BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021412
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HTA|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTA|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Orthorhombic Form
pdb|2HTB|A Chain A, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|B Chain B, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|C Chain C, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
pdb|2HTB|D Chain D, Crystal Structure Of A Putative Mutarotase (Yead) From
Salmonella Typhimurium In Monoclinic Form
Length = 309
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/256 (32%), Positives = 120/256 (46%), Gaps = 28/256 (10%)
Query: 62 EAELYLFGGCVTSWKASNDKDLLFVRPDAVFNWKKPISGGVPHCFPQFGPGPMQ---QHG 118
+A L G + SWK ++++L++ + F + GGVP C+P FGP Q HG
Sbjct: 52 KASFALQGAHLLSWKPVGEEEVLWLSNNTPFKTGVALRGGVPICWPWFGPAAQQGLPSHG 111
Query: 119 FARNMDWSILDSENVEGNPVITLELKDGPYSRAMW--DFSFQALFKVILNTKSISTELTI 176
FARN+ W++ + ++T EL+ +R W DF+ A FKV K+ EL
Sbjct: 112 FARNLPWALKAHNEDDNGVMLTFELQSSEATRKYWPHDFTLLARFKV---GKTCEIELEA 168
Query: 177 TNTDNKPFSFSSALHTYFR-ASVTGASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTFPG 235
+ F+ +SALH+YF + V GL G + ++K D K EG TFP
Sbjct: 169 ----HGEFATTSALHSYFNVGDIANVKVSGL-GDRFIDKVNDAK---EGVLTDGIQTFPD 220
Query: 236 FVDCIYL--DAPSVVHLDNGLGDTITIRNTNWSDAVLWNPHMQMEAC--------YKDFV 285
D +YL +A SV+H D L TI + + + + V WNP + YK FV
Sbjct: 221 RTDRVYLNPEACSVIH-DATLNRTIDVVHHHHLNVVGWNPGPALSVSMGDMPDDGYKTFV 279
Query: 286 CVENAKIGKVQLEPEQ 301
CVE Q E+
Sbjct: 280 CVETVYATAPQQATEE 295
>pdb|2CIR|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Glucose-6-Phosphate
pdb|2CIS|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase. Complex With
Tagatose-6-Phosphate
Length = 297
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 121/288 (42%), Gaps = 40/288 (13%)
Query: 52 KVVLTSAGGSEAELYL--FGGCVTSWKASNDKDLLFVRPDAVFNWKKPISGGVPHCFPQF 109
+VVLT +++ +G V SWK +++ L ++ A + KP+ GG+P FP F
Sbjct: 9 EVVLTHPADETTSVHILKYGATVYSWKLKSEEQL-WLSTAAKLDGSKPVRGGIPLVFPVF 67
Query: 110 GP-------GPMQQHGFARNMDWSILDSENVEGNPVITLELK---DGPYSRAMWDFSFQA 159
G + QHG ARN W L + E P + LK P +W +
Sbjct: 68 GKNSTDEHLSKLPQHGLARNSTWEFL-GQTKENPPTVQFGLKPEIANPELTKLWPMDYLL 126
Query: 160 LFKVILNTKSISTELTITNT-DNKPFSFSSALHTYFRAS-VTGASVKGLKGCK----TLN 213
+ V L + + T + + NT +K F+ HTYFR + G V L G K L
Sbjct: 127 ILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLLK 186
Query: 214 KDPDPKNPMEGKEERDRVTFPGFVDCIY--LDAPSVVHLDNGLGDTITIRNTNWSDAVLW 271
+ K+P+ VTF D IY + A + + + T++ N D V+W
Sbjct: 187 ESYVDKHPV--------VTFNQETDVIYQNVSAERAIQIVDKGVQIHTLKRYNLPDTVVW 238
Query: 272 NPHMQMEACYKDF---------VCVENAKIGK-VQLEPEQSWTAKQHL 309
NP ++ DF +C+E + + L P + W A Q L
Sbjct: 239 NPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQLL 286
>pdb|2CIQ|A Chain A, Structure-Based Functional Annotation: Yeast Ymr099c Codes
For A D-Hexose-6-Phosphate Mutarotase
Length = 297
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/288 (27%), Positives = 121/288 (42%), Gaps = 40/288 (13%)
Query: 52 KVVLTSAGGSEAELYL--FGGCVTSWKASNDKDLLFVRPDAVFNWKKPISGGVPHCFPQF 109
+VVLT +++ +G V SWK +++ L ++ A + KP+ GG+P FP F
Sbjct: 9 EVVLTHPADETTSVHILKYGATVYSWKLKSEEQL-WLSTAAKLDGSKPVRGGIPLVFPVF 67
Query: 110 GP-------GPMQQHGFARNMDWSILDSENVEGNPVITLELK---DGPYSRAMWDFSFQA 159
G + QHG ARN W L + E P + LK P +W +
Sbjct: 68 GKNSTDEHLSKLPQHGLARNSTWEFL-GQTKENPPTVQFGLKPEIANPELTKLWPMDYLL 126
Query: 160 LFKVILNTKSISTELTITNT-DNKPFSFSSALHTYFRAS-VTGASVKGLKGCK----TLN 213
+ V L + + T + + NT +K F+ HTYFR + G V L G K L
Sbjct: 127 ILTVELGSDYLKTAIEVENTSSSKELKFNWLFHTYFRIEDIEGTMVSNLAGMKLYDQLLK 186
Query: 214 KDPDPKNPMEGKEERDRVTFPGFVDCIY--LDAPSVVHLDNGLGDTITIRNTNWSDAVLW 271
+ K+P+ VTF D IY + A + + + T++ N D V+W
Sbjct: 187 ESYVDKHPV--------VTFNQETDVIYQNVSAERAIQIVDKGVQIHTLKRYNLPDTVVW 238
Query: 272 NPHMQMEACYKDF---------VCVENAKIGK-VQLEPEQSWTAKQHL 309
NP ++ DF +C+E + + L P + W A Q L
Sbjct: 239 NPWIEKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQLL 286
>pdb|1JOV|A Chain A, Crystal Structure Analysis Of Hi1317
Length = 270
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 116/269 (43%), Gaps = 57/269 (21%)
Query: 50 LPKVVLTSAGGSEAELYLFGGCVTSWKASNDK-DLLFVRPDAVFNWKKPISGGVPHCFPQ 108
+P + L A G+ A++ L G + SWK N K D+L++ F I GGVP C+P
Sbjct: 21 IPVLHLKHAVGT-AKISLQGAQLISWKPQNAKQDVLWLSEVEPFKNGNAIRGGVPICYPW 79
Query: 109 FGPGPMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTK 168
FG HG AR W + Y ++ + F++ +
Sbjct: 80 FGGVKQPAHGTARIRLWQL------------------SHYYISVHKVRLE--FELFSDLN 119
Query: 169 SISTELTITNTDNKPFSFS--------SALHTYFR-ASVTGASVKGL-KGC-KTLNKD-- 215
I ++++ TD +F+ +ALHTYF + V+GL + C +LN+
Sbjct: 120 IIEAKVSMVFTDKCHLTFTHYGEESAQAALHTYFNIGDINQVEVQGLPETCFNSLNQQQE 179
Query: 216 --PDPKNPMEGKEERDRVTFPGFVDCIYLDAPSVVH--LDNGLGDTITIRNTNWSDAVLW 271
P P++ E VDCIY A ++ + LD TI + + N S VLW
Sbjct: 180 NVPSPRHISEN------------VDCIY-SAENMQNQILDKSFNRTIALHHHNASQFVLW 226
Query: 272 NP-HMQM----EACYKDFVCVENAKIGKV 295
NP H + E Y+ +C+E A+I +
Sbjct: 227 NPWHKKTSGMSETGYQKMLCLETARIHHL 255
>pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
pdb|3K25|B Chain B, Crystal Structure Of Slr1438 Protein From Synechocystis
Sp. Pcc 6803, Northeast Structural Genomics Consortium
Target Sgr112
Length = 289
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 20/141 (14%)
Query: 69 GGCVTSWKASNDKDLLFVRPDAVFNWKKP---ISGGVPHCFPQFGPGP------------ 113
GG VT W L F R ++ P + GG+P FP G P
Sbjct: 32 GGLVTEWTVQGQPILYFDRE----RFQDPSLSVRGGIPILFPICGNLPQDQFNHAGKSYR 87
Query: 114 MQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTE 173
++QHGFAR++ W ++ + + N + L L + + F+F+ +F L S+ E
Sbjct: 88 LKQHGFARDLPWEVI-GQQTQDNARLDLRLSHNDATLEAFPFAFELVFSYQLQGHSLRIE 146
Query: 174 LTITNTDNKPFSFSSALHTYF 194
I N ++ FS H YF
Sbjct: 147 QRIANLGDQRXPFSLGFHPYF 167
>pdb|3Q1N|A Chain A, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Lsei_2598) From Lactobacillus Casei Atcc 334 At 1.61 A
Resolution
Length = 294
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 113 PMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSIST 172
P QHGFAR+ D+ + D + + +T + + F + L +S
Sbjct: 69 PXSQHGFARDYDFDVSD----KSDSAVTFTQHQNAETLKKFPFEYTLAVTYXLTDGGLSV 124
Query: 173 ELTITNTDNKPFSFSSALHTYFRASV 198
T+TN D+K F+ H F +
Sbjct: 125 HYTVTNDDSKSXPFALGFHPAFNVGL 150
>pdb|1ZRZ|A Chain A, Crystal Structure Of The Catalytic Domain Of Atypical
Protein Kinase C-Iota
Length = 364
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 105 CFPQFGPGPMQQHGFARNMDWSILDSENV 133
C PQ G +Q H F RN+DW +++ + V
Sbjct: 275 CLPQTGFADIQGHPFFRNVDWDMMEQKQV 303
>pdb|4DC2|A Chain A, Structure Of Pkc In Complex With A Substrate Peptide From
Par-3
Length = 396
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 105 CFPQFGPGPMQQHGFARNMDWSILDSENV 133
C PQ G +Q H F RN+DW +++ + V
Sbjct: 307 CHPQTGFADIQGHPFFRNVDWDMMEQKQV 335
>pdb|3ZH8|A Chain A, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|B Chain B, A Novel Small Molecule Apkc Inhibitor
pdb|3ZH8|C Chain C, A Novel Small Molecule Apkc Inhibitor
Length = 349
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 105 CFPQFGPGPMQQHGFARNMDWSILDSENV 133
C PQ G +Q H F RN+DW +++ + V
Sbjct: 260 CHPQTGFADIQGHPFFRNVDWDMMEQKQV 288
>pdb|3A8W|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8W|B Chain B, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|A Chain A, Crystal Structure Of Pkciota Kinase Domain
pdb|3A8X|B Chain B, Crystal Structure Of Pkciota Kinase Domain
Length = 345
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 105 CFPQFGPGPMQQHGFARNMDWSILDSENV 133
C PQ G +Q H F RN+DW +++ + V
Sbjct: 264 CHPQTGFADIQGHPFFRNVDWDMMEQKQV 292
>pdb|3DCD|A Chain A, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33.
pdb|3DCD|B Chain B, X-Ray Structure Of The Galactose Mutarotase Related Enzyme
Q5fkd7 From Lactobacillus Acidophilus At The Resolution
1.9a. Northeast Structural Genomics Consortium Target
Lar33
Length = 307
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 114 MQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTE 173
+ QHGFARN D+ + EN IT LKD +R ++ F F+ L +
Sbjct: 70 LGQHGFARNADFEV---EN-HTKESITFLLKDNEETRKVYPFKFEFRVNYNLXNNLLEEN 125
Query: 174 LTITNTDNKPFSFSSALHTYF 194
++ N ++ F H F
Sbjct: 126 FSVVNKSDETXIFGVGGHPGF 146
>pdb|4A4A|A Chain A, Cpgh89 (E483q, E601q), From Clostridium Perfringens, In
Complex With Its Substrate Glcnac-Alpha-1,4-Galactose
Length = 914
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 40 GVRVTEGEGSLPKVVLTSAGGSE---AELYLFGGCVTSWKASNDKDLLFVRPDAVFNWKK 96
GV +TEG V +T+ G +E A+L + G T W++SND + V ++ K
Sbjct: 24 GVEITEG------VTVTAKGNTEGNTADLAIDGDLSTYWESSNDYKWIEVDLGGIYELSK 77
>pdb|2VC9|A Chain A, Family 89 Glycoside Hydrolase From Clostridium
Perfringens In Complex With
2-Acetamido-1,2-Dideoxynojirmycin
pdb|2VCA|A Chain A, Family 89 Glycoside Hydrolase From Clostridium
Perfringens In Complex With Beta-N-Acetyl-D-Glucosamine
pdb|2VCB|A Chain A, Family 89 Glycoside Hydrolase From Clostridium
Perfringens In Complex With Pugnac
pdb|2VCC|A Chain A, Family 89 Glycoside Hydrolase From Clostridium
Perfringens
Length = 891
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Query: 40 GVRVTEGEGSLPKVVLTSAGGSE---AELYLFGGCVTSWKASNDKDLLFVRPDAVFNWKK 96
GV +TEG V +T+ G +E A+L + G T W++SND + V ++ K
Sbjct: 1 GVEITEG------VTVTAKGNTEGNTADLAIDGDLSTYWESSNDYKWIEVDLGGIYELSK 54
>pdb|2KLT|A Chain A, Second Ca2+ Binding Domain Of Ncx1.3
Length = 163
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 204 KGLKGCKTLNKDPDPKNPMEGKEERDR 230
+G+KG T+ ++ D K P+ KEE +R
Sbjct: 106 RGMKGGFTITEEYDDKQPLTSKEEEER 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,253,929
Number of Sequences: 62578
Number of extensions: 445966
Number of successful extensions: 906
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 885
Number of HSP's gapped (non-prelim): 17
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)