Query 021416
Match_columns 312
No_of_seqs 383 out of 1562
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 02:47:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13639 zf-RING_2: Ring finge 99.4 1.3E-13 2.7E-18 95.5 2.4 44 158-205 1-44 (44)
2 KOG4628 Predicted E3 ubiquitin 99.3 3.6E-12 7.9E-17 123.5 4.6 70 136-208 206-277 (348)
3 PF15227 zf-C3HC4_4: zinc fing 99.1 2.3E-11 5E-16 84.1 2.7 42 160-204 1-42 (42)
4 PF12678 zf-rbx1: RING-H2 zinc 99.1 4E-11 8.7E-16 92.2 3.8 46 156-205 18-73 (73)
5 PHA02929 N1R/p28-like protein; 99.0 3E-10 6.6E-15 105.6 4.4 70 136-209 149-227 (238)
6 smart00504 Ubox Modified RING 98.9 1.4E-09 3.1E-14 79.7 4.9 45 158-209 2-46 (63)
7 PLN03208 E3 ubiquitin-protein 98.9 1.5E-09 3.2E-14 97.8 4.8 51 156-209 17-79 (193)
8 PF13923 zf-C3HC4_2: Zinc fing 98.9 8.6E-10 1.9E-14 74.6 2.3 39 160-204 1-39 (39)
9 COG5540 RING-finger-containing 98.8 1.6E-09 3.5E-14 102.9 3.7 50 156-208 322-371 (374)
10 COG5243 HRD1 HRD ubiquitin lig 98.8 1.8E-09 3.9E-14 104.9 3.5 50 155-208 285-344 (491)
11 PF13920 zf-C3HC4_3: Zinc fing 98.8 1.9E-09 4.2E-14 76.5 2.7 47 157-210 2-49 (50)
12 cd00162 RING RING-finger (Real 98.8 8.2E-09 1.8E-13 69.2 4.1 44 159-207 1-44 (45)
13 TIGR00599 rad18 DNA repair pro 98.8 6.1E-09 1.3E-13 103.2 4.8 47 156-209 25-71 (397)
14 PF12861 zf-Apc11: Anaphase-pr 98.8 6.2E-09 1.3E-13 82.4 3.8 51 156-208 20-81 (85)
15 KOG0317 Predicted E3 ubiquitin 98.7 6.8E-09 1.5E-13 98.1 4.2 47 156-209 238-284 (293)
16 PF00097 zf-C3HC4: Zinc finger 98.7 7.3E-09 1.6E-13 70.2 2.7 41 160-204 1-41 (41)
17 KOG0823 Predicted E3 ubiquitin 98.7 8.1E-09 1.8E-13 94.9 3.3 50 156-209 46-95 (230)
18 PF14634 zf-RING_5: zinc-RING 98.7 1.6E-08 3.6E-13 70.2 3.0 44 159-206 1-44 (44)
19 PHA02926 zinc finger-like prot 98.6 1.8E-08 4E-13 92.4 3.8 55 156-210 169-231 (242)
20 KOG0320 Predicted E3 ubiquitin 98.6 1.4E-08 3.1E-13 90.1 2.6 48 156-208 130-177 (187)
21 smart00184 RING Ring finger. E 98.6 3.9E-08 8.4E-13 63.6 3.5 39 160-204 1-39 (39)
22 PF13445 zf-RING_UBOX: RING-ty 98.6 2.6E-08 5.5E-13 69.5 2.4 42 160-202 1-43 (43)
23 PF04564 U-box: U-box domain; 98.5 7.9E-08 1.7E-12 73.7 3.6 63 156-224 3-65 (73)
24 KOG0802 E3 ubiquitin ligase [P 98.5 4.7E-08 1E-12 100.5 2.9 47 156-206 290-338 (543)
25 KOG0287 Postreplication repair 98.4 1.2E-07 2.5E-12 91.6 3.5 48 156-210 22-69 (442)
26 KOG2177 Predicted E3 ubiquitin 98.3 2.5E-07 5.4E-12 82.9 1.9 45 155-206 11-55 (386)
27 TIGR00570 cdk7 CDK-activating 98.3 9.5E-07 2.1E-11 84.9 5.3 51 155-209 1-54 (309)
28 COG5194 APC11 Component of SCF 98.2 1E-06 2.3E-11 68.9 3.3 29 176-208 52-80 (88)
29 KOG1734 Predicted RING-contain 98.2 3.3E-07 7.1E-12 86.2 0.5 52 155-208 222-280 (328)
30 KOG0804 Cytoplasmic Zn-finger 98.2 6.3E-07 1.4E-11 89.2 1.2 48 155-209 173-222 (493)
31 KOG2164 Predicted E3 ubiquitin 98.1 1.3E-06 2.9E-11 88.1 3.0 49 157-208 186-235 (513)
32 COG5432 RAD18 RING-finger-cont 98.1 1.3E-06 2.7E-11 83.1 2.2 46 157-209 25-70 (391)
33 COG5574 PEX10 RING-finger-cont 98.1 1.5E-06 3.2E-11 81.5 2.5 48 155-208 213-261 (271)
34 KOG1493 Anaphase-promoting com 98.1 1.1E-06 2.3E-11 68.3 0.6 50 156-208 19-80 (84)
35 smart00744 RINGv The RING-vari 98.0 6.7E-06 1.4E-10 58.7 3.9 44 159-205 1-49 (49)
36 KOG0827 Predicted E3 ubiquitin 97.9 3.8E-06 8.3E-11 82.4 2.2 51 157-208 4-55 (465)
37 KOG2930 SCF ubiquitin ligase, 97.9 8.1E-06 1.8E-10 66.8 2.5 51 154-208 43-107 (114)
38 KOG0828 Predicted E3 ubiquitin 97.8 9.9E-06 2.1E-10 81.6 2.4 50 156-208 570-633 (636)
39 KOG0311 Predicted E3 ubiquitin 97.8 2.5E-06 5.3E-11 82.9 -2.2 48 156-208 42-89 (381)
40 KOG0825 PHD Zn-finger protein 97.7 6.9E-06 1.5E-10 86.3 -0.3 54 156-213 122-175 (1134)
41 PF14835 zf-RING_6: zf-RING of 97.6 1.5E-05 3.2E-10 60.1 0.4 48 157-212 7-54 (65)
42 KOG1645 RING-finger-containing 97.6 6.2E-05 1.3E-09 74.5 4.1 50 156-207 3-54 (463)
43 KOG0978 E3 ubiquitin ligase in 97.6 2.8E-05 6.2E-10 81.7 1.8 48 156-209 642-689 (698)
44 PF11793 FANCL_C: FANCL C-term 97.5 1.9E-05 4.2E-10 60.3 -0.8 52 157-208 2-65 (70)
45 KOG1039 Predicted E3 ubiquitin 97.4 8.4E-05 1.8E-09 72.8 2.5 54 155-209 159-221 (344)
46 KOG0824 Predicted E3 ubiquitin 97.4 0.00011 2.4E-09 70.3 2.9 50 156-211 6-55 (324)
47 COG5219 Uncharacterized conser 97.3 0.00012 2.5E-09 78.7 1.9 51 156-208 1468-1522(1525)
48 KOG1941 Acetylcholine receptor 97.3 0.0001 2.2E-09 72.7 1.3 48 156-205 364-412 (518)
49 KOG4265 Predicted E3 ubiquitin 97.1 0.00027 5.9E-09 69.0 2.9 47 157-210 290-337 (349)
50 KOG4159 Predicted E3 ubiquitin 97.1 0.00024 5.1E-09 70.9 2.5 48 156-210 83-130 (398)
51 KOG1785 Tyrosine kinase negati 97.1 0.00014 3.1E-09 71.9 0.7 52 158-214 370-421 (563)
52 PF11789 zf-Nse: Zinc-finger o 96.9 0.00049 1.1E-08 50.7 1.5 44 156-203 10-53 (57)
53 KOG4172 Predicted E3 ubiquitin 96.8 0.00034 7.3E-09 51.4 0.2 50 158-213 8-58 (62)
54 KOG1814 Predicted E3 ubiquitin 96.8 0.0018 3.9E-08 64.4 5.2 71 156-226 183-257 (445)
55 PF10367 Vps39_2: Vacuolar sor 96.7 0.00067 1.5E-08 54.2 1.2 32 156-188 77-108 (109)
56 KOG2660 Locus-specific chromos 96.7 0.00047 1E-08 66.8 0.3 50 156-211 14-63 (331)
57 KOG2879 Predicted E3 ubiquitin 96.7 0.0014 3E-08 62.2 3.4 56 150-209 232-287 (298)
58 KOG0297 TNF receptor-associate 96.7 0.00086 1.9E-08 66.8 2.2 52 155-212 19-70 (391)
59 KOG3039 Uncharacterized conser 96.7 0.0012 2.6E-08 61.9 2.8 52 156-211 220-272 (303)
60 KOG4445 Uncharacterized conser 96.7 0.00056 1.2E-08 65.6 0.6 55 155-209 113-186 (368)
61 COG5152 Uncharacterized conser 96.5 0.0014 3E-08 59.8 2.3 45 158-209 197-241 (259)
62 KOG1940 Zn-finger protein [Gen 96.5 0.0024 5.2E-08 60.9 3.6 57 156-217 157-214 (276)
63 COG5222 Uncharacterized conser 96.1 0.0061 1.3E-07 58.7 4.1 43 158-206 275-318 (427)
64 KOG1813 Predicted E3 ubiquitin 95.9 0.0045 9.8E-08 59.3 2.3 47 158-211 242-288 (313)
65 KOG1571 Predicted E3 ubiquitin 95.8 0.0047 1E-07 60.6 1.9 45 156-210 304-348 (355)
66 PF04641 Rtf2: Rtf2 RING-finge 95.6 0.009 2E-07 56.3 3.2 50 155-209 111-161 (260)
67 KOG4185 Predicted E3 ubiquitin 95.2 0.025 5.4E-07 53.6 4.6 49 157-208 3-54 (296)
68 KOG2114 Vacuolar assembly/sort 95.2 0.017 3.7E-07 62.1 3.8 46 156-210 839-884 (933)
69 KOG1002 Nucleotide excision re 95.2 0.011 2.4E-07 60.8 2.2 50 156-208 535-585 (791)
70 KOG3970 Predicted E3 ubiquitin 95.1 0.033 7.1E-07 51.9 5.0 58 156-214 49-110 (299)
71 KOG1428 Inhibitor of type V ad 95.1 0.03 6.6E-07 63.2 5.3 55 156-211 3485-3546(3738)
72 PF12906 RINGv: RING-variant d 95.0 0.013 2.9E-07 41.4 1.6 42 160-204 1-47 (47)
73 PHA03096 p28-like protein; Pro 94.7 0.019 4.2E-07 55.1 2.3 48 158-206 179-231 (284)
74 KOG1952 Transcription factor N 94.7 0.12 2.6E-06 55.8 8.3 50 155-206 189-244 (950)
75 PF14570 zf-RING_4: RING/Ubox 94.6 0.015 3.2E-07 41.6 0.9 45 160-208 1-47 (48)
76 KOG0827 Predicted E3 ubiquitin 94.5 0.0059 1.3E-07 60.5 -1.8 52 157-212 196-248 (465)
77 PHA02825 LAP/PHD finger-like p 94.4 0.044 9.5E-07 48.4 3.8 48 155-208 6-58 (162)
78 PHA02862 5L protein; Provision 94.4 0.034 7.3E-07 48.5 3.0 46 158-209 3-53 (156)
79 PF05883 Baculo_RING: Baculovi 94.4 0.02 4.4E-07 49.2 1.6 37 157-193 26-68 (134)
80 KOG4275 Predicted E3 ubiquitin 94.3 0.0065 1.4E-07 58.3 -1.9 42 157-209 300-342 (350)
81 PF07800 DUF1644: Protein of u 94.3 0.051 1.1E-06 48.0 3.8 55 156-213 1-95 (162)
82 KOG4739 Uncharacterized protei 94.0 0.019 4.1E-07 53.6 0.6 45 157-208 3-47 (233)
83 PF14447 Prok-RING_4: Prokaryo 93.8 0.025 5.5E-07 41.5 0.9 44 156-208 6-49 (55)
84 KOG4692 Predicted E3 ubiquitin 93.7 0.057 1.2E-06 53.2 3.4 49 152-208 417-466 (489)
85 KOG1001 Helicase-like transcri 93.7 0.032 7E-07 59.4 1.7 45 158-208 455-499 (674)
86 KOG0801 Predicted E3 ubiquitin 93.6 0.021 4.6E-07 50.7 0.2 29 156-184 176-204 (205)
87 COG5175 MOT2 Transcriptional r 93.5 0.096 2.1E-06 51.5 4.6 51 155-208 12-63 (480)
88 KOG0826 Predicted E3 ubiquitin 93.0 0.081 1.7E-06 51.6 3.1 48 155-208 298-345 (357)
89 KOG3268 Predicted E3 ubiquitin 92.9 0.085 1.8E-06 47.6 2.9 53 156-208 164-227 (234)
90 KOG2034 Vacuolar sorting prote 92.7 0.054 1.2E-06 58.6 1.7 36 156-192 816-851 (911)
91 COG5236 Uncharacterized conser 92.6 0.13 2.8E-06 50.8 3.9 50 154-208 58-107 (493)
92 KOG3002 Zn finger protein [Gen 92.4 0.12 2.7E-06 49.9 3.5 46 155-211 46-93 (299)
93 KOG3161 Predicted E3 ubiquitin 92.3 0.051 1.1E-06 57.1 0.8 44 156-208 10-56 (861)
94 KOG4367 Predicted Zn-finger pr 91.8 0.082 1.8E-06 53.4 1.6 35 156-193 3-37 (699)
95 PF08746 zf-RING-like: RING-li 91.2 0.093 2E-06 36.4 0.9 43 160-204 1-43 (43)
96 KOG3800 Predicted E3 ubiquitin 91.0 0.21 4.5E-06 48.0 3.3 46 159-207 2-49 (300)
97 KOG2817 Predicted E3 ubiquitin 90.9 0.17 3.7E-06 50.4 2.8 50 156-206 333-382 (394)
98 KOG2932 E3 ubiquitin ligase in 90.5 0.13 2.9E-06 49.9 1.6 43 158-208 91-133 (389)
99 KOG0298 DEAD box-containing he 90.4 0.11 2.4E-06 58.3 1.0 45 156-206 1152-1196(1394)
100 KOG3039 Uncharacterized conser 88.4 1.2 2.5E-05 42.3 6.0 35 156-193 42-76 (303)
101 PF05290 Baculo_IE-1: Baculovi 88.0 0.53 1.2E-05 40.6 3.2 53 156-211 79-134 (140)
102 PF14446 Prok-RING_1: Prokaryo 87.0 0.59 1.3E-05 34.3 2.6 34 156-189 4-38 (54)
103 KOG0825 PHD Zn-finger protein 86.4 0.58 1.3E-05 50.5 3.2 54 156-209 95-154 (1134)
104 KOG4718 Non-SMC (structural ma 85.7 0.21 4.6E-06 46.1 -0.4 83 117-205 140-223 (235)
105 smart00249 PHD PHD zinc finger 84.8 0.33 7.2E-06 32.2 0.3 46 159-204 1-47 (47)
106 KOG0309 Conserved WD40 repeat- 84.2 0.59 1.3E-05 50.3 2.0 25 175-203 1045-1069(1081)
107 PF10272 Tmpp129: Putative tra 84.0 2.3 4.9E-05 42.3 5.9 29 181-209 314-351 (358)
108 KOG1812 Predicted E3 ubiquitin 82.9 1 2.3E-05 44.9 3.1 48 156-203 145-195 (384)
109 KOG1100 Predicted E3 ubiquitin 81.4 0.53 1.1E-05 43.3 0.4 38 160-208 161-199 (207)
110 COG5183 SSM4 Protein involved 80.4 1.3 2.7E-05 48.2 2.8 50 155-208 10-65 (1175)
111 KOG1829 Uncharacterized conser 78.5 0.78 1.7E-05 48.2 0.5 42 156-204 510-556 (580)
112 COG5220 TFB3 Cdk activating ki 77.7 1.5 3.2E-05 41.5 2.0 46 156-205 9-60 (314)
113 KOG3113 Uncharacterized conser 74.2 2.1 4.5E-05 40.8 2.0 49 156-210 110-159 (293)
114 KOG1815 Predicted E3 ubiquitin 72.3 2.7 5.9E-05 42.6 2.5 37 155-193 68-104 (444)
115 PF03854 zf-P11: P-11 zinc fin 72.1 1.2 2.6E-05 32.0 -0.1 41 159-208 4-45 (50)
116 KOG3053 Uncharacterized conser 71.8 2.4 5.1E-05 40.5 1.8 54 155-208 18-81 (293)
117 PF04710 Pellino: Pellino; In 68.9 1.6 3.4E-05 43.9 0.0 54 157-210 328-402 (416)
118 KOG2066 Vacuolar assembly/sort 68.8 2 4.2E-05 46.6 0.6 45 156-205 783-831 (846)
119 COG5109 Uncharacterized conser 68.1 3.4 7.4E-05 40.5 2.1 49 156-205 335-383 (396)
120 KOG4362 Transcriptional regula 68.0 1.5 3.2E-05 46.9 -0.4 47 156-206 20-66 (684)
121 PF14569 zf-UDP: Zinc-binding 66.9 5.2 0.00011 31.5 2.5 51 155-208 7-61 (80)
122 KOG3899 Uncharacterized conser 65.4 4.6 0.0001 39.3 2.3 32 178-209 325-365 (381)
123 KOG0269 WD40 repeat-containing 65.0 5.2 0.00011 43.3 2.9 44 158-206 780-825 (839)
124 PLN02189 cellulose synthase 63.7 5.9 0.00013 44.3 3.1 52 155-209 32-87 (1040)
125 PLN02436 cellulose synthase A 62.5 6.4 0.00014 44.2 3.1 52 155-209 34-89 (1094)
126 PLN02638 cellulose synthase A 61.8 7.2 0.00016 43.9 3.3 51 155-208 15-69 (1079)
127 KOG1609 Protein involved in mR 59.5 6.3 0.00014 37.0 2.2 50 157-208 78-133 (323)
128 PF05605 zf-Di19: Drought indu 58.8 4.6 9.9E-05 28.8 0.8 39 156-206 1-39 (54)
129 KOG3842 Adaptor protein Pellin 58.4 7.3 0.00016 38.3 2.4 52 156-207 340-412 (429)
130 PF02891 zf-MIZ: MIZ/SP-RING z 58.1 4.9 0.00011 28.6 0.9 46 158-206 3-49 (50)
131 KOG0824 Predicted E3 ubiquitin 57.0 3.5 7.5E-05 40.1 -0.1 48 155-208 103-150 (324)
132 PF10571 UPF0547: Uncharacteri 56.3 5.6 0.00012 24.8 0.8 22 159-182 2-24 (26)
133 PLN02915 cellulose synthase A 54.1 12 0.00025 42.1 3.4 52 155-209 13-68 (1044)
134 PLN02195 cellulose synthase A 54.1 13 0.00029 41.5 3.7 51 156-209 5-59 (977)
135 PF13901 DUF4206: Domain of un 52.3 6.2 0.00013 35.9 0.8 41 156-205 151-196 (202)
136 PLN02400 cellulose synthase 51.2 11 0.00025 42.4 2.7 52 155-209 34-89 (1085)
137 KOG4185 Predicted E3 ubiquitin 51.0 3.4 7.4E-05 39.1 -1.2 47 158-207 208-265 (296)
138 KOG2462 C2H2-type Zn-finger pr 50.3 6 0.00013 38.0 0.4 59 156-214 160-231 (279)
139 KOG2068 MOT2 transcription fac 50.2 9.8 0.00021 37.4 1.8 47 157-208 249-297 (327)
140 PF00628 PHD: PHD-finger; Int 48.3 5.8 0.00013 27.4 -0.0 47 159-205 1-49 (51)
141 PF06906 DUF1272: Protein of u 45.9 31 0.00067 25.6 3.4 46 158-210 6-53 (57)
142 KOG3579 Predicted E3 ubiquitin 45.0 10 0.00022 36.9 1.0 35 156-193 267-305 (352)
143 PF04710 Pellino: Pellino; In 44.8 7.2 0.00016 39.3 0.0 49 156-207 276-337 (416)
144 COG3813 Uncharacterized protei 44.0 22 0.00047 27.8 2.5 43 159-208 7-51 (84)
145 KOG3799 Rab3 effector RIM1 and 43.8 3 6.4E-05 36.3 -2.5 46 156-208 64-117 (169)
146 PF01363 FYVE: FYVE zinc finge 42.6 7.4 0.00016 28.7 -0.3 37 155-191 7-44 (69)
147 KOG3005 GIY-YIG type nuclease 40.7 20 0.00043 34.5 2.2 51 158-208 183-242 (276)
148 cd00065 FYVE FYVE domain; Zinc 39.7 18 0.00039 25.5 1.4 35 158-192 3-38 (57)
149 smart00064 FYVE Protein presen 39.4 22 0.00048 26.1 1.9 37 156-192 9-46 (68)
150 KOG2071 mRNA cleavage and poly 37.5 18 0.00039 38.1 1.6 36 155-190 511-556 (579)
151 PF06844 DUF1244: Protein of u 36.5 23 0.00051 27.1 1.6 13 181-193 11-23 (68)
152 cd00350 rubredoxin_like Rubred 35.9 15 0.00032 23.8 0.4 10 198-207 17-26 (33)
153 KOG2231 Predicted E3 ubiquitin 33.8 29 0.00064 37.3 2.4 48 159-209 2-52 (669)
154 PF10497 zf-4CXXC_R1: Zinc-fin 33.1 58 0.0013 26.7 3.6 50 156-206 6-69 (105)
155 KOG1812 Predicted E3 ubiquitin 32.2 25 0.00055 35.2 1.6 44 157-204 306-351 (384)
156 PF07191 zinc-ribbons_6: zinc- 31.9 2.4 5.3E-05 32.7 -4.4 39 158-208 2-40 (70)
157 PF09986 DUF2225: Uncharacteri 31.4 20 0.00044 32.8 0.7 13 156-168 4-16 (214)
158 PF04423 Rad50_zn_hook: Rad50 30.7 18 0.0004 25.7 0.2 26 187-212 9-34 (54)
159 KOG4218 Nuclear hormone recept 30.0 22 0.00048 35.5 0.7 50 156-206 14-75 (475)
160 PF04216 FdhE: Protein involve 29.9 7.3 0.00016 37.1 -2.6 45 155-207 170-220 (290)
161 KOG2979 Protein involved in DN 27.2 35 0.00076 32.6 1.5 46 157-206 176-221 (262)
162 PF07649 C1_3: C1-like domain; 27.0 43 0.00093 20.9 1.5 29 159-187 2-30 (30)
163 KOG2113 Predicted RNA binding 26.4 41 0.0009 33.2 1.9 44 156-208 342-386 (394)
164 smart00132 LIM Zinc-binding do 25.2 38 0.00083 21.1 1.0 37 159-208 1-37 (39)
165 KOG0802 E3 ubiquitin ligase [P 24.7 35 0.00075 35.6 1.1 42 156-208 478-519 (543)
166 PF07975 C1_4: TFIIH C1-like d 24.5 39 0.00085 24.5 1.0 42 160-205 2-50 (51)
167 KOG2807 RNA polymerase II tran 23.2 53 0.0012 32.6 1.9 45 157-205 330-374 (378)
168 PF13717 zinc_ribbon_4: zinc-r 23.0 45 0.00098 22.1 1.0 11 158-168 3-13 (36)
169 PF14353 CpXC: CpXC protein 22.4 71 0.0015 26.4 2.4 47 158-208 2-48 (128)
170 cd04718 BAH_plant_2 BAH, or Br 22.4 17 0.00037 31.9 -1.4 25 182-206 2-26 (148)
171 COG3492 Uncharacterized protei 22.3 55 0.0012 26.7 1.5 13 181-193 42-54 (104)
172 KOG2169 Zn-finger transcriptio 22.3 93 0.002 33.3 3.7 46 157-209 306-356 (636)
173 PF06937 EURL: EURL protein; 22.0 3.6E+02 0.0078 26.1 7.2 46 156-204 29-76 (285)
174 PF12088 DUF3565: Protein of u 21.9 55 0.0012 24.6 1.4 18 169-186 8-25 (61)
175 smart00734 ZnF_Rad18 Rad18-lik 21.8 86 0.0019 19.3 2.1 9 200-208 3-11 (26)
176 PF13719 zinc_ribbon_5: zinc-r 20.8 53 0.0012 21.8 1.0 11 158-168 3-13 (37)
177 PF13765 PRY: SPRY-associated 20.7 60 0.0013 22.6 1.3 28 236-263 1-28 (49)
178 KOG1356 Putative transcription 20.2 23 0.00049 39.0 -1.3 49 156-205 228-278 (889)
No 1
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.39 E-value=1.3e-13 Score=95.54 Aligned_cols=44 Identities=30% Similarity=0.831 Sum_probs=38.2
Q ss_pred cccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416 158 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 205 (312)
Q Consensus 158 ~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR 205 (312)
..|+||++.|..+..+..|+|||+||.+||.+|+.. ...||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~----~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR----NNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH----SSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh----CCcCCccC
Confidence 369999999986777778999999999999999988 67999996
No 2
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.6e-12 Score=123.54 Aligned_cols=70 Identities=20% Similarity=0.485 Sum_probs=52.0
Q ss_pred CCCHHHHhhcccc-cccCCCCCC-cccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 136 GFNHEKIARSCSR-VSASSSVDM-QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 136 G~~~e~I~~~~~~-~s~s~~~~~-~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
++.+..+..++.. +......+. ..|+||+|.|..++.+++|||+|.||..||+.||.+. ...||+|+...
T Consensus 206 r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~di 277 (348)
T KOG4628|consen 206 RLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRDI 277 (348)
T ss_pred hhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCcC
Confidence 3455555566655 222211111 3999999999999999999999999999999999872 35699998744
No 3
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.14 E-value=2.3e-11 Score=84.14 Aligned_cols=42 Identities=36% Similarity=0.773 Sum_probs=32.5
Q ss_pred cccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCC
Q 021416 160 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 204 (312)
Q Consensus 160 C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvC 204 (312)
|+||+++|. +|+. |+|||+||..||..|+.........||+|
T Consensus 1 CpiC~~~~~-~Pv~--l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFK-DPVS--LPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-S-SEEE---SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhC-Cccc--cCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999 8888 99999999999999997655434789998
No 4
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.13 E-value=4e-11 Score=92.21 Aligned_cols=46 Identities=26% Similarity=0.848 Sum_probs=35.6
Q ss_pred CCccccccccccc----------ccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLS----------ELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 205 (312)
Q Consensus 156 ~~~~C~ICle~f~----------~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR 205 (312)
.+..|+||++.|. +.-.+...+|||.||..||.+|+.. ..+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ----NNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT----SSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc----CCcCCCCC
Confidence 4556999999994 1223445689999999999999987 66999997
No 5
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.99 E-value=3e-10 Score=105.56 Aligned_cols=70 Identities=17% Similarity=0.403 Sum_probs=48.6
Q ss_pred CCCHHHHhhcccccccC----CCCCCcccccccccccccce----eEE-eccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416 136 GFNHEKIARSCSRVSAS----SSVDMQTCGVCSKLLSELCV----VAV-LTCGHLYHADCLENITAEINKYDPACPVCTL 206 (312)
Q Consensus 136 G~~~e~I~~~~~~~s~s----~~~~~~~C~ICle~f~~~~v----v~~-LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~ 206 (312)
|....-|..++...... .......|+||++.+.+.++ +++ ++|||.||.+||.+|+.. ..+||+||.
T Consensus 149 ~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~----~~tCPlCR~ 224 (238)
T PHA02929 149 KNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE----KNTCPVCRT 224 (238)
T ss_pred chhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc----CCCCCCCCC
Confidence 45555666665542111 11246799999998774432 233 469999999999999976 779999998
Q ss_pred CCc
Q 021416 207 GEK 209 (312)
Q Consensus 207 ~~~ 209 (312)
.+.
T Consensus 225 ~~~ 227 (238)
T PHA02929 225 PFI 227 (238)
T ss_pred Eee
Confidence 764
No 6
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.92 E-value=1.4e-09 Score=79.74 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=39.7
Q ss_pred cccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416 158 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 209 (312)
Q Consensus 158 ~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 209 (312)
..|+||++.+. ++++ ++|||+|+..||.+|+.. ...||+|+..+.
T Consensus 2 ~~Cpi~~~~~~-~Pv~--~~~G~v~~~~~i~~~~~~----~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVMK-DPVI--LPSGQTYERRAIEKWLLS----HGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcCC-CCEE--CCCCCEEeHHHHHHHHHH----CCCCCCCcCCCC
Confidence 57999999998 6766 899999999999999987 678999997763
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.89 E-value=1.5e-09 Score=97.84 Aligned_cols=51 Identities=29% Similarity=0.614 Sum_probs=41.3
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhc------------CCCCCCCCCCCCCCc
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEI------------NKYDPACPVCTLGEK 209 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~------------~~~~~~CPvCR~~~~ 209 (312)
+...|+||++.+. ++++ ++|||+||..||..|+... .+....||+||..+.
T Consensus 17 ~~~~CpICld~~~-dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 17 GDFDCNICLDQVR-DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred CccCCccCCCcCC-CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 5678999999987 6766 7899999999999998631 123568999998774
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.88 E-value=8.6e-10 Score=74.57 Aligned_cols=39 Identities=38% Similarity=0.956 Sum_probs=31.6
Q ss_pred cccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCC
Q 021416 160 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 204 (312)
Q Consensus 160 C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvC 204 (312)
|+||++.+. ++ +.+++|||+||.+||.+|++. ...||+|
T Consensus 1 C~iC~~~~~-~~-~~~~~CGH~fC~~C~~~~~~~----~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR-DP-VVVTPCGHSFCKECIEKYLEK----NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S-SE-EEECTTSEEEEHHHHHHHHHC----TSB-TTT
T ss_pred CCCCCCccc-Cc-CEECCCCCchhHHHHHHHHHC----cCCCcCC
Confidence 899999988 44 334899999999999999987 5789998
No 9
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=1.6e-09 Score=102.88 Aligned_cols=50 Identities=26% Similarity=0.636 Sum_probs=43.8
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
....|+||++.|..++.+++|||.|.||..|+++|+.. +...||+||.++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~---y~~~CPvCrt~i 371 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG---YSNKCPVCRTAI 371 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhh---hcccCCccCCCC
Confidence 44689999999987888999999999999999999974 377899999765
No 10
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=1.8e-09 Score=104.94 Aligned_cols=50 Identities=28% Similarity=0.630 Sum_probs=40.5
Q ss_pred CCCcccccccccccccc----------eeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 155 VDMQTCGVCSKLLSELC----------VVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~~----------vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
.++..|.||+|++-..+ ....|||||++|.+|+..|+++ ..+||+||.++
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER----qQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER----QQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh----ccCCCcccCcc
Confidence 47789999998843122 1245999999999999999988 78999999873
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.83 E-value=1.9e-09 Score=76.54 Aligned_cols=47 Identities=28% Similarity=0.710 Sum_probs=37.7
Q ss_pred CcccccccccccccceeEEeccCCc-chHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416 157 MQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKK 210 (312)
Q Consensus 157 ~~~C~ICle~f~~~~vv~~LpCGH~-FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 210 (312)
+..|.||++... . +..+||||. ||..|+..|+.. ...||+||.++..
T Consensus 2 ~~~C~iC~~~~~-~--~~~~pCgH~~~C~~C~~~~~~~----~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENPR-D--VVLLPCGHLCFCEECAERLLKR----KKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSBS-S--EEEETTCEEEEEHHHHHHHHHT----TSBBTTTTBB-SE
T ss_pred cCCCccCCccCC-c--eEEeCCCChHHHHHHhHHhccc----CCCCCcCChhhcC
Confidence 467999999866 3 445899999 999999999985 7899999987753
No 12
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.77 E-value=8.2e-09 Score=69.20 Aligned_cols=44 Identities=25% Similarity=0.734 Sum_probs=34.7
Q ss_pred ccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCC
Q 021416 159 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 207 (312)
Q Consensus 159 ~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~ 207 (312)
.|+||++.+. . .+..++|||.||..|+..|+.. ....||+|+..
T Consensus 1 ~C~iC~~~~~-~-~~~~~~C~H~~c~~C~~~~~~~---~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFR-E-PVVLLPCGHVFCRSCIDKWLKS---GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhh-C-ceEecCCCChhcHHHHHHHHHh---CcCCCCCCCCc
Confidence 4999999984 2 3334569999999999999976 25679999864
No 13
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.76 E-value=6.1e-09 Score=103.19 Aligned_cols=47 Identities=21% Similarity=0.747 Sum_probs=40.9
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 209 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 209 (312)
....|+||++.|. .+++ ++|||.||..||..|+.. ...||+|+..+.
T Consensus 25 ~~l~C~IC~d~~~-~Pvi--tpCgH~FCs~CI~~~l~~----~~~CP~Cr~~~~ 71 (397)
T TIGR00599 25 TSLRCHICKDFFD-VPVL--TSCSHTFCSLCIRRCLSN----QPKCPLCRAEDQ 71 (397)
T ss_pred cccCCCcCchhhh-CccC--CCCCCchhHHHHHHHHhC----CCCCCCCCCccc
Confidence 5678999999998 7776 899999999999999976 568999998764
No 14
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.76 E-value=6.2e-09 Score=82.42 Aligned_cols=51 Identities=22% Similarity=0.550 Sum_probs=38.0
Q ss_pred CCccccccccccc-----------ccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLS-----------ELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 156 ~~~~C~ICle~f~-----------~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
++..|+||...|. +-+.+ .-.|+|.||..||.+|+.... .+..||+||...
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~H~FH~hCI~kWl~~~~-~~~~CPmCR~~w 81 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCSHNFHMHCILKWLSTQS-SKGQCPMCRQPW 81 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCcee-eccCccHHHHHHHHHHHcccc-CCCCCCCcCCee
Confidence 3667888888776 22222 346999999999999998643 267999999765
No 15
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=6.8e-09 Score=98.07 Aligned_cols=47 Identities=23% Similarity=0.588 Sum_probs=40.4
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 209 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 209 (312)
....|.||++.-. ++.. +||||+||..||..|..+ ...||+||..+.
T Consensus 238 a~~kC~LCLe~~~-~pSa--TpCGHiFCWsCI~~w~~e----k~eCPlCR~~~~ 284 (293)
T KOG0317|consen 238 ATRKCSLCLENRS-NPSA--TPCGHIFCWSCILEWCSE----KAECPLCREKFQ 284 (293)
T ss_pred CCCceEEEecCCC-CCCc--CcCcchHHHHHHHHHHcc----ccCCCcccccCC
Confidence 4578999999866 5655 899999999999999988 667999997764
No 16
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.72 E-value=7.3e-09 Score=70.19 Aligned_cols=41 Identities=32% Similarity=0.766 Sum_probs=34.0
Q ss_pred cccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCC
Q 021416 160 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 204 (312)
Q Consensus 160 C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvC 204 (312)
|+||++.+. .++ ..++|||.||..||.+|+... ....||+|
T Consensus 1 C~iC~~~~~-~~~-~~~~C~H~fC~~C~~~~~~~~--~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE-DPV-ILLPCGHSFCRDCLRKWLENS--GSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS-SEE-EETTTSEEEEHHHHHHHHHHT--SSSBTTTT
T ss_pred CCcCCcccc-CCC-EEecCCCcchHHHHHHHHHhc--CCccCCcC
Confidence 899999988 444 348999999999999999852 26779998
No 17
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=8.1e-09 Score=94.91 Aligned_cols=50 Identities=30% Similarity=0.582 Sum_probs=41.9
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 209 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 209 (312)
....|.||||.-+ ++|+ ..|||.||.-||.+||.... ....||+|+..+.
T Consensus 46 ~~FdCNICLd~ak-dPVv--TlCGHLFCWpClyqWl~~~~-~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 46 GFFDCNICLDLAK-DPVV--TLCGHLFCWPCLYQWLQTRP-NSKECPVCKAEVS 95 (230)
T ss_pred CceeeeeeccccC-CCEE--eecccceehHHHHHHHhhcC-CCeeCCccccccc
Confidence 5678999999987 8888 78999999999999998533 3678999987653
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.66 E-value=1.6e-08 Score=70.15 Aligned_cols=44 Identities=27% Similarity=0.762 Sum_probs=36.0
Q ss_pred ccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416 159 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 206 (312)
Q Consensus 159 ~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~ 206 (312)
.|+||.+.|.......+++|||+||..|+..+.. ....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~----~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG----KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcC----CCCCCcCCCC
Confidence 4999999995445566689999999999999882 2678999974
No 19
>PHA02926 zinc finger-like protein; Provisional
Probab=98.65 E-value=1.8e-08 Score=92.39 Aligned_cols=55 Identities=18% Similarity=0.573 Sum_probs=39.4
Q ss_pred CCcccccccccccccc-----eeEEe-ccCCcchHHHHHHHHHhcC--CCCCCCCCCCCCCcc
Q 021416 156 DMQTCGVCSKLLSELC-----VVAVL-TCGHLYHADCLENITAEIN--KYDPACPVCTLGEKK 210 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~-----vv~~L-pCGH~FH~~CI~~Wl~~~~--~~~~~CPvCR~~~~~ 210 (312)
.+..|+||+|..-+.+ ..++| +|+|.||..||..|..... .....||+||..+..
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 5688999998864221 12345 6999999999999997521 124579999987653
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.4e-08 Score=90.06 Aligned_cols=48 Identities=25% Similarity=0.653 Sum_probs=38.9
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
....|+|||+.+.. .+.....|||+||..||..-+.. ...||+|++.+
T Consensus 130 ~~~~CPiCl~~~se-k~~vsTkCGHvFC~~Cik~alk~----~~~CP~C~kkI 177 (187)
T KOG0320|consen 130 GTYKCPICLDSVSE-KVPVSTKCGHVFCSQCIKDALKN----TNKCPTCRKKI 177 (187)
T ss_pred cccCCCceecchhh-ccccccccchhHHHHHHHHHHHh----CCCCCCccccc
Confidence 45789999999983 33223679999999999999987 77899999744
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.61 E-value=3.9e-08 Score=63.61 Aligned_cols=39 Identities=31% Similarity=0.829 Sum_probs=31.3
Q ss_pred cccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCC
Q 021416 160 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 204 (312)
Q Consensus 160 C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvC 204 (312)
|+||++... . ...++|||.||..|+..|+.. ....||+|
T Consensus 1 C~iC~~~~~-~--~~~~~C~H~~c~~C~~~~~~~---~~~~CP~C 39 (39)
T smart00184 1 CPICLEELK-D--PVVLPCGHTFCRSCIRKWLKS---GNNTCPIC 39 (39)
T ss_pred CCcCccCCC-C--cEEecCCChHHHHHHHHHHHh---CcCCCCCC
Confidence 889998843 3 444899999999999999983 25679998
No 22
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.59 E-value=2.6e-08 Score=69.47 Aligned_cols=42 Identities=31% Similarity=0.808 Sum_probs=22.5
Q ss_pred cccccccccc-cceeEEeccCCcchHHHHHHHHHhcCCCCCCCC
Q 021416 160 CGVCSKLLSE-LCVVAVLTCGHLYHADCLENITAEINKYDPACP 202 (312)
Q Consensus 160 C~ICle~f~~-~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CP 202 (312)
|+||.+ |.+ .....+|+|||+|+.+||++++.........||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 762 222344999999999999999986433356777
No 23
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.52 E-value=7.9e-08 Score=73.70 Aligned_cols=63 Identities=25% Similarity=0.380 Sum_probs=44.4
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccchHhHHHHHHHHHH
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSERALKSEME 224 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~kl~~~~l~~el~ 224 (312)
+...|+||.+.+. ++++ ++|||+|.+.||+.|+.. ....||+|+..+......-+..|+..++
T Consensus 3 ~~f~CpIt~~lM~-dPVi--~~~G~tyer~~I~~~l~~---~~~~~P~t~~~l~~~~l~pn~~Lk~~I~ 65 (73)
T PF04564_consen 3 DEFLCPITGELMR-DPVI--LPSGHTYERSAIERWLEQ---NGGTDPFTRQPLSESDLIPNRALKSAIE 65 (73)
T ss_dssp GGGB-TTTSSB-S-SEEE--ETTSEEEEHHHHHHHHCT---TSSB-TTT-SB-SGGGSEE-HHHHHHHH
T ss_pred cccCCcCcCcHhh-Ccee--CCcCCEEcHHHHHHHHHc---CCCCCCCCCCcCCcccceECHHHHHHHH
Confidence 6789999999999 8888 899999999999999976 3678999988776543333444444443
No 24
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=4.7e-08 Score=100.50 Aligned_cols=47 Identities=28% Similarity=0.664 Sum_probs=40.4
Q ss_pred CCcccccccccccccce--eEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCV--VAVLTCGHLYHADCLENITAEINKYDPACPVCTL 206 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~v--v~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~ 206 (312)
....|+||+|.+...+. ...|+|||+||..|+..|+++ ..+||+||.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er----~qtCP~CR~ 338 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER----QQTCPTCRT 338 (543)
T ss_pred cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH----hCcCCcchh
Confidence 46799999999985432 445999999999999999998 789999997
No 25
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.45 E-value=1.2e-07 Score=91.59 Aligned_cols=48 Identities=23% Similarity=0.778 Sum_probs=42.5
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 210 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 210 (312)
+...|.||.++|. .+++ +||||.||.-||..+|.. ++.||.|++++..
T Consensus 22 ~lLRC~IC~eyf~-ip~i--tpCsHtfCSlCIR~~L~~----~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 22 DLLRCGICFEYFN-IPMI--TPCSHTFCSLCIRKFLSY----KPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHhHHHHHhc-Ccee--ccccchHHHHHHHHHhcc----CCCCCceecccch
Confidence 4568999999999 6776 899999999999999987 8999999988754
No 26
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.5e-07 Score=82.90 Aligned_cols=45 Identities=29% Similarity=0.634 Sum_probs=38.4
Q ss_pred CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416 155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 206 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~ 206 (312)
.+...|+||++.|. .+ .+|+|||.||..||..++. ....||.||.
T Consensus 11 ~~~~~C~iC~~~~~-~p--~~l~C~H~~c~~C~~~~~~----~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFR-EP--VLLPCGHNFCRACLTRSWE----GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhh-cC--ccccccchHhHHHHHHhcC----CCcCCcccCC
Confidence 37789999999999 55 4499999999999999886 2678999994
No 27
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.27 E-value=9.5e-07 Score=84.95 Aligned_cols=51 Identities=24% Similarity=0.489 Sum_probs=36.6
Q ss_pred CCCccccccccc-ccccce--eEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416 155 VDMQTCGVCSKL-LSELCV--VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 209 (312)
Q Consensus 155 ~~~~~C~ICle~-f~~~~v--v~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 209 (312)
+++..||||... |. .+. +.+.+|||.||..||+..+..+ ...||+|+..+.
T Consensus 1 md~~~CP~Ck~~~y~-np~~kl~i~~CGH~~C~sCv~~l~~~~---~~~CP~C~~~lr 54 (309)
T TIGR00570 1 MDDQGCPRCKTTKYR-NPSLKLMVNVCGHTLCESCVDLLFVRG---SGSCPECDTPLR 54 (309)
T ss_pred CCCCCCCcCCCCCcc-CcccccccCCCCCcccHHHHHHHhcCC---CCCCCCCCCccc
Confidence 366789999974 33 332 2223799999999999976542 568999987654
No 28
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.21 E-value=1e-06 Score=68.90 Aligned_cols=29 Identities=21% Similarity=0.477 Sum_probs=26.0
Q ss_pred eccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 176 LTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 176 LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
-.|.|.||..||..||.. ...||+|++..
T Consensus 52 G~CnHaFH~HCI~rWL~T----k~~CPld~q~w 80 (88)
T COG5194 52 GVCNHAFHDHCIYRWLDT----KGVCPLDRQTW 80 (88)
T ss_pred EecchHHHHHHHHHHHhh----CCCCCCCCcee
Confidence 359999999999999988 77999999765
No 29
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=3.3e-07 Score=86.21 Aligned_cols=52 Identities=21% Similarity=0.531 Sum_probs=41.8
Q ss_pred CCCcccccccccccccc-------eeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 155 VDMQTCGVCSKLLSELC-------VVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~~-------vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
.++..|+||...+.... .+-.|.|+|+||..||..|...++ ..+||.|+..+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGK--kqtCPYCKekV 280 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGK--KQTCPYCKEKV 280 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecC--CCCCchHHHHh
Confidence 37789999998776332 456799999999999999987655 78999998644
No 30
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.15 E-value=6.3e-07 Score=89.17 Aligned_cols=48 Identities=29% Similarity=0.782 Sum_probs=38.4
Q ss_pred CCCcccccccccccccceeEE--eccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416 155 VDMQTCGVCSKLLSELCVVAV--LTCGHLYHADCLENITAEINKYDPACPVCTLGEK 209 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~~vv~~--LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 209 (312)
.+..+|||||+.+. ..+.++ +.|.|.||..|+..|. ..+||+||+-..
T Consensus 173 tELPTCpVCLERMD-~s~~gi~t~~c~Hsfh~~cl~~w~------~~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMD-SSTTGILTILCNHSFHCSCLMKWW------DSSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcC-ccccceeeeecccccchHHHhhcc------cCcChhhhhhcC
Confidence 37789999999988 444333 4599999999999997 458999997443
No 31
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.3e-06 Score=88.10 Aligned_cols=49 Identities=24% Similarity=0.487 Sum_probs=37.1
Q ss_pred CcccccccccccccceeEEeccCCcchHHHHHHHHHhc-CCCCCCCCCCCCCC
Q 021416 157 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEI-NKYDPACPVCTLGE 208 (312)
Q Consensus 157 ~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~-~~~~~~CPvCR~~~ 208 (312)
...||||++... -++. ..|||+||..||-++|... .+.-..||+|+..+
T Consensus 186 ~~~CPICL~~~~-~p~~--t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I 235 (513)
T KOG2164|consen 186 DMQCPICLEPPS-VPVR--TNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTI 235 (513)
T ss_pred CCcCCcccCCCC-cccc--cccCceeeHHHHHHHHhhhcccCCccCCchhhhc
Confidence 678999998865 3333 4599999999999976644 33456899998644
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.11 E-value=1.3e-06 Score=83.13 Aligned_cols=46 Identities=30% Similarity=0.701 Sum_probs=39.9
Q ss_pred CcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416 157 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 209 (312)
Q Consensus 157 ~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 209 (312)
...|-||-+.|. .++. .+|||.||.-||...|.. ++.||+||....
T Consensus 25 ~lrC~IC~~~i~-ip~~--TtCgHtFCslCIR~hL~~----qp~CP~Cr~~~~ 70 (391)
T COG5432 25 MLRCRICDCRIS-IPCE--TTCGHTFCSLCIRRHLGT----QPFCPVCREDPC 70 (391)
T ss_pred HHHhhhhhheee-ccee--cccccchhHHHHHHHhcC----CCCCccccccHH
Confidence 457999999998 6666 789999999999999987 899999997553
No 33
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.5e-06 Score=81.51 Aligned_cols=48 Identities=25% Similarity=0.488 Sum_probs=38.1
Q ss_pred CCCcccccccccccccceeEEeccCCcchHHHHHH-HHHhcCCCCCCCCCCCCCC
Q 021416 155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLEN-ITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~-Wl~~~~~~~~~CPvCR~~~ 208 (312)
..+..|.||++... .+.. ++|||+||..||-. |..+. ..-||+||..+
T Consensus 213 ~~d~kC~lC~e~~~-~ps~--t~CgHlFC~~Cl~~~~t~~k---~~~CplCRak~ 261 (271)
T COG5574 213 LADYKCFLCLEEPE-VPSC--TPCGHLFCLSCLLISWTKKK---YEFCPLCRAKV 261 (271)
T ss_pred ccccceeeeecccC-Cccc--ccccchhhHHHHHHHHHhhc---cccCchhhhhc
Confidence 35778999999866 4544 89999999999999 88761 33499999765
No 34
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.1e-06 Score=68.32 Aligned_cols=50 Identities=26% Similarity=0.595 Sum_probs=37.4
Q ss_pred CCccccccccccc-----------ccceeEEe-ccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLS-----------ELCVVAVL-TCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 156 ~~~~C~ICle~f~-----------~~~vv~~L-pCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
...+|.||...|. +-|.+ + .|.|.||..||.+|+....+ ...||+||...
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv--~G~C~h~fh~hCI~~wl~~~ts-q~~CPmcRq~~ 80 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLV--WGYCLHAFHAHCILKWLNTPTS-QGQCPMCRQTW 80 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccH--HHHHHHHHHHHHHHHHhcCccc-cccCCcchhee
Confidence 3448888888886 22322 3 49999999999999975443 57899999765
No 35
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=98.01 E-value=6.7e-06 Score=58.73 Aligned_cols=44 Identities=25% Similarity=0.562 Sum_probs=33.6
Q ss_pred ccccccccccccceeEEeccC-----CcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416 159 TCGVCSKLLSELCVVAVLTCG-----HLYHADCLENITAEINKYDPACPVCT 205 (312)
Q Consensus 159 ~C~ICle~f~~~~vv~~LpCG-----H~FH~~CI~~Wl~~~~~~~~~CPvCR 205 (312)
.|-||++... .....+.||. |.+|..|+.+|+.... ...||+|.
T Consensus 1 ~CrIC~~~~~-~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~--~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGD-EGDPLVSPCRCKGSLKYVHQECLERWINESG--NKTCEICK 49 (49)
T ss_pred CccCCCCCCC-CCCeeEeccccCCchhHHHHHHHHHHHHHcC--CCcCCCCC
Confidence 4899998333 3444468985 8999999999998744 55899994
No 36
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=3.8e-06 Score=82.45 Aligned_cols=51 Identities=24% Similarity=0.633 Sum_probs=37.8
Q ss_pred CcccccccccccccceeEEec-cCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 157 MQTCGVCSKLLSELCVVAVLT-CGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 157 ~~~C~ICle~f~~~~vv~~Lp-CGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
...|.||.+.+-....++.+. |||+||..|+.+|+..... +..||+|+..+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps-~R~cpic~ik~ 55 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPS-NRGCPICQIKL 55 (465)
T ss_pred cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCc-cCCCCceeecc
Confidence 357999977766444454454 9999999999999986442 35899998443
No 37
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=8.1e-06 Score=66.82 Aligned_cols=51 Identities=20% Similarity=0.462 Sum_probs=37.2
Q ss_pred CCCCccccccccccc-------------ccc-eeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 154 SVDMQTCGVCSKLLS-------------ELC-VVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 154 ~~~~~~C~ICle~f~-------------~~~-vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
++..+.|+||..-+- ..+ .++--.|.|.||..||.+||+. ...||+|.+.-
T Consensus 43 Di~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlkt----r~vCPLdn~eW 107 (114)
T KOG2930|consen 43 DIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKT----RNVCPLDNKEW 107 (114)
T ss_pred eeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhh----cCcCCCcCcce
Confidence 346678999875432 112 2333459999999999999998 78999997643
No 38
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=9.9e-06 Score=81.64 Aligned_cols=50 Identities=24% Similarity=0.590 Sum_probs=37.0
Q ss_pred CCccccccccccc---ccc-----------eeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLS---ELC-----------VVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 156 ~~~~C~ICle~f~---~~~-----------vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
....|+||+.... .+. .....||.|+||..|+++|... ++..||+||..+
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~---ykl~CPvCR~pL 633 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT---YKLICPVCRCPL 633 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh---hcccCCccCCCC
Confidence 3458999997654 111 1224599999999999999974 256899999765
No 39
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=2.5e-06 Score=82.91 Aligned_cols=48 Identities=23% Similarity=0.467 Sum_probs=37.9
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
.+..|+|||++++ .... +--|+|.||.+||..-+... +..||.||+..
T Consensus 42 ~~v~c~icl~llk-~tmt-tkeClhrfc~~ci~~a~r~g---n~ecptcRk~l 89 (381)
T KOG0311|consen 42 IQVICPICLSLLK-KTMT-TKECLHRFCFDCIWKALRSG---NNECPTCRKKL 89 (381)
T ss_pred hhhccHHHHHHHH-hhcc-cHHHHHHHHHHHHHHHHHhc---CCCCchHHhhc
Confidence 5678999999988 4433 13499999999999988764 67899999633
No 40
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.71 E-value=6.9e-06 Score=86.34 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=45.8
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccchH
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHK 213 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~k 213 (312)
....|++|+..+.+..+....+|+|+||..||+.|... ..+||+||..+.++..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~----aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC----AQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh----cccCchhhhhhheeee
Confidence 55679999998887777777889999999999999987 6799999988765554
No 41
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.62 E-value=1.5e-05 Score=60.13 Aligned_cols=48 Identities=23% Similarity=0.643 Sum_probs=24.1
Q ss_pred CcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccch
Q 021416 157 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTH 212 (312)
Q Consensus 157 ~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~ 212 (312)
...|++|.+.+. .++. ...|.|+||..||..-+. ..||+|..+.+...
T Consensus 7 lLrCs~C~~~l~-~pv~-l~~CeH~fCs~Ci~~~~~------~~CPvC~~Paw~qD 54 (65)
T PF14835_consen 7 LLRCSICFDILK-EPVC-LGGCEHIFCSSCIRDCIG------SECPVCHTPAWIQD 54 (65)
T ss_dssp TTS-SSS-S--S-S-B----SSS--B-TTTGGGGTT------TB-SSS--B-S-SS
T ss_pred hcCCcHHHHHhc-CCce-eccCccHHHHHHhHHhcC------CCCCCcCChHHHHH
Confidence 457999999998 6654 246999999999977543 35999997775433
No 42
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=6.2e-05 Score=74.52 Aligned_cols=50 Identities=28% Similarity=0.642 Sum_probs=38.7
Q ss_pred CCcccccccccccc--cceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSE--LCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 207 (312)
Q Consensus 156 ~~~~C~ICle~f~~--~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~ 207 (312)
...+|+||++.+.- +..+..|.|||.|-..||+.|+. ++....||.|...
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~--k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLG--KKTKMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHh--hhhhhhCcccCCh
Confidence 45689999999872 22233467999999999999995 4457889999743
No 43
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=2.8e-05 Score=81.71 Aligned_cols=48 Identities=23% Similarity=0.666 Sum_probs=38.8
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 209 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 209 (312)
+-..|++|-+-++ +-++ ..|||+||..||+.-+.. +...||.|...|.
T Consensus 642 ~~LkCs~Cn~R~K-d~vI--~kC~H~FC~~Cvq~r~et---RqRKCP~Cn~aFg 689 (698)
T KOG0978|consen 642 ELLKCSVCNTRWK-DAVI--TKCGHVFCEECVQTRYET---RQRKCPKCNAAFG 689 (698)
T ss_pred hceeCCCccCchh-hHHH--HhcchHHHHHHHHHHHHH---hcCCCCCCCCCCC
Confidence 5578999998877 4444 579999999999998876 3678999987664
No 44
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.46 E-value=1.9e-05 Score=60.29 Aligned_cols=52 Identities=25% Similarity=0.528 Sum_probs=23.2
Q ss_pred Cccccccccccc-ccce--eEEe--ccCCcchHHHHHHHHHhcCCC----C---CCCCCCCCCC
Q 021416 157 MQTCGVCSKLLS-ELCV--VAVL--TCGHLYHADCLENITAEINKY----D---PACPVCTLGE 208 (312)
Q Consensus 157 ~~~C~ICle~f~-~~~v--v~~L--pCGH~FH~~CI~~Wl~~~~~~----~---~~CPvCR~~~ 208 (312)
+..|+||...+. .+.. +.-- .|+..||..||.+|+....+. . ..||.|+..+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i 65 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPI 65 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCee
Confidence 457999998755 2222 2111 499999999999999853221 1 2599998655
No 45
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=8.4e-05 Score=72.79 Aligned_cols=54 Identities=20% Similarity=0.639 Sum_probs=40.4
Q ss_pred CCCcccccccccccccce-----eEEec-cCCcchHHHHHHHHHhcC---CCCCCCCCCCCCCc
Q 021416 155 VDMQTCGVCSKLLSELCV-----VAVLT-CGHLYHADCLENITAEIN---KYDPACPVCTLGEK 209 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~~v-----v~~Lp-CGH~FH~~CI~~Wl~~~~---~~~~~CPvCR~~~~ 209 (312)
..+..|.||++... ... .++|| |.|.||..||..|-...+ +-...||+||....
T Consensus 159 s~~k~CGICme~i~-ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETIN-EKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhcc-ccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 36779999999877 333 44566 999999999999985432 11478999997554
No 46
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00011 Score=70.27 Aligned_cols=50 Identities=22% Similarity=0.399 Sum_probs=38.9
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKT 211 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~ 211 (312)
-...|+||+..-. -++. |+|+|.||..||+.-...+ ...|++||+++...
T Consensus 6 ~~~eC~IC~nt~n-~Pv~--l~C~HkFCyiCiKGsy~nd---k~~CavCR~pids~ 55 (324)
T KOG0824|consen 6 KKKECLICYNTGN-CPVN--LYCFHKFCYICIKGSYKND---KKTCAVCRFPIDST 55 (324)
T ss_pred cCCcceeeeccCC-cCcc--ccccchhhhhhhcchhhcC---CCCCceecCCCCcc
Confidence 4568999997755 5555 9999999999999855442 55799999988543
No 47
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.26 E-value=0.00012 Score=78.71 Aligned_cols=51 Identities=25% Similarity=0.576 Sum_probs=38.6
Q ss_pred CCccccccccccc----ccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLS----ELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 156 ~~~~C~ICle~f~----~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
....|+||...+. ..|.-+.-.|.|-||..|+-+|+.... ...||+||..+
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~--~s~CPlCRsei 1522 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA--RSNCPLCRSEI 1522 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC--CCCCCcccccc
Confidence 5568999988776 122222334899999999999998755 77899999654
No 48
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.26 E-value=0.0001 Score=72.71 Aligned_cols=48 Identities=27% Similarity=0.706 Sum_probs=39.4
Q ss_pred CCcccccccccccc-cceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSE-LCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 205 (312)
Q Consensus 156 ~~~~C~ICle~f~~-~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR 205 (312)
-+..|..|.+.+.. +..+..|||.|+||..|+...+.... ..+||.||
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~--~rsCP~Cr 412 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNG--TRSCPNCR 412 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCC--CCCCccHH
Confidence 45689999998863 34566799999999999999996543 77999998
No 49
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00027 Score=68.96 Aligned_cols=47 Identities=26% Similarity=0.594 Sum_probs=37.2
Q ss_pred CcccccccccccccceeEEeccCCc-chHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416 157 MQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKK 210 (312)
Q Consensus 157 ~~~C~ICle~f~~~~vv~~LpCGH~-FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 210 (312)
...|.||+..-. +.+ +|||.|. .|..|.+..--. .+.||+||.++..
T Consensus 290 gkeCVIClse~r-dt~--vLPCRHLCLCs~Ca~~Lr~q----~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 290 GKECVICLSESR-DTV--VLPCRHLCLCSGCAKSLRYQ----TNNCPICRQPIEE 337 (349)
T ss_pred CCeeEEEecCCc-ceE--EecchhhehhHhHHHHHHHh----hcCCCccccchHh
Confidence 568999998866 444 4999998 799999886544 6679999988854
No 50
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00024 Score=70.92 Aligned_cols=48 Identities=31% Similarity=0.675 Sum_probs=41.0
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 210 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 210 (312)
.+..|.||...|- .+++ +||||.||..||++-+.. ...||.||.++..
T Consensus 83 sef~c~vc~~~l~-~pv~--tpcghs~c~~Cl~r~ld~----~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 83 SEFECCVCSRALY-PPVV--TPCGHSFCLECLDRSLDQ----ETECPLCRDELVE 130 (398)
T ss_pred chhhhhhhHhhcC-CCcc--ccccccccHHHHHHHhcc----CCCCccccccccc
Confidence 6778999999988 7777 799999999999996654 7789999987754
No 51
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.11 E-value=0.00014 Score=71.89 Aligned_cols=52 Identities=27% Similarity=0.570 Sum_probs=40.3
Q ss_pred cccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccchHh
Q 021416 158 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKL 214 (312)
Q Consensus 158 ~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~kl 214 (312)
..|-||-|.= ..+.+-||||..|..|+..|..... ...||.||.+++-+..+
T Consensus 370 eLCKICaend---KdvkIEPCGHLlCt~CLa~WQ~sd~--gq~CPFCRcEIKGte~v 421 (563)
T KOG1785|consen 370 ELCKICAEND---KDVKIEPCGHLLCTSCLAAWQDSDE--GQTCPFCRCEIKGTEPV 421 (563)
T ss_pred HHHHHhhccC---CCcccccccchHHHHHHHhhcccCC--CCCCCceeeEeccccce
Confidence 4699998873 3455579999999999999986543 67899999877655443
No 52
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.87 E-value=0.00049 Score=50.72 Aligned_cols=44 Identities=18% Similarity=0.350 Sum_probs=29.0
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPV 203 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPv 203 (312)
-...|||.+..|. +|+. ...|||+|-.+.|.+|+.. .....||+
T Consensus 10 ~~~~CPiT~~~~~-~PV~-s~~C~H~fek~aI~~~i~~--~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFE-DPVK-SKKCGHTFEKEAILQYIQR--NGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-S-SEEE-ESSS--EEEHHHHHHHCTT--TS-EE-SC
T ss_pred eccCCCCcCChhh-CCcC-cCCCCCeecHHHHHHHHHh--cCCCCCCC
Confidence 4578999999999 6655 3479999999999999943 23678998
No 53
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.00034 Score=51.36 Aligned_cols=50 Identities=26% Similarity=0.572 Sum_probs=36.6
Q ss_pred cccccccccccccceeEEeccCCc-chHHHHHHHHHhcCCCCCCCCCCCCCCccchH
Q 021416 158 QTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTHK 213 (312)
Q Consensus 158 ~~C~ICle~f~~~~vv~~LpCGH~-FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~k 213 (312)
..|.||.|.-. +.++ -.|||. .|.+|-.+.++. .+..||+||.+++.+.+
T Consensus 8 dECTICye~pv-dsVl--YtCGHMCmCy~Cg~rl~~~---~~g~CPiCRapi~dvIk 58 (62)
T KOG4172|consen 8 DECTICYEHPV-DSVL--YTCGHMCMCYACGLRLKKA---LHGCCPICRAPIKDVIK 58 (62)
T ss_pred cceeeeccCcc-hHHH--HHcchHHhHHHHHHHHHHc---cCCcCcchhhHHHHHHH
Confidence 67999998754 4444 469997 789998775553 27789999988765443
No 54
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0018 Score=64.43 Aligned_cols=71 Identities=15% Similarity=0.290 Sum_probs=49.4
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHh----cCCCCCCCCCCCCCCccchHhHHHHHHHHHHHH
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAE----INKYDPACPVCTLGEKKTHKLSERALKSEMESK 226 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~----~~~~~~~CPvCR~~~~~~~kl~~~~l~~el~~k 226 (312)
....|.||.+......-...|||+|+||..|+..++.. +......||-|..+.....-.++.++.+++-.+
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g~vKelvg~EL~ar 257 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPGQVKELVGDELFAR 257 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCchHHHHHHHHHHHHH
Confidence 44679999999883355666899999999999997752 222345799888665544445555555555544
No 55
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=96.69 E-value=0.00067 Score=54.20 Aligned_cols=32 Identities=38% Similarity=0.882 Sum_probs=28.1
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHH
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLE 188 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~ 188 (312)
+...|+||...|. ..+..+.||||+||..|+.
T Consensus 77 ~~~~C~vC~k~l~-~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLG-NSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCC-CceEEEeCCCeEEeccccc
Confidence 5677999999998 5778889999999999975
No 56
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.69 E-value=0.00047 Score=66.76 Aligned_cols=50 Identities=26% Similarity=0.590 Sum_probs=40.7
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKT 211 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~ 211 (312)
...+|.+|..+|.+...+ .-|=|.||..||-..+.. ...||.|...+.+.
T Consensus 14 ~~itC~LC~GYliDATTI--~eCLHTFCkSCivk~l~~----~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTI--TECLHTFCKSCIVKYLEE----SKYCPTCDIVIHKT 63 (331)
T ss_pred cceehhhccceeecchhH--HHHHHHHHHHHHHHHHHH----hccCCccceeccCc
Confidence 677999999999843333 569999999999999988 77999998655444
No 57
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0014 Score=62.23 Aligned_cols=56 Identities=25% Similarity=0.507 Sum_probs=40.4
Q ss_pred ccCCCCCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416 150 SASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 209 (312)
Q Consensus 150 s~s~~~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 209 (312)
+.+......+|++|.+.=. .|.+ +.+|||+||.-||..=..... ..+||.|.....
T Consensus 232 sss~~t~~~~C~~Cg~~Pt-iP~~-~~~C~HiyCY~Ci~ts~~~~a--sf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 232 SSSTGTSDTECPVCGEPPT-IPHV-IGKCGHIYCYYCIATSRLWDA--SFTCPLCGENVE 287 (298)
T ss_pred ccccccCCceeeccCCCCC-CCee-eccccceeehhhhhhhhcchh--hcccCccCCCCc
Confidence 3344457889999998865 5544 257999999999998554321 579999976553
No 58
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.68 E-value=0.00086 Score=66.78 Aligned_cols=52 Identities=29% Similarity=0.589 Sum_probs=41.7
Q ss_pred CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccch
Q 021416 155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTH 212 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~ 212 (312)
.+...|+||...+. +++.. ..|||.||..|+..|+.. +..||.|+....+..
T Consensus 19 ~~~l~C~~C~~vl~-~p~~~-~~cgh~fC~~C~~~~~~~----~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 19 DENLLCPICMSVLR-DPVQT-TTCGHRFCAGCLLESLSN----HQKCPVCRQELTQAE 70 (391)
T ss_pred cccccCcccccccc-CCCCC-CCCCCcccccccchhhcc----CcCCcccccccchhh
Confidence 36689999999998 44442 579999999999999987 789999987664433
No 59
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.0012 Score=61.92 Aligned_cols=52 Identities=27% Similarity=0.409 Sum_probs=43.4
Q ss_pred CCcccccccccccccceeEEe-ccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 021416 156 DMQTCGVCSKLLSELCVVAVL-TCGHLYHADCLENITAEINKYDPACPVCTLGEKKT 211 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~L-pCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~ 211 (312)
....|+||.+.|.+.-..++| +|||+|+.+|++..+.. +..||+|-.+.++.
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~----D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK----DMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc----cccccCCCCcCccc
Confidence 557899999999966556666 69999999999999877 88999998777543
No 60
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=96.66 E-value=0.00056 Score=65.63 Aligned_cols=55 Identities=25% Similarity=0.501 Sum_probs=42.2
Q ss_pred CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhc-------------------CCCCCCCCCCCCCCc
Q 021416 155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEI-------------------NKYDPACPVCTLGEK 209 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~-------------------~~~~~~CPvCR~~~~ 209 (312)
.....|.|||.-|.+.+...+.+|-|.||..|+..+|..- ......||+||..++
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 4556899999999988878889999999999998766421 112457999997553
No 61
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.54 E-value=0.0014 Score=59.80 Aligned_cols=45 Identities=29% Similarity=0.561 Sum_probs=38.1
Q ss_pred cccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416 158 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 209 (312)
Q Consensus 158 ~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 209 (312)
..|.||-+.|. .+++ ..|||.||..|...-++. ...|-+|-+...
T Consensus 197 F~C~iCKkdy~-spvv--t~CGH~FC~~Cai~~y~k----g~~C~~Cgk~t~ 241 (259)
T COG5152 197 FLCGICKKDYE-SPVV--TECGHSFCSLCAIRKYQK----GDECGVCGKATY 241 (259)
T ss_pred eeehhchhhcc-chhh--hhcchhHHHHHHHHHhcc----CCcceecchhhc
Confidence 58999999999 7777 789999999999887766 678999976543
No 62
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=96.47 E-value=0.0024 Score=60.94 Aligned_cols=57 Identities=26% Similarity=0.656 Sum_probs=44.6
Q ss_pred CCccccccccccc-ccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccchHhHHH
Q 021416 156 DMQTCGVCSKLLS-ELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSER 217 (312)
Q Consensus 156 ~~~~C~ICle~f~-~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~kl~~~ 217 (312)
....||||.+.+. ..+.+.+++|||.-|..|++..... .++||+|.+ ..++...++.
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~----~y~CP~C~~-~~d~~~~~~~ 214 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE----GYTCPICSK-PGDMSHYFRK 214 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhcc----CCCCCcccc-hHHHHHHHHH
Confidence 4455999997765 3455666999999999999998776 689999998 7777766654
No 63
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.10 E-value=0.0061 Score=58.72 Aligned_cols=43 Identities=28% Similarity=0.682 Sum_probs=35.2
Q ss_pred cccccccccccccceeEEec-cCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416 158 QTCGVCSKLLSELCVVAVLT-CGHLYHADCLENITAEINKYDPACPVCTL 206 (312)
Q Consensus 158 ~~C~ICle~f~~~~vv~~Lp-CGH~FH~~CI~~Wl~~~~~~~~~CPvCR~ 206 (312)
..|+.|..++. .++- .+ |||.||.+||+.-|... +..||.|..
T Consensus 275 LkCplc~~Llr-np~k--T~cC~~~fc~eci~~al~ds---Df~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLR-NPMK--TPCCGHTFCDECIGTALLDS---DFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhh-Cccc--CccccchHHHHHHhhhhhhc---cccCCCccc
Confidence 78999999988 5554 44 99999999999976542 789999964
No 64
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.0045 Score=59.32 Aligned_cols=47 Identities=26% Similarity=0.525 Sum_probs=39.2
Q ss_pred cccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 021416 158 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKT 211 (312)
Q Consensus 158 ~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~ 211 (312)
+.|-||.+.|. .+|+ ..|||.||..|...-++. ...|++|-+...-.
T Consensus 242 f~c~icr~~f~-~pVv--t~c~h~fc~~ca~~~~qk----~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 242 FKCFICRKYFY-RPVV--TKCGHYFCEVCALKPYQK----GEKCYVCSQQTHGS 288 (313)
T ss_pred ccccccccccc-cchh--hcCCceeehhhhcccccc----CCcceecccccccc
Confidence 46999999999 8888 789999999998887765 67899998655433
No 65
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.0047 Score=60.58 Aligned_cols=45 Identities=27% Similarity=0.552 Sum_probs=32.8
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 210 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 210 (312)
....|.||++... . ...+||||+-| |..--.. .+.||+||..+..
T Consensus 304 ~p~lcVVcl~e~~-~--~~fvpcGh~cc--ct~cs~~-----l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 304 QPDLCVVCLDEPK-S--AVFVPCGHVCC--CTLCSKH-----LPQCPVCRQRIRL 348 (355)
T ss_pred CCCceEEecCCcc-c--eeeecCCcEEE--chHHHhh-----CCCCchhHHHHHH
Confidence 4568999999877 3 44489999977 7655332 5569999976643
No 66
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.63 E-value=0.009 Score=56.25 Aligned_cols=50 Identities=22% Similarity=0.432 Sum_probs=38.8
Q ss_pred CCCccccccccccccc-ceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416 155 VDMQTCGVCSKLLSEL-CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 209 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~-~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 209 (312)
.....|||+...|... ..+.+.+|||+|...+|.+.- . ...||+|-.++.
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~----~~~Cp~c~~~f~ 161 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-K----SKKCPVCGKPFT 161 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-c----cccccccCCccc
Confidence 4677999999999633 345556899999999999973 2 457999987764
No 67
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.025 Score=53.60 Aligned_cols=49 Identities=24% Similarity=0.604 Sum_probs=38.8
Q ss_pred Cccccccccccccc---ceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 157 MQTCGVCSKLLSEL---CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 157 ~~~C~ICle~f~~~---~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
...|-||-+.|... ...++|.|||.+|..|+...+.. ....||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~---~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN---SRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcC---ceeeccCCCCcc
Confidence 45799999999843 24566889999999999987764 256789999875
No 68
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.21 E-value=0.017 Score=62.05 Aligned_cols=46 Identities=35% Similarity=0.842 Sum_probs=34.6
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 210 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 210 (312)
....|.+|--.+. .|.|- ..|||.||.+|++. . ...||-|+-....
T Consensus 839 q~skCs~C~~~Ld-lP~Vh-F~CgHsyHqhC~e~---~----~~~CP~C~~e~~~ 884 (933)
T KOG2114|consen 839 QVSKCSACEGTLD-LPFVH-FLCGHSYHQHCLED---K----EDKCPKCLPELRG 884 (933)
T ss_pred eeeeecccCCccc-cceee-eecccHHHHHhhcc---C----cccCCccchhhhh
Confidence 3458999998887 66553 56999999999981 1 5679999864433
No 69
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=95.19 E-value=0.011 Score=60.75 Aligned_cols=50 Identities=22% Similarity=0.628 Sum_probs=38.3
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHh-cCCCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAE-INKYDPACPVCTLGE 208 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~-~~~~~~~CPvCR~~~ 208 (312)
+...|.+|-+.-+ +.++ ..|.|.||+-||..++.. ....+.+||+|-.++
T Consensus 535 ~~~~C~lc~d~ae-d~i~--s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 535 GEVECGLCHDPAE-DYIE--SSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CceeecccCChhh-hhHh--hhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence 6678999998866 5555 679999999999888753 122367999997644
No 70
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.033 Score=51.91 Aligned_cols=58 Identities=26% Similarity=0.482 Sum_probs=43.3
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCC----CCCCCCCCCCCCccchHh
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINK----YDPACPVCTLGEKKTHKL 214 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~----~~~~CPvCR~~~~~~~kl 214 (312)
....|..|...+..++.+ .|.|=|+||.+|++.|...-.. ..+.||-|..++.....+
T Consensus 49 Y~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~Nl 110 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINL 110 (299)
T ss_pred CCCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccc
Confidence 556899999998866655 4889999999999999763221 256799998776544333
No 71
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.08 E-value=0.03 Score=63.18 Aligned_cols=55 Identities=22% Similarity=0.467 Sum_probs=38.5
Q ss_pred CCccccccc-ccccccceeEEeccCCcchHHHHHHHHHhcCC------CCCCCCCCCCCCccc
Q 021416 156 DMQTCGVCS-KLLSELCVVAVLTCGHLYHADCLENITAEINK------YDPACPVCTLGEKKT 211 (312)
Q Consensus 156 ~~~~C~ICl-e~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~------~~~~CPvCR~~~~~~ 211 (312)
.++.|.||. |.+. ......|.|+|+||..|...-|...=. .-..||+|...++.+
T Consensus 3485 ~DDmCmICFTE~L~-AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALS-AAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred cCceEEEEehhhhC-CCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 567899998 4455 333446899999999999887653110 124799998777543
No 72
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=95.00 E-value=0.013 Score=41.36 Aligned_cols=42 Identities=26% Similarity=0.564 Sum_probs=27.1
Q ss_pred cccccccccccceeEEeccCC-----cchHHHHHHHHHhcCCCCCCCCCC
Q 021416 160 CGVCSKLLSELCVVAVLTCGH-----LYHADCLENITAEINKYDPACPVC 204 (312)
Q Consensus 160 C~ICle~f~~~~vv~~LpCGH-----~FH~~CI~~Wl~~~~~~~~~CPvC 204 (312)
|-||++.-.+.+ .-+.||+- ..|..||.+|+.... ...|++|
T Consensus 1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~--~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESG--NRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT---SB-TTT
T ss_pred CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcC--CCcCCCC
Confidence 679998766444 23368753 579999999998743 6679988
No 73
>PHA03096 p28-like protein; Provisional
Probab=94.68 E-value=0.019 Score=55.07 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=35.0
Q ss_pred cccccccccccccc----eeEEec-cCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416 158 QTCGVCSKLLSELC----VVAVLT-CGHLYHADCLENITAEINKYDPACPVCTL 206 (312)
Q Consensus 158 ~~C~ICle~f~~~~----vv~~Lp-CGH~FH~~CI~~Wl~~~~~~~~~CPvCR~ 206 (312)
..|.||++...... --+.|+ |.|.||..||..|-.+.. ...+||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~-~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESL-YKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhh-hcccCccccc
Confidence 67999998765332 233576 999999999999987643 3556777764
No 74
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=94.66 E-value=0.12 Score=55.76 Aligned_cols=50 Identities=22% Similarity=0.580 Sum_probs=37.8
Q ss_pred CCCcccccccccccccceeEEec---cCCcchHHHHHHHHHhcCC---CCCCCCCCCC
Q 021416 155 VDMQTCGVCSKLLSELCVVAVLT---CGHLYHADCLENITAEINK---YDPACPVCTL 206 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~~vv~~Lp---CGH~FH~~CI~~Wl~~~~~---~~~~CPvCR~ 206 (312)
.+...|.||.+.+.....+ .. |=|+||..||..|.....+ ..-.||.|..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~--WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPV--WSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred cCceEEEEeeeeccccCCc--eecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 4677899999998744444 44 6699999999999875332 2457999974
No 75
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.58 E-value=0.015 Score=41.64 Aligned_cols=45 Identities=24% Similarity=0.490 Sum_probs=21.3
Q ss_pred cccccccccccceeEEec--cCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 160 CGVCSKLLSELCVVAVLT--CGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 160 C~ICle~f~~~~vv~~Lp--CGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
|++|.+.+...+ ...+| ||+..|..|...-+.. ....||-||.+.
T Consensus 1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~---~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILEN---EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTS---S-SB-TTT--B-
T ss_pred CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhc---cCCCCCCCCCCC
Confidence 789999885332 33355 8999999998876642 267899999654
No 76
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.0059 Score=60.55 Aligned_cols=52 Identities=23% Similarity=0.448 Sum_probs=41.7
Q ss_pred Cccccccccccccc-ceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccch
Q 021416 157 MQTCGVCSKLLSEL-CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTH 212 (312)
Q Consensus 157 ~~~C~ICle~f~~~-~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~ 212 (312)
...|+||.+.|+.. +.+..+-|||.||.+||.+|+.. ...||-|+..+.+..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~----~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT----KRKLPSCRRELPKNG 248 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH----HHHhHHHHhhhhhhh
Confidence 45799999998844 45555789999999999999987 557999998775444
No 77
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.44 E-value=0.044 Score=48.44 Aligned_cols=48 Identities=21% Similarity=0.504 Sum_probs=35.6
Q ss_pred CCCcccccccccccccceeEEeccCC-----cchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 155 VDMQTCGVCSKLLSELCVVAVLTCGH-----LYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~~vv~~LpCGH-----~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
..+..|=||.+.-. +.. -||.. .-|.+|++.|+...+ ...|++|..++
T Consensus 6 ~~~~~CRIC~~~~~--~~~--~PC~CkGs~k~VH~sCL~rWi~~s~--~~~CeiC~~~Y 58 (162)
T PHA02825 6 LMDKCCWICKDEYD--VVT--NYCNCKNENKIVHKECLEEWINTSK--NKSCKICNGPY 58 (162)
T ss_pred CCCCeeEecCCCCC--Ccc--CCcccCCCchHHHHHHHHHHHhcCC--CCcccccCCeE
Confidence 46778999987743 222 57655 459999999998643 77899998644
No 78
>PHA02862 5L protein; Provisional
Probab=94.42 E-value=0.034 Score=48.48 Aligned_cols=46 Identities=17% Similarity=0.426 Sum_probs=34.5
Q ss_pred cccccccccccccceeEEeccCC-----cchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416 158 QTCGVCSKLLSELCVVAVLTCGH-----LYHADCLENITAEINKYDPACPVCTLGEK 209 (312)
Q Consensus 158 ~~C~ICle~f~~~~vv~~LpCGH-----~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 209 (312)
..|=||.+.-. +.+ -||.. .-|.+|+++|+... ....|++|+.++.
T Consensus 3 diCWIC~~~~~--e~~--~PC~C~GS~K~VHq~CL~~WIn~S--~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCD--ERN--NFCGCNEEYKVVHIKCMQLWINYS--KKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCC--CCc--ccccccCcchhHHHHHHHHHHhcC--CCcCccCCCCeEE
Confidence 57999998743 222 57754 58999999999754 3779999997653
No 79
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.40 E-value=0.02 Score=49.17 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=27.8
Q ss_pred CcccccccccccccceeEEeccC------CcchHHHHHHHHHh
Q 021416 157 MQTCGVCSKLLSELCVVAVLTCG------HLYHADCLENITAE 193 (312)
Q Consensus 157 ~~~C~ICle~f~~~~vv~~LpCG------H~FH~~CI~~Wl~~ 193 (312)
...|.||++.+.+..-+..++|| |.||.+|+..|-..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 56799999998862333346675 77999999999543
No 80
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.26 E-value=0.0065 Score=58.31 Aligned_cols=42 Identities=29% Similarity=0.702 Sum_probs=30.9
Q ss_pred CcccccccccccccceeEEeccCCc-chHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416 157 MQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEK 209 (312)
Q Consensus 157 ~~~C~ICle~f~~~~vv~~LpCGH~-FH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 209 (312)
...|.||++.-. +-+. |+|||. -|.+|-.. -..|||||+-+.
T Consensus 300 ~~LC~ICmDaP~-DCvf--LeCGHmVtCt~CGkr--------m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPR-DCVF--LECGHMVTCTKCGKR--------MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCc-ceEE--eecCcEEeehhhccc--------cccCchHHHHHH
Confidence 568999999865 4455 899996 57778543 347999995543
No 81
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.26 E-value=0.051 Score=48.01 Aligned_cols=55 Identities=27% Similarity=0.526 Sum_probs=36.7
Q ss_pred CCcccccccccccccceeEEecc------------CCc-chHHHHHHHHHhcCC--------------------------
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTC------------GHL-YHADCLENITAEINK-------------------------- 196 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpC------------GH~-FH~~CI~~Wl~~~~~-------------------------- 196 (312)
++.+|+||+|.-. +.|+ |-| +-. -|..||+++-+...+
T Consensus 1 ed~~CpICme~PH-NAVL--LlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (162)
T PF07800_consen 1 EDVTCPICMEHPH-NAVL--LLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQE 77 (162)
T ss_pred CCccCceeccCCC-ceEE--EEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccc
Confidence 4678999999855 4444 444 322 477899998663221
Q ss_pred -CCCCCCCCCCCCccchH
Q 021416 197 -YDPACPVCTLGEKKTHK 213 (312)
Q Consensus 197 -~~~~CPvCR~~~~~~~k 213 (312)
....||+||..++.+..
T Consensus 78 ~~~L~CPLCRG~V~GWtv 95 (162)
T PF07800_consen 78 QPELACPLCRGEVKGWTV 95 (162)
T ss_pred cccccCccccCceeceEE
Confidence 14579999998876554
No 82
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.95 E-value=0.019 Score=53.58 Aligned_cols=45 Identities=22% Similarity=0.592 Sum_probs=31.7
Q ss_pred CcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 157 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 157 ~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
-..|..|...=. ......+.|+|+||..|...-. ...||+|++.+
T Consensus 3 ~VhCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~------~~~C~lCkk~i 47 (233)
T KOG4739|consen 3 FVHCNKCFRFPS-QDPFFLTACRHVFCEPCLKASS------PDVCPLCKKSI 47 (233)
T ss_pred eEEeccccccCC-CCceeeeechhhhhhhhcccCC------cccccccccee
Confidence 346887865544 4555567899999999976532 23899999754
No 83
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.82 E-value=0.025 Score=41.51 Aligned_cols=44 Identities=30% Similarity=0.569 Sum_probs=31.8
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
....|-.|... +.+-.++||||+.+..|.+-+- -.-||+|-.++
T Consensus 6 ~~~~~~~~~~~---~~~~~~~pCgH~I~~~~f~~~r------YngCPfC~~~~ 49 (55)
T PF14447_consen 6 PEQPCVFCGFV---GTKGTVLPCGHLICDNCFPGER------YNGCPFCGTPF 49 (55)
T ss_pred cceeEEEcccc---ccccccccccceeeccccChhh------ccCCCCCCCcc
Confidence 45667777765 3344458999999999976643 34699997665
No 84
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.71 E-value=0.057 Score=53.24 Aligned_cols=49 Identities=18% Similarity=0.341 Sum_probs=38.0
Q ss_pred CCCCCCcccccccccccccceeEE-eccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 152 SSSVDMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 152 s~~~~~~~C~ICle~f~~~~vv~~-LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
.+..++..|+||.. +++.++ .||+|.-|..||.+.+.. .+.|=.|+..+
T Consensus 417 lp~sEd~lCpICyA----~pi~Avf~PC~H~SC~~CI~qHlmN----~k~CFfCktTv 466 (489)
T KOG4692|consen 417 LPDSEDNLCPICYA----GPINAVFAPCSHRSCYGCITQHLMN----CKRCFFCKTTV 466 (489)
T ss_pred CCCcccccCcceec----ccchhhccCCCCchHHHHHHHHHhc----CCeeeEeccee
Confidence 34458889999963 344443 589999999999999987 77899997655
No 85
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.65 E-value=0.032 Score=59.37 Aligned_cols=45 Identities=24% Similarity=0.701 Sum_probs=34.7
Q ss_pred cccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 158 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 158 ~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
..|.||++ .. ..++ ..|||.||.+|+..-+.... ...||+||..+
T Consensus 455 ~~c~ic~~-~~-~~~i--t~c~h~~c~~c~~~~i~~~~--~~~~~~cr~~l 499 (674)
T KOG1001|consen 455 HWCHICCD-LD-SFFI--TRCGHDFCVECLKKSIQQSE--NAPCPLCRNVL 499 (674)
T ss_pred cccccccc-cc-ccee--ecccchHHHHHHHhcccccc--CCCCcHHHHHH
Confidence 78999999 33 4444 78999999999999776543 44799998544
No 86
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.021 Score=50.70 Aligned_cols=29 Identities=31% Similarity=0.533 Sum_probs=26.9
Q ss_pred CCcccccccccccccceeEEeccCCcchH
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHA 184 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~ 184 (312)
+...|.||||+|..++.++.|||=.+||.
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEEEeec
Confidence 66799999999999999999999999996
No 87
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.54 E-value=0.096 Score=51.47 Aligned_cols=51 Identities=20% Similarity=0.386 Sum_probs=34.1
Q ss_pred CCCcccccccccccccce-eEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 155 VDMQTCGVCSKLLSELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~~v-v~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
.+++.|+.|++.+...+. ..--+||...|.-|-...-+. .+..||-||...
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~---lngrcpacrr~y 63 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN---LNGRCPACRRKY 63 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhh---ccCCChHhhhhc
Confidence 355569999998763322 212368988888886664332 367899999644
No 88
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=0.081 Score=51.63 Aligned_cols=48 Identities=23% Similarity=0.375 Sum_probs=37.1
Q ss_pred CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
.+...|+||+..-. ++.+ .-.-|.+||..||.+.+.. ...||+=..+.
T Consensus 298 ~~~~~CpvClk~r~-Nptv-l~vSGyVfCY~Ci~~Yv~~----~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQ-NPTV-LEVSGYVFCYPCIFSYVVN----YGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccC-CCce-EEecceEEeHHHHHHHHHh----cCCCCccCCcc
Confidence 36779999998876 4433 1336999999999999987 77899876544
No 89
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.87 E-value=0.085 Score=47.63 Aligned_cols=53 Identities=23% Similarity=0.538 Sum_probs=36.6
Q ss_pred CCcccccccccccccce----eEEeccCCcchHHHHHHHHHhcCCC-------CCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCV----VAVLTCGHLYHADCLENITAEINKY-------DPACPVCTLGE 208 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~v----v~~LpCGH~FH~~CI~~Wl~~~~~~-------~~~CPvCR~~~ 208 (312)
+...|.||..+--++.. -.-+.||..||.-|+..||+..-.. -..||.|..++
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pi 227 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPI 227 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcc
Confidence 55689999865433322 2236799999999999999743211 13699998765
No 90
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.74 E-value=0.054 Score=58.57 Aligned_cols=36 Identities=31% Similarity=0.625 Sum_probs=29.0
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHH
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITA 192 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~ 192 (312)
.+..|.+|...|...+ -.+.||||.||.+||.+-..
T Consensus 816 p~d~C~~C~~~ll~~p-F~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 816 PQDSCDHCGRPLLIKP-FYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred CccchHHhcchhhcCc-ceeeeccchHHHHHHHHHHH
Confidence 5678999998887343 44579999999999998654
No 91
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.60 E-value=0.13 Score=50.77 Aligned_cols=50 Identities=22% Similarity=0.537 Sum_probs=36.4
Q ss_pred CCCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 154 SVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 154 ~~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
+.+...|.||-+-+. -+.++||+|..|..|.-..-.-- ....||+||...
T Consensus 58 DEen~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY--~~K~C~~CrTE~ 107 (493)
T COG5236 58 DEENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALY--MQKGCPLCRTET 107 (493)
T ss_pred ccccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHH--hccCCCcccccc
Confidence 347789999998865 34558999999999977632211 166899998643
No 92
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.37 E-value=0.12 Score=49.92 Aligned_cols=46 Identities=33% Similarity=0.738 Sum_probs=35.6
Q ss_pred CCCcccccccccccccceeEEecc--CCcchHHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 021416 155 VDMQTCGVCSKLLSELCVVAVLTC--GHLYHADCLENITAEINKYDPACPVCTLGEKKT 211 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~~vv~~LpC--GH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~ 211 (312)
.+...||||.+.+. .+ + ..| ||.-|..|-.+- ...||.||.++..+
T Consensus 46 ~~lleCPvC~~~l~-~P-i--~QC~nGHlaCssC~~~~-------~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLS-PP-I--FQCDNGHLACSSCRTKV-------SNKCPTCRLPIGNI 93 (299)
T ss_pred hhhccCchhhccCc-cc-c--eecCCCcEehhhhhhhh-------cccCCccccccccH
Confidence 47789999999988 33 3 467 899999997542 55799999888644
No 93
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.34 E-value=0.051 Score=57.11 Aligned_cols=44 Identities=27% Similarity=0.628 Sum_probs=33.4
Q ss_pred CCcccccccccccc---cceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSE---LCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 156 ~~~~C~ICle~f~~---~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
+...|.||+..|.. .++. |.|||+.|..|++... +.+|| |.+..
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvs--l~cghtic~~c~~~ly------n~scp-~~~De 56 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVS--LQCGHTICGHCVQLLY------NASCP-TKRDE 56 (861)
T ss_pred HHhhchHHHHHHHHHhcCccc--ccccchHHHHHHHhHh------hccCC-CCccc
Confidence 55689999877762 3444 7899999999998865 45799 87644
No 94
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=91.78 E-value=0.082 Score=53.45 Aligned_cols=35 Identities=26% Similarity=0.599 Sum_probs=30.5
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHh
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAE 193 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~ 193 (312)
++..|+||...|. ++++ |+|||..|..|...-+..
T Consensus 3 eelkc~vc~~f~~-epii--l~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 3 EELKCPVCGSFYR-EPII--LPCSHNLCQACARNILVQ 37 (699)
T ss_pred ccccCceehhhcc-CceE--eecccHHHHHHHHhhccc
Confidence 6788999999998 7888 999999999999876543
No 95
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.24 E-value=0.093 Score=36.43 Aligned_cols=43 Identities=23% Similarity=0.668 Sum_probs=22.4
Q ss_pred cccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCC
Q 021416 160 CGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 204 (312)
Q Consensus 160 C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvC 204 (312)
|.+|.++...+..-..-.|+=.+|..|++.++.... ...||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~--~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS--NPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S--S-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC--CCCCcCC
Confidence 678888876333221124888999999999987633 3479988
No 96
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.00 E-value=0.21 Score=48.05 Aligned_cols=46 Identities=22% Similarity=0.527 Sum_probs=33.7
Q ss_pred cccccc-ccccccce-eEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCC
Q 021416 159 TCGVCS-KLLSELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTLG 207 (312)
Q Consensus 159 ~C~ICl-e~f~~~~v-v~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~ 207 (312)
.|++|. +.|..... ..+-+|||..|..|++..+..+ ...||.|...
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g---~~~CpeC~~i 49 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLG---PAQCPECMVI 49 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcC---CCCCCcccch
Confidence 599997 44542333 3334799999999999988763 6789999753
No 97
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.94 E-value=0.17 Score=50.44 Aligned_cols=50 Identities=24% Similarity=0.483 Sum_probs=38.5
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 206 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~ 206 (312)
....|||=.+.-.+......|.|||+...+-|.+....+. ....||+|-.
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~-~sfKCPYCP~ 382 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGS-QSFKCPYCPV 382 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCC-eeeeCCCCCc
Confidence 3468999887766555566699999999999999876532 2578999953
No 98
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=90.52 E-value=0.13 Score=49.95 Aligned_cols=43 Identities=21% Similarity=0.635 Sum_probs=28.6
Q ss_pred cccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 158 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 158 ~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
-.|--|-..+..-. +.+||.|+||.+|... .. .+.||.|--.+
T Consensus 91 HfCd~Cd~PI~IYG--RmIPCkHvFCl~CAr~--~~----dK~Cp~C~d~V 133 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYG--RMIPCKHVFCLECARS--DS----DKICPLCDDRV 133 (389)
T ss_pred EeecccCCcceeee--cccccchhhhhhhhhc--Cc----cccCcCcccHH
Confidence 35777765443111 3379999999999754 12 67899996433
No 99
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=90.42 E-value=0.11 Score=58.32 Aligned_cols=45 Identities=24% Similarity=0.543 Sum_probs=37.8
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 206 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~ 206 (312)
+...|.||++.+.....+ ..|||.||..|+..|+.. ...||+|..
T Consensus 1152 ~~~~c~ic~dil~~~~~I--~~cgh~~c~~c~~~~l~~----~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGI--AGCGHEPCCRCDELWLYA----SSRCPICKS 1196 (1394)
T ss_pred cccchHHHHHHHHhcCCe--eeechhHhhhHHHHHHHH----hccCcchhh
Confidence 556999999998844434 579999999999999988 788999973
No 100
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.36 E-value=1.2 Score=42.33 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=30.3
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHh
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAE 193 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~ 193 (312)
+-..|..||..+. +|++ .+=||+|+++||-+.+..
T Consensus 42 ~FdcCsLtLqPc~-dPvi--t~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 42 PFDCCSLTLQPCR-DPVI--TPDGYLFDREAILEYILA 76 (303)
T ss_pred Ccceeeeeccccc-CCcc--CCCCeeeeHHHHHHHHHH
Confidence 5568999999998 8888 788999999999997654
No 101
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.98 E-value=0.53 Score=40.61 Aligned_cols=53 Identities=26% Similarity=0.558 Sum_probs=38.7
Q ss_pred CCcccccccccccccceeEEec---cCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 021416 156 DMQTCGVCSKLLSELCVVAVLT---CGHLYHADCLENITAEINKYDPACPVCTLGEKKT 211 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~Lp---CGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~ 211 (312)
....|.||.|.-.+..-+ -| ||...|..|--..|+... ..+.||+|+..++..
T Consensus 79 ~lYeCnIC~etS~ee~FL--KPneCCgY~iCn~Cya~LWK~~~-~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETSAEERFL--KPNECCGYSICNACYANLWKFCN-LYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCcccccchhhcC--CcccccchHHHHHHHHHHHHHcc-cCCCCCccccccccc
Confidence 567899999986632222 13 999999999988665433 478999999877543
No 102
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=87.00 E-value=0.59 Score=34.27 Aligned_cols=34 Identities=35% Similarity=0.717 Sum_probs=25.0
Q ss_pred CCcccccccccccc-cceeEEeccCCcchHHHHHH
Q 021416 156 DMQTCGVCSKLLSE-LCVVAVLTCGHLYHADCLEN 189 (312)
Q Consensus 156 ~~~~C~ICle~f~~-~~vv~~LpCGH~FH~~CI~~ 189 (312)
....|++|.+.|++ ++++.--.||-.||++|-+.
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 45679999999963 44443334999999999544
No 103
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=86.44 E-value=0.58 Score=50.51 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=37.0
Q ss_pred CCcccccccccccc-cceeEEec---cCCcchHHHHHHHHHhc--CCCCCCCCCCCCCCc
Q 021416 156 DMQTCGVCSKLLSE-LCVVAVLT---CGHLYHADCLENITAEI--NKYDPACPVCTLGEK 209 (312)
Q Consensus 156 ~~~~C~ICle~f~~-~~vv~~Lp---CGH~FH~~CI~~Wl~~~--~~~~~~CPvCR~~~~ 209 (312)
+..+|.||...|.. .+-..++| |+|.||..||..|.... ....-.|++|..-+.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 56789999888874 11222345 99999999999998642 223456788875443
No 104
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=85.68 E-value=0.21 Score=46.11 Aligned_cols=83 Identities=18% Similarity=0.431 Sum_probs=50.9
Q ss_pred HHhhhcccccccccCC-cccCCCHHHHhhcccccccCCCCCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcC
Q 021416 117 SELMATSHKERWSFDS-ESLGFNHEKIARSCSRVSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEIN 195 (312)
Q Consensus 117 eeLlal~ererws~~~-e~~G~~~e~I~~~~~~~s~s~~~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~ 195 (312)
|||+.--.+-.|-+.. ..+++....|..+..-...........|.+|..+.- ..++--.||=.||..|++..+++
T Consensus 140 E~lLqkf~q~gwf~e~eg~ftl~~ralaELe~YL~s~y~dnlk~Cn~Ch~LvI--qg~rCg~c~i~~h~~c~qty~q~-- 215 (235)
T KOG4718|consen 140 EELLQKFIQMGWFMEVEGRFTLGPRALAELEFYLSSNYADNLKNCNLCHCLVI--QGIRCGSCNIQYHRGCIQTYLQR-- 215 (235)
T ss_pred HHHHHHHHHhchhheecceEEEchHHHHHHHHHHHhhhHHHHHHHhHhHHHhh--eeeccCcccchhhhHHHHHHhcc--
Confidence 3444333333455443 345666666655543322222235668999998755 22322457778999999999987
Q ss_pred CCCCCCCCCC
Q 021416 196 KYDPACPVCT 205 (312)
Q Consensus 196 ~~~~~CPvCR 205 (312)
...||.|.
T Consensus 216 --~~~cphc~ 223 (235)
T KOG4718|consen 216 --RDICPHCG 223 (235)
T ss_pred --cCcCCchh
Confidence 67899994
No 105
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.21 E-value=0.59 Score=50.29 Aligned_cols=25 Identities=32% Similarity=0.709 Sum_probs=20.8
Q ss_pred EeccCCcchHHHHHHHHHhcCCCCCCCCC
Q 021416 175 VLTCGHLYHADCLENITAEINKYDPACPV 203 (312)
Q Consensus 175 ~LpCGH~FH~~CI~~Wl~~~~~~~~~CPv 203 (312)
-+.|||+-|..|...|+.. .-.||-
T Consensus 1045 Cg~C~Hv~H~sc~~eWf~~----gd~Cps 1069 (1081)
T KOG0309|consen 1045 CGTCGHVGHTSCMMEWFRT----GDVCPS 1069 (1081)
T ss_pred hccccccccHHHHHHHHhc----CCcCCC
Confidence 3679999999999999987 447874
No 107
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=84.04 E-value=2.3 Score=42.32 Aligned_cols=29 Identities=17% Similarity=0.391 Sum_probs=22.2
Q ss_pred cchHHHHHHHHHhcCC---------CCCCCCCCCCCCc
Q 021416 181 LYHADCLENITAEINK---------YDPACPVCTLGEK 209 (312)
Q Consensus 181 ~FH~~CI~~Wl~~~~~---------~~~~CPvCR~~~~ 209 (312)
..|.+|+-+|+...+. ..-.||.||..+.
T Consensus 314 mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 314 MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 3588999999986553 2458999998774
No 108
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.86 E-value=1 Score=44.94 Aligned_cols=48 Identities=25% Similarity=0.502 Sum_probs=32.1
Q ss_pred CCccccccc-ccccccceeEEeccCCcchHHHHHHHHHhcC--CCCCCCCC
Q 021416 156 DMQTCGVCS-KLLSELCVVAVLTCGHLYHADCLENITAEIN--KYDPACPV 203 (312)
Q Consensus 156 ~~~~C~ICl-e~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~--~~~~~CPv 203 (312)
....|.||. +.........++.|+|.||.+|+.+.+.... .....||.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~ 195 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPH 195 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCC
Confidence 467899999 4444323333567999999999999887431 12455654
No 109
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.38 E-value=0.53 Score=43.25 Aligned_cols=38 Identities=32% Similarity=0.690 Sum_probs=26.7
Q ss_pred cccccccccccceeEEeccCCc-chHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 160 CGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 160 C~ICle~f~~~~vv~~LpCGH~-FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
|-+|.+. .-.+..|||.|. +|..|-.. ...||+|+...
T Consensus 161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~--------~~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGER---EATVLLLPCRHLCLCGICDES--------LRICPICRSPK 199 (207)
T ss_pred ceecCcC---CceEEeecccceEeccccccc--------CccCCCCcChh
Confidence 8888766 334666899875 88888543 34699998543
No 110
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=80.41 E-value=1.3 Score=48.20 Aligned_cols=50 Identities=18% Similarity=0.451 Sum_probs=35.8
Q ss_pred CCCccccccccc-ccccceeEEeccCCc-----chHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 155 VDMQTCGVCSKL-LSELCVVAVLTCGHL-----YHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 155 ~~~~~C~ICle~-f~~~~vv~~LpCGH~-----FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
.|...|-||..+ ..+++.- -||... .|.+|+-+|+.-.. ...|-+|..+.
T Consensus 10 ~d~~~CRICr~e~~~d~pLf--hPCKC~GSIkYiH~eCL~eW~~~s~--~~kCdiChy~~ 65 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLF--HPCKCSGSIKYIHRECLMEWMECSG--TKKCDICHYEY 65 (1175)
T ss_pred ccchhceeecCCCCCCCcCc--ccccccchhHHHHHHHHHHHHhcCC--Ccceeeeccee
Confidence 366899999844 4434433 477543 89999999997543 67899998644
No 111
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=78.45 E-value=0.78 Score=48.16 Aligned_cols=42 Identities=26% Similarity=0.678 Sum_probs=27.7
Q ss_pred CCccccccccc-----ccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCC
Q 021416 156 DMQTCGVCSKL-----LSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 204 (312)
Q Consensus 156 ~~~~C~ICle~-----f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvC 204 (312)
....|.||... |....+.+-..||++||..|+.. . ...||.|
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~----s~~CPrC 556 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---K----SPCCPRC 556 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---c----CCCCCch
Confidence 34578888521 32234455567999999999754 2 4459999
No 112
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=77.65 E-value=1.5 Score=41.51 Aligned_cols=46 Identities=24% Similarity=0.537 Sum_probs=33.7
Q ss_pred CCccccccc-ccccccceeEEe--c-cCCcchHHHHHHHHHhcCCCCCCCC--CCC
Q 021416 156 DMQTCGVCS-KLLSELCVVAVL--T-CGHLYHADCLENITAEINKYDPACP--VCT 205 (312)
Q Consensus 156 ~~~~C~ICl-e~f~~~~vv~~L--p-CGH~FH~~CI~~Wl~~~~~~~~~CP--vCR 205 (312)
.+..||||. +.|- .|.+..| | |=|..|..|++..+..+ ...|| -|.
T Consensus 9 ~d~~CPvCksDrYL-nPdik~linPECyHrmCESCvdRIFs~G---pAqCP~~gC~ 60 (314)
T COG5220 9 EDRRCPVCKSDRYL-NPDIKILINPECYHRMCESCVDRIFSRG---PAQCPYKGCG 60 (314)
T ss_pred hcccCCcccccccc-CCCeEEEECHHHHHHHHHHHHHHHhcCC---CCCCCCccHH
Confidence 556899998 4455 3433333 5 99999999999988764 55799 774
No 113
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.21 E-value=2.1 Score=40.78 Aligned_cols=49 Identities=20% Similarity=0.413 Sum_probs=35.0
Q ss_pred CCcccccccccccccce-eEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416 156 DMQTCGVCSKLLSELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK 210 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~v-v~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 210 (312)
....|+|=.-.+...-. .+..+|||+|-..-+.+.- ...|++|...+..
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik------as~C~~C~a~y~~ 159 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK------ASVCHVCGAAYQE 159 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh------hccccccCCcccc
Confidence 45689998877763333 3335799999999888753 4589999876543
No 114
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=72.25 E-value=2.7 Score=42.57 Aligned_cols=37 Identities=22% Similarity=0.533 Sum_probs=30.1
Q ss_pred CCCcccccccccccccceeEEeccCCcchHHHHHHHHHh
Q 021416 155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAE 193 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~ 193 (312)
.....|.||.+.+.. .+..+.|||.||..|....+..
T Consensus 68 ~~~~~c~ic~~~~~~--~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDG--EIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcc--hhhhcCCCcHHHHHHHHHHhhh
Confidence 356789999999873 4545789999999999998864
No 115
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=72.07 E-value=1.2 Score=31.99 Aligned_cols=41 Identities=22% Similarity=0.547 Sum_probs=23.9
Q ss_pred ccccccccccccceeEEeccC-CcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 159 TCGVCSKLLSELCVVAVLTCG-HLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 159 ~C~ICle~f~~~~vv~~LpCG-H~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
.|--|.-. ...+ +.|. |..|..|+.-.+.. ...||+|.+++
T Consensus 4 nCKsCWf~---~k~L--i~C~dHYLCl~CLt~ml~~----s~~C~iC~~~L 45 (50)
T PF03854_consen 4 NCKSCWFA---NKGL--IKCSDHYLCLNCLTLMLSR----SDRCPICGKPL 45 (50)
T ss_dssp ---SS-S-----SSE--EE-SS-EEEHHHHHHT-SS----SSEETTTTEE-
T ss_pred cChhhhhc---CCCe--eeecchhHHHHHHHHHhcc----ccCCCcccCcC
Confidence 45666533 2223 5686 99999999999876 77899998655
No 116
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.81 E-value=2.4 Score=40.47 Aligned_cols=54 Identities=22% Similarity=0.394 Sum_probs=37.3
Q ss_pred CCCcccccccccccccceeE-Eecc-----CCcchHHHHHHHHHhcCCC----CCCCCCCCCCC
Q 021416 155 VDMQTCGVCSKLLSELCVVA-VLTC-----GHLYHADCLENITAEINKY----DPACPVCTLGE 208 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~~vv~-~LpC-----GH~FH~~CI~~Wl~~~~~~----~~~CPvCR~~~ 208 (312)
+.+..|=||...=++..... +-|| .|--|..||..|+.+++.. .-.||.|+.+.
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 46678999987655333221 2476 3679999999999876542 34799998544
No 117
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=68.85 E-value=1.6 Score=43.86 Aligned_cols=54 Identities=20% Similarity=0.423 Sum_probs=0.0
Q ss_pred Cccccccccccc----------------ccceeEEeccCCcchHHHHHHHHHhc-----CCCCCCCCCCCCCCcc
Q 021416 157 MQTCGVCSKLLS----------------ELCVVAVLTCGHLYHADCLENITAEI-----NKYDPACPVCTLGEKK 210 (312)
Q Consensus 157 ~~~C~ICle~f~----------------~~~vv~~LpCGH~FH~~CI~~Wl~~~-----~~~~~~CPvCR~~~~~ 210 (312)
...|++|+..=. ..+..+..||||+-=.....-|-+.. ...+..||.|-..+.-
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 568999985421 12334457899998888888886521 1134689999876643
No 118
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.77 E-value=2 Score=46.55 Aligned_cols=45 Identities=27% Similarity=0.572 Sum_probs=31.5
Q ss_pred CCccccccccccc-cc---ceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLS-EL---CVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 205 (312)
Q Consensus 156 ~~~~C~ICle~f~-~~---~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR 205 (312)
.+..|.-|.+... .+ ..+.++.|||+||..|+..-... +. |-.|-
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~----~~-~~~~~ 831 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLR----NA-CNIES 831 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHh----cc-cChhh
Confidence 3458999987644 12 44566899999999999886654 22 66664
No 119
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=68.10 E-value=3.4 Score=40.53 Aligned_cols=49 Identities=22% Similarity=0.486 Sum_probs=36.3
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 205 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR 205 (312)
....|||=-+.-.+......|.|||+.-.+-+...-+.+. ....||.|-
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~-~~FKCPYCP 383 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGV-LSFKCPYCP 383 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCc-EEeeCCCCC
Confidence 4468999777665444444589999999999988766433 367899995
No 120
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=67.98 E-value=1.5 Score=46.89 Aligned_cols=47 Identities=19% Similarity=0.566 Sum_probs=35.9
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 206 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~ 206 (312)
-...|+||...+. .++. +.|-|.|+..|+..-+..... ...||+|+.
T Consensus 20 k~lEc~ic~~~~~-~p~~--~kc~~~~l~~~~n~~f~~~~~-~~~~~lc~~ 66 (684)
T KOG4362|consen 20 KILECPICLEHVK-EPSL--LKCDHIFLKFCLNKLFESKKG-PKQCALCKS 66 (684)
T ss_pred hhccCCceeEEee-ccch--hhhhHHHHhhhhhceeeccCc-cccchhhhh
Confidence 4467999999888 4544 789999999999986654221 567999984
No 121
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=66.87 E-value=5.2 Score=31.55 Aligned_cols=51 Identities=25% Similarity=0.453 Sum_probs=22.5
Q ss_pred CCCccccccccccc---ccce-eEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 155 VDMQTCGVCSKLLS---ELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 155 ~~~~~C~ICle~f~---~~~v-v~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
.....|.||.+... ++.+ ++.--|+--.|+.|.+-=.+++ ...||.|+...
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg---~q~CpqCkt~y 61 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEG---NQVCPQCKTRY 61 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS----SB-TTT--B-
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcC---cccccccCCCc
Confidence 46778999998865 2332 3333588889999998765553 77899998544
No 122
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.35 E-value=4.6 Score=39.30 Aligned_cols=32 Identities=25% Similarity=0.521 Sum_probs=23.9
Q ss_pred cCCcchHHHHHHHHHhcCC---------CCCCCCCCCCCCc
Q 021416 178 CGHLYHADCLENITAEINK---------YDPACPVCTLGEK 209 (312)
Q Consensus 178 CGH~FH~~CI~~Wl~~~~~---------~~~~CPvCR~~~~ 209 (312)
|.-.+|.+|+.+|+...+. ....||.||+.+.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 5566889999999875442 2568999998764
No 123
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=64.96 E-value=5.2 Score=43.27 Aligned_cols=44 Identities=25% Similarity=0.461 Sum_probs=30.3
Q ss_pred cccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCC--CCC
Q 021416 158 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPV--CTL 206 (312)
Q Consensus 158 ~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPv--CR~ 206 (312)
..|.+|-..+. +-.+---.|||.-|.+|+.+|+.. ...||. |-.
T Consensus 780 ~~CtVC~~vi~-G~~~~c~~C~H~gH~sh~~sw~~~----~s~ca~~~C~~ 825 (839)
T KOG0269|consen 780 AKCTVCDLVIR-GVDVWCQVCGHGGHDSHLKSWFFK----ASPCAKSICPH 825 (839)
T ss_pred cCceeecceee-eeEeecccccccccHHHHHHHHhc----CCCCccccCCc
Confidence 46888876655 222211239999999999999986 556766 643
No 124
>PLN02189 cellulose synthase
Probab=63.72 E-value=5.9 Score=44.34 Aligned_cols=52 Identities=29% Similarity=0.517 Sum_probs=35.1
Q ss_pred CCCccccccccccc---ccce-eEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416 155 VDMQTCGVCSKLLS---ELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 209 (312)
Q Consensus 155 ~~~~~C~ICle~f~---~~~v-v~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 209 (312)
.....|.||.|.+. ++.. ++.--||---|+.|.+-=-++ .+..||.|+...+
T Consensus 32 ~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~e---g~q~CpqCkt~Y~ 87 (1040)
T PLN02189 32 LDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERRE---GTQNCPQCKTRYK 87 (1040)
T ss_pred ccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhc---CCccCcccCCchh
Confidence 35668999999875 2333 333348888999999543322 3789999986553
No 125
>PLN02436 cellulose synthase A
Probab=62.45 E-value=6.4 Score=44.22 Aligned_cols=52 Identities=29% Similarity=0.475 Sum_probs=35.2
Q ss_pred CCCccccccccccc---ccce-eEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416 155 VDMQTCGVCSKLLS---ELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 209 (312)
Q Consensus 155 ~~~~~C~ICle~f~---~~~v-v~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 209 (312)
...+.|.||.|... +++. ++.--||---|+.|.+-=-++ .+..||.|+...+
T Consensus 34 ~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~e---g~~~Cpqckt~Y~ 89 (1094)
T PLN02436 34 LSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERRE---GNQACPQCKTRYK 89 (1094)
T ss_pred cCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhc---CCccCcccCCchh
Confidence 35669999999874 3333 333347888999999543322 3789999986553
No 126
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=61.84 E-value=7.2 Score=43.85 Aligned_cols=51 Identities=22% Similarity=0.385 Sum_probs=34.7
Q ss_pred CCCccccccccccc---ccce-eEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 155 VDMQTCGVCSKLLS---ELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 155 ~~~~~C~ICle~f~---~~~v-v~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
...+.|.||.|... +++. ++.--||---|+.|.+-=-++ .+..||.|+...
T Consensus 15 ~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~e---G~q~CPqCktrY 69 (1079)
T PLN02638 15 GGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKD---GNQSCPQCKTKY 69 (1079)
T ss_pred cCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhc---CCccCCccCCch
Confidence 35679999999875 2332 333457777999999542222 378999998544
No 127
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=59.55 E-value=6.3 Score=37.01 Aligned_cols=50 Identities=20% Similarity=0.412 Sum_probs=34.4
Q ss_pred Ccccccccccccccc-eeEEeccC-----CcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 157 MQTCGVCSKLLSELC-VVAVLTCG-----HLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 157 ~~~C~ICle~f~~~~-vv~~LpCG-----H~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
+..|-||.+...... .....||. +..|..|++.|+.... ...|.+|....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~--~~~CeiC~~~~ 133 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKG--NITCEICKSFF 133 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhcccc--Ceeeecccccc
Confidence 578999997654111 02235764 4579999999997433 78999998644
No 128
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=58.81 E-value=4.6 Score=28.83 Aligned_cols=39 Identities=31% Similarity=0.653 Sum_probs=22.2
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 206 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~ 206 (312)
+...||.|.+.|. ...+ +.| |.+.-... .....||+|..
T Consensus 1 ~~f~CP~C~~~~~-~~~L----~~H-----~~~~H~~~--~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFS-ESSL----VEH-----CEDEHRSE--SKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccC-HHHH----HHH-----HHhHCcCC--CCCccCCCchh
Confidence 3568999999665 2222 223 33332222 22678999975
No 129
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=58.40 E-value=7.3 Score=38.34 Aligned_cols=52 Identities=19% Similarity=0.431 Sum_probs=33.1
Q ss_pred CCccccccccccc---------------cc-ceeEEeccCCcchHHHHHHHHHhc-----CCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLS---------------EL-CVVAVLTCGHLYHADCLENITAEI-----NKYDPACPVCTLG 207 (312)
Q Consensus 156 ~~~~C~ICle~f~---------------~~-~vv~~LpCGH~FH~~CI~~Wl~~~-----~~~~~~CPvCR~~ 207 (312)
....||+|+.+=. .+ +..+.-||||+.-..=..-|-+.. ...+..||.|-..
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~ 412 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQ 412 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhh
Confidence 3568999986511 12 223446899997777777776531 1246789999643
No 130
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=58.13 E-value=4.9 Score=28.61 Aligned_cols=46 Identities=24% Similarity=0.414 Sum_probs=20.1
Q ss_pred cccccccccccccceeEEeccCCcchHHHHHHHHHhcC-CCCCCCCCCCC
Q 021416 158 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEIN-KYDPACPVCTL 206 (312)
Q Consensus 158 ~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~-~~~~~CPvCR~ 206 (312)
..|+|....+. .| ++...|.|.-|.+ ++.|+.... .....||+|.+
T Consensus 3 L~CPls~~~i~-~P-~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIR-IP-VRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-S-SE-EEETT--SS--EE-HHHHHHHHHHS---B-TTT--
T ss_pred eeCCCCCCEEE-eC-ccCCcCcccceEC-HHHHHHHhhccCCeECcCCcC
Confidence 46999988876 44 4445699985443 334544211 12467999975
No 131
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.98 E-value=3.5 Score=40.15 Aligned_cols=48 Identities=23% Similarity=0.375 Sum_probs=36.3
Q ss_pred CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
.+...|-||...|...... --|+|-|+..|...|... ...||.|+...
T Consensus 103 ~~~~~~~~~~g~l~vpt~~--qg~w~qf~~~~p~~~~~~----~~~~~d~~~~~ 150 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRI--QGCWHQFCYVCPKSNFAM----GNDCPDCRGKI 150 (324)
T ss_pred CCccceeeeeeeEEecccc--cCceeeeeecCCchhhhh----hhccchhhcCc
Confidence 3677899999887722211 239999999999999987 56799998543
No 132
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=56.34 E-value=5.6 Score=24.78 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=10.9
Q ss_pred ccccccccccccceeEEec-cCCcc
Q 021416 159 TCGVCSKLLSELCVVAVLT-CGHLY 182 (312)
Q Consensus 159 ~C~ICle~f~~~~vv~~Lp-CGH~F 182 (312)
.||-|...+...... =| |||.|
T Consensus 2 ~CP~C~~~V~~~~~~--Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKF--CPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCc--CCCCCCCC
Confidence 477776665411111 23 66665
No 133
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=54.14 E-value=12 Score=42.13 Aligned_cols=52 Identities=31% Similarity=0.563 Sum_probs=35.5
Q ss_pred CCCccccccccccc---ccc-eeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416 155 VDMQTCGVCSKLLS---ELC-VVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 209 (312)
Q Consensus 155 ~~~~~C~ICle~f~---~~~-vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 209 (312)
...+.|.||.|... +++ -++.--|+--.|+.|.+-=.++ .+..||.|+...+
T Consensus 13 ~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~---g~~~cp~c~t~y~ 68 (1044)
T PLN02915 13 ADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSE---GNQCCPQCNTRYK 68 (1044)
T ss_pred CCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhc---CCccCCccCCchh
Confidence 46778999999875 222 2333457777999999543322 3779999986553
No 134
>PLN02195 cellulose synthase A
Probab=54.10 E-value=13 Score=41.46 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=35.1
Q ss_pred CCccccccccccc---ccc-eeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416 156 DMQTCGVCSKLLS---ELC-VVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 209 (312)
Q Consensus 156 ~~~~C~ICle~f~---~~~-vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 209 (312)
....|.||.+... +++ -++.--||---|+.|.+- -.+. .+..||.|+...+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyey-er~e--g~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEY-EIKE--GRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCCCccccchhhh-hhhc--CCccCCccCCccc
Confidence 4568999999765 222 244445888899999954 3222 3789999986654
No 135
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=52.33 E-value=6.2 Score=35.89 Aligned_cols=41 Identities=22% Similarity=0.647 Sum_probs=27.8
Q ss_pred CCccccccccc-----ccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKL-----LSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 205 (312)
Q Consensus 156 ~~~~C~ICle~-----f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR 205 (312)
-...|-||.+. |....+++--.|+-+||..|..+ ..||-|.
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~ 196 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCA 196 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcH
Confidence 45689999742 23224444456999999999752 2599994
No 136
>PLN02400 cellulose synthase
Probab=51.22 E-value=11 Score=42.39 Aligned_cols=52 Identities=23% Similarity=0.419 Sum_probs=35.1
Q ss_pred CCCccccccccccc---ccce-eEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416 155 VDMQTCGVCSKLLS---ELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK 209 (312)
Q Consensus 155 ~~~~~C~ICle~f~---~~~v-v~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~ 209 (312)
...+.|.||.|... +++. ++.--|+---|+.|.+-=-+ ..+..||.|+...+
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERk---eGnq~CPQCkTrYk 89 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERK---DGTQCCPQCKTRYR 89 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecc---cCCccCcccCCccc
Confidence 35679999999875 2332 33345777799999854222 23789999986553
No 137
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=50.98 E-value=3.4 Score=39.08 Aligned_cols=47 Identities=30% Similarity=0.693 Sum_probs=36.0
Q ss_pred ccccccccccccc---ceeEEec--------cCCcchHHHHHHHHHhcCCCCCCCCCCCCC
Q 021416 158 QTCGVCSKLLSEL---CVVAVLT--------CGHLYHADCLENITAEINKYDPACPVCTLG 207 (312)
Q Consensus 158 ~~C~ICle~f~~~---~vv~~Lp--------CGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~ 207 (312)
..|.||...|... .+.+++. |||..|..|++.-+... ...||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~---~~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQA---GIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHh---hhcCCcccce
Confidence 5799999888822 2334466 99999999999987653 3689999864
No 138
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=50.30 E-value=6 Score=38.00 Aligned_cols=59 Identities=15% Similarity=0.278 Sum_probs=40.9
Q ss_pred CCccccccccccccccee------EEeccCCcchHHHHHH-HHHhcCC------CCCCCCCCCCCCccchHh
Q 021416 156 DMQTCGVCSKLLSELCVV------AVLTCGHLYHADCLEN-ITAEINK------YDPACPVCTLGEKKTHKL 214 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv------~~LpCGH~FH~~CI~~-Wl~~~~~------~~~~CPvCR~~~~~~~kl 214 (312)
-...|.+|-..|...+.+ -.|+|-..+|..-... ||.++.. .-+.||.|.+.+-+...|
T Consensus 160 ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNL 231 (279)
T KOG2462|consen 160 KAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNL 231 (279)
T ss_pred ccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHH
Confidence 556899999998744432 2367777777666654 9886543 246899999988776654
No 139
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=50.21 E-value=9.8 Score=37.40 Aligned_cols=47 Identities=26% Similarity=0.472 Sum_probs=32.7
Q ss_pred CcccccccccccccceeEEec--cCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 157 MQTCGVCSKLLSELCVVAVLT--CGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 157 ~~~C~ICle~f~~~~vv~~Lp--CGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
-..|+||.+.....+. -.|| ||+.-|..|+..-... +..||.||.+.
T Consensus 249 ~~s~p~~~~~~~~~d~-~~lP~~~~~~~~l~~~~t~~~~----~~~~~~~rk~~ 297 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDS-NFLPCPCGFRLCLFCHKTISDG----DGRCPGCRKPY 297 (327)
T ss_pred CCCCCCCCCccccccc-ccccccccccchhhhhhccccc----CCCCCccCCcc
Confidence 3689999987742222 2244 7888788887775544 78899999554
No 140
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=48.35 E-value=5.8 Score=27.44 Aligned_cols=47 Identities=26% Similarity=0.552 Sum_probs=30.1
Q ss_pred ccccccccccccceeEEeccCCcchHHHHHHHHHh--cCCCCCCCCCCC
Q 021416 159 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAE--INKYDPACPVCT 205 (312)
Q Consensus 159 ~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~--~~~~~~~CPvCR 205 (312)
.|.||......+..+.=-.|+-.||..|+..-... .......||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 48999985444444433358999999999874431 111256788774
No 141
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=45.94 E-value=31 Score=25.62 Aligned_cols=46 Identities=28% Similarity=0.559 Sum_probs=31.7
Q ss_pred cccccccccccccceeEEeccC--CcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416 158 QTCGVCSKLLSELCVVAVLTCG--HLYHADCLENITAEINKYDPACPVCTLGEKK 210 (312)
Q Consensus 158 ~~C~ICle~f~~~~vv~~LpCG--H~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~ 210 (312)
..|-.|-..|..+...+ .-|. ..||.+|.+..| ...||.|...+..
T Consensus 6 pnCE~C~~dLp~~s~~A-~ICSfECTFC~~C~e~~l------~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDSPEA-YICSFECTFCADCAETML------NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCCCcc-eEEeEeCcccHHHHHHHh------cCcCcCCCCcccc
Confidence 46888887776333222 3365 579999999987 3479999876643
No 142
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.00 E-value=10 Score=36.85 Aligned_cols=35 Identities=17% Similarity=0.478 Sum_probs=27.5
Q ss_pred CCcccccccccccccceeEEecc----CCcchHHHHHHHHHh
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTC----GHLYHADCLENITAE 193 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpC----GH~FH~~CI~~Wl~~ 193 (312)
.-.+|.+|.|.|++.- . +.| .|.||.-|-.+-++.
T Consensus 267 apLcCTLC~ERLEDTH-F--VQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTH-F--VQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred CceeehhhhhhhccCc-e--eecCCCcccceecccCHHHHHh
Confidence 4589999999998433 3 345 799999999998764
No 143
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=44.83 E-value=7.2 Score=39.31 Aligned_cols=49 Identities=24% Similarity=0.414 Sum_probs=0.0
Q ss_pred CCccccccccccc-----------ccceeEEeccCCcchHHHHHHHHHhcCC--CCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLS-----------ELCVVAVLTCGHLYHADCLENITAEINK--YDPACPVCTLG 207 (312)
Q Consensus 156 ~~~~C~ICle~f~-----------~~~vv~~LpCGH~FH~~CI~~Wl~~~~~--~~~~CPvCR~~ 207 (312)
....|||=+..|. +...-..|.|||++-.. .|-..... ....||+|+..
T Consensus 276 ~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 276 GRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp -----------------------------------------------------------------
T ss_pred cCCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCcccc
Confidence 4457888876654 11112247899997654 57543221 26789999853
No 144
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.98 E-value=22 Score=27.85 Aligned_cols=43 Identities=28% Similarity=0.534 Sum_probs=28.9
Q ss_pred ccccccccccccceeEEecc--CCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 159 TCGVCSKLLSELCVVAVLTC--GHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 159 ~C~ICle~f~~~~vv~~LpC--GH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
.|--|-..+-.+. ...+-| .|.||.+|.+.-| ...||.|-.++
T Consensus 7 nCECCDrDLpp~s-~dA~ICtfEcTFCadCae~~l------~g~CPnCGGel 51 (84)
T COG3813 7 NCECCDRDLPPDS-TDARICTFECTFCADCAENRL------HGLCPNCGGEL 51 (84)
T ss_pred CCcccCCCCCCCC-CceeEEEEeeehhHhHHHHhh------cCcCCCCCchh
Confidence 5667776665222 222335 5899999998866 45899997655
No 145
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.79 E-value=3 Score=36.30 Aligned_cols=46 Identities=33% Similarity=0.717 Sum_probs=26.9
Q ss_pred CCccccccccc-ccccceeEEeccCCc-------chHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKL-LSELCVVAVLTCGHL-------YHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 156 ~~~~C~ICle~-f~~~~vv~~LpCGH~-------FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
++.+|.||+.. |.+ -|||+ ||+.|-..-....++..-.|-+|+...
T Consensus 64 ddatC~IC~KTKFAD-------G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 64 DDATCGICHKTKFAD-------GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred cCcchhhhhhccccc-------ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 77899999854 442 25665 556665543333233345677887443
No 146
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=42.56 E-value=7.4 Score=28.74 Aligned_cols=37 Identities=19% Similarity=0.411 Sum_probs=18.0
Q ss_pred CCCcccccccccccccceeEE-eccCCcchHHHHHHHH
Q 021416 155 VDMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLENIT 191 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~~vv~~-LpCGH~FH~~CI~~Wl 191 (312)
.+...|.+|...|.-...-.. -.||++||..|.....
T Consensus 7 ~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 7 SEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp GG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 356789999999973221111 2499999999986543
No 147
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=40.71 E-value=20 Score=34.48 Aligned_cols=51 Identities=25% Similarity=0.481 Sum_probs=32.9
Q ss_pred cccccccccccccceeEEe----ccCCcchHHHHHHHHHhcCC-----CCCCCCCCCCCC
Q 021416 158 QTCGVCSKLLSELCVVAVL----TCGHLYHADCLENITAEINK-----YDPACPVCTLGE 208 (312)
Q Consensus 158 ~~C~ICle~f~~~~vv~~L----pCGH~FH~~CI~~Wl~~~~~-----~~~~CPvCR~~~ 208 (312)
..|-+|.+.+.+.+..+.. -|+-++|..|+..-+..... ....||.|++-.
T Consensus 183 ~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 183 VECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred hhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 5899999888423322221 28889999999994332211 145799998633
No 148
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=39.67 E-value=18 Score=25.47 Aligned_cols=35 Identities=20% Similarity=0.453 Sum_probs=24.2
Q ss_pred cccccccccccccce-eEEeccCCcchHHHHHHHHH
Q 021416 158 QTCGVCSKLLSELCV-VAVLTCGHLYHADCLENITA 192 (312)
Q Consensus 158 ~~C~ICle~f~~~~v-v~~LpCGH~FH~~CI~~Wl~ 192 (312)
..|.+|...|..... ..--.||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 469999888773221 11135999999999887654
No 149
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG2071 consensus mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11 [RNA processing and modification]
Probab=37.52 E-value=18 Score=38.14 Aligned_cols=36 Identities=19% Similarity=0.496 Sum_probs=24.5
Q ss_pred CCCcccccccccccc------cce----eEEeccCCcchHHHHHHH
Q 021416 155 VDMQTCGVCSKLLSE------LCV----VAVLTCGHLYHADCLENI 190 (312)
Q Consensus 155 ~~~~~C~ICle~f~~------~~v----v~~LpCGH~FH~~CI~~W 190 (312)
.....|+||.|.|.+ +.. ...+.=|-+||..|+..-
T Consensus 511 e~~~~C~IC~EkFe~v~d~e~~~Wm~kdaV~le~G~ifH~~Cl~e~ 556 (579)
T KOG2071|consen 511 ERQASCPICQEKFEVVFDQEEDLWMYKDAVYLEFGRIFHSKCLSEK 556 (579)
T ss_pred ccccCCcccccccceeecchhhheeecceeeeccCceeeccccchH
Confidence 567899999999871 000 111335899999998763
No 151
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=36.54 E-value=23 Score=27.08 Aligned_cols=13 Identities=23% Similarity=0.432 Sum_probs=9.6
Q ss_pred cchHHHHHHHHHh
Q 021416 181 LYHADCLENITAE 193 (312)
Q Consensus 181 ~FH~~CI~~Wl~~ 193 (312)
-||+.||..|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999985
No 152
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=35.91 E-value=15 Score=23.76 Aligned_cols=10 Identities=40% Similarity=0.816 Sum_probs=7.6
Q ss_pred CCCCCCCCCC
Q 021416 198 DPACPVCTLG 207 (312)
Q Consensus 198 ~~~CPvCR~~ 207 (312)
...||+|..+
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 5689999753
No 153
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.78 E-value=29 Score=37.30 Aligned_cols=48 Identities=31% Similarity=0.674 Sum_probs=34.1
Q ss_pred ccccccccccccceeEEeccCC-cchHHHHHHHHHhcC--CCCCCCCCCCCCCc
Q 021416 159 TCGVCSKLLSELCVVAVLTCGH-LYHADCLENITAEIN--KYDPACPVCTLGEK 209 (312)
Q Consensus 159 ~C~ICle~f~~~~vv~~LpCGH-~FH~~CI~~Wl~~~~--~~~~~CPvCR~~~~ 209 (312)
.|+||-..+. +++.-.||| .-|..|......... +-...||+|+..+.
T Consensus 2 ~c~ic~~s~~---~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPD---FVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCcc---ccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 5999987644 444457999 899999988654322 33567899997553
No 154
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=33.09 E-value=58 Score=26.75 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=30.3
Q ss_pred CCcccccccccccccceeEE------ecc---CCcchHHHHHHHHHhc-----CCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCVVAV------LTC---GHLYHADCLENITAEI-----NKYDPACPVCTL 206 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~------LpC---GH~FH~~CI~~Wl~~~-----~~~~~~CPvCR~ 206 (312)
....|..|...-. +..+.- -.| .=.||..||..+..+. ....-.||.||.
T Consensus 6 ~g~~CHqCrqKt~-~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 6 NGKTCHQCRQKTL-DFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCCchhhcCCCC-CCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 4567888875322 122211 235 5669999998877542 123567999984
No 155
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.22 E-value=25 Score=35.18 Aligned_cols=44 Identities=23% Similarity=0.564 Sum_probs=28.4
Q ss_pred Cccccccccccc--ccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCC
Q 021416 157 MQTCGVCSKLLS--ELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC 204 (312)
Q Consensus 157 ~~~C~ICle~f~--~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvC 204 (312)
-..|++|.-.+. .+-...+=.|||-||..|...|... ...|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~----~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH----NGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC----CccccCc
Confidence 345777764433 2444433459999999999999765 4445444
No 156
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=31.88 E-value=2.4 Score=32.66 Aligned_cols=39 Identities=26% Similarity=0.518 Sum_probs=21.6
Q ss_pred cccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 158 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 158 ~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
..||+|...+... =||.+|..|-..... ...||-|..++
T Consensus 2 ~~CP~C~~~L~~~-------~~~~~C~~C~~~~~~-----~a~CPdC~~~L 40 (70)
T PF07191_consen 2 NTCPKCQQELEWQ-------GGHYHCEACQKDYKK-----EAFCPDCGQPL 40 (70)
T ss_dssp -B-SSS-SBEEEE-------TTEEEETTT--EEEE-----EEE-TTT-SB-
T ss_pred CcCCCCCCccEEe-------CCEEECcccccccee-----cccCCCcccHH
Confidence 4799999886621 178888888776433 45799998665
No 157
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=31.37 E-value=20 Score=32.84 Aligned_cols=13 Identities=38% Similarity=0.703 Sum_probs=11.2
Q ss_pred CCccccccccccc
Q 021416 156 DMQTCGVCSKLLS 168 (312)
Q Consensus 156 ~~~~C~ICle~f~ 168 (312)
...+||||...|.
T Consensus 4 k~~~CPvC~~~F~ 16 (214)
T PF09986_consen 4 KKITCPVCGKEFK 16 (214)
T ss_pred CceECCCCCCeee
Confidence 4568999999998
No 158
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=30.66 E-value=18 Score=25.73 Aligned_cols=26 Identities=23% Similarity=0.547 Sum_probs=12.0
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCccch
Q 021416 187 LENITAEINKYDPACPVCTLGEKKTH 212 (312)
Q Consensus 187 I~~Wl~~~~~~~~~CPvCR~~~~~~~ 212 (312)
+.+++..-......||+|..++..-.
T Consensus 9 ~~k~i~~l~~~~~~CPlC~r~l~~e~ 34 (54)
T PF04423_consen 9 LKKYIEELKEAKGCCPLCGRPLDEEH 34 (54)
T ss_dssp HHHHHHHHTT-SEE-TTT--EE-HHH
T ss_pred HHHHHHHHhcCCCcCCCCCCCCCHHH
Confidence 44555443333448999998775433
No 159
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=30.00 E-value=22 Score=35.51 Aligned_cols=50 Identities=26% Similarity=0.555 Sum_probs=28.2
Q ss_pred CCcccccccccccccceeEEeccC---Ccc--------hHHHHHHHHHhc-CCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCG---HLY--------HADCLENITAEI-NKYDPACPVCTL 206 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCG---H~F--------H~~CI~~Wl~~~-~~~~~~CPvCR~ 206 (312)
.+..||||.+... +-..+.|.|. -.| |..|++.---.. ....+.||.||+
T Consensus 14 l~ElCPVCGDkVS-GYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 14 LGELCPVCGDKVS-GYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred cccccccccCccc-cceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence 4567999998877 6666666653 222 333444311100 012457999996
No 160
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=29.86 E-value=7.3 Score=37.10 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=19.4
Q ss_pred CCCcccccccccccccceeEEec------cCCcchHHHHHHHHHhcCCCCCCCCCCCCC
Q 021416 155 VDMQTCGVCSKLLSELCVVAVLT------CGHLYHADCLENITAEINKYDPACPVCTLG 207 (312)
Q Consensus 155 ~~~~~C~ICle~f~~~~vv~~Lp------CGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~ 207 (312)
.....||||...-. +.+|. =-|.+|.-|-..|--. ...||.|-..
T Consensus 170 w~~g~CPvCGs~P~----~s~l~~~~~~G~R~L~Cs~C~t~W~~~----R~~Cp~Cg~~ 220 (290)
T PF04216_consen 170 WQRGYCPVCGSPPV----LSVLRGGEREGKRYLHCSLCGTEWRFV----RIKCPYCGNT 220 (290)
T ss_dssp TT-SS-TTT---EE----EEEEE------EEEEEETTT--EEE------TTS-TTT---
T ss_pred ccCCcCCCCCCcCc----eEEEecCCCCccEEEEcCCCCCeeeec----CCCCcCCCCC
Confidence 35579999986633 11111 1355666787788654 5689999643
No 161
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=27.24 E-value=35 Score=32.61 Aligned_cols=46 Identities=24% Similarity=0.416 Sum_probs=33.5
Q ss_pred CcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416 157 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL 206 (312)
Q Consensus 157 ~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~ 206 (312)
...|||=...+. .|++- -.|||+|-++=|.+.+... ....||+=-.
T Consensus 176 s~rdPis~~~I~-nPviS-kkC~HvydrDsI~~~l~~~--~~i~CPv~gC 221 (262)
T KOG2979|consen 176 SNRDPISKKPIV-NPVIS-KKCGHVYDRDSIMQILCDE--ITIRCPVLGC 221 (262)
T ss_pred cccCchhhhhhh-chhhh-cCcCcchhhhhHHHHhccC--ceeecccccC
Confidence 357999887777 56552 3599999999999988642 2567887543
No 162
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=27.01 E-value=43 Score=20.93 Aligned_cols=29 Identities=21% Similarity=0.508 Sum_probs=10.7
Q ss_pred ccccccccccccceeEEeccCCcchHHHH
Q 021416 159 TCGVCSKLLSELCVVAVLTCGHLYHADCL 187 (312)
Q Consensus 159 ~C~ICle~f~~~~vv~~LpCGH~FH~~CI 187 (312)
.|.+|.+.........=..|.-.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S--EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCCceEECccCCCccChhcC
Confidence 58889887763244444678889999885
No 163
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=26.40 E-value=41 Score=33.22 Aligned_cols=44 Identities=7% Similarity=-0.041 Sum_probs=31.2
Q ss_pred CCcccccccccccccceeEEeccCCc-chHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~-FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
....|-+|-+-+. ..+..+|||. ||.+|.. +.. .++||+|....
T Consensus 342 s~~~~~~~~~~~~---st~~~~~~~n~~~~~~a~--~s~----~~~~~~c~~~~ 386 (394)
T KOG2113|consen 342 SSLKGTSAGFGLL---STIWSGGNMNLSPGSLAS--ASA----SPTSSTCDHND 386 (394)
T ss_pred hhcccccccCcee---eeEeecCCcccChhhhhh--ccc----CCccccccccc
Confidence 5567889976544 2333589987 8999987 333 88999997544
No 164
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=25.19 E-value=38 Score=21.14 Aligned_cols=37 Identities=24% Similarity=0.624 Sum_probs=23.2
Q ss_pred ccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 159 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 159 ~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
.|..|.+.+...... +..=+..||.+|. .|..|...+
T Consensus 1 ~C~~C~~~i~~~~~~-~~~~~~~~H~~Cf------------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELV-LRALGKVWHPECF------------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEE-EEeCCccccccCC------------CCcccCCcC
Confidence 388898887743122 2335788998774 477776543
No 165
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.74 E-value=35 Score=35.58 Aligned_cols=42 Identities=24% Similarity=0.601 Sum_probs=32.3
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
....|.||.... ..++.+|- |.-|+..|+.. ...||+|....
T Consensus 478 ~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~----~~~~pl~~~~~ 519 (543)
T KOG0802|consen 478 PNDVCAICYQEM----SARITPCS---HALCLRKWLYV----QEVCPLCHTYM 519 (543)
T ss_pred ccCcchHHHHHH----Hhcccccc---chhHHHhhhhh----ccccCCCchhh
Confidence 456899998776 34445677 99999999987 77899997543
No 166
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=24.50 E-value=39 Score=24.45 Aligned_cols=42 Identities=24% Similarity=0.433 Sum_probs=20.0
Q ss_pred cccccccccccc------e-eEEeccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416 160 CGVCSKLLSELC------V-VAVLTCGHLYHADCLENITAEINKYDPACPVCT 205 (312)
Q Consensus 160 C~ICle~f~~~~------v-v~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR 205 (312)
|--|+..|.... . .+--.|++.||.+|=. ++.+ .-..||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~-fiHE---~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDV-FIHE---TLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHH-TTTT---TS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcCh-hhhc---cccCCcCCC
Confidence 666777777432 1 2112499999999942 2222 145799883
No 167
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=23.17 E-value=53 Score=32.60 Aligned_cols=45 Identities=22% Similarity=0.401 Sum_probs=31.2
Q ss_pred CcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416 157 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT 205 (312)
Q Consensus 157 ~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR 205 (312)
...|-.|.+.+......+--.|.++||.+|-.-.-.. -..||-|.
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHes----Lh~CpgCe 374 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHES----LHNCPGCE 374 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhh----hhcCCCcC
Confidence 3459999877775666655569999999994332222 34699996
No 168
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=22.96 E-value=45 Score=22.06 Aligned_cols=11 Identities=27% Similarity=0.537 Sum_probs=7.9
Q ss_pred ccccccccccc
Q 021416 158 QTCGVCSKLLS 168 (312)
Q Consensus 158 ~~C~ICle~f~ 168 (312)
..|+=|...|.
T Consensus 3 i~Cp~C~~~y~ 13 (36)
T PF13717_consen 3 ITCPNCQAKYE 13 (36)
T ss_pred EECCCCCCEEe
Confidence 36788887776
No 169
>PF14353 CpXC: CpXC protein
Probab=22.42 E-value=71 Score=26.42 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=26.7
Q ss_pred cccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416 158 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE 208 (312)
Q Consensus 158 ~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~ 208 (312)
.+||-|...|. ..+-.. -.=.-..+=.+..+ .+.-...+||.|...+
T Consensus 2 itCP~C~~~~~-~~v~~~--I~~~~~p~l~e~il-~g~l~~~~CP~Cg~~~ 48 (128)
T PF14353_consen 2 ITCPHCGHEFE-FEVWTS--INADEDPELKEKIL-DGSLFSFTCPSCGHKF 48 (128)
T ss_pred cCCCCCCCeeE-EEEEeE--EcCcCCHHHHHHHH-cCCcCEEECCCCCCce
Confidence 57999998887 222211 12223444455555 3333467899998644
No 170
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=22.39 E-value=17 Score=31.91 Aligned_cols=25 Identities=32% Similarity=0.689 Sum_probs=19.9
Q ss_pred chHHHHHHHHHhcCCCCCCCCCCCC
Q 021416 182 YHADCLENITAEINKYDPACPVCTL 206 (312)
Q Consensus 182 FH~~CI~~Wl~~~~~~~~~CPvCR~ 206 (312)
||..||++=|.......-.||.|..
T Consensus 2 ~H~~CL~Ppl~~~P~g~W~Cp~C~~ 26 (148)
T cd04718 2 FHLCCLRPPLKEVPEGDWICPFCEV 26 (148)
T ss_pred cccccCCCCCCCCCCCCcCCCCCcC
Confidence 8999999977665555778999984
No 171
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.29 E-value=55 Score=26.73 Aligned_cols=13 Identities=31% Similarity=0.509 Sum_probs=11.7
Q ss_pred cchHHHHHHHHHh
Q 021416 181 LYHADCLENITAE 193 (312)
Q Consensus 181 ~FH~~CI~~Wl~~ 193 (312)
-||+.|+..|..+
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999986
No 172
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=22.26 E-value=93 Score=33.31 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=27.1
Q ss_pred CcccccccccccccceeEEeccCCcchH--HHHHH-HHH--hcCCCCCCCCCCCCCCc
Q 021416 157 MQTCGVCSKLLSELCVVAVLTCGHLYHA--DCLEN-ITA--EINKYDPACPVCTLGEK 209 (312)
Q Consensus 157 ~~~C~ICle~f~~~~vv~~LpCGH~FH~--~CI~~-Wl~--~~~~~~~~CPvCR~~~~ 209 (312)
...|+|+...+. +||.+..|. .|.+. |+. ..++....||+|.+...
T Consensus 306 SL~CPl~~~Rm~-------~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~ 356 (636)
T KOG2169|consen 306 SLNCPLSKMRMS-------LPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAP 356 (636)
T ss_pred EecCCcccceee-------cCCcccccccceecchhhhHHhccCCCeeeCccCCcccc
Confidence 356888776655 455444444 56665 443 23334567999986553
No 173
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=22.00 E-value=3.6e+02 Score=26.14 Aligned_cols=46 Identities=24% Similarity=0.426 Sum_probs=26.6
Q ss_pred CCcccccccccccccce-eEEecc-CCcchHHHHHHHHHhcCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCV-VAVLTC-GHLYHADCLENITAEINKYDPACPVC 204 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~v-v~~LpC-GH~FH~~CI~~Wl~~~~~~~~~CPvC 204 (312)
....|.||.++..++-. ...|-= .=.=|++|.++|-... +..||-=
T Consensus 29 tLsfChiCfEl~iegvpks~llHtkSlRGHrdCFEK~HlIa---nQ~~prs 76 (285)
T PF06937_consen 29 TLSFCHICFELSIEGVPKSNLLHTKSLRGHRDCFEKYHLIA---NQDCPRS 76 (285)
T ss_pred ceeecceeeccccccCccccccccccccchHHHHHHHHHHH---cCCCCcc
Confidence 33469999887653322 211211 1135899999985532 5679833
No 174
>PF12088 DUF3565: Protein of unknown function (DUF3565); InterPro: IPR021948 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 30 to 78 amino acids in length. This protein has two conserved sequence motifs: WVA and CGH.
Probab=21.89 E-value=55 Score=24.59 Aligned_cols=18 Identities=44% Similarity=0.562 Sum_probs=14.1
Q ss_pred ccceeEEeccCCcchHHH
Q 021416 169 ELCVVAVLTCGHLYHADC 186 (312)
Q Consensus 169 ~~~vv~~LpCGH~FH~~C 186 (312)
++.-++.|.|||.-|..=
T Consensus 8 e~hWVA~L~CGH~QHvRH 25 (61)
T PF12088_consen 8 EGHWVAELSCGHTQHVRH 25 (61)
T ss_pred cCCEEEEecccccccccC
Confidence 356788999999988653
No 175
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=21.79 E-value=86 Score=19.29 Aligned_cols=9 Identities=44% Similarity=0.988 Sum_probs=7.4
Q ss_pred CCCCCCCCC
Q 021416 200 ACPVCTLGE 208 (312)
Q Consensus 200 ~CPvCR~~~ 208 (312)
.||+|...+
T Consensus 3 ~CPiC~~~v 11 (26)
T smart00734 3 QCPVCFREV 11 (26)
T ss_pred cCCCCcCcc
Confidence 699998766
No 176
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=20.83 E-value=53 Score=21.75 Aligned_cols=11 Identities=27% Similarity=0.597 Sum_probs=8.5
Q ss_pred ccccccccccc
Q 021416 158 QTCGVCSKLLS 168 (312)
Q Consensus 158 ~~C~ICle~f~ 168 (312)
..||-|...|.
T Consensus 3 i~CP~C~~~f~ 13 (37)
T PF13719_consen 3 ITCPNCQTRFR 13 (37)
T ss_pred EECCCCCceEE
Confidence 46888888877
No 177
>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E.
Probab=20.74 E-value=60 Score=22.58 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=19.9
Q ss_pred cccccCCCCCccccccccCccccCCCCC
Q 021416 236 RIVDSNLDSNSVVLDRHKGSWNEGKGPK 263 (312)
Q Consensus 236 ~~ld~~~~~~~~~~~~~~~~~~~G~~~k 263 (312)
+++|.++++..+.++++.+++..+...+
T Consensus 1 ltlDp~TAh~~L~lS~d~k~v~~~~~~~ 28 (49)
T PF13765_consen 1 LTLDPNTAHPSLVLSEDGKSVRYSEQPQ 28 (49)
T ss_dssp -EB-TTTS-TTEEEETTSSEEEE-SST-
T ss_pred CEECcccCCCCeEECCCCeEEEEccCCc
Confidence 3689999999999999999887765553
No 178
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=20.19 E-value=23 Score=38.97 Aligned_cols=49 Identities=16% Similarity=0.295 Sum_probs=29.7
Q ss_pred CCcccccccccccccceeEEeccCCcchHHHHHHHHH--hcCCCCCCCCCCC
Q 021416 156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITA--EINKYDPACPVCT 205 (312)
Q Consensus 156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~--~~~~~~~~CPvCR 205 (312)
....|..|..-+...- -+--.|||.||..|+..|.. ..+..-..|++|+
T Consensus 228 ~~~mC~~C~~tlfn~h-w~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~ 278 (889)
T KOG1356|consen 228 IREMCDRCETTLFNIH-WRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSW 278 (889)
T ss_pred cchhhhhhccccccee-EEccccCCeeeecchhhccccchHhHhhhhhhHHH
Confidence 3457999986654112 22234999999999999951 1111133466665
Done!