Query 021412
Match_columns 312
No_of_seqs 128 out of 1422
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:45:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021412.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021412hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1594 Uncharacterized enzyme 100.0 2.4E-63 5.1E-68 434.4 27.4 280 30-312 3-297 (305)
2 cd09020 D-hex-6-P-epi_like D-h 100.0 7.3E-55 1.6E-59 399.2 28.6 253 53-310 2-269 (269)
3 cd09025 Aldose_epim_Slr1438 Al 100.0 1.2E-45 2.6E-50 338.7 25.6 244 50-309 1-270 (271)
4 COG0676 Uncharacterized enzyme 100.0 6.5E-44 1.4E-48 317.5 21.1 248 48-311 22-284 (287)
5 cd09024 Aldose_epim_lacX Aldos 100.0 1.5E-40 3.2E-45 307.6 28.1 241 53-311 1-288 (288)
6 cd09021 Aldose_epim_Ec_YphB al 100.0 1E-38 2.2E-43 293.0 24.8 229 63-310 2-273 (273)
7 PRK15172 putative aldose-1-epi 100.0 7.6E-36 1.7E-40 277.5 30.3 244 48-311 8-297 (300)
8 cd01081 Aldose_epim aldose 1-e 100.0 6.6E-36 1.4E-40 274.1 26.1 237 62-307 2-283 (284)
9 PF01263 Aldose_epim: Aldose 1 100.0 9.4E-36 2E-40 275.9 21.9 255 51-310 1-300 (300)
10 cd09022 Aldose_epim_Ec_YihR Al 100.0 1.6E-34 3.6E-39 266.6 27.6 234 61-309 1-284 (284)
11 COG2017 GalM Galactose mutarot 100.0 1.6E-32 3.5E-37 255.8 27.4 254 46-311 8-305 (308)
12 cd09019 galactose_mutarotase_l 100.0 3.2E-32 7E-37 256.0 26.8 247 53-311 2-326 (326)
13 PLN00194 aldose 1-epimerase; P 100.0 1.2E-29 2.6E-34 239.3 28.9 256 48-311 7-335 (337)
14 TIGR02636 galM_Leloir galactos 100.0 2.8E-29 6E-34 236.8 27.4 252 49-311 3-334 (335)
15 PRK11055 galM galactose-1-epim 100.0 4.9E-28 1.1E-32 228.4 27.5 253 48-311 7-339 (342)
16 PTZ00485 aldolase 1-epimerase; 99.9 9.1E-25 2E-29 207.4 29.3 263 40-311 4-368 (376)
17 cd09023 Aldose_epim_Ec_c4013 A 99.9 1E-21 2.2E-26 181.4 17.9 233 63-307 2-283 (284)
18 KOG1604 Predicted mutarotase [ 99.9 1.3E-19 2.8E-24 165.1 23.1 257 44-311 14-349 (353)
19 PF14486 DUF4432: Domain of un 99.5 3.6E-13 7.7E-18 125.3 18.2 251 48-311 2-302 (302)
20 cd09269 deoxyribose_mutarotase 99.4 8.6E-12 1.9E-16 115.4 15.7 190 113-309 61-292 (293)
21 PF14315 DUF4380: Domain of un 98.0 0.00039 8.5E-09 64.0 15.8 124 51-187 5-143 (274)
22 TIGR03593 yidC_nterm membrane 95.7 0.31 6.8E-06 46.6 14.0 121 50-185 73-203 (366)
23 PF09095 DUF1926: Domain of un 94.7 0.81 1.7E-05 42.2 13.1 133 47-191 4-181 (278)
24 PF14849 YidC_periplas: YidC p 93.8 0.67 1.5E-05 42.1 10.4 117 52-187 1-132 (270)
25 PRK01318 membrane protein inse 92.4 3.9 8.5E-05 41.2 14.2 117 52-186 40-170 (521)
26 PF06045 Rhamnogal_lyase: Rham 78.2 47 0.001 29.2 14.3 123 38-179 6-134 (203)
27 COG0832 UreB Urea amidohydrola 77.7 3.3 7.2E-05 31.9 3.6 31 161-191 11-41 (106)
28 PRK13203 ureB urease subunit b 67.5 8 0.00017 30.0 3.6 29 163-191 13-41 (102)
29 PF00699 Urease_beta: Urease b 67.2 6.6 0.00014 30.3 3.1 31 163-195 12-42 (100)
30 TIGR00192 urease_beta urease, 67.2 8.3 0.00018 29.8 3.6 30 163-194 13-42 (101)
31 cd00407 Urease_beta Urease bet 67.2 8 0.00017 30.0 3.5 32 162-195 12-43 (101)
32 PRK13202 ureB urease subunit b 60.9 13 0.00029 28.9 3.7 40 163-204 13-53 (104)
33 PRK13201 ureB urease subunit b 59.5 13 0.00028 30.3 3.6 29 163-191 13-41 (136)
34 PRK13205 ureB urease subunit b 59.1 13 0.00028 31.0 3.6 30 163-194 13-42 (162)
35 PF05506 DUF756: Domain of unk 58.9 31 0.00067 25.7 5.5 39 154-194 6-44 (89)
36 PRK13204 ureB urease subunit b 57.9 14 0.0003 30.8 3.6 40 152-191 24-64 (159)
37 PRK13198 ureB urease subunit b 57.8 14 0.0003 30.8 3.6 40 152-191 29-69 (158)
38 PF02929 Bgal_small_N: Beta ga 57.4 76 0.0017 29.1 8.9 117 54-181 1-123 (276)
39 PRK05089 cytochrome C oxidase 50.2 81 0.0018 27.4 7.3 51 136-188 62-114 (188)
40 PRK13192 bifunctional urease s 45.3 25 0.00054 30.8 3.4 40 153-194 111-151 (208)
41 PRK13986 urease subunit alpha; 41.6 29 0.00064 30.7 3.3 31 162-194 117-147 (225)
42 TIGR03079 CH4_NH3mon_ox_B meth 40.4 36 0.00078 32.6 3.8 27 161-187 275-301 (399)
43 PF12690 BsuPI: Intracellular 40.1 42 0.00091 24.9 3.5 21 169-189 1-21 (82)
44 PF04744 Monooxygenase_B: Mono 37.4 40 0.00086 32.3 3.6 29 160-188 255-283 (381)
45 PRK10340 ebgA cryptic beta-D-g 34.5 5.2E+02 0.011 28.6 12.1 116 51-180 724-844 (1021)
46 PF04442 CtaG_Cox11: Cytochrom 33.8 84 0.0018 26.3 4.7 49 136-186 35-85 (152)
47 PTZ00128 cytochrome c oxidase 32.2 2.1E+02 0.0047 25.7 7.2 51 136-188 106-158 (232)
48 PF00207 A2M: Alpha-2-macroglo 31.3 1.3E+02 0.0027 22.4 5.0 35 154-188 55-90 (92)
49 PRK09525 lacZ beta-D-galactosi 30.6 7.4E+02 0.016 27.4 12.5 35 51-87 749-783 (1027)
50 PF13629 T2SS-T3SS_pil_N: Pilu 30.1 1.5E+02 0.0033 21.0 5.0 47 229-275 13-61 (72)
51 PF14742 GDE_N_bis: N-terminal 27.0 4E+02 0.0088 22.8 9.1 38 152-190 76-113 (194)
52 PF09299 Mu-transpos_C: Mu tra 23.6 1.1E+02 0.0024 21.0 3.2 26 254-287 34-61 (62)
53 PF11344 DUF3146: Protein of u 21.0 2E+02 0.0044 21.2 4.1 42 260-308 23-78 (80)
No 1
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-63 Score=434.37 Aligned_cols=280 Identities=40% Similarity=0.707 Sum_probs=258.2
Q ss_pred eeeeeccccceeEEEecCCCceEEEEEcCCccEEEEecCCeEEEEEEECCCeeeeeeCCCCccCCCCCcccCccEEccCC
Q 021412 30 AFATMNKETLGVRVTEGEGSLPKVVLTSAGGSEAELYLFGGCVTSWKASNDKDLLFVRPDAVFNWKKPISGGVPHCFPQF 109 (312)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~v~L~~~~g~~a~I~~~Gg~i~s~~~~~g~evL~~~~~~~~~~~~~irgG~p~lfP~~ 109 (312)
+.+.++.++..+...++.++.+.++|+++.|.+|+|+++||+|+||+..+|+|+||.+..+.|++.+|||||||+|||+|
T Consensus 3 ~~~~~~~~~~~~~~~k~~~g~~~ivL~~p~g~taev~L~Gg~V~SWK~~~geElLf~S~kA~f~ppKpIRGGIP~~FPQF 82 (305)
T KOG1594|consen 3 RSSAMASERMPVELAKGRNGLDKIVLTDPRGSTAEVYLYGGQVVSWKNENGEELLFVSTKAIFKPPKPIRGGIPICFPQF 82 (305)
T ss_pred cccccccccccceeecccCCCceEEEeCCCCCeEEEEEeccEEEEeecCCCceeEEechhhhcCCCCcccCCcceEeecc
Confidence 44566777888999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CC-CCCCCceeeecCCcEEEeeecC---CCCcEEEEEeecCccccccCCcceEEEEEEEEeCCcEEEEEEEEeCCCCcEE
Q 021412 110 GP-GPMQQHGFARNMDWSILDSENV---EGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFS 185 (312)
Q Consensus 110 gr-g~~~~HG~~r~~~W~v~~~~~~---~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~p 185 (312)
|. |.+++|||+|++.|+++..... .+.+.|+|.|.+++++++.|||+|++++++.|.++.|+....|+|++++|+.
T Consensus 83 G~~g~l~qHGFaRn~~W~v~~~p~~lp~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~g~Lt~~~rV~Ntd~KpFs 162 (305)
T KOG1594|consen 83 GNFGSLPQHGFARNRFWEVENNPPPLPSLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGDGELTLTSRVRNTDSKPFS 162 (305)
T ss_pred CCCCcccccccccceeeEeccCCCCCCcCCceeEEEEecCChhhhhhCCcceEEEEEEEEcCCceEEEEEeecCCCCceE
Confidence 97 9999999999999999976532 2347899999999999999999999999999999999999999999999999
Q ss_pred Eeeecccceeeccce-EEEecCCCCceecCCCCCCCCCCCCccCceeccCCCcceEEeCCCCeEEE-cCCCCCeEEEEEc
Q 021412 186 FSSALHTYFRASVTG-ASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTFPGFVDCIYLDAPSVVHL-DNGLGDTITIRNT 263 (312)
Q Consensus 186 f~~g~HpYF~~~~~~-~~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l-d~~~g~~l~v~~~ 263 (312)
|++++|+||+++|++ ++|+|+++++|+|++..++.. ++++++++|+.++|++|++.+.++.| |...+++|.|..+
T Consensus 163 F~~alHtYf~vsdisevrveGL~tldylD~~~~~~~~---tE~~davTF~~e~DrvYl~tp~e~aI~dh~~krti~l~k~ 239 (305)
T KOG1594|consen 163 FSFALHTYFRVSDISEVRVEGLETLDYLDNLKNRERF---TEQRDAVTFNSEVDRVYLNTPTELAIFDHEKKRTIVLKKE 239 (305)
T ss_pred EEeEeeeeEeecccceEEEeccccccccccccchhhc---cccCceEeeccceeeEEecCCceEEEEEeccccEEEEecc
Confidence 999999999999997 999999999999887765443 67889999999999999999988887 9999999999999
Q ss_pred CCCcEEEeCCCCCC--------CCCCCcEEEEccCcccc-eEECCCCEEEEEEEEEEC
Q 021412 264 NWSDAVLWNPHMQM--------EACYKDFVCVENAKIGK-VQLEPEQSWTAKQHLSIN 312 (312)
Q Consensus 264 ~~~~~vvwtp~~~~--------~~~~~~fvCiEP~~~~~-~~L~PGe~~~~~~~i~v~ 312 (312)
++|+.||||||.++ +++|+.|||||+++++. ++|+|||+|++.+.++++
T Consensus 240 g~pDaVVWNPW~kksk~maD~gde~Y~~mlCVe~a~v~~pI~L~PG~eW~g~q~Lsiv 297 (305)
T KOG1594|consen 240 GLPDAVVWNPWDKKSKTMADFGDEDYKHMLCVESAAVESPITLKPGEEWKGRQLLSIV 297 (305)
T ss_pred CCCceEEeChhHhhhhhhhhccccccceeEEecccccCCceeecCCccceeEEEEEEe
Confidence 99999999999876 56899999999999997 999999999999998874
No 2
>cd09020 D-hex-6-P-epi_like D-hexose-6-phosphate epimerase-like. D-Hexose-6-phosphate epimerase Ymr099c from Saccharomyces cerevisiae belongs to the large superfamily of aldose-1-epimerases. Its active site is very similar to the catalytic site of galactose mutarotase, the best studied member of the superfamily. It also contains the conserved glutamate and histidine residues that have been shown in galactose mutarotase to be critical for catalysis, the glutamate serving as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. In addition Ymr099c contains 2 conserved arginine residues which are involved in phosphate binding, and exhibits hexose-6-phosphate mutarotase activity on glucose-6-P, galactose-6-P and mannose-6-P.
Probab=100.00 E-value=7.3e-55 Score=399.23 Aligned_cols=253 Identities=41% Similarity=0.740 Sum_probs=223.8
Q ss_pred EEEEcCCccEEEEecCCeEEEEEEECCCeeeeeeCCCCccCCCCCcccCccEEccCCCC-C---CCCCceeeecCCcEEE
Q 021412 53 VVLTSAGGSEAELYLFGGCVTSWKASNDKDLLFVRPDAVFNWKKPISGGVPHCFPQFGP-G---PMQQHGFARNMDWSIL 128 (312)
Q Consensus 53 v~L~~~~g~~a~I~~~Gg~i~s~~~~~g~evL~~~~~~~~~~~~~irgG~p~lfP~~gr-g---~~~~HG~~r~~~W~v~ 128 (312)
++|+++. ++|+|.++||+|+||+.++|+|+||+++.+.|++.+++|||+|+||||+|+ . ++++|||+|+.+|+|+
T Consensus 2 i~i~~~~-~~a~i~~~Ga~l~s~~~~~~~~~L~~s~~~~~~~~~~irgGiPvlfP~~g~~~~~~~~~~HGfaR~~~W~l~ 80 (269)
T cd09020 2 IVLDHPG-ASAEIALQGAQVLSWKPKGGQDLLWLSPQAPFDGGKAIRGGIPVCWPWFGPHGPNADLPAHGFARTRLWELL 80 (269)
T ss_pred EEEeCCC-ceEEEECCCcEEEEEeCCCCceeEEECCccccCCCCcccCCCeEeeeccCCCCCCCCCCcceeeecCceEEe
Confidence 6789995 999999999999999986569999999999999999999999999999998 2 6899999999999999
Q ss_pred eeecCCCCcEEEEEeecCccccccCCcceEEEEEEEEeCCcEEEEEEEEeCCCCcEEEeeecccceeeccce-EEEecCC
Q 021412 129 DSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTG-ASVKGLK 207 (312)
Q Consensus 129 ~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~~~~~~-~~v~~~~ 207 (312)
+...+++...++|.+.++++++++|||+|+++++|+|.+++|+++++++|+|+++|||++|+||||++++.. +.|.++.
T Consensus 81 ~~~~~~~~~~l~l~l~~~~~~~~~~P~~f~l~~~~~L~~~~L~~~l~v~N~g~~~~p~~~g~HpYf~v~d~~~~~v~gl~ 160 (269)
T cd09020 81 EVSEDEDGVTVSLELDDTDETRAIWPHAFELRLTVTLGFDTLELELTVTNTGDKPFSFTAALHTYFRVSDIEQVRVEGLE 160 (269)
T ss_pred eeecCCCceEEEEEeCCChhhhhcCCCceEEEEEEEEcCCcEEEEEEEECCCCCCeEehhccCeeEecCCccccEEeCCC
Confidence 876444567788889888888899999999999999999999999999999999999999999999999876 8999998
Q ss_pred CCceecCCCCCCCCCCCCccCceeccCCCcceEEeCCCCeEEE-cCCCCCeEEEEEcCCCcEEEeCCCCCC--------C
Q 021412 208 GCKTLNKDPDPKNPMEGKEERDRVTFPGFVDCIYLDAPSVVHL-DNGLGDTITIRNTNWSDAVLWNPHMQM--------E 278 (312)
Q Consensus 208 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l-d~~~g~~l~v~~~~~~~~vvwtp~~~~--------~ 278 (312)
++.|+|+...... ..+.+.+.+..++|++|.+.++.+.| |+..+++|+|..++++++|||||+.++ +
T Consensus 161 ~~~y~d~~~~~~~----~~~~~~~~~~~~~Drvy~~~~~~~~i~d~~~~~~i~i~~~~~~~~VVWNP~~~~~~~~~d~~~ 236 (269)
T cd09020 161 GATYLDKLTDQRE----KVQGGAVTFDGEVDRVYLNTPAPLTIDDPAWGRRIRIEKSGSPSAVVWNPWIEKAARMADFPD 236 (269)
T ss_pred CCceEEcCCCccc----cccCCceEECCccceEEeCCCCCEEEEcCCCCcEEEEEecCCCCEEEeCcchhhccccccCCc
Confidence 8888987754222 22345688888999999998878888 888899999999989999999998642 3
Q ss_pred CCCCcEEEEccCcccc-eEECCCCEEEEEEEEE
Q 021412 279 ACYKDFVCVENAKIGK-VQLEPEQSWTAKQHLS 310 (312)
Q Consensus 279 ~~~~~fvCiEP~~~~~-~~L~PGe~~~~~~~i~ 310 (312)
++|++||||||+++.+ ++|+|||+|+++++|+
T Consensus 237 ~~~~~fvCvEp~~~~~~~~L~pG~~~~~~~~i~ 269 (269)
T cd09020 237 DGYRRMVCVEAANVADPVTLAPGESHTLSQTIS 269 (269)
T ss_pred cccceEEEECeeecCCCEEECCCCCEEEEEEEC
Confidence 4589999999999876 9999999999999884
No 3
>cd09025 Aldose_epim_Slr1438 Aldose 1-epimerase, similar to Synechocystis Slr1438. Proteins similar to Synechocystis Slr1438 are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.2e-45 Score=338.68 Aligned_cols=244 Identities=25% Similarity=0.459 Sum_probs=202.7
Q ss_pred ceEEEEEcCC-ccEEEEe-cCCeEEEEEEECCCeeeeeeCCCCccCCCCCcccCccEEccCCCC---C---------CCC
Q 021412 50 LPKVVLTSAG-GSEAELY-LFGGCVTSWKASNDKDLLFVRPDAVFNWKKPISGGVPHCFPQFGP---G---------PMQ 115 (312)
Q Consensus 50 ~~~v~L~~~~-g~~a~I~-~~Gg~i~s~~~~~g~evL~~~~~~~~~~~~~irgG~p~lfP~~gr---g---------~~~ 115 (312)
++.++|+++. +++++|. ++||+|+||+. +|+|+||+++.+.++..++++||+|+|||++|| | .++
T Consensus 1 ~~~~~l~~~~~~~~~~v~p~~Ga~l~s~~~-~g~~~l~~~~~~~~~~~~~~~gG~p~l~P~~gri~~g~~~~~g~~~~lp 79 (271)
T cd09025 1 YPTYELSDEEAGSRLRVVPERGGLITRWTV-QGRELLYLDEERFADPAKSVRGGIPILFPICGNLPDDGYPLAGQEYTLK 79 (271)
T ss_pred CcEEEEEcCCCceEEEEecccCCEEEEEec-CCEEEEecCChHHhccccccCCCCcEEECccCCCCCCeEEECCEEEecc
Confidence 3678999974 7999999 99999999987 579999999888888888999999999999998 1 478
Q ss_pred CceeeecCCcEEEeeecCCCCcEEEEEeecCccccccCCcceEEEEEEEEeCCcEEEEEEEEeCCCCcEEEeeeccccee
Q 021412 116 QHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFR 195 (312)
Q Consensus 116 ~HG~~r~~~W~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~ 195 (312)
+|||+|+.+|++++.. +...|+|++.+.++++++|||+|+++++|+|++++|+++++++|+++++|||++|+||||+
T Consensus 80 ~HGf~r~~~W~v~~~~---~~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~ 156 (271)
T cd09025 80 QHGFARDLPWEVELLG---DGAGLTLTLRDNEATRAVYPFDFELELTYRLAGNTLEIAQRVHNLGDQPMPFSFGFHPYFA 156 (271)
T ss_pred CcccccCCCEEEEecC---CCcEEEEEEeCCHHHHhhCCceEEEEEEEEEeCCEEEEEEEEEECCCCcEEEEEecCceee
Confidence 9999999999998753 2567999998887777899999999999999999999999999999999999999999999
Q ss_pred eccce-EEEecCCCCceecCCCCCCCCCCCCccCceeccCCCcceEEeCCCCeEEE-cCCCCCeEEEEEc-CCCcEEEeC
Q 021412 196 ASVTG-ASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTFPGFVDCIYLDAPSVVHL-DNGLGDTITIRNT-NWSDAVLWN 272 (312)
Q Consensus 196 ~~~~~-~~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l-d~~~g~~l~v~~~-~~~~~vvwt 272 (312)
+++.. +++.++. ..+.|.......+ . ......+...+|++|..++ .+.| ++..+++|+|..+ +++++||||
T Consensus 157 ~~~~~~~~l~~~~-~~~~~~~~~~~~~---~-~~~~~~~~~~~D~~y~~~~-~~~l~~~~~~~~i~l~~~~~~~~~vvw~ 230 (271)
T cd09025 157 VPDKAKLSLDLPP-TRCFDQKTDEEAN---T-PGQFDETEEGVDLLFRPLG-PASLTDGARGLKITLDHDEPFSNLVVWT 230 (271)
T ss_pred CCchhccEEEcCH-HHHhhhccCCccC---C-cccccccccccchhhccCC-ceEEEecCCCEEEEEecCCCcceEEEec
Confidence 98755 6666653 4455544322111 1 1123334567999998876 6888 8877899999988 589999999
Q ss_pred CCCCCCCCCCcEEEEccCc-----c---cc-eEECCCCEEEEEEEE
Q 021412 273 PHMQMEACYKDFVCVENAK-----I---GK-VQLEPEQSWTAKQHL 309 (312)
Q Consensus 273 p~~~~~~~~~~fvCiEP~~-----~---~~-~~L~PGe~~~~~~~i 309 (312)
|.. ++||||||++ + .+ ++|+|||+++++++|
T Consensus 231 p~~------~~~vCvEp~t~~~nA~n~~~~~~~L~PGe~~~~~~~i 270 (271)
T cd09025 231 DKG------KDFVCLEPWTGPRNALNTGERLLLLPPGETEEASVRI 270 (271)
T ss_pred CCC------CcEEEEecCCCCccccCcCCccEEECCCCEEEEEEEE
Confidence 973 7899999984 3 24 999999999999987
No 4
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.5e-44 Score=317.48 Aligned_cols=248 Identities=30% Similarity=0.552 Sum_probs=209.1
Q ss_pred CCceEEEEEcCCccEEEEecCCeEEEEEEECCCeeeeeeCCCCccCCCCCcccCccEEccCCCC---CCCCCceeeecCC
Q 021412 48 GSLPKVVLTSAGGSEAELYLFGGCVTSWKASNDKDLLFVRPDAVFNWKKPISGGVPHCFPQFGP---GPMQQHGFARNMD 124 (312)
Q Consensus 48 ~~~~~v~L~~~~g~~a~I~~~Gg~i~s~~~~~g~evL~~~~~~~~~~~~~irgG~p~lfP~~gr---g~~~~HG~~r~~~ 124 (312)
+..+.+.+.+.. .+|.|+.+||+++||+.++++|+||.++..-++++++||||||+||||||+ +++|.|||||+++
T Consensus 22 ~~~~~~~~~h~~-~~a~islqGAqLLs~qP~ge~evLWLS~~~p~~~g~aIRGGIPICwPWFG~~~~~~~PaHG~AR~~~ 100 (287)
T COG0676 22 DQLPLIVVDHPL-GSAAISLQGAQLLSWQPKGEEEVLWLSSNAPFKGGAAIRGGIPICWPWFGPLAQQGLPAHGFARNRP 100 (287)
T ss_pred eccCceEeeccc-ceeEEecCCceEEEecCCCCCceEEecccCccCCCCcccCCCcEEEeccCccCCCCCCccchhhcCc
Confidence 556788888887 899999999999999997678999999999999999999999999999998 3579999999999
Q ss_pred cEEEeeecCCCCcEEEEEeecCccccccCCcceEEEEEEEEeCCcEEEEEEEEeCCCCcEEEeeecccceeeccce-EEE
Q 021412 125 WSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVTG-ASV 203 (312)
Q Consensus 125 W~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~~~~~~-~~v 203 (312)
|++.+..++++...++|.|...+. |+.|.+++++++ +.+|+++++..|..+ |+.++||||++.|+. +.|
T Consensus 101 W~l~~~~~~~~~v~v~f~L~~~~~-----p~~~~lr~~~~~-g~~le~~l~~~~~~s----~~~AlHtYF~VgDi~qv~V 170 (287)
T COG0676 101 WKLLEHDEDEDGVRVTFGLDLEDE-----PHDFTLRLTFRF-GETLELELESYGEES----FQAALHTYFRVGDIEQVEV 170 (287)
T ss_pred eeeeehhcccCceEEEEEeCCCcc-----ccceEEEEEeec-cceEEEEEEecChhH----HHHhhcceEEecchhheEe
Confidence 999999877777788899876653 899999999999 588999999998876 999999999999987 999
Q ss_pred ecCCCCceecCCCCCCCCCCCCccCceeccCCCcceEEeCCCCeEEE-cCCCCCeEEEEEcCCCcEEEeCCCCCC-----
Q 021412 204 KGLKGCKTLNKDPDPKNPMEGKEERDRVTFPGFVDCIYLDAPSVVHL-DNGLGDTITIRNTNWSDAVLWNPHMQM----- 277 (312)
Q Consensus 204 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~D~~y~~~~~~~~l-d~~~g~~l~v~~~~~~~~vvwtp~~~~----- 277 (312)
.|+.+.. +++......- ..+.+...+++..|++|++......| |+...|+|+|...+.+.+||||||..+
T Consensus 171 ~GL~~~~-~~~~~~~~~~---v~~~g~~~~~~~~DriY~~~~~~~~I~D~~~~R~I~l~~~~~~~~VvWNP~~~~s~~M~ 246 (287)
T COG0676 171 SGLGGVC-IDKVLNAEEE---VTQHGIVTFPGETDRIYLNPEPCSVIVDPALNRIITLEHQGHSSTVVWNPGHAKSSSMA 246 (287)
T ss_pred ccCCcee-hhhhhhceee---ccCCCceeeCCCccEEEEcCCCceEEecCcceEEEEEEecCCCCeEEECCCcccccccc
Confidence 9997654 4433321110 11234578899999999998777888 999999999999999999999999653
Q ss_pred ---CCCCCcEEEEccCcccc--eEECCCCEEEEEEEEEE
Q 021412 278 ---EACYKDFVCVENAKIGK--VQLEPEQSWTAKQHLSI 311 (312)
Q Consensus 278 ---~~~~~~fvCiEP~~~~~--~~L~PGe~~~~~~~i~v 311 (312)
+++|+.||||||+.+.. ..++|+ .++..++|++
T Consensus 247 d~~d~gyq~mlCvEta~~~~~l~~~~~~-~~~l~~~i~~ 284 (287)
T COG0676 247 DMPDDGYQTMLCVETARVGPDLKVGEPG-PVRLALKISV 284 (287)
T ss_pred ccccccceEEEEEeecccCcchhhcCCc-ceeeeeeeec
Confidence 34899999999998854 677777 7777777765
No 5
>cd09024 Aldose_epim_lacX Aldose 1-epimerase, similar to Lactococcus lactis lacX. Proteins similar to Lactococcus lactis lacX are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.5e-40 Score=307.57 Aligned_cols=241 Identities=22% Similarity=0.366 Sum_probs=187.3
Q ss_pred EEEEcCCccEEEEecCCeEEEEEEEC-CCeeeeeeCCCCccCCCCCcccCccEEccCCCC---C---------CCCCcee
Q 021412 53 VVLTSAGGSEAELYLFGGCVTSWKAS-NDKDLLFVRPDAVFNWKKPISGGVPHCFPQFGP---G---------PMQQHGF 119 (312)
Q Consensus 53 v~L~~~~g~~a~I~~~Gg~i~s~~~~-~g~evL~~~~~~~~~~~~~irgG~p~lfP~~gr---g---------~~~~HG~ 119 (312)
++|+|++ ++|+|.++||+|+||+.+ +|+|+||+.+.++|. +++|+|||++|| | .+++|||
T Consensus 1 ~~l~n~~-~~a~v~~~Ga~l~s~~~~~~g~e~l~~~~~~~~~------~~~p~l~P~~gri~~g~~~~~g~~~~l~~HGf 73 (288)
T cd09024 1 ITLENEF-LTVTISEHGAELTSIKDKKTGREYLWQGDPAYWG------RHAPILFPIVGRLKDDTYTIDGKTYPMPQHGF 73 (288)
T ss_pred CEEECCc-EEEEEeccCcEEEEEEeCCCCCEEEeCCChHHcC------CCCCEEEeeccCCCCCeEEECCEEeeccCCCC
Confidence 4799998 999999999999999985 589999988765553 457999999999 2 5789999
Q ss_pred eecCCcEEEeeecCCCCcEEEEEeecCccccccCCcceEEEEEEEEeCCcEEEEEEEEeCCCCcEEEeeecccceeeccc
Q 021412 120 ARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVT 199 (312)
Q Consensus 120 ~r~~~W~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~~~~~ 199 (312)
+|+++|+|++.. +.+|+|++.++++++++|||+|+++++|+|++++|+++++++|.++++|||++|+||||++++.
T Consensus 74 ~r~~~w~v~~~~----~~~v~l~l~~~~~~~~~~P~~~~~~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpYF~~~~~ 149 (288)
T cd09024 74 ARDMEFEVVEQS----DDSVTFELTDNEETLKVYPFDFELRVTYTLEGNTLKVTYEVKNPDDKTMPFSIGGHPAFNCPLD 149 (288)
T ss_pred cccCceEEEEcc----CCEEEEEEccCcchhhcCCeEEEEEEEEEEeCCEEEEEEEEEcCCCCceEEEEeCCceEECCCC
Confidence 999999998776 5689999998877778999999999999999999999999999999999999999999999753
Q ss_pred ------e--EEEecCCCCce--ecC---CCCCCCCCCCCccCceeccCCC--cce-E-EeCCC-CeEEE-cCCCCCeEEE
Q 021412 200 ------G--ASVKGLKGCKT--LNK---DPDPKNPMEGKEERDRVTFPGF--VDC-I-YLDAP-SVVHL-DNGLGDTITI 260 (312)
Q Consensus 200 ------~--~~v~~~~~~~~--~d~---~~~~~~~~~~~~~~~~~~~~~~--~D~-~-y~~~~-~~~~l-d~~~g~~l~v 260 (312)
. ++++....... +|. ++....+.+ ...+.+.+... .|. + |..+. +.+.| ++..++.|+|
T Consensus 150 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~l 227 (288)
T cd09024 150 EGEKFEDYYLEFEPKEELERIPLVGPLGLLGEKKPLL--LNEGTLPLTHDLFDDDALIFDNLKSREVTLKSKKTGHGVTV 227 (288)
T ss_pred CCCcccceEEEECCcccceEEecCCcccccccccccc--CCCCeecCCHHHhcCCEEEEcCCCccEEEEEcCCCCCEEEE
Confidence 1 66665211111 232 121111111 11233444432 233 3 34443 57888 7777889999
Q ss_pred EEcCCCcEEEeCCCCCCCCCCCcEEEEccCc-----c------c---c-eEECCCCEEEEEEEEEE
Q 021412 261 RNTNWSDAVLWNPHMQMEACYKDFVCVENAK-----I------G---K-VQLEPEQSWTAKQHLSI 311 (312)
Q Consensus 261 ~~~~~~~~vvwtp~~~~~~~~~~fvCiEP~~-----~------~---~-~~L~PGe~~~~~~~i~v 311 (312)
..++|++++||+|.. .++|||||||+ + + + ++|+|||+++++++|++
T Consensus 228 ~~~~~~~l~vwt~~~-----~~~~iciEP~t~~~da~~~~~~~~~~~gl~~L~PGe~~~~~~~i~~ 288 (288)
T cd09024 228 DFDDFPYLGIWSKPN-----GAPFVCIEPWYGLADSVGFDGDLEDKEGINKLEPGESFEASYSITI 288 (288)
T ss_pred EeCCCCEEEEeCCCC-----CCCEEEEcCCCCCCCcCCCCccccccCCCEEeCCCCEEEEEEEEEC
Confidence 998899999999972 17899999994 1 1 4 99999999999999975
No 6
>cd09021 Aldose_epim_Ec_YphB aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1e-38 Score=293.05 Aligned_cols=229 Identities=17% Similarity=0.246 Sum_probs=176.8
Q ss_pred EEEe-cCCeEEEEEEECC-CeeeeeeCCCCccCCCCCcccCccEEccCCCC---C------------------CCCCcee
Q 021412 63 AELY-LFGGCVTSWKASN-DKDLLFVRPDAVFNWKKPISGGVPHCFPQFGP---G------------------PMQQHGF 119 (312)
Q Consensus 63 a~I~-~~Gg~i~s~~~~~-g~evL~~~~~~~~~~~~~irgG~p~lfP~~gr---g------------------~~~~HG~ 119 (312)
+++. +.||.|+||+..+ |.|+||+.+.... .+.++|+|+|||++|| + ++++|||
T Consensus 2 ~~~v~~~Ga~l~sl~~~~~~~~~l~~~~~~~~---~~~~~~~p~LfP~~gRi~~~~~~~~g~~y~l~~n~~~~~~~~HG~ 78 (273)
T cd09021 2 LVLAPELGGSIAALTSRGDPTPLLRPADPDAA---DALAMACFPLVPFSNRIRGGRFLFAGREVALPPNTADEPHPLHGD 78 (273)
T ss_pred ceeCCCCCceEEEEEeCCCcceeeecCCcccc---CcccccCceEeccCCcccCCcEeECCEEEecCCCCCCCccCcccc
Confidence 5555 9999999999843 5899998765432 2347889999999998 1 3479999
Q ss_pred eecCCcEEEeeecCCCCcEEEEEeecCccccccCCcceEEEEEEEEeCCcEEEEEEEEeCCCCcEEEeeecccceeeccc
Q 021412 120 ARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVT 199 (312)
Q Consensus 120 ~r~~~W~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~~~~~ 199 (312)
+|+++|+|++.+ +++|+|++...+++ +||+|+++++|+|++++|+++++++|.++++|||++|+||||++++.
T Consensus 79 ar~~~w~v~~~~----~~~v~l~l~~~~~~---~P~~~~~~~~y~L~~~~L~i~~~~~N~~~~~~~~~~g~H~YF~~~~~ 151 (273)
T cd09021 79 GWRRPWQVVAAS----ADSAELQLDHEADD---PPWAYRAEQRFHLAGDGLSITLSVTNRGDRPMPAGLGFHPYFPRTPD 151 (273)
T ss_pred hhcCceEEEecc----CCeEEEEEecCCCC---CCEeEEEEEEEEEcCCCEEEEEEEEECCCCCceeeeecCccEecCCC
Confidence 999999998765 45788888876543 49999999999999999999999999999999999999999999865
Q ss_pred e-EEEecCCCCcee--cCCCCCCCCCCCCcc---Cceecc-CCCcceEEeCCCCeEEE-cCCCCCeEEEEEcC-CCcEEE
Q 021412 200 G-ASVKGLKGCKTL--NKDPDPKNPMEGKEE---RDRVTF-PGFVDCIYLDAPSVVHL-DNGLGDTITIRNTN-WSDAVL 270 (312)
Q Consensus 200 ~-~~v~~~~~~~~~--d~~~~~~~~~~~~~~---~~~~~~-~~~~D~~y~~~~~~~~l-d~~~g~~l~v~~~~-~~~~vv 270 (312)
. +++++.... .+ |.++. +....... .....+ ...+|++|....+.+.+ ++..+++|+|..++ ++++||
T Consensus 152 ~~l~v~~~~~~-~~d~~~lp~--~~~~~~~~~df~~~~~l~~~~~D~~f~~~~~~~~l~~~~~~~~i~v~~~~~~~~~vv 228 (273)
T cd09021 152 TRLQADADGVW-LEDEDHLPT--GLRPHPPDWDFSQPRPLPDRWIDNCFTGWDGAALIWPPERGLALTIEADAPFSHLVV 228 (273)
T ss_pred CEEEEecceEE-ecCCCcCCC--cccCCCcchhhcCCCcCCcccccccccCCCcceEEecCCCCcEEEEecCCCCCEEEE
Confidence 4 888875311 12 33432 21110100 111222 23689999875566777 88788999999997 999999
Q ss_pred eCCCCCCCCCCCcEEEEccCc-------c---cc-eEECCCCEEEEEEEEE
Q 021412 271 WNPHMQMEACYKDFVCVENAK-------I---GK-VQLEPEQSWTAKQHLS 310 (312)
Q Consensus 271 wtp~~~~~~~~~~fvCiEP~~-------~---~~-~~L~PGe~~~~~~~i~ 310 (312)
|||+. ++|||||||+ . .+ ++|+|||+++.+++|+
T Consensus 229 wtp~~------~~~vCvEP~~~~~da~~~~~~~~~~~L~pge~~~~~~~i~ 273 (273)
T cd09021 229 YRPPG------EDFFCLEPVSHAPDAHHGPGDPGLRVLAPGESLSLSMRIT 273 (273)
T ss_pred EcCCC------CCeEEEccccCCCCccCCcCCCCcEEeCCCCcEEEEEEEC
Confidence 99983 7899999995 1 13 8999999999999874
No 7
>PRK15172 putative aldose-1-epimerase; Provisional
Probab=100.00 E-value=7.6e-36 Score=277.47 Aligned_cols=244 Identities=15% Similarity=0.204 Sum_probs=186.5
Q ss_pred CCceEEEEEcCCccEEEEecCCeEEEEEEECCCeeeeeeCCCCccCCCCCcccCccEEccCCCC---C------------
Q 021412 48 GSLPKVVLTSAGGSEAELYLFGGCVTSWKASNDKDLLFVRPDAVFNWKKPISGGVPHCFPQFGP---G------------ 112 (312)
Q Consensus 48 ~~~~~v~L~~~~g~~a~I~~~Gg~i~s~~~~~g~evL~~~~~~~~~~~~~irgG~p~lfP~~gr---g------------ 112 (312)
....+++|++++ ++|+|..+||.|++|+. +|+++++..+...+ .+..+| ++|||++|| |
T Consensus 8 ~~~~~~~l~~~~-~~v~i~~~Ga~i~~l~~-~~~~vv~~~~~~~~---~~~~~g-~~L~P~anRI~~g~f~~~G~~y~L~ 81 (300)
T PRK15172 8 SSGQTISLAAGD-YQATIVTVGAGLAELTF-QGRHLVIPHKPEEM---PLAHLG-KVLIPWPNRIANGCYRYQGQEYQLP 81 (300)
T ss_pred CCcCEEEEeCCC-EEEEEecCCcEEEEEEE-CCEEEEecCCcccc---Cccccc-cEecccCCeecCCEEEECCEEEECC
Confidence 356789999998 99999999999999998 47888876654333 223344 799999998 1
Q ss_pred ------CCCCceeeecCCcEEEeeecCCCCcEEEEEeecCccccccCCcceEEEEEEEEe-CCcEEEEEEEEeCCCCcEE
Q 021412 113 ------PMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILN-TKSISTELTITNTDNKPFS 185 (312)
Q Consensus 113 ------~~~~HG~~r~~~W~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~-~~~L~i~~~v~N~~~~~~p 185 (312)
.+++||+++.++|+|.+.. +++|+|++...+ . .+|||+|+++++|+|+ +++|+|+++++|.++++||
T Consensus 82 ~N~~~~~~~lHG~~~~~~W~v~~~~----~~~v~l~~~~~~-~-~gyP~~~~~~v~y~L~~~~~L~i~~~~~n~~~~~~P 155 (300)
T PRK15172 82 INEHVSKAAIHGLLAWRDWQISELT----ATSVTLTAFLPP-S-YGYPFMLASQVIYSLDAATGLSVEIASQNIGDVPAP 155 (300)
T ss_pred CCCCCCCcccCCCccCceEEEEEec----CCEEEEEEEcCC-C-CCCCEEEEEEEEEEEccCCeEEEEEEEEECCCCcee
Confidence 3569999999999998765 457888887654 3 6899999999999998 4899999999999999999
Q ss_pred Eeeecccceeecc--c-e--EEEecCCCCceecCCCCCCCCCCCCccCceeccC-------CCcceEEeCCCC--eEEE-
Q 021412 186 FSSALHTYFRASV--T-G--ASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTFP-------GFVDCIYLDAPS--VVHL- 250 (312)
Q Consensus 186 f~~g~HpYF~~~~--~-~--~~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~-------~~~D~~y~~~~~--~~~l- 250 (312)
|++|+||||+++. . . +++++.+-.. .|....|++..+. .+..++|. ..+|++|..+.+ .+.|
T Consensus 156 ~~~g~HpYFnl~~~~~~~~~L~~~a~~~~~-~d~~~iPtg~~~~--~~~~~df~~~~~l~~~~~D~~f~~~~~~~~~~l~ 232 (300)
T PRK15172 156 YGVGIHPYLTCNLTSVDEYLLQLPANQVLA-VDEHANPTTLHHV--DELDLDFSQAKKIAATKIDHTFKTANDLWEVRIT 232 (300)
T ss_pred eEEecCceEecCCCChhceEEEEeCCeEEe-cCCCcCCCccccC--CCCCcCCCCCeECCCCCccCEEEcCCCceEEEEE
Confidence 9999999999873 2 2 6776542211 3433334442111 11122332 258999987654 6788
Q ss_pred cCCCCCeEEEEEcCCCcEEEeCCCCCCCCCCCcEEEEccCcc-------c-c-eEECCCCEEEEEEEEEE
Q 021412 251 DNGLGDTITIRNTNWSDAVLWNPHMQMEACYKDFVCVENAKI-------G-K-VQLEPEQSWTAKQHLSI 311 (312)
Q Consensus 251 d~~~g~~l~v~~~~~~~~vvwtp~~~~~~~~~~fvCiEP~~~-------~-~-~~L~PGe~~~~~~~i~v 311 (312)
++.+|++|++.++ .+++|||+|... .+++||||||.. + + ++|+|||+++.+++|..
T Consensus 233 ~~~~g~~l~~~~~-~~~~~vyt~~~~----~~~~~ciEp~t~p~dA~n~~~g~~~L~pge~~~~~~~i~~ 297 (300)
T PRK15172 233 HPQQALSVSLCSD-QPWLQIYSGEKL----QRQGLAVEPMSCPPNAFNSGIDLLLLEPGKTHRLFFNIGG 297 (300)
T ss_pred eCCCCeEEEEEcC-CCEEEEECCCCC----CCCEEEEeCCCCCCCCCCCCCCCEEECCCCEEEEEEEEEE
Confidence 8888999999986 689999998731 168999999963 1 4 99999999999999976
No 8
>cd01081 Aldose_epim aldose 1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism; they catalyze the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=6.6e-36 Score=274.07 Aligned_cols=237 Identities=22% Similarity=0.264 Sum_probs=178.2
Q ss_pred EEEEecCCeEEEEEEECCCeeeeeeCCCCccCCCCCcccCccEEccCCCC--C-----------------CCCCceeeec
Q 021412 62 EAELYLFGGCVTSWKASNDKDLLFVRPDAVFNWKKPISGGVPHCFPQFGP--G-----------------PMQQHGFARN 122 (312)
Q Consensus 62 ~a~I~~~Gg~i~s~~~~~g~evL~~~~~~~~~~~~~irgG~p~lfP~~gr--g-----------------~~~~HG~~r~ 122 (312)
+++|..+||.|.+|+.++++|+||..+........+.++|.|+|||++|| + ++++||++|+
T Consensus 2 ~~~i~~~Ga~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~P~~gri~~g~~~~~g~~~~~~~~~~~~~lHG~~~~ 81 (284)
T cd01081 2 VAVIAPRGANIISLKVKGDVDLLWGYPDAEEYPLAPTGGGGAILFPFANRISDGRYTFDGKQYPLNEDEGGNAIHGFVRN 81 (284)
T ss_pred EEEEeCcCcEEEEEEcCCCceEEecCCChhhhcccCCCCcceEecCcCCcccCCEEeECCEEecCCCCCCCccccCCeec
Confidence 68899889999999985349999998775554455678899999999998 1 5789999999
Q ss_pred CCcEEEeeecCCCCcEEEEEeecCccccccCCcceEEEEEEEEeCCcEEEEEEEEeCCCCcEEEeeecccceeeccc---
Q 021412 123 MDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVT--- 199 (312)
Q Consensus 123 ~~W~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~~~~~--- 199 (312)
++|++++.+ +++.+|+|++...+++. +|||+|+++++|+|++++|+|+++|+|+++++|||++|+||||++++.
T Consensus 82 ~~w~v~~~~--~~~~~v~l~~~~~~~~~-~~P~~~~l~~ty~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~~~~~~~~ 158 (284)
T cd01081 82 LPWRVVATD--EEEASVTLSYDLNDGPG-GYPFPLELTVTYTLDADTLTITFTVTNLGDEPMPFGLGWHPYFGLPGVAIE 158 (284)
T ss_pred CcEEEEEec--cCCcEEEEEEEeCCCCC-CCCEEEEEEEEEEEeCCeEEEEEEEEeCCCCCcceeeecCceEecCCCccc
Confidence 999998765 23568999998877664 899999999999999999999999999999999999999999999864
Q ss_pred e--EEEecCCCCceecCCCCCCCCCCCC--c-cCceecc-CCCcceEEeCCC-----CeEEE-cCCCCCeEEEEEcCCCc
Q 021412 200 G--ASVKGLKGCKTLNKDPDPKNPMEGK--E-ERDRVTF-PGFVDCIYLDAP-----SVVHL-DNGLGDTITIRNTNWSD 267 (312)
Q Consensus 200 ~--~~v~~~~~~~~~d~~~~~~~~~~~~--~-~~~~~~~-~~~~D~~y~~~~-----~~~~l-d~~~g~~l~v~~~~~~~ 267 (312)
. +.+++. .....|....+++..... . ......+ ...+|++|.... ..+.| ++..++.|++..+. |+
T Consensus 159 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~ 236 (284)
T cd01081 159 DLRLRVPAS-KVLPLDDLLPPTGELEVPGEEDFRLGRPLGGGELDDCFLLLGNDAGTAEARLEDPDSRISVEFETGW-PF 236 (284)
T ss_pred ceEEEecCC-EEEecCCccCCCCccCCcccccccCCcCcCCcccccccccCcCCCCeeEEEEECCCCeEEEEEeCCC-CE
Confidence 2 555441 111123222222211100 0 0111222 246888886543 26788 88778888888875 99
Q ss_pred EEEeCCCCCCCCCCCcEEEEccCcc-------c--c-eEEC-CCCEEEEEE
Q 021412 268 AVLWNPHMQMEACYKDFVCVENAKI-------G--K-VQLE-PEQSWTAKQ 307 (312)
Q Consensus 268 ~vvwtp~~~~~~~~~~fvCiEP~~~-------~--~-~~L~-PGe~~~~~~ 307 (312)
++||+|.. ..++|||||||+. . + ++|+ |||+++.++
T Consensus 237 ~~v~t~~~----~~~~~~ciEP~t~~~da~~~~~~~~~~L~~pge~~~~~~ 283 (284)
T cd01081 237 WQVYTGDG----GRRGSVAIEPMTSAPDAFFNNNGGLITLKPPGETRTFSI 283 (284)
T ss_pred EEEECCCC----CcCCEEEEccccCCCCCCCCCCCceEEeCCCCceEEEEe
Confidence 99999973 1278999999963 1 3 9999 999988765
No 9
>PF01263 Aldose_epim: Aldose 1-epimerase; InterPro: IPR008183 Aldose 1-epimerase (5.1.3.3 from EC) (mutarotase) is the enzyme responsible for the anomeric interconversion of D-glucose and other aldoses between their alpha- and beta-forms. The sequence of mutarotase from two bacteria, Acinetobacter calcoaceticus and Streptococcus thermophilus is available []. It has also been shown that, on the basis of extensive sequence similarities, a mutarotase domain seems to be present in the C-terminal half of the fungal GAL10 protein which encodes, in the N-terminal part, UDP-glucose 4-epimerase.; GO: 0016853 isomerase activity, 0005975 carbohydrate metabolic process; PDB: 1YGA_A 3DCD_A 2CIQ_A 2CIS_A 2CIR_A 2HTB_C 2HTA_B 3Q1N_A 1NSZ_B 1NSR_B ....
Probab=100.00 E-value=9.4e-36 Score=275.87 Aligned_cols=255 Identities=21% Similarity=0.386 Sum_probs=175.6
Q ss_pred eEEEEEcCCccEEEEecCCeEEEEEEECC-CeeeeeeCCC--CccCCC----------CCcc-c-----CccEEccCCCC
Q 021412 51 PKVVLTSAGGSEAELYLFGGCVTSWKASN-DKDLLFVRPD--AVFNWK----------KPIS-G-----GVPHCFPQFGP 111 (312)
Q Consensus 51 ~~v~L~~~~g~~a~I~~~Gg~i~s~~~~~-g~evL~~~~~--~~~~~~----------~~ir-g-----G~p~lfP~~gr 111 (312)
++|+|+|+.+++|+|..+||+|+||+.++ ++|+||+.++ .+++.. +|++ | |.+++||+.+.
T Consensus 1 ~~itL~n~~~~~~~i~~~Ga~l~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~p~~~Ri~~g~~~~~g~~~~l~~~~~ 80 (300)
T PF01263_consen 1 DLITLENGNGLSAVIPEYGAELTSLQVKGNGREVLWQPDPADAYWSNSFGGPILFPWPNRIRNGRFTFDGKPYCLPWNGP 80 (300)
T ss_dssp EEEEEEETTSEEEEEETBTTEEEEEEETTTTEESB-B-STHHHHHHSTCTTCEECSCSSEEGGGEEEETTEEEEBSSSBT
T ss_pred CEEEEECCCceEEEEeccCcEEEEEEECCCCeEEecCCCChHHhcccccceeeeecccceEECCEEEECCEEEEeeeccC
Confidence 47999999559999999999999999954 5999999876 222221 2222 3 45555555552
Q ss_pred CCCCCceeeecCCcEEEeeecCCCCcEEEEEeecCccccccCCcceEEEEEEEEeCCc-EEEEEEEEeCCCCcEEEeeec
Q 021412 112 GPMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKS-ISTELTITNTDNKPFSFSSAL 190 (312)
Q Consensus 112 g~~~~HG~~r~~~W~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~-L~i~~~v~N~~~~~~pf~~g~ 190 (312)
.++++|||+|+++|+|++..+ .++++|++....+..++|||+|+++++|+|.+++ |+++++|+|.+ ++|||++|+
T Consensus 81 ~~~~~HG~~~~~~w~v~~~~~---~~~~~~~~~~~~~~~~~yP~~~~l~~~y~L~~~~~L~i~~~v~n~~-~~~p~~~g~ 156 (300)
T PF01263_consen 81 YPNPIHGFARNKPWEVEEQSE---DDSVSFTLVSDPDGEEGYPFDFRLRITYTLDENGKLTITYEVTNDG-KPMPFNLGF 156 (300)
T ss_dssp TTBEETBSGGGSB-EEEEEEE---TTEEEEEEEEEETTHHHSSSEEEEEEEEEEETTEEEEEEEEEEESS-SEEEEBEEE
T ss_pred CCcCCCCCcccccEEEEEecc---cceEEEEEEecCccceeeccceeeEEEEEECCCCeEEEEEEEEecC-ccEEeeccc
Confidence 378899999999999999872 3677777776444447799999999999999999 99999999999 999999999
Q ss_pred ccceeec----cce-EEEecCCCCceecCCCCCCCC---CCCC----ccCceeccCC-CcceEEeCCC-CeEEE-cCCCC
Q 021412 191 HTYFRAS----VTG-ASVKGLKGCKTLNKDPDPKNP---MEGK----EERDRVTFPG-FVDCIYLDAP-SVVHL-DNGLG 255 (312)
Q Consensus 191 HpYF~~~----~~~-~~v~~~~~~~~~d~~~~~~~~---~~~~----~~~~~~~~~~-~~D~~y~~~~-~~~~l-d~~~g 255 (312)
||||+++ +.. +.+++..... +++...|++. +... .+...+.... .+|++|.... ....+ +...+
T Consensus 157 HpyF~l~~~~~~~~~~~~~~~~~~~-~~~~~lptg~~~~~~~~~~d~~~~~~i~~~~~~~D~~f~~~~~~~~~~~~~~~~ 235 (300)
T PF01263_consen 157 HPYFNLPGEDIDDHQLQVPADEYLE-LDERLLPTGELAPVKGTPFDFRQGRPIGDDIPGLDHCFVLDPPGRPVIRLRSPG 235 (300)
T ss_dssp EEEEETTCTSGTTGEEEEEEEEEEE-EETTSSEEEEEEETTTCETCGSSSEEECSSCTCEEEEEEESSSSEEEEEEETTT
T ss_pred cceEEcCCcceeeeEEEeccceeee-cccccCCceeeecccCCccccccCeeecccccccceEEEcCCCccEEEEeeccc
Confidence 9999999 333 7777643333 3332222221 1110 1112222222 6899998765 44444 45556
Q ss_pred CeEEEEEc-CCCcEEEeCCCCCCCCCCCcEEEEccCcc-------c-c-eEECCCCEEEEEEEEE
Q 021412 256 DTITIRNT-NWSDAVLWNPHMQMEACYKDFVCVENAKI-------G-K-VQLEPEQSWTAKQHLS 310 (312)
Q Consensus 256 ~~l~v~~~-~~~~~vvwtp~~~~~~~~~~fvCiEP~~~-------~-~-~~L~PGe~~~~~~~i~ 310 (312)
+++.|... ++|++|||+|+..........+|+||+.+ . + ++|+|||+++.+++|+
T Consensus 236 ~~i~l~~~~~~p~~~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGe~~~~~~~~~ 300 (300)
T PF01263_consen 236 SGISLEFSTSFPWLVVWTPGFDPKYICIEPIAIEPDFVPDEANNPGKGLIVLAPGESYSFSTRYT 300 (300)
T ss_dssp EEEEEEEEESSSEEEEEEETTSSTEETTCEEECEEESECECCCECCHEGEEEETTSEEEEEEEEE
T ss_pred ceEEEEecCCCCcEEEECCCCcccccCCcccccCCCeeecccccCCCCCEEECCCCEEEEEEEEC
Confidence 77777765 79999999998631000012445555432 2 4 9999999999999986
No 10
>cd09022 Aldose_epim_Ec_YihR Aldose 1-epimerase, similar to Escherichia coli YihR. Proteins similar to Escherichia coli YihR are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=100.00 E-value=1.6e-34 Score=266.59 Aligned_cols=234 Identities=17% Similarity=0.232 Sum_probs=173.1
Q ss_pred cEEEEecCCeEEEEEEECCCeeeeeeCCCCccCCCCCcccCccEEccCCCC---C------------------CCCCcee
Q 021412 61 SEAELYLFGGCVTSWKASNDKDLLFVRPDAVFNWKKPISGGVPHCFPQFGP---G------------------PMQQHGF 119 (312)
Q Consensus 61 ~~a~I~~~Gg~i~s~~~~~g~evL~~~~~~~~~~~~~irgG~p~lfP~~gr---g------------------~~~~HG~ 119 (312)
++|+|..+||.|++|+. +|+|+|+..++... .... .| ++|||++|| | .+++||+
T Consensus 1 ~~v~i~~~Ga~l~~~~~-~g~~il~~~~~~~~--~~~~-~g-~~l~p~~nRi~~g~~~~~G~~y~l~~N~~~~~~~~HG~ 75 (284)
T cd09022 1 YRAVVTEVGAGLRSLTV-GGRDLVEPYPADEV--PPGA-AG-QVLAPWPNRIADGRYTFDGVEHQLPITEPERGNAIHGL 75 (284)
T ss_pred CEEEEEecCcEEEEEEE-CCEEEEecCCCccC--Cccc-cc-cEEeeeCCcccCCEEEECCEEEEccCcCCCCCCCCcCC
Confidence 47889999999999998 68999997765432 1122 33 699999998 1 3459999
Q ss_pred eecCCcEEEeeecCCCCcEEEEEeecCccccccCCcceEEEEEEEEeCCcEEEEEEEEeCCCCcEEEeeecccceeeccc
Q 021412 120 ARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASVT 199 (312)
Q Consensus 120 ~r~~~W~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~~~~~ 199 (312)
+|.++|+|++.+ ..+|+|++.+.. .++|||+|+++++|+|++++|+++++++|.++++|||++|+||||++++.
T Consensus 76 ~~~~~w~v~~~~----~~~v~l~l~~~~--~~~yP~~~~~~~~y~L~~~~L~i~~~v~N~~~~~~p~~~g~HpyF~l~~~ 149 (284)
T cd09022 76 VRWADWQLVEHT----DSSVTLRTRIPP--QPGYPFTLELTVTYELDDDGLTVTLTATNVGDEPAPFGVGFHPYLSAGGA 149 (284)
T ss_pred eecceEEEeecc----CCeEEEEEEeCC--ccCCCceEEEEEEEEEcCCcEEEEEEEEeCCCCCeEeeeEecceEecCCC
Confidence 999999998765 457889887753 37899999999999999999999999999999999999999999999853
Q ss_pred --e---EEEecCCCCceecCCCCCCCCCCCCccCceecc------C-CCcceEEeCCC------CeEEE-cCCCCCeEEE
Q 021412 200 --G---ASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTF------P-GFVDCIYLDAP------SVVHL-DNGLGDTITI 260 (312)
Q Consensus 200 --~---~~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~------~-~~~D~~y~~~~------~~~~l-d~~~g~~l~v 260 (312)
. +++++.+... +|....|++..+. ....+++ . ..+|++|..+. ..++| ++.+ +.|+|
T Consensus 150 ~~~~~~L~~~a~~~~~-~d~~~lptg~~~~--~~~~~df~~~~~l~~~~~D~~f~~~~~~~~~~~~~~l~~~~~-~~l~l 225 (284)
T cd09022 150 PLDECTLTLPADTWLP-VDERLLPTGTEPV--AGTPYDFRTGRRLGGTALDTAFTDLTRDADGRARARLTGPDG-RGVEL 225 (284)
T ss_pred CcccEEEEEECceEEe-cCCccCCCcCcCC--CCCCccCcCCccccCccccccccccccCCCCcEEEEEECCCC-CEEEE
Confidence 2 6666543211 3432233332111 1112233 2 26899886532 26788 7775 99999
Q ss_pred EEc-CCCcEEEeCCCCCCCCCCCcEEEEccCcc-----c---c-eEECCCCEEEEEEEE
Q 021412 261 RNT-NWSDAVLWNPHMQMEACYKDFVCVENAKI-----G---K-VQLEPEQSWTAKQHL 309 (312)
Q Consensus 261 ~~~-~~~~~vvwtp~~~~~~~~~~fvCiEP~~~-----~---~-~~L~PGe~~~~~~~i 309 (312)
.++ ++|+++||+|........++|||||||+. + + ++|+|||+++.+++|
T Consensus 226 ~~~~~~~~~~vyt~~~~~~~~~~~~iclEP~~~~~da~n~~~~~~~L~pge~~~~~~~i 284 (284)
T cd09022 226 WADESFPWVQVFTADTLPPPGRRRGLAVEPMTCPPNAFNSGTDLIVLAPGETHTASWGI 284 (284)
T ss_pred EECCCCCEEEEECCCCCCCCCCCCEEEEccCCCCCCcCcCCCCcEEECCCCEEEEEEeC
Confidence 996 78999999986310011268999999963 1 3 899999999998875
No 11
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-32 Score=255.77 Aligned_cols=254 Identities=20% Similarity=0.305 Sum_probs=177.4
Q ss_pred cCCCceEEEEEcCCccEEEEecCCeEEEEEEECCCeeeeeeCCC--CccCCCCCcccCccEEccCCCC---C--------
Q 021412 46 GEGSLPKVVLTSAGGSEAELYLFGGCVTSWKASNDKDLLFVRPD--AVFNWKKPISGGVPHCFPQFGP---G-------- 112 (312)
Q Consensus 46 ~~~~~~~v~L~~~~g~~a~I~~~Gg~i~s~~~~~g~evL~~~~~--~~~~~~~~irgG~p~lfP~~gr---g-------- 112 (312)
.......+++.++.+..++|..+||.|++|+. +|+++++..+. .+.... . .+.++|+|++|| |
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~~~~GA~l~~l~~-~~~~v~l~~~~~~~~~~~~--~-~~ga~l~p~anRI~~g~f~~~G~~ 83 (308)
T COG2017 8 DGQPVRLLTLGNGGGMVVTVPDWGATLTSLRV-NGRNLLLGFDDAESYPATR--G-YGGAILGPYANRISNGRFTLDGKT 83 (308)
T ss_pred CCCceEEEEEeCCCeEEEEEccCCcEEEEEEE-CCceEEeecCCHHHhcccc--c-cccceecCccCcccCCEEEECCEE
Confidence 34556788888888777777799999999998 68888776653 222211 1 245889999998 1
Q ss_pred --------CCCCceeeecCCcEEEeeecCCCCcEEEEEeecCccccccCCcceEEEEEEEEeCCcEEEEEEEEeCCCCcE
Q 021412 113 --------PMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPF 184 (312)
Q Consensus 113 --------~~~~HG~~r~~~W~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~ 184 (312)
++++||+++..+|+|.+.+.+++. .++|.+++.+ .+|||+|+++++|+|++++|+|+++++|.++++|
T Consensus 84 y~L~~N~~~~~lHG~~~~~~~~v~~~~~~~~~-~~~l~~~~~~---~gyP~~l~~~vtY~L~~~~L~v~~~~~n~~~~~~ 159 (308)
T COG2017 84 YQLPPNEGGNALHGGARDFDWQVWEAEEDDNA-EFSLVLRDGE---DGYPGNLEATVTYTLNEDGLTVTYEVTNDGDEPT 159 (308)
T ss_pred EEeCCCCCCccccCCccCCCeeEEEEEeccCC-EEEEEecccC---CCCCceEEEEEEEEEcCCCEEEEEEEEeCCCCcc
Confidence 466999999999999998743322 5666666554 4599999999999999888999999999999999
Q ss_pred EEeeecccceeeccce-----EEEecCCCCceecCCCCCCCCCC--CCccCceeccCCCcceEEeCC-----CCeEEE-c
Q 021412 185 SFSSALHTYFRASVTG-----ASVKGLKGCKTLNKDPDPKNPME--GKEERDRVTFPGFVDCIYLDA-----PSVVHL-D 251 (312)
Q Consensus 185 pf~~g~HpYF~~~~~~-----~~v~~~~~~~~~d~~~~~~~~~~--~~~~~~~~~~~~~~D~~y~~~-----~~~~~l-d 251 (312)
||++|+||||++++.. +......-....+..+.|++.++ .......+...+.+|+.|... ...+.| +
T Consensus 160 p~~~g~HpYFnl~~~~~~~~~~~~~~~~~l~~~~~~~ip~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~~~~~a~l~~ 239 (308)
T COG2017 160 PFNLGNHPYFNLPGDGRLEHILAIASDYYLPVDDEEPIPTGDIKREPKPLEDDFAADDPYDHAFLLNGARGLKPAARLYD 239 (308)
T ss_pred eecccccceEecCCCCCcccEEEecCCceEEcccCCCCCcccccccccccccccccccccccceeeccccCCcceEEEEc
Confidence 9999999999998641 22211110111122444443221 000011111112247766433 247788 8
Q ss_pred CCCCCeEEEEEcCCCcEEEeCCCCCCCCCCCcEEEEccCc-c----c----c-eEECCCCEEEEEEEEEE
Q 021412 252 NGLGDTITIRNTNWSDAVLWNPHMQMEACYKDFVCVENAK-I----G----K-VQLEPEQSWTAKQHLSI 311 (312)
Q Consensus 252 ~~~g~~l~v~~~~~~~~vvwtp~~~~~~~~~~fvCiEP~~-~----~----~-~~L~PGe~~~~~~~i~v 311 (312)
+.++++|+|.++ -|.++||+.... +..+++|||||. + + + .+|+|||+++..++|++
T Consensus 240 ~~~~~~l~v~t~-~p~~~~yt~~~~---~~~~~~clEp~~~~pdA~n~~~~~~~~L~pGe~~~~~~~~~~ 305 (308)
T COG2017 240 PDSGLSLEVETD-EPFVQLYTGNFL---AGRDGLCLEPQSGLPDAFNHPGFGLIVLEPGETYSAETRFRF 305 (308)
T ss_pred CCCCeEEEEEeC-CCeEEEEeCCCC---CcCCeEEeeeccCCCCcCCCCCcccceeCCCCEEEEEEEEEE
Confidence 999999999987 566666664321 027899999996 3 2 2 77999999999999986
No 12
>cd09019 galactose_mutarotase_like galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.
Probab=100.00 E-value=3.2e-32 Score=256.04 Aligned_cols=247 Identities=15% Similarity=0.230 Sum_probs=177.6
Q ss_pred EEEEcCCccEEEEecCCeEEEEEEECC--C--eeeeeeCC-CCccCCCCCcccCccEEccCCCC---C------------
Q 021412 53 VVLTSAGGSEAELYLFGGCVTSWKASN--D--KDLLFVRP-DAVFNWKKPISGGVPHCFPQFGP---G------------ 112 (312)
Q Consensus 53 v~L~~~~g~~a~I~~~Gg~i~s~~~~~--g--~evL~~~~-~~~~~~~~~irgG~p~lfP~~gr---g------------ 112 (312)
++|+|+++++++|..+||.|.+|+.++ | +|+|+..+ ...|....+..| +++.|++|| |
T Consensus 2 ~~l~n~~~~~~~i~~~GA~l~~l~~~~~~g~~~~~v~~~~~~~~~~~~~~~~g--~~lgp~anRi~~g~~~~~G~~y~l~ 79 (326)
T cd09019 2 YTLTNGNGLRVSILNYGATIQSLKVPDKNGKLRDVVLGFDDLEDYLKNSPYFG--ATVGRVANRIANGRFTLDGKTYQLE 79 (326)
T ss_pred EEEECCCCcEEEEECcCcEEEEEEEECCCCCEeeeEECCCCHHHHhhCCCccC--CcccCcCCeecCCEEEECCEEEEcc
Confidence 689999559999999999999999843 3 78998885 444554445554 457888888 1
Q ss_pred ----CCCCcee----eecCCcEEEeeecCCCCcEEEEEeecCccccccCCcceEEEEEEEEeC-CcEEEEEEEEeCCCCc
Q 021412 113 ----PMQQHGF----ARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNT-KSISTELTITNTDNKP 183 (312)
Q Consensus 113 ----~~~~HG~----~r~~~W~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~-~~L~i~~~v~N~~~~~ 183 (312)
.+++||. .+ .+|++.+.+ +.+|+|++.+.+. .++|||+|+++++|+|++ ++|+|+++++| +++
T Consensus 80 ~Ne~~~~LHGg~~G~~~-~~w~~~~~~----~~~v~l~~~~~~~-~~gyP~~~~~~v~y~L~~~~~L~i~~~~~~--~~~ 151 (326)
T cd09019 80 ANEGPNHLHGGPKGFDK-RVWDVEEVE----ENSVTFSLVSPDG-EEGFPGNLTVTVTYTLTDDNELTIEYEATT--DKP 151 (326)
T ss_pred CCCCCcccCCCCccccC-cEEeEEecc----CCEEEEEEECCcc-cCCCCeEEEEEEEEEECCCCEEEEEEEEEe--CCC
Confidence 3445555 55 499998765 6689999987743 589999999999999998 99999999997 599
Q ss_pred EEEeeecccceeecc-----ce---EEEecCCCCceecCCCCCCCCC---CCC----ccCcee---------cc-CCCcc
Q 021412 184 FSFSSALHTYFRASV-----TG---ASVKGLKGCKTLNKDPDPKNPM---EGK----EERDRV---------TF-PGFVD 238 (312)
Q Consensus 184 ~pf~~g~HpYF~~~~-----~~---~~v~~~~~~~~~d~~~~~~~~~---~~~----~~~~~~---------~~-~~~~D 238 (312)
|||++|+||||+++. .. +++++..-.. +|....|++.+ ... .....+ .. ...+|
T Consensus 152 ~p~~~g~HpyFnl~~~~~~~~~~~~L~~~a~~~~~-~d~~~iPtG~~~~~~~~~~df~~~~~l~~~~~~~~~~~~~~~~D 230 (326)
T cd09019 152 TPVNLTNHSYFNLAGEGSGDILDHELQINADRYLP-VDEELIPTGEILPVAGTPFDFRKPKPIGRIDLDDEQLKLGGGYD 230 (326)
T ss_pred eEecccceeeEecCCCCCCCccceEEEEecCcEEe-eCCCCCcCCCceecCCCCccccCccCccccccchhhcccCCCcc
Confidence 999999999999984 22 6776542211 34323333311 110 000011 11 23699
Q ss_pred eEEe--CC----CCeEEE-cCCCCCeEEEEEcCCCcEEEeCCCCCCC------C--CCCcEEEEccCcc----c----c-
Q 021412 239 CIYL--DA----PSVVHL-DNGLGDTITIRNTNWSDAVLWNPHMQME------A--CYKDFVCVENAKI----G----K- 294 (312)
Q Consensus 239 ~~y~--~~----~~~~~l-d~~~g~~l~v~~~~~~~~vvwtp~~~~~------~--~~~~fvCiEP~~~----~----~- 294 (312)
++|. .+ ...++| ++.++++|+|.++ .|++|||++..... . ....+||||||.. + +
T Consensus 231 ~~f~l~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~~~vyT~~~~~~~~~~~~~~~~~~~~iclEpq~~pdA~n~~~~g~ 309 (326)
T cd09019 231 HNFVLDKGGGKLRPAARLTSPESGRKLEVYTT-QPGVQFYTGNFLDGTPGGGGKVYGKRSGFCLETQHFPDAPNHPNFPS 309 (326)
T ss_pred eEEEECCCCCccceeEEEEcCCCCcEEEEecC-CCEEEEEeCCCCCcccCCCCcEeCCCCEEEEeccCCCCcccccCCCC
Confidence 9996 22 235788 8888999999886 89999999863210 0 2367899999953 1 3
Q ss_pred eEECCCCEEEEEEEEEE
Q 021412 295 VQLEPEQSWTAKQHLSI 311 (312)
Q Consensus 295 ~~L~PGe~~~~~~~i~v 311 (312)
++|+|||+++..++|++
T Consensus 310 ~~L~pge~~~~~~~y~f 326 (326)
T cd09019 310 IILRPGETYRHTTVYRF 326 (326)
T ss_pred eEECCCCEEEEEEEEEC
Confidence 99999999999998863
No 13
>PLN00194 aldose 1-epimerase; Provisional
Probab=99.97 E-value=1.2e-29 Score=239.34 Aligned_cols=256 Identities=14% Similarity=0.183 Sum_probs=179.6
Q ss_pred CCceEEEEEcCCccEEEEecCCeEEEEEEEC--CC--eeeeeeCCCC-ccCCCCCcccCccEEccCCCC---C-------
Q 021412 48 GSLPKVVLTSAGGSEAELYLFGGCVTSWKAS--ND--KDLLFVRPDA-VFNWKKPISGGVPHCFPQFGP---G------- 112 (312)
Q Consensus 48 ~~~~~v~L~~~~g~~a~I~~~Gg~i~s~~~~--~g--~evL~~~~~~-~~~~~~~irgG~p~lfP~~gr---g------- 112 (312)
+.+..++|+|+. ++++|..+||.|++|+.+ +| ++++...++. .+....+.. | +++.|++|| |
T Consensus 7 ~~~~~~~L~n~~-l~~~i~~~GA~l~s~~~~~~~g~~~~vvlg~~~~~~y~~~~~~~-G-a~lgp~anRI~~g~~~~~G~ 83 (337)
T PLN00194 7 EKPGIYELKNGN-ISVKLTNYGATITSLILPDKNGKLADVVLGFDSVEPYKNDSPYF-G-AIVGRVANRIKGAKFTLNGV 83 (337)
T ss_pred CeeEEEEEEeCC-EEEEEECCCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCcc-C-CeeCCCCCceeCCEEEECCE
Confidence 445678999988 999999999999999973 34 5676544432 232223444 3 348999888 1
Q ss_pred ---------CCCCceeee---cCCcEEEeeecCCCCcEEEEEeecCccccccCCcceEEEEEEEEeC-CcEEEEEEEEeC
Q 021412 113 ---------PMQQHGFAR---NMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNT-KSISTELTITNT 179 (312)
Q Consensus 113 ---------~~~~HG~~r---~~~W~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~-~~L~i~~~v~N~ 179 (312)
.+++||+.+ .+.|+|+..+ ++++.+|+|++.+.+. ..+|||+|+++++|+|++ ++|+|+++++|.
T Consensus 84 ~y~l~~N~~~~~lHGg~~G~~~~~w~v~~~~-~~~~~~v~~~l~~~~~-~~gyP~~~~~~v~Y~L~~~~~L~i~~~~~n~ 161 (337)
T PLN00194 84 TYKLPPNNGPNSLHGGPKGFSKVVWEVAKYK-KGEKPSITFKYHSFDG-EEGFPGDLSVTVTYTLLSSNTLRLDMEAKPL 161 (337)
T ss_pred EEEeccCCCCcccCCCCcccCceEEeEEEec-cCCCcEEEEEEECCCc-CCCCCEEEEEEEEEEECCCCeEEEEEEEEEC
Confidence 466897653 4789998765 2334789999987643 579999999999999984 899999999999
Q ss_pred CCCcEEEeeecccceeeccc-----e---EEEecCCCCceecCCCCCCCC---CCCCc-c-Cceecc-------CCCcce
Q 021412 180 DNKPFSFSSALHTYFRASVT-----G---ASVKGLKGCKTLNKDPDPKNP---MEGKE-E-RDRVTF-------PGFVDC 239 (312)
Q Consensus 180 ~~~~~pf~~g~HpYF~~~~~-----~---~~v~~~~~~~~~d~~~~~~~~---~~~~~-~-~~~~~~-------~~~~D~ 239 (312)
+++|||++|+||||++++. . +++.+..-.. +|....|++. +.+.. + +....+ ...+|+
T Consensus 162 -~~~~p~~~g~HpYFnL~~~~~~~i~~~~L~i~a~~~~~-~d~~~iPtG~~~~v~~t~~Df~~~~~l~~~~~~~~~g~Dh 239 (337)
T PLN00194 162 -NKATPVNLAQHTYWNLAGHNSGDILSHKIQIFGSHITP-VDENLIPTGEILPVKGTPFDFTTPKKIGSRINELPKGYDH 239 (337)
T ss_pred -CCCeEEEccccceEEcCCCCCCCcCCeEEEEecCCEEE-eCCCcCcCCceeeCCCCCcccCCCcCcchhhccccCCcce
Confidence 9999999999999999741 1 6676542111 3432233331 11100 0 001111 136899
Q ss_pred EEeC-C------CCeEEE-cCCCCCeEEEEEcCCCcEEEeCCCCCC------CC--CCCcEEEEccCcc----c----c-
Q 021412 240 IYLD-A------PSVVHL-DNGLGDTITIRNTNWSDAVLWNPHMQM------EA--CYKDFVCVENAKI----G----K- 294 (312)
Q Consensus 240 ~y~~-~------~~~~~l-d~~~g~~l~v~~~~~~~~vvwtp~~~~------~~--~~~~fvCiEP~~~----~----~- 294 (312)
+|.- . ...++| ++.+|++++|.++ .|.+|||++.... +. ....+||||||.. + +
T Consensus 240 ~f~l~~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~v~vyT~n~~~~~~~~~~~~~~~~~~i~lEpq~~pda~n~~~~~~ 318 (337)
T PLN00194 240 NYVLDGEEKEGLKKAAKVKDPKSGRVLELWTN-APGMQFYTSNYVNGVKGKGGAVYGKHAGLCLETQGFPDAVNQPNFPS 318 (337)
T ss_pred EEEECCCCcccceeeEEEEcCCCCCEEEEEeC-CCEEEEECCCCCCCccCCCCCEeCCCCEEEEeccCCCCcccCCCCCC
Confidence 9962 1 225778 8888999999997 6999999976321 00 1246999999953 2 3
Q ss_pred eEECCCCEEEEEEEEEE
Q 021412 295 VQLEPEQSWTAKQHLSI 311 (312)
Q Consensus 295 ~~L~PGe~~~~~~~i~v 311 (312)
++|+|||.+...+.+++
T Consensus 319 ~~L~pge~~~~~t~y~f 335 (337)
T PLN00194 319 VVVNPGEKYKHTMLFEF 335 (337)
T ss_pred eEECCCCEEEEEEEEEE
Confidence 89999999999998875
No 14
>TIGR02636 galM_Leloir galactose mutarotase. Members of this protein family act as galactose mutarotase (D-galactose 1-epimerase) and participate in the Leloir pathway for galactose/glucose interconversion. All members of the seed alignment for this model are found in gene clusters with other enzymes of the Leloir pathway. This enzyme family belongs to the aldose 1-epimerase family, described by pfam model pfam01263. However, the enzyme described as aldose 1-epimerase itself (EC 5.1.3.3) is called broadly specific for D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. The restricted genome context for genes in this family suggests members should act primarily on D-galactose.
Probab=99.97 E-value=2.8e-29 Score=236.78 Aligned_cols=252 Identities=13% Similarity=0.153 Sum_probs=178.1
Q ss_pred CceEEEEEcCCccEEEEecCCeEEEEEEECC---CeeeeeeCC-CCccCCCCCcccCccEEccCCCC-------------
Q 021412 49 SLPKVVLTSAGGSEAELYLFGGCVTSWKASN---DKDLLFVRP-DAVFNWKKPISGGVPHCFPQFGP------------- 111 (312)
Q Consensus 49 ~~~~v~L~~~~g~~a~I~~~Gg~i~s~~~~~---g~evL~~~~-~~~~~~~~~irgG~p~lfP~~gr------------- 111 (312)
.+..++|+|.+|++|+|..+||.|.+|+.++ +++++...+ ...+....+..|. ++.|++||
T Consensus 3 ~v~~~~l~n~~g~~v~i~~~GA~i~~l~~pd~~~~~~vvlg~~~~~~y~~~~~~~Ga--~igp~anRI~~g~f~~~G~~y 80 (335)
T TIGR02636 3 PAQLITLTNNNGMTISFMDIGATWLSCQVPLAGELREVLLGFASMEEYYKQDAYLGA--TVGRYANRIANGSFEIDGETY 80 (335)
T ss_pred eeEEEEEECCCCcEEEEeCcCcEEEEEEeeCCCCccceEECCCCHHHHhhCCCccCC--CcCCCCceecCCEEEECCEEE
Confidence 4568899999889999999999999999732 356765444 2223323334443 47888887
Q ss_pred ------CCCCCceee---ecCCcEEEe-eecCCCCcEEEEEeecCccccccCCcceEEEEEEEEe-CCcEEEEEEEEeCC
Q 021412 112 ------GPMQQHGFA---RNMDWSILD-SENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILN-TKSISTELTITNTD 180 (312)
Q Consensus 112 ------g~~~~HG~~---r~~~W~v~~-~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~-~~~L~i~~~v~N~~ 180 (312)
+.+++||+. +.+.|+++. .+ ..+|+|++.+.+. ..+||++++++++|+|+ +++|+|+++++ +
T Consensus 81 ~L~~N~~~n~lHGg~~G~~~~~W~v~~~~~----~~~v~l~~~~~~~-~~gyPg~l~~~vtY~L~~~~~L~i~~~a~--~ 153 (335)
T TIGR02636 81 QLSINQGGNCLHGGPEGFDKRRWNIEELQE----EVQVKFSLESPDG-DQGFPGNLTVSVTYTLTDDNELTIEYEAT--T 153 (335)
T ss_pred EeccCCCCcccCCCCccccccEEeEeeecC----CCEEEEEEECCCc-CCCCCeEEEEEEEEEECCCCEEEEEEEEE--E
Confidence 156799998 778999976 44 5589999987654 48999999999999994 78999999998 8
Q ss_pred CCcEEEeeecccceeeccc------e---EEEecCCCCceecCCCCCCCC---CCC-----Ccc---Cc------eeccC
Q 021412 181 NKPFSFSSALHTYFRASVT------G---ASVKGLKGCKTLNKDPDPKNP---MEG-----KEE---RD------RVTFP 234 (312)
Q Consensus 181 ~~~~pf~~g~HpYF~~~~~------~---~~v~~~~~~~~~d~~~~~~~~---~~~-----~~~---~~------~~~~~ 234 (312)
++++||++|+||||++++. . +++.+..-.. +|....|++. +.+ ... .. .....
T Consensus 154 d~~tp~nlt~H~YFnL~g~~~~~~i~~~~L~i~a~~~~~-~d~~~iPtG~~~~v~~t~~Dfr~~~~l~~~~~~~~~~~~~ 232 (335)
T TIGR02636 154 DKATPFNLTNHVYFNLDGADAGSDVLSHELQLNADRYLP-LDEEGIPLGQLKPVDGTSFDFRKEKAIGQDFLANDQQQLA 232 (335)
T ss_pred CCceEEeccccceEEcCCCCCCCChhceEEEEECCcEEE-eCCCcCcCCceecCCCCccccCCCcCcCcccccccccccC
Confidence 9999999999999999752 1 6776543222 3432233331 111 100 00 01111
Q ss_pred CCcceEEeC-C-----CCeEEE-cCCCCCeEEEEEcCCCcEEEeCCCCCC------CC--CCCcEEEEccCcc-------
Q 021412 235 GFVDCIYLD-A-----PSVVHL-DNGLGDTITIRNTNWSDAVLWNPHMQM------EA--CYKDFVCVENAKI------- 292 (312)
Q Consensus 235 ~~~D~~y~~-~-----~~~~~l-d~~~g~~l~v~~~~~~~~vvwtp~~~~------~~--~~~~fvCiEP~~~------- 292 (312)
..+|++|.- . ...+.| ++.++++|+|.++ .|.+|||++..-. +. .....||||||.+
T Consensus 233 ~g~D~~f~l~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~~~vyT~~~~~~~~~~~g~~~~~~~gialE~q~~pd~~n~~ 311 (335)
T TIGR02636 233 KGYDHAFLLNGERLDGKPAAILTSPDEDLSLEVFTT-QPALQIYTGNFLAGTPNRGGKKYVDHAGLALETQFLPDSPNHP 311 (335)
T ss_pred CCcceEEEECCCCCCCceeEEEEcCCCCcEEEEecC-CCEEEEecCCCcCCccCCCCcEeCCCcEEEEecccCCCccccc
Confidence 268999962 2 124678 8889999999986 8999999985211 11 1246899999964
Q ss_pred c-c-e--EECCCCEEEEEEEEEE
Q 021412 293 G-K-V--QLEPEQSWTAKQHLSI 311 (312)
Q Consensus 293 ~-~-~--~L~PGe~~~~~~~i~v 311 (312)
+ + + +|+|||+++..+.|++
T Consensus 312 ~~~~~~~~L~pge~~~~~t~y~f 334 (335)
T TIGR02636 312 EWGDISCILSPGQEYQHQTRYQF 334 (335)
T ss_pred CCCCCceEECCCCEEEEEEEEEE
Confidence 1 2 3 5999999999999876
No 15
>PRK11055 galM galactose-1-epimerase; Provisional
Probab=99.97 E-value=4.9e-28 Score=228.45 Aligned_cols=253 Identities=14% Similarity=0.167 Sum_probs=176.4
Q ss_pred CCceEEEEEcCCccEEEEecCCeEEEEEEEC--CC--eeeeeeCCC-CccCCCCCcccCccEEccCCCC-----------
Q 021412 48 GSLPKVVLTSAGGSEAELYLFGGCVTSWKAS--ND--KDLLFVRPD-AVFNWKKPISGGVPHCFPQFGP----------- 111 (312)
Q Consensus 48 ~~~~~v~L~~~~g~~a~I~~~Gg~i~s~~~~--~g--~evL~~~~~-~~~~~~~~irgG~p~lfP~~gr----------- 111 (312)
..+..++|+|.+|++|+|..+||.|++|+.+ +| ++++...+. ..+....+..|. ++.|++||
T Consensus 7 ~~v~~~tl~n~~g~~v~i~~~GA~i~~l~vpd~~g~~~dvvlg~~~~~~y~~~~~~~Ga--~iGr~anRI~~g~f~~~G~ 84 (342)
T PRK11055 7 QPYRLLTLRNNAGMVVTLMDWGATWLSCRVPLSDGSVREVLLGCASPEDYPDQAAYLGA--SVGRYANRIANSRFTLDGE 84 (342)
T ss_pred CeEEEEEEECCCCeEEEEeCcCcEEEEEEeECCCCCEeeeEECCCCHHHHhhCCCccCc--eeCCcCCcccCCEEEECCE
Confidence 4567889999888999999999999999983 46 577644422 223323344443 58888887
Q ss_pred --------CCCCCceee---ecCCcEEEeeecCCCCcEEEEEeecCccccccCCcceEEEEEEEEeC-CcEEEEEEEEeC
Q 021412 112 --------GPMQQHGFA---RNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNT-KSISTELTITNT 179 (312)
Q Consensus 112 --------g~~~~HG~~---r~~~W~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~-~~L~i~~~v~N~ 179 (312)
+.+++||.. +.+.|++++.+ ..+|+|++.+.+. .++|||+++++++|+|++ ++|+|+++++
T Consensus 85 ~y~L~~N~~~n~lHGg~~G~~~~~W~v~~~~----~~~v~l~~~~~~g-~~GyPg~l~~~vtY~L~~~~~l~i~~~a~-- 157 (342)
T PRK11055 85 TYQLSPNQGGNQLHGGPEGFDKRRWQIVNQN----DRQVTFSLSSPDG-DQGFPGNLGATVTYRLTDDNRVSITYRAT-- 157 (342)
T ss_pred EEEcccCCCCcccCCCCcccCCcEEEEEEcc----CCEEEEEEECCCc-CCCCCeEEEEEEEEEEcCCCeEEEEEEEE--
Confidence 157799985 56789997765 5589999987644 379999999999999985 5888888886
Q ss_pred CCCcEEEeeecccceeeccc-------e--EEEecCCCCceecCCCCCCC---CCCC-----Ccc---Cce------ecc
Q 021412 180 DNKPFSFSSALHTYFRASVT-------G--ASVKGLKGCKTLNKDPDPKN---PMEG-----KEE---RDR------VTF 233 (312)
Q Consensus 180 ~~~~~pf~~g~HpYF~~~~~-------~--~~v~~~~~~~~~d~~~~~~~---~~~~-----~~~---~~~------~~~ 233 (312)
+++++||++|+||||++++. . +++++..-.. +|....|++ ++.+ .+. ... ...
T Consensus 158 ~d~~tp~nlt~H~YFnL~g~~~~~~i~~h~L~i~a~~~~~-~d~~~iPTG~~~~v~~t~~DFr~~~~l~~~~~~~~~~~~ 236 (342)
T PRK11055 158 VDKPCPVNLTNHAYFNLDGAEEGSDVRNHKLQINADEYLP-VDEGGIPNGGLKSVAGTSFDFRQPKTIAQDFLADDDQQK 236 (342)
T ss_pred cCCCeEEeccccceEECCCCCCCCCccceEEEEecCCEEE-ECcccCccCcEeccCCCcccccCCcCcCcccccchhccc
Confidence 79999999999999999751 1 6776542211 343333433 1211 110 010 001
Q ss_pred CCCcceEEeC-C----CC-eEEE-cCCCCCeEEEEEcCCCcEEEeCCCCC-----C-CCCC--CcEEEEccCcc------
Q 021412 234 PGFVDCIYLD-A----PS-VVHL-DNGLGDTITIRNTNWSDAVLWNPHMQ-----M-EACY--KDFVCVENAKI------ 292 (312)
Q Consensus 234 ~~~~D~~y~~-~----~~-~~~l-d~~~g~~l~v~~~~~~~~vvwtp~~~-----~-~~~~--~~fvCiEP~~~------ 292 (312)
...+|++|.- . .. .+.| ++.+|++|+|.++ .|.+||||+... + +..| ...||||||.+
T Consensus 237 ~~g~D~~fvl~~~~~~~~~~a~l~~~~sg~~l~v~t~-~p~lqvYT~n~~~~~~~~~g~~~~~~~gialE~q~~Pda~n~ 315 (342)
T PRK11055 237 VKGYDHAFLLQAKGDGKKPAAHLWSPDEKLQMKVYTT-APALQFYSGNFLAGTPSRGGGPYADYAGLALESQFLPDSPNH 315 (342)
T ss_pred CCCcceEEEECCCCcccceeEEEEcCCCCeEEEEEcC-CCEEEEecCCccCCccCCCCcEeCCCceEEEEcccCCCcccc
Confidence 1368999943 2 12 3677 8888999999986 899999997521 1 1112 35799999953
Q ss_pred ---c-c-eEECCCCEEEEEEEEEE
Q 021412 293 ---G-K-VQLEPEQSWTAKQHLSI 311 (312)
Q Consensus 293 ---~-~-~~L~PGe~~~~~~~i~v 311 (312)
. + ++|+|||+++..+.+++
T Consensus 316 ~~f~~~~~~L~pg~~y~~~t~y~f 339 (342)
T PRK11055 316 PEWPQPDCILKPGEEYRSLTEYQF 339 (342)
T ss_pred cCCCCCCeEECCCCEEEEEEEEEE
Confidence 2 3 79999999999988875
No 16
>PTZ00485 aldolase 1-epimerase; Provisional
Probab=99.94 E-value=9.1e-25 Score=207.43 Aligned_cols=263 Identities=11% Similarity=0.074 Sum_probs=178.5
Q ss_pred eeEEEecCCCceEEEEEcCCccEEEEecCCeEEEEEEE--CC-C--eeeeeeCC--CCccCCCCCcccCccEEccCCCC-
Q 021412 40 GVRVTEGEGSLPKVVLTSAGGSEAELYLFGGCVTSWKA--SN-D--KDLLFVRP--DAVFNWKKPISGGVPHCFPQFGP- 111 (312)
Q Consensus 40 ~~~~~~~~~~~~~v~L~~~~g~~a~I~~~Gg~i~s~~~--~~-g--~evL~~~~--~~~~~~~~~irgG~p~lfP~~gr- 111 (312)
|+++.. .+....++|+|.. ++++|..+||.|++++. ++ | ++++...+ ...+....+.. |. .+.|++||
T Consensus 4 ~~~~~~-~~~~~~~~L~N~~-~~v~i~n~GA~i~si~v~~~~~g~~~dvvLG~d~~~~~Y~~~~~y~-Ga-~iGr~AnRI 79 (376)
T PTZ00485 4 GIEVEP-YGYDKLVWLETDR-LKVGLTNYAASVASIQVYHPADNKWIEVNCGYPKNPEEAYADPDYM-GA-TVGRCAGRV 79 (376)
T ss_pred eeEEEe-cCCCcEEEEEeCC-EEEEEECcCcEEEEEEEEcCCCCcEEeEEECCCCCHHHHhhCCCcc-Cc-EeCCCCCeE
Confidence 444443 5677899999998 99999999999999998 23 5 57765443 23333333343 33 57888888
Q ss_pred --C----------------CCCCc----eeeecCCcEEEeeecCCCCcEEEEEeecCccccccCCcceEEEEEEEEe---
Q 021412 112 --G----------------PMQQH----GFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILN--- 166 (312)
Q Consensus 112 --g----------------~~~~H----G~~r~~~W~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~--- 166 (312)
| .+.+| ||- .+.|++...+ ..+..+|+|.+.+.+ ..++||++++++++|+|+
T Consensus 80 ~~G~f~ldG~~YqL~~Neg~n~LHGG~~gf~-~~~W~v~~~~-~~~~~~V~f~~~~~d-g~~GfPG~l~v~vtYtL~~~~ 156 (376)
T PTZ00485 80 AGGVFTLDGVKYYTQKNRGENTCHCGDDAYH-KKHWGMKLIE-TANVIGVRFNYTSPH-MENGFPGELVSKVTYSIERSK 156 (376)
T ss_pred ECCEEEECCEEEEccCCCCCcccCCCCCccc-eeeeeEEEec-cCCCcEEEEEEECCC-cCCCCCEEEEEEEEEEEecCC
Confidence 1 34555 455 5789986433 223458999998754 458999999999999996
Q ss_pred CCcEEEE---EEEEeCCCCcEEEeeecccceeecc-----------------ce---EEEecCCCCceecCCCCCCCC--
Q 021412 167 TKSISTE---LTITNTDNKPFSFSSALHTYFRASV-----------------TG---ASVKGLKGCKTLNKDPDPKNP-- 221 (312)
Q Consensus 167 ~~~L~i~---~~v~N~~~~~~pf~~g~HpYF~~~~-----------------~~---~~v~~~~~~~~~d~~~~~~~~-- 221 (312)
+++|+|+ ++++|++++++|+++++|+||++++ +. |++.+..-.. +|....|++.
T Consensus 157 ~~~L~i~y~a~~~~n~~d~~Tp~nltnH~YFNL~g~~~~~~~~~~~~~~~~~i~~h~L~i~a~~~l~-~de~~IPTG~i~ 235 (376)
T PTZ00485 157 PNVLKTIYDSYIPETSPADATPVNIFNHAYWNLNGIPERNGKKNAVWVQPESVRNHWLRVPASRVAE-ADRMAIPTGEFL 235 (376)
T ss_pred CCEEEEEEEEEeccccCCccceeeeccceeEEcCCCccccccccccccCCCcccceEEEEecCcEEE-eCcccCccCcee
Confidence 6899999 8889999999999999999999964 11 6666542111 3433334432
Q ss_pred -CC-----CCcc---Cceec----c---CCCcceEE-eCC--C---C-eEEE-cCCCCCeEEEEEcCCCcEEEeCCCCCC
Q 021412 222 -ME-----GKEE---RDRVT----F---PGFVDCIY-LDA--P---S-VVHL-DNGLGDTITIRNTNWSDAVLWNPHMQM 277 (312)
Q Consensus 222 -~~-----~~~~---~~~~~----~---~~~~D~~y-~~~--~---~-~~~l-d~~~g~~l~v~~~~~~~~vvwtp~~~~ 277 (312)
+. .... +..++ + ...+|++| ++. . . .+.| ++.+|++++|.++ .|.+|||+.....
T Consensus 236 ~v~~t~fDfr~~~~ig~~~~~~~~~~~~~~G~Dh~fvl~~~~~~~~~~~a~l~~p~sg~~l~v~T~-~P~~qiYT~n~l~ 314 (376)
T PTZ00485 236 SVEGTGLDFRQGRVIGDCIDDVALLDRDPCGYDHPLAIDGWEKGKLMLHAEAKSPVTNICMKVYST-FPCMWVYTANNKP 314 (376)
T ss_pred ccCCCCccCcCCcccchhhhhhhhhcccCCCCCcceEECCCCCccccEEEEEEcCCCCCEEEEEEC-CCEEEEECCCCCC
Confidence 11 1110 11111 1 13589998 432 1 1 3577 9999999999996 9999999975321
Q ss_pred -------CCCCC--cEEEEccCcc-----c----c-eEECCCCE-EEEEEEEEE
Q 021412 278 -------EACYK--DFVCVENAKI-----G----K-VQLEPEQS-WTAKQHLSI 311 (312)
Q Consensus 278 -------~~~~~--~fvCiEP~~~-----~----~-~~L~PGe~-~~~~~~i~v 311 (312)
+..|. ..||+|||.+ + . ++|+|||. ++..+.+++
T Consensus 315 ~~~~~~~g~~~~~~~giclE~Q~~PDa~n~~~~fp~~vl~pge~~~~~~t~y~f 368 (376)
T PTZ00485 315 LPASGGPGQRYARWTGMGLEPQYFPDVANHYPKYPSCIVRRGERRFTETILNEF 368 (376)
T ss_pred ccccCCCCcCcCCCCEEEEeccCCCCcccccCCCCCeEECCCCeEEEEEEEEEE
Confidence 11122 4699999964 2 2 89999999 777766653
No 17
>cd09023 Aldose_epim_Ec_c4013 Aldose 1-epimerase, similar to Escherichia coli c4013. Proteins, similar to Escherichia coli c4013, are uncharacterized members of aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.
Probab=99.88 E-value=1e-21 Score=181.42 Aligned_cols=233 Identities=16% Similarity=0.181 Sum_probs=152.9
Q ss_pred EEEe-cCCeEEEEEEECCCeeeeeeCCCCc-----cCCC-----CCcccCccEE--ccCCCC------CCCCCceeeecC
Q 021412 63 AELY-LFGGCVTSWKASNDKDLLFVRPDAV-----FNWK-----KPISGGVPHC--FPQFGP------GPMQQHGFARNM 123 (312)
Q Consensus 63 a~I~-~~Gg~i~s~~~~~g~evL~~~~~~~-----~~~~-----~~irgG~p~l--fP~~gr------g~~~~HG~~r~~ 123 (312)
++|. ..|..|.++.. +|.++.|.+.... +... -...||.-.- ++.+|. ..+++||++++.
T Consensus 2 ~~vlp~rg~dI~~~~~-~g~~l~w~s~~~~~~~~~~~~~~~~~~~~~~gg~~~~cGl~~~g~p~~~~~~~~~lHG~~~~~ 80 (284)
T cd09023 2 FEVLPDRGMDIGRASY-KGIPLGWLSPVGLVVPPYYESEGGGGWRSFFGGLLTTCGLDHIGHPEVDDGEEYPLHGRISNT 80 (284)
T ss_pred ceEcccCCcceeeeEE-CCEEeccCCCCCCCCCccccCCCchhHhhcCCEEEEeECccccCCCCcCCCccccCcccccCC
Confidence 5677 89999999987 5999999774321 1100 1123444333 455553 368999999999
Q ss_pred CcEEEeeecC-CCCcEEEEEeecCccccccCCcceEEEEEEEEeCCcEEEEEEEEeCCCCcEEEeeecccceeecc----
Q 021412 124 DWSILDSENV-EGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYFRASV---- 198 (312)
Q Consensus 124 ~W~v~~~~~~-~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~~~~---- 198 (312)
+|+++..+.+ ++...|+++.........+|||.++.+++|+|.++.|+++.+|+|.++++||+++++||||..+.
T Consensus 81 p~~~~~~~~~~~~~~~v~l~~~~~~~~~~g~~~~l~~~i~~~l~~~~l~i~~~VtN~g~~~~P~~~~~H~n~~~p~l~~~ 160 (284)
T cd09023 81 PAELVGVEEDEEGDYEIEVSGEVREAALFGENLRLERTIETDLGSNEIRLEDRVTNEGFRPTPHMLLYHVNFGYPLLDEG 160 (284)
T ss_pred CcceEEEEeccCCCeEEEEEEEEEEeeeecCceEEEEEEEEecCCceEEEEEEEEeCCCCCCcceEEeeEEcCCcccCCC
Confidence 9999987642 34445666665443334679999999999999999999999999999999999999999998752
Q ss_pred ceEEEecCCCCceecCC-CCCCCCCCCCccCceecc--CCCcceEEeC-----C--CCeEEE-cCCCCCeEEEEEc--CC
Q 021412 199 TGASVKGLKGCKTLNKD-PDPKNPMEGKEERDRVTF--PGFVDCIYLD-----A--PSVVHL-DNGLGDTITIRNT--NW 265 (312)
Q Consensus 199 ~~~~v~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~--~~~~D~~y~~-----~--~~~~~l-d~~~g~~l~v~~~--~~ 265 (312)
..+.++...... .|.. ......+. .+.- ....+.+|.. . ...+.| ++..+..++|..+ .|
T Consensus 161 ~~l~~p~~~~~p-~~~~~~~~~~~~~------~~~~p~~~~~e~v~~~~~~~d~~g~~~~~l~~~~~g~~~~l~~~~~~~ 233 (284)
T cd09023 161 ARLEIPSKEVTP-RDAHAAEGLASWN------TYLAPTPGFAEQVYFHEPAADEDGRAPAALVNPRLGLGVEVRFDTDTL 233 (284)
T ss_pred CEEEeccccccc-CChhhcccccccc------cccCCCCCCccEEEEEeccccCCCceeEEEEcCCCCcEEEEEEehhhC
Confidence 124444321111 1110 00000000 0000 1112333321 1 235777 7777878888887 59
Q ss_pred CcEEEeCCCCCCCCCCCcEEEEccCcc-----------cc-eEECCCCEEEEEE
Q 021412 266 SDAVLWNPHMQMEACYKDFVCVENAKI-----------GK-VQLEPEQSWTAKQ 307 (312)
Q Consensus 266 ~~~vvwtp~~~~~~~~~~fvCiEP~~~-----------~~-~~L~PGe~~~~~~ 307 (312)
|++++|+.... ....+||||++- ++ +.|+|||++++.+
T Consensus 234 p~~~~W~~~~~----~~y~lalEP~T~~p~~~~~~~~~g~l~~L~PGEs~~~~l 283 (284)
T cd09023 234 PYLTQWKNTGA----GAYVLGLEPATNFPNGRAFEREQGELPTLAPGESRSYRL 283 (284)
T ss_pred CHHHHHhccCC----CccEEEEccccCCCcchHHHHHCCCcceECCCCeEEEee
Confidence 99999997642 134677999951 13 9999999998764
No 18
>KOG1604 consensus Predicted mutarotase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=1.3e-19 Score=165.13 Aligned_cols=257 Identities=16% Similarity=0.245 Sum_probs=171.5
Q ss_pred EecCCCceEEEEEcCCccEEEEecCCeEEEEEEECC--C--eeeee-eCCCC-ccCCC------------CCcccCccEE
Q 021412 44 TEGEGSLPKVVLTSAGGSEAELYLFGGCVTSWKASN--D--KDLLF-VRPDA-VFNWK------------KPISGGVPHC 105 (312)
Q Consensus 44 ~~~~~~~~~v~L~~~~g~~a~I~~~Gg~i~s~~~~~--g--~evL~-~~~~~-~~~~~------------~~irgG~p~l 105 (312)
.+..+.+..++|.++.|++|+|..+||.|+|++.+| | .|+.. .++-+ |.... +||..|.
T Consensus 14 ~~~~~~~~~~tl~n~~~l~vti~~~GATi~sL~vpd~~gk~~DVVLGfd~v~gY~~~~~~yfGatvGRvANRI~~G~--- 90 (353)
T KOG1604|consen 14 TDQKQTIRVYTLGNGKGLQVTIINLGATITSLKVPDKSGKLDDVVLGFDDVDGYLKDDAAYFGATVGRVANRIAKGK--- 90 (353)
T ss_pred ccccCceEEEEecCCCeeEEEEeeCCcEEEEEEcCCcCCcccceEecccchhhhccCCcceecceehhhhhhcccce---
Confidence 445677889999999999999999999999999843 3 34543 22222 22222 3333332
Q ss_pred ccCCCC--------CCCCCceee---ecCCcEEEeeecCCCCcE-EEEEeecCccccccCCcceEEEEEEEEe-CCcEEE
Q 021412 106 FPQFGP--------GPMQQHGFA---RNMDWSILDSENVEGNPV-ITLELKDGPYSRAMWDFSFQALFKVILN-TKSIST 172 (312)
Q Consensus 106 fP~~gr--------g~~~~HG~~---r~~~W~v~~~~~~~~~~~-v~l~l~~~~~~~~~~P~~f~l~~~y~L~-~~~L~i 172 (312)
|-..|+ +++..||-. ....|+|.... .++ ++|...+ ++..++||++++++++|+|. +++|.+
T Consensus 91 F~ldgk~y~lt~N~g~n~lHgg~~gf~~~~w~v~~~~----~~~~i~f~~~s-~dg~eg~PG~l~V~vtYtLn~~n~l~i 165 (353)
T KOG1604|consen 91 FSLDGKPYKLTVNNGKNTLHGGIKGFDKVIWEVVKHQ----PDGVIVFSHLS-PDGDEGFPGDLKVTVTYTLNVANRLLI 165 (353)
T ss_pred EEECCceEEecccCCCccccCCcccccceEEEEEEec----CCCEEEEEEEC-CCCCCCCCccEEEEEEEEEccCCeeee
Confidence 222222 356677632 24679999876 333 5887776 55668999999999999999 599999
Q ss_pred EEEEEeCCCCcEEEeeecccceeeccce--------EEEecCCCCceecCCCCCCCCCCCC--------cc----Cceec
Q 021412 173 ELTITNTDNKPFSFSSALHTYFRASVTG--------ASVKGLKGCKTLNKDPDPKNPMEGK--------EE----RDRVT 232 (312)
Q Consensus 173 ~~~v~N~~~~~~pf~~g~HpYF~~~~~~--------~~v~~~~~~~~~d~~~~~~~~~~~~--------~~----~~~~~ 232 (312)
.+..+=. +++.|++++.|.||++.+.. +++.+.+-.+ .|....|++.+... .. ...-+
T Consensus 166 ~~~A~~~-~~~TPiNLtnHsYfNL~g~~s~~I~~heI~i~a~~~~e-vd~~~iPTG~I~~v~~t~fD~r~p~~lgd~~~~ 243 (353)
T KOG1604|consen 166 MMEATAL-DKATPINLTNHSYFNLAGHNSGGIEGHEIQIEASKITE-VDDTLIPTGEITPVKGTTFDFRKPTVLGDRIKQ 243 (353)
T ss_pred eehhhcc-CCCcceeeccceeEeccCCCCCCccceEEEEeecccEe-cCCccccccceEeccCccccccCCeeccccccc
Confidence 9988633 89999999999999997521 6676654333 35444455433211 00 01111
Q ss_pred cC--CCcceEE-eCCC-------CeEEE-cCCCCCeEEEEEcCCCcEEEeCCCCC------CCCCC--CcEEEEccCcc-
Q 021412 233 FP--GFVDCIY-LDAP-------SVVHL-DNGLGDTITIRNTNWSDAVLWNPHMQ------MEACY--KDFVCVENAKI- 292 (312)
Q Consensus 233 ~~--~~~D~~y-~~~~-------~~~~l-d~~~g~~l~v~~~~~~~~vvwtp~~~------~~~~~--~~fvCiEP~~~- 292 (312)
++ ...|..| ++.+ ..+.+ ++.+|+.++|.+. .|-+++|+..-- .+.-| ..++|+|++.+
T Consensus 244 ~~~i~g~d~n~~~~~~~~~~~l~~v~k~~hp~Sgr~lEv~Tn-qPgvqfYTgn~~~~~~gk~g~~y~k~g~~cletq~~p 322 (353)
T KOG1604|consen 244 FECIVGYDINYVLDGSVPPNKLRKVAKAVHPKSGRKLEVSTN-QPGVQFYTGNFLPDIKGKKGAVYPKHGGLCLETQYFP 322 (353)
T ss_pred cccccCCCcceEEccCCCCcccEEEEEEEcCccCcEEEEEeC-CCcEEEEeccccccccCCCceEeeccceEEeecccCc
Confidence 12 3456666 3321 24566 8999999999995 999999996211 11112 35899999864
Q ss_pred ---c----c-eEECCCCEEEEEEEEEE
Q 021412 293 ---G----K-VQLEPEQSWTAKQHLSI 311 (312)
Q Consensus 293 ---~----~-~~L~PGe~~~~~~~i~v 311 (312)
+ . ++|+|||++...+.++.
T Consensus 323 da~n~~~fp~v~l~pGE~Y~h~~~y~F 349 (353)
T KOG1604|consen 323 DAVNHPNFPSVILRPGETYTHETVYKF 349 (353)
T ss_pred cccccCCCCceEecCCCeeeeEEEEEE
Confidence 1 2 99999999999888764
No 19
>PF14486 DUF4432: Domain of unknown function (DUF4432); PDB: 3TY1_A.
Probab=99.54 E-value=3.6e-13 Score=125.33 Aligned_cols=251 Identities=15% Similarity=0.131 Sum_probs=137.7
Q ss_pred CCceEEEEEcCCccEEEEe-cCCeEEEEEEECCCeeeeeeCCCC-----ccC--CCCCcc---cC-ccEEc-cCCCC---
Q 021412 48 GSLPKVVLTSAGGSEAELY-LFGGCVTSWKASNDKDLLFVRPDA-----VFN--WKKPIS---GG-VPHCF-PQFGP--- 111 (312)
Q Consensus 48 ~~~~~v~L~~~~g~~a~I~-~~Gg~i~s~~~~~g~evL~~~~~~-----~~~--~~~~ir---gG-~p~lf-P~~gr--- 111 (312)
.|+..++|+|+.|++++|. ..|..|.+... +|.++-|.++.. ++. ....+. +| ...|= ..+|.
T Consensus 2 ~Gv~~l~i~N~~gl~~~vlp~rg~dI~~~~~-~G~~l~w~s~~~~~~P~~~~~~~g~~~l~~f~g~l~tcGl~~~G~P~~ 80 (302)
T PF14486_consen 2 RGVRALEIRNGGGLRFTVLPDRGMDIWDAEF-DGVNLGWHSPFGLVHPAYYDSPGGLGWLRTFGGFLFTCGLDNNGAPSE 80 (302)
T ss_dssp TT-EEEEEEETTS-EEEEETTTTTEEEEEEE-TTEEE----S-----GGG--HHHHTGGGGT---SEEEEEES--SS-EE
T ss_pred CCcEEEEEECCCCcEEEEecccCCceEEEEE-CCEEecccCCCcCCCCccccccCCcchhhcccchheeeccccCCCCCC
Confidence 5778999999778999999 99999999988 699998876542 111 000111 12 12221 23332
Q ss_pred --C-CCCCceeeecCCcEEEeeec-CCCCcEEEEEeecCccccccCCcceEEEEEEEEe--CCcEEEEEEEEeCCCCcEE
Q 021412 112 --G-PMQQHGFARNMDWSILDSEN-VEGNPVITLELKDGPYSRAMWDFSFQALFKVILN--TKSISTELTITNTDNKPFS 185 (312)
Q Consensus 112 --g-~~~~HG~~r~~~W~v~~~~~-~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~--~~~L~i~~~v~N~~~~~~p 185 (312)
| .+++||-+.+.||+.+..+. +++...+.++-.-.. ...|-.+++++-++++. .+.++|+.+|+|.+.+++|
T Consensus 81 ~~g~~~~LHG~i~~~Pa~~v~~~~~~~~~~~i~v~G~v~~--~~~fg~~l~l~r~i~~~~g~~~i~i~d~VtN~~~~p~p 158 (302)
T PF14486_consen 81 DDGETYPLHGRISNTPAEHVWLEIWDGDGYEIEVSGEVRE--AAGFGENLRLERTIRLRAGSNTIRIEDRVTNLGFQPMP 158 (302)
T ss_dssp ETTEEE-TTBSGGGS--SEEEEEEESSTT--EEEEEEEEE--EETTTEEEEEEEEEEE-TT-SEEEEEEEEEE-SSS-EE
T ss_pred cCCccccccccccCCCcceEEEEEecCCCcEEEEEEEEEE--EEeccCcEEEEEEEEEECCCcEEEEEEEEEECCCCCch
Confidence 1 48999999999998766553 223345555433222 14566677777777775 7899999999999999999
Q ss_pred Eeeecccceeeccc---e-EEEecCCCCceecCCCCCCCCCCCCccCceeccC--CCcceEEeC-----CCCe--EEE-c
Q 021412 186 FSSALHTYFRASVT---G-ASVKGLKGCKTLNKDPDPKNPMEGKEERDRVTFP--GFVDCIYLD-----APSV--VHL-D 251 (312)
Q Consensus 186 f~~g~HpYF~~~~~---~-~~v~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~D~~y~~-----~~~~--~~l-d 251 (312)
+.+.+|+-|..+-. . +..+..+-..+.+........+. .++-+ ..-+.||+. ..+. +.| +
T Consensus 159 ~m~lyH~N~G~pll~eg~ri~~p~~~~~~~~~~a~~~~~~~~------~~~~P~~~~~E~Vy~~~~~~d~~G~~~~~l~n 232 (302)
T PF14486_consen 159 LMYLYHMNFGYPLLDEGARIVAPTKEVTPRDDRAAEGIADWD------RMPAPQPGFPEQVYFHDLLADEDGWAHAALVN 232 (302)
T ss_dssp EEEEEEEEE-TTT-STT-EEE--EEEEEESSGGGGGGSTTTT------B---S-TT---EEEEEEE---TTSEEEEEEE-
T ss_pred hHHhhhhccCccccCCCcEEEcCcccccCCchhhhcCCccce------ecCCCCCCCCcEEEEecccccCCCcEEEEEEC
Confidence 99999999998732 2 33322211111111110000000 11111 123445532 1333 666 7
Q ss_pred CCCCCeEEEEEc--CCCcEEEeCCCCCCCCCCCcEEEEccCcc----------cc--eEECCCCEEEEEEEEEE
Q 021412 252 NGLGDTITIRNT--NWSDAVLWNPHMQMEACYKDFVCVENAKI----------GK--VQLEPEQSWTAKQHLSI 311 (312)
Q Consensus 252 ~~~g~~l~v~~~--~~~~~vvwtp~~~~~~~~~~fvCiEP~~~----------~~--~~L~PGe~~~~~~~i~v 311 (312)
+..+..+.|+++ .||++++|..... ..--++|||.+- .+ ..|+|||+.+.++.++|
T Consensus 233 ~~~g~g~~v~f~~~~lP~~~~Wk~~~~----~~yv~gLEP~T~~p~g~~~~~~~G~l~~L~pge~~~~~l~~~v 302 (302)
T PF14486_consen 233 PDGGLGFEVRFDTSQLPYLTQWKNYGG----GEYVLGLEPATCRPEGRAAAREAGTLPMLAPGESREFSLEFGV 302 (302)
T ss_dssp SSSS-EEEEEEETTTS-EEEEEEEES-----T-EEEEEEEESS-SS-HHHHHHTT--EEE-TT-EEEEEEEEE-
T ss_pred CCCCcEEEEEEchHHCChhHhheeCCC----CEeEEEEecccCCCCCHHHHHhCCCcceECCCCeEEEEEEecC
Confidence 877888988886 7999999987642 123579999952 23 99999999999999876
No 20
>cd09269 deoxyribose_mutarotase deoxyribose mutarotase_like. Salmonella enterica serovar Typhi DeoM (earlier named as DeoX) is a mutarotase with high specificity for deoxyribose. It is encoded by one of four genes beonging to the deoK operon. This operon has also been found in Escherichia coli where it is more common in pathogenic than in commensal strains and is associated with pathogenicity. It has been found on a pathogenicity island from a human blood isolate AL863 and confers the ability to use deoxyribose as a carbon source; deoxyribose is not fermented by non-pathogenic E.coli K-12. Proteins in this family are members of the aldose-1-epimerase superfamily. Aldose 1-epimerases, or mutarotases, are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechani
Probab=99.40 E-value=8.6e-12 Score=115.44 Aligned_cols=190 Identities=12% Similarity=0.079 Sum_probs=112.8
Q ss_pred CCCCceeeecCCcEEEeeec--CCCCcEEEEEeecCccccccCCcceEEEEEEEEeC--CcEEEEEEEEeCCCCcEEEee
Q 021412 113 PMQQHGFARNMDWSILDSEN--VEGNPVITLELKDGPYSRAMWDFSFQALFKVILNT--KSISTELTITNTDNKPFSFSS 188 (312)
Q Consensus 113 ~~~~HG~~r~~~W~v~~~~~--~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~--~~L~i~~~v~N~~~~~~pf~~ 188 (312)
.+++||-+...+|+..-... +++...++++-... ...+||++|+++.+|+|.. +.|+|+++|+|.++.|||+++
T Consensus 61 ~~~LHG~~~~~p~~~~w~~~~~d~~~~~l~l~g~~~--~~~~fg~~y~a~~~i~L~~g~~~l~i~~~VtN~g~~p~p~~~ 138 (293)
T cd09269 61 THPLHGEFPCAPMDEAWLEVGEDASGDYLALTGEYE--YVQGFGHHYLAQPSVTLRAGSALFDIGMDVTNLSAQPMPLMY 138 (293)
T ss_pred ccCCcCCcCCCCccceEEEEEecCCCCEEEEEEEEE--eeeccCccEEEEEEEEEeCCCCEEEEEEEEEECCCCCChhhE
Confidence 78999996666665552221 23344454444322 2368999999999999996 999999999999999999999
Q ss_pred ecccceeeccce-EEEecCC-CCceecCCC---CCCCCCCCC-----ccC---ceeccCCC--cceEEeC-C------CC
Q 021412 189 ALHTYFRASVTG-ASVKGLK-GCKTLNKDP---DPKNPMEGK-----EER---DRVTFPGF--VDCIYLD-A------PS 246 (312)
Q Consensus 189 g~HpYF~~~~~~-~~v~~~~-~~~~~d~~~---~~~~~~~~~-----~~~---~~~~~~~~--~D~~y~~-~------~~ 246 (312)
++||||...... +..+-+. .......++ .++..++.. .+. ..++-+.. -..||+. . ..
T Consensus 139 ~~H~nfg~~~garl~~p~~~~~~~~~~~~p~~v~p~~~w~~~~~~~~~~~~~~~~~~~P~~~~~E~V~~~~~~~~~~~~~ 218 (293)
T cd09269 139 MCHMNYAYVEGARIVQNLPDEAFVLRRSVPAHVKPTPAWLAYNEALVADPARGDVLDKPDLYDPEIVFFADDLGKYTGWA 218 (293)
T ss_pred ecccccCCCCCCEEEccCCcccceeeecccCccCCchhhccchHHHhhCchhhhhccCCCCCCccEEEEeecccccCCcE
Confidence 999999874322 3322210 111101111 111122110 010 01111111 2234432 1 13
Q ss_pred eEEE-cCCCCCeEEEEEc--CCCcEEEeCCCCCCCCCCCcEEEE-ccCcc----------cc--eEECCCCEEEEEEEE
Q 021412 247 VVHL-DNGLGDTITIRNT--NWSDAVLWNPHMQMEACYKDFVCV-ENAKI----------GK--VQLEPEQSWTAKQHL 309 (312)
Q Consensus 247 ~~~l-d~~~g~~l~v~~~--~~~~~vvwtp~~~~~~~~~~fvCi-EP~~~----------~~--~~L~PGe~~~~~~~i 309 (312)
.+.| ++. +..+.++++ .||++..|.-... + ..-..+ ||.+- .+ +.|+|||+.++.+.+
T Consensus 219 ~~~l~n~~-g~~~~~~f~~~~lP~~~~W~~~~~--~--~~v~~~~~PaT~~p~g~~~ar~~G~l~~L~pGe~~~f~l~~ 292 (293)
T cd09269 219 HFMMVHPD-GDAFYTRFSTAEFPYATRWILYNG--D--QQVAAFALPATCRPEGYLAAKEAGTLRTLAPGETRRFSVTT 292 (293)
T ss_pred EEEEECCC-CCEEEEEEchhhCChhheehhcCC--C--cceEEEEccCCCCcCChHHHHHCCCcceeCCCCeEEEEEec
Confidence 5667 666 447888876 8999999984321 0 223455 59852 13 999999999887653
No 21
>PF14315 DUF4380: Domain of unknown function (DUF4380)
Probab=97.96 E-value=0.00039 Score=64.01 Aligned_cols=124 Identities=17% Similarity=0.175 Sum_probs=80.6
Q ss_pred eEEEEEcCCccEEEEe-cCCeEEEEEEECCCeeeeeeCCC---Ccc---CCCCCcccCccEEc--cCCCCCC----CCCc
Q 021412 51 PKVVLTSAGGSEAELY-LFGGCVTSWKASNDKDLLFVRPD---AVF---NWKKPISGGVPHCF--PQFGPGP----MQQH 117 (312)
Q Consensus 51 ~~v~L~~~~g~~a~I~-~~Gg~i~s~~~~~g~evL~~~~~---~~~---~~~~~irgG~p~lf--P~~grg~----~~~H 117 (312)
..++|+|+. +++.|. +.||+|.++...+|.++|+.... ... .......||- -++ |+..... .+--
T Consensus 5 ~~~~l~N~~-i~l~Vtp~~GgRIl~~~~~g~~N~~~~~~~~~~~~~~~~~~~~~~~GGh-rlW~~Pe~~~r~~~~~~~Pd 82 (274)
T PF14315_consen 5 NCLRLSNGD-IELIVTPDVGGRILSFGLNGGENLFGEANEIQPAPGVSGDSGWINYGGH-RLWPSPENPPRTSKWVWPPD 82 (274)
T ss_pred eEEEEECCC-EEEEEecCCCCEEEEEEeCCCceEEeeccccccccccCCcccccCCCcc-eeecCCCCccccccccCCCc
Confidence 689999999 999999 99999999988667788843321 111 1122344553 344 3311001 1222
Q ss_pred eeeecCCcEEEeeecCCCCcEEEEEeecCccccccCCcceEEEEEEEEeCCc--EEEEEEEEeCCCCcEEEe
Q 021412 118 GFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTKS--ISTELTITNTDNKPFSFS 187 (312)
Q Consensus 118 G~~r~~~W~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~~--L~i~~~v~N~~~~~~pf~ 187 (312)
-+.-+.+|+++. . ...|+|+-..++.+ .++++.+++|.+++ ++++.+++|.++.+.+++
T Consensus 83 ~~ld~~p~~~~~-~----~~~v~L~s~~~~~t------giq~~~~i~l~~~~~~i~v~~~i~N~~~~~~~~a 143 (274)
T PF14315_consen 83 PVLDNGPYEVEI-D----DDGVRLTSPPSPKT------GIQKERTITLDADRPSIEVTHRITNIGDWPVEWA 143 (274)
T ss_pred ccccCCceeEEE-c----CCEEEEecCCCCcc------CcEEEEEEEECCCCCEEEEEEEEEeCCCCcceee
Confidence 244456777776 3 55676655433322 47899999999655 999999999999988744
No 22
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=95.68 E-value=0.31 Score=46.59 Aligned_cols=121 Identities=17% Similarity=0.190 Sum_probs=68.9
Q ss_pred ceEEEEEcCCccEEEEecCCeEEEEEEECCCeeeeeeCCCC--ccCCCCCcccCccEEcc-CCCC-C-CCCCce-eeecC
Q 021412 50 LPKVVLTSAGGSEAELYLFGGCVTSWKASNDKDLLFVRPDA--VFNWKKPISGGVPHCFP-QFGP-G-PMQQHG-FARNM 123 (312)
Q Consensus 50 ~~~v~L~~~~g~~a~I~~~Gg~i~s~~~~~g~evL~~~~~~--~~~~~~~irgG~p~lfP-~~gr-g-~~~~HG-~~r~~ 123 (312)
...++|+++. ++++|...||.|.++..++=++.+-..... -+... ....|+ ..|- + ..+.-. ...+.
T Consensus 73 ~~~i~v~td~-~~~~is~~Gg~i~~~~Lk~y~~~~~~~~~pv~L~~~~------~~~~y~~~~gl~~~~~~~~~~~~~~~ 145 (366)
T TIGR03593 73 AKRITVKTDV-LRASISTKGGDIDSLELKKYKETLDKDSPPVLLLSDG------AERLYVAQSGLIGANGADLALPGHRT 145 (366)
T ss_pred CCeEEEECCe-EEEEEeCCCceeeeeccccCccccCCCCCcEEeecCC------CCceeEEEeccccCCCCcccCCCCCc
Confidence 3578999999 999999999999999874211111100000 00000 011222 1111 0 101000 12345
Q ss_pred CcEEEeee--cCCCCcEEEEEeecCccccccCCcceEEEEEEEEeCC--cEEEEEEEEeCCCCcEE
Q 021412 124 DWSILDSE--NVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTK--SISTELTITNTDNKPFS 185 (312)
Q Consensus 124 ~W~v~~~~--~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~--~L~i~~~v~N~~~~~~p 185 (312)
.|++.... ..++...|+|++...+ ...++.+|+++++ .+.++++|+|.++.+..
T Consensus 146 ~~~~~~~~~~l~~~~~~v~l~~~~~~--------G~~v~k~ytf~~~sY~i~v~~~v~N~~~~~~~ 203 (366)
T TIGR03593 146 VWQAEGGEYTLTPGQLPVTLTWDNSN--------GVTVTKTYTFDRDSYLIDVEYKVTNNGDAPVS 203 (366)
T ss_pred eEEeCCCceeeCCCCEEEEEEEECCC--------CeEEEEEEEEeCCeEEEEeEEEEEeCCCCCee
Confidence 78876431 1223345777765432 3689999999966 78889999999987665
No 23
>PF09095 DUF1926: Domain of unknown function (DUF1926); InterPro: IPR015179 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents a domain found in prokaryotic alpha-amylase (3.2.1.1 from EC) and 4-alpha-glucanotransferase (2.4.1.25 from EC). This domain adopts a beta-sandwich fold, in which two layers of anti-parallel beta-sheets are arranged in a nearly parallel fashion. The exact function of this domain is, as yet, unknown, however it has been proposed that it may play a role in transglycosylation reactions []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1K1X_B 1K1W_A 1K1Y_A.
Probab=94.74 E-value=0.81 Score=42.25 Aligned_cols=133 Identities=16% Similarity=0.249 Sum_probs=69.4
Q ss_pred CCCceEEEEEcCCccEEEEe-cCCeEEEEEEEC-CCeeee---eeCCCCccCCC-----CCcccCc--------------
Q 021412 47 EGSLPKVVLTSAGGSEAELY-LFGGCVTSWKAS-NDKDLL---FVRPDAVFNWK-----KPISGGV-------------- 102 (312)
Q Consensus 47 ~~~~~~v~L~~~~g~~a~I~-~~Gg~i~s~~~~-~g~evL---~~~~~~~~~~~-----~~irgG~-------------- 102 (312)
..|.+.+.++++. +.+.|. ..||.|.+|... ...+++ -.+.+.|-... ..--.|+
T Consensus 4 ~Dg~~E~~~~~~~-~~~~~~~~~gg~~~E~d~~~~~~N~~~tl~r~~E~Yh~~~~~~~~~~~~~gi~siH~~~~~~~~~~ 82 (278)
T PF09095_consen 4 FDGREEVLLQNES-LNAYFKPAYGGSLFELDVKRSAHNLLDTLTRRPEAYHEKIAAQQEESEGEGIASIHDRVKFKDEEL 82 (278)
T ss_dssp SSSS-EEEEE-SS-EEEEEETTTTTEEEEEEETTTTEETT--------GGG--------------------------HHH
T ss_pred CCCcceEEEECCc-EEEEEeeCCCcEEEEEcccCccccccccccCCCccccchhccccccCCCCCccchhhcccccCccc
Confidence 4678899999999 999999 669999999873 344443 32333332221 0011111
Q ss_pred --cEEccCCCC-------------------CCCCCceeeecCCcEEEeeecCCCCcEEEEEeecCccccccCCcceEEEE
Q 021412 103 --PHCFPQFGP-------------------GPMQQHGFARNMDWSILDSENVEGNPVITLELKDGPYSRAMWDFSFQALF 161 (312)
Q Consensus 103 --p~lfP~~gr-------------------g~~~~HG~~r~~~W~v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~ 161 (312)
-+.+=|.-| +...-=|-.-+.+|++.... . .|+|+-... ..+.+..++-
T Consensus 83 ~~~l~yD~~~R~sf~Dhf~~~~~tle~~~~~~~~e~gDF~~~~y~~~~~~----~-~v~f~r~G~-----~~~~~~~l~K 152 (278)
T PF09095_consen 83 KEDLVYDWYPRRSFIDHFLPPDTTLEDFIQGSFRELGDFANQPYELEVNR----D-EVTFERDGG-----VEGHPITLEK 152 (278)
T ss_dssp HTT----SS---EEEEEEE-TT--HHHHHTTTS---BS-SSS--EEEEES----S-EEEEEEEEE-----ESEEEEEEEE
T ss_pred cccccCCCccCceeEEEecCCCCCHHHHhcCchhhhhhccCCceEEEecC----C-ceEEEEecc-----cccCceEEEE
Confidence 111112222 11122233336789887654 2 266654322 1567899999
Q ss_pred EEEEeCCcEEEEEEEEeCCCCcEEEeeecc
Q 021412 162 KVILNTKSISTELTITNTDNKPFSFSSALH 191 (312)
Q Consensus 162 ~y~L~~~~L~i~~~v~N~~~~~~pf~~g~H 191 (312)
+|+|.+++|.++|+++ .++.+.++-+|.=
T Consensus 153 ~y~l~~~~l~V~Y~l~-~~~~~~~~~f~vE 181 (278)
T PF09095_consen 153 RYRLTKNGLQVDYRLT-ESPEPISLLFGVE 181 (278)
T ss_dssp EEEEETTEEEEEEEEE--ESS---EEEEEE
T ss_pred EEEEcCCEEEEEEEEE-ECCCCcceEEEEE
Confidence 9999999999999999 6666665555443
No 24
>PF14849 YidC_periplas: YidC periplasmic domain; PDB: 3BS6_B 3BLC_B.
Probab=93.77 E-value=0.67 Score=42.10 Aligned_cols=117 Identities=15% Similarity=0.198 Sum_probs=58.1
Q ss_pred EEEEEcCCccEEEEecCCeEEEEEEECC--------Ceee-eeeCCCCccCCCCCcccCccEEccCCCCCCCCCceeeec
Q 021412 52 KVVLTSAGGSEAELYLFGGCVTSWKASN--------DKDL-LFVRPDAVFNWKKPISGGVPHCFPQFGPGPMQQHGFARN 122 (312)
Q Consensus 52 ~v~L~~~~g~~a~I~~~Gg~i~s~~~~~--------g~ev-L~~~~~~~~~~~~~irgG~p~lfP~~grg~~~~HG~~r~ 122 (312)
.++|+|+. .+++|...||.|.++..++ +.++ |...... .....+..+.++..|. . ..- .+
T Consensus 1 ~v~ven~~-~~~~~s~~GG~i~~~~Lk~y~~~~~~~~~pv~L~~~~~~-----~~~~~~~~l~~~~~~~-~--~~~--~~ 69 (270)
T PF14849_consen 1 RVTVENDL-FKVTFSSKGGRIKSVELKKYKNTLDPDSKPVELVDDSDE-----ENYPLAFGLVFNTGGA-Q--LPT--ND 69 (270)
T ss_dssp -EEEE-SS--EEEEETBTTEEEEEEEEEEESSTT-SS-EEEECEEETT-----EEEEEEEEEESTT--T-T--SGG--S-
T ss_pred CEEEECCC-EEEEEECCCCeEEEEEcCCCccccCCCCCceEEecCCCC-----cceEEEEcccccCccc-c--CCC--cc
Confidence 37899999 9999999999999998731 1111 1111000 0000112222222111 0 111 45
Q ss_pred CCcEEEeee----cCCCCcEEEEEeecCccccccCCcceEEEEEEEEeCC--cEEEEEEEEeCCCCcEEEe
Q 021412 123 MDWSILDSE----NVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTK--SISTELTITNTDNKPFSFS 187 (312)
Q Consensus 123 ~~W~v~~~~----~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~--~L~i~~~v~N~~~~~~pf~ 187 (312)
..|++...+ ..++...|+|+....+ .+.++.+|+|.++ .+.++++++|.++.+....
T Consensus 70 ~~f~~~~~~~~l~~~~~~~~vtf~~~~~~--------g~~i~k~ytf~~~~Y~~~~~i~~~n~~~~~~~~~ 132 (270)
T PF14849_consen 70 LYFSVSQKSYTLKEGGDSQSVTFTAQLGN--------GLTITKTYTFKPDSYLVDLEISVTNLSDQPVSLS 132 (270)
T ss_dssp -B-B-S-SEEE--TT-SEEEEEEEEE-TT--------S-EEEEEEEEETT--EEEEEEEEE--SSS-EEEE
T ss_pred ceEEEcCCceeeccCCCceEEEEEEECCC--------CEEEEEEEEEcCCcEEEEEEEEEECCCCCccccc
Confidence 678877632 0123556778776542 2689999999954 6777778889887776653
No 25
>PRK01318 membrane protein insertase; Provisional
Probab=92.35 E-value=3.9 Score=41.19 Aligned_cols=117 Identities=10% Similarity=0.110 Sum_probs=64.9
Q ss_pred EEEEEcCCccEEEEecCCeEEEEEEECC-----C--eeeeeeCCCCccCCCCCcccCccEEccCCCCCCCCCceeee-cC
Q 021412 52 KVVLTSAGGSEAELYLFGGCVTSWKASN-----D--KDLLFVRPDAVFNWKKPISGGVPHCFPQFGPGPMQQHGFAR-NM 123 (312)
Q Consensus 52 ~v~L~~~~g~~a~I~~~Gg~i~s~~~~~-----g--~evL~~~~~~~~~~~~~irgG~p~lfP~~grg~~~~HG~~r-~~ 123 (312)
.++|+++. ++++|...||.|.++..++ + .++--..+.. . ..-+.-+=+.|. ..+.+-... +.
T Consensus 40 ~i~v~td~-~~~~is~~Gg~i~~~~Lk~y~~~~~~~~p~~L~~~~~----~----~~y~~~~g~~~~-~~~~~~~~~~~~ 109 (521)
T PRK01318 40 RITVETDV-LRLSIDTKGGRIDDLLLKKYKETLDSSPPVVLLSPST----E----HPYFAQSGLTGA-DGPDNVPNPDRT 109 (521)
T ss_pred EEEEEcCc-EEEEEECCCCeeeeeeccCCccccCCCCCEEEecCCC----C----cceeeeeccccC-CCcccccCCCCc
Confidence 89999999 9999999999999998742 1 1121111100 0 000011111111 011110011 34
Q ss_pred CcEEEeeec----CCCCcEEEEEeecCccccccCCcceEEEEEEEEeCC--cEEEEEEEEeCCCCcEEE
Q 021412 124 DWSILDSEN----VEGNPVITLELKDGPYSRAMWDFSFQALFKVILNTK--SISTELTITNTDNKPFSF 186 (312)
Q Consensus 124 ~W~v~~~~~----~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~~--~L~i~~~v~N~~~~~~pf 186 (312)
.|+...... .++...|+|+....+ ...++.+|+++++ .++++++++|.++.++..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------g~~~~k~yt~~~~~Y~~~~~~~v~n~~~~~~~~ 170 (521)
T PRK01318 110 LYTADGDSLVLADGQNELPVTLTWTNGN--------GLTFTKTYTLDRGDYMFTVEYSVNNNSGAPVNL 170 (521)
T ss_pred ceeecccceeeccCCCceEEEEEEECCC--------CeEEEEEEEEcCCceEEEEEEEEEcCCCCceee
Confidence 677652211 123455777765432 3688999999865 488889999987765544
No 26
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin []. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=78.21 E-value=47 Score=29.19 Aligned_cols=123 Identities=17% Similarity=0.188 Sum_probs=67.1
Q ss_pred cceeEEEecCCCceEEEEEcCCccEEEEecCCeEEEEEEECCCee-eeeeCCCCccCCCCCcccCccEEccCCCCCCCCC
Q 021412 38 TLGVRVTEGEGSLPKVVLTSAGGSEAELYLFGGCVTSWKASNDKD-LLFVRPDAVFNWKKPISGGVPHCFPQFGPGPMQQ 116 (312)
Q Consensus 38 ~~~~~~~~~~~~~~~v~L~~~~g~~a~I~~~Gg~i~s~~~~~g~e-vL~~~~~~~~~~~~~irgG~p~lfP~~grg~~~~ 116 (312)
..+|.+... + ..++|.|+- .+++|..-||.|++++. +|.+ +|...+. ...||=+-+.|-..|. ....
T Consensus 6 ~~~V~L~~~--~-~~VvldNGi-VqVtls~p~G~VtgIkY-nGi~NLle~~n~------e~nrGYwD~~W~~~G~-~~~~ 73 (203)
T PF06045_consen 6 SSGVTLTVQ--G-RQVVLDNGI-VQVTLSKPGGIVTGIKY-NGIDNLLEVANK------ENNRGYWDLVWNEPGS-KGKF 73 (203)
T ss_pred CCCeEEEEc--C-CEEEEECCE-EEEEEcCCCceEEEEEE-CCEehhhcccCc------ccCCceEEEecccCCc-cccc
Confidence 456666663 2 348999998 99999999999999998 6764 4432211 1112212222222222 1101
Q ss_pred ceeeecCCcEEEeeecCCCCcEEEEEeec--Ccc-ccccCCcceEEEEEEEEe--CCcEEEEEEEEeC
Q 021412 117 HGFARNMDWSILDSENVEGNPVITLELKD--GPY-SRAMWDFSFQALFKVILN--TKSISTELTITNT 179 (312)
Q Consensus 117 HG~~r~~~W~v~~~~~~~~~~~v~l~l~~--~~~-~~~~~P~~f~l~~~y~L~--~~~L~i~~~v~N~ 179 (312)
-. .....++|+..+ +..|.+.+.. ++. ....- ++.++.+|.|. ..++=+-...+|.
T Consensus 74 ~~-~~gt~f~Vi~~t----e~qVevSF~r~w~~s~~~~~~--plnIDkryVm~rG~SGfY~YAI~e~~ 134 (203)
T PF06045_consen 74 DR-IKGTEFSVIEQT----EEQVEVSFSRTWDPSLDGKSV--PLNIDKRYVMLRGSSGFYSYAIFEHP 134 (203)
T ss_pred cc-cCCcEEEEEEcC----CCeEEEEEEcccCcCCCCCcc--eeEeeEEEEEecCCceEEEEEEEecC
Confidence 11 123568888775 5566666641 111 11223 46677777775 3455555555553
No 27
>COG0832 UreB Urea amidohydrolase (urease) beta subunit [Amino acid transport and metabolism]
Probab=77.65 E-value=3.3 Score=31.92 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=24.7
Q ss_pred EEEEEeCCcEEEEEEEEeCCCCcEEEeeecc
Q 021412 161 FKVILNTKSISTELTITNTDNKPFSFSSALH 191 (312)
Q Consensus 161 ~~y~L~~~~L~i~~~v~N~~~~~~pf~~g~H 191 (312)
=.++|+.+..+++++|.|+||+|.-++.-+|
T Consensus 11 g~IelN~gr~~~~i~V~NtGDRPIQVGSHfH 41 (106)
T COG0832 11 GDIELNAGRPTVTIEVANTGDRPIQVGSHFH 41 (106)
T ss_pred ccEEEeCCCcceEEEEeecCCCceEeeccee
Confidence 3567888899999999999999876655444
No 28
>PRK13203 ureB urease subunit beta; Reviewed
Probab=67.54 E-value=8 Score=29.99 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=22.5
Q ss_pred EEEeCCcEEEEEEEEeCCCCcEEEeeecc
Q 021412 163 VILNTKSISTELTITNTDNKPFSFSSALH 191 (312)
Q Consensus 163 y~L~~~~L~i~~~v~N~~~~~~pf~~g~H 191 (312)
+.|..+.=.++++|+|++|+|.-++.=+|
T Consensus 13 I~ln~gr~~~~l~V~NtGDRPIQVGSH~H 41 (102)
T PRK13203 13 IELNAGRETVTLTVANTGDRPIQVGSHYH 41 (102)
T ss_pred EEeCCCCCEEEEEEEeCCCCceEEccccc
Confidence 56777778899999999999776654444
No 29
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=67.20 E-value=6.6 Score=30.33 Aligned_cols=31 Identities=29% Similarity=0.406 Sum_probs=21.5
Q ss_pred EEEeCCcEEEEEEEEeCCCCcEEEeeeccccee
Q 021412 163 VILNTKSISTELTITNTDNKPFSFSSALHTYFR 195 (312)
Q Consensus 163 y~L~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~ 195 (312)
+.|..+.=+++++|+|+||+|.-+ |-|-+|.
T Consensus 12 I~lN~gr~~~~l~V~N~GDRPIQV--GSH~HF~ 42 (100)
T PF00699_consen 12 IELNAGRERITLEVTNTGDRPIQV--GSHYHFF 42 (100)
T ss_dssp EETTTTSEEEEEEEEE-SSS-EEE--ETTS-GG
T ss_pred EEecCCCcEEEEEEEeCCCcceEE--ccccCHH
Confidence 566778889999999999997655 5555553
No 30
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=67.19 E-value=8.3 Score=29.85 Aligned_cols=30 Identities=20% Similarity=0.440 Sum_probs=23.3
Q ss_pred EEEeCCcEEEEEEEEeCCCCcEEEeeecccce
Q 021412 163 VILNTKSISTELTITNTDNKPFSFSSALHTYF 194 (312)
Q Consensus 163 y~L~~~~L~i~~~v~N~~~~~~pf~~g~HpYF 194 (312)
+.|..+.=.++++|+|++|+|.-++ -|-+|
T Consensus 13 I~ln~gr~~~~l~V~NtGDRPIQVG--SHyHF 42 (101)
T TIGR00192 13 ITINEGRKTVSVKVKNTGDRPIQVG--SHFHF 42 (101)
T ss_pred EEeCCCCcEEEEEEEeCCCcceEEc--cccch
Confidence 5677778899999999999976655 45555
No 31
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=67.16 E-value=8 Score=29.95 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=24.1
Q ss_pred EEEEeCCcEEEEEEEEeCCCCcEEEeeeccccee
Q 021412 162 KVILNTKSISTELTITNTDNKPFSFSSALHTYFR 195 (312)
Q Consensus 162 ~y~L~~~~L~i~~~v~N~~~~~~pf~~g~HpYF~ 195 (312)
.+.|..+.=.++++|+|++|+|.-++ -|-+|-
T Consensus 12 ~I~lN~gr~~~~l~V~NtGDRpIQVG--SH~HF~ 43 (101)
T cd00407 12 DIELNAGREAVTLKVKNTGDRPIQVG--SHYHFF 43 (101)
T ss_pred CeEeCCCCCEEEEEEEeCCCcceEEc--cccchh
Confidence 35677778899999999999976655 455553
No 32
>PRK13202 ureB urease subunit beta; Reviewed
Probab=60.87 E-value=13 Score=28.89 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=25.8
Q ss_pred EEEeCCc-EEEEEEEEeCCCCcEEEeeecccceeeccceEEEe
Q 021412 163 VILNTKS-ISTELTITNTDNKPFSFSSALHTYFRASVTGASVK 204 (312)
Q Consensus 163 y~L~~~~-L~i~~~v~N~~~~~~pf~~g~HpYF~~~~~~~~v~ 204 (312)
+.|..+. =+++++|+|++|+|.-++ -|-+|-=.+..|.++
T Consensus 13 I~ln~grr~~~~l~V~NtGDRPIQVG--SHyHF~E~N~aL~FD 53 (104)
T PRK13202 13 IEMNAAALSRLQMRIINAGDRPVQVG--SHVHLPQANRALSFD 53 (104)
T ss_pred EEeCCCCCceEEEEEEeCCCCceEEc--cccchhhcCcceeec
Confidence 5677664 689999999999976655 455553222225444
No 33
>PRK13201 ureB urease subunit beta; Reviewed
Probab=59.51 E-value=13 Score=30.26 Aligned_cols=29 Identities=28% Similarity=0.485 Sum_probs=22.7
Q ss_pred EEEeCCcEEEEEEEEeCCCCcEEEeeecc
Q 021412 163 VILNTKSISTELTITNTDNKPFSFSSALH 191 (312)
Q Consensus 163 y~L~~~~L~i~~~v~N~~~~~~pf~~g~H 191 (312)
+.|..+.=+++++|+|++|+|.-++.=+|
T Consensus 13 I~lN~gr~~~~l~V~NtGDRPIQVGSHyH 41 (136)
T PRK13201 13 VEINNHHPETVIEVENTGDRPIQVGSHFH 41 (136)
T ss_pred eEeCCCCCEEEEEEEeCCCcceEeccccc
Confidence 56777788899999999999776655444
No 34
>PRK13205 ureB urease subunit beta; Reviewed
Probab=59.14 E-value=13 Score=30.97 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=23.4
Q ss_pred EEEeCCcEEEEEEEEeCCCCcEEEeeecccce
Q 021412 163 VILNTKSISTELTITNTDNKPFSFSSALHTYF 194 (312)
Q Consensus 163 y~L~~~~L~i~~~v~N~~~~~~pf~~g~HpYF 194 (312)
+.|..+.=.++++|+|++|.|+-++. |-+|
T Consensus 13 IelN~GR~~i~L~V~NtGDRPIQVGS--HyHF 42 (162)
T PRK13205 13 LTGNVGREAKTIEIINTGDRPVQIGS--HFHF 42 (162)
T ss_pred eEeCCCCcEEEEEEEeCCCCceEecc--ccch
Confidence 56777888999999999999776654 5545
No 35
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=58.86 E-value=31 Score=25.69 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=28.3
Q ss_pred CcceEEEEEEEEeCCcEEEEEEEEeCCCCcEEEeeecccce
Q 021412 154 DFSFQALFKVILNTKSISTELTITNTDNKPFSFSSALHTYF 194 (312)
Q Consensus 154 P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~pf~~g~HpYF 194 (312)
|+.++++.+|.- ..-.+.+++.|.|.++..|.+--+.|-
T Consensus 6 ~~~~~v~~~~~~--~~g~l~l~l~N~g~~~~~~~v~~~~y~ 44 (89)
T PF05506_consen 6 PYAPEVTARYDP--ATGNLRLTLSNPGSAAVTFTVYDNAYG 44 (89)
T ss_pred CCCCEEEEEEEC--CCCEEEEEEEeCCCCcEEEEEEeCCcC
Confidence 555556555544 333788888999999999998887773
No 36
>PRK13204 ureB urease subunit beta; Reviewed
Probab=57.88 E-value=14 Score=30.81 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=27.3
Q ss_pred cCCcceEEE-EEEEEeCCcEEEEEEEEeCCCCcEEEeeecc
Q 021412 152 MWDFSFQAL-FKVILNTKSISTELTITNTDNKPFSFSSALH 191 (312)
Q Consensus 152 ~~P~~f~l~-~~y~L~~~~L~i~~~v~N~~~~~~pf~~g~H 191 (312)
.-|..+.+. -.+.|..+.=.++++|+|+||+|+-++.=+|
T Consensus 24 ~~pGei~~~~~~I~lN~gr~~~~l~V~NtGDRPIQVGSHyH 64 (159)
T PRK13204 24 RPVGGYVLAKDPIEINQGRPRTTLTVRNTGDRPIQIGSHFH 64 (159)
T ss_pred CCCCeEEeCCCCeEeCCCCcEEEEEEEeCCCCceEeccccc
Confidence 345443322 2467888888999999999999776655444
No 37
>PRK13198 ureB urease subunit beta; Reviewed
Probab=57.81 E-value=14 Score=30.78 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=27.7
Q ss_pred cCCcceEE-EEEEEEeCCcEEEEEEEEeCCCCcEEEeeecc
Q 021412 152 MWDFSFQA-LFKVILNTKSISTELTITNTDNKPFSFSSALH 191 (312)
Q Consensus 152 ~~P~~f~l-~~~y~L~~~~L~i~~~v~N~~~~~~pf~~g~H 191 (312)
.-|..+.+ .-.+.|..+.=.++++|+|+||+|.=++.=+|
T Consensus 29 ~~pGei~~~~g~I~lN~gr~~~~l~V~NtGDRPIQVGSHyH 69 (158)
T PRK13198 29 TPLGGLVLAETPITFNENKPVTKVKVRNTGDRPIQVGSHFH 69 (158)
T ss_pred CCCceEEeCCCCeEeCCCCcEEEEEEEeCCCCceEeccccc
Confidence 34554432 23467888888999999999999776655444
No 38
>PF02929 Bgal_small_N: Beta galactosidase small chain; InterPro: IPR004199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Beta-galactosidase enzymes (3.2.1.23 from EC) belong to several glycoside hydrolase families: GH1 from CAZY, GH2 from CAZY, GH35 from CAZY and GH42 from CAZY. Beta-galactosidase is the product of the lac operon Z gene of Escherichia coli. This enzyme catalyses the hydrolysis of the disaccharide lactose to galactose and glucose, and can also convert lactose to allolactose, the inducer of the lac operon. This domain is found in single chain beta-galactosidases, which are comprised of five domains. The active site is located in a deep pocket built around the central alpha-beta barrel, with the other domains conferring specificity for a disaccharide substrate. This entry represents domain 5 of glycoside hydrolase family 2, which contains an N-terminal loop that swings towards the active site upon the deep binding of a ligand to produce a closed conformation []. This domain is also found in the amino-terminal portion of the small chain of dimeric beta-galactosidases.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1JZ3_D 1JYY_H 1GHO_P 3VD9_B 3I3E_B 3T0B_A 3T09_C 1F4A_D 3VDC_C 3VDB_D ....
Probab=57.40 E-value=76 Score=29.06 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=57.3
Q ss_pred EEEcCCccEEEEecCCeEEEEEEECCCeeeeeeCCC-CccCCC--CCcccCccE-EccCCCCCCCCCceee-ecCCcEEE
Q 021412 54 VLTSAGGSEAELYLFGGCVTSWKASNDKDLLFVRPD-AVFNWK--KPISGGVPH-CFPQFGPGPMQQHGFA-RNMDWSIL 128 (312)
Q Consensus 54 ~L~~~~g~~a~I~~~Gg~i~s~~~~~g~evL~~~~~-~~~~~~--~~irgG~p~-lfP~~grg~~~~HG~~-r~~~W~v~ 128 (312)
+|+.++ .++.+...-|.|.||+. +|+++|..... ..|... +-..++.+. +-.|- ....+=.. +...+++.
T Consensus 1 tV~g~~-f~~~Fdk~~G~l~s~~~-~g~~ll~~~~~~nfwRApTDND~~~~~~~~~~~W~---~ag~~~~~~~~~~~~~~ 75 (276)
T PF02929_consen 1 TVSGKD-FSYVFDKKTGTLTSYKY-NGKELLKRGPKPNFWRAPTDNDRGIGNPSRAARWK---DAGLDRLVTRVRSVKVE 75 (276)
T ss_dssp -EEETT-EEEEEETTTTCEEEEEE-TTEEEECEEEEEE---S--TCCCTTTTSHSCHHHH---HTTTTCEEEEEEEEEEE
T ss_pred CCccCC-EEEEEECCCCeEEEEEE-CCEEeecCCCcccEEeCCCCCccccccchhHHHHH---HcCccceeeEEeEEEEE
Confidence 467776 89999977779999997 78999864321 222221 000000000 00010 01111111 11124444
Q ss_pred eeecCCCCcEEEEEeecCccccccCCcceEEEEEEEEeC-CcEEEEEEEEeCCC
Q 021412 129 DSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILNT-KSISTELTITNTDN 181 (312)
Q Consensus 129 ~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~~-~~L~i~~~v~N~~~ 181 (312)
+.. ++..|++........ =+..+.++++|++.+ +.++|+++++=.++
T Consensus 76 ~~~---~~~~v~v~~~~~~~~---~~~~~~~~~~y~i~~dG~i~v~~~~~~~~~ 123 (276)
T PF02929_consen 76 ESD---GDVAVTVTARYAAPN---KSWNFEVTITYTIYADGTIKVDMTFEPSGD 123 (276)
T ss_dssp EEE---SESEEEEEEEEEETT---CCEEEEEEEEEEEETTSEEEEEEEEEEETT
T ss_pred ecC---CCceEEEEEEEeCCC---cceEEEEEEEEEEcCCCEEEEEEEEEeCCC
Confidence 332 233344443322211 112389999999995 57888888874444
No 39
>PRK05089 cytochrome C oxidase assembly protein; Provisional
Probab=50.20 E-value=81 Score=27.39 Aligned_cols=51 Identities=12% Similarity=0.099 Sum_probs=37.1
Q ss_pred CcEEEEEeecCccccccCCcceEEEEEE-EEe-CCcEEEEEEEEeCCCCcEEEee
Q 021412 136 NPVITLELKDGPYSRAMWDFSFQALFKV-ILN-TKSISTELTITNTDNKPFSFSS 188 (312)
Q Consensus 136 ~~~v~l~l~~~~~~~~~~P~~f~l~~~y-~L~-~~~L~i~~~v~N~~~~~~pf~~ 188 (312)
+..|+++++.+-. .+-||.|+-+.+. ++. |..-.+.+.++|.+++++.--.
T Consensus 62 ~R~I~V~F~a~~~--~~lpW~F~P~q~~v~V~pGE~~~~~y~a~N~sd~~i~g~A 114 (188)
T PRK05089 62 SRTITVEFDANVN--GGLPWEFKPEQRSVDVHPGELNLVFYEAENLSDRPIVGQA 114 (188)
T ss_pred CcEEEEEEeccCC--CCCCceEEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEE
Confidence 4567888866543 5678888766554 555 6777889999999999986443
No 40
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=45.35 E-value=25 Score=30.77 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=27.5
Q ss_pred CCcceEE-EEEEEEeCCcEEEEEEEEeCCCCcEEEeeecccce
Q 021412 153 WDFSFQA-LFKVILNTKSISTELTITNTDNKPFSFSSALHTYF 194 (312)
Q Consensus 153 ~P~~f~l-~~~y~L~~~~L~i~~~v~N~~~~~~pf~~g~HpYF 194 (312)
+|..+.. .-.+.|+.+.=.++++|+|+||+|.-++. |-+|
T Consensus 111 ~PGei~~~~~~I~lN~gr~~~~l~V~NtGDRPIQVGS--HyHF 151 (208)
T PRK13192 111 YPGEILPGDGEIELNAGRPAVTLDVTNTGDRPIQVGS--HFHF 151 (208)
T ss_pred CCCEEEcCCCCeeeCCCCCEEEEEEEeCCCCceeecc--ccch
Confidence 4554432 12367787888999999999999776554 5445
No 41
>PRK13986 urease subunit alpha; Provisional
Probab=41.61 E-value=29 Score=30.72 Aligned_cols=31 Identities=19% Similarity=0.447 Sum_probs=24.0
Q ss_pred EEEEeCCcEEEEEEEEeCCCCcEEEeeecccce
Q 021412 162 KVILNTKSISTELTITNTDNKPFSFSSALHTYF 194 (312)
Q Consensus 162 ~y~L~~~~L~i~~~v~N~~~~~~pf~~g~HpYF 194 (312)
.+.|+.+.=.++++|+|+||+|.=++. |-+|
T Consensus 117 ~I~lN~gr~~~~l~V~NtGDRPIQVGS--HyHF 147 (225)
T PRK13986 117 DITINAGKKAVSVKVKNVGDRPVQVGS--HFHF 147 (225)
T ss_pred CeecCCCCcEEEEEEEeCCCCceeecc--ccch
Confidence 357787888999999999999776654 5445
No 42
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=40.36 E-value=36 Score=32.57 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=23.4
Q ss_pred EEEEEeCCcEEEEEEEEeCCCCcEEEe
Q 021412 161 FKVILNTKSISTELTITNTDNKPFSFS 187 (312)
Q Consensus 161 ~~y~L~~~~L~i~~~v~N~~~~~~pf~ 187 (312)
-+|.+-+.+|+++++|+|.++++..++
T Consensus 275 a~Y~VPGR~l~~~~~VTN~g~~~vrlg 301 (399)
T TIGR03079 275 ANYDVPGRALRVTMEITNNGDQVISIG 301 (399)
T ss_pred cEEecCCcEEEEEEEEEcCCCCceEEE
Confidence 367888899999999999999998765
No 43
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=40.12 E-value=42 Score=24.88 Aligned_cols=21 Identities=24% Similarity=0.483 Sum_probs=15.1
Q ss_pred cEEEEEEEEeCCCCcEEEeee
Q 021412 169 SISTELTITNTDNKPFSFSSA 189 (312)
Q Consensus 169 ~L~i~~~v~N~~~~~~pf~~g 189 (312)
++.+.++|+|.++++..+.+.
T Consensus 1 ~v~~~l~v~N~s~~~v~l~f~ 21 (82)
T PF12690_consen 1 QVEFTLTVTNNSDEPVTLQFP 21 (82)
T ss_dssp -EEEEEEEEE-SSS-EEEEES
T ss_pred CEEEEEEEEeCCCCeEEEEeC
Confidence 478999999999998887653
No 44
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=37.38 E-value=40 Score=32.32 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=23.9
Q ss_pred EEEEEEeCCcEEEEEEEEeCCCCcEEEee
Q 021412 160 LFKVILNTKSISTELTITNTDNKPFSFSS 188 (312)
Q Consensus 160 ~~~y~L~~~~L~i~~~v~N~~~~~~pf~~ 188 (312)
..+|++-+.+|+++++|+|.+++|..++-
T Consensus 255 ~A~Y~vpgR~l~~~l~VtN~g~~pv~Lge 283 (381)
T PF04744_consen 255 DATYRVPGRTLTMTLTVTNNGDSPVRLGE 283 (381)
T ss_dssp EEEEESSSSEEEEEEEEEEESSS-BEEEE
T ss_pred ccEEecCCcEEEEEEEEEcCCCCceEeee
Confidence 45778889999999999999999887653
No 45
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=34.46 E-value=5.2e+02 Score=28.56 Aligned_cols=116 Identities=15% Similarity=0.175 Sum_probs=59.1
Q ss_pred eEEEEEcCCccEEEEecCCeEEEEEEECCCeeeeeeCCC-CccCCCCCcccCccEE---ccCCCCCCCCCceeeecCCcE
Q 021412 51 PKVVLTSAGGSEAELYLFGGCVTSWKASNDKDLLFVRPD-AVFNWKKPISGGVPHC---FPQFGPGPMQQHGFARNMDWS 126 (312)
Q Consensus 51 ~~v~L~~~~g~~a~I~~~Gg~i~s~~~~~g~evL~~~~~-~~~~~~~~irgG~p~l---fP~~grg~~~~HG~~r~~~W~ 126 (312)
..++|+.++ .++++...=|.|+||+. +|+++|..... ..|... .-.-.+.. |--. |-..++--+ ..|+
T Consensus 724 ~~~~i~~~~-~~~~fdk~tG~l~s~~~-~g~~ll~~~~~~nfwRAp--tDND~~~~~~~W~~a--g~~~l~~~~--~~~~ 795 (1021)
T PRK10340 724 LSCTVRGYN-FAITFSKVSGKLTSWQV-NGESLLTREPKINFFKPM--IDNHKQEYEGLWQPN--HLQIMQEHL--RDFA 795 (1021)
T ss_pred CEEEEEeCC-EEEEEECCcceEEEEEe-CCeeeecCCCccceEeCC--ccCCcchhhHHHHHc--CCccceeEE--EEEE
Confidence 456677776 88888877789999987 78999865422 223221 00000000 0000 111111111 2344
Q ss_pred EEeeecCCCCcEEEEEeecCccccccCCcceEEEEEEEEe-CCcEEEEEEEEeCC
Q 021412 127 ILDSENVEGNPVITLELKDGPYSRAMWDFSFQALFKVILN-TKSISTELTITNTD 180 (312)
Q Consensus 127 v~~~~~~~~~~~v~l~l~~~~~~~~~~P~~f~l~~~y~L~-~~~L~i~~~v~N~~ 180 (312)
+... ++...|+.++...+.. .. +.+.++++|++. ++.+.+++++.-.+
T Consensus 796 ~~~~---~~~v~v~~~~~~~~~~-~~--~~~~~~~~y~i~~~G~i~v~~~~~~~~ 844 (1021)
T PRK10340 796 VEQS---DGEVLIISRTVIAPPV-FD--FGMRCTYIYRIAADGQVNVALSGERYG 844 (1021)
T ss_pred EEeC---CCeEEEEEEEEecCCc-cc--ceeEEEEEEEEcCCCEEEEEEEEEECC
Confidence 3332 2233334444333211 11 236889999998 56788888886433
No 46
>PF04442 CtaG_Cox11: Cytochrome c oxidase assembly protein CtaG/Cox11; InterPro: IPR007533 Cytochrome c oxidase assembly protein is essential for the assembly of functional cytochrome oxidase protein. In eukaryotes it is an integral protein of the mitochondrial inner membrane. Cox11 is essential for the insertion of Cu(I) ions to form the CuB site. This is essential for the stability of other structures in subunit I, for example haems a and a3, and the magnesium/manganese centre. Cox11 is probably only required in sub-stoichiometric amounts relative to the structural units []. The C-terminal region of the protein is known to form a dimer. Each monomer coordinates one Cu(I) ion via three conserved cysteine residues (111, 208 and 210) in Saccharomyces cerevisiae (P19516 from SWISSPROT). Met 224 is also thought to play a role in copper transfer or stabilising the copper site [].; GO: 0005507 copper ion binding; PDB: 1SO9_A 1SP0_A.
Probab=33.80 E-value=84 Score=26.32 Aligned_cols=49 Identities=14% Similarity=0.168 Sum_probs=28.3
Q ss_pred CcEEEEEeecCccccccCCcceEEEEEE-EEe-CCcEEEEEEEEeCCCCcEEE
Q 021412 136 NPVITLELKDGPYSRAMWDFSFQALFKV-ILN-TKSISTELTITNTDNKPFSF 186 (312)
Q Consensus 136 ~~~v~l~l~~~~~~~~~~P~~f~l~~~y-~L~-~~~L~i~~~v~N~~~~~~pf 186 (312)
...|+++++.+-. .+-||.|+-+.+. ++. |..-.+.+.++|.+++++.-
T Consensus 35 ~R~i~V~F~a~~~--~~lpW~F~P~q~~v~V~pGe~~~~~y~a~N~s~~~i~g 85 (152)
T PF04442_consen 35 SRTITVRFDANVN--PGLPWEFKPEQRSVKVHPGETALVFYEATNPSDKPITG 85 (152)
T ss_dssp S-EEEEEEEEEE---TTS-EEEE-S-SEEEEETT--EEEEEEEEE-SSS-EE-
T ss_pred CcEEEEEEEeecC--CCCceEEEeeeeeEEeCCCCEEEEEEEEECCCCCcEEE
Confidence 4567777765532 5678888765543 555 67778899999999999753
No 47
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=32.24 E-value=2.1e+02 Score=25.67 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=36.1
Q ss_pred CcEEEEEeecCccccccCCcceEEEEEE-EEe-CCcEEEEEEEEeCCCCcEEEee
Q 021412 136 NPVITLELKDGPYSRAMWDFSFQALFKV-ILN-TKSISTELTITNTDNKPFSFSS 188 (312)
Q Consensus 136 ~~~v~l~l~~~~~~~~~~P~~f~l~~~y-~L~-~~~L~i~~~v~N~~~~~~pf~~ 188 (312)
...|+++++.+-. .+-||.|+-+++. ++. |..-.+.++++|.+++++.--.
T Consensus 106 ~R~I~V~F~a~v~--~~lpW~F~P~q~~v~V~pGE~~lv~Y~a~N~sd~~i~G~A 158 (232)
T PTZ00128 106 KRLIKIRFLADTG--STMPWEFEPLQKEVEVLPGETALAFYRAKNRSDKPVIGVA 158 (232)
T ss_pred ceEEEEEEeccCC--CCCCceEEeeeeEEEEcCCCeEEEEEEEECCCCCcEEEEE
Confidence 4567777765432 4568888766654 555 6777888999999999986443
No 48
>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0004866 endopeptidase inhibitor activity; PDB: 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 2PN5_A 3FRP_G 3HRZ_B ....
Probab=31.28 E-value=1.3e+02 Score=22.40 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=24.7
Q ss_pred CcceEEEEEEEEe-CCcEEEEEEEEeCCCCcEEEee
Q 021412 154 DFSFQALFKVILN-TKSISTELTITNTDNKPFSFSS 188 (312)
Q Consensus 154 P~~f~l~~~y~L~-~~~L~i~~~v~N~~~~~~pf~~ 188 (312)
|+-.++.+=+.|. ++.+.+.++|.|..++.+.+..
T Consensus 55 p~~i~~~lP~~l~~GD~~~i~v~v~N~~~~~~~v~V 90 (92)
T PF00207_consen 55 PFFIQLNLPRSLRRGDQIQIPVTVFNYTDKDQEVTV 90 (92)
T ss_dssp SEEEEEE--SEEETTSEEEEEEEEEE-SSS-EEEEE
T ss_pred eEEEEcCCCcEEecCCEEEEEEEEEeCCCCCEEEEE
Confidence 5566666667777 8999999999999998887754
No 49
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=30.58 E-value=7.4e+02 Score=27.40 Aligned_cols=35 Identities=11% Similarity=0.250 Sum_probs=27.9
Q ss_pred eEEEEEcCCccEEEEecCCeEEEEEEECCCeeeeeeC
Q 021412 51 PKVVLTSAGGSEAELYLFGGCVTSWKASNDKDLLFVR 87 (312)
Q Consensus 51 ~~v~L~~~~g~~a~I~~~Gg~i~s~~~~~g~evL~~~ 87 (312)
..++|+.++ .++.+...=|.|+||+. +|+++|...
T Consensus 749 ~~~~i~~~~-~~~~f~~~~G~l~s~~~-~g~~~l~~~ 783 (1027)
T PRK09525 749 QDFCIELGN-QRWQFNRQSGLLSQWWV-GGKEQLLTP 783 (1027)
T ss_pred CeEEEEECC-EEEEEECCCceEEEEEE-CCEEeeccC
Confidence 456677776 88899877789999987 689998754
No 50
>PF13629 T2SS-T3SS_pil_N: Pilus formation protein N terminal region
Probab=30.15 E-value=1.5e+02 Score=21.03 Aligned_cols=47 Identities=11% Similarity=0.285 Sum_probs=34.3
Q ss_pred ceeccCCCcceEEeCCCCeEEEcCCCCCeEEEEEc--CCCcEEEeCCCC
Q 021412 229 DRVTFPGFVDCIYLDAPSVVHLDNGLGDTITIRNT--NWSDAVLWNPHM 275 (312)
Q Consensus 229 ~~~~~~~~~D~~y~~~~~~~~ld~~~g~~l~v~~~--~~~~~vvwtp~~ 275 (312)
..+.++....+++...+.-+.+...+.+++.|... |...+.||...+
T Consensus 13 ~~l~~~~~~~rV~v~dp~Iadv~~~~~~~v~i~gk~~G~T~l~vw~~~~ 61 (72)
T PF13629_consen 13 RILRLPGPITRVAVGDPEIADVTVLSPNEVYITGKKPGTTTLIVWDKDG 61 (72)
T ss_pred EEEEcCCCcEEEEECCCCEEEEEEeCCCEEEEEEeCceeEEEEEECCCC
Confidence 35666778889998887766553335678888865 789999997654
No 51
>PF14742 GDE_N_bis: N-terminal domain of (some) glycogen debranching enzymes
Probab=27.04 E-value=4e+02 Score=22.82 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=31.0
Q ss_pred cCCcceEEEEEEEEeCCcEEEEEEEEeCCCCcEEEeeec
Q 021412 152 MWDFSFQALFKVILNTKSISTELTITNTDNKPFSFSSAL 190 (312)
Q Consensus 152 ~~P~~f~l~~~y~L~~~~L~i~~~v~N~~~~~~pf~~g~ 190 (312)
.......++.+-.|.++ |.-+++++|.+.+|..+.+.+
T Consensus 76 ~~~~~l~l~R~r~v~~~-~~E~l~l~N~~~~pv~~~l~l 113 (194)
T PF14742_consen 76 IPDGTLHLRRERFVGGG-LYERLTLTNYSPEPVELTLSL 113 (194)
T ss_pred cCCCeEEEEEEEEECCC-CEEEEEEEeCCCCCEEEEEEE
Confidence 34567788888888778 999999999999988877654
No 52
>PF09299 Mu-transpos_C: Mu transposase, C-terminal; InterPro: IPR015378 This domain is found in various prokaryotic integrases and transposases. It adopts a beta-barrel structure with Greek-key topology []. ; PDB: 1BCO_A 1BCM_B.
Probab=23.64 E-value=1.1e+02 Score=20.96 Aligned_cols=26 Identities=19% Similarity=0.613 Sum_probs=19.3
Q ss_pred CCCeEEEEEc--CCCcEEEeCCCCCCCCCCCcEEEE
Q 021412 254 LGDTITIRNT--NWSDAVLWNPHMQMEACYKDFVCV 287 (312)
Q Consensus 254 ~g~~l~v~~~--~~~~~vvwtp~~~~~~~~~~fvCi 287 (312)
.|.++.|..| +...+.||.+. . |||.
T Consensus 34 ~g~~V~vryDp~dl~~i~V~~~~-------g-~ic~ 61 (62)
T PF09299_consen 34 IGQKVRVRYDPDDLSRIYVYDED-------G-FICE 61 (62)
T ss_dssp S-SEEEEEE-GGGTTEEEEEETT-------S-EEEE
T ss_pred cCCEEEEEECcccCCEEEEEECC-------c-EEEE
Confidence 4777888886 78899999975 4 9995
No 53
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=21.03 E-value=2e+02 Score=21.16 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=29.3
Q ss_pred EEEcCCCcEEEeCCCCCCCCCCCcEEEEccCc------------ccc--eEECCCCEEEEEEE
Q 021412 260 IRNTNWSDAVLWNPHMQMEACYKDFVCVENAK------------IGK--VQLEPEQSWTAKQH 308 (312)
Q Consensus 260 v~~~~~~~~vvwtp~~~~~~~~~~fvCiEP~~------------~~~--~~L~PGe~~~~~~~ 308 (312)
|.+.+|.+-.-|.=. +.=+.|||.- +.+ ..|+||..+++.++
T Consensus 23 V~Ag~f~W~F~W~F~-------~G~L~V~PslGRALI~d~L~RFL~k~DY~LEpGgdY~Ftir 78 (80)
T PF11344_consen 23 VSAGGFEWQFQWHFR-------RGELSVEPSLGRALIQDPLGRFLEKSDYQLEPGGDYSFTIR 78 (80)
T ss_pred EEccceEEEEEEEEc-------CCcEEEccccchHHHHhHHHHHHhhcceeccCCCceEEEEe
Confidence 555567777777633 3349999972 122 99999999987764
Done!