 30 143-175 118-147 (225)
43 PF06045 Rhamnogal_lyase: Rham 41.4 2.4E+02 0.0051 24.5 12.5 31 25-57 17-48 (203)
44 PF00207 A2M: Alpha-2-macroglo 36.5 91 0.002 22.8 4.9 36 134-169 55-90 (92)
45 PRK10340 ebgA cryptic beta-D-g 33.5 6.7E+02 0.015 27.4 13.8 119 24-162 724-845 (1021)
46 PF06030 DUF916: Bacterial pro 33.5 1.3E+02 0.0028 23.7 5.5 33 144-176 22-54 (121)
47 PF00942 CBM_3: Cellulose bind 29.9 1.3E+02 0.0027 21.9 4.7 33 148-180 12-45 (86)
48 PF10633 NPCBM_assoc: NPCBM-as 27.5 84 0.0018 22.2 3.3 26 273-301 36-61 (78)
49 cd06535 CIDE_N_CAD CIDE_N doma 26.3 23 0.00049 25.6 0.0 22 271-294 56-77 (77)
50 PF06165 Glyco_transf_36: Glyc 23.8 2.7E+02 0.0058 21.2 5.7 33 137-169 50-83 (110)
51 PF14310 Fn3-like: Fibronectin 23.2 1E+02 0.0023 21.3 3.1 20 282-301 25-44 (71)
52 PF14796 AP3B1_C: Clathrin-ada 23.0 3.3E+02 0.007 22.3 6.2 19 283-301 123-141 (145)
53 PF04442 CtaG_Cox11: Cytochrom 23.0 1.7E+02 0.0037 24.1 4.6 50 117-168 36-86 (152)
54 COG2835 Uncharacterized conser 22.1 34 0.00073 23.5 0.3 14 69-82 36-49 (60)
55 PRK09525 lacZ beta-D-galactosi 21.2 1.1E+03 0.024 25.8 13.6 34 25-60 750-783 (1027)
56 PF14100 PmoA: Methane oxygena 21.0 95 0.0021 28.1 3.0 37 271-307 224-261 (271)
No 1
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-71 Score=474.58 Aligned_cols=305 Identities=68% Similarity=1.162 Sum_probs=289.1
Q ss_pred CCCCCCccccccceEEeecCCCceEEEEeCCCCCEEEEEccCcEEEEEEeCCCeeEEEeCCCCccCCCCcccccceEEcC
Q 021411 1 MGHSAAVWDYRAAIEIAKDWNGIDQVVLRSPHGPSAKVSLYGGQITSWRNEKGEELLFTSSKAIFKPPKAIRGGISTCFP 80 (312)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~n~~g~~a~v~~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~irgG~p~lfP 80 (312)
|+++...+..+..+++.++.+|++.|.|++++|.+|+|+++||+|+||+...|+|+||.+..+.++..+|||||+|+|||
T Consensus 1 ~~~~~~~~~~~~~~~~~k~~~g~~~ivL~~p~g~taev~L~Gg~V~SWK~~~geElLf~S~kA~f~ppKpIRGGIP~~FP 80 (305)
T KOG1594|consen 1 MGRSSAMASERMPVELAKGRNGLDKIVLTDPRGSTAEVYLYGGQVVSWKNENGEELLFVSTKAIFKPPKPIRGGIPICFP 80 (305)
T ss_pred CccccccccccccceeecccCCCceEEEeCCCCCeEEEEEeccEEEEeecCCCceeEEechhhhcCCCCcccCCcceEee
Confidence 78888888899999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred cCCCCCCCCCceeeecCCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCCcEEEEEEEEeC
Q 021411 81 QFGNCGSPELHGFARNKLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADGGLTLISRVRNI 160 (312)
Q Consensus 81 ~~gr~~~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~ 160 (312)
+||..+.+++|||||++.|+++....+.| +-+.+.|.|.|.+++++++.|||+|++++++.|. ++.|+++..|+|+
T Consensus 81 QFG~~g~l~qHGFaRn~~W~v~~~p~~lp---~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~-~g~Lt~~~rV~Nt 156 (305)
T KOG1594|consen 81 QFGNFGSLPQHGFARNRFWEVENNPPPLP---SLGKATVDLILKSSEDDLKIWPHSFELRLRVSLG-DGELTLTSRVRNT 156 (305)
T ss_pred ccCCCCcccccccccceeeEeccCCCCCC---cCCceeEEEEecCChhhhhhCCcceEEEEEEEEc-CCceEEEEEeecC
Confidence 99999999999999999999987664322 2345889999999999999999999999999999 8999999999999
Q ss_pred CCCceeeeeeccceeecCCcCeeEEEcCCCCceeeccccccceeecCceeeecCCcceEecCCCCeEEEEeCCCCcEEEE
Q 021411 161 NGKPFNFSFAYHTYLLVSDISEVRIEGLETLDYLDNLRQRERFTEQGDAVTIESEMDRVYLRSPNVIAVLDHERKRTFVL 240 (312)
Q Consensus 161 ~~~~~pf~~g~HpYF~~~~~~~~~~~~l~~~~~~d~l~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l~d~~~~~~i~i 240 (312)
+++|+.|++++|+||+++++.+++++|+++..|+|++....+++++.++++|.+++|++|.+.|.++.|.|...+|+|.|
T Consensus 157 d~KpFsF~~alHtYf~vsdisevrveGL~tldylD~~~~~~~~tE~~davTF~~e~DrvYl~tp~e~aI~dh~~krti~l 236 (305)
T KOG1594|consen 157 DSKPFSFSFALHTYFRVSDISEVRVEGLETLDYLDNLKNRERFTEQRDAVTFNSEVDRVYLNTPTELAIFDHEKKRTIVL 236 (305)
T ss_pred CCCceEEEeEeeeeEeecccceEEEeccccccccccccchhhccccCceEeeccceeeEEecCCceEEEEEeccccEEEE
Confidence 99999999999999999999999999999999999988777788889999999999999999999999999999999999
Q ss_pred EeeCCCCEEEeCCccccccccCCCCCCCCCceEEecceeeCCCeEeCCCCEEEEEEEEEEEecCCCcCC
Q 021411 241 RKEGLSDVVVWNPWEKRSKSMVDFGDEEYKQMLCVDAAAVEKPITLKPGEEWTGRLQLLVVPSSFCSEQ 309 (312)
Q Consensus 241 ~~~~~~~~vvw~P~~~~~~~~~d~~~~~~~~~vCvEP~~~~~~~~L~pGe~~~~~~~i~~~~~~~~~~~ 309 (312)
...|+|+.||||||.+++++|+||++++|+.|||||++.+..+++|+||++|++.+.+++...+|||+|
T Consensus 237 ~k~g~pDaVVWNPW~kksk~maD~gde~Y~~mlCVe~a~v~~pI~L~PG~eW~g~q~Lsiv~s~~~s~q 305 (305)
T KOG1594|consen 237 KKEGLPDAVVWNPWDKKSKTMADFGDEDYKHMLCVESAAVESPITLKPGEEWKGRQLLSIVPSSYCSGQ 305 (305)
T ss_pred eccCCCceEEeChhHhhhhhhhhccccccceeEEecccccCCceeecCCccceeEEEEEEeecccccCC
Confidence 999999999999999999999999999999999999999989999999999999999999999999987
No 2
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
Probab=100.00 E-value=8.6e-63 Score=445.80 Aligned_cols=265 Identities=43% Similarity=0.748 Sum_probs=241.7
Q ss_pred EEEeCCCCCEEEEEccCcEEEEEEeCCCeeEEEeCCCCccCCCCcccccceEEcCcCCCCC---CCCCceeeecCCcEEe
Q 021411 26 VVLRSPHGPSAKVSLYGGQITSWRNEKGEELLFTSSKAIFKPPKAIRGGISTCFPQFGNCG---SPELHGFARNKLWIID 102 (312)
Q Consensus 26 ~~L~n~~g~~a~v~~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~irgG~p~lfP~~gr~~---~~~~HGfar~~~W~v~ 102 (312)
++|+|+. ++|+|..+||+|+||+.++++|+||.++.+.|+.++++|||+|+|||||||+. ++++|||||++.|+|+
T Consensus 2 i~i~~~~-~~a~i~~~Ga~l~s~~~~~~~~~L~~s~~~~~~~~~~irgGiPvlfP~~g~~~~~~~~~~HGfaR~~~W~l~ 80 (269)
T cd09020 2 IVLDHPG-ASAEIALQGAQVLSWKPKGGQDLLWLSPQAPFDGGKAIRGGIPVCWPWFGPHGPNADLPAHGFARTRLWELL 80 (269)
T ss_pred EEEeCCC-ceEEEECCCcEEEEEeCCCCceeEEECCccccCCCCcccCCCeEeeeccCCCCCCCCCCcceeeecCceEEe
Confidence 6789996 99999999999999998766999999999899999999999999999999986 6899999999999998
Q ss_pred cCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCCcEEEEEEEEeCCCCceeeeeeccceeecCCcCe
Q 021411 103 DNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADGGLTLISRVRNINGKPFNFSFAYHTYLLVSDISE 182 (312)
Q Consensus 103 ~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~~~~~~~ 182 (312)
+.+. +++..+++|.+.++++++++|||+|+++++|+|. +++|+++++|+|+|+++|||++|+||||+++++.+
T Consensus 81 ~~~~------~~~~~~l~l~l~~~~~~~~~~P~~f~l~~~~~L~-~~~L~~~l~v~N~g~~~~p~~~g~HpYf~v~d~~~ 153 (269)
T cd09020 81 EVSE------DEDGVTVSLELDDTDETRAIWPHAFELRLTVTLG-FDTLELELTVTNTGDKPFSFTAALHTYFRVSDIEQ 153 (269)
T ss_pred eeec------CCCceEEEEEeCCChhhhhcCCCceEEEEEEEEc-CCcEEEEEEEECCCCCCeEehhccCeeEecCCccc
Confidence 7652 2346789999988888889999999999999999 89999999999999999999999999999999999
Q ss_pred eEEEcCCCCceeeccccccceeecCceeeecCCcceEecCCCCeEEEEeCCCCcEEEEEeeCCCCEEEeCCccccccccC
Q 021411 183 VRIEGLETLDYLDNLRQRERFTEQGDAVTIESEMDRVYLRSPNVIAVLDHERKRTFVLRKEGLSDVVVWNPWEKRSKSMV 262 (312)
Q Consensus 183 ~~~~~l~~~~~~d~l~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l~d~~~~~~i~i~~~~~~~~vvw~P~~~~~~~~~ 262 (312)
+.|.++.+..|+|++...... ...+.+.|.+++||+|.+.+..+.|.|+..+++|+|+.++++++||||||.+++++|+
T Consensus 154 ~~v~gl~~~~y~d~~~~~~~~-~~~~~~~~~~~~Drvy~~~~~~~~i~d~~~~~~i~i~~~~~~~~VVWNP~~~~~~~~~ 232 (269)
T cd09020 154 VRVEGLEGATYLDKLTDQREK-VQGGAVTFDGEVDRVYLNTPAPLTIDDPAWGRRIRIEKSGSPSAVVWNPWIEKAARMA 232 (269)
T ss_pred cEEeCCCCCceEEcCCCcccc-ccCCceEECCccceEEeCCCCCEEEEcCCCCcEEEEEecCCCCEEEeCcchhhccccc
Confidence 999999999999987643322 2346788889999999988878899998889999999999999999999999999999
Q ss_pred CCCCCCCCceEEecceeeCCCeEeCCCCEEEEEEEEE
Q 021411 263 DFGDEEYKQMLCVDAAAVEKPITLKPGEEWTGRLQLL 299 (312)
Q Consensus 263 d~~~~~~~~~vCvEP~~~~~~~~L~pGe~~~~~~~i~ 299 (312)
||++++|++||||||+++.+.++|+|||+|+++++|+
T Consensus 233 d~~~~~~~~fvCvEp~~~~~~~~L~pG~~~~~~~~i~ 269 (269)
T cd09020 233 DFPDDGYRRMVCVEAANVADPVTLAPGESHTLSQTIS 269 (269)
T ss_pred cCCccccceEEEECeeecCCCEEECCCCCEEEEEEEC
Confidence 9999999999999999988899999999999999884
No 3
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-53 Score=372.81 Aligned_cols=269 Identities=34% Similarity=0.530 Sum_probs=231.2
Q ss_pred cceEEeecCCCceEEEEeCCCCCEEEEEccCcEEEEEEeCCCeeEEEeCCCCccCCCCcccccceEEcCcCCCCCC--CC
Q 021411 12 AAIEIAKDWNGIDQVVLRSPHGPSAKVSLYGGQITSWRNEKGEELLFTSSKAIFKPPKAIRGGISTCFPQFGNCGS--PE 89 (312)
Q Consensus 12 ~~~~~~~~~~~~~~~~L~n~~g~~a~v~~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~irgG~p~lfP~~gr~~~--~~ 89 (312)
+.+..++ .+.++.+.+.+.. .+|.|+.+||+|.||++++++|+||.++.+-++.+++|||||||||||||+... +|
T Consensus 14 ~~~~~~~-~~~~~~~~~~h~~-~~a~islqGAqLLs~qP~ge~evLWLS~~~p~~~g~aIRGGIPICwPWFG~~~~~~~P 91 (287)
T COG0676 14 PELSLVK-LDQLPLIVVDHPL-GSAAISLQGAQLLSWQPKGEEEVLWLSSNAPFKGGAAIRGGIPICWPWFGPLAQQGLP 91 (287)
T ss_pred CcceeEe-eeccCceEeeccc-ceeEEecCCceEEEecCCCCCceEEecccCccCCCCcccCCCcEEEeccCccCCCCCC
Confidence 4444444 6778899999998 799999999999999998778999999999999999999999999999999875 69
Q ss_pred CceeeecCCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCCcEEEEEEEEeCCCCceeeee
Q 021411 90 LHGFARNKLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADGGLTLISRVRNINGKPFNFSF 169 (312)
Q Consensus 90 ~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~~~~~~pf~~ 169 (312)
.|||||+++|++.+... +++.+.++|.|..+.+ |+.|+++++++|. +.|+++++..|..+ |+.
T Consensus 92 aHG~AR~~~W~l~~~~~------~~~~v~v~f~L~~~~~-----p~~~~lr~~~~~g--~~le~~l~~~~~~s----~~~ 154 (287)
T COG0676 92 AHGFARNRPWKLLEHDE------DEDGVRVTFGLDLEDE-----PHDFTLRLTFRFG--ETLELELESYGEES----FQA 154 (287)
T ss_pred ccchhhcCceeeeehhc------ccCceEEEEEeCCCcc-----ccceEEEEEeecc--ceEEEEEEecChhH----HHH
Confidence 99999999999998873 4567789999986543 9999999999998 78999999988876 999
Q ss_pred eccceeecCCcCeeEEEcCCCCceeeccccccceeecCceeeecCCcceEecCCCCeEEEEeCCCCcEEEEEeeCCCCEE
Q 021411 170 AYHTYLLVSDISEVRIEGLETLDYLDNLRQRERFTEQGDAVTIESEMDRVYLRSPNVIAVLDHERKRTFVLRKEGLSDVV 249 (312)
Q Consensus 170 g~HpYF~~~~~~~~~~~~l~~~~~~d~l~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l~d~~~~~~i~i~~~~~~~~v 249 (312)
++||||+++|+.++.|+||.+..+.+.+. .+......+...|.+++|++|++.+....|.|+...|.|+|...+...+|
T Consensus 155 AlHtYF~VgDi~qv~V~GL~~~~~~~~~~-~~~~v~~~g~~~~~~~~DriY~~~~~~~~I~D~~~~R~I~l~~~~~~~~V 233 (287)
T COG0676 155 ALHTYFRVGDIEQVEVSGLGGVCIDKVLN-AEEEVTQHGIVTFPGETDRIYLNPEPCSVIVDPALNRIITLEHQGHSSTV 233 (287)
T ss_pred hhcceEEecchhheEeccCCceehhhhhh-ceeeccCCCceeeCCCccEEEEcCCCceEEecCcceEEEEEEecCCCCeE
Confidence 99999999999999999998755444333 23222244558899999999999878889999988999999999999999
Q ss_pred EeCCccccccccCCCCCCCCCceEEecceeeC-CCeEeCCCCEEEEEEEEEEE
Q 021411 250 VWNPWEKRSKSMVDFGDEEYKQMLCVDAAAVE-KPITLKPGEEWTGRLQLLVV 301 (312)
Q Consensus 250 vw~P~~~~~~~~~d~~~~~~~~~vCvEP~~~~-~~~~L~pGe~~~~~~~i~~~ 301 (312)
|||||.+++..|+||++++|+.||||||+... ....++|+ ..+..++|++.
T Consensus 234 vWNP~~~~s~~M~d~~d~gyq~mlCvEta~~~~~l~~~~~~-~~~l~~~i~~~ 285 (287)
T COG0676 234 VWNPGHAKSSSMADMPDDGYQTMLCVETARVGPDLKVGEPG-PVRLALKISVA 285 (287)
T ss_pred EECCCccccccccccccccceEEEEEeecccCcchhhcCCc-ceeeeeeeecc
Confidence 99999999999999999999999999999874 56677777 77777777654
No 4
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=8.9e-49 Score=354.99 Aligned_cols=248 Identities=28% Similarity=0.489 Sum_probs=207.9
Q ss_pred eEEEEeCCC-CCEEEEE-ccCcEEEEEEeCCCeeEEEeCCCCccCCCCcccccceEEcCcCCCCC-----------CCCC
Q 021411 24 DQVVLRSPH-GPSAKVS-LYGGQITSWRNEKGEELLFTSSKAIFKPPKAIRGGISTCFPQFGNCG-----------SPEL 90 (312)
Q Consensus 24 ~~~~L~n~~-g~~a~v~-~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~irgG~p~lfP~~gr~~-----------~~~~ 90 (312)
+.++|+++. +++++|. ++||+|+||+. +|+|+||+++.+.++..+++|||+|+||||+||+. ++++
T Consensus 2 ~~~~l~~~~~~~~~~v~p~~Ga~l~s~~~-~g~~~l~~~~~~~~~~~~~~~gG~p~l~P~~gri~~g~~~~~g~~~~lp~ 80 (271)
T cd09025 2 PTYELSDEEAGSRLRVVPERGGLITRWTV-QGRELLYLDEERFADPAKSVRGGIPILFPICGNLPDDGYPLAGQEYTLKQ 80 (271)
T ss_pred cEEEEEcCCCceEEEEecccCCEEEEEec-CCEEEEecCChHHhccccccCCCCcEEECccCCCCCCeEEECCEEEeccC
Confidence 578888874 6899888 99999999997 47999999998888888899999999999999984 5799
Q ss_pred ceeeecCCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCCcEEEEEEEEeCCCCceeeeee
Q 021411 91 HGFARNKLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADGGLTLISRVRNINGKPFNFSFA 170 (312)
Q Consensus 91 HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~~~~~~pf~~g 170 (312)
|||+|+++|++++.+ +..+++|++.+.++++++|||+|+++++|+|. +++|+++++|+|+++++|||++|
T Consensus 81 HGf~r~~~W~v~~~~---------~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~-~~~L~i~~~v~N~~~~~~p~~~g 150 (271)
T cd09025 81 HGFARDLPWEVELLG---------DGAGLTLTLRDNEATRAVYPFDFELELTYRLA-GNTLEIAQRVHNLGDQPMPFSFG 150 (271)
T ss_pred cccccCCCEEEEecC---------CCcEEEEEEeCCHHHHhhCCceEEEEEEEEEe-CCEEEEEEEEEECCCCcEEEEEe
Confidence 999999999998643 14578898887766778999999999999999 89999999999999999999999
Q ss_pred ccceeecCCcCeeEEEcCCCCceeeccccccceeecCceeeecCCcceEecCCCCeEEEEeCCCCcEEEEEeeC-CCCEE
Q 021411 171 YHTYLLVSDISEVRIEGLETLDYLDNLRQRERFTEQGDAVTIESEMDRVYLRSPNVIAVLDHERKRTFVLRKEG-LSDVV 249 (312)
Q Consensus 171 ~HpYF~~~~~~~~~~~~l~~~~~~d~l~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l~d~~~~~~i~i~~~~-~~~~v 249 (312)
+||||++++..++.+.++. ..|+|+.+...... ......+..++|++|.+++ .++|.++..+++|+|..++ ++++|
T Consensus 151 ~HpYF~~~~~~~~~l~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~D~~y~~~~-~~~l~~~~~~~~i~l~~~~~~~~~v 227 (271)
T cd09025 151 FHPYFAVPDKAKLSLDLPP-TRCFDQKTDEEANT-PGQFDETEEGVDLLFRPLG-PASLTDGARGLKITLDHDEPFSNLV 227 (271)
T ss_pred cCceeeCCchhccEEEcCH-HHHhhhccCCccCC-cccccccccccchhhccCC-ceEEEecCCCEEEEEecCCCcceEE
Confidence 9999999988888888763 56666654332211 1233445668999998875 7888888778999999764 89999
Q ss_pred EeCCccccccccCCCCCCCCCceEEecceee--------CCCeEeCCCCEEEEEEEEE
Q 021411 250 VWNPWEKRSKSMVDFGDEEYKQMLCVDAAAV--------EKPITLKPGEEWTGRLQLL 299 (312)
Q Consensus 250 vw~P~~~~~~~~~d~~~~~~~~~vCvEP~~~--------~~~~~L~pGe~~~~~~~i~ 299 (312)
||||. +++|||||||++ .++++|+|||+++++++|.
T Consensus 228 vw~p~--------------~~~~vCvEp~t~~~nA~n~~~~~~~L~PGe~~~~~~~i~ 271 (271)
T cd09025 228 VWTDK--------------GKDFVCLEPWTGPRNALNTGERLLLLPPGETEEASVRIQ 271 (271)
T ss_pred EecCC--------------CCcEEEEecCCCCccccCcCCccEEECCCCEEEEEEEEC
Confidence 99985 368999999974 2688999999999999873
No 5
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.1e-42 Score=317.83 Aligned_cols=244 Identities=19% Similarity=0.319 Sum_probs=189.1
Q ss_pred EEEeCCCCCEEEEEccCcEEEEEEeC-CCeeEEEeCCCCccCCCCcccccceEEcCcCCCCC-----------CCCCcee
Q 021411 26 VVLRSPHGPSAKVSLYGGQITSWRNE-KGEELLFTSSKAIFKPPKAIRGGISTCFPQFGNCG-----------SPELHGF 93 (312)
Q Consensus 26 ~~L~n~~g~~a~v~~~Ga~l~s~~~~-~g~evL~~~~~~~~~~~~~irgG~p~lfP~~gr~~-----------~~~~HGf 93 (312)
++|+|++ ++|+|..+||+|+||+.+ +|+|+||+.+.++|. |++|+||||+||+. ++++|||
T Consensus 1 ~~l~n~~-~~a~v~~~Ga~l~s~~~~~~g~e~l~~~~~~~~~------~~~p~l~P~~gri~~g~~~~~g~~~~l~~HGf 73 (288)
T cd09024 1 ITLENEF-LTVTISEHGAELTSIKDKKTGREYLWQGDPAYWG------RHAPILFPIVGRLKDDTYTIDGKTYPMPQHGF 73 (288)
T ss_pred CEEECCc-EEEEEeccCcEEEEEEeCCCCCEEEeCCChHHcC------CCCCEEEeeccCCCCCeEEECCEEeeccCCCC
Confidence 5799998 999999999999999985 589999998876663 36899999999984 5799999
Q ss_pred eecCCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCCcEEEEEEEEeCCCCceeeeeeccc
Q 021411 94 ARNKLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADGGLTLISRVRNINGKPFNFSFAYHT 173 (312)
Q Consensus 94 ar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~~~~~~pf~~g~Hp 173 (312)
+|++.|+|++.+ ..+++|++.++++++.+|||+|+++++|+|. +++|+++++++|+++++|||++|+||
T Consensus 74 ~r~~~w~v~~~~----------~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~-~~~L~i~~~v~N~~~~~~p~~~g~Hp 142 (288)
T cd09024 74 ARDMEFEVVEQS----------DDSVTFELTDNEETLKVYPFDFELRVTYTLE-GNTLKVTYEVKNPDDKTMPFSIGGHP 142 (288)
T ss_pred cccCceEEEEcc----------CCEEEEEEccCcchhhcCCeEEEEEEEEEEe-CCEEEEEEEEEcCCCCceEEEEeCCc
Confidence 999999998766 3578899988777778999999999999999 89999999999999999999999999
Q ss_pred eeecCCcC-----e--eEEEcCC-CCce-eec---ccccccee-ecCceeeecCC-c-ce--EecCCC-CeEEEEeCCCC
Q 021411 174 YLLVSDIS-----E--VRIEGLE-TLDY-LDN---LRQRERFT-EQGDAVTIESE-M-DR--VYLRSP-NVIAVLDHERK 235 (312)
Q Consensus 174 YF~~~~~~-----~--~~~~~l~-~~~~-~d~---l~~~~~~~-~~~~~~~~~~~-~-D~--~y~~~~-~~~~l~d~~~~ 235 (312)
||++++.. + +.+.... ...+ ++. ++.+.... .....+.+... + |+ +|.++. +.++|.++..+
T Consensus 143 YF~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 222 (288)
T cd09024 143 AFNCPLDEGEKFEDYYLEFEPKEELERIPLVGPLGLLGEKKPLLLNEGTLPLTHDLFDDDALIFDNLKSREVTLKSKKTG 222 (288)
T ss_pred eEECCCCCCCcccceEEEECCcccceEEecCCccccccccccccCCCCeecCCHHHhcCCEEEEcCCCccEEEEEcCCCC
Confidence 99998642 3 3443211 1122 121 23222111 11222333322 2 33 344443 57888887778
Q ss_pred cEEEEEeeCCCCEEEeCCccccccccCCCCCCCCCceEEecceee--------------CCCeEeCCCCEEEEEEEEEE
Q 021411 236 RTFVLRKEGLSDVVVWNPWEKRSKSMVDFGDEEYKQMLCVDAAAV--------------EKPITLKPGEEWTGRLQLLV 300 (312)
Q Consensus 236 ~~i~i~~~~~~~~vvw~P~~~~~~~~~d~~~~~~~~~vCvEP~~~--------------~~~~~L~pGe~~~~~~~i~~ 300 (312)
+.|+|..+++++++||+|... ++|||||||++ .++++|+|||+++.+++|++
T Consensus 223 ~~v~l~~~~~~~l~vwt~~~~-------------~~~iciEP~t~~~da~~~~~~~~~~~gl~~L~PGe~~~~~~~i~~ 288 (288)
T cd09024 223 HGVTVDFDDFPYLGIWSKPNG-------------APFVCIEPWYGLADSVGFDGDLEDKEGINKLEPGESFEASYSITI 288 (288)
T ss_pred CEEEEEeCCCCEEEEeCCCCC-------------CCEEEEcCCCCCCCcCCCCccccccCCCEEeCCCCEEEEEEEEEC
Confidence 899999877999999998521 58999999996 16789999999999999874
No 6
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.2e-40 Score=302.30 Aligned_cols=229 Identities=18% Similarity=0.293 Sum_probs=179.4
Q ss_pred EEEE-ccCcEEEEEEeCC-CeeEEEeCCCCccCCCCcccccceEEcCcCCCCC--------------------CCCCcee
Q 021411 36 AKVS-LYGGQITSWRNEK-GEELLFTSSKAIFKPPKAIRGGISTCFPQFGNCG--------------------SPELHGF 93 (312)
Q Consensus 36 a~v~-~~Ga~l~s~~~~~-g~evL~~~~~~~~~~~~~irgG~p~lfP~~gr~~--------------------~~~~HGf 93 (312)
+++. ..||.|+||+..+ |.++||+.+++.. .+.++|+|+||||+||+. ++++|||
T Consensus 2 ~~~v~~~Ga~l~sl~~~~~~~~~l~~~~~~~~---~~~~~~~p~LfP~~gRi~~~~~~~~g~~y~l~~n~~~~~~~~HG~ 78 (273)
T cd09021 2 LVLAPELGGSIAALTSRGDPTPLLRPADPDAA---DALAMACFPLVPFSNRIRGGRFLFAGREVALPPNTADEPHPLHGD 78 (273)
T ss_pred ceeCCCCCceEEEEEeCCCcceeeecCCcccc---CcccccCceEeccCCcccCCcEeECCEEEecCCCCCCCccCcccc
Confidence 4444 8999999999853 5899998776542 234779999999999983 2379999
Q ss_pred eecCCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCCcEEEEEEEEeCCCCceeeeeeccc
Q 021411 94 ARNKLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADGGLTLISRVRNINGKPFNFSFAYHT 173 (312)
Q Consensus 94 ar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~~~~~~pf~~g~Hp 173 (312)
+|++.|+|++.+ ..+++|++...++. +||+|+++++|+|. +++|+++++++|+++++|||++|+||
T Consensus 79 ar~~~w~v~~~~----------~~~v~l~l~~~~~~---~P~~~~~~~~y~L~-~~~L~i~~~~~N~~~~~~~~~~g~H~ 144 (273)
T cd09021 79 GWRRPWQVVAAS----------ADSAELQLDHEADD---PPWAYRAEQRFHLA-GDGLSITLSVTNRGDRPMPAGLGFHP 144 (273)
T ss_pred hhcCceEEEecc----------CCeEEEEEecCCCC---CCEeEEEEEEEEEc-CCCEEEEEEEEECCCCCceeeeecCc
Confidence 999999998765 24677777655432 49999999999998 89999999999999999999999999
Q ss_pred eeecCCcCeeEEEcCCCCcee---eccccccceeecCceeee-------cCCcceEecCCCCeEEEEeCCCCcEEEEEee
Q 021411 174 YLLVSDISEVRIEGLETLDYL---DNLRQRERFTEQGDAVTI-------ESEMDRVYLRSPNVIAVLDHERKRTFVLRKE 243 (312)
Q Consensus 174 YF~~~~~~~~~~~~l~~~~~~---d~l~~~~~~~~~~~~~~~-------~~~~D~~y~~~~~~~~l~d~~~~~~i~i~~~ 243 (312)
||++++...+++.+.. .+. |.++++..... ..++| ...+|++|......+.+.++.++++|+|..+
T Consensus 145 YF~~~~~~~l~v~~~~--~~~~d~~~lp~~~~~~~--~~~df~~~~~l~~~~~D~~f~~~~~~~~l~~~~~~~~i~v~~~ 220 (273)
T cd09021 145 YFPRTPDTRLQADADG--VWLEDEDHLPTGLRPHP--PDWDFSQPRPLPDRWIDNCFTGWDGAALIWPPERGLALTIEAD 220 (273)
T ss_pred cEecCCCCEEEEecce--EEecCCCcCCCcccCCC--cchhhcCCCcCCcccccccccCCCcceEEecCCCCcEEEEecC
Confidence 9999986677777541 222 55665432111 11222 2479999987656677888888899999998
Q ss_pred C-CCCEEEeCCccccccccCCCCCCCCCceEEecceee----------CCCeEeCCCCEEEEEEEEE
Q 021411 244 G-LSDVVVWNPWEKRSKSMVDFGDEEYKQMLCVDAAAV----------EKPITLKPGEEWTGRLQLL 299 (312)
Q Consensus 244 ~-~~~~vvw~P~~~~~~~~~d~~~~~~~~~vCvEP~~~----------~~~~~L~pGe~~~~~~~i~ 299 (312)
+ ++++|||||+. ++|||||||++ .+.++|+|||+++.+++|+
T Consensus 221 ~~~~~~vvwtp~~--------------~~~vCvEP~~~~~da~~~~~~~~~~~L~pge~~~~~~~i~ 273 (273)
T cd09021 221 APFSHLVVYRPPG--------------EDFFCLEPVSHAPDAHHGPGDPGLRVLAPGESLSLSMRIT 273 (273)
T ss_pred CCCCEEEEEcCCC--------------CCeEEEccccCCCCccCCcCCCCcEEeCCCCcEEEEEEEC
Confidence 8 99999999862 58999999974 1358999999999999874
No 7
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=100.00 E-value=8.5e-38 Score=286.81 Aligned_cols=248 Identities=14% Similarity=0.189 Sum_probs=189.3
Q ss_pred CceEEEEeCCCCCEEEEEccCcEEEEEEeCCCeeEEEeCCCCccCCCCcccccceEEcCcCCCCC---------------
Q 021411 22 GIDQVVLRSPHGPSAKVSLYGGQITSWRNEKGEELLFTSSKAIFKPPKAIRGGISTCFPQFGNCG--------------- 86 (312)
Q Consensus 22 ~~~~~~L~n~~g~~a~v~~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~irgG~p~lfP~~gr~~--------------- 86 (312)
.-.+++|+|+. ++|+|..+||.|++|+.. |.++++..+.+.+. +..+| ++|+||.||+.
T Consensus 9 ~~~~~~l~~~~-~~v~i~~~Ga~i~~l~~~-~~~vv~~~~~~~~~---~~~~g-~~L~P~anRI~~g~f~~~G~~y~L~~ 82 (300)
T PRK15172 9 SGQTISLAAGD-YQATIVTVGAGLAELTFQ-GRHLVIPHKPEEMP---LAHLG-KVLIPWPNRIANGCYRYQGQEYQLPI 82 (300)
T ss_pred CcCEEEEeCCC-EEEEEecCCcEEEEEEEC-CEEEEecCCccccC---ccccc-cEecccCCeecCCEEEECCEEEECCC
Confidence 45679999998 999999999999999984 78888776544332 22333 79999999983
Q ss_pred -----CCCCceeeecCCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCCcEEEEEEEEeCC
Q 021411 87 -----SPELHGFARNKLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADGGLTLISRVRNIN 161 (312)
Q Consensus 87 -----~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~~ 161 (312)
+.++||+++.+.|+|.... ..+++|++...+ ..+|||+|+++++|+|.++++|+|+++++|++
T Consensus 83 N~~~~~~~lHG~~~~~~W~v~~~~----------~~~v~l~~~~~~--~~gyP~~~~~~v~y~L~~~~~L~i~~~~~n~~ 150 (300)
T PRK15172 83 NEHVSKAAIHGLLAWRDWQISELT----------ATSVTLTAFLPP--SYGYPFMLASQVIYSLDAATGLSVEIASQNIG 150 (300)
T ss_pred CCCCCCcccCCCccCceEEEEEec----------CCEEEEEEEcCC--CCCCCEEEEEEEEEEEccCCeEEEEEEEEECC
Confidence 2349999999999997655 236777776543 36899999999999997247999999999999
Q ss_pred CCceeeeeeccceeecCC--cCeeEEEcCCCCcee----eccccccceeecCceeeec-------CCcceEecCCCC--e
Q 021411 162 GKPFNFSFAYHTYLLVSD--ISEVRIEGLETLDYL----DNLRQRERFTEQGDAVTIE-------SEMDRVYLRSPN--V 226 (312)
Q Consensus 162 ~~~~pf~~g~HpYF~~~~--~~~~~~~~l~~~~~~----d~l~~~~~~~~~~~~~~~~-------~~~D~~y~~~~~--~ 226 (312)
+++|||++|+||||+++. +.+..+.- +...++ +.+|++.... .+..++|. .++|++|..+.. .
T Consensus 151 ~~~~P~~~g~HpYFnl~~~~~~~~~L~~-~a~~~~~~d~~~iPtg~~~~-~~~~~df~~~~~l~~~~~D~~f~~~~~~~~ 228 (300)
T PRK15172 151 DVPAPYGVGIHPYLTCNLTSVDEYLLQL-PANQVLAVDEHANPTTLHHV-DELDLDFSQAKKIAATKIDHTFKTANDLWE 228 (300)
T ss_pred CCceeeEEecCceEecCCCChhceEEEE-eCCeEEecCCCcCCCccccC-CCCCcCCCCCeECCCCCccCEEEcCCCceE
Confidence 999999999999999973 44544442 223332 3466643211 11223332 269999987754 6
Q ss_pred EEEEeCCCCcEEEEEeeCCCCEEEeCCccccccccCCCCCCCCCceEEecceeeC--------CCeEeCCCCEEEEEEEE
Q 021411 227 IAVLDHERKRTFVLRKEGLSDVVVWNPWEKRSKSMVDFGDEEYKQMLCVDAAAVE--------KPITLKPGEEWTGRLQL 298 (312)
Q Consensus 227 ~~l~d~~~~~~i~i~~~~~~~~vvw~P~~~~~~~~~d~~~~~~~~~vCvEP~~~~--------~~~~L~pGe~~~~~~~i 298 (312)
++|.++.++++|++.++ .+.+|||+|... .+.+||||||+.. +.++|+|||+++.+++|
T Consensus 229 ~~l~~~~~g~~l~~~~~-~~~~~vyt~~~~------------~~~~~ciEp~t~p~dA~n~~~g~~~L~pge~~~~~~~i 295 (300)
T PRK15172 229 VRITHPQQALSVSLCSD-QPWLQIYSGEKL------------QRQGLAVEPMSCPPNAFNSGIDLLLLEPGKTHRLFFNI 295 (300)
T ss_pred EEEEeCCCCeEEEEEcC-CCEEEEECCCCC------------CCCEEEEeCCCCCCCCCCCCCCCEEECCCCEEEEEEEE
Confidence 88999999999999974 689999998521 1589999999962 68999999999999999
Q ss_pred EEEe
Q 021411 299 LVVP 302 (312)
Q Consensus 299 ~~~~ 302 (312)
+...
T Consensus 296 ~~~~ 299 (300)
T PRK15172 296 GGQR 299 (300)
T ss_pred EEEc
Confidence 8764
No 8
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.3e-37 Score=282.82 Aligned_cols=238 Identities=20% Similarity=0.271 Sum_probs=181.4
Q ss_pred EEEEEccCcEEEEEEeCCCeeEEEeCCCCccCCCCcccccceEEcCcCCCCC------------------CCCCceeeec
Q 021411 35 SAKVSLYGGQITSWRNEKGEELLFTSSKAIFKPPKAIRGGISTCFPQFGNCG------------------SPELHGFARN 96 (312)
Q Consensus 35 ~a~v~~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~irgG~p~lfP~~gr~~------------------~~~~HGfar~ 96 (312)
+|+|..+||.|.||+.++++|+||..+........+.++|.|+||||+||+. ++++|||+|+
T Consensus 2 ~~~i~~~Ga~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~P~~gri~~g~~~~~g~~~~~~~~~~~~~lHG~~~~ 81 (284)
T cd01081 2 VAVIAPRGANIISLKVKGDVDLLWGYPDAEEYPLAPTGGGGAILFPFANRISDGRYTFDGKQYPLNEDEGGNAIHGFVRN 81 (284)
T ss_pred EEEEeCcCcEEEEEEcCCCceEEecCCChhhhcccCCCCcceEecCcCCcccCCEEeECCEEecCCCCCCCccccCCeec
Confidence 6889989999999998644999999876544334567889999999999983 4689999999
Q ss_pred CCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCCcEEEEEEEEeCCCCceeeeeeccceee
Q 021411 97 KLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADGGLTLISRVRNINGKPFNFSFAYHTYLL 176 (312)
Q Consensus 97 ~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~ 176 (312)
++|+++..+. +..+|+|.++..++.. +|||+|+++++|+|. +++|+|+++|+|+++++|||++|+||||+
T Consensus 82 ~~w~v~~~~~--------~~~~v~l~~~~~~~~~-~~P~~~~l~~ty~L~-~~~L~i~~~v~N~~~~~~p~~~g~HpyF~ 151 (284)
T cd01081 82 LPWRVVATDE--------EEASVTLSYDLNDGPG-GYPFPLELTVTYTLD-ADTLTITFTVTNLGDEPMPFGLGWHPYFG 151 (284)
T ss_pred CcEEEEEecc--------CCcEEEEEEEeCCCCC-CCCEEEEEEEEEEEe-CCeEEEEEEEEeCCCCCcceeeecCceEe
Confidence 9999987651 2457888887666555 899999999999999 89999999999999999999999999999
Q ss_pred cCCc--CeeEEEcCCCCcee--e--ccccccceee----cCceeee-cCCcceEecCCC-----CeEEEEeCCCCcEEEE
Q 021411 177 VSDI--SEVRIEGLETLDYL--D--NLRQRERFTE----QGDAVTI-ESEMDRVYLRSP-----NVIAVLDHERKRTFVL 240 (312)
Q Consensus 177 ~~~~--~~~~~~~l~~~~~~--d--~l~~~~~~~~----~~~~~~~-~~~~D~~y~~~~-----~~~~l~d~~~~~~i~i 240 (312)
++.. .+.++.... ..+. | .++++..... ......+ ...+|++|.... ..+.|.++..++.|++
T Consensus 152 ~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 230 (284)
T cd01081 152 LPGVAIEDLRLRVPA-SKVLPLDDLLPPTGELEVPGEEDFRLGRPLGGGELDDCFLLLGNDAGTAEARLEDPDSRISVEF 230 (284)
T ss_pred cCCCcccceEEEecC-CEEEecCCccCCCCccCCcccccccCCcCcCCcccccccccCcCCCCeeEEEEECCCCeEEEEE
Confidence 9874 556555332 2333 2 2232221100 0111122 347899987543 2688888888889999
Q ss_pred EeeCCCCEEEeCCccccccccCCCCCCCCCceEEecceeeC---------CCeEeC-CCCEEEEEE
Q 021411 241 RKEGLSDVVVWNPWEKRSKSMVDFGDEEYKQMLCVDAAAVE---------KPITLK-PGEEWTGRL 296 (312)
Q Consensus 241 ~~~~~~~~vvw~P~~~~~~~~~d~~~~~~~~~vCvEP~~~~---------~~~~L~-pGe~~~~~~ 296 (312)
.... +.++||+|+.. .++|||||||++. +.++|+ |||+++.++
T Consensus 231 ~~~~-~~~~v~t~~~~------------~~~~~ciEP~t~~~da~~~~~~~~~~L~~pge~~~~~~ 283 (284)
T cd01081 231 ETGW-PFWQVYTGDGG------------RRGSVAIEPMTSAPDAFFNNNGGLITLKPPGETRTFSI 283 (284)
T ss_pred eCCC-CEEEEECCCCC------------cCCEEEEccccCCCCCCCCCCCceEEeCCCCceEEEEe
Confidence 8865 99999998521 2689999999961 578999 999988764
No 9
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=100.00 E-value=1.3e-37 Score=285.50 Aligned_cols=260 Identities=23% Similarity=0.355 Sum_probs=173.7
Q ss_pred eEEEEeCCCCCEEEEEccCcEEEEEEeCC-CeeEEEeCCC--CccCCCCcccccceEEcCcCCCC---------------
Q 021411 24 DQVVLRSPHGPSAKVSLYGGQITSWRNEK-GEELLFTSSK--AIFKPPKAIRGGISTCFPQFGNC--------------- 85 (312)
Q Consensus 24 ~~~~L~n~~g~~a~v~~~Ga~l~s~~~~~-g~evL~~~~~--~~~~~~~~irgG~p~lfP~~gr~--------------- 85 (312)
++|+|+|+++++|+|..+||+|+||+.++ ++|+||..++ .+++.+ .+.|+||||.||+
T Consensus 1 ~~itL~n~~~~~~~i~~~Ga~l~s~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~l~p~~~Ri~~g~~~~~g~~~~l~ 76 (300)
T PF01263_consen 1 DLITLENGNGLSAVIPEYGAELTSLQVKGNGREVLWQPDPADAYWSNS----FGGPILFPWPNRIRNGRFTFDGKPYCLP 76 (300)
T ss_dssp EEEEEEETTSEEEEEETBTTEEEEEEETTTTEESB-B-STHHHHHHST----CTTCEECSCSSEEGGGEEEETTEEEEBS
T ss_pred CEEEEECCCceEEEEeccCcEEEEEEECCCCeEEecCCCChHHhcccc----cceeeeecccceEECCEEEECCEEEEee
Confidence 47899999559999999999999999964 5999999886 333321 1224555555553
Q ss_pred ----CCCCCceeeecCCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCCc-EEEEEEEEeC
Q 021411 86 ----GSPELHGFARNKLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADGG-LTLISRVRNI 160 (312)
Q Consensus 86 ----~~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~-L~i~~~v~N~ 160 (312)
+++++|||+|++.|+|++.+. ..+++|++..+.++..+|||+|+++++|+|. +++ |+|+++|+|.
T Consensus 77 ~~~~~~~~~HG~~~~~~w~v~~~~~---------~~~~~~~~~~~~~~~~~yP~~~~l~~~y~L~-~~~~L~i~~~v~n~ 146 (300)
T PF01263_consen 77 WNGPYPNPIHGFARNKPWEVEEQSE---------DDSVSFTLVSDPDGEEGYPFDFRLRITYTLD-ENGKLTITYEVTND 146 (300)
T ss_dssp SSBTTTBEETBSGGGSB-EEEEEEE---------TTEEEEEEEEEETTHHHSSSEEEEEEEEEEE-TTEEEEEEEEEEES
T ss_pred eccCCCcCCCCCcccccEEEEEecc---------cceEEEEEEecCccceeeccceeeEEEEEEC-CCCeEEEEEEEEec
Confidence 367999999999999998761 1345555544333346799999999999999 899 9999999999
Q ss_pred CCCceeeeeeccceeecC----CcCeeEEEcCCCCcee-eccccccceeec------Cceeee-cC--CcceEecCCC-C
Q 021411 161 NGKPFNFSFAYHTYLLVS----DISEVRIEGLETLDYL-DNLRQRERFTEQ------GDAVTI-ES--EMDRVYLRSP-N 225 (312)
Q Consensus 161 ~~~~~pf~~g~HpYF~~~----~~~~~~~~~l~~~~~~-d~l~~~~~~~~~------~~~~~~-~~--~~D~~y~~~~-~ 225 (312)
+ ++|||++|+||||+++ +...+.+.+.....+- +.+|+++..... .....+ .. .+|++|...+ .
T Consensus 147 ~-~~~p~~~g~HpyF~l~~~~~~~~~~~~~~~~~~~~~~~~lptg~~~~~~~~~~d~~~~~~i~~~~~~~D~~f~~~~~~ 225 (300)
T PF01263_consen 147 G-KPMPFNLGFHPYFNLPGEDIDDHQLQVPADEYLELDERLLPTGELAPVKGTPFDFRQGRPIGDDIPGLDHCFVLDPPG 225 (300)
T ss_dssp S-SEEEEBEEEEEEEETTCTSGTTGEEEEEEEEEEEEETTSSEEEEEEETTTCETCGSSSEEECSSCTCEEEEEEESSSS
T ss_pred C-ccEEeeccccceEEcCCcceeeeEEEeccceeeecccccCCceeeecccCCccccccCeeecccccccceEEEcCCCc
Confidence 9 9999999999999999 4455666642111111 234544321101 111122 22 6899998776 5
Q ss_pred eEEEEeCCCCcEEEEEe-eCCCCEEEeCCccccccccCCCCCCCCCceEEecceeeC-CCeEeCCCCEEEEEEEEE
Q 021411 226 VIAVLDHERKRTFVLRK-EGLSDVVVWNPWEKRSKSMVDFGDEEYKQMLCVDAAAVE-KPITLKPGEEWTGRLQLL 299 (312)
Q Consensus 226 ~~~l~d~~~~~~i~i~~-~~~~~~vvw~P~~~~~~~~~d~~~~~~~~~vCvEP~~~~-~~~~L~pGe~~~~~~~i~ 299 (312)
...+.+...+++|.|.. .++|.+|||+|+... +.+...+...+..++|+|+.... +.++|+|||+++.+++|+
T Consensus 226 ~~~~~~~~~~~~i~l~~~~~~p~~~v~t~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGe~~~~~~~~~ 300 (300)
T PF01263_consen 226 RPVIRLRSPGSGISLEFSTSFPWLVVWTPGFDP-KYICIEPIAIEPDFVPDEANNPGKGLIVLAPGESYSFSTRYT 300 (300)
T ss_dssp EEEEEEETTTEEEEEEEEESSSEEEEEEETTSS-TEETTCEEECEEESECECCCECCHEGEEEETTSEEEEEEEEE
T ss_pred cEEEEeecccceEEEEecCCCCcEEEECCCCcc-cccCCcccccCCCeeecccccCCCCCEEECCCCEEEEEEEEC
Confidence 55555556677777764 468899999986542 11111111122233444443322 479999999999999985
No 10
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=7.7e-36 Score=272.24 Aligned_cols=236 Identities=20% Similarity=0.279 Sum_probs=173.8
Q ss_pred CEEEEEccCcEEEEEEeCCCeeEEEeCCCCccCCCCcccccceEEcCcCCCCC-----------CCC---------Ccee
Q 021411 34 PSAKVSLYGGQITSWRNEKGEELLFTSSKAIFKPPKAIRGGISTCFPQFGNCG-----------SPE---------LHGF 93 (312)
Q Consensus 34 ~~a~v~~~Ga~l~s~~~~~g~evL~~~~~~~~~~~~~irgG~p~lfP~~gr~~-----------~~~---------~HGf 93 (312)
++|+|..+||.|++|+. +|+++||..+.... ....+ | |+||||+||+. +++ +||+
T Consensus 1 ~~v~i~~~Ga~l~~~~~-~g~~il~~~~~~~~--~~~~~-g-~~l~p~~nRi~~g~~~~~G~~y~l~~N~~~~~~~~HG~ 75 (284)
T cd09022 1 YRAVVTEVGAGLRSLTV-GGRDLVEPYPADEV--PPGAA-G-QVLAPWPNRIADGRYTFDGVEHQLPITEPERGNAIHGL 75 (284)
T ss_pred CEEEEEecCcEEEEEEE-CCEEEEecCCCccC--Ccccc-c-cEEeeeCCcccCCEEEECCEEEEccCcCCCCCCCCcCC
Confidence 47899999999999998 68999997765432 11223 3 69999999983 333 9999
Q ss_pred eecCCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCCcEEEEEEEEeCCCCceeeeeeccc
Q 021411 94 ARNKLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADGGLTLISRVRNINGKPFNFSFAYHT 173 (312)
Q Consensus 94 ar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~~~~~~pf~~g~Hp 173 (312)
+|.+.|++++.+ ..+++|.+... ...+|||+|+++++|+|. +++|+|+++|+|+++++|||++|+||
T Consensus 76 ~~~~~w~v~~~~----------~~~v~l~l~~~--~~~~yP~~~~~~~~y~L~-~~~L~i~~~v~N~~~~~~p~~~g~Hp 142 (284)
T cd09022 76 VRWADWQLVEHT----------DSSVTLRTRIP--PQPGYPFTLELTVTYELD-DDGLTVTLTATNVGDEPAPFGVGFHP 142 (284)
T ss_pred eecceEEEeecc----------CCeEEEEEEeC--CccCCCceEEEEEEEEEc-CCcEEEEEEEEeCCCCCeEeeeEecc
Confidence 999999998765 34677777653 357899999999999999 89999999999999999999999999
Q ss_pred eeecCCc--CeeEEEcCCCCcee--e--ccccccceeecCceeeec-------CCcceEecCCC------CeEEEEeCCC
Q 021411 174 YLLVSDI--SEVRIEGLETLDYL--D--NLRQRERFTEQGDAVTIE-------SEMDRVYLRSP------NVIAVLDHER 234 (312)
Q Consensus 174 YF~~~~~--~~~~~~~l~~~~~~--d--~l~~~~~~~~~~~~~~~~-------~~~D~~y~~~~------~~~~l~d~~~ 234 (312)
||++++. .+..+.-.. ..++ | .+|++.... ....++|. .++|++|..+. ..++|.++.+
T Consensus 143 yF~l~~~~~~~~~L~~~a-~~~~~~d~~~lptg~~~~-~~~~~df~~~~~l~~~~~D~~f~~~~~~~~~~~~~~l~~~~~ 220 (284)
T cd09022 143 YLSAGGAPLDECTLTLPA-DTWLPVDERLLPTGTEPV-AGTPYDFRTGRRLGGTALDTAFTDLTRDADGRARARLTGPDG 220 (284)
T ss_pred eEecCCCCcccEEEEEEC-ceEEecCCccCCCcCcCC-CCCCccCcCCccccCccccccccccccCCCCcEEEEEECCCC
Confidence 9999853 454444211 2222 2 355443211 12223331 26899987542 2678888766
Q ss_pred CcEEEEEe-eCCCCEEEeCCccccccccCCCCCCCCCceEEecceeeC--------CCeEeCCCCEEEEEEEE
Q 021411 235 KRTFVLRK-EGLSDVVVWNPWEKRSKSMVDFGDEEYKQMLCVDAAAVE--------KPITLKPGEEWTGRLQL 298 (312)
Q Consensus 235 ~~~i~i~~-~~~~~~vvw~P~~~~~~~~~d~~~~~~~~~vCvEP~~~~--------~~~~L~pGe~~~~~~~i 298 (312)
+.|+|.. .++|.++||+|..- +....+++||||||+.. +.++|+|||+++.+++|
T Consensus 221 -~~l~l~~~~~~~~~~vyt~~~~--------~~~~~~~~iclEP~~~~~da~n~~~~~~~L~pge~~~~~~~i 284 (284)
T cd09022 221 -RGVELWADESFPWVQVFTADTL--------PPPGRRRGLAVEPMTCPPNAFNSGTDLIVLAPGETHTASWGI 284 (284)
T ss_pred -CEEEEEECCCCCEEEEECCCCC--------CCCCCCCEEEEccCCCCCCcCcCCCCcEEECCCCEEEEEEeC
Confidence 8999998 46899999998421 01112689999999861 57899999999998875
No 11
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=100.00 E-value=3.3e-34 Score=266.25 Aligned_cols=254 Identities=16% Similarity=0.276 Sum_probs=180.7
Q ss_pred EEEeCCCCCEEEEEccCcEEEEEEeCC--C--eeEEEeCC-CCccCCCCcccccceEEcCcCCCCC-----------CC-
Q 021411 26 VVLRSPHGPSAKVSLYGGQITSWRNEK--G--EELLFTSS-KAIFKPPKAIRGGISTCFPQFGNCG-----------SP- 88 (312)
Q Consensus 26 ~~L~n~~g~~a~v~~~Ga~l~s~~~~~--g--~evL~~~~-~~~~~~~~~irgG~p~lfP~~gr~~-----------~~- 88 (312)
++|+|+++++|+|..+||.|+||+.++ | +++||..+ .+.|....+..| +++.||.||+. ++
T Consensus 2 ~~l~n~~~~~~~i~~~GA~l~~l~~~~~~g~~~~~v~~~~~~~~~~~~~~~~g--~~lgp~anRi~~g~~~~~G~~y~l~ 79 (326)
T cd09019 2 YTLTNGNGLRVSILNYGATIQSLKVPDKNGKLRDVVLGFDDLEDYLKNSPYFG--ATVGRVANRIANGRFTLDGKTYQLE 79 (326)
T ss_pred EEEECCCCcEEEEECcCcEEEEEEEECCCCCEeeeEECCCCHHHHhhCCCccC--CcccCcCCeecCCEEEECCEEEEcc
Confidence 689999559999999999999999743 3 78999884 455654444443 56789999983 22
Q ss_pred ------CC----ceeeecCCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecC-CcEEEEEEE
Q 021411 89 ------EL----HGFARNKLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAAD-GGLTLISRV 157 (312)
Q Consensus 89 ------~~----HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~-~~L~i~~~v 157 (312)
++ |||+| +.|++...+ ..+|+|++.+. +...+|||+|+++++|+|. + ++|+|++++
T Consensus 80 ~Ne~~~~LHGg~~G~~~-~~w~~~~~~----------~~~v~l~~~~~-~~~~gyP~~~~~~v~y~L~-~~~~L~i~~~~ 146 (326)
T cd09019 80 ANEGPNHLHGGPKGFDK-RVWDVEEVE----------ENSVTFSLVSP-DGEEGFPGNLTVTVTYTLT-DDNELTIEYEA 146 (326)
T ss_pred CCCCCcccCCCCccccC-cEEeEEecc----------CCEEEEEEECC-cccCCCCeEEEEEEEEEEC-CCCEEEEEEEE
Confidence 33 55566 599998765 45788888865 4568999999999999999 7 899999999
Q ss_pred EeCCCCceeeeeeccceeecCC-----cCeeEEEcCCCCcee----eccccccceeecCceeee----------------
Q 021411 158 RNINGKPFNFSFAYHTYLLVSD-----ISEVRIEGLETLDYL----DNLRQRERFTEQGDAVTI---------------- 212 (312)
Q Consensus 158 ~N~~~~~~pf~~g~HpYF~~~~-----~~~~~~~~l~~~~~~----d~l~~~~~~~~~~~~~~~---------------- 212 (312)
+| +++|||++|+||||+++. +.+..+. ++...++ +.+|++......+...+|
T Consensus 147 ~~--~~~~p~~~g~HpyFnl~~~~~~~~~~~~L~-~~a~~~~~~d~~~iPtG~~~~~~~~~~df~~~~~l~~~~~~~~~~ 223 (326)
T cd09019 147 TT--DKPTPVNLTNHSYFNLAGEGSGDILDHELQ-INADRYLPVDEELIPTGEILPVAGTPFDFRKPKPIGRIDLDDEQL 223 (326)
T ss_pred Ee--CCCeEecccceeeEecCCCCCCCccceEEE-EecCcEEeeCCCCCcCCCceecCCCCccccCccCccccccchhhc
Confidence 98 599999999999999984 3344443 2222333 346665321101111111
Q ss_pred --cCCcceEec--CC----CCeEEEEeCCCCcEEEEEeeCCCCEEEeCCccccccccCCCCCC--CCCceEEecceee--
Q 021411 213 --ESEMDRVYL--RS----PNVIAVLDHERKRTFVLRKEGLSDVVVWNPWEKRSKSMVDFGDE--EYKQMLCVDAAAV-- 280 (312)
Q Consensus 213 --~~~~D~~y~--~~----~~~~~l~d~~~~~~i~i~~~~~~~~vvw~P~~~~~~~~~d~~~~--~~~~~vCvEP~~~-- 280 (312)
..++|++|. .+ ...++|.++.++++|+|.+ +.|.+|||++...... + ..... ..+.+||||||+.
T Consensus 224 ~~~~~~D~~f~l~~~~~~~~~~a~l~~~~sg~~l~v~t-~~p~~~vyT~~~~~~~-~-~~~~~~~~~~~~iclEpq~~pd 300 (326)
T cd09019 224 KLGGGYDHNFVLDKGGGKLRPAARLTSPESGRKLEVYT-TQPGVQFYTGNFLDGT-P-GGGGKVYGKRSGFCLETQHFPD 300 (326)
T ss_pred ccCCCcceEEEECCCCCccceeEEEEcCCCCcEEEEec-CCCEEEEEeCCCCCcc-c-CCCCcEeCCCCEEEEeccCCCC
Confidence 247999996 32 1357888988899999987 4899999998432100 0 01111 2367899999985
Q ss_pred --C----CCeEeCCCCEEEEEEEEEE
Q 021411 281 --E----KPITLKPGEEWTGRLQLLV 300 (312)
Q Consensus 281 --~----~~~~L~pGe~~~~~~~i~~ 300 (312)
+ +.++|+|||+++..+++++
T Consensus 301 A~n~~~~g~~~L~pge~~~~~~~y~f 326 (326)
T cd09019 301 APNHPNFPSIILRPGETYRHTTVYRF 326 (326)
T ss_pred cccccCCCCeEECCCCEEEEEEEEEC
Confidence 1 4789999999999998864
No 12
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.8e-33 Score=257.33 Aligned_cols=253 Identities=20% Similarity=0.285 Sum_probs=178.7
Q ss_pred CCCceEEEEeCCCCCEEEEEccCcEEEEEEeCCCeeEEEeCC--CCccCCCCcccc-cceEEcCcCCCCC----------
Q 021411 20 WNGIDQVVLRSPHGPSAKVSLYGGQITSWRNEKGEELLFTSS--KAIFKPPKAIRG-GISTCFPQFGNCG---------- 86 (312)
Q Consensus 20 ~~~~~~~~L~n~~g~~a~v~~~Ga~l~s~~~~~g~evL~~~~--~~~~~~~~~irg-G~p~lfP~~gr~~---------- 86 (312)
......+++.|+.+..++|..+||.|++|+. +++++++..+ +.+.. .++ +.++|+||.|||.
T Consensus 9 ~~~~~~i~~~~~~~~~~~~~~~GA~l~~l~~-~~~~v~l~~~~~~~~~~----~~~~~ga~l~p~anRI~~g~f~~~G~~ 83 (308)
T COG2017 9 GQPVRLLTLGNGGGMVVTVPDWGATLTSLRV-NGRNLLLGFDDAESYPA----TRGYGGAILGPYANRISNGRFTLDGKT 83 (308)
T ss_pred CCceEEEEEeCCCeEEEEEccCCcEEEEEEE-CCceEEeecCCHHHhcc----ccccccceecCccCcccCCEEEECCEE
Confidence 4556788899988677777799999999999 6888876554 22222 223 6788999999993
Q ss_pred --------CCCCceeeecCCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCCcEEEEEEEE
Q 021411 87 --------SPELHGFARNKLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADGGLTLISRVR 158 (312)
Q Consensus 87 --------~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~~v~ 158 (312)
+.++||+++..+|++...+. .+...++|.+++.+ .+|||+|+++++|+|. +++|+|+|+++
T Consensus 84 y~L~~N~~~~~lHG~~~~~~~~v~~~~~-------~~~~~~~l~~~~~~---~gyP~~l~~~vtY~L~-~~~L~v~~~~~ 152 (308)
T COG2017 84 YQLPPNEGGNALHGGARDFDWQVWEAEE-------DDNAEFSLVLRDGE---DGYPGNLEATVTYTLN-EDGLTVTYEVT 152 (308)
T ss_pred EEeCCCCCCccccCCccCCCeeEEEEEe-------ccCCEEEEEecccC---CCCCceEEEEEEEEEc-CCCEEEEEEEE
Confidence 23599999999999988763 11226666666544 5599999999999999 77799999999
Q ss_pred eCCCCceeeeeeccceeecCCcCe---eEEEcCCCCcee---e--ccccccc---eeecCceeeecCCcceEecCC----
Q 021411 159 NINGKPFNFSFAYHTYLLVSDISE---VRIEGLETLDYL---D--NLRQRER---FTEQGDAVTIESEMDRVYLRS---- 223 (312)
Q Consensus 159 N~~~~~~pf~~g~HpYF~~~~~~~---~~~~~l~~~~~~---d--~l~~~~~---~~~~~~~~~~~~~~D~~y~~~---- 223 (312)
|.++++|||++|+||||+++.... .... ....|+ + .++++.. .......+.....+|+.|...
T Consensus 153 n~~~~~~p~~~g~HpYFnl~~~~~~~~~~~~--~~~~~l~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~ 230 (308)
T COG2017 153 NDGDEPTPFNLGNHPYFNLPGDGRLEHILAI--ASDYYLPVDDEEPIPTGDIKREPKPLEDDFAADDPYDHAFLLNGARG 230 (308)
T ss_pred eCCCCcceecccccceEecCCCCCcccEEEe--cCCceEEcccCCCCCcccccccccccccccccccccccceeeccccC
Confidence 999999999999999999996532 2111 122332 2 2332210 000111111112257777433
Q ss_pred -CCeEEEEeCCCCcEEEEEeeCCCCEEEeCCccccccccCCCCCCCCCceEEecceee-----C----CCeEeCCCCEEE
Q 021411 224 -PNVIAVLDHERKRTFVLRKEGLSDVVVWNPWEKRSKSMVDFGDEEYKQMLCVDAAAV-----E----KPITLKPGEEWT 293 (312)
Q Consensus 224 -~~~~~l~d~~~~~~i~i~~~~~~~~vvw~P~~~~~~~~~d~~~~~~~~~vCvEP~~~-----~----~~~~L~pGe~~~ 293 (312)
...+.|.++.++++|+|.++ .|.++||+.... + .+.++|||||++ + +..+|+|||+++
T Consensus 231 ~~~~a~l~~~~~~~~l~v~t~-~p~~~~yt~~~~-~----------~~~~~clEp~~~~pdA~n~~~~~~~~L~pGe~~~ 298 (308)
T COG2017 231 LKPAARLYDPDSGLSLEVETD-EPFVQLYTGNFL-A----------GRDGLCLEPQSGLPDAFNHPGFGLIVLEPGETYS 298 (308)
T ss_pred CcceEEEEcCCCCeEEEEEeC-CCeEEEEeCCCC-C----------cCCeEEeeeccCCCCcCCCCCcccceeCCCCEEE
Confidence 24788999999999999975 666666663211 0 268999999994 1 467799999999
Q ss_pred EEEEEEEEe
Q 021411 294 GRLQLLVVP 302 (312)
Q Consensus 294 ~~~~i~~~~ 302 (312)
..++|++..
T Consensus 299 ~~~~~~~~~ 307 (308)
T COG2017 299 AETRFRFES 307 (308)
T ss_pred EEEEEEEec
Confidence 999999864
No 13
>PLN00194 aldose 1-epimerase; Provisional
Probab=100.00 E-value=1.8e-31 Score=248.38 Aligned_cols=265 Identities=15% Similarity=0.210 Sum_probs=184.1
Q ss_pred CCceEEEEeCCCCCEEEEEccCcEEEEEEeC--CC--eeEEEeCCCC-ccCCCCcccccceEEcCcCCCCC---------
Q 021411 21 NGIDQVVLRSPHGPSAKVSLYGGQITSWRNE--KG--EELLFTSSKA-IFKPPKAIRGGISTCFPQFGNCG--------- 86 (312)
Q Consensus 21 ~~~~~~~L~n~~g~~a~v~~~Ga~l~s~~~~--~g--~evL~~~~~~-~~~~~~~irgG~p~lfP~~gr~~--------- 86 (312)
+.+..++|+|+. ++++|..+||.|+||+.+ +| ++++...+.. .+....+.. |. ++.||.||+.
T Consensus 7 ~~~~~~~L~n~~-l~~~i~~~GA~l~s~~~~~~~g~~~~vvlg~~~~~~y~~~~~~~-Ga-~lgp~anRI~~g~~~~~G~ 83 (337)
T PLN00194 7 EKPGIYELKNGN-ISVKLTNYGATITSLILPDKNGKLADVVLGFDSVEPYKNDSPYF-GA-IVGRVANRIKGAKFTLNGV 83 (337)
T ss_pred CeeEEEEEEeCC-EEEEEECCCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCcc-CC-eeCCCCCceeCCEEEECCE
Confidence 456788999988 999999999999999874 34 6777544422 122223444 43 4999999983
Q ss_pred ---------CCCCceeee---cCCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCCcEEEE
Q 021411 87 ---------SPELHGFAR---NKLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADGGLTLI 154 (312)
Q Consensus 87 ---------~~~~HGfar---~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~ 154 (312)
+..+||+.+ .+.|+|+.... ++..+|+|.+.+. +...+|||+|+++++|+|.++++|+|+
T Consensus 84 ~y~l~~N~~~~~lHGg~~G~~~~~w~v~~~~~-------~~~~~v~~~l~~~-~~~~gyP~~~~~~v~Y~L~~~~~L~i~ 155 (337)
T PLN00194 84 TYKLPPNNGPNSLHGGPKGFSKVVWEVAKYKK-------GEKPSITFKYHSF-DGEEGFPGDLSVTVTYTLLSSNTLRLD 155 (337)
T ss_pred EEEeccCCCCcccCCCCcccCceEEeEEEecc-------CCCcEEEEEEECC-CcCCCCCEEEEEEEEEEECCCCeEEEE
Confidence 235797643 48999976551 2346799999865 356899999999999999734899999
Q ss_pred EEEEeCCCCceeeeeeccceeecCC-----cCeeEEEcCCCCcee----eccccccceeecCceeeec------------
Q 021411 155 SRVRNINGKPFNFSFAYHTYLLVSD-----ISEVRIEGLETLDYL----DNLRQRERFTEQGDAVTIE------------ 213 (312)
Q Consensus 155 ~~v~N~~~~~~pf~~g~HpYF~~~~-----~~~~~~~~l~~~~~~----d~l~~~~~~~~~~~~~~~~------------ 213 (312)
++++|. +++|||++|+||||+++. +.+..++- ....++ +.+|+++.....+..++|.
T Consensus 156 ~~~~n~-~~~~p~~~g~HpYFnL~~~~~~~i~~~~L~i-~a~~~~~~d~~~iPtG~~~~v~~t~~Df~~~~~l~~~~~~~ 233 (337)
T PLN00194 156 MEAKPL-NKATPVNLAQHTYWNLAGHNSGDILSHKIQI-FGSHITPVDENLIPTGEILPVKGTPFDFTTPKKIGSRINEL 233 (337)
T ss_pred EEEEEC-CCCeEEEccccceEEcCCCCCCCcCCeEEEE-ecCCEEEeCCCcCcCCceeeCCCCCcccCCCcCcchhhccc
Confidence 999999 999999999999999974 33444442 223443 3466653211111112221
Q ss_pred -CCcceEecCC-------CCeEEEEeCCCCcEEEEEeeCCCCEEEeCCccccccccCCCCCCC--CCceEEecceeeC--
Q 021411 214 -SEMDRVYLRS-------PNVIAVLDHERKRTFVLRKEGLSDVVVWNPWEKRSKSMVDFGDEE--YKQMLCVDAAAVE-- 281 (312)
Q Consensus 214 -~~~D~~y~~~-------~~~~~l~d~~~~~~i~i~~~~~~~~vvw~P~~~~~~~~~d~~~~~--~~~~vCvEP~~~~-- 281 (312)
.++|++|.-. ...++|.++.++++++|.++ .|.+|||++..-.. . ....... .+.+||||||+..
T Consensus 234 ~~g~Dh~f~l~~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~v~vyT~n~~~~-~-~~~~~~~~~~~~~i~lEpq~~pda 310 (337)
T PLN00194 234 PKGYDHNYVLDGEEKEGLKKAAKVKDPKSGRVLELWTN-APGMQFYTSNYVNG-V-KGKGGAVYGKHAGLCLETQGFPDA 310 (337)
T ss_pred cCCcceEEEECCCCcccceeeEEEEcCCCCCEEEEEeC-CCEEEEECCCCCCC-c-cCCCCCEeCCCCEEEEeccCCCCc
Confidence 2789999621 22578888888999999985 79999999742110 0 0011111 2468999999751
Q ss_pred ------CCeEeCCCCEEEEEEEEEEE
Q 021411 282 ------KPITLKPGEEWTGRLQLLVV 301 (312)
Q Consensus 282 ------~~~~L~pGe~~~~~~~i~~~ 301 (312)
+.++|+|||.+...++++|.
T Consensus 311 ~n~~~~~~~~L~pge~~~~~t~y~f~ 336 (337)
T PLN00194 311 VNQPNFPSVVVNPGEKYKHTMLFEFS 336 (337)
T ss_pred ccCCCCCCeEECCCCEEEEEEEEEEe
Confidence 47899999999999999875
No 14
>TIGR02636 galM_Leloir galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam model pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose.
Probab=100.00 E-value=6e-31 Score=244.82 Aligned_cols=260 Identities=15% Similarity=0.205 Sum_probs=180.7
Q ss_pred CceEEEEeCCCCCEEEEEccCcEEEEEEeC---CCeeEEEeCC-CCccCCCCcccccceEEcCcCCCCC-----------
Q 021411 22 GIDQVVLRSPHGPSAKVSLYGGQITSWRNE---KGEELLFTSS-KAIFKPPKAIRGGISTCFPQFGNCG----------- 86 (312)
Q Consensus 22 ~~~~~~L~n~~g~~a~v~~~Ga~l~s~~~~---~g~evL~~~~-~~~~~~~~~irgG~p~lfP~~gr~~----------- 86 (312)
.+..|+|+|.+|++|+|..+||.|+||+.+ ..++++...+ .+.+....+.. |+ ++.||.|||.
T Consensus 3 ~v~~~~l~n~~g~~v~i~~~GA~i~~l~~pd~~~~~~vvlg~~~~~~y~~~~~~~-Ga-~igp~anRI~~g~f~~~G~~y 80 (335)
T TIGR02636 3 PAQLITLTNNNGMTISFMDIGATWLSCQVPLAGELREVLLGFASMEEYYKQDAYL-GA-TVGRYANRIANGSFEIDGETY 80 (335)
T ss_pred eeEEEEEECCCCcEEEEeCcCcEEEEEEeeCCCCccceEECCCCHHHHhhCCCcc-CC-CcCCCCceecCCEEEECCEEE
Confidence 456889999888999999999999999974 2456764443 22232222333 33 4889999983
Q ss_pred -------CCCCceee---ecCCcEEec-CCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCCcEEEEE
Q 021411 87 -------SPELHGFA---RNKLWIIDD-NPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADGGLTLIS 155 (312)
Q Consensus 87 -------~~~~HGfa---r~~~W~v~~-~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~ 155 (312)
...+||+. +.+.|+++. .+ ..+|+|.+.+.+ ...+||++++++++|+|+++++|+|++
T Consensus 81 ~L~~N~~~n~lHGg~~G~~~~~W~v~~~~~----------~~~v~l~~~~~~-~~~gyPg~l~~~vtY~L~~~~~L~i~~ 149 (335)
T TIGR02636 81 QLSINQGGNCLHGGPEGFDKRRWNIEELQE----------EVQVKFSLESPD-GDQGFPGNLTVSVTYTLTDDNELTIEY 149 (335)
T ss_pred EeccCCCCcccCCCCccccccEEeEeeecC----------CCEEEEEEECCC-cCCCCCeEEEEEEEEEECCCCEEEEEE
Confidence 34699998 789999976 44 347889887543 468999999999999995378999999
Q ss_pred EEEeCCCCceeeeeeccceeecCCc------CeeEEEcCCCCcee----eccccccceeecCceeeec------------
Q 021411 156 RVRNINGKPFNFSFAYHTYLLVSDI------SEVRIEGLETLDYL----DNLRQRERFTEQGDAVTIE------------ 213 (312)
Q Consensus 156 ~v~N~~~~~~pf~~g~HpYF~~~~~------~~~~~~~l~~~~~~----d~l~~~~~~~~~~~~~~~~------------ 213 (312)
+++ ++++|||++|+||||+++.. .+..+. +....++ +.+|+++.....+..++|.
T Consensus 150 ~a~--~d~~tp~nlt~H~YFnL~g~~~~~~i~~~~L~-i~a~~~~~~d~~~iPtG~~~~v~~t~~Dfr~~~~l~~~~~~~ 226 (335)
T TIGR02636 150 EAT--TDKATPFNLTNHVYFNLDGADAGSDVLSHELQ-LNADRYLPLDEEGIPLGQLKPVDGTSFDFRKEKAIGQDFLAN 226 (335)
T ss_pred EEE--ECCceEEeccccceEEcCCCCCCCChhceEEE-EECCcEEEeCCCcCcCCceecCCCCccccCCCcCcCcccccc
Confidence 996 89999999999999999752 233333 2233443 3456653211111112211
Q ss_pred ------CCcceEecCC------CCeEEEEeCCCCcEEEEEeeCCCCEEEeCCccccccccCCCCCC--CCCceEEeccee
Q 021411 214 ------SEMDRVYLRS------PNVIAVLDHERKRTFVLRKEGLSDVVVWNPWEKRSKSMVDFGDE--EYKQMLCVDAAA 279 (312)
Q Consensus 214 ------~~~D~~y~~~------~~~~~l~d~~~~~~i~i~~~~~~~~vvw~P~~~~~~~~~d~~~~--~~~~~vCvEP~~ 279 (312)
.++|++|.-. ...++|.++.++++|+|.+ +.|.+|||++..-.. . ....+. ..+..||||||+
T Consensus 227 ~~~~~~~g~D~~f~l~~~~~~~~~~a~l~~~~sg~~l~v~t-~~p~~~vyT~~~~~~-~-~~~~g~~~~~~~gialE~q~ 303 (335)
T TIGR02636 227 DQQQLAKGYDHAFLLNGERLDGKPAAILTSPDEDLSLEVFT-TQPALQIYTGNFLAG-T-PNRGGKKYVDHAGLALETQF 303 (335)
T ss_pred cccccCCCcceEEEECCCCCCCceeEEEEcCCCCcEEEEec-CCCEEEEecCCCcCC-c-cCCCCcEeCCCcEEEEeccc
Confidence 2689999621 1247888999999999997 489999999742110 0 001111 135689999999
Q ss_pred eC--------CCe--EeCCCCEEEEEEEEEE
Q 021411 280 VE--------KPI--TLKPGEEWTGRLQLLV 300 (312)
Q Consensus 280 ~~--------~~~--~L~pGe~~~~~~~i~~ 300 (312)
.. +.+ +|+|||+++..+.++|
T Consensus 304 ~pd~~n~~~~~~~~~~L~pge~~~~~t~y~f 334 (335)
T TIGR02636 304 LPDSPNHPEWGDISCILSPGQEYQHQTRYQF 334 (335)
T ss_pred CCCcccccCCCCCceEECCCCEEEEEEEEEE
Confidence 62 233 5999999999999886
No 15
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=99.97 E-value=2.8e-29 Score=233.62 Aligned_cols=261 Identities=16% Similarity=0.243 Sum_probs=180.4
Q ss_pred CCceEEEEeCCCCCEEEEEccCcEEEEEEeC--CC--eeEEEeC--CCCccCCCCcccccceEEcCcCCCCC--------
Q 021411 21 NGIDQVVLRSPHGPSAKVSLYGGQITSWRNE--KG--EELLFTS--SKAIFKPPKAIRGGISTCFPQFGNCG-------- 86 (312)
Q Consensus 21 ~~~~~~~L~n~~g~~a~v~~~Ga~l~s~~~~--~g--~evL~~~--~~~~~~~~~~irgG~p~lfP~~gr~~-------- 86 (312)
+.+..|+|+|.+|++|+|..+||.|+||+.+ +| ++++... .+.+.. ..+..| .++.||.|||.
T Consensus 7 ~~v~~~tl~n~~g~~v~i~~~GA~i~~l~vpd~~g~~~dvvlg~~~~~~y~~-~~~~~G--a~iGr~anRI~~g~f~~~G 83 (342)
T PRK11055 7 QPYRLLTLRNNAGMVVTLMDWGATWLSCRVPLSDGSVREVLLGCASPEDYPD-QAAYLG--ASVGRYANRIANSRFTLDG 83 (342)
T ss_pred CeEEEEEEECCCCeEEEEeCcCcEEEEEEeECCCCCEeeeEECCCCHHHHhh-CCCccC--ceeCCcCCcccCCEEEECC
Confidence 4577899999888999999999999999974 45 5776433 233433 234443 35899999983
Q ss_pred ----------CCCCceee---ecCCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCCcEEE
Q 021411 87 ----------SPELHGFA---RNKLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADGGLTL 153 (312)
Q Consensus 87 ----------~~~~HGfa---r~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i 153 (312)
...+||+. +.+.|+++..+ ..+|+|++.+. +...+||++++++++|+|.++++|+|
T Consensus 84 ~~y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~----------~~~v~l~~~~~-~g~~GyPg~l~~~vtY~L~~~~~l~i 152 (342)
T PRK11055 84 ETYQLSPNQGGNQLHGGPEGFDKRRWQIVNQN----------DRQVTFSLSSP-DGDQGFPGNLGATVTYRLTDDNRVSI 152 (342)
T ss_pred EEEEcccCCCCcccCCCCcccCCcEEEEEEcc----------CCEEEEEEECC-CcCCCCCeEEEEEEEEEEcCCCeEEE
Confidence 34789985 56899997655 34788888754 45689999999999999984458888
Q ss_pred EEEEEeCCCCceeeeeeccceeecCC------cCeeEEEcCCCCcee----eccccccceeecCceeee-----------
Q 021411 154 ISRVRNINGKPFNFSFAYHTYLLVSD------ISEVRIEGLETLDYL----DNLRQRERFTEQGDAVTI----------- 212 (312)
Q Consensus 154 ~~~v~N~~~~~~pf~~g~HpYF~~~~------~~~~~~~~l~~~~~~----d~l~~~~~~~~~~~~~~~----------- 212 (312)
+++++ +++++||++|+||||+++. +.+..+. +....++ +.+|+++.....+..++|
T Consensus 153 ~~~a~--~d~~tp~nlt~H~YFnL~g~~~~~~i~~h~L~-i~a~~~~~~d~~~iPTG~~~~v~~t~~DFr~~~~l~~~~~ 229 (342)
T PRK11055 153 TYRAT--VDKPCPVNLTNHAYFNLDGAEEGSDVRNHKLQ-INADEYLPVDEGGIPNGGLKSVAGTSFDFRQPKTIAQDFL 229 (342)
T ss_pred EEEEE--cCCCeEEeccccceEECCCCCCCCCccceEEE-EecCCEEEECcccCccCcEeccCCCcccccCCcCcCcccc
Confidence 88874 7999999999999999974 1122333 2233443 346665421111111111
Q ss_pred -------cCCcceEecCC-----C-CeEEEEeCCCCcEEEEEeeCCCCEEEeCCccccccccCCCCCCCC--CceEEecc
Q 021411 213 -------ESEMDRVYLRS-----P-NVIAVLDHERKRTFVLRKEGLSDVVVWNPWEKRSKSMVDFGDEEY--KQMLCVDA 277 (312)
Q Consensus 213 -------~~~~D~~y~~~-----~-~~~~l~d~~~~~~i~i~~~~~~~~vvw~P~~~~~~~~~d~~~~~~--~~~vCvEP 277 (312)
..++|++|... . ..+.+.++.++++|+|.+ +.|.++||++..-.. . ....+..| +.-|||||
T Consensus 230 ~~~~~~~~~g~D~~fvl~~~~~~~~~~a~l~~~~sg~~l~v~t-~~p~lqvYT~n~~~~-~-~~~~g~~~~~~~gialE~ 306 (342)
T PRK11055 230 ADDDQQKVKGYDHAFLLQAKGDGKKPAAHLWSPDEKLQMKVYT-TAPALQFYSGNFLAG-T-PSRGGGPYADYAGLALES 306 (342)
T ss_pred cchhcccCCCcceEEEECCCCcccceeEEEEcCCCCeEEEEEc-CCCEEEEecCCccCC-c-cCCCCcEeCCCceEEEEc
Confidence 13689999531 1 246788888999999997 589999999742110 0 01111112 45799999
Q ss_pred eeeC----------CCeEeCCCCEEEEEEEEEEE
Q 021411 278 AAVE----------KPITLKPGEEWTGRLQLLVV 301 (312)
Q Consensus 278 ~~~~----------~~~~L~pGe~~~~~~~i~~~ 301 (312)
|... +.++|+|||.++..+.++|.
T Consensus 307 q~~Pda~n~~~f~~~~~~L~pg~~y~~~t~y~f~ 340 (342)
T PRK11055 307 QFLPDSPNHPEWPQPDCILKPGEEYRSLTEYQFI 340 (342)
T ss_pred ccCCCcccccCCCCCCeEECCCCEEEEEEEEEEE
Confidence 9741 27899999999999999875
No 16
>PTZ00485 aldolase 1-epimerase; Provisional
Probab=99.96 E-value=4.9e-27 Score=219.60 Aligned_cols=272 Identities=11% Similarity=0.071 Sum_probs=184.2
Q ss_pred ceEEeecCCCceEEEEeCCCCCEEEEEccCcEEEEEEeC--C-C--eeEEEeCC--CCccCCCCcccccceEEcCcCCCC
Q 021411 13 AIEIAKDWNGIDQVVLRSPHGPSAKVSLYGGQITSWRNE--K-G--EELLFTSS--KAIFKPPKAIRGGISTCFPQFGNC 85 (312)
Q Consensus 13 ~~~~~~~~~~~~~~~L~n~~g~~a~v~~~Ga~l~s~~~~--~-g--~evL~~~~--~~~~~~~~~irgG~p~lfP~~gr~ 85 (312)
+|++.. .+....++|+|.+ ++++|..+||.|+|++.+ + | ++++...+ .+.+....+.. |+ ++.||.|||
T Consensus 4 ~~~~~~-~~~~~~~~L~N~~-~~v~i~n~GA~i~si~v~~~~~g~~~dvvLG~d~~~~~Y~~~~~y~-Ga-~iGr~AnRI 79 (376)
T PTZ00485 4 GIEVEP-YGYDKLVWLETDR-LKVGLTNYAASVASIQVYHPADNKWIEVNCGYPKNPEEAYADPDYM-GA-TVGRCAGRV 79 (376)
T ss_pred eeEEEe-cCCCcEEEEEeCC-EEEEEECcCcEEEEEEEEcCCCCcEEeEEECCCCCHHHHhhCCCcc-Cc-EeCCCCCeE
Confidence 345555 6778899999998 999999999999999983 3 5 57765442 23333233443 44 488999998
Q ss_pred C------------------CCCCc----eeeecCCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEE
Q 021411 86 G------------------SPELH----GFARNKLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRV 143 (312)
Q Consensus 86 ~------------------~~~~H----Gfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty 143 (312)
. ...+| ||. .+.|++..... .+..+|+|.+.+ ++...+||++++++++|
T Consensus 80 ~~G~f~ldG~~YqL~~Neg~n~LHGG~~gf~-~~~W~v~~~~~-------~~~~~V~f~~~~-~dg~~GfPG~l~v~vtY 150 (376)
T PTZ00485 80 AGGVFTLDGVKYYTQKNRGENTCHCGDDAYH-KKHWGMKLIET-------ANVIGVRFNYTS-PHMENGFPGELVSKVTY 150 (376)
T ss_pred ECCEEEECCEEEEccCCCCCcccCCCCCccc-eeeeeEEEecc-------CCCcEEEEEEEC-CCcCCCCCEEEEEEEEE
Confidence 3 22344 666 59999853221 124589999986 55679999999999999
Q ss_pred EEe--cCCcEEEE---EEEEeCCCCceeeeeeccceeecCCc-----------------Ce--eEEEcCCCCcee----e
Q 021411 144 MLA--ADGGLTLI---SRVRNINGKPFNFSFAYHTYLLVSDI-----------------SE--VRIEGLETLDYL----D 195 (312)
Q Consensus 144 ~L~--~~~~L~i~---~~v~N~~~~~~pf~~g~HpYF~~~~~-----------------~~--~~~~~l~~~~~~----d 195 (312)
+|. ++++|+|+ ++++|++++++||++++|+|||++.. .+ ++|. ...++ +
T Consensus 151 tL~~~~~~~L~i~y~a~~~~n~~d~~Tp~nltnH~YFNL~g~~~~~~~~~~~~~~~~~i~~h~L~i~---a~~~l~~de~ 227 (376)
T PTZ00485 151 SIERSKPNVLKTIYDSYIPETSPADATPVNIFNHAYWNLNGIPERNGKKNAVWVQPESVRNHWLRVP---ASRVAEADRM 227 (376)
T ss_pred EEecCCCCEEEEEEEEEeccccCCccceeeeccceeEEcCCCccccccccccccCCCcccceEEEEe---cCcEEEeCcc
Confidence 996 25889999 78899999999999999999999641 12 3333 23443 3
Q ss_pred ccccccceeecCceeee-------------------cCCcceEecCCC-------CeEEEEeCCCCcEEEEEeeCCCCEE
Q 021411 196 NLRQRERFTEQGDAVTI-------------------ESEMDRVYLRSP-------NVIAVLDHERKRTFVLRKEGLSDVV 249 (312)
Q Consensus 196 ~l~~~~~~~~~~~~~~~-------------------~~~~D~~y~~~~-------~~~~l~d~~~~~~i~i~~~~~~~~v 249 (312)
.+|+++.....+..++| .+++|++|.-.. ..+.+.++.++++++|.+ +.|.++
T Consensus 228 ~IPTG~i~~v~~t~fDfr~~~~ig~~~~~~~~~~~~~~G~Dh~fvl~~~~~~~~~~~a~l~~p~sg~~l~v~T-~~P~~q 306 (376)
T PTZ00485 228 AIPTGEFLSVEGTGLDFRQGRVIGDCIDDVALLDRDPCGYDHPLAIDGWEKGKLMLHAEAKSPVTNICMKVYS-TFPCMW 306 (376)
T ss_pred cCccCceeccCCCCccCcCCcccchhhhhhhhhcccCCCCCcceEECCCCCccccEEEEEEcCCCCCEEEEEE-CCCEEE
Confidence 46666421001111111 136899985321 146788999999999998 599999
Q ss_pred EeCCccccccccCCCCCCCCC--ceEEecceee----C-----CCeEeCCCCE-EEEEEEEEEEe
Q 021411 250 VWNPWEKRSKSMVDFGDEEYK--QMLCVDAAAV----E-----KPITLKPGEE-WTGRLQLLVVP 302 (312)
Q Consensus 250 vw~P~~~~~~~~~d~~~~~~~--~~vCvEP~~~----~-----~~~~L~pGe~-~~~~~~i~~~~ 302 (312)
||+...-.. ......+..|. .-||||||.. + ..++|+|||. +...+.++|..
T Consensus 307 iYT~n~l~~-~~~~~~g~~~~~~~giclE~Q~~PDa~n~~~~fp~~vl~pge~~~~~~t~y~f~~ 370 (376)
T PTZ00485 307 VYTANNKPL-PASGGPGQRYARWTGMGLEPQYFPDVANHYPKYPSCIVRRGERRFTETILNEFTV 370 (376)
T ss_pred EECCCCCCc-cccCCCCcCcCCCCEEEEeccCCCCcccccCCCCCeEECCCCeEEEEEEEEEEEe
Confidence 999632110 00011111233 4699999985 1 3579999999 88888888754
No 17
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism]
Probab=99.88 E-value=1.7e-20 Score=167.80 Aligned_cols=262 Identities=18% Similarity=0.272 Sum_probs=176.0
Q ss_pred ecCCCceEEEEeCCCCCEEEEEccCcEEEEEEeCC--C--eeE-EEeCC-CCccCCCCcccccceEEcCcCCCCC-----
Q 021411 18 KDWNGIDQVVLRSPHGPSAKVSLYGGQITSWRNEK--G--EEL-LFTSS-KAIFKPPKAIRGGISTCFPQFGNCG----- 86 (312)
Q Consensus 18 ~~~~~~~~~~L~n~~g~~a~v~~~Ga~l~s~~~~~--g--~ev-L~~~~-~~~~~~~~~irgG~p~lfP~~gr~~----- 86 (312)
.+.+.+..++|.|+.|++|+|..+||.|+|++.++ | .++ |-..+ +.|.....+..|. .+-.+.+||+
T Consensus 15 ~~~~~~~~~tl~n~~~l~vti~~~GATi~sL~vpd~~gk~~DVVLGfd~v~gY~~~~~~yfGa--tvGRvANRI~~G~F~ 92 (353)
T KOG1604|consen 15 DQKQTIRVYTLGNGKGLQVTIINLGATITSLKVPDKSGKLDDVVLGFDDVDGYLKDDAAYFGA--TVGRVANRIAKGKFS 92 (353)
T ss_pred cccCceEEEEecCCCeeEEEEeeCCcEEEEEEcCCcCCcccceEecccchhhhccCCcceecc--eehhhhhhcccceEE
Confidence 33566789999999999999999999999999864 3 345 42233 3333333333332 1233444552
Q ss_pred -------------CCCCce----eeecCCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCC
Q 021411 87 -------------SPELHG----FARNKLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADG 149 (312)
Q Consensus 87 -------------~~~~HG----far~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~ 149 (312)
+..+|| |. ...|++..... ...++|+..+ +++.++||++.+++++|+|..++
T Consensus 93 ldgk~y~lt~N~g~n~lHgg~~gf~-~~~w~v~~~~~---------~~~i~f~~~s-~dg~eg~PG~l~V~vtYtLn~~n 161 (353)
T KOG1604|consen 93 LDGKPYKLTVNNGKNTLHGGIKGFD-KVIWEVVKHQP---------DGVIVFSHLS-PDGDEGFPGDLKVTVTYTLNVAN 161 (353)
T ss_pred ECCceEEecccCCCccccCCccccc-ceEEEEEEecC---------CCEEEEEEEC-CCCCCCCCccEEEEEEEEEccCC
Confidence 335555 55 48999988762 1227888876 67789999999999999998668
Q ss_pred cEEEEEEEEeCCCCceeeeeeccceeecCCc-----C--eeEEEcCCCCcee--e--ccccccceeecCce---------
Q 021411 150 GLTLISRVRNINGKPFNFSFAYHTYLLVSDI-----S--EVRIEGLETLDYL--D--NLRQRERFTEQGDA--------- 209 (312)
Q Consensus 150 ~L~i~~~v~N~~~~~~pf~~g~HpYF~~~~~-----~--~~~~~~l~~~~~~--d--~l~~~~~~~~~~~~--------- 209 (312)
.|.+.++.+-. ++++|+++++|+|||+... . .++|.+ ..++ | .+|+++........
T Consensus 162 ~l~i~~~A~~~-~~~TPiNLtnHsYfNL~g~~s~~I~~heI~i~a---~~~~evd~~~iPTG~I~~v~~t~fD~r~p~~l 237 (353)
T KOG1604|consen 162 RLLIMMEATAL-DKATPINLTNHSYFNLAGHNSGGIEGHEIQIEA---SKITEVDDTLIPTGEITPVKGTTFDFRKPTVL 237 (353)
T ss_pred eeeeeehhhcc-CCCcceeeccceeEeccCCCCCCccceEEEEee---cccEecCCccccccceEeccCccccccCCeec
Confidence 99999988543 8999999999999999842 2 244443 2222 2 25665532111111
Q ss_pred ----eeec--CCcceEecCC---C-----CeEEEEeCCCCcEEEEEeeCCCCEEEeCCccccccccCCCC---CCCC--C
Q 021411 210 ----VTIE--SEMDRVYLRS---P-----NVIAVLDHERKRTFVLRKEGLSDVVVWNPWEKRSKSMVDFG---DEEY--K 270 (312)
Q Consensus 210 ----~~~~--~~~D~~y~~~---~-----~~~~l~d~~~~~~i~i~~~~~~~~vvw~P~~~~~~~~~d~~---~~~~--~ 270 (312)
-.|. .+.|..|.-. + ..+.+.++.++|.++|.+ +.|.+++|+-.- |.|+. +.-| .
T Consensus 238 gd~~~~~~~i~g~d~n~~~~~~~~~~~l~~v~k~~hp~Sgr~lEv~T-nqPgvqfYTgn~-----~~~~~gk~g~~y~k~ 311 (353)
T KOG1604|consen 238 GDRIKQFECIVGYDINYVLDGSVPPNKLRKVAKAVHPKSGRKLEVST-NQPGVQFYTGNF-----LPDIKGKKGAVYPKH 311 (353)
T ss_pred cccccccccccCCCcceEEccCCCCcccEEEEEEEcCccCcEEEEEe-CCCcEEEEeccc-----cccccCCCceEeecc
Confidence 1123 3567777421 1 246788999999999997 599999999421 22222 2223 3
Q ss_pred ceEEecceee----C----CCeEeCCCCEEEEEEEEEEEe
Q 021411 271 QMLCVDAAAV----E----KPITLKPGEEWTGRLQLLVVP 302 (312)
Q Consensus 271 ~~vCvEP~~~----~----~~~~L~pGe~~~~~~~i~~~~ 302 (312)
.++|+|++.. + ..+.|+|||++.-.+.++|..
T Consensus 312 g~~cletq~~pda~n~~~fp~v~l~pGE~Y~h~~~y~Fsv 351 (353)
T KOG1604|consen 312 GGLCLETQYFPDAVNHPNFPSVILRPGETYTHETVYKFSV 351 (353)
T ss_pred ceEEeecccCccccccCCCCceEecCCCeeeeEEEEEEec
Confidence 5899999985 1 379999999999999988864
No 18
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013. Proteins, similar to Escherichia coli c4013, are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.86 E-value=6.4e-21 Score=173.88 Aligned_cols=239 Identities=19% Similarity=0.169 Sum_probs=151.9
Q ss_pred EEEE-ccCcEEEEEEeCCCeeEEEeCCCCcc-----C--CC---CcccccceEE--cCcCCCC-----CCCCCceeeecC
Q 021411 36 AKVS-LYGGQITSWRNEKGEELLFTSSKAIF-----K--PP---KAIRGGISTC--FPQFGNC-----GSPELHGFARNK 97 (312)
Q Consensus 36 a~v~-~~Ga~l~s~~~~~g~evL~~~~~~~~-----~--~~---~~irgG~p~l--fP~~gr~-----~~~~~HGfar~~ 97 (312)
++|. ..|..|.++.. +|+++.|.+..... . .. ....||.-.- +++.|.- ..+++||.+++.
T Consensus 2 ~~vlp~rg~dI~~~~~-~g~~l~w~s~~~~~~~~~~~~~~~~~~~~~~gg~~~~cGl~~~g~p~~~~~~~~~lHG~~~~~ 80 (284)
T cd09023 2 FEVLPDRGMDIGRASY-KGIPLGWLSPVGLVVPPYYESEGGGGWRSFFGGLLTTCGLDHIGHPEVDDGEEYPLHGRISNT 80 (284)
T ss_pred ceEcccCCcceeeeEE-CCEEeccCCCCCCCCCccccCCCchhHhhcCCEEEEeECccccCCCCcCCCccccCcccccCC
Confidence 4566 88999999988 59999998753222 1 00 1123344444 5566643 257999999999
Q ss_pred CcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCCcEEEEEEEEeCCCCceeeeeeccceeec
Q 021411 98 LWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADGGLTLISRVRNINGKPFNFSFAYHTYLLV 177 (312)
Q Consensus 98 ~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~~ 177 (312)
+|+++.... ++++...|++.....+....+|||.++.+++|+|. +++|+++.+|+|+|+++||+++++||||..
T Consensus 81 p~~~~~~~~-----~~~~~~~v~l~~~~~~~~~~g~~~~l~~~i~~~l~-~~~l~i~~~VtN~g~~~~P~~~~~H~n~~~ 154 (284)
T cd09023 81 PAELVGVEE-----DEEGDYEIEVSGEVREAALFGENLRLERTIETDLG-SNEIRLEDRVTNEGFRPTPHMLLYHVNFGY 154 (284)
T ss_pred CcceEEEEe-----ccCCCeEEEEEEEEEEeeeecCceEEEEEEEEecC-CceEEEEEEEEeCCCCCCcceEEeeEEcCC
Confidence 999987652 01234455555543333346799999999999999 899999999999999999999999999988
Q ss_pred CCcC-eeEEEcCCCCcee--e-ccccccc-eeecCceeeecCCcceEecC-----C--CCeEEEEeCCCCcEEEEEee--
Q 021411 178 SDIS-EVRIEGLETLDYL--D-NLRQRER-FTEQGDAVTIESEMDRVYLR-----S--PNVIAVLDHERKRTFVLRKE-- 243 (312)
Q Consensus 178 ~~~~-~~~~~~l~~~~~~--d-~l~~~~~-~~~~~~~~~~~~~~D~~y~~-----~--~~~~~l~d~~~~~~i~i~~~-- 243 (312)
+... +.++... ...+. + ....+.. ......+ .....+.+|.. . ...+.|.++..+..+.|..+
T Consensus 155 p~l~~~~~l~~p-~~~~~p~~~~~~~~~~~~~~~~~p--~~~~~e~v~~~~~~~d~~g~~~~~l~~~~~g~~~~l~~~~~ 231 (284)
T cd09023 155 PLLDEGARLEIP-SKEVTPRDAHAAEGLASWNTYLAP--TPGFAEQVYFHEPAADEDGRAPAALVNPRLGLGVEVRFDTD 231 (284)
T ss_pred cccCCCCEEEec-ccccccCChhhcccccccccccCC--CCCCccEEEEEeccccCCCceeEEEEcCCCCcEEEEEEehh
Confidence 6432 3444321 11111 1 0000000 0000000 00111223311 1 13577888777767777754
Q ss_pred CCCCEEEeCCccccccccCCCCCCCCCceEEecceee-----------CCCeEeCCCCEEEEEE
Q 021411 244 GLSDVVVWNPWEKRSKSMVDFGDEEYKQMLCVDAAAV-----------EKPITLKPGEEWTGRL 296 (312)
Q Consensus 244 ~~~~~vvw~P~~~~~~~~~d~~~~~~~~~vCvEP~~~-----------~~~~~L~pGe~~~~~~ 296 (312)
.+|++++|+.... -+..+||||+|+ .+++.|+|||+++..+
T Consensus 232 ~~p~~~~W~~~~~------------~~y~lalEP~T~~p~~~~~~~~~g~l~~L~PGEs~~~~l 283 (284)
T cd09023 232 TLPYLTQWKNTGA------------GAYVLGLEPATNFPNGRAFEREQGELPTLAPGESRSYRL 283 (284)
T ss_pred hCCHHHHHhccCC------------CccEEEEccccCCCcchHHHHHCCCcceECCCCeEEEee
Confidence 5999999996422 135678999997 1589999999998764
No 19
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A.
Probab=99.43 E-value=4.9e-12 Score=116.04 Aligned_cols=253 Identities=18% Similarity=0.197 Sum_probs=132.9
Q ss_pred CCceEEEEeCCCCCEEEEE-ccCcEEEEEEeCCCeeEEEeCCCC-----ccC---CCCccc--ccc-eEE-cCcCCCCC-
Q 021411 21 NGIDQVVLRSPHGPSAKVS-LYGGQITSWRNEKGEELLFTSSKA-----IFK---PPKAIR--GGI-STC-FPQFGNCG- 86 (312)
Q Consensus 21 ~~~~~~~L~n~~g~~a~v~-~~Ga~l~s~~~~~g~evL~~~~~~-----~~~---~~~~ir--gG~-p~l-fP~~gr~~- 86 (312)
.|+..++|+|+.|++++|. ..|..|.+... +|+++-|.++.. +++ .....| +|. .-| +...|.-.
T Consensus 2 ~Gv~~l~i~N~~gl~~~vlp~rg~dI~~~~~-~G~~l~w~s~~~~~~P~~~~~~~g~~~l~~f~g~l~tcGl~~~G~P~~ 80 (302)
T PF14486_consen 2 RGVRALEIRNGGGLRFTVLPDRGMDIWDAEF-DGVNLGWHSPFGLVHPAYYDSPGGLGWLRTFGGFLFTCGLDNNGAPSE 80 (302)
T ss_dssp TT-EEEEEEETTS-EEEEETTTTTEEEEEEE-TTEEE----S-----GGG--HHHHTGGGGT---SEEEEEES--SS-EE
T ss_pred CCcEEEEEECCCCcEEEEecccCCceEEEEE-CCEEecccCCCcCCCCccccccCCcchhhcccchheeeccccCCCCCC
Confidence 5889999999777999999 99999999998 599999987642 211 000111 011 111 11233221
Q ss_pred ----CCCCceeeecCCcEEecCCCCCCCCCCCCceEEEE--EecCCCCCCCcCCceeEEEEEEEE--ecCCcEEEEEEEE
Q 021411 87 ----SPELHGFARNKLWIIDDNPPPMPPNDSDGKTCVDL--LLKPSEEDPKCWPYSFEYRLRVML--AADGGLTLISRVR 158 (312)
Q Consensus 87 ----~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l--~l~~~~~~~~~~P~~f~l~~ty~L--~~~~~L~i~~~v~ 158 (312)
.+++||-..+.+|+.+..+. ++++...|++ .++. ...|-.+++++-++++ . .+.++|+.+|+
T Consensus 81 ~~g~~~~LHG~i~~~Pa~~v~~~~-----~~~~~~~i~v~G~v~~----~~~fg~~l~l~r~i~~~~g-~~~i~i~d~Vt 150 (302)
T PF14486_consen 81 DDGETYPLHGRISNTPAEHVWLEI-----WDGDGYEIEVSGEVRE----AAGFGENLRLERTIRLRAG-SNTIRIEDRVT 150 (302)
T ss_dssp ETTEEE-TTBSGGGS--SEEEEEE-----ESSTT--EEEEEEEEE----EETTTEEEEEEEEEEE-TT--SEEEEEEEEE
T ss_pred cCCccccccccccCCCcceEEEEE-----ecCCCcEEEEEEEEEE----EEeccCcEEEEEEEEEECC-CcEEEEEEEEE
Confidence 37999999999997554431 0122333443 3332 1345566777766776 5 57899999999
Q ss_pred eCCCCceeeeeeccceeecCCcC-eeEEEcCCCCcee---eccccccceeecCceeee--cCCcceEec-----CCCC--
Q 021411 159 NINGKPFNFSFAYHTYLLVSDIS-EVRIEGLETLDYL---DNLRQRERFTEQGDAVTI--ESEMDRVYL-----RSPN-- 225 (312)
Q Consensus 159 N~~~~~~pf~~g~HpYF~~~~~~-~~~~~~l~~~~~~---d~l~~~~~~~~~~~~~~~--~~~~D~~y~-----~~~~-- 225 (312)
|.+..|+|+.+.+|.=|..+-.+ ..++.. +...+. +....+.. .-..+.- ...-+.||. +..+
T Consensus 151 N~~~~p~p~m~lyH~N~G~pll~eg~ri~~-p~~~~~~~~~~a~~~~~---~~~~~~~P~~~~~E~Vy~~~~~~d~~G~~ 226 (302)
T PF14486_consen 151 NLGFQPMPLMYLYHMNFGYPLLDEGARIVA-PTKEVTPRDDRAAEGIA---DWDRMPAPQPGFPEQVYFHDLLADEDGWA 226 (302)
T ss_dssp E-SSS-EEEEEEEEEEE-TTT-STT-EEE---EEEEEESSGGGGGGST---TTTB---S-TT---EEEEEEE---TTSEE
T ss_pred ECCCCCchhHHhhhhccCccccCCCcEEEc-CcccccCCchhhhcCCc---cceecCCCCCCCCcEEEEecccccCCCcE
Confidence 99999999999999999888322 233331 111111 11110000 0000000 011233442 1122
Q ss_pred eEEEEeCCCCcEEEEEe--eCCCCEEEeCCccccccccCCCCCCCCCceEEecceee----------C-CCeEeCCCCEE
Q 021411 226 VIAVLDHERKRTFVLRK--EGLSDVVVWNPWEKRSKSMVDFGDEEYKQMLCVDAAAV----------E-KPITLKPGEEW 292 (312)
Q Consensus 226 ~~~l~d~~~~~~i~i~~--~~~~~~vvw~P~~~~~~~~~d~~~~~~~~~vCvEP~~~----------~-~~~~L~pGe~~ 292 (312)
.+.|..+..+..+.|.. +.+|++.+|-.... ....++|||.|+ . .++.|+|||+.
T Consensus 227 ~~~l~n~~~g~g~~v~f~~~~lP~~~~Wk~~~~------------~~yv~gLEP~T~~p~g~~~~~~~G~l~~L~pge~~ 294 (302)
T PF14486_consen 227 HAALVNPDGGLGFEVRFDTSQLPYLTQWKNYGG------------GEYVLGLEPATCRPEGRAAAREAGTLPMLAPGESR 294 (302)
T ss_dssp EEEEE-SSSS-EEEEEEETTTS-EEEEEEEES-------------T-EEEEEEEESS-SS-HHHHHHTT--EEE-TT-EE
T ss_pred EEEEECCCCCcEEEEEEchHHCChhHhheeCCC------------CEeEEEEecccCCCCCHHHHHhCCCcceECCCCeE
Confidence 36677887778777775 57999999975322 135689999997 1 47899999999
Q ss_pred EEEEEEEE
Q 021411 293 TGRLQLLV 300 (312)
Q Consensus 293 ~~~~~i~~ 300 (312)
+.+++++|
T Consensus 295 ~~~l~~~v 302 (302)
T PF14486_consen 295 EFSLEFGV 302 (302)
T ss_dssp EEEEEEE-
T ss_pred EEEEEecC
Confidence 99988865
No 20
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechani
Probab=99.38 E-value=1.8e-11 Score=111.72 Aligned_cols=188 Identities=12% Similarity=0.079 Sum_probs=108.5
Q ss_pred CCCCceeeecCCcE----EecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecC--CcEEEEEEEEeC
Q 021411 87 SPELHGFARNKLWI----IDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAAD--GGLTLISRVRNI 160 (312)
Q Consensus 87 ~~~~HGfar~~~W~----v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~--~~L~i~~~v~N~ 160 (312)
.+++||-..+.+|+ ++..+ ++...+++.-.. ....+||++|+++.+|+|. . +.|+|+++|+|+
T Consensus 61 ~~~LHG~~~~~p~~~~w~~~~~d--------~~~~~l~l~g~~--~~~~~fg~~y~a~~~i~L~-~g~~~l~i~~~VtN~ 129 (293)
T cd09269 61 THPLHGEFPCAPMDEAWLEVGED--------ASGDYLALTGEY--EYVQGFGHHYLAQPSVTLR-AGSALFDIGMDVTNL 129 (293)
T ss_pred ccCCcCCcCCCCccceEEEEEec--------CCCCEEEEEEEE--EeeeccCccEEEEEEEEEe-CCCCEEEEEEEEEEC
Confidence 57999995555554 44322 123344444332 2236899999999999998 6 889999999999
Q ss_pred CCCceeeeeeccceeecCCcCeeEEEcCCC-Cceeecccc-----c-c-ce----eecCceee-e--cCC--cceEecC-
Q 021411 161 NGKPFNFSFAYHTYLLVSDISEVRIEGLET-LDYLDNLRQ-----R-E-RF----TEQGDAVT-I--ESE--MDRVYLR- 222 (312)
Q Consensus 161 ~~~~~pf~~g~HpYF~~~~~~~~~~~~l~~-~~~~d~l~~-----~-~-~~----~~~~~~~~-~--~~~--~D~~y~~- 222 (312)
++.|||+++++|+||.......+...-+.. ......++. . . .+ ..+...+. + ... -..||..
T Consensus 130 g~~p~p~~~~~H~nfg~~~garl~~p~~~~~~~~~~~~p~~v~p~~~w~~~~~~~~~~~~~~~~~~~P~~~~~E~V~~~~ 209 (293)
T cd09269 130 SAQPMPLMYMCHMNYAYVEGARIVQNLPDEAFVLRRSVPAHVKPTPAWLAYNEALVADPARGDVLDKPDLYDPEIVFFAD 209 (293)
T ss_pred CCCCChhhEecccccCCCCCCEEEccCCcccceeeecccCccCCchhhccchHHHhhCchhhhhccCCCCCCccEEEEee
Confidence 999999999999999874333222111100 000000110 0 0 00 00000000 0 000 1223321
Q ss_pred C------CCeEEEEeCCCCcEEEEE--eeCCCCEEEeCCccccccccCCCCCCCCCceEEe-cceee-----------CC
Q 021411 223 S------PNVIAVLDHERKRTFVLR--KEGLSDVVVWNPWEKRSKSMVDFGDEEYKQMLCV-DAAAV-----------EK 282 (312)
Q Consensus 223 ~------~~~~~l~d~~~~~~i~i~--~~~~~~~vvw~P~~~~~~~~~d~~~~~~~~~vCv-EP~~~-----------~~ 282 (312)
. ...+.|.++.++ .+.++ ++.+|++..|--... .+.-..+ ||.|+ ..
T Consensus 210 ~~~~~~~~~~~~l~n~~g~-~~~~~f~~~~lP~~~~W~~~~~------------~~~v~~~~~PaT~~p~g~~~ar~~G~ 276 (293)
T cd09269 210 DLGKYTGWAHFMMVHPDGD-AFYTRFSTAEFPYATRWILYNG------------DQQVAAFALPATCRPEGYLAAKEAGT 276 (293)
T ss_pred cccccCCcEEEEEECCCCC-EEEEEEchhhCChhheehhcCC------------CcceEEEEccCCCCcCChHHHHHCCC
Confidence 1 135667777644 56665 467999999973221 1244556 59997 14
Q ss_pred CeEeCCCCEEEEEEEE
Q 021411 283 PITLKPGEEWTGRLQL 298 (312)
Q Consensus 283 ~~~L~pGe~~~~~~~i 298 (312)
.+.|+|||+.+..+++
T Consensus 277 l~~L~pGe~~~f~l~~ 292 (293)
T cd09269 277 LRTLAPGETRRFSVTT 292 (293)
T ss_pred cceeCCCCeEEEEEec
Confidence 7899999999887653
No 21
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=98.24 E-value=0.0015 Score=59.42 Aligned_cols=127 Identities=17% Similarity=0.146 Sum_probs=78.6
Q ss_pred ceEEEEeCCCCCEEEEE-ccCcEEEEEEeCCCeeEEEeCCCC---ccC---CCCcccccceEEc--Cc-CCCCC--CCCC
Q 021411 23 IDQVVLRSPHGPSAKVS-LYGGQITSWRNEKGEELLFTSSKA---IFK---PPKAIRGGISTCF--PQ-FGNCG--SPEL 90 (312)
Q Consensus 23 ~~~~~L~n~~g~~a~v~-~~Ga~l~s~~~~~g~evL~~~~~~---~~~---~~~~irgG~p~lf--P~-~gr~~--~~~~ 90 (312)
..+++|+|+. +++.|. ..|++|+++...+|.++|+..... ... ..-..+||- -+| |. .-|.. ..+.
T Consensus 4 ~~~~~l~N~~-i~l~Vtp~~GgRIl~~~~~g~~N~~~~~~~~~~~~~~~~~~~~~~~GGh-rlW~~Pe~~~r~~~~~~~P 81 (274)
T PF14315_consen 4 GNCLRLSNGD-IELIVTPDVGGRILSFGLNGGENLFGEANEIQPAPGVSGDSGWINYGGH-RLWPSPENPPRTSKWVWPP 81 (274)
T ss_pred ceEEEEECCC-EEEEEecCCCCEEEEEEeCCCceEEeeccccccccccCCcccccCCCcc-eeecCCCCccccccccCCC
Confidence 3689999999 999999 999999999887778888543321 111 111223333 233 22 00100 0111
Q ss_pred ceeeecCCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCCc--EEEEEEEEeCCCCceeee
Q 021411 91 HGFARNKLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADGG--LTLISRVRNINGKPFNFS 168 (312)
Q Consensus 91 HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~--L~i~~~v~N~~~~~~pf~ 168 (312)
--+..+.+|+++. . ...|+|+-..++. ..++++.+|+|. +++ ++|+.+++|.++.+.++.
T Consensus 82 d~~ld~~p~~~~~-~----------~~~v~L~s~~~~~------tgiq~~~~i~l~-~~~~~i~v~~~i~N~~~~~~~~a 143 (274)
T PF14315_consen 82 DPVLDNGPYEVEI-D----------DDGVRLTSPPSPK------TGIQKERTITLD-ADRPSIEVTHRITNIGDWPVEWA 143 (274)
T ss_pred cccccCCceeEEE-c----------CCEEEEecCCCCc------cCcEEEEEEEEC-CCCCEEEEEEEEEeCCCCcceee
Confidence 1122356676665 2 4566666543322 257899999998 555 999999999999987654
Q ss_pred e
Q 021411 169 F 169 (312)
Q Consensus 169 ~ 169 (312)
+
T Consensus 144 ~ 144 (274)
T PF14315_consen 144 P 144 (274)
T ss_pred e
Confidence 4
No 22
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=95.27 E-value=0.38 Score=45.46 Aligned_cols=118 Identities=18% Similarity=0.214 Sum_probs=68.8
Q ss_pred ceEEEEeCCCCCEEEEEccCcEEEEEEeCCC--------eeEEEeCCCCccCCCCcccccceEEcC-cCCCCCC-CCCce
Q 021411 23 IDQVVLRSPHGPSAKVSLYGGQITSWRNEKG--------EELLFTSSKAIFKPPKAIRGGISTCFP-QFGNCGS-PELHG 92 (312)
Q Consensus 23 ~~~~~L~n~~g~~a~v~~~Ga~l~s~~~~~g--------~evL~~~~~~~~~~~~~irgG~p~lfP-~~gr~~~-~~~HG 92 (312)
-..++|+|+. ++++|+..||.|.++..++- ..+....+.. ...|+ ..|.++. .+.-.
T Consensus 73 ~~~i~v~td~-~~~~is~~Gg~i~~~~Lk~y~~~~~~~~~pv~L~~~~~------------~~~y~~~~gl~~~~~~~~~ 139 (366)
T TIGR03593 73 AKRITVKTDV-LRASISTKGGDIDSLELKKYKETLDKDSPPVLLLSDGA------------ERLYVAQSGLIGANGADLA 139 (366)
T ss_pred CCeEEEECCe-EEEEEeCCCceeeeeccccCccccCCCCCcEEeecCCC------------CceeEEEeccccCCCCccc
Confidence 3579999999 99999999999999987421 2221111111 00111 1121111 01000
Q ss_pred -eeecCCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCC--cEEEEEEEEeCCCCcee
Q 021411 93 -FARNKLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADG--GLTLISRVRNINGKPFN 166 (312)
Q Consensus 93 -far~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~--~L~i~~~v~N~~~~~~p 166 (312)
...+..|++....-.. .++...|+|++.... ...++.+|+|. ++ .+.++++|+|.++.+..
T Consensus 140 ~~~~~~~~~~~~~~~~l----~~~~~~v~l~~~~~~--------G~~v~k~ytf~-~~sY~i~v~~~v~N~~~~~~~ 203 (366)
T TIGR03593 140 LPGHRTVWQAEGGEYTL----TPGQLPVTLTWDNSN--------GVTVTKTYTFD-RDSYLIDVEYKVTNNGDAPVS 203 (366)
T ss_pred CCCCCceEEeCCCceee----CCCCEEEEEEEECCC--------CeEEEEEEEEe-CCeEEEEeEEEEEeCCCCCee
Confidence 1345678776432000 122356777765321 47899999998 55 68889999999987654
No 23
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=94.81 E-value=0.6 Score=41.93 Aligned_cols=121 Identities=12% Similarity=0.155 Sum_probs=58.4
Q ss_pred EEEEeCCCCCEEEEEccCcEEEEEEeC--------CCeeEEEeCCCCccCCCCcccccceEEcCcCCCCCCCCCceeeec
Q 021411 25 QVVLRSPHGPSAKVSLYGGQITSWRNE--------KGEELLFTSSKAIFKPPKAIRGGISTCFPQFGNCGSPELHGFARN 96 (312)
Q Consensus 25 ~~~L~n~~g~~a~v~~~Ga~l~s~~~~--------~g~evL~~~~~~~~~~~~~irgG~p~lfP~~gr~~~~~~HGfar~ 96 (312)
.++|+|+. ++++|+..||.|.++..+ ++.++-...+.. .........+.++..|+. ..- .+
T Consensus 1 ~v~ven~~-~~~~~s~~GG~i~~~~Lk~y~~~~~~~~~pv~L~~~~~----~~~~~~~~~l~~~~~~~~----~~~--~~ 69 (270)
T PF14849_consen 1 RVTVENDL-FKVTFSSKGGRIKSVELKKYKNTLDPDSKPVELVDDSD----EENYPLAFGLVFNTGGAQ----LPT--ND 69 (270)
T ss_dssp -EEEE-SS--EEEEETBTTEEEEEEEEEEESSTT-SS-EEEECEEET----TEEEEEEEEEESTT--TT----SGG--S-
T ss_pred CEEEECCC-EEEEEECCCCeEEEEEcCCCccccCCCCCceEEecCCC----CcceEEEEcccccCcccc----CCC--cc
Confidence 37899999 999999999999999863 111331111110 000011223333222221 111 46
Q ss_pred CCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCC--cEEEEEEEEeCCCCceee
Q 021411 97 KLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADG--GLTLISRVRNINGKPFNF 167 (312)
Q Consensus 97 ~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~--~L~i~~~v~N~~~~~~pf 167 (312)
..|++...+... .+..+..+++|+..... .+.++.+|+|. ++ .+.++++++|.++.+...
T Consensus 70 ~~f~~~~~~~~l--~~~~~~~~vtf~~~~~~--------g~~i~k~ytf~-~~~Y~~~~~i~~~n~~~~~~~~ 131 (270)
T PF14849_consen 70 LYFSVSQKSYTL--KEGGDSQSVTFTAQLGN--------GLTITKTYTFK-PDSYLVDLEISVTNLSDQPVSL 131 (270)
T ss_dssp -B-B-S-SEEE----TT-SEEEEEEEEE-TT--------S-EEEEEEEEE-TT--EEEEEEEEE--SSS-EEE
T ss_pred ceEEEcCCceee--ccCCCceEEEEEEECCC--------CEEEEEEEEEc-CCcEEEEEEEEEECCCCCcccc
Confidence 778776531000 00123677888876431 36899999998 44 477777888988776655
No 24
>PRK01318 membrane protein insertase; Provisional
Probab=93.55 E-value=1.9 Score=42.75 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=66.2
Q ss_pred EEEEeCCCCCEEEEEccCcEEEEEEeCCC-------eeEEEeCCCCccCCCCcccccceEEcCcCCCCCCCCCceeee-c
Q 021411 25 QVVLRSPHGPSAKVSLYGGQITSWRNEKG-------EELLFTSSKAIFKPPKAIRGGISTCFPQFGNCGSPELHGFAR-N 96 (312)
Q Consensus 25 ~~~L~n~~g~~a~v~~~Ga~l~s~~~~~g-------~evL~~~~~~~~~~~~~irgG~p~lfP~~gr~~~~~~HGfar-~ 96 (312)
.++|+|+. ++++|++.||.|.++..++- .++...++.. .. .-+.-+=|.|.-+ +.+--.. +
T Consensus 40 ~i~v~td~-~~~~is~~Gg~i~~~~Lk~y~~~~~~~~p~~L~~~~~---~~-----~y~~~~g~~~~~~--~~~~~~~~~ 108 (521)
T PRK01318 40 RITVETDV-LRLSIDTKGGRIDDLLLKKYKETLDSSPPVVLLSPST---EH-----PYFAQSGLTGADG--PDNVPNPDR 108 (521)
T ss_pred EEEEEcCc-EEEEEECCCCeeeeeeccCCccccCCCCCEEEecCCC---Cc-----ceeeeeccccCCC--cccccCCCC
Confidence 88999999 99999999999999987521 1221111110 00 0011111221100 1110011 3
Q ss_pred CCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCC--cEEEEEEEEeCCCCceee
Q 021411 97 KLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADG--GLTLISRVRNINGKPFNF 167 (312)
Q Consensus 97 ~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~--~L~i~~~v~N~~~~~~pf 167 (312)
..|+........ .+.++...|+|++... ...+++.+|+|. ++ .++++++++|.++.++..
T Consensus 109 ~~~~~~~~~~~~--~~~~~~~~v~~~~~~~--------~g~~~~k~yt~~-~~~Y~~~~~~~v~n~~~~~~~~ 170 (521)
T PRK01318 109 TLYTADGDSLVL--ADGQNELPVTLTWTNG--------NGLTFTKTYTLD-RGDYMFTVEYSVNNNSGAPVNL 170 (521)
T ss_pred cceeecccceee--ccCCCceEEEEEEECC--------CCeEEEEEEEEc-CCceEEEEEEEEEcCCCCceee
Confidence 567665221100 0012355677877532 146789999997 44 488899999987775543
No 25
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). This domain adopts a beta-sandwich fold, in which two layers of anti-parallel beta-sheets are arranged in a nearly parallel fashion. The exact function of this domain is, as yet, unknown, however it has been proposed that it may play a role in transglycosylation reactions []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=87.22 E-value=7.6 Score=35.33 Aligned_cols=129 Identities=18% Similarity=0.229 Sum_probs=64.4
Q ss_pred CCCceEEEEeCCCCCEEEEE-ccCcEEEEEEeC-CCeeE---EEeCCCCccCCC-----Ccccccce-------------
Q 021411 20 WNGIDQVVLRSPHGPSAKVS-LYGGQITSWRNE-KGEEL---LFTSSKAIFKPP-----KAIRGGIS------------- 76 (312)
Q Consensus 20 ~~~~~~~~L~n~~g~~a~v~-~~Ga~l~s~~~~-~g~ev---L~~~~~~~~~~~-----~~irgG~p------------- 76 (312)
..|.+.+.++++. +.+.|. ..||.|..|-.. ...|+ |-...++|.... ..--.|+.
T Consensus 4 ~Dg~~E~~~~~~~-~~~~~~~~~gg~~~E~d~~~~~~N~~~tl~r~~E~Yh~~~~~~~~~~~~~gi~siH~~~~~~~~~~ 82 (278)
T PF09095_consen 4 FDGREEVLLQNES-LNAYFKPAYGGSLFELDVKRSAHNLLDTLTRRPEAYHEKIAAQQEESEGEGIASIHDRVKFKDEEL 82 (278)
T ss_dssp SSSS-EEEEE-SS-EEEEEETTTTTEEEEEEETTTTEETT--------GGG--------------------------HHH
T ss_pred CCCcceEEEECCc-EEEEEeeCCCcEEEEEcccCccccccccccCCCccccchhccccccCCCCCccchhhcccccCccc
Confidence 5788999999999 999999 559999999874 34444 433344443322 00011111
Q ss_pred ---EEcCcCCCCC------------------CCCCceeeecCCcEEecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCc
Q 021411 77 ---TCFPQFGNCG------------------SPELHGFARNKLWIIDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPY 135 (312)
Q Consensus 77 ---~lfP~~gr~~------------------~~~~HGfar~~~W~v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~ 135 (312)
+.+=|--|.. ...-=|---+++|++.... .. |+|.-... ..+.
T Consensus 83 ~~~l~yD~~~R~sf~Dhf~~~~~tle~~~~~~~~e~gDF~~~~y~~~~~~----------~~-v~f~r~G~-----~~~~ 146 (278)
T PF09095_consen 83 KEDLVYDWYPRRSFIDHFLPPDTTLEDFIQGSFRELGDFANQPYELEVNR----------DE-VTFERDGG-----VEGH 146 (278)
T ss_dssp HTT----SS---EEEEEEE-TT--HHHHHTTTS---BS-SSS--EEEEES----------SE-EEEEEEEE-----ESEE
T ss_pred cccccCCCccCceeEEEecCCCCCHHHHhcCchhhhhhccCCceEEEecC----------Cc-eEEEEecc-----cccC
Confidence 0011111110 0011121125778776544 12 55554321 1567
Q ss_pred eeEEEEEEEEecCCcEEEEEEEEeCCCCceee
Q 021411 136 SFEYRLRVMLAADGGLTLISRVRNINGKPFNF 167 (312)
Q Consensus 136 ~f~l~~ty~L~~~~~L~i~~~v~N~~~~~~pf 167 (312)
+..++-+|+|. +++|.++|+++ .++.+..+
T Consensus 147 ~~~l~K~y~l~-~~~l~V~Y~l~-~~~~~~~~ 176 (278)
T PF09095_consen 147 PITLEKRYRLT-KNGLQVDYRLT-ESPEPISL 176 (278)
T ss_dssp EEEEEEEEEEE-TTEEEEEEEEE--ESS---E
T ss_pred ceEEEEEEEEc-CCEEEEEEEEE-ECCCCcce
Confidence 89999999999 89999999998 55554433
No 26
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=75.72 E-value=4.1 Score=30.79 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=23.9
Q ss_pred EEEEecCCcEEEEEEEEeCCCCceeeeeeccceee
Q 021411 142 RVMLAADGGLTLISRVRNINGKPFNFSFAYHTYLL 176 (312)
Q Consensus 142 ty~L~~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~ 176 (312)
.++|. ....+++++|.|+||+|. +.|-|-.|.
T Consensus 12 ~IelN-~gr~~~~i~V~NtGDRPI--QVGSHfHF~ 43 (106)
T COG0832 12 DIELN-AGRPTVTIEVANTGDRPI--QVGSHFHFF 43 (106)
T ss_pred cEEEe-CCCcceEEEEeecCCCce--Eeecceeeh
Confidence 35666 677889999999999855 666666663
No 27
>PRK13203 ureB urease subunit beta; Reviewed
Probab=71.75 E-value=5.7 Score=30.17 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=23.3
Q ss_pred EEEecCCcEEEEEEEEeCCCCceeeeeeccceee
Q 021411 143 VMLAADGGLTLISRVRNINGKPFNFSFAYHTYLL 176 (312)
Q Consensus 143 y~L~~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~ 176 (312)
+.|. .+.=+++++|+|+||+|. +.|-|-.|-
T Consensus 13 I~ln-~gr~~~~l~V~NtGDRPI--QVGSH~HF~ 43 (102)
T PRK13203 13 IELN-AGRETVTLTVANTGDRPI--QVGSHYHFF 43 (102)
T ss_pred EEeC-CCCCEEEEEEEeCCCCce--EEccccchh
Confidence 4566 667789999999999854 666776663
No 28
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=71.58 E-value=5.7 Score=30.16 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=23.5
Q ss_pred EEEecCCcEEEEEEEEeCCCCceeeeeeccceee
Q 021411 143 VMLAADGGLTLISRVRNINGKPFNFSFAYHTYLL 176 (312)
Q Consensus 143 y~L~~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~ 176 (312)
+.|. .+.=+++++|+|+||+| ++.|-|-.|-
T Consensus 13 I~lN-~gr~~~~l~V~NtGDRp--IQVGSH~HF~ 43 (101)
T cd00407 13 IELN-AGREAVTLKVKNTGDRP--IQVGSHYHFF 43 (101)
T ss_pred eEeC-CCCCEEEEEEEeCCCcc--eEEccccchh
Confidence 4666 66778999999999985 5667776663
No 29
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=71.49 E-value=6 Score=30.02 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=23.5
Q ss_pred EEEecCCcEEEEEEEEeCCCCceeeeeeccceee
Q 021411 143 VMLAADGGLTLISRVRNINGKPFNFSFAYHTYLL 176 (312)
Q Consensus 143 y~L~~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~ 176 (312)
+.|. .+.=+++++|+|+||+| ++.|-|-.|-
T Consensus 13 I~ln-~gr~~~~l~V~NtGDRP--IQVGSHyHF~ 43 (101)
T TIGR00192 13 ITIN-EGRKTVSVKVKNTGDRP--IQVGSHFHFF 43 (101)
T ss_pred EEeC-CCCcEEEEEEEeCCCcc--eEEccccchh
Confidence 4666 66778999999999985 5667776663
No 30
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=69.60 E-value=5.5 Score=30.14 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=21.8
Q ss_pred EEEecCCcEEEEEEEEeCCCCceeeeeeccceee
Q 021411 143 VMLAADGGLTLISRVRNINGKPFNFSFAYHTYLL 176 (312)
Q Consensus 143 y~L~~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~ 176 (312)
+.|. .+.=+++++|+|+||+| ++.|-|-.|.
T Consensus 12 I~lN-~gr~~~~l~V~N~GDRP--IQVGSH~HF~ 42 (100)
T PF00699_consen 12 IELN-AGRERITLEVTNTGDRP--IQVGSHYHFF 42 (100)
T ss_dssp EETT-TTSEEEEEEEEE-SSS---EEEETTS-GG
T ss_pred EEec-CCCcEEEEEEEeCCCcc--eEEccccCHH
Confidence 4565 67789999999999985 5777777774
No 31
>PRK13202 ureB urease subunit beta; Reviewed
Probab=65.62 E-value=9.6 Score=29.06 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=22.4
Q ss_pred EEEecCCc-EEEEEEEEeCCCCceeeeeeccceee
Q 021411 143 VMLAADGG-LTLISRVRNINGKPFNFSFAYHTYLL 176 (312)
Q Consensus 143 y~L~~~~~-L~i~~~v~N~~~~~~pf~~g~HpYF~ 176 (312)
+.|. .+. =+++++|+|+||+|. +.|-|-.|-
T Consensus 13 I~ln-~grr~~~~l~V~NtGDRPI--QVGSHyHF~ 44 (104)
T PRK13202 13 IEMN-AAALSRLQMRIINAGDRPV--QVGSHVHLP 44 (104)
T ss_pred EEeC-CCCCceEEEEEEeCCCCce--EEccccchh
Confidence 4566 453 688999999999854 667776663
No 32
>PRK13201 ureB urease subunit beta; Reviewed
Probab=65.24 E-value=8.8 Score=30.59 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=22.9
Q ss_pred EEEecCCcEEEEEEEEeCCCCceeeeeecccee
Q 021411 143 VMLAADGGLTLISRVRNINGKPFNFSFAYHTYL 175 (312)
Q Consensus 143 y~L~~~~~L~i~~~v~N~~~~~~pf~~g~HpYF 175 (312)
+.|. .+.=++++.|+|+||+|+ +.|-|-.|
T Consensus 13 I~lN-~gr~~~~l~V~NtGDRPI--QVGSHyHF 42 (136)
T PRK13201 13 VEIN-NHHPETVIEVENTGDRPI--QVGSHFHF 42 (136)
T ss_pred eEeC-CCCCEEEEEEEeCCCcce--Eeccccch
Confidence 4566 667789999999999855 66667666
No 33
>PRK13205 ureB urease subunit beta; Reviewed
Probab=63.46 E-value=9.7 Score=31.07 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=23.5
Q ss_pred EEEecCCcEEEEEEEEeCCCCceeeeeeccceee
Q 021411 143 VMLAADGGLTLISRVRNINGKPFNFSFAYHTYLL 176 (312)
Q Consensus 143 y~L~~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~ 176 (312)
+.|. .+.=+++++|+|+||+| ++.|-|-.|-
T Consensus 13 IelN-~GR~~i~L~V~NtGDRP--IQVGSHyHF~ 43 (162)
T PRK13205 13 LTGN-VGREAKTIEIINTGDRP--VQIGSHFHFA 43 (162)
T ss_pred eEeC-CCCcEEEEEEEeCCCCc--eEeccccchh
Confidence 4666 66778999999999985 5667776663
No 34
>PRK13204 ureB urease subunit beta; Reviewed
Probab=62.91 E-value=10 Score=31.02 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=23.8
Q ss_pred EEEEecCCcEEEEEEEEeCCCCceeeeeecccee
Q 021411 142 RVMLAADGGLTLISRVRNINGKPFNFSFAYHTYL 175 (312)
Q Consensus 142 ty~L~~~~~L~i~~~v~N~~~~~~pf~~g~HpYF 175 (312)
.+.|. .+.=+++++|+|+||+|+ +.|-|-.|
T Consensus 35 ~I~lN-~gr~~~~l~V~NtGDRPI--QVGSHyHF 65 (159)
T PRK13204 35 PIEIN-QGRPRTTLTVRNTGDRPI--QIGSHFHF 65 (159)
T ss_pred CeEeC-CCCcEEEEEEEeCCCCce--Eeccccch
Confidence 35676 677889999999999855 66667666
No 35
>PRK13198 ureB urease subunit beta; Reviewed
Probab=62.90 E-value=10 Score=31.00 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=27.7
Q ss_pred cCCceeEE-EEEEEEecCCcEEEEEEEEeCCCCceeeeeecccee
Q 021411 132 CWPYSFEY-RLRVMLAADGGLTLISRVRNINGKPFNFSFAYHTYL 175 (312)
Q Consensus 132 ~~P~~f~l-~~ty~L~~~~~L~i~~~v~N~~~~~~pf~~g~HpYF 175 (312)
.-|+.+.+ .-.+.|. .+.=++++.|+|+||+|+ +.|-|-.|
T Consensus 29 ~~pGei~~~~g~I~lN-~gr~~~~l~V~NtGDRPI--QVGSHyHF 70 (158)
T PRK13198 29 TPLGGLVLAETPITFN-ENKPVTKVKVRNTGDRPI--QVGSHFHF 70 (158)
T ss_pred CCCceEEeCCCCeEeC-CCCcEEEEEEEeCCCCce--Eeccccch
Confidence 34554332 2235777 677889999999999855 66666666
No 36
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=60.96 E-value=65 Score=29.15 Aligned_cols=30 Identities=27% Similarity=0.313 Sum_probs=23.6
Q ss_pred EEeCCCCCEEEEEccCcEEEEEEeCCCeeEEE
Q 021411 27 VLRSPHGPSAKVSLYGGQITSWRNEKGEELLF 58 (312)
Q Consensus 27 ~L~n~~g~~a~v~~~Ga~l~s~~~~~g~evL~ 58 (312)
+|+.++ .++++...-|.|.||+. +|+++|-
T Consensus 1 tV~g~~-f~~~Fdk~~G~l~s~~~-~g~~ll~ 30 (276)
T PF02929_consen 1 TVSGKD-FSYVFDKKTGTLTSYKY-NGKELLK 30 (276)
T ss_dssp -EEETT-EEEEEETTTTCEEEEEE-TTEEEEC
T ss_pred CCccCC-EEEEEECCCCeEEEEEE-CCEEeec
Confidence 466676 89999966679999998 6888884
No 37
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=56.67 E-value=14 Score=34.66 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=23.4
Q ss_pred EEEEEEecCCcEEEEEEEEeCCCCceeee
Q 021411 140 RLRVMLAADGGLTLISRVRNINGKPFNFS 168 (312)
Q Consensus 140 ~~ty~L~~~~~L~i~~~v~N~~~~~~pf~ 168 (312)
..+|++- +.+|+++++|+|.|++|..++
T Consensus 255 ~A~Y~vp-gR~l~~~l~VtN~g~~pv~Lg 282 (381)
T PF04744_consen 255 DATYRVP-GRTLTMTLTVTNNGDSPVRLG 282 (381)
T ss_dssp EEEEESS-SSEEEEEEEEEEESSS-BEEE
T ss_pred ccEEecC-CcEEEEEEEEEcCCCCceEee
Confidence 5678988 999999999999999987544
No 38
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=55.02 E-value=15 Score=34.46 Aligned_cols=28 Identities=7% Similarity=0.131 Sum_probs=23.6
Q ss_pred EEEEEEecCCcEEEEEEEEeCCCCceeee
Q 021411 140 RLRVMLAADGGLTLISRVRNINGKPFNFS 168 (312)
Q Consensus 140 ~~ty~L~~~~~L~i~~~v~N~~~~~~pf~ 168 (312)
.-+|.+- +.+|+++++|+|.++++..++
T Consensus 274 ~a~Y~VP-GR~l~~~~~VTN~g~~~vrlg 301 (399)
T TIGR03079 274 KANYDVP-GRALRVTMEITNNGDQVISIG 301 (399)
T ss_pred ccEEecC-CcEEEEEEEEEcCCCCceEEE
Confidence 3478887 899999999999999987543
No 39
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=54.14 E-value=33 Score=25.12 Aligned_cols=38 Identities=24% Similarity=0.231 Sum_probs=27.6
Q ss_pred CceeEEEEEEEEecCCcEEEEEEEEeCCCCceeeeeeccce
Q 021411 134 PYSFEYRLRVMLAADGGLTLISRVRNINGKPFNFSFAYHTY 174 (312)
Q Consensus 134 P~~f~l~~ty~L~~~~~L~i~~~v~N~~~~~~pf~~g~HpY 174 (312)
|+.++++..|.-. .-.+.+++.|.|.++..|.+--+.|
T Consensus 6 ~~~~~v~~~~~~~---~g~l~l~l~N~g~~~~~~~v~~~~y 43 (89)
T PF05506_consen 6 PYAPEVTARYDPA---TGNLRLTLSNPGSAAVTFTVYDNAY 43 (89)
T ss_pred CCCCEEEEEEECC---CCEEEEEEEeCCCCcEEEEEEeCCc
Confidence 5556666665544 3367777789999999998888766
No 40
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=50.24 E-value=19 Score=30.96 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=28.5
Q ss_pred cCCceeEE-EEEEEEecCCcEEEEEEEEeCCCCceeeeeeccceee
Q 021411 132 CWPYSFEY-RLRVMLAADGGLTLISRVRNINGKPFNFSFAYHTYLL 176 (312)
Q Consensus 132 ~~P~~f~l-~~ty~L~~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~ 176 (312)
.+|+.+.+ .=.+.|. .+.=+++++|+|+||+|. +.|-|-.|-
T Consensus 110 l~PGei~~~~~~I~lN-~gr~~~~l~V~NtGDRPI--QVGSHyHF~ 152 (208)
T PRK13192 110 LYPGEILPGDGEIELN-AGRPAVTLDVTNTGDRPI--QVGSHFHFF 152 (208)
T ss_pred cCCCEEEcCCCCeeeC-CCCCEEEEEEEeCCCCce--eeccccchh
Confidence 35665433 1235676 677789999999999854 666776663
No 41
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=48.66 E-value=25 Score=25.61 Aligned_cols=20 Identities=20% Similarity=0.394 Sum_probs=13.9
Q ss_pred cEEEEEEEEeCCCCceeeee
Q 021411 150 GLTLISRVRNINGKPFNFSF 169 (312)
Q Consensus 150 ~L~i~~~v~N~~~~~~pf~~ 169 (312)
++.+.++|+|.++++..+.+
T Consensus 1 ~v~~~l~v~N~s~~~v~l~f 20 (82)
T PF12690_consen 1 QVEFTLTVTNNSDEPVTLQF 20 (82)
T ss_dssp -EEEEEEEEE-SSS-EEEEE
T ss_pred CEEEEEEEEeCCCCeEEEEe
Confidence 47889999999998876653
No 42
>PRK13986 urease subunit alpha; Provisional
Probab=46.19 E-value=23 Score=30.88 Aligned_cols=30 Identities=17% Similarity=0.410 Sum_probs=23.4
Q ss_pred EEEecCCcEEEEEEEEeCCCCceeeeeecccee
Q 021411 143 VMLAADGGLTLISRVRNINGKPFNFSFAYHTYL 175 (312)
Q Consensus 143 y~L~~~~~L~i~~~v~N~~~~~~pf~~g~HpYF 175 (312)
+.|. .+.=+++++|+|+||+|. +.|-|-.|
T Consensus 118 I~lN-~gr~~~~l~V~NtGDRPI--QVGSHyHF 147 (225)
T PRK13986 118 ITIN-AGKKAVSVKVKNVGDRPV--QVGSHFHF 147 (225)
T ss_pred eecC-CCCcEEEEEEEeCCCCce--eeccccch
Confidence 5676 677889999999999854 66677666
No 43
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=41.40 E-value=2.4e+02 Score=24.47 Aligned_cols=31 Identities=35% Similarity=0.411 Sum_probs=26.4
Q ss_pred EEEEeCCCCCEEEEEccCcEEEEEEeCCCe-eEE
Q 021411 25 QVVLRSPHGPSAKVSLYGGQITSWRNEKGE-ELL 57 (312)
Q Consensus 25 ~~~L~n~~g~~a~v~~~Ga~l~s~~~~~g~-evL 57 (312)
.++|.|+- .+++|+.-||.|++++. +|. ++|
T Consensus 17 ~VvldNGi-VqVtls~p~G~VtgIkY-nGi~NLl 48 (203)
T PF06045_consen 17 QVVLDNGI-VQVTLSKPGGIVTGIKY-NGIDNLL 48 (203)
T ss_pred EEEEECCE-EEEEEcCCCceEEEEEE-CCEehhh
Confidence 38899998 99999998999999998 576 454
No 44
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=36.53 E-value=91 Score=22.82 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=22.9
Q ss_pred CceeEEEEEEEEecCCcEEEEEEEEeCCCCceeeee
Q 021411 134 PYSFEYRLRVMLAADGGLTLISRVRNINGKPFNFSF 169 (312)
Q Consensus 134 P~~f~l~~ty~L~~~~~L~i~~~v~N~~~~~~pf~~ 169 (312)
|+-.++.+=+.|..++.+.+.++|.|..++++.+..
T Consensus 55 p~~i~~~lP~~l~~GD~~~i~v~v~N~~~~~~~v~V 90 (92)
T PF00207_consen 55 PFFIQLNLPRSLRRGDQIQIPVTVFNYTDKDQEVTV 90 (92)
T ss_dssp SEEEEEE--SEEETTSEEEEEEEEEE-SSS-EEEEE
T ss_pred eEEEEcCCCcEEecCCEEEEEEEEEeCCCCCEEEEE
Confidence 455566666677667888888888888877776554
No 45
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=33.48 E-value=6.7e+02 Score=27.40 Aligned_cols=119 Identities=16% Similarity=0.191 Sum_probs=60.2
Q ss_pred eEEEEeCCCCCEEEEEccCcEEEEEEeCCCeeEEEeCC-CCccCCCCcccccceEEcCcCCCC-CCCCCcee-eecCCcE
Q 021411 24 DQVVLRSPHGPSAKVSLYGGQITSWRNEKGEELLFTSS-KAIFKPPKAIRGGISTCFPQFGNC-GSPELHGF-ARNKLWI 100 (312)
Q Consensus 24 ~~~~L~n~~g~~a~v~~~Ga~l~s~~~~~g~evL~~~~-~~~~~~~~~irgG~p~lfP~~gr~-~~~~~HGf-ar~~~W~ 100 (312)
..++|+.++ .++++...=|.|.||+. +|+++|.... ...|.....- -. +..... ....++-. .+...|+
T Consensus 724 ~~~~i~~~~-~~~~fdk~tG~l~s~~~-~g~~ll~~~~~~nfwRAptDN--D~----~~~~~~W~~ag~~~l~~~~~~~~ 795 (1021)
T PRK10340 724 LSCTVRGYN-FAITFSKVSGKLTSWQV-NGESLLTREPKINFFKPMIDN--HK----QEYEGLWQPNHLQIMQEHLRDFA 795 (1021)
T ss_pred CEEEEEeCC-EEEEEECCcceEEEEEe-CCeeeecCCCccceEeCCccC--Cc----chhhHHHHHcCCccceeEEEEEE
Confidence 346677666 88888866679999998 6889885543 3334221000 00 000000 00011110 1112344
Q ss_pred EecCCCCCCCCCCCCceEEEEEecCCCCCCCcCCceeEEEEEEEEecCCcEEEEEEEEeCCC
Q 021411 101 IDDNPPPMPPNDSDGKTCVDLLLKPSEEDPKCWPYSFEYRLRVMLAADGGLTLISRVRNING 162 (312)
Q Consensus 101 v~~~~~~~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ty~L~~~~~L~i~~~v~N~~~ 162 (312)
+...+ +...|+..+...... . -+.++++++|++..+..+.+++++.-.++
T Consensus 796 ~~~~~---------~~v~v~~~~~~~~~~-~--~~~~~~~~~y~i~~~G~i~v~~~~~~~~~ 845 (1021)
T PRK10340 796 VEQSD---------GEVLIISRTVIAPPV-F--DFGMRCTYIYRIAADGQVNVALSGERYGD 845 (1021)
T ss_pred EEeCC---------CeEEEEEEEEecCCc-c--cceeEEEEEEEEcCCCEEEEEEEEEECCC
Confidence 43322 244444444322211 1 12468899999975667888888764443
No 46
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=33.47 E-value=1.3e+02 Score=23.65 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=27.9
Q ss_pred EEecCCcEEEEEEEEeCCCCceeeeeeccceee
Q 021411 144 MLAADGGLTLISRVRNINGKPFNFSFAYHTYLL 176 (312)
Q Consensus 144 ~L~~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~ 176 (312)
.+.++..-++++.|+|.++++.-|....++.+.
T Consensus 22 ~~~P~q~~~l~v~i~N~s~~~~tv~v~~~~A~T 54 (121)
T PF06030_consen 22 KVKPGQKQTLEVRITNNSDKEITVKVSANTATT 54 (121)
T ss_pred EeCCCCEEEEEEEEEeCCCCCEEEEEEEeeeEe
Confidence 344567899999999999999999999888875
No 47
>PF00942 CBM_3: Cellulose binding domain; InterPro: IPR001956 This domain is involved in cellulose binding [] and is found associated with a wide range of bacterial glycosyl hydrolases. The structure for this domain is known []; it forms a beta sandwich.; GO: 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2L8A_A 4TF4_B 3TF4_B 1JS4_A 1TF4_B 1NBC_A 2YLK_A 3ZQX_A 2XFG_B 2XBT_A ....
Probab=29.88 E-value=1.3e+02 Score=21.87 Aligned_cols=33 Identities=9% Similarity=0.294 Sum_probs=25.6
Q ss_pred CCcEEEEEEEEeCCCCceeee-eeccceeecCCc
Q 021411 148 DGGLTLISRVRNINGKPFNFS-FAYHTYLLVSDI 180 (312)
Q Consensus 148 ~~~L~i~~~v~N~~~~~~pf~-~g~HpYF~~~~~ 180 (312)
.+.+.+.+.|+|++..+.... +-++=||...+.
T Consensus 12 ~n~i~~~~~i~Ntg~~~i~Ls~l~iRYyft~d~~ 45 (86)
T PF00942_consen 12 TNSIEPKFKIKNTGWPAIDLSDLKIRYYFTIDEV 45 (86)
T ss_dssp ESEEEEEEEEEETSSS-EEGGGEEEEEEEE-SSC
T ss_pred CCEEEEEEEEEECCCCCEEcCCEEEEEEEecCCC
Confidence 478999999999888887765 888888888753
No 48
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=27.50 E-value=84 Score=22.18 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=14.6
Q ss_pred EEecceeeCCCeEeCCCCEEEEEEEEEEE
Q 021411 273 LCVDAAAVEKPITLKPGEEWTGRLQLLVV 301 (312)
Q Consensus 273 vCvEP~~~~~~~~L~pGe~~~~~~~i~~~ 301 (312)
+-..|... ..|+||++.+..+.|++-
T Consensus 36 ~~~~~~~~---~~l~pG~s~~~~~~V~vp 61 (78)
T PF10633_consen 36 VSASPASV---PSLPPGESVTVTFTVTVP 61 (78)
T ss_dssp ---EEEEE-----B-TTSEEEEEEEEEE-
T ss_pred ccCCcccc---ccCCCCCEEEEEEEEECC
Confidence 44444443 289999999988888764
No 49
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=26.26 E-value=23 Score=25.64 Aligned_cols=22 Identities=23% Similarity=0.605 Sum_probs=18.0
Q ss_pred ceEEecceeeCCCeEeCCCCEEEE
Q 021411 271 QMLCVDAAAVEKPITLKPGEEWTG 294 (312)
Q Consensus 271 ~~vCvEP~~~~~~~~L~pGe~~~~ 294 (312)
.|-|+++.+ ..+.|.|||+|++
T Consensus 56 yF~tLp~nT--~lmvL~~gq~W~g 77 (77)
T cd06535 56 YFPTLPDNT--ELVLLTPGQSWQG 77 (77)
T ss_pred HHhcCCCCc--EEEEEcCCCccCC
Confidence 677888876 4899999999963
No 50
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=23.80 E-value=2.7e+02 Score=21.24 Aligned_cols=33 Identities=24% Similarity=0.405 Sum_probs=16.9
Q ss_pred eEEEEEEEEecCCcEEE-EEEEEeCCCCceeeee
Q 021411 137 FEYRLRVMLAADGGLTL-ISRVRNINGKPFNFSF 169 (312)
Q Consensus 137 f~l~~ty~L~~~~~L~i-~~~v~N~~~~~~pf~~ 169 (312)
++.++++.+..++.+++ .++++|+++++.-+.+
T Consensus 50 i~~~~~v~V~~~~~vEi~~l~l~N~~~~~r~L~v 83 (110)
T PF06165_consen 50 IETELTVFVPPDDPVEIRRLRLTNTSNRPRRLSV 83 (110)
T ss_dssp EEEEEEEE--TTSSEEEEEEEEEE-SSS-EEEEE
T ss_pred EEEEEEEEEcCCCCEEEEEEEEEECcCCcEEEEE
Confidence 44555555543344444 5889999888765443
No 51
>PF14310 Fn3-like: Fibronectin type III-like domain; PDB: 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A.
Probab=23.20 E-value=1e+02 Score=21.32 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=14.3
Q ss_pred CCeEeCCCCEEEEEEEEEEE
Q 021411 282 KPITLKPGEEWTGRLQLLVV 301 (312)
Q Consensus 282 ~~~~L~pGe~~~~~~~i~~~ 301 (312)
..+.|+|||+.+.++.|..+
T Consensus 25 ~rv~l~pGes~~v~~~l~~~ 44 (71)
T PF14310_consen 25 ERVSLAPGESKTVSFTLPPE 44 (71)
T ss_dssp EEEEE-TT-EEEEEEEEEHH
T ss_pred EEEEECCCCEEEEEEEECHH
Confidence 35679999999999988653
No 52
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=23.01 E-value=3.3e+02 Score=22.25 Aligned_cols=19 Identities=26% Similarity=0.211 Sum_probs=15.7
Q ss_pred CeEeCCCCEEEEEEEEEEE
Q 021411 283 PITLKPGEEWTGRLQLLVV 301 (312)
Q Consensus 283 ~~~L~pGe~~~~~~~i~~~ 301 (312)
.-.|+||++.+..+.|-|-
T Consensus 123 I~~L~pg~s~t~~lgIDF~ 141 (145)
T PF14796_consen 123 IESLEPGASVTVSLGIDFN 141 (145)
T ss_pred ccccCCCCeEEEEEEEecc
Confidence 4579999999998888764
No 53
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=22.98 E-value=1.7e+02 Score=24.12 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=26.0
Q ss_pred eEEEEEecCCCCCCCcCCceeEEEE-EEEEecCCcEEEEEEEEeCCCCceeee
Q 021411 117 TCVDLLLKPSEEDPKCWPYSFEYRL-RVMLAADGGLTLISRVRNINGKPFNFS 168 (312)
Q Consensus 117 ~~v~l~l~~~~~~~~~~P~~f~l~~-ty~L~~~~~L~i~~~v~N~~~~~~pf~ 168 (312)
-.|++++..+ ...+-||.|+-.. ..++..|+.-.+.|.++|++++++.-.
T Consensus 36 R~i~V~F~a~--~~~~lpW~F~P~q~~v~V~pGe~~~~~y~a~N~s~~~i~g~ 86 (152)
T PF04442_consen 36 RTITVRFDAN--VNPGLPWEFKPEQRSVKVHPGETALVFYEATNPSDKPITGQ 86 (152)
T ss_dssp -EEEEEEEEE--E-TTS-EEEE-S-SEEEEETT--EEEEEEEEE-SSS-EE--
T ss_pred cEEEEEEEee--cCCCCceEEEeeeeeEEeCCCCEEEEEEEEECCCCCcEEEE
Confidence 3455555433 2355788887643 344554677888999999999987543
No 54
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=22.06 E-value=34 Score=23.45 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=11.4
Q ss_pred CcccccceEEcCcC
Q 021411 69 KAIRGGISTCFPQF 82 (312)
Q Consensus 69 ~~irgG~p~lfP~~ 82 (312)
-||+.|||++.|--
T Consensus 36 YpI~dGIPvlL~~e 49 (60)
T COG2835 36 YPIRDGIPVLLPDE 49 (60)
T ss_pred eecccCccccCchh
Confidence 48899999998843
No 55
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=21.23 E-value=1.1e+03 Score=25.82 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=26.1
Q ss_pred EEEEeCCCCCEEEEEccCcEEEEEEeCCCeeEEEeC
Q 021411 25 QVVLRSPHGPSAKVSLYGGQITSWRNEKGEELLFTS 60 (312)
Q Consensus 25 ~~~L~n~~g~~a~v~~~Ga~l~s~~~~~g~evL~~~ 60 (312)
.++|+.++ .++++...=|.|+||+. +|+++|...
T Consensus 750 ~~~i~~~~-~~~~f~~~~G~l~s~~~-~g~~~l~~~ 783 (1027)
T PRK09525 750 DFCIELGN-QRWQFNRQSGLLSQWWV-GGKEQLLTP 783 (1027)
T ss_pred eEEEEECC-EEEEEECCCceEEEEEE-CCEEeeccC
Confidence 45677766 88888866679999988 688888654
No 56
>PF14100 PmoA: Methane oxygenase PmoA
Probab=20.95 E-value=95 Score=28.06 Aligned_cols=37 Identities=27% Similarity=0.470 Sum_probs=29.0
Q ss_pred ceEEecceee-CCCeEeCCCCEEEEEEEEEEEecCCCc
Q 021411 271 QMLCVDAAAV-EKPITLKPGEEWTGRLQLLVVPSSFCS 307 (312)
Q Consensus 271 ~~vCvEP~~~-~~~~~L~pGe~~~~~~~i~~~~~~~~~ 307 (312)
.++|+-|.-. .....|+|||+.+.++++-+.......
T Consensus 224 g~~~~~p~~~~~~~~~l~~G~~l~~rYr~~v~dG~~~~ 261 (271)
T PF14100_consen 224 GLFGANPAPAFDGPLTLPPGETLTLRYRVVVHDGALDA 261 (271)
T ss_pred CcceecccccccCceecCCCCeEEEEEEEEEeCCCCCH
Confidence 5777777654 578999999999999999887655443
Done!