Query 021414
Match_columns 312
No_of_seqs 240 out of 1294
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 02:46:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021414.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021414hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03014 carbonic anhydrase 100.0 1.1E-96 2E-101 705.7 27.9 311 1-312 1-336 (347)
2 PLN03019 carbonic anhydrase 100.0 6E-70 1.3E-74 519.1 24.6 248 64-312 71-330 (330)
3 PLN00416 carbonate dehydratase 100.0 8.1E-64 1.8E-68 466.8 23.7 245 66-311 1-256 (258)
4 PLN03006 carbonate dehydratase 100.0 3.8E-60 8.3E-65 448.3 20.6 223 84-308 49-283 (301)
5 PLN02154 carbonic anhydrase 100.0 7E-51 1.5E-55 383.3 20.1 195 110-305 71-275 (290)
6 cd00884 beta_CA_cladeB Carboni 100.0 6.1E-51 1.3E-55 365.4 16.7 179 121-300 1-190 (190)
7 PRK10437 carbonic anhydrase; P 100.0 1.7E-50 3.6E-55 369.7 19.2 185 114-307 3-198 (220)
8 KOG1578 Predicted carbonic anh 100.0 4.6E-51 1E-55 378.3 12.8 249 43-303 2-260 (276)
9 PRK15219 carbonic anhydrase; P 100.0 3.3E-50 7.1E-55 373.0 17.7 180 108-300 50-244 (245)
10 cd00883 beta_CA_cladeA Carboni 100.0 3.5E-50 7.6E-55 357.9 16.6 170 122-300 1-182 (182)
11 COG0288 CynT Carbonic anhydras 100.0 1.9E-49 4.1E-54 360.1 18.3 187 113-306 2-201 (207)
12 cd03378 beta_CA_cladeC Carboni 100.0 1.8E-46 3.9E-51 326.5 17.3 150 111-300 1-154 (154)
13 cd00382 beta_CA Carbonic anhyd 100.0 2.4E-41 5.3E-46 282.4 14.8 119 144-300 1-119 (119)
14 PF00484 Pro_CA: Carbonic anhy 100.0 2.2E-41 4.7E-46 290.9 13.3 142 148-297 1-153 (153)
15 cd03379 beta_CA_cladeD Carboni 100.0 3.1E-38 6.7E-43 270.8 13.2 135 144-300 1-142 (142)
16 KOG1578 Predicted carbonic anh 98.4 8.3E-09 1.8E-13 97.0 -5.2 178 118-300 3-249 (276)
17 PF10070 DUF2309: Uncharacteri 78.9 3.5 7.6E-05 45.0 5.6 39 266-304 539-583 (788)
18 PF12778 PXPV: PXPV repeat (3 61.5 4.2 9.2E-05 24.6 0.9 18 41-58 4-21 (22)
19 TIGR01838 PHA_synth_I poly(R)- 53.9 49 0.0011 34.7 7.7 165 48-219 45-275 (532)
20 COG1254 AcyP Acylphosphatases 50.6 13 0.00027 30.1 2.2 20 281-300 28-47 (92)
21 COG3002 Uncharacterized protei 49.8 26 0.00056 37.8 4.9 37 267-303 602-644 (880)
22 PF00561 Abhydrolase_1: alpha/ 42.6 18 0.0004 30.7 2.2 31 190-221 28-58 (230)
23 TIGR02742 TrbC_Ftype type-F co 34.7 73 0.0016 27.3 4.6 56 130-204 57-112 (130)
24 PF08822 DUF1804: Protein of u 34.0 99 0.0021 27.7 5.4 58 68-127 105-162 (165)
25 PF00009 GTP_EFTU: Elongation 33.6 25 0.00053 30.6 1.6 14 205-218 3-16 (188)
26 KOG0025 Zn2+-binding dehydroge 31.1 70 0.0015 31.6 4.3 42 161-213 153-194 (354)
27 PRK11181 23S rRNA (guanosine-2 30.8 2.1E+02 0.0046 26.6 7.4 75 133-217 54-133 (244)
28 PF00355 Rieske: Rieske [2Fe-2 29.1 19 0.00042 27.8 0.1 16 284-299 65-80 (97)
29 cd01891 TypA_BipA TypA (tyrosi 28.7 35 0.00077 29.6 1.8 13 205-217 2-14 (194)
30 PRK11440 putative hydrolase; P 26.8 1.2E+02 0.0026 26.5 4.8 48 164-221 90-137 (188)
31 PF04019 DUF359: Protein of un 25.8 2.6E+02 0.0057 23.6 6.4 80 140-227 6-85 (121)
32 COG0279 GmhA Phosphoheptose is 24.7 4.6E+02 0.0099 23.8 8.0 64 149-223 84-154 (176)
33 cd01890 LepA LepA subfamily. 24.5 41 0.00089 28.2 1.3 12 206-217 1-12 (179)
34 COG1116 TauB ABC-type nitrate/ 23.8 46 0.001 31.7 1.6 15 204-218 28-42 (248)
35 cd03528 Rieske_RO_ferredoxin R 23.6 31 0.00067 26.8 0.4 15 284-298 61-75 (98)
36 PRK14432 acylphosphatase; Prov 23.0 60 0.0013 26.0 1.9 20 282-301 27-46 (93)
37 cd03478 Rieske_AIFL_N AIFL (ap 22.7 28 0.00061 27.0 0.0 15 284-298 60-74 (95)
38 cd04160 Arfrp1 Arfrp1 subfamil 22.4 46 0.001 27.5 1.3 12 207-218 1-12 (167)
39 PF14618 DUF4452: Domain of un 22.2 67 0.0015 28.8 2.2 62 6-67 77-148 (165)
40 cd01878 HflX HflX subfamily. 21.7 59 0.0013 28.3 1.8 16 203-218 39-54 (204)
41 PRK14440 acylphosphatase; Prov 21.7 70 0.0015 25.4 2.1 20 281-300 27-46 (90)
42 PRK14423 acylphosphatase; Prov 21.1 83 0.0018 25.0 2.4 20 281-300 29-48 (92)
43 PRK14430 acylphosphatase; Prov 21.1 70 0.0015 25.5 2.0 19 282-300 29-47 (92)
44 PRK09778 putative antitoxin of 20.9 1.2E+02 0.0027 24.8 3.3 73 12-103 6-80 (97)
45 cd04167 Snu114p Snu114p subfam 20.4 56 0.0012 29.1 1.4 13 206-218 1-13 (213)
46 PRK14445 acylphosphatase; Prov 20.2 91 0.002 24.7 2.5 20 281-300 28-47 (91)
47 cd01887 IF2_eIF5B IF2/eIF5B (i 20.2 62 0.0013 26.6 1.6 13 206-218 1-13 (168)
48 PF08184 Cuticle_2: Cuticle pr 20.2 51 0.0011 23.9 0.9 13 286-298 7-19 (59)
49 PF07859 Abhydrolase_3: alpha/ 20.1 57 0.0012 28.2 1.4 31 191-221 51-86 (211)
No 1
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=1.1e-96 Score=705.74 Aligned_cols=311 Identities=77% Similarity=1.191 Sum_probs=284.1
Q ss_pred CCcccccceeecccccccccccccCCCCc-eEEEeec------------CCCCCCCcccCCccccCCCcccCcchhhHhh
Q 021414 1 MSTASINNWCLTSVSQAQSSLIKSSTLRP-SIVARLN------------SPASPPSLIRNEPVFAAPAPIINPNWREDMA 67 (312)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (312)
|||++|||||+||++++++++++ .++|| ++||+|+ |+++||+||||+||||||+|||||+|+|||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~ 79 (347)
T PLN03014 1 MSTAPLSGFFLTSLSPSQSSLQK-LSLRTSSTVACLPPASSSSSSSSSSSSRSVPTLIRNEPVFAAPAPIIAPYWSEEMG 79 (347)
T ss_pred CccccccceeccccCcccccccc-cccCCcceEEEeccccccccccCCCCCCCCchhhcCCccccCCCcccCchhHhhhc
Confidence 99999999999999999999977 78899 8999996 1133899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHhhhhcCcchhHhhhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 021414 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (312)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~t~~l~~~~--~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~ 145 (312)
++|||+||++|+|||+||++|+++|++||+++|+||++.. .+.+++++++|++||++|+++.+..++++|+++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~~~~~~~~La~GQ~ 159 (347)
T PLN03014 80 TEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPALYGELAKGQS 159 (347)
T ss_pred hhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhccccCHHHHHhhccCCC
Confidence 9999999999999999999999999999999999998632 35689999999999999999999999999999999999
Q ss_pred CcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCcchhhhcccc
Q 021414 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (312)
Q Consensus 146 PkalVItCsDSRV~Pe~il~~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHSdCGai~Aa~~~ 225 (312)
|+++||+||||||+|+.+||++|||+||+||+||+|+++|...|++++++|||||.+|||++|||||||+||||+|+++.
T Consensus 160 P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~~ 239 (347)
T PLN03014 160 PKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMSF 239 (347)
T ss_pred CCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999876556678899999999999999999999999999999876
Q ss_pred ccCCCCCchhHHHHHhh----------hcCCCCcccccchhHHHHHHHHHHHhhcChHHHhhhhCCceEEEEEEEEccCC
Q 021414 226 TFDGNNSTDFIEDWVLT----------EHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNG 295 (312)
Q Consensus 226 ~~~g~~~~~~I~~wl~~----------~~~~l~~~e~~~~~e~~nV~~qv~~L~~~P~v~~~v~~g~L~V~G~vYDi~TG 295 (312)
.+++....++|+.|+.. +.....+.+++..++++||++||++|++||+|++++++|+|.||||+||++||
T Consensus 240 ~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~G~~YDi~TG 319 (347)
T PLN03014 240 PLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKGGYYDFVKG 319 (347)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEECCCc
Confidence 55555556899999842 12333455666778899999999999999999999999999999999999999
Q ss_pred eEEEEeccCCCCCCCCC
Q 021414 296 SFELWGLDFSLSPPLSV 312 (312)
Q Consensus 296 ~v~~v~~~~~~~~~~~~ 312 (312)
+|++|+.+++++|++++
T Consensus 320 ~V~~l~~~~~~~~~~~~ 336 (347)
T PLN03014 320 AFELWGLEFGLSETSSV 336 (347)
T ss_pred eEEEeccccccCCcccc
Confidence 99999999999999875
No 2
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=6e-70 Score=519.13 Aligned_cols=248 Identities=78% Similarity=1.248 Sum_probs=223.0
Q ss_pred hHhhhhhHHHHHHHHHHHhhhhcCcchhHhhhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhh
Q 021414 64 EDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELA 141 (312)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~t~~l~~~~--~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La 141 (312)
++|+++|||+||++|+|||+||++|+++|++||+++|+||++.. .+++++++++|++||++|+.+.+.+++++|.+|+
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~La 150 (330)
T PLN03019 71 RRMGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKEGFVTFKKEKYETNPALYGELA 150 (330)
T ss_pred HHHhhhhHHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCCCCchhHHHHHHHHHHHHHHhccccccHHHHHhhc
Confidence 45889999999999999999999999999999999999998632 3678999999999999999999989999999999
Q ss_pred cCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCcchhhh
Q 021414 142 KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 221 (312)
Q Consensus 142 ~gQ~PkalVItCsDSRV~Pe~il~~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHSdCGai~A 221 (312)
+||+|+++||+||||||+|+.|||++|||+||+||+||+|+++|...+++++++|||||.+|||++|||||||+||||+|
T Consensus 151 ~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVkA 230 (330)
T PLN03019 151 KGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIKG 230 (330)
T ss_pred cCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHHH
Confidence 99999999999999999999999999999999999999999988766778999999999999999999999999999999
Q ss_pred ccccccCCCCCchhHHHHHhhhc----------CCCCcccccchhHHHHHHHHHHHhhcChHHHhhhhCCceEEEEEEEE
Q 021414 222 LMSFTFDGNNSTDFIEDWVLTEH----------GDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYD 291 (312)
Q Consensus 222 a~~~~~~g~~~~~~I~~wl~~~~----------~~l~~~e~~~~~e~~nV~~qv~~L~~~P~v~~~v~~g~L~V~G~vYD 291 (312)
+++...++....++|+.|+.... ....+.+++..+++ ||++|++||+++|+|++++++|+|.||||+||
T Consensus 231 al~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~-NV~~qv~nL~t~P~V~e~v~~G~L~I~G~~YD 309 (330)
T PLN03019 231 LMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER-AVNVSLANLLTYPFVREGVVKGTLALKGGYYD 309 (330)
T ss_pred HHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHHHHHhCHHHHHHHHcCCcEEEEEEEE
Confidence 99765555555689999994321 11233344444565 99999999999999999999999999999999
Q ss_pred ccCCeEEEEeccCCCCCCCCC
Q 021414 292 FVNGSFELWGLDFSLSPPLSV 312 (312)
Q Consensus 292 i~TG~v~~v~~~~~~~~~~~~ 312 (312)
++||+|++|+.+|+++|++++
T Consensus 310 l~TG~V~~~~~~~~~~~~~~~ 330 (330)
T PLN03019 310 FVNGSFELWELQFGISPVHSI 330 (330)
T ss_pred CCCceEEEEccccCcCCCCcC
Confidence 999999999999999999986
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=8.1e-64 Score=466.84 Aligned_cols=245 Identities=62% Similarity=1.059 Sum_probs=218.2
Q ss_pred hhhhhHHHHHHHHHHHhhhhcCcchhHhhhhHHHHHhhcCCCCCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCC
Q 021414 66 MANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQS 145 (312)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~t~~l~~~~~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~ 145 (312)
|+.+||+++|.+|.+||+.++++++.+++++..+++.|++.. .+|.+++++|++||+||+.+++..++++|++++.||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~ 79 (258)
T PLN00416 1 MATESYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELD-SSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQT 79 (258)
T ss_pred CCcccHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCC
Confidence 789999999999999999999999999999999999999875 7899999999999999999998888999999999999
Q ss_pred CcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCcchhhhcccc
Q 021414 146 PKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSF 225 (312)
Q Consensus 146 PkalVItCsDSRV~Pe~il~~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHSdCGai~Aa~~~ 225 (312)
|+++|||||||||+|+.|||.+|||+|||||+||+|+++|...++++++|||||+.+|||++|||||||+||||+|+++.
T Consensus 80 P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~ 159 (258)
T PLN00416 80 PKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSI 159 (258)
T ss_pred CCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHHhc
Confidence 99999999999999999999999999999999999999875445678899999999999999999999999999999864
Q ss_pred ccCC-CCCchhHHHHHhhh----------cCCCCcccccchhHHHHHHHHHHHhhcChHHHhhhhCCceEEEEEEEEccC
Q 021414 226 TFDG-NNSTDFIEDWVLTE----------HGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVN 294 (312)
Q Consensus 226 ~~~g-~~~~~~I~~wl~~~----------~~~l~~~e~~~~~e~~nV~~qv~~L~~~P~v~~~v~~g~L~V~G~vYDi~T 294 (312)
.+.. ....+++..|+... ....++.+.+..++++||++|+++|++||+|++++++|++.||||+||++|
T Consensus 160 ~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G~~Ydl~T 239 (258)
T PLN00416 160 EDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRGGHYNFVK 239 (258)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCC
Confidence 3221 12246899999421 122233444556788999999999999999999999999999999999999
Q ss_pred CeEEEEeccCCCCCCCC
Q 021414 295 GSFELWGLDFSLSPPLS 311 (312)
Q Consensus 295 G~v~~v~~~~~~~~~~~ 311 (312)
|+|++++++++-+|...
T Consensus 240 G~v~~~~~~~~~~p~~~ 256 (258)
T PLN00416 240 GTFDLWELDFKTTPAFA 256 (258)
T ss_pred ceEEEeccCcCCCCCcc
Confidence 99999999999988753
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=3.8e-60 Score=448.30 Aligned_cols=223 Identities=43% Similarity=0.822 Sum_probs=198.7
Q ss_pred hhcCcchhHhhhhHHHHHhhcCCC--CCChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChh
Q 021414 84 EKEDLKPVAAAKVEQITAQLQTPS--DTKAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPS 161 (312)
Q Consensus 84 ~~~~l~~~a~~~~~~~t~~l~~~~--~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~PkalVItCsDSRV~Pe 161 (312)
+..+|..+|++|++++|+||++.. ...+.+++++|++||.+|+..++..++++|.+|++||+|+++||+||||||+|+
T Consensus 49 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lvI~CsDSRV~Pe 128 (301)
T PLN03006 49 KATNLQVMASGKTPGLTQEANGVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLVIACADSRVCPS 128 (301)
T ss_pred cccchhhhhhhchHHHHHHHhhccCCCCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEEEEeccCCCCHH
Confidence 456888999999999999999654 245899999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCcchhhhccccccCCCCCchhHHHHHh
Q 021414 162 HVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVL 241 (312)
Q Consensus 162 ~il~~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHSdCGai~Aa~~~~~~g~~~~~~I~~wl~ 241 (312)
.|||++|||+|||||+||+|+++|... .++.++|||||.+|||++|||||||+||||+|+++..+.+. ..++|+.|+.
T Consensus 129 ~Ifd~~pGDlFVVRNaGNiVpp~d~~~-~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g~-~~~~I~~wv~ 206 (301)
T PLN03006 129 AVLGFQPGDAFTVRNIANLVPPYESGP-TETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEGD-SRSFIHNWVV 206 (301)
T ss_pred HHhCCCCCCEEEEeccccccCCccccc-cchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccCC-chhHHHHHHH
Confidence 999999999999999999999987532 46889999999999999999999999999999997655543 5679999993
Q ss_pred h------h----cCCCCcccccchhHHHHHHHHHHHhhcChHHHhhhhCCceEEEEEEEEccCCeEEEEeccCCCCC
Q 021414 242 T------E----HGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFSLSP 308 (312)
Q Consensus 242 ~------~----~~~l~~~e~~~~~e~~nV~~qv~~L~~~P~v~~~v~~g~L~V~G~vYDi~TG~v~~v~~~~~~~~ 308 (312)
. . .....+++++..++++||++|++||++||+|++++++|+|.|||||||+.||+++.|+++|+++.
T Consensus 207 ~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi~tG~l~~~~~~~~~~~ 283 (301)
T PLN03006 207 VGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFVDCTFEKWTVDYAASR 283 (301)
T ss_pred HHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEecccccccc
Confidence 1 1 12234556677899999999999999999999999999999999999999999999999998875
No 5
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=7e-51 Score=383.27 Aligned_cols=195 Identities=42% Similarity=0.790 Sum_probs=169.7
Q ss_pred ChHHHHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccc
Q 021414 110 KAFDSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKY 189 (312)
Q Consensus 110 ~p~~~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~PkalVItCsDSRV~Pe~il~~~pGD~FVvRNaGN~V~~~d~~~~ 189 (312)
+..+.+++|++||++|+.+++..++++|.+|+.||+|+++||+|+||||+|+.|||.+|||+||+||+||+|++++.. +
T Consensus 71 ~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g-~ 149 (290)
T PLN02154 71 TSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNG-P 149 (290)
T ss_pred hhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCC-c
Confidence 345779999999999999999999999999999999999999999999999999999999999999999999997542 2
Q ss_pred hhhHHHHHHHHHhcCcceEEEeccCCcchhhhccccccCCCCCchhHHHHHhhhc----------CCCCcccccchhHHH
Q 021414 190 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVLTEH----------GDKPFGDQCTYCEKE 259 (312)
Q Consensus 190 ~~v~aSLEyAV~~L~Vk~IVV~GHSdCGai~Aa~~~~~~g~~~~~~I~~wl~~~~----------~~l~~~e~~~~~e~~ 259 (312)
.+++++|||||.+|+|++|||||||+||||+|+++.........++++.|+.... ....+++.+..++++
T Consensus 150 ~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~~~~~~~~~~~~~~~e~~ 229 (290)
T PLN02154 150 TETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQLASSHLSFDEQCRNCEKE 229 (290)
T ss_pred cchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHH
Confidence 4688999999999999999999999999999998753222234578999994311 122334556678889
Q ss_pred HHHHHHHHhhcChHHHhhhhCCceEEEEEEEEccCCeEEEEeccCC
Q 021414 260 AVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELWGLDFS 305 (312)
Q Consensus 260 nV~~qv~~L~~~P~v~~~v~~g~L~V~G~vYDi~TG~v~~v~~~~~ 305 (312)
||+.|++||++||+|++++++|+|.||||+||+.||+|+.|+.+.+
T Consensus 230 NV~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~ 275 (290)
T PLN02154 230 SIKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSD 275 (290)
T ss_pred HHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccC
Confidence 9999999999999999999999999999999999999999988764
No 6
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=6.1e-51 Score=365.41 Aligned_cols=179 Identities=50% Similarity=0.805 Sum_probs=155.0
Q ss_pred HHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCc-cchhhHHHHHHH
Q 021414 121 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT-KYAGVGAAVEYA 199 (312)
Q Consensus 121 GN~rF~~~~~~~~p~~~~~La~gQ~PkalVItCsDSRV~Pe~il~~~pGD~FVvRNaGN~V~~~d~~-~~~~v~aSLEyA 199 (312)
||++|++..+..++++|++|+.||+|+++||+||||||+|+.+||.+|||+||+||+||+|++++.. .+.++.++||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 7999999888889999999999999999999999999999999999999999999999999987532 235688999999
Q ss_pred HHhcCcceEEEeccCCcchhhhccccccCCCCCchhHHHHHhhhc----------CCCCcccccchhHHHHHHHHHHHhh
Q 021414 200 VLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVLTEH----------GDKPFGDQCTYCEKEAVNVSLSNLL 269 (312)
Q Consensus 200 V~~L~Vk~IVV~GHSdCGai~Aa~~~~~~g~~~~~~I~~wl~~~~----------~~l~~~e~~~~~e~~nV~~qv~~L~ 269 (312)
|.+|+|++|||||||+||||+|+++... +....+++..|+.... ...+..+..+.++++||..|+++|+
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~ 159 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLL 159 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986533 2234568999993311 1123334556788999999999999
Q ss_pred cChHHHhhhhCCceEEEEEEEEccCCeEEEE
Q 021414 270 TYPFVREGLVNKTLALKGGYYDFVNGSFELW 300 (312)
Q Consensus 270 ~~P~v~~~v~~g~L~V~G~vYDi~TG~v~~v 300 (312)
++|+|++++++|+|.||||+||+.||+|+.+
T Consensus 160 ~~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 160 TYPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred hCHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 9999999999999999999999999999864
No 7
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=1.7e-50 Score=369.73 Aligned_cols=185 Identities=25% Similarity=0.442 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhH
Q 021414 114 SVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVG 193 (312)
Q Consensus 114 ~l~~Ll~GN~rF~~~~~~~~p~~~~~La~gQ~PkalVItCsDSRV~Pe~il~~~pGD~FVvRNaGN~V~~~d~~~~~~v~ 193 (312)
.+++|++||++|++..+..++++|++++.||+|+++|||||||||+|+.+||.+|||+||+||+||+|+++|. ++.
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~----~~~ 78 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL----NCL 78 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc----chH
Confidence 4889999999999998888999999999999999999999999999999999999999999999999998764 478
Q ss_pred HHHHHHHHhcCcceEEEeccCCcchhhhccccccCCCCCchhHHHHHhhh----------cCCCCcccccchhHHHHHHH
Q 021414 194 AAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVLTE----------HGDKPFGDQCTYCEKEAVNV 263 (312)
Q Consensus 194 aSLEyAV~~L~Vk~IVV~GHSdCGai~Aa~~~~~~g~~~~~~I~~wl~~~----------~~~l~~~e~~~~~e~~nV~~ 263 (312)
++|||||.+|||++|||||||+||||+|+++.. ..+++..|+... ....+..+.++.++++||+.
T Consensus 79 ~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~-----~~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~ 153 (220)
T PRK10437 79 SVVQYAVDVLEVEHIIICGHYGCGGVQAAVENP-----ELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVME 153 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHHHHHcCC-----CcccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 899999999999999999999999999998642 236899998321 12223345567788999999
Q ss_pred HHHHhhcChHHHhhhhCC-ceEEEEEEEEccCCeEEEEeccCCCC
Q 021414 264 SLSNLLTYPFVREGLVNK-TLALKGGYYDFVNGSFELWGLDFSLS 307 (312)
Q Consensus 264 qv~~L~~~P~v~~~v~~g-~L~V~G~vYDi~TG~v~~v~~~~~~~ 307 (312)
|+++|+++|+|++++++| +|.||||+||+.||+|+.++......
T Consensus 154 qv~~L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~~ 198 (220)
T PRK10437 154 QVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNR 198 (220)
T ss_pred HHHHHhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCch
Confidence 999999999999999999 69999999999999999998765443
No 8
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-51 Score=378.33 Aligned_cols=249 Identities=46% Similarity=0.762 Sum_probs=234.4
Q ss_pred CcccCCccccCCCcccCcchhhHhhhhhHHHHHHHHHHHhhhhcCcchhHhhhhHHHHHhhcCCCCCChHHHHHHHHHHH
Q 021414 43 SLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGF 122 (312)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~t~~l~~~~~~~p~~~l~~Ll~GN 122 (312)
.|+|+.+.|..+.+...+.+..||..++|+.++..+.++|..+.++ +++++++++|++ .+.+++|+++|
T Consensus 2 ~i~~~~~~~~~t~~~~~~~~~~~mp~~~~~~~~~~dsrml~~r~~~--~~~~~~~~~~~~---------~~~~~~i~~~F 70 (276)
T KOG1578|consen 2 EILRGVIRFRNTTRKDLVEEIRDMPSPTAVMFTCMDSRMLPTRYNL--VAAAKIKKLTAE---------FDTLEDIGDMF 70 (276)
T ss_pred ccccccchhhhhhHHHhHHHHHhCCCHHHHHHHHHHhhccchhhhh--hhhhhhhhhhhc---------cchHHHHHhhH
Confidence 3889999999999999998899999999999999999999999999 899999999993 57899999999
Q ss_pred HHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHh
Q 021414 123 IHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLH 202 (312)
Q Consensus 123 ~rF~~~~~~~~p~~~~~La~gQ~PkalVItCsDSRV~Pe~il~~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~ 202 (312)
..|.++++.++|.+|..++++|+|+.+||+|+||||+|++|++++|||+|++||++|+|+|.|..++.+++|+|||+|.+
T Consensus 71 v~~~~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~ 150 (276)
T KOG1578|consen 71 VVRNSGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTT 150 (276)
T ss_pred hhhccccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888899999999999
Q ss_pred cCcceEEEeccCCcchhhhccccccCCCCCchhHHHHH----------hhhcCCCCcccccchhHHHHHHHHHHHhhcCh
Q 021414 203 LKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWV----------LTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYP 272 (312)
Q Consensus 203 L~Vk~IVV~GHSdCGai~Aa~~~~~~g~~~~~~I~~wl----------~~~~~~l~~~e~~~~~e~~nV~~qv~~L~~~P 272 (312)
|||++|+||||++||||+++|....++. ..+|+..|+ +.....+.+.+||..|+.++++.++.+|.+||
T Consensus 151 lkvenIiv~ghs~cgGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~ 229 (276)
T KOG1578|consen 151 LKVENIIVIGHSLCGGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYP 229 (276)
T ss_pred hccceEEEeccccCCchhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcCh
Confidence 9999999999999999999998877665 678999997 22345678889999999999999999999999
Q ss_pred HHHhhhhCCceEEEEEEEEccCCeEEEEecc
Q 021414 273 FVREGLVNKTLALKGGYYDFVNGSFELWGLD 303 (312)
Q Consensus 273 ~v~~~v~~g~L~V~G~vYDi~TG~v~~v~~~ 303 (312)
++++++.+|.+.+||++||+..|.+++|.+|
T Consensus 230 ~vr~~v~k~~l~~~G~~Y~fskg~~~~~~ld 260 (276)
T KOG1578|consen 230 FVREAVVKGFLQVHGGYYNFSKGTKEFWELD 260 (276)
T ss_pred HHHHHHhhcceeeeeeeEEeccCceeEEEec
Confidence 9999999999999999999999999999999
No 9
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=3.3e-50 Score=373.04 Aligned_cols=180 Identities=22% Similarity=0.341 Sum_probs=154.0
Q ss_pred CCChHHHHHHHHHHHHHHHhhhccCChhhH---HhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCC
Q 021414 108 DTKAFDSVERIKEGFIHFKREKYEKNPALY---SELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPY 184 (312)
Q Consensus 108 ~~~p~~~l~~Ll~GN~rF~~~~~~~~p~~~---~~La~gQ~PkalVItCsDSRV~Pe~il~~~pGD~FVvRNaGN~V~~~ 184 (312)
..+|++++++|++||+||+++.+. +++++ .++++||+|+++||+||||||+||.+||.+|||+||+||+||+|++
T Consensus 50 ~~~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~- 127 (245)
T PRK15219 50 KMTPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND- 127 (245)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc-
Confidence 368999999999999999998865 34433 3467899999999999999999999999999999999999999975
Q ss_pred CCccchhhHHHHHHHHHhcCcceEEEeccCCcchhhhccccccCCCCCchhHHHHHhhhcC--------C---CCccccc
Q 021414 185 DQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVLTEHG--------D---KPFGDQC 253 (312)
Q Consensus 185 d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHSdCGai~Aa~~~~~~g~~~~~~I~~wl~~~~~--------~---l~~~e~~ 253 (312)
++++|||||+.+|||++|||||||+||||+|+++... .++|..|+....+ . .+.++.+
T Consensus 128 ------~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~-----~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~ 196 (245)
T PRK15219 128 ------DLLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNVE-----LGNLTGLLDRIKPAIEVTEFDGERSSKNYKFV 196 (245)
T ss_pred ------chhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcCC-----cchHHHHHHHHHHHHHHHhhcccccCCHHHHH
Confidence 2678999999999999999999999999999987432 3589999843211 0 0222445
Q ss_pred chhHHHHHHHHHHHhhc-ChHHHhhhhCCceEEEEEEEEccCCeEEEE
Q 021414 254 TYCEKEAVNVSLSNLLT-YPFVREGLVNKTLALKGGYYDFVNGSFELW 300 (312)
Q Consensus 254 ~~~e~~nV~~qv~~L~~-~P~v~~~v~~g~L~V~G~vYDi~TG~v~~v 300 (312)
+.++++||+.|+++|++ +|++++++++|+|+||||+||++||+|+++
T Consensus 197 ~~~~~~NV~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 197 DAVARKNVELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 67889999999999986 899999999999999999999999999986
No 10
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=3.5e-50 Score=357.89 Aligned_cols=170 Identities=32% Similarity=0.548 Sum_probs=149.0
Q ss_pred HHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHH
Q 021414 122 FIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVL 201 (312)
Q Consensus 122 N~rF~~~~~~~~p~~~~~La~gQ~PkalVItCsDSRV~Pe~il~~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~ 201 (312)
|++|++.++.++|++|++++.||+|+++|||||||||+|+.+||.+|||+||+||+||+|+++|. ++.+||||||.
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~----~~~asleyAv~ 76 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL----NCLSVLQYAVD 76 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc----chhhhHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999998764 47799999999
Q ss_pred hcCcceEEEeccCCcchhhhccccccCCCCCchhHHHHHhhhc----------CCC-CcccccchhHHHHHHHHHHHhhc
Q 021414 202 HLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVLTEH----------GDK-PFGDQCTYCEKEAVNVSLSNLLT 270 (312)
Q Consensus 202 ~L~Vk~IVV~GHSdCGai~Aa~~~~~~g~~~~~~I~~wl~~~~----------~~l-~~~e~~~~~e~~nV~~qv~~L~~ 270 (312)
+|||++|||||||+||||+|+++.. ..+++..|+.... ... +..+..+.++++||++|+++|++
T Consensus 77 ~L~v~~IvV~GHs~CGav~a~~~~~-----~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~ 151 (182)
T cd00883 77 VLKVKHIIVCGHYGCGGVKAALTGK-----RLGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCK 151 (182)
T ss_pred hcCCCEEEEecCCCchHHHHHHcCC-----CCccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998643 2367888973211 111 22334557889999999999999
Q ss_pred ChHHHhhhhC-CceEEEEEEEEccCCeEEEE
Q 021414 271 YPFVREGLVN-KTLALKGGYYDFVNGSFELW 300 (312)
Q Consensus 271 ~P~v~~~v~~-g~L~V~G~vYDi~TG~v~~v 300 (312)
+|+|++++++ |+|.||||+||+.||+|+.+
T Consensus 152 ~p~i~~~~~~~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 152 TPIVQDAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred CHHHHHHHHcCCCeEEEEEEEEcCccEEEeC
Confidence 9999999999 89999999999999998753
No 11
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-49 Score=360.05 Aligned_cols=187 Identities=34% Similarity=0.551 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHHhhhccCChhhHHhhh-cCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchh
Q 021414 113 DSVERIKEGFIHFKREKYEKNPALYSELA-KGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAG 191 (312)
Q Consensus 113 ~~l~~Ll~GN~rF~~~~~~~~p~~~~~La-~gQ~PkalVItCsDSRV~Pe~il~~~pGD~FVvRNaGN~V~~~d~~~~~~ 191 (312)
..+++|++||++|.++++...+.+|+.++ ++|+|+++|||||||||+||.+||++|||+||+||+||+|++++ .+
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~----~~ 77 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPD----GS 77 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCc----cc
Confidence 46899999999999999888889998876 56999999999999999999999999999999999999999875 35
Q ss_pred hHHHHHHHHHhcCcceEEEeccCCcchhhhccccccCCCCCchhHHHHHhhh------cCCC----Ccc-cccchhHHHH
Q 021414 192 VGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVLTE------HGDK----PFG-DQCTYCEKEA 260 (312)
Q Consensus 192 v~aSLEyAV~~L~Vk~IVV~GHSdCGai~Aa~~~~~~g~~~~~~I~~wl~~~------~~~l----~~~-e~~~~~e~~n 260 (312)
+++|||||+.+|||++|||||||+||||+|+++....+.+ ++..|+... .... ... ++....++.|
T Consensus 78 ~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~n 154 (207)
T COG0288 78 VLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDN 154 (207)
T ss_pred hhHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHH
Confidence 8899999999999999999999999999999886655543 678887321 1111 111 3345567789
Q ss_pred HHHHHHHhhcChHHHhhhhCCc-eEEEEEEEEccCCeEEEEeccCCC
Q 021414 261 VNVSLSNLLTYPFVREGLVNKT-LALKGGYYDFVNGSFELWGLDFSL 306 (312)
Q Consensus 261 V~~qv~~L~~~P~v~~~v~~g~-L~V~G~vYDi~TG~v~~v~~~~~~ 306 (312)
|++|+++|+++|.|+.++..++ |.||||+||++||+++.++.....
T Consensus 155 V~~qv~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~ 201 (207)
T COG0288 155 VREQVANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATID 201 (207)
T ss_pred HHHHHHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEeccccc
Confidence 9999999999999999888776 999999999999999988776543
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.8e-46 Score=326.52 Aligned_cols=150 Identities=35% Similarity=0.531 Sum_probs=137.2
Q ss_pred hHHHHHHHHHHHHHHHhhhccC---ChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCc
Q 021414 111 AFDSVERIKEGFIHFKREKYEK---NPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQT 187 (312)
Q Consensus 111 p~~~l~~Ll~GN~rF~~~~~~~---~p~~~~~La~gQ~PkalVItCsDSRV~Pe~il~~~pGD~FVvRNaGN~V~~~d~~ 187 (312)
|.+++++|++||++|.+++... +++.|.+++++|+|+++||||||||++|+.+||++|||+||+||+||+|++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 6789999999999999876431 255688999999999999999999999999999999999999999999985
Q ss_pred cchhhHHHHHHHHHhcCcceEEEeccCCcchhhhccccccCCCCCchhHHHHHhhhcCCCCcccccchhHHHHHHHHHHH
Q 021414 188 KYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTFDGNNSTDFIEDWVLTEHGDKPFGDQCTYCEKEAVNVSLSN 267 (312)
Q Consensus 188 ~~~~v~aSLEyAV~~L~Vk~IVV~GHSdCGai~Aa~~~~~~g~~~~~~I~~wl~~~~~~l~~~e~~~~~e~~nV~~qv~~ 267 (312)
++.+|||||+.+|||++|||||||+||+++++ ++++||+.|+++
T Consensus 77 ---~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~---------------------------------~~~~nV~~~v~~ 120 (154)
T cd03378 77 ---DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA---------------------------------AVRANVKATVAK 120 (154)
T ss_pred ---hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH---------------------------------HHHHHHHHHHHH
Confidence 37789999999999999999999999999875 356899999999
Q ss_pred hhcChHHHh-hhhCCceEEEEEEEEccCCeEEEE
Q 021414 268 LLTYPFVRE-GLVNKTLALKGGYYDFVNGSFELW 300 (312)
Q Consensus 268 L~~~P~v~~-~v~~g~L~V~G~vYDi~TG~v~~v 300 (312)
|+++|++++ ++++|++.||||+||++||+++++
T Consensus 121 L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~~ 154 (154)
T cd03378 121 LRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred HHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEeC
Confidence 999999988 999999999999999999999873
No 13
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2.4e-41 Score=282.37 Aligned_cols=119 Identities=42% Similarity=0.744 Sum_probs=112.3
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCcchhhhcc
Q 021414 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (312)
Q Consensus 144 Q~PkalVItCsDSRV~Pe~il~~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHSdCGai~Aa~ 223 (312)
|+|+++||||||||++|+.+||++|||+||+||+||+|+++| .++++|||||+.+||+++|+|||||+||++++
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~----~~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a-- 74 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYD----LDVLASLEYAVEVLGVKHIIVCGHTDCGAVKA-- 74 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCc----ccHHHHHHHHHHhhCCCEEEEEccCCCcHHHH--
Confidence 799999999999999999999999999999999999999864 35889999999999999999999999999886
Q ss_pred ccccCCCCCchhHHHHHhhhcCCCCcccccchhHHHHHHHHHHHhhcChHHHhhhhCCceEEEEEEEEccCCeEEEE
Q 021414 224 SFTFDGNNSTDFIEDWVLTEHGDKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGSFELW 300 (312)
Q Consensus 224 ~~~~~g~~~~~~I~~wl~~~~~~l~~~e~~~~~e~~nV~~qv~~L~~~P~v~~~v~~g~L~V~G~vYDi~TG~v~~v 300 (312)
..++||++|+++|+++|+++++++++++.|||++||++||+++++
T Consensus 75 --------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~tG~v~~~ 119 (119)
T cd00382 75 --------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIETGKLEVL 119 (119)
T ss_pred --------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECCCCEEEeC
Confidence 346899999999999999999999999999999999999999875
No 14
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=2.2e-41 Score=290.90 Aligned_cols=142 Identities=34% Similarity=0.583 Sum_probs=114.1
Q ss_pred EEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCcchhhhcccccc
Q 021414 148 YMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF 227 (312)
Q Consensus 148 alVItCsDSRV~Pe~il~~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHSdCGai~Aa~~~~~ 227 (312)
++||||||||++|+.+||.+|||+||+||+||+|++.+ .++++|||||+.+||+++|||||||+|||+++++....
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~----~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~ 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD----DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-----HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc----cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc
Confidence 58999999999999999999999999999999998864 46889999999999999999999999999998876322
Q ss_pred CCCCCchhHHHHHhhhcC-----------CCCcccccchhHHHHHHHHHHHhhcChHHHhhhhCCceEEEEEEEEccCCe
Q 021414 228 DGNNSTDFIEDWVLTEHG-----------DKPFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGS 296 (312)
Q Consensus 228 ~g~~~~~~I~~wl~~~~~-----------~l~~~e~~~~~e~~nV~~qv~~L~~~P~v~~~v~~g~L~V~G~vYDi~TG~ 296 (312)
..+.+++|+....+ .....+.....+++||++|+++|+++|+|++++++|++.||||+||++||+
T Consensus 77 ----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~ 152 (153)
T PF00484_consen 77 ----EDGFLRDWLQKIRPALEECVDELLPSSWDFEDLDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGK 152 (153)
T ss_dssp ----TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTE
T ss_pred ----ccchHHHHHHhhhhhHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCcc
Confidence 34689999843211 111112233447899999999999999999999999999999999999998
Q ss_pred E
Q 021414 297 F 297 (312)
Q Consensus 297 v 297 (312)
|
T Consensus 153 v 153 (153)
T PF00484_consen 153 V 153 (153)
T ss_dssp E
T ss_pred C
Confidence 6
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=3.1e-38 Score=270.78 Aligned_cols=135 Identities=21% Similarity=0.275 Sum_probs=111.7
Q ss_pred CCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCcchhhhcc
Q 021414 144 QSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKGLM 223 (312)
Q Consensus 144 Q~PkalVItCsDSRV~Pe~il~~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHSdCGai~Aa~ 223 (312)
+.++++||||||||++|+.+||.+|||+||+||+||+|++ ++++||+||+.+||+++|+|||||+||+++++.
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~-------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~ 73 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD-------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTD 73 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH-------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecH
Confidence 4679999999999999999999999999999999999986 367899999999999999999999999999875
Q ss_pred ccccCCCCCchhHHHHHhhhcC-----CC--CcccccchhHHHHHHHHHHHhhcChHHHhhhhCCceEEEEEEEEccCCe
Q 021414 224 SFTFDGNNSTDFIEDWVLTEHG-----DK--PFGDQCTYCEKEAVNVSLSNLLTYPFVREGLVNKTLALKGGYYDFVNGS 296 (312)
Q Consensus 224 ~~~~~g~~~~~~I~~wl~~~~~-----~l--~~~e~~~~~e~~nV~~qv~~L~~~P~v~~~v~~g~L~V~G~vYDi~TG~ 296 (312)
+ .+..|+..... .. .........+++||++|+++|+++|+++ .+++||||+||++||+
T Consensus 74 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~-----~~i~V~G~~ydi~tG~ 138 (142)
T cd03379 74 E----------ELKEKMKERGIAEAYGGIDKEFWFLGFDDLEESVREDVERIRNHPLIP-----DDVPVHGYVYDVKTGK 138 (142)
T ss_pred H----------HHHHHHHHhcCcchhcccCcchhhcccccHHHHHHHHHHHHHhCcCcc-----CCCEEEEEEEECCCCE
Confidence 4 24456543210 11 1111123466899999999999999999 4899999999999999
Q ss_pred EEEE
Q 021414 297 FELW 300 (312)
Q Consensus 297 v~~v 300 (312)
++.+
T Consensus 139 v~~v 142 (142)
T cd03379 139 LTEV 142 (142)
T ss_pred EEeC
Confidence 9853
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.41 E-value=8.3e-09 Score=97.01 Aligned_cols=178 Identities=24% Similarity=0.326 Sum_probs=118.8
Q ss_pred HHHHHHHHHhhhccCChhhHHhhhcCCCCcEEEEeecCCCCChhhh----------------cCCCCCceEEEEcccccC
Q 021414 118 IKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHV----------------LDFQPGEAFVVRNVANIV 181 (312)
Q Consensus 118 Ll~GN~rF~~~~~~~~p~~~~~La~gQ~PkalVItCsDSRV~Pe~i----------------l~~~pGD~FVvRNaGN~V 181 (312)
|+.|..+|+...... +..++.+-++|.+..++|+|||+-|... +..+.||.|++||.||..
T Consensus 3 i~~~~~~~~~t~~~~---~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRKD---LVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHHH---hHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 667788888765432 2256777889999999999999999877 667899999999999999
Q ss_pred CCCCCccchhh-------HHHHHHHHHhcCcceEEEeccCCcchhhhcccccc--C---CCCCchhHHHHHhhh------
Q 021414 182 PPYDQTKYAGV-------GAAVEYAVLHLKVSNIVVIGHSACGGIKGLMSFTF--D---GNNSTDFIEDWVLTE------ 243 (312)
Q Consensus 182 ~~~d~~~~~~v-------~aSLEyAV~~L~Vk~IVV~GHSdCGai~Aa~~~~~--~---g~~~~~~I~~wl~~~------ 243 (312)
+.... |... -++|+.|+......||++|||++|-+++...+... + .......++.|+...
T Consensus 80 ~~p~~--f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIi 157 (276)
T KOG1578|consen 80 PNPTL--FGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENII 157 (276)
T ss_pred CChhh--hHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEE
Confidence 87421 1111 13577888888899999999999999998765432 1 112236789998221
Q ss_pred ------cCC-------------CCccc-cc-----------chhHHHHHHHHHHHhhcChHHH--hhhhCCceEEEE--E
Q 021414 244 ------HGD-------------KPFGD-QC-----------TYCEKEAVNVSLSNLLTYPFVR--EGLVNKTLALKG--G 288 (312)
Q Consensus 244 ------~~~-------------l~~~e-~~-----------~~~e~~nV~~qv~~L~~~P~v~--~~v~~g~L~V~G--~ 288 (312)
+++ .++.+ +. +.+...|..+|.+|..++.+.. ..+......++| -
T Consensus 158 v~ghs~cgGik~~m~~~~~~~~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k 237 (276)
T KOG1578|consen 158 VIGHSLCGGIKGLMSFSLEAPSRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVK 237 (276)
T ss_pred EeccccCCchhhcccccccCcchhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhh
Confidence 111 01110 00 1122346678888888777776 455556666666 5
Q ss_pred EEEccCCeEEEE
Q 021414 289 YYDFVNGSFELW 300 (312)
Q Consensus 289 vYDi~TG~v~~v 300 (312)
+.+...|..+.+
T Consensus 238 ~~l~~~G~~Y~f 249 (276)
T KOG1578|consen 238 GFLQVHGGYYNF 249 (276)
T ss_pred cceeeeeeeEEe
Confidence 555555554433
No 17
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=78.88 E-value=3.5 Score=45.04 Aligned_cols=39 Identities=28% Similarity=0.458 Sum_probs=30.8
Q ss_pred HHhhcChHHHhhhhCCce------EEEEEEEEccCCeEEEEeccC
Q 021414 266 SNLLTYPFVREGLVNKTL------ALKGGYYDFVNGSFELWGLDF 304 (312)
Q Consensus 266 ~~L~~~P~v~~~v~~g~L------~V~G~vYDi~TG~v~~v~~~~ 304 (312)
..|...|-||+.+++..| ..+|+..|..|-+|++++.+.
T Consensus 539 A~llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d~~~ 583 (788)
T PF10070_consen 539 AALLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFDLDL 583 (788)
T ss_pred HHHhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEcCCC
Confidence 456667888888776544 568999999999999998875
No 18
>PF12778 PXPV: PXPV repeat (3 copies)
Probab=61.48 E-value=4.2 Score=24.57 Aligned_cols=18 Identities=39% Similarity=0.872 Sum_probs=13.7
Q ss_pred CCCcccCCccccCCCccc
Q 021414 41 PPSLIRNEPVFAAPAPII 58 (312)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~ 58 (312)
.|..++-+||+.||+|.+
T Consensus 4 ~PVy~~PaPVyvaP~P~~ 21 (22)
T PF12778_consen 4 APVYVAPAPVYVAPAPVY 21 (22)
T ss_pred CCEEeccCceeecCCCcc
Confidence 566777888888888764
No 19
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=53.90 E-value=49 Score=34.68 Aligned_cols=165 Identities=24% Similarity=0.286 Sum_probs=93.3
Q ss_pred CccccCCCcccCcchhhHhhhhhHHHHHHHHHHHhhhhcCcchhHhhhhHHHHHhhcCCCC------CChHHHHH-----
Q 021414 48 EPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSD------TKAFDSVE----- 116 (312)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~t~~l~~~~~------~~p~~~l~----- 116 (312)
..=|++|+===+|. -++..++|--+-.-+..++.+-++++.....++.-.+.++-...+ .+| ++++
T Consensus 45 d~RF~~~~W~~~~~--~~~~~q~yl~~~~~~~~~~~~~~g~~~~~~~~~~f~~~q~~~a~sPsNf~~tNP-~~~~~~~~t 121 (532)
T TIGR01838 45 DRRFASPAWSSHPF--FDFLKQSYLLNSSWLLELVDAVEGLDPKTRRRLEFFTRQLINAMAPSNFLATNP-EALRLTVET 121 (532)
T ss_pred CCCCCCchhccChH--HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhCCcccccCCH-HHHHHHHHc
Confidence 34466554222232 467788888877888888888888888888888877777754332 234 3443
Q ss_pred ---HHHHHHHHHHhhhc---------cCChhhHHh---hh------------------------cCCCCcEEEEeecCCC
Q 021414 117 ---RIKEGFIHFKREKY---------EKNPALYSE---LA------------------------KGQSPKYMVFACSDSR 157 (312)
Q Consensus 117 ---~Ll~GN~rF~~~~~---------~~~p~~~~~---La------------------------~gQ~PkalVItCsDSR 157 (312)
.|++|-+.|.+... ..+.+.|+- ++ ....|..+|=+|+
T Consensus 122 ~g~~l~~G~~~~~~D~~~~~~~~~i~~~~~~~f~vg~~~a~Tpg~VV~~~~~~eLi~Y~P~t~~~~~~PlLiVp~~i--- 198 (532)
T TIGR01838 122 QGESLVRGMENLAEDLERGGGDLKIRQTDSSAFEVGRNLATTPGAVVFENELFQLIQYEPTTETVHKTPLLIVPPWI--- 198 (532)
T ss_pred CChhHHHHHHHHHHHHHhcCCCCCCCCCCccceeeCCCCCCCCCeEEEECCcEEEEEeCCCCCcCCCCcEEEECccc---
Confidence 46777777776331 112222210 00 0224444444432
Q ss_pred CChhhhcCCCCCc------------eEE--EEcccccCCCCCCccc--hhhHHHHHHHHHhcCcceEEEeccCCcchh
Q 021414 158 VCPSHVLDFQPGE------------AFV--VRNVANIVPPYDQTKY--AGVGAAVEYAVLHLKVSNIVVIGHSACGGI 219 (312)
Q Consensus 158 V~Pe~il~~~pGD------------~FV--vRNaGN~V~~~d~~~~--~~v~aSLEyAV~~L~Vk~IVV~GHSdCGai 219 (312)
.---|||+.||. +|+ .||.|---.......| .++.++|++....+|.+.|.++||+-=|.+
T Consensus 199 -~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~~g~~kv~lvG~cmGGtl 275 (532)
T TIGR01838 199 -NKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAITGEKQVNCVGYCIGGTL 275 (532)
T ss_pred -ccceeeecccchHHHHHHHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHHhcCCCCeEEEEECcCcHH
Confidence 123356655443 333 3565532221111122 246778888888899999999999854443
No 20
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=50.58 E-value=13 Score=30.07 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=17.5
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 021414 281 KTLALKGGYYDFVNGSFELW 300 (312)
Q Consensus 281 g~L~V~G~vYDi~TG~v~~v 300 (312)
.++.|+||+++..+|.|+.+
T Consensus 28 ~~lgl~G~V~N~~DGsVeiv 47 (92)
T COG1254 28 LRLGLTGWVKNLDDGSVEIV 47 (92)
T ss_pred HHCCCEEEEEECCCCeEEEE
Confidence 35679999999999999876
No 21
>COG3002 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.76 E-value=26 Score=37.78 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=23.3
Q ss_pred HhhcChHHHhhhhCCc------eEEEEEEEEccCCeEEEEecc
Q 021414 267 NLLTYPFVREGLVNKT------LALKGGYYDFVNGSFELWGLD 303 (312)
Q Consensus 267 ~L~~~P~v~~~v~~g~------L~V~G~vYDi~TG~v~~v~~~ 303 (312)
.|...|-||+++.+.. .....+..+..|.+++++++.
T Consensus 602 ~l~N~peVRq~lke~GI~Ipedt~FaaalHnTTtdelh~~dv~ 644 (880)
T COG3002 602 ALCNDPEVRQALKEYGISIPEDTVFAAALHNTTTDELHWFDVP 644 (880)
T ss_pred HHhCCHHHHHHHHhcCccCCccceeeeccccCchhheeeeehh
Confidence 3444555565555433 344566778888888888776
No 22
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=42.60 E-value=18 Score=30.73 Aligned_cols=31 Identities=29% Similarity=0.457 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHhcCcceEEEeccCCcchhhh
Q 021414 190 AGVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 221 (312)
Q Consensus 190 ~~v~aSLEyAV~~L~Vk~IVV~GHSdCGai~A 221 (312)
..+.+.+++-...||++.|.++|||- ||.-+
T Consensus 28 ~~~~~~~~~~~~~l~~~~~~~vG~S~-Gg~~~ 58 (230)
T PF00561_consen 28 DDLAADLEALREALGIKKINLVGHSM-GGMLA 58 (230)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEETH-HHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECC-ChHHH
Confidence 45667899999999999999999996 66554
No 23
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=34.66 E-value=73 Score=27.28 Aligned_cols=56 Identities=13% Similarity=0.180 Sum_probs=35.3
Q ss_pred ccCChhhHHhhhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcC
Q 021414 130 YEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLK 204 (312)
Q Consensus 130 ~~~~p~~~~~La~gQ~PkalVItCsDSRV~Pe~il~~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~ 204 (312)
..-+|.+|++..-.+-| ++|+.|.+..+..+.. ..+++-.+ ..||+ ||+||...+.
T Consensus 57 v~IdP~lF~~f~I~~VP-a~V~~~~~~~c~~~~~--~~~~~~d~--v~Gdv--------------sl~~ALe~ia 112 (130)
T TIGR02742 57 VQIDPQWFKQFDITAVP-AFVVVKDGLACLPEQP--CPESDYDV--VYGNV--------------SLKGALEKMA 112 (130)
T ss_pred EEEChHHHhhcCceEcC-EEEEECCCCcccccCC--CCCCCeeE--EEecc--------------cHHHHHHHHH
Confidence 34589999998877788 6888888875544322 24444333 33554 5777776643
No 24
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=33.99 E-value=99 Score=27.73 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=40.5
Q ss_pred hhhHHHHHHHHHHHhhhhcCcchhHhhhhHHHHHhhcCCCCCChHHHHHHHHHHHHHHHh
Q 021414 68 NQSYEEAIEALKKLLKEKEDLKPVAAAKVEQITAQLQTPSDTKAFDSVERIKEGFIHFKR 127 (312)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~t~~l~~~~~~~p~~~l~~Ll~GN~rF~~ 127 (312)
.+||..++++-|+++=|..+|. +|...++.+.+=+++.. +.-..++-++++.+.....
T Consensus 105 aDsf~K~vaaskr~lPets~La-vA~~vl~~l~~fv~e~~-P~h~~af~eiLepFg~~l~ 162 (165)
T PF08822_consen 105 ADSFSKMVAASKRVLPETSELA-VAMEVLELLAAFVQERY-PQHLAAFLEILEPFGEELE 162 (165)
T ss_pred HHHHHHHHHHHhhcCchHHHHH-HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888777777 57777777777777654 4445667777777655444
No 25
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=33.60 E-value=25 Score=30.59 Aligned_cols=14 Identities=43% Similarity=0.828 Sum_probs=12.3
Q ss_pred cceEEEeccCCcch
Q 021414 205 VSNIVVIGHSACGG 218 (312)
Q Consensus 205 Vk~IVV~GHSdCGa 218 (312)
+.+|.|+||.+||=
T Consensus 3 ~~~I~i~G~~~sGK 16 (188)
T PF00009_consen 3 IRNIAIIGHVDSGK 16 (188)
T ss_dssp EEEEEEEESTTSSH
T ss_pred EEEEEEECCCCCCc
Confidence 56899999999993
No 26
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=31.05 E-value=70 Score=31.63 Aligned_cols=42 Identities=29% Similarity=0.343 Sum_probs=31.8
Q ss_pred hhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEecc
Q 021414 161 SHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGH 213 (312)
Q Consensus 161 e~il~~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GH 213 (312)
.++.++++|| .||.|.||-. ++.++---+..+|++.|=|+-.
T Consensus 153 ~dfv~L~~GD-~vIQNganS~----------VG~~ViQlaka~GiktinvVRd 194 (354)
T KOG0025|consen 153 KDFVQLNKGD-SVIQNGANSG----------VGQAVIQLAKALGIKTINVVRD 194 (354)
T ss_pred HHHHhcCCCC-eeeecCcccH----------HHHHHHHHHHHhCcceEEEeec
Confidence 5677999999 8999999953 4444444467899999988754
No 27
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=30.77 E-value=2.1e+02 Score=26.55 Aligned_cols=75 Identities=16% Similarity=0.138 Sum_probs=40.9
Q ss_pred ChhhHHhhhcCCCCcEEEEeecCCCC----ChhhhcCCCC-CceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcce
Q 021414 133 NPALYSELAKGQSPKYMVFACSDSRV----CPSHVLDFQP-GEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSN 207 (312)
Q Consensus 133 ~p~~~~~La~gQ~PkalVItCsDSRV----~Pe~il~~~p-GD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~ 207 (312)
..+.+++++++++|.=++.-|...+. +.+.++.... +-++++=++ -.| ..++ +|-=....+|++.
T Consensus 54 ~~~~l~~ls~~~~~qGv~a~~~~~~~~~~~~~~~~~~~~~~~~~lvLd~v---~dp------~NlG-ai~Rta~a~G~~~ 123 (244)
T PRK11181 54 NRQTLDEKAEGAVHQGIIARVKPGRQLQENDLPDLLASLEQPFLLILDGV---TDP------HNLG-ACLRSADAAGVHA 123 (244)
T ss_pred CHHHHhhhhcCCCCceEEEEEecccccchhhHHHHHhcCCCCEEEEEcCC---CCc------chHH-HHHHHHHHcCCCE
Confidence 45667788877777666655654332 2233333222 223333222 111 1243 4555666799999
Q ss_pred EEEeccCCcc
Q 021414 208 IVVIGHSACG 217 (312)
Q Consensus 208 IVV~GHSdCG 217 (312)
|++.+|+.+.
T Consensus 124 vi~~~~~~~~ 133 (244)
T PRK11181 124 VIVPKDRSAQ 133 (244)
T ss_pred EEECCCCCCC
Confidence 9998887554
No 28
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=29.05 E-value=19 Score=27.80 Aligned_cols=16 Identities=19% Similarity=0.195 Sum_probs=13.3
Q ss_pred EEEEEEEEccCCeEEE
Q 021414 284 ALKGGYYDFVNGSFEL 299 (312)
Q Consensus 284 ~V~G~vYDi~TG~v~~ 299 (312)
..|||.||+.||++..
T Consensus 65 p~Hg~~Fd~~tG~~~~ 80 (97)
T PF00355_consen 65 PCHGWRFDLDTGECVG 80 (97)
T ss_dssp TTTTEEEETTTSBEEE
T ss_pred CCcCCEEeCCCceEec
Confidence 3799999999998653
No 29
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=28.70 E-value=35 Score=29.61 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=12.2
Q ss_pred cceEEEeccCCcc
Q 021414 205 VSNIVVIGHSACG 217 (312)
Q Consensus 205 Vk~IVV~GHSdCG 217 (312)
+++|+++||++||
T Consensus 2 ~r~i~ivG~~~~G 14 (194)
T cd01891 2 IRNIAIIAHVDHG 14 (194)
T ss_pred ccEEEEEecCCCC
Confidence 6799999999999
No 30
>PRK11440 putative hydrolase; Provisional
Probab=26.80 E-value=1.2e+02 Score=26.53 Aligned_cols=48 Identities=17% Similarity=0.148 Sum_probs=32.1
Q ss_pred cCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCcchhhh
Q 021414 164 LDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 221 (312)
Q Consensus 164 l~~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHSdCGai~A 221 (312)
+...+||.++.++--+-... + -|+.-....|+++++|+|=+-..-|.+
T Consensus 90 l~~~~~d~vi~K~~~saF~~--------T--~L~~~L~~~gi~~lii~Gv~T~~CV~~ 137 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYG--------T--DLELQLRRRGIDTIVLCGISTNIGVES 137 (188)
T ss_pred cCCCCCCEEEecCCcCCCCC--------C--CHHHHHHHCCCCEEEEeeechhHHHHH
Confidence 45678898887775554432 2 355557789999999999655444443
No 31
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=25.78 E-value=2.6e+02 Score=23.62 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=61.9
Q ss_pred hhcCCCCcEEEEeecCCCCChhhhcCCCCCceEEEEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCcchh
Q 021414 140 LAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGI 219 (312)
Q Consensus 140 La~gQ~PkalVItCsDSRV~Pe~il~~~pGD~FVvRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHSdCGai 219 (312)
+..|-.|...++-+==-|-+...... .....+.++|..+.+.. ++..+|..|+..-+--.|+|-|-.|==++
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~-------el~~ai~~a~~~~~~~~I~V~GEEDL~~l 77 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE-------ELIEAIKKALESGKPVVIFVDGEEDLAVL 77 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH-------HHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 45788999999988888877655444 55678999999999975 36678999987767778999999998777
Q ss_pred hhcccccc
Q 021414 220 KGLMSFTF 227 (312)
Q Consensus 220 ~Aa~~~~~ 227 (312)
-+.+..+.
T Consensus 78 Pail~aP~ 85 (121)
T PF04019_consen 78 PAILYAPE 85 (121)
T ss_pred HHHHhCCC
Confidence 76655443
No 32
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=24.71 E-value=4.6e+02 Score=23.82 Aligned_cols=64 Identities=23% Similarity=0.348 Sum_probs=45.1
Q ss_pred EEEeecCCCCChhhhcC------CCCCceEE-EEcccccCCCCCCccchhhHHHHHHHHHhcCcceEEEeccCCcchhhh
Q 021414 149 MVFACSDSRVCPSHVLD------FQPGEAFV-VRNVANIVPPYDQTKYAGVGAAVEYAVLHLKVSNIVVIGHSACGGIKG 221 (312)
Q Consensus 149 lVItCsDSRV~Pe~il~------~~pGD~FV-vRNaGN~V~~~d~~~~~~v~aSLEyAV~~L~Vk~IVV~GHSdCGai~A 221 (312)
-++||.=--...+.+|. -++||+++ +-+-||-- .++.+++-|. .+|+..|...|-++ |.++.
T Consensus 84 S~lTai~NDy~yd~vFsRqveA~g~~GDvLigISTSGNS~---------nVl~Ai~~Ak-~~gm~vI~ltG~~G-G~~~~ 152 (176)
T COG0279 84 SVLTAIANDYGYDEVFSRQVEALGQPGDVLIGISTSGNSK---------NVLKAIEAAK-EKGMTVIALTGKDG-GKLAG 152 (176)
T ss_pred HHHhhhhccccHHHHHHHHHHhcCCCCCEEEEEeCCCCCH---------HHHHHHHHHH-HcCCEEEEEecCCC-ccccc
Confidence 45677766667777774 35999776 77888753 3778999886 58888888888664 55554
Q ss_pred cc
Q 021414 222 LM 223 (312)
Q Consensus 222 a~ 223 (312)
.+
T Consensus 153 ~~ 154 (176)
T COG0279 153 LL 154 (176)
T ss_pred cc
Confidence 43
No 33
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=24.46 E-value=41 Score=28.20 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=11.0
Q ss_pred ceEEEeccCCcc
Q 021414 206 SNIVVIGHSACG 217 (312)
Q Consensus 206 k~IVV~GHSdCG 217 (312)
++|+++||++||
T Consensus 1 rni~~vG~~~~G 12 (179)
T cd01890 1 RNFSIIAHIDHG 12 (179)
T ss_pred CcEEEEeecCCC
Confidence 479999999999
No 34
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.84 E-value=46 Score=31.65 Aligned_cols=15 Identities=33% Similarity=0.696 Sum_probs=12.4
Q ss_pred CcceEEEeccCCcch
Q 021414 204 KVSNIVVIGHSACGG 218 (312)
Q Consensus 204 ~Vk~IVV~GHSdCGa 218 (312)
.-+-|.|+|||+||=
T Consensus 28 ~GEfvsilGpSGcGK 42 (248)
T COG1116 28 KGEFVAILGPSGCGK 42 (248)
T ss_pred CCCEEEEECCCCCCH
Confidence 346789999999994
No 35
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=23.57 E-value=31 Score=26.76 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=13.0
Q ss_pred EEEEEEEEccCCeEE
Q 021414 284 ALKGGYYDFVNGSFE 298 (312)
Q Consensus 284 ~V~G~vYDi~TG~v~ 298 (312)
..|||.||+.||+..
T Consensus 61 p~Hg~~fd~~~G~~~ 75 (98)
T cd03528 61 PLHGGRFDLRTGKAL 75 (98)
T ss_pred CCcCCEEECCCCccc
Confidence 489999999999864
No 36
>PRK14432 acylphosphatase; Provisional
Probab=22.97 E-value=60 Score=25.97 Aligned_cols=20 Identities=25% Similarity=0.389 Sum_probs=17.0
Q ss_pred ceEEEEEEEEccCCeEEEEe
Q 021414 282 TLALKGGYYDFVNGSFELWG 301 (312)
Q Consensus 282 ~L~V~G~vYDi~TG~v~~v~ 301 (312)
++.|+||+.+..+|.|+.+-
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~ 46 (93)
T PRK14432 27 NMKLKGFVKNLNDGRVEIVA 46 (93)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 46799999999999988653
No 37
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=22.73 E-value=28 Score=27.04 Aligned_cols=15 Identities=20% Similarity=0.585 Sum_probs=12.8
Q ss_pred EEEEEEEEccCCeEE
Q 021414 284 ALKGGYYDFVNGSFE 298 (312)
Q Consensus 284 ~V~G~vYDi~TG~v~ 298 (312)
..|||.||+.||+..
T Consensus 60 P~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 60 PWHGACFNLRTGDIE 74 (95)
T ss_pred CCCCCEEECCCCcCc
Confidence 479999999999754
No 38
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=22.44 E-value=46 Score=27.45 Aligned_cols=12 Identities=17% Similarity=0.628 Sum_probs=10.6
Q ss_pred eEEEeccCCcch
Q 021414 207 NIVVIGHSACGG 218 (312)
Q Consensus 207 ~IVV~GHSdCGa 218 (312)
+|+|+||.+||=
T Consensus 1 ~i~~vG~~~~GK 12 (167)
T cd04160 1 SVLILGLDNAGK 12 (167)
T ss_pred CEEEEecCCCCH
Confidence 489999999994
No 39
>PF14618 DUF4452: Domain of unknown function (DUF4452)
Probab=22.15 E-value=67 Score=28.79 Aligned_cols=62 Identities=26% Similarity=0.307 Sum_probs=32.4
Q ss_pred ccceeecccccccccccccCCCCceEEEeecCC-CCCCCc------ccCCccc---cCCCcccCcchhhHhh
Q 021414 6 INNWCLTSVSQAQSSLIKSSTLRPSIVARLNSP-ASPPSL------IRNEPVF---AAPAPIINPNWREDMA 67 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~ 67 (312)
-|-..++|.||.++...--.+..|.+.-.-.++ ..+|.. ---+|.- --+.|||+|.-++.|+
T Consensus 77 s~rsSlsS~SP~~SP~q~~~~~~~~~sl~~~s~~~~~p~~~~~~~~klhqpsa~R~RnaIpIVNP~Tgm~vs 148 (165)
T PF14618_consen 77 SNRSSLSSNSPSSSPTQHQIQPTPSFSLSSASPPFQPPRYTQQNNLKLHQPSAPRTRNAIPIVNPSTGMRVS 148 (165)
T ss_pred cCccccccCCCCCCccccccccCCCcccCCCCCCcCCCcccccccccccCCccccccCccceeCCCCCCccC
Confidence 445788888998777663233334333222211 112332 1122211 2368999998777665
No 40
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=21.75 E-value=59 Score=28.26 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=13.5
Q ss_pred cCcceEEEeccCCcch
Q 021414 203 LKVSNIVVIGHSACGG 218 (312)
Q Consensus 203 L~Vk~IVV~GHSdCGa 218 (312)
=++..|+|+||.+||=
T Consensus 39 ~~~~~I~iiG~~g~GK 54 (204)
T cd01878 39 SGIPTVALVGYTNAGK 54 (204)
T ss_pred cCCCeEEEECCCCCCH
Confidence 3467999999999993
No 41
>PRK14440 acylphosphatase; Provisional
Probab=21.67 E-value=70 Score=25.40 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=16.9
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 021414 281 KTLALKGGYYDFVNGSFELW 300 (312)
Q Consensus 281 g~L~V~G~vYDi~TG~v~~v 300 (312)
.++.|.||+.+..+|.|+.+
T Consensus 27 ~~~gl~G~V~N~~dG~Vei~ 46 (90)
T PRK14440 27 IRLGIKGYAKNLPDGSVEVV 46 (90)
T ss_pred HHcCCEEEEEECCCCCEEEE
Confidence 34679999999999988865
No 42
>PRK14423 acylphosphatase; Provisional
Probab=21.14 E-value=83 Score=24.99 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=17.1
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 021414 281 KTLALKGGYYDFVNGSFELW 300 (312)
Q Consensus 281 g~L~V~G~vYDi~TG~v~~v 300 (312)
.++.|.||+.+..+|.|+.+
T Consensus 29 ~~lgl~G~V~N~~dG~Vei~ 48 (92)
T PRK14423 29 RELGVDGWVRNLDDGRVEAV 48 (92)
T ss_pred HHcCCEEEEEECCCCeEEEE
Confidence 35779999999999998865
No 43
>PRK14430 acylphosphatase; Provisional
Probab=21.08 E-value=70 Score=25.54 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.2
Q ss_pred ceEEEEEEEEccCCeEEEE
Q 021414 282 TLALKGGYYDFVNGSFELW 300 (312)
Q Consensus 282 ~L~V~G~vYDi~TG~v~~v 300 (312)
++.|.||+.+..+|.|+.+
T Consensus 29 ~lgl~G~VrN~~dGsVei~ 47 (92)
T PRK14430 29 DLGLGGWVRNRADGTVEVM 47 (92)
T ss_pred HhCCEEEEEECCCCcEEEE
Confidence 4669999999999988854
No 44
>PRK09778 putative antitoxin of the YafO-YafN toxin-antitoxin system; Provisional
Probab=20.90 E-value=1.2e+02 Score=24.85 Aligned_cols=73 Identities=22% Similarity=0.202 Sum_probs=35.3
Q ss_pred cccccccccccccCC--CCceEEEeecCCCCCCCcccCCccccCCCcccCcchhhHhhhhhHHHHHHHHHHHhhhhcCcc
Q 021414 12 TSVSQAQSSLIKSST--LRPSIVARLNSPASPPSLIRNEPVFAAPAPIINPNWREDMANQSYEEAIEALKKLLKEKEDLK 89 (312)
Q Consensus 12 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (312)
+..+.+-|-+||.+. ++.-- .--|=+|+|.|- .+.|.+-|.|... .|+. .|.++.+++..
T Consensus 6 A~~taSISELKKNP~~~~~g~P---------VAILNhN~PafY----~Vpa~~yE~m~e~-LeD~--eL~~l~~~R~~-- 67 (97)
T PRK09778 6 AEKSVNITELRKNPAKYFIDQP---------VAVLSNNRPAGY----LLSASAFEALMDM-LAEQ--EEKKPIKARFR-- 67 (97)
T ss_pred hhhhccHHHHhhCHHHHhcCCc---------eEEecCCceeEE----EeCHHHHHHHHHH-HHhH--HHHHHHHHHcC--
Confidence 334455577888543 32222 233458999886 3444444555432 1111 24444544443
Q ss_pred hhHhhhhHHHHHhh
Q 021414 90 PVAAAKVEQITAQL 103 (312)
Q Consensus 90 ~~a~~~~~~~t~~l 103 (312)
-.++.++.++++-
T Consensus 68 -~~~~~~~~i~~~~ 80 (97)
T PRK09778 68 -PSAARLEEITRRA 80 (97)
T ss_pred -ccHHHHHHHHHHH
Confidence 2345555555443
No 45
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=20.38 E-value=56 Score=29.05 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.2
Q ss_pred ceEEEeccCCcch
Q 021414 206 SNIVVIGHSACGG 218 (312)
Q Consensus 206 k~IVV~GHSdCGa 218 (312)
++|+|+||.++|=
T Consensus 1 rnv~iiG~~~~GK 13 (213)
T cd04167 1 RNVAIAGHLHHGK 13 (213)
T ss_pred CcEEEEcCCCCCH
Confidence 4699999999993
No 46
>PRK14445 acylphosphatase; Provisional
Probab=20.24 E-value=91 Score=24.67 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.9
Q ss_pred CceEEEEEEEEccCCeEEEE
Q 021414 281 KTLALKGGYYDFVNGSFELW 300 (312)
Q Consensus 281 g~L~V~G~vYDi~TG~v~~v 300 (312)
.++.|.||+.+..+|.|+..
T Consensus 28 ~~~gl~G~V~N~~dG~Vei~ 47 (91)
T PRK14445 28 SELNLSGWVRNLPDGTVEIE 47 (91)
T ss_pred hhCCCEEEEEECCCCeEEEE
Confidence 45779999999999988854
No 47
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=20.23 E-value=62 Score=26.58 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=11.3
Q ss_pred ceEEEeccCCcch
Q 021414 206 SNIVVIGHSACGG 218 (312)
Q Consensus 206 k~IVV~GHSdCGa 218 (312)
+.|+|+||++||=
T Consensus 1 ~~i~iiG~~~~GK 13 (168)
T cd01887 1 PVVTVMGHVDHGK 13 (168)
T ss_pred CEEEEEecCCCCH
Confidence 4699999999993
No 48
>PF08184 Cuticle_2: Cuticle protein 7 isoform family; InterPro: IPR012540 This family consists of cuticle protein 7 isoforms that are isolated from the carapace cuticle of a juvenile horseshoe crab, Limulus polyphemus. There are 3 isoforms of cuticle protein 7. The 3 isoforms are N-terminally blocked but could be deblocked by treatment with pyroglutaminase, showing that the N-terminal residue is a pyroglutamine residue [].; GO: 0042302 structural constituent of cuticle
Probab=20.19 E-value=51 Score=23.86 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=10.9
Q ss_pred EEEEEEccCCeEE
Q 021414 286 KGGYYDFVNGSFE 298 (312)
Q Consensus 286 ~G~vYDi~TG~v~ 298 (312)
-|.-||++||.|.
T Consensus 7 ngytydietgqvs 19 (59)
T PF08184_consen 7 NGYTYDIETGQVS 19 (59)
T ss_pred CCcEEEeccceec
Confidence 4789999999874
No 49
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=20.06 E-value=57 Score=28.17 Aligned_cols=31 Identities=32% Similarity=0.413 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHh-----cCcceEEEeccCCcchhhh
Q 021414 191 GVGAAVEYAVLH-----LKVSNIVVIGHSACGGIKG 221 (312)
Q Consensus 191 ~v~aSLEyAV~~-----L~Vk~IVV~GHSdCGai~A 221 (312)
.+.+++++-..+ ...+.|+|+|||..|.+..
T Consensus 51 D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~ 86 (211)
T PF07859_consen 51 DVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLAL 86 (211)
T ss_dssp HHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHH
T ss_pred ccccceeeeccccccccccccceEEeecccccchhh
Confidence 466789998888 6778999999997665554
Done!