Query         021416
Match_columns 312
No_of_seqs    383 out of 1562
Neff          5.6 
Searched_HMMs 29240
Date          Mon Mar 25 03:50:19 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021416hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2l0b_A E3 ubiquitin-protein li  99.5 1.6E-14 5.5E-19  113.1   6.2   74  132-209    12-88  (91)
  2 2ep4_A Ring finger protein 24;  99.4 1.3E-13 4.3E-18  103.1   5.2   54  155-212    13-66  (74)
  3 1x4j_A Ring finger protein 38;  99.4 8.4E-14 2.9E-18  104.6   4.1   51  155-209    21-71  (75)
  4 2kiz_A E3 ubiquitin-protein li  99.4 4.2E-13 1.4E-17   99.0   5.6   51  155-209    12-62  (69)
  5 1iym_A EL5; ring-H2 finger, ub  99.4 1.9E-13 6.4E-18   96.4   2.7   49  156-208     4-53  (55)
  6 2ect_A Ring finger protein 126  99.3 3.9E-13 1.3E-17  101.4   4.1   51  155-209    13-63  (78)
  7 2ecm_A Ring finger and CHY zin  99.3 9.5E-13 3.2E-17   92.6   4.4   49  156-208     4-53  (55)
  8 1v87_A Deltex protein 2; ring-  99.3   2E-12 6.9E-17  104.2   6.7   54  156-209    24-93  (114)
  9 2ea6_A Ring finger protein 4;   99.3 1.5E-12 5.2E-17   95.1   4.8   51  155-209    13-67  (69)
 10 2ecl_A Ring-box protein 2; RNF  99.3 1.7E-12 5.7E-17   99.7   4.3   51  155-209    13-75  (81)
 11 3ztg_A E3 ubiquitin-protein li  99.3 3.1E-12 1.1E-16   99.3   5.8   50  155-209    11-61  (92)
 12 3ng2_A RNF4, snurf, ring finge  99.3 1.8E-12 6.3E-17   95.5   4.2   51  155-209     8-62  (71)
 13 2d8t_A Dactylidin, ring finger  99.3 1.9E-12 6.4E-17   96.3   3.0   49  154-209    12-60  (71)
 14 2xeu_A Ring finger protein 4;   99.2 3.2E-12 1.1E-16   92.1   3.9   50  156-209     2-55  (64)
 15 2djb_A Polycomb group ring fin  99.2 6.8E-12 2.3E-16   93.5   5.7   50  155-210    13-62  (72)
 16 3dpl_R Ring-box protein 1; ubi  99.2 4.4E-12 1.5E-16  102.9   4.8   51  154-208    34-99  (106)
 17 2yur_A Retinoblastoma-binding   99.2 4.9E-12 1.7E-16   95.0   4.3   51  155-210    13-64  (74)
 18 2csy_A Zinc finger protein 183  99.2 9.2E-12 3.1E-16   94.7   5.3   48  155-209    13-60  (81)
 19 1t1h_A Gspef-atpub14, armadill  99.2   4E-12 1.4E-16   95.8   2.6   49  155-209     6-54  (78)
 20 1chc_A Equine herpes virus-1 r  99.2 5.8E-12   2E-16   92.4   3.4   49  156-210     4-52  (68)
 21 2y43_A E3 ubiquitin-protein li  99.2 6.3E-12 2.2E-16   99.1   3.8   48  156-210    21-69  (99)
 22 4ayc_A E3 ubiquitin-protein li  99.2 3.5E-12 1.2E-16  106.9   2.4   49  156-211    52-100 (138)
 23 2ct2_A Tripartite motif protei  99.2 2.1E-11 7.1E-16   93.3   6.0   54  155-209    13-67  (88)
 24 2kr4_A Ubiquitin conjugation f  99.2 1.5E-11   5E-16   95.5   4.9   50  155-211    12-61  (85)
 25 2ecy_A TNF receptor-associated  99.2 1.4E-11 4.7E-16   90.2   4.3   49  155-209    13-61  (66)
 26 2ysl_A Tripartite motif-contai  99.2   1E-11 3.5E-16   92.2   3.5   51  155-209    18-68  (73)
 27 1g25_A CDK-activating kinase a  99.2 1.7E-11   6E-16   89.4   4.4   51  155-209     1-54  (65)
 28 2ysj_A Tripartite motif-contai  99.2 1.9E-11 6.5E-16   88.5   4.1   46  155-204    18-63  (63)
 29 3fl2_A E3 ubiquitin-protein li  99.1 1.6E-11 5.4E-16  100.7   3.4   49  156-210    51-99  (124)
 30 3lrq_A E3 ubiquitin-protein li  99.1 1.6E-11 5.3E-16   97.6   2.7   49  156-209    21-69  (100)
 31 2ckl_A Polycomb group ring fin  99.1 2.7E-11 9.1E-16   97.1   3.8   48  156-210    14-62  (108)
 32 2kre_A Ubiquitin conjugation f  99.1 2.8E-11 9.5E-16   97.0   3.6   49  155-210    27-75  (100)
 33 2ecn_A Ring finger protein 141  99.1 7.6E-12 2.6E-16   92.4   0.2   47  155-209    13-59  (70)
 34 1wgm_A Ubiquitin conjugation f  99.1 3.6E-11 1.2E-15   96.0   4.1   50  155-211    20-70  (98)
 35 2ecw_A Tripartite motif-contai  99.1 7.2E-11 2.5E-15   89.2   5.0   51  156-209    18-70  (85)
 36 2d8s_A Cellular modulator of i  99.1 4.3E-11 1.5E-15   92.4   3.4   52  155-209    13-69  (80)
 37 4a0k_B E3 ubiquitin-protein li  99.1 1.3E-11 4.5E-16  102.0   0.5   50  155-208    46-110 (117)
 38 2ecj_A Tripartite motif-contai  99.1 4.8E-11 1.6E-15   84.5   3.3   46  155-204    13-58  (58)
 39 2yu4_A E3 SUMO-protein ligase   99.1 1.2E-10 4.2E-15   91.7   5.7   50  155-207     5-59  (94)
 40 2egp_A Tripartite motif-contai  99.1 3.6E-11 1.2E-15   90.3   2.2   52  155-209    10-64  (79)
 41 1z6u_A NP95-like ring finger p  99.1 5.2E-11 1.8E-15  101.7   3.4   50  156-211    77-126 (150)
 42 2ckl_B Ubiquitin ligase protei  99.1 9.9E-11 3.4E-15  100.4   5.2   50  156-210    53-102 (165)
 43 2ecv_A Tripartite motif-contai  99.1 8.5E-11 2.9E-15   88.8   4.0   51  156-209    18-70  (85)
 44 4ap4_A E3 ubiquitin ligase RNF  99.1 6.1E-11 2.1E-15   96.5   3.3   51  155-209     5-59  (133)
 45 3hct_A TNF receptor-associated  99.0 9.2E-11 3.2E-15   95.6   4.0   50  155-210    16-65  (118)
 46 1jm7_A BRCA1, breast cancer ty  99.0 8.9E-11   3E-15   93.8   2.7   50  156-209    20-69  (112)
 47 3l11_A E3 ubiquitin-protein li  99.0   6E-11   2E-15   95.9   1.7   50  155-210    13-62  (115)
 48 1jm7_B BARD1, BRCA1-associated  99.0 6.3E-11 2.1E-15   96.4   0.4   45  156-209    21-66  (117)
 49 2c2l_A CHIP, carboxy terminus   99.0   4E-10 1.4E-14  102.4   5.8   51  155-211   206-256 (281)
 50 2vje_A E3 ubiquitin-protein li  99.0 1.8E-10 6.1E-15   84.8   2.3   54  155-213     6-60  (64)
 51 1rmd_A RAG1; V(D)J recombinati  98.9 3.8E-10 1.3E-14   91.2   3.6   49  156-210    22-70  (116)
 52 1e4u_A Transcriptional repress  98.9 3.3E-10 1.1E-14   86.9   2.2   53  155-211     9-63  (78)
 53 4ap4_A E3 ubiquitin ligase RNF  98.9 4.8E-10 1.6E-14   91.2   3.3   51  155-209    70-124 (133)
 54 2vje_B MDM4 protein; proto-onc  98.8 6.9E-10 2.4E-14   81.4   1.7   53  156-213     6-59  (63)
 55 2f42_A STIP1 homology and U-bo  98.8   3E-09   1E-13   93.8   5.5   64  155-224   104-167 (179)
 56 1bor_A Transcription factor PM  98.8 6.2E-10 2.1E-14   79.5   0.7   45  155-209     4-48  (56)
 57 4ic3_A E3 ubiquitin-protein li  98.8 5.4E-10 1.8E-14   84.2   0.2   46  156-212    23-69  (74)
 58 3knv_A TNF receptor-associated  98.8 7.2E-10 2.5E-14   93.8   0.6   48  155-208    29-76  (141)
 59 1wim_A KIAA0161 protein; ring   98.8 4.9E-09 1.7E-13   82.0   5.1   51  156-207     4-61  (94)
 60 3hcs_A TNF receptor-associated  98.8   3E-09   1E-13   91.4   4.0   50  155-210    16-65  (170)
 61 2ct0_A Non-SMC element 1 homol  98.7 5.2E-09 1.8E-13   79.9   4.0   49  156-208    14-62  (74)
 62 2y1n_A E3 ubiquitin-protein li  98.7 3.3E-09 1.1E-13  103.6   3.7   49  156-210   331-379 (389)
 63 2ecg_A Baculoviral IAP repeat-  98.7 3.6E-09 1.2E-13   79.7   1.5   46  156-212    24-70  (75)
 64 3htk_C E3 SUMO-protein ligase   98.6 9.3E-09 3.2E-13   95.6   2.8   51  155-209   179-231 (267)
 65 2ea5_A Cell growth regulator w  98.6 2.2E-08 7.5E-13   74.6   2.8   50  155-215    13-63  (68)
 66 2yho_A E3 ubiquitin-protein li  98.5 1.4E-08 4.9E-13   77.6  -0.7   47  156-213    17-64  (79)
 67 2bay_A PRE-mRNA splicing facto  98.4   9E-08 3.1E-12   70.0   3.0   45  158-209     4-49  (61)
 68 1vyx_A ORF K3, K3RING; zinc-bi  98.4 2.5E-07 8.4E-12   67.5   4.3   50  155-209     4-58  (60)
 69 3t6p_A Baculoviral IAP repeat-  98.3   5E-08 1.7E-12   93.9  -0.5   48  156-214   294-342 (345)
 70 3k1l_B Fancl; UBC, ring, RWD,   98.2 2.2E-07 7.6E-12   89.5  -0.0   55  155-209   306-372 (381)
 71 3vk6_A E3 ubiquitin-protein li  97.9 8.7E-06   3E-10   65.3   3.8   47  159-210     3-49  (101)
 72 3nw0_A Non-structural maintena  97.3 6.9E-05 2.4E-09   68.5   1.6   95  110-208   132-227 (238)
 73 2jun_A Midline-1; B-BOX, TRIM,  95.7  0.0052 1.8E-07   47.8   2.8   35  156-190     2-36  (101)
 74 2lri_C Autoimmune regulator; Z  92.5   0.063 2.2E-06   39.5   2.4   50  156-208    11-60  (66)
 75 3m62_A Ubiquitin conjugation f  90.3     0.2   7E-06   53.8   4.5   63  155-224   889-952 (968)
 76 2ko5_A Ring finger protein Z;   89.6   0.073 2.5E-06   42.2   0.3   45  156-209    27-72  (99)
 77 1f62_A Transcription factor WS  86.3    0.25 8.6E-06   33.8   1.3   48  159-206     2-49  (51)
 78 2k16_A Transcription initiatio  85.8    0.22 7.5E-06   36.8   0.9   51  156-206    17-67  (75)
 79 2lbm_A Transcriptional regulat  85.6     1.5 5.2E-05   36.9   6.1   50  154-206    60-116 (142)
 80 1wil_A KIAA1045 protein; ring   84.9    0.64 2.2E-05   36.1   3.1   47  155-205    13-74  (89)
 81 2l5u_A Chromodomain-helicase-D  84.5    0.32 1.1E-05   34.9   1.2   49  155-206     9-57  (61)
 82 3lqh_A Histone-lysine N-methyl  84.2    0.55 1.9E-05   41.1   2.9   52  158-209     3-65  (183)
 83 2ysm_A Myeloid/lymphoid or mix  81.8    0.27 9.2E-06   39.0  -0.1   51  155-205     5-55  (111)
 84 3o36_A Transcription intermedi  81.3    0.21 7.1E-06   43.1  -1.0   48  156-206     3-50  (184)
 85 1weo_A Cellulose synthase, cat  79.9     2.2 7.5E-05   33.4   4.4   51  156-209    15-69  (93)
 86 1mm2_A MI2-beta; PHD, zinc fin  79.4    0.21 7.1E-06   35.9  -1.4   50  155-207     7-56  (61)
 87 2yql_A PHD finger protein 21A;  78.5     0.1 3.4E-06   36.8  -3.3   48  155-205     7-54  (56)
 88 3u5n_A E3 ubiquitin-protein li  78.2     0.3   1E-05   43.0  -1.1   49  155-206     5-53  (207)
 89 1wep_A PHF8; structural genomi  77.7     1.4 4.9E-05   32.8   2.8   53  155-208    10-64  (79)
 90 1we9_A PHD finger family prote  76.7    0.18 6.3E-06   36.1  -2.4   52  155-206     4-57  (64)
 91 1weu_A Inhibitor of growth fam  76.1    0.59   2E-05   36.5   0.2   49  156-208    35-86  (91)
 92 1wen_A Inhibitor of growth fam  74.9    0.76 2.6E-05   34.0   0.5   49  156-208    15-66  (71)
 93 2puy_A PHD finger protein 21A;  74.2    0.22 7.7E-06   35.4  -2.4   48  155-205     3-50  (60)
 94 2lv9_A Histone-lysine N-methyl  73.8    0.87   3E-05   35.6   0.7   50  156-207    27-76  (98)
 95 2cs3_A Protein C14ORF4, MY039   73.6     5.3 0.00018   30.8   5.0   38  155-193    13-52  (93)
 96 1xwh_A Autoimmune regulator; P  72.2    0.28 9.6E-06   35.6  -2.4   49  155-206     6-54  (66)
 97 1fp0_A KAP-1 corepressor; PHD   71.2    0.61 2.1E-05   36.2  -0.8   49  155-206    23-71  (88)
 98 3v43_A Histone acetyltransfera  69.7     3.8 0.00013   32.4   3.6   50  156-205     4-62  (112)
 99 2yt5_A Metal-response element-  69.5    0.43 1.5E-05   34.3  -1.9   53  155-207     4-61  (66)
100 2e6r_A Jumonji/ARID domain-con  68.4    0.32 1.1E-05   37.8  -2.9   51  155-205    14-64  (92)
101 2ro1_A Transcription intermedi  67.2    0.65 2.2E-05   40.5  -1.6   47  157-206     2-48  (189)
102 3ql9_A Transcriptional regulat  65.8     7.7 0.00026   32.0   4.8   49  154-205    54-109 (129)
103 3v43_A Histone acetyltransfera  64.2    0.91 3.1E-05   36.2  -1.1   51  156-206    60-111 (112)
104 2ffw_A Midline-1; B-BOX, ring   63.9     2.8 9.6E-05   31.2   1.6   42  244-289    28-71  (78)
105 2e6s_A E3 ubiquitin-protein li  59.2     1.2 4.3E-05   33.4  -1.1   48  159-206    28-76  (77)
106 3asl_A E3 ubiquitin-protein li  58.5     1.4 4.8E-05   32.4  -0.9   48  159-206    20-68  (70)
107 1wev_A Riken cDNA 1110020M19;   57.8    0.91 3.1E-05   34.8  -2.1   50  156-205    15-70  (88)
108 3c6w_A P28ING5, inhibitor of g  57.7    0.85 2.9E-05   32.5  -2.2   47  156-206     8-57  (59)
109 3shb_A E3 ubiquitin-protein li  57.6     1.1 3.9E-05   33.7  -1.5   48  159-206    28-76  (77)
110 2yw8_A RUN and FYVE domain-con  55.8     5.2 0.00018   30.0   1.9   36  154-189    16-52  (82)
111 3i2d_A E3 SUMO-protein ligase   55.8      10 0.00035   36.5   4.4   48  158-209   250-299 (371)
112 2vnf_A ING 4, P29ING4, inhibit  54.8    0.95 3.3E-05   32.3  -2.3   46  156-205     9-57  (60)
113 2g6q_A Inhibitor of growth pro  53.8     1.2   4E-05   32.1  -2.0   47  156-206    10-59  (62)
114 1wee_A PHD finger family prote  52.5    0.95 3.3E-05   33.2  -2.7   49  156-205    15-64  (72)
115 2ri7_A Nucleosome-remodeling f  52.1     2.3   8E-05   35.8  -0.7   50  156-206     7-58  (174)
116 2ysm_A Myeloid/lymphoid or mix  51.9       1 3.5E-05   35.5  -2.8   49  158-206    55-103 (111)
117 3o70_A PHD finger protein 13;   50.9     1.2 4.2E-05   32.6  -2.3   50  155-206    17-66  (68)
118 1z2q_A LM5-1; membrane protein  49.5     7.9 0.00027   29.1   2.0   36  154-189    18-54  (84)
119 4fo9_A E3 SUMO-protein ligase   49.4      16 0.00053   35.2   4.5   49  157-209   215-265 (360)
120 2kgg_A Histone demethylase jar  49.4     1.8 6.3E-05   29.7  -1.5   47  159-205     4-52  (52)
121 1x4u_A Zinc finger, FYVE domai  49.0       9 0.00031   28.7   2.3   37  153-189    10-47  (84)
122 2l43_A N-teminal domain from h  48.0     2.8 9.5E-05   32.1  -0.8   50  155-206    23-74  (88)
123 1joc_A EEA1, early endosomal a  47.4     6.8 0.00023   31.8   1.4   34  156-189    68-102 (125)
124 1y02_A CARP2, FYVE-ring finger  47.4     1.4   5E-05   35.9  -2.6   49  153-205    15-64  (120)
125 4gne_A Histone-lysine N-methyl  47.2     4.6 0.00016   32.2   0.4   47  155-206    13-61  (107)
126 3t7l_A Zinc finger FYVE domain  45.7     7.7 0.00026   29.6   1.4   36  156-191    19-55  (90)
127 1wfk_A Zinc finger, FYVE domai  43.8      12 0.00039   28.6   2.2   35  155-189     7-42  (88)
128 3ask_A E3 ubiquitin-protein li  43.8     2.6 8.8E-05   38.1  -1.8   49  158-206   175-224 (226)
129 1vfy_A Phosphatidylinositol-3-  41.7      12  0.0004   27.3   1.9   33  157-189    11-44  (73)
130 3o7a_A PHD finger protein 13 v  41.4     2.3 7.8E-05   29.2  -2.0   49  156-206     3-51  (52)
131 3mjh_B Early endosome antigen   41.4     5.8  0.0002   25.5   0.1   14  155-168     3-16  (34)
132 1wem_A Death associated transc  40.3      20  0.0007   26.0   3.0   50  156-206    15-69  (76)
133 2jmi_A Protein YNG1, ING1 homo  40.0     3.1 0.00011   32.2  -1.6   46  156-205    25-74  (90)
134 2kwj_A Zinc finger protein DPF  39.9     3.4 0.00011   32.9  -1.5   48  158-205     2-59  (114)
135 2kwj_A Zinc finger protein DPF  39.9     1.8   6E-05   34.6  -3.2   48  158-205    59-106 (114)
136 1zfo_A LAsp-1; LIM domain, zin  39.9     9.2 0.00031   23.4   0.8   28  158-187     4-31  (31)
137 2ku3_A Bromodomain-containing   39.3      27 0.00091   25.5   3.5   49  155-205    14-64  (71)
138 3mpx_A FYVE, rhogef and PH dom  38.3     6.7 0.00023   37.3   0.0   50  156-205   374-427 (434)
139 1dvp_A HRS, hepatocyte growth   38.0      11 0.00036   33.1   1.3   34  156-189   160-194 (220)
140 1z60_A TFIIH basal transcripti  36.7      10 0.00035   27.1   0.8   43  158-204    16-58  (59)
141 3zyq_A Hepatocyte growth facto  36.6      12 0.00042   33.1   1.5   34  156-189   163-197 (226)
142 2vpb_A Hpygo1, pygopus homolog  35.1      26 0.00088   25.2   2.8   35  155-189     6-42  (65)
143 2zet_C Melanophilin; complex,   29.7      15 0.00051   31.0   0.8   48  155-205    66-115 (153)
144 2o35_A Hypothetical protein DU  29.6      21 0.00072   28.3   1.6   13  181-193    42-54  (105)
145 3fyb_A Protein of unknown func  28.9      22 0.00076   28.2   1.6   13  181-193    41-53  (104)
146 2pv0_B DNA (cytosine-5)-methyl  27.8      43  0.0015   32.4   3.7   48  156-206    92-147 (386)
147 1wew_A DNA-binding family prot  27.5      36  0.0012   25.0   2.5   51  156-207    15-72  (78)
148 1zbd_B Rabphilin-3A; G protein  27.0      17 0.00058   29.9   0.6   51  155-205    53-105 (134)
149 1x4i_A Inhibitor of growth pro  26.5      16 0.00053   26.7   0.3   46  156-205     5-53  (70)
150 1x64_A Alpha-actinin-2 associa  26.2      40  0.0014   24.7   2.6   38  156-208    24-61  (89)
151 1m3v_A FLIN4, fusion of the LI  25.3      59   0.002   25.3   3.6   41  154-208     2-42  (122)
152 2d8v_A Zinc finger FYVE domain  24.4      28 0.00095   25.6   1.3   32  155-190     6-38  (67)
153 2xb1_A Pygopus homolog 2, B-ce  24.1      25 0.00085   27.5   1.1   50  158-207     4-61  (105)
154 3a1b_A DNA (cytosine-5)-methyl  24.0      45  0.0015   28.4   2.7   48  155-205    77-132 (159)
155 2gmg_A Hypothetical protein PF  23.7      34  0.0012   27.2   1.8   24  176-208    71-94  (105)
156 1x62_A C-terminal LIM domain p  22.7      36  0.0012   24.3   1.7   39  155-208    13-51  (79)
157 2rsd_A E3 SUMO-protein ligase   22.6     3.1 0.00011   30.1  -4.2   49  156-205     9-63  (68)
158 2xqn_T Testin, TESS; metal-bin  22.1      53  0.0018   25.5   2.7   47  155-209    28-74  (126)
159 3uv9_A TRIM5alpha, tripartite   22.1      64  0.0022   27.4   3.4   32  230-262     8-39  (186)
160 2jmo_A Parkin; IBR, E3 ligase,  22.0     5.5 0.00019   29.7  -3.0   14  177-190    55-68  (80)
161 3kv5_D JMJC domain-containing   21.4      12  0.0004   37.3  -1.6   49  156-205    36-86  (488)
162 2l4z_A DNA endonuclease RBBP8,  21.2      30   0.001   27.5   1.1   39  156-208    60-98  (123)
163 2cu8_A Cysteine-rich protein 2  20.1      37  0.0013   24.0   1.3   39  156-208     8-46  (76)

No 1  
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.51  E-value=1.6e-14  Score=113.13  Aligned_cols=74  Identities=19%  Similarity=0.315  Sum_probs=59.0

Q ss_pred             CcccCCCHHHHhhcccccccC---CCCCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416          132 SESLGFNHEKIARSCSRVSAS---SSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE  208 (312)
Q Consensus       132 ~e~~G~~~e~I~~~~~~~s~s---~~~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~  208 (312)
                      ....|++.+.|..++......   ...+...|+||++.|..+..+..|+|||.||..||..|+..    ...||+||..+
T Consensus        12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~   87 (91)
T 2l0b_A           12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK----SGTCPVCRCMF   87 (91)
T ss_dssp             SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT----TCBCTTTCCBS
T ss_pred             cCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc----CCcCcCcCccC
Confidence            356688999998888662221   12356789999999987777888999999999999999976    67999999766


Q ss_pred             c
Q 021416          209 K  209 (312)
Q Consensus       209 ~  209 (312)
                      .
T Consensus        88 ~   88 (91)
T 2l0b_A           88 P   88 (91)
T ss_dssp             S
T ss_pred             C
Confidence            3


No 2  
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42  E-value=1.3e-13  Score=103.12  Aligned_cols=54  Identities=20%  Similarity=0.474  Sum_probs=46.1

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccch
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTH  212 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~  212 (312)
                      .+...|+||++.|.....+.+|+|||+||..||.+|+..    ...||+||..+..+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~~~~~~   66 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV----RKVCPLCNMPVLQLA   66 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH----CSBCTTTCCBCSSCC
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc----CCcCCCcCccccccc
Confidence            367789999999986677777899999999999999987    668999998875543


No 3  
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42  E-value=8.4e-14  Score=104.64  Aligned_cols=51  Identities=25%  Similarity=0.643  Sum_probs=44.9

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .+...|+||++.|.....+..|+|||+||..||.+|+..    ...||+||..+.
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~~~   71 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA----NRTCPICRADSG   71 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH----CSSCTTTCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc----CCcCcCcCCcCC
Confidence            366789999999987777788999999999999999987    678999998764


No 4  
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.38  E-value=4.2e-13  Score=98.98  Aligned_cols=51  Identities=27%  Similarity=0.647  Sum_probs=43.9

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .+...|+||++.|.....+..++|||+||..||.+|+..    ...||+||..+.
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~   62 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT----NKKCPICRVDIE   62 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCSBSC
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc----CCCCcCcCcccc
Confidence            356789999999986666777999999999999999987    668999998764


No 5  
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.36  E-value=1.9e-13  Score=96.42  Aligned_cols=49  Identities=33%  Similarity=0.710  Sum_probs=42.8

Q ss_pred             CCcccccccccccccceeEEec-cCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVLT-CGHLYHADCLENITAEINKYDPACPVCTLGE  208 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~Lp-CGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~  208 (312)
                      +...|+||++.|..+..+..++ |||+||..||.+|+..    ...||+||..+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~----~~~CP~Cr~~~   53 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS----HSTCPLCRLTV   53 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT----CCSCSSSCCCS
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc----CCcCcCCCCEe
Confidence            5678999999998766677787 9999999999999976    67899999765


No 6  
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.35  E-value=3.9e-13  Score=101.39  Aligned_cols=51  Identities=27%  Similarity=0.542  Sum_probs=44.1

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .+...|+||++.|.....+.+|+|||+||..||.+|+..    ...||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~   63 (78)
T 2ect_A           13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ----HDSCPVCRKSLT   63 (78)
T ss_dssp             SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT----TCSCTTTCCCCC
T ss_pred             CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc----CCcCcCcCCccC
Confidence            367799999999986666777899999999999999976    678999998774


No 7  
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.32  E-value=9.5e-13  Score=92.60  Aligned_cols=49  Identities=33%  Similarity=0.724  Sum_probs=41.4

Q ss_pred             CCccccccccccccc-ceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSEL-CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE  208 (312)
Q Consensus       156 ~~~~C~ICle~f~~~-~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~  208 (312)
                      +...|+||++.|.+. ..+..++|||+||..||.+|+..    ...||+||..+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~   53 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE----GYRCPLCSGPS   53 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH----TCCCTTSCCSS
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc----CCcCCCCCCcC
Confidence            567899999998632 34566899999999999999988    57899999765


No 8  
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.32  E-value=2e-12  Score=104.19  Aligned_cols=54  Identities=24%  Similarity=0.442  Sum_probs=41.3

Q ss_pred             CCcccccccccccccc---------------eeEEeccCCcchHHHHHHHHHhcC-CCCCCCCCCCCCCc
Q 021416          156 DMQTCGVCSKLLSELC---------------VVAVLTCGHLYHADCLENITAEIN-KYDPACPVCTLGEK  209 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~---------------vv~~LpCGH~FH~~CI~~Wl~~~~-~~~~~CPvCR~~~~  209 (312)
                      .+..|+||++.|....               ++..++|||+||..||..|+.... .....||+||..+.
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~   93 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence            4568999999996322               344688999999999999996432 23679999997663


No 9  
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30  E-value=1.5e-12  Score=95.15  Aligned_cols=51  Identities=24%  Similarity=0.645  Sum_probs=42.2

Q ss_pred             CCCccccccccccccc----ceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSEL----CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~----~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .+...|+||++.|.+.    ..+..++|||+||..||..|+..    ...||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~   67 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKIN   67 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH----CSSCTTTCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc----CCCCCCCCCccC
Confidence            4678899999999832    22355899999999999999987    678999998764


No 10 
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28  E-value=1.7e-12  Score=99.70  Aligned_cols=51  Identities=25%  Similarity=0.614  Sum_probs=39.7

Q ss_pred             CCCcccccccccccc-----------cceeEEec-cCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSE-----------LCVVAVLT-CGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~-----------~~vv~~Lp-CGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .++..|+||++.|.+           +..+.+++ |||+||.+||.+|+..    ..+||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~~   75 (81)
T 2ecl_A           13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ----NNRCPLCQQDWV   75 (81)
T ss_dssp             CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT----CCBCTTTCCBCC
T ss_pred             CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh----CCCCCCcCCCcc
Confidence            466778888888752           33344555 9999999999999987    679999998764


No 11 
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.28  E-value=3.1e-12  Score=99.33  Aligned_cols=50  Identities=26%  Similarity=0.719  Sum_probs=42.6

Q ss_pred             CCCcccccccccccccceeEEec-cCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLT-CGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~Lp-CGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .+...|+||++.|. ++++  ++ |||.||..||..|+....  ...||+||..+.
T Consensus        11 ~~~~~C~IC~~~~~-~p~~--~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~   61 (92)
T 3ztg_A           11 PDELLCLICKDIMT-DAVV--IPCCGNSYCDECIRTALLESD--EHTCPTCHQNDV   61 (92)
T ss_dssp             CTTTEETTTTEECS-SCEE--CTTTCCEECHHHHHHHHHHCT--TCCCTTTCCSSC
T ss_pred             CcCCCCCCCChhhc-CceE--CCCCCCHHHHHHHHHHHHhcC--CCcCcCCCCcCC
Confidence            36789999999998 7776  89 999999999999997632  468999998763


No 12 
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.28  E-value=1.8e-12  Score=95.53  Aligned_cols=51  Identities=24%  Similarity=0.645  Sum_probs=42.2

Q ss_pred             CCCccccccccccccc----ceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSEL----CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~----~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .+...|+||++.|.+.    .....++|||+||..||.+|+..    ...||+||..+.
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~   62 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKIN   62 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH----CSBCTTTCCBCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc----CCCCCCCCCccC
Confidence            4678899999999732    33355899999999999999987    679999998764


No 13 
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25  E-value=1.9e-12  Score=96.34  Aligned_cols=49  Identities=20%  Similarity=0.491  Sum_probs=41.8

Q ss_pred             CCCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          154 SVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       154 ~~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      ..+...|+||++.|. .+++  ++|||+||..||..|+..    ...||+||..+.
T Consensus        12 ~~~~~~C~IC~~~~~-~~~~--~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~   60 (71)
T 2d8t_A           12 SLTVPECAICLQTCV-HPVS--LPCKHVFCYLCVKGASWL----GKRCALCRQEIP   60 (71)
T ss_dssp             SSSCCBCSSSSSBCS-SEEE--ETTTEEEEHHHHHHCTTC----SSBCSSSCCBCC
T ss_pred             CCCCCCCccCCcccC-CCEE--ccCCCHHHHHHHHHHHHC----CCcCcCcCchhC
Confidence            347789999999987 5555  899999999999999976    678999998774


No 14 
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.25  E-value=3.2e-12  Score=92.06  Aligned_cols=50  Identities=26%  Similarity=0.694  Sum_probs=41.3

Q ss_pred             CCccccccccccccc----ceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          156 DMQTCGVCSKLLSEL----CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       156 ~~~~C~ICle~f~~~----~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      +...|+||++.|.+.    ..+..++|||.||..||.+|+..    ...||+||..+.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~   55 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKIN   55 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH----CSBCTTTCCBCT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc----CCCCCCCCccCC
Confidence            467899999999732    23355899999999999999987    679999998764


No 15 
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25  E-value=6.8e-12  Score=93.54  Aligned_cols=50  Identities=18%  Similarity=0.461  Sum_probs=41.5

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK  210 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~  210 (312)
                      .+...|+||++.|. .+++ .++|||+||..||..|+..    ...||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~-~p~~-~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~   62 (72)
T 2djb_A           13 TPYILCSICKGYLI-DATT-ITECLHTFCKSCIVRHFYY----SNRCPKCNIVVHQ   62 (72)
T ss_dssp             CGGGSCTTTSSCCS-SCEE-CSSSCCEECHHHHHHHHHH----CSSCTTTCCCCCS
T ss_pred             CCCCCCCCCChHHH-CcCE-ECCCCCHHHHHHHHHHHHc----CCcCCCcCcccCc
Confidence            36678999999998 4544 2389999999999999987    6789999987753


No 16 
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.24  E-value=4.4e-12  Score=102.92  Aligned_cols=51  Identities=24%  Similarity=0.621  Sum_probs=42.1

Q ss_pred             CCCCccccccccccccc---------------ceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416          154 SVDMQTCGVCSKLLSEL---------------CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE  208 (312)
Q Consensus       154 ~~~~~~C~ICle~f~~~---------------~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~  208 (312)
                      ..++..|+||++.|.+.               ..+..++|||.||..||.+|+..    +.+||+||..+
T Consensus        34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~----~~~CP~Cr~~~   99 (106)
T 3dpl_R           34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREW   99 (106)
T ss_dssp             SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT----CSBCSSSCSBC
T ss_pred             CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc----CCcCcCCCCcc
Confidence            34678899999998833               13566899999999999999987    78999999875


No 17 
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.23  E-value=4.9e-12  Score=95.04  Aligned_cols=51  Identities=25%  Similarity=0.706  Sum_probs=42.6

Q ss_pred             CCCcccccccccccccceeEEec-cCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLT-CGHLYHADCLENITAEINKYDPACPVCTLGEKK  210 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~Lp-CGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~  210 (312)
                      .+...|+||++.|. .+++  ++ |||+||..||..|+....  ...||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~-~p~~--~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~~   64 (74)
T 2yur_A           13 PDELLCLICKDIMT-DAVV--IPCCGNSYCDECIRTALLESD--EHTCPTCHQNDVS   64 (74)
T ss_dssp             CGGGSCSSSCCCCT-TCEE--CSSSCCEECTTHHHHHHHHSS--SSCCSSSCCSSCC
T ss_pred             CCCCCCcCCChHHh-CCeE--cCCCCCHHHHHHHHHHHHhcC--CCcCCCCCCcCCC
Confidence            36779999999998 6766  89 999999999999998632  4689999986543


No 18 
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22  E-value=9.2e-12  Score=94.73  Aligned_cols=48  Identities=21%  Similarity=0.429  Sum_probs=41.7

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .+...|+||++.|. .+++  ++|||+||..||..|+..    ...||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQ-NPVV--TKCRHYFCESCALEHFRA----TPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCC-SEEE--CTTSCEEEHHHHHHHHHH----CSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhc-CeeE--ccCCCHhHHHHHHHHHHC----CCcCCCcCcccc
Confidence            35678999999998 5665  899999999999999987    778999998775


No 19 
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.20  E-value=4e-12  Score=95.82  Aligned_cols=49  Identities=14%  Similarity=0.280  Sum_probs=42.0

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .+...|+||++.|. ++++  ++|||+||..||..|+..   ....||+||..+.
T Consensus         6 ~~~~~C~IC~~~~~-~Pv~--~~CgH~fc~~Ci~~~~~~---~~~~CP~C~~~~~   54 (78)
T 1t1h_A            6 PEYFRCPISLELMK-DPVI--VSTGQTYERSSIQKWLDA---GHKTCPKSQETLL   54 (78)
T ss_dssp             SSSSSCTTTSCCCS-SEEE--ETTTEEEEHHHHHHHHTT---TCCBCTTTCCBCS
T ss_pred             cccCCCCCcccccc-CCEE--cCCCCeecHHHHHHHHHH---CcCCCCCCcCCCC
Confidence            36789999999998 6776  799999999999999964   2678999998764


No 20 
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.20  E-value=5.8e-12  Score=92.38  Aligned_cols=49  Identities=22%  Similarity=0.563  Sum_probs=41.0

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK  210 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~  210 (312)
                      +...|+||++.+. .+ +..++|||.||..||..|+..    ...||+||..+..
T Consensus         4 ~~~~C~IC~~~~~-~~-~~~~~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPS-NY-SMALPCLHAFCYVCITRWIRQ----NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCC-SC-EEETTTTEEESTTHHHHHHHH----SCSTTTTCCCCCC
T ss_pred             CCCCCeeCCcccc-CC-cEecCCCCeeHHHHHHHHHhC----cCcCcCCChhhHh
Confidence            5678999999988 33 234899999999999999987    6799999987753


No 21 
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.20  E-value=6.3e-12  Score=99.12  Aligned_cols=48  Identities=23%  Similarity=0.786  Sum_probs=40.7

Q ss_pred             CCcccccccccccccceeEEe-ccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416          156 DMQTCGVCSKLLSELCVVAVL-TCGHLYHADCLENITAEINKYDPACPVCTLGEKK  210 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~L-pCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~  210 (312)
                      +...|+||++.|. .+++  + +|||.||..||..|+..    ...||+||..+..
T Consensus        21 ~~~~C~IC~~~~~-~p~~--~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFN-IAMI--IPQCSHNYCSLCIRKFLSY----KTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCS-SEEE--CTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhC-CcCE--ECCCCCHhhHHHHHHHHHC----CCCCCCCCCcCCh
Confidence            4568999999998 5554  5 89999999999999976    6789999987754


No 22 
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.20  E-value=3.5e-12  Score=106.86  Aligned_cols=49  Identities=24%  Similarity=0.621  Sum_probs=41.9

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKT  211 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~  211 (312)
                      ++..|+||++.|. .+++  ++|||.||..||..|+..    ...||+||..+...
T Consensus        52 ~~~~C~iC~~~~~-~~~~--~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           52 NELQCIICSEYFI-EAVT--LNCAHSFCSYCINEWMKR----KIECPICRKDIKSK  100 (138)
T ss_dssp             HHSBCTTTCSBCS-SEEE--ETTSCEEEHHHHHHHTTT----CSBCTTTCCBCCCE
T ss_pred             ccCCCcccCcccC-CceE--CCCCCCccHHHHHHHHHc----CCcCCCCCCcCCCC
Confidence            4568999999998 6665  899999999999999976    77899999887543


No 23 
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19  E-value=2.1e-11  Score=93.28  Aligned_cols=54  Identities=26%  Similarity=0.586  Sum_probs=42.4

Q ss_pred             CCCcccccccccccccce-eEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~v-v~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .+...|+||++.|.+... ...++|||.||..||..|+.... ....||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~   67 (88)
T 2ct2_A           13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI-NGVRCPFCSKITR   67 (88)
T ss_dssp             CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS-SCBCCTTTCCCBC
T ss_pred             cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC-CCcCCCCCCCccc
Confidence            367789999999984332 44589999999999999998631 2478999997663


No 24 
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.18  E-value=1.5e-11  Score=95.53  Aligned_cols=50  Identities=14%  Similarity=0.078  Sum_probs=44.3

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKT  211 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~  211 (312)
                      .+...|+||++.|. ++|+  ++|||+|+..||..|+..    ..+||+|+..+...
T Consensus        12 p~~~~CpI~~~~m~-dPV~--~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~~   61 (85)
T 2kr4_A           12 PDEFRDPLMDTLMT-DPVR--LPSGTVMDRSIILRHLLN----SPTDPFNRQMLTES   61 (85)
T ss_dssp             CTTTBCTTTCSBCS-SEEE--CTTSCEEEHHHHHHHHHH----CSBCTTTCCBCCGG
T ss_pred             chheECcccCchhc-CCeE--CCCCCEECHHHHHHHHhc----CCCCCCCcCCCChH
Confidence            37889999999999 8888  899999999999999986    67999999877543


No 25 
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18  E-value=1.4e-11  Score=90.24  Aligned_cols=49  Identities=22%  Similarity=0.540  Sum_probs=41.6

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .+...|+||++.|. .+++  ++|||+||..||..|+..   ....||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~   61 (66)
T 2ecy_A           13 EDKYKCEKCHLVLC-SPKQ--TECGHRFCESCMAALLSS---SSPKCTACQESIV   61 (66)
T ss_dssp             CCCEECTTTCCEES-SCCC--CSSSCCCCHHHHHHHHTT---SSCCCTTTCCCCC
T ss_pred             CcCCCCCCCChHhc-CeeE--CCCCCHHHHHHHHHHHHh---CcCCCCCCCcCCC
Confidence            36789999999998 6766  899999999999999953   2678999998764


No 26 
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17  E-value=1e-11  Score=92.15  Aligned_cols=51  Identities=24%  Similarity=0.556  Sum_probs=41.6

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .+...|+||++.|. .+++  ++|||.||..||..|+... .....||+||..+.
T Consensus        18 ~~~~~C~IC~~~~~-~~~~--~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~~   68 (73)
T 2ysl_A           18 QEEVICPICLDILQ-KPVT--IDCGHNFCLKCITQIGETS-CGFFKCPLCKTSVR   68 (73)
T ss_dssp             CCCCBCTTTCSBCS-SEEE--CTTCCEEEHHHHHHHCSSS-CSCCCCSSSCCCCC
T ss_pred             ccCCEeccCCcccC-CeEE--cCCCChhhHHHHHHHHHcC-CCCCCCCCCCCcCC
Confidence            36778999999998 5655  7999999999999999631 12678999998764


No 27 
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17  E-value=1.7e-11  Score=89.42  Aligned_cols=51  Identities=24%  Similarity=0.462  Sum_probs=40.4

Q ss_pred             CCCcccccccc-ccccccee--EEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSK-LLSELCVV--AVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle-~f~~~~vv--~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      +++..|+||++ .|. .++.  .+++|||+||..||.+|+...   ...||+||..+.
T Consensus         1 m~~~~C~IC~~~~~~-~~~~~~~~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~   54 (65)
T 1g25_A            1 MDDQGCPRCKTTKYR-NPSLKLMVNVCGHTLCESCVDLLFVRG---AGNCPECGTPLR   54 (65)
T ss_dssp             CCTTCCSTTTTHHHH-CSSCCEEECTTCCCEEHHHHHHHHHTT---SSSCTTTCCCCS
T ss_pred             CCCCcCCcCCCCccC-CCccCeecCCCCCHhHHHHHHHHHHcC---CCcCCCCCCccc
Confidence            36778999999 787 4432  347999999999999998652   568999998774


No 28 
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15  E-value=1.9e-11  Score=88.54  Aligned_cols=46  Identities=26%  Similarity=0.624  Sum_probs=38.5

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC  204 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvC  204 (312)
                      .+...|+||++.|. .+++  ++|||+||..||.+|+.... ....||+|
T Consensus        18 ~~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQ-KPVT--IDCGHNFCLKCITQIGETSC-GFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCS-SCEE--CTTSSEECHHHHHHHHHHCS-SCCCCSCC
T ss_pred             ccCCCCCcCCchhC-CeEE--eCCCCcchHHHHHHHHHcCC-CCCcCcCC
Confidence            36778999999998 6666  79999999999999998521 26689998


No 29 
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.14  E-value=1.6e-11  Score=100.73  Aligned_cols=49  Identities=22%  Similarity=0.479  Sum_probs=41.7

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK  210 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~  210 (312)
                      +...|+||++.|. .+++  ++|||.||..||..|+..   ....||+||..+..
T Consensus        51 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVF-RPIT--TVCQHNVCKDCLDRSFRA---QVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCS-SEEE--CTTSCEEEHHHHHHHHHT---TCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHc-CcEE--eeCCCcccHHHHHHHHhH---CcCCCCCCCccCCC
Confidence            5678999999998 6766  899999999999999974   25589999987754


No 30 
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.13  E-value=1.6e-11  Score=97.62  Aligned_cols=49  Identities=20%  Similarity=0.449  Sum_probs=40.2

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      +...|+||++.|. .+ +..++|||+||..||..|+...   ...||+||..+.
T Consensus        21 ~~~~C~IC~~~~~-~p-~~~~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~~   69 (100)
T 3lrq_A           21 EVFRCFICMEKLR-DA-RLCPHCSKLCCFSCIRRWLTEQ---RAQCPHCRAPLQ   69 (100)
T ss_dssp             HHTBCTTTCSBCS-SE-EECTTTCCEEEHHHHHHHHHHT---CSBCTTTCCBCC
T ss_pred             CCCCCccCCcccc-Cc-cccCCCCChhhHHHHHHHHHHC---cCCCCCCCCcCC
Confidence            5678999999998 33 2237899999999999999872   268999998774


No 31 
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.12  E-value=2.7e-11  Score=97.07  Aligned_cols=48  Identities=19%  Similarity=0.522  Sum_probs=41.3

Q ss_pred             CCcccccccccccccceeEEe-ccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416          156 DMQTCGVCSKLLSELCVVAVL-TCGHLYHADCLENITAEINKYDPACPVCTLGEKK  210 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~L-pCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~  210 (312)
                      +...|+||++.|. .+++  + +|||.||..||..|+..    ...||+||..+..
T Consensus        14 ~~~~C~IC~~~~~-~p~~--~~~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           14 PHLMCVLCGGYFI-DATT--IIECLHSFCKTCIVRYLET----SKYCPICDVQVHK   62 (108)
T ss_dssp             GGTBCTTTSSBCS-SEEE--ETTTCCEEEHHHHHHHHTS----CSBCTTTCCBSCS
T ss_pred             CcCCCccCChHHh-CcCE--eCCCCChhhHHHHHHHHHh----CCcCcCCCccccc
Confidence            6778999999998 5555  6 99999999999999976    6789999987754


No 32 
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.11  E-value=2.8e-11  Score=96.96  Aligned_cols=49  Identities=14%  Similarity=0.092  Sum_probs=43.7

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK  210 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~  210 (312)
                      .+...|+||++.|. +||+  ++|||+||..||..|+..    ..+||+|+..+..
T Consensus        27 p~~~~CpI~~~~m~-dPV~--~~cGhtf~r~~I~~~l~~----~~~cP~~~~~l~~   75 (100)
T 2kre_A           27 PDEFRDPLMDTLMT-DPVR--LPSGTIMDRSIILRHLLN----SPTDPFNRQTLTE   75 (100)
T ss_dssp             STTTBCTTTCSBCS-SEEE--ETTTEEEEHHHHHHHTTS----CSBCSSSCCBCCT
T ss_pred             cHhhCCcCccCccc-CCeE--CCCCCEEchHHHHHHHHc----CCCCCCCCCCCCh
Confidence            37889999999999 8888  899999999999999975    6789999987754


No 33 
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11  E-value=7.6e-12  Score=92.39  Aligned_cols=47  Identities=23%  Similarity=0.724  Sum_probs=40.2

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .+...|+||++.+.+    ..++|||.||..||..|+..    ...||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~   59 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDR----HRNCPICRLQMT   59 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCC----CSSCHHHHHCTT
T ss_pred             CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHC----cCcCCCcCCccc
Confidence            367789999999984    44899999999999999975    779999997664


No 34 
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.11  E-value=3.6e-11  Score=95.99  Aligned_cols=50  Identities=16%  Similarity=0.026  Sum_probs=44.1

Q ss_pred             CCCcccccccccccccceeEEeccC-CcchHHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCG-HLYHADCLENITAEINKYDPACPVCTLGEKKT  211 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCG-H~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~  211 (312)
                      .+...|+||+++|. +||+  ++|| |+|++.||..|+..    ..+||+|+..+...
T Consensus        20 p~~~~CpI~~~~m~-dPV~--~~cG~htf~r~cI~~~l~~----~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           20 CDEFLDPIMSTLMC-DPVV--LPSSRVTVDRSTIARHLLS----DQTDPFNRSPLTMD   70 (98)
T ss_dssp             CTTTBCTTTCSBCS-SEEE--CTTTCCEEEHHHHHHHTTT----SCBCTTTCSBCCTT
T ss_pred             cHhcCCcCcccccc-CCeE--CCCCCeEECHHHHHHHHHh----CCCCCCCCCCCChh
Confidence            37889999999999 8888  8999 99999999999976    67899999877543


No 35 
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.09  E-value=7.2e-11  Score=89.20  Aligned_cols=51  Identities=25%  Similarity=0.507  Sum_probs=41.8

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcC--CCCCCCCCCCCCCc
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEIN--KYDPACPVCTLGEK  209 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~--~~~~~CPvCR~~~~  209 (312)
                      +...|+||++.|. .+++  ++|||.||..||..|+....  .....||+||..+.
T Consensus        18 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecw_A           18 EEVTCPICLELLK-EPVS--ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP   70 (85)
T ss_dssp             TTTSCTTTCSCCS-SCEE--CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred             cCCCCcCCChhhC-ccee--CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence            5678999999998 6665  89999999999999998621  12568999998764


No 36 
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08  E-value=4.3e-11  Score=92.43  Aligned_cols=52  Identities=17%  Similarity=0.459  Sum_probs=41.8

Q ss_pred             CCCcccccccccccccceeEEeccC-----CcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCG-----HLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCG-----H~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .+...|.||++.|.++..+ ++||+     |.||.+||++|+....  ...||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~--~~~CplCr~~~~   69 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSD--TRCCELCKYEFI   69 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHC--CSBCSSSCCBCC
T ss_pred             CCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCC--CCCCCCCCCeee
Confidence            3667899999998754444 58996     9999999999998743  468999998764


No 37 
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.08  E-value=1.3e-11  Score=102.02  Aligned_cols=50  Identities=24%  Similarity=0.630  Sum_probs=1.7

Q ss_pred             CCCcccccccccccccc---------------eeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSELC---------------VVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE  208 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~---------------vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~  208 (312)
                      .+...|+||++.|.+..               .+..++|||.||..||.+|+..    ..+||+||..+
T Consensus        46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~~  110 (117)
T 4a0k_B           46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREW  110 (117)
T ss_dssp             CCC------------------------------------------------------------------
T ss_pred             CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc----CCcCCCCCCee
Confidence            46678999999997321               2333589999999999999987    77999999775


No 38 
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08  E-value=4.8e-11  Score=84.49  Aligned_cols=46  Identities=30%  Similarity=0.735  Sum_probs=37.9

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC  204 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvC  204 (312)
                      .+...|+||++.|. .+++  ++|||+||..||.+|+.... ....||+|
T Consensus        13 ~~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLK-EPVI--IECGHNFCKACITRWWEDLE-RDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCS-SCCC--CSSCCCCCHHHHHHHTTSSC-CSCCCSCC
T ss_pred             ccCCCCccCCcccC-ccEe--CCCCCccCHHHHHHHHHhcC-CCCCCCCC
Confidence            36778999999998 6666  89999999999999975311 26789998


No 39 
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07  E-value=1.2e-10  Score=91.72  Aligned_cols=50  Identities=24%  Similarity=0.458  Sum_probs=41.7

Q ss_pred             CCCcccccccccccccceeEEec-cCCcchHHHHHHHHHhcC--CCCCCCCC--CCCC
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLT-CGHLYHADCLENITAEIN--KYDPACPV--CTLG  207 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~Lp-CGH~FH~~CI~~Wl~~~~--~~~~~CPv--CR~~  207 (312)
                      .+...|+||++.|. +||+  ++ |||+|+..||..|+....  .....||+  |+..
T Consensus         5 ~~~~~CPI~~~~~~-dPV~--~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMK-KPVK--NKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCS-SEEE--ESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhc-CCEE--cCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            47789999999999 7888  86 999999999999998631  22568999  9855


No 40 
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.06  E-value=3.6e-11  Score=90.28  Aligned_cols=52  Identities=29%  Similarity=0.599  Sum_probs=42.5

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcC---CCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEIN---KYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~---~~~~~CPvCR~~~~  209 (312)
                      .+...|+||++.|. .+++  ++|||.||..||..|+....   .....||+||..+.
T Consensus        10 ~~~~~C~IC~~~~~-~p~~--l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~   64 (79)
T 2egp_A           10 QEEVTCPICLELLT-EPLS--LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS   64 (79)
T ss_dssp             CCCCEETTTTEECS-SCCC--CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred             ccCCCCcCCCcccC-CeeE--CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence            36789999999998 6766  89999999999999986521   12568999998774


No 41 
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.06  E-value=5.2e-11  Score=101.67  Aligned_cols=50  Identities=24%  Similarity=0.417  Sum_probs=42.2

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKT  211 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~  211 (312)
                      +...|+||++.|. .+++  ++|||.||..||..|+..   ....||+||..+...
T Consensus        77 ~~~~C~IC~~~~~-~pv~--~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVY-QPVT--TECFHNVCKDCLQRSFKA---QVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCS-SEEE--CTTSCEEEHHHHHHHHHT---TCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhc-CCEE--cCCCCchhHHHHHHHHHh---CCCcCCCCCccCCCC
Confidence            5578999999998 6776  899999999999999975   245899999877643


No 42 
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.06  E-value=9.9e-11  Score=100.43  Aligned_cols=50  Identities=22%  Similarity=0.490  Sum_probs=40.7

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK  210 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~  210 (312)
                      +...|+||++.|. .+++ .++|||+||..||..|+...   ...||+||..+..
T Consensus        53 ~~~~C~IC~~~~~-~p~~-~~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           53 SELMCPICLDMLK-NTMT-TKECLHRFCADCIITALRSG---NKECPTCRKKLVS  102 (165)
T ss_dssp             HHHBCTTTSSBCS-SEEE-ETTTCCEEEHHHHHHHHHTT---CCBCTTTCCBCCS
T ss_pred             CCCCCcccChHhh-CcCE-eCCCCChhHHHHHHHHHHhC---cCCCCCCCCcCCC
Confidence            5568999999998 4544 24999999999999999752   5689999988754


No 43 
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05  E-value=8.5e-11  Score=88.80  Aligned_cols=51  Identities=31%  Similarity=0.736  Sum_probs=41.9

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhc--CCCCCCCCCCCCCCc
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEI--NKYDPACPVCTLGEK  209 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~--~~~~~~CPvCR~~~~  209 (312)
                      +...|+||++.|. .+++  ++|||.||..||..|+...  ......||+||..+.
T Consensus        18 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecv_A           18 EEVTCPICLELLT-QPLS--LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ   70 (85)
T ss_dssp             CCCCCTTTCSCCS-SCBC--CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred             CCCCCCCCCcccC-Ccee--CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence            6678999999998 6666  8999999999999999761  122678999997764


No 44 
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05  E-value=6.1e-11  Score=96.49  Aligned_cols=51  Identities=24%  Similarity=0.645  Sum_probs=41.8

Q ss_pred             CCCccccccccccccc----ceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSEL----CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~----~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .+...|+||++.|.+.    ..+..++|||+||..||.+|+..    ...||+||..+.
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~   59 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKIN   59 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT----CSBCTTTCCBCT
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh----CCCCCCCCCcCc
Confidence            3678899999999832    22355899999999999999976    679999998764


No 45 
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.04  E-value=9.2e-11  Score=95.55  Aligned_cols=50  Identities=22%  Similarity=0.408  Sum_probs=42.1

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK  210 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~  210 (312)
                      .+...|+||++.|. .+++  ++|||+||..||..|+...   ...||+||..+..
T Consensus        16 ~~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~   65 (118)
T 3hct_A           16 ESKYECPICLMALR-EAVQ--TPCGHRFCKACIIKSIRDA---GHKCPVDNEILLE   65 (118)
T ss_dssp             CGGGBCTTTCSBCS-SEEE--CTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCG
T ss_pred             CCCCCCCcCChhhc-CeEE--CCcCChhhHHHHHHHHhhC---CCCCCCCCCCcCH
Confidence            36779999999998 6655  8999999999999999873   3489999988754


No 46 
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.01  E-value=8.9e-11  Score=93.76  Aligned_cols=50  Identities=20%  Similarity=0.553  Sum_probs=40.9

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      +...|+||++.|. .+++  ++|||.||..||..|+.... ....||+||..+.
T Consensus        20 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~   69 (112)
T 1jm7_A           20 KILECPICLELIK-EPVS--TKCDHIFCKFCMLKLLNQKK-GPSQCPLCKNDIT   69 (112)
T ss_dssp             HHTSCSSSCCCCS-SCCB--CTTSCCCCSHHHHHHHHSSS-SSCCCTTTSCCCC
T ss_pred             CCCCCcccChhhc-CeEE--CCCCCHHHHHHHHHHHHhCC-CCCCCcCCCCcCC
Confidence            4567999999998 6766  89999999999999997522 2358999998664


No 47 
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.01  E-value=6e-11  Score=95.91  Aligned_cols=50  Identities=24%  Similarity=0.606  Sum_probs=41.9

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK  210 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~  210 (312)
                      .+...|+||++.|. .+++  |+|||.||..||..|+..   ....||+||..+..
T Consensus        13 ~~~~~C~iC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~---~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILV-EPVT--LPCNHTLCKPCFQSTVEK---ASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCS-SCEE--CTTSCEECHHHHCCCCCT---TTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccC-ceeE--cCCCCHHhHHHHHHHHhH---CcCCCCCCCcccCc
Confidence            35678999999998 6766  899999999999999864   25689999987753


No 48 
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97  E-value=6.3e-11  Score=96.42  Aligned_cols=45  Identities=27%  Similarity=0.738  Sum_probs=39.1

Q ss_pred             CCcccccccccccccceeEEe-ccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          156 DMQTCGVCSKLLSELCVVAVL-TCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~L-pCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      +...|+||++.|. .+++  + +|||+||..||..|+.      ..||+||..+.
T Consensus        21 ~~~~C~IC~~~~~-~pv~--~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~   66 (117)
T 1jm7_B           21 KLLRCSRCTNILR-EPVC--LGGCEHIFCSNCVSDCIG------TGCPVCYTPAW   66 (117)
T ss_dssp             HTTSCSSSCSCCS-SCBC--CCSSSCCBCTTTGGGGTT------TBCSSSCCBCS
T ss_pred             hCCCCCCCChHhh-CccE--eCCCCCHHHHHHHHHHhc------CCCcCCCCcCc
Confidence            5678999999998 7777  7 8999999999999985      47999998764


No 49 
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.97  E-value=4e-10  Score=102.38  Aligned_cols=51  Identities=14%  Similarity=0.114  Sum_probs=43.8

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKT  211 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~  211 (312)
                      .+...|+||++.|. +||+  ++|||+||..||..|+...   ..+||+|+..+...
T Consensus       206 ~~~~~c~i~~~~~~-dPv~--~~~gh~f~~~~i~~~~~~~---~~~cP~~~~~~~~~  256 (281)
T 2c2l_A          206 PDYLCGKISFELMR-EPCI--TPSGITYDRKDIEEHLQRV---GHFNPVTRSPLTQE  256 (281)
T ss_dssp             CSTTBCTTTCSBCS-SEEE--CSSCCEEETTHHHHHHHHT---CSSCTTTCCCCCGG
T ss_pred             CcccCCcCcCCHhc-CCeE--CCCCCEECHHHHHHHHHHC---CCCCcCCCCCCchh
Confidence            47889999999999 8888  8999999999999999863   33599999888543


No 50 
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.96  E-value=1.8e-10  Score=84.76  Aligned_cols=54  Identities=19%  Similarity=0.383  Sum_probs=42.7

Q ss_pred             CCCcccccccccccccceeEEeccCCc-chHHHHHHHHHhcCCCCCCCCCCCCCCccchH
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTHK  213 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~-FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~k  213 (312)
                      .++..|.||++.+. +.++..+||||. ||.+|+..|+..    ...||+||..+....+
T Consensus         6 ~~~~~C~IC~~~~~-~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~~~i~   60 (64)
T 2vje_A            6 NAIEPCVICQGRPK-NGCIVHGKTGHLMACFTCAKKLKKR----NKPCPVCRQPIQMIVL   60 (64)
T ss_dssp             GGGSCCTTTSSSCS-CEEEEETTEEEEEECHHHHHHHHHT----TCCCTTTCCCCCEEEE
T ss_pred             CCcCCCCcCCCCCC-CEEEECCCCCChhhHHHHHHHHHHc----CCcCCCcCcchhceEe
Confidence            46778999999877 444423499999 899999999976    6789999998865543


No 51 
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.93  E-value=3.8e-10  Score=91.24  Aligned_cols=49  Identities=22%  Similarity=0.516  Sum_probs=41.4

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK  210 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~  210 (312)
                      +...|+||++.|. .+++  ++|||.||..||..|+...   ...||+||..+..
T Consensus        22 ~~~~C~IC~~~~~-~p~~--~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           22 KSISCQICEHILA-DPVE--TSCKHLFCRICILRCLKVM---GSYCPSCRYPCFP   70 (116)
T ss_dssp             HHTBCTTTCSBCS-SEEE--CTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCG
T ss_pred             CCCCCCCCCcHhc-CcEE--cCCCCcccHHHHHHHHhHC---cCcCCCCCCCCCH
Confidence            4568999999998 6666  8999999999999999862   4689999987753


No 52 
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.91  E-value=3.3e-10  Score=86.91  Aligned_cols=53  Identities=21%  Similarity=0.416  Sum_probs=40.4

Q ss_pred             CCCcccccccccccccceeEEec--cCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLT--CGHLYHADCLENITAEINKYDPACPVCTLGEKKT  211 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~Lp--CGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~  211 (312)
                      .++..|+||++.+...+. ..+|  |||.||..|+..++..   ....||+||..+...
T Consensus         9 ~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~---~~~~CP~CR~~~~~~   63 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTD---ENGLCPACRKPYPED   63 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTS---SCSBCTTTCCBCSSC
T ss_pred             ccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhc---CCCCCCCCCCccCCC
Confidence            477899999999863222 2244  9999999999998753   267899999887543


No 53 
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.91  E-value=4.8e-10  Score=91.15  Aligned_cols=51  Identities=24%  Similarity=0.645  Sum_probs=42.0

Q ss_pred             CCCccccccccccccc----ceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSEL----CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~----~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .+...|+||++.|.+.    .....++|||+||..||++|+..    ...||+||..+.
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~  124 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN----ANTCPTCRKKIN  124 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH----CSBCTTTCCBCC
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc----CCCCCCCCCcCC
Confidence            4677899999998732    22345899999999999999987    779999998774


No 54 
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.84  E-value=6.9e-10  Score=81.35  Aligned_cols=53  Identities=21%  Similarity=0.419  Sum_probs=42.1

Q ss_pred             CCcccccccccccccceeEEeccCCc-chHHHHHHHHHhcCCCCCCCCCCCCCCccchH
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTHK  213 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~-FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~k  213 (312)
                      ....|.||++.+. +.++..+||||. ||..|+..|...    ...||+||..+....+
T Consensus         6 ~~~~C~IC~~~~~-~~~~~~~pCgH~~~C~~C~~~~~~~----~~~CPiCR~~i~~~i~   59 (63)
T 2vje_B            6 LLKPCSLCEKRPR-DGNIIHGRTGHLVTCFHCARRLKKA----GASCPICKKEIQLVIK   59 (63)
T ss_dssp             GGSBCTTTSSSBS-CEEEEETTEEEEEECHHHHHHHHHT----TCBCTTTCCBCCEEEE
T ss_pred             cCCCCcccCCcCC-CeEEEecCCCCHhHHHHHHHHHHHh----CCcCCCcCchhhceEE
Confidence            5568999999876 445533499998 999999999876    5789999998865543


No 55 
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.82  E-value=3e-09  Score=93.84  Aligned_cols=64  Identities=14%  Similarity=0.151  Sum_probs=48.5

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCccchHhHHHHHHHHHH
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSERALKSEME  224 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~kl~~~~l~~el~  224 (312)
                      .+...||||++.|. +||+  ++|||+|+..||..|+...   ..+||+|+..+......-+..|...++
T Consensus       104 p~~f~CPI~~elm~-DPV~--~~~Ghtfer~~I~~~l~~~---~~tcP~t~~~l~~~~L~pN~~Lk~~Ie  167 (179)
T 2f42_A          104 PDYLCGKISFELMR-EPCI--TPSGITYDRKDIEEHLQRV---GHFDPVTRSPLTQDQLIPNLAMKEVID  167 (179)
T ss_dssp             CGGGBCTTTCSBCS-SEEE--CTTSCEEEHHHHHHHHHHT---CSBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred             cHhhcccCccccCC-CCeE--CCCCCEECHHHHHHHHHhC---CCCCCCCcCCCChhhCcchHHHHHHHH
Confidence            47889999999999 8888  8999999999999999863   237999998775433222333444333


No 56 
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.81  E-value=6.2e-10  Score=79.50  Aligned_cols=45  Identities=24%  Similarity=0.512  Sum_probs=38.0

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .+...|+||++.|. .+++  |+|||.||..||..|       ...||+||..+.
T Consensus         4 ~~~~~C~IC~~~~~-~p~~--l~CgH~fC~~Ci~~~-------~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAEAK-CPKL--LPCLHTLCSGCLEAS-------GMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSSCB-CCSC--STTSCCSBTTTCSSS-------SSSCSSCCSSSS
T ss_pred             ccCCCceEeCCccC-CeEE--cCCCCcccHHHHccC-------CCCCCcCCcEee
Confidence            46778999999998 6766  899999999999873       557999998764


No 57 
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.80  E-value=5.4e-10  Score=84.20  Aligned_cols=46  Identities=26%  Similarity=0.603  Sum_probs=38.1

Q ss_pred             CCcccccccccccccceeEEeccCCc-chHHHHHHHHHhcCCCCCCCCCCCCCCccch
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTH  212 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~-FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~  212 (312)
                      +...|+||++.+. .++.  +||||. ||..|+..|        ..||+||..+....
T Consensus        23 ~~~~C~iC~~~~~-~~~~--~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~~   69 (74)
T 4ic3_A           23 EEKLCKICMDRNI-AIVF--VPCGHLVTCKQCAEAV--------DKCPMCYTVITFKQ   69 (74)
T ss_dssp             HHTBCTTTSSSBC-CEEE--ETTCCBCCCHHHHTTC--------SBCTTTCCBCSEEE
T ss_pred             cCCCCCCCCCCCC-CEEE--cCCCChhHHHHhhhcC--------ccCCCcCcCccCcE
Confidence            4568999999987 5555  899999 999999988        36999998876544


No 58 
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.79  E-value=7.2e-10  Score=93.75  Aligned_cols=48  Identities=25%  Similarity=0.520  Sum_probs=40.4

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE  208 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~  208 (312)
                      .+...|+||++.|. .++.  ++|||.||..||..|+...   ...||+||..+
T Consensus        29 ~~~~~C~IC~~~~~-~pv~--~~CgH~FC~~Ci~~~~~~~---~~~CP~Cr~~~   76 (141)
T 3knv_A           29 EAKYLCSACRNVLR-RPFQ--AQCGHRYCSFCLASILSSG---PQNCAACVHEG   76 (141)
T ss_dssp             CGGGBCTTTCSBCS-SEEE--CTTSCEEEHHHHHHHGGGS---CEECHHHHHTT
T ss_pred             CcCcCCCCCChhhc-CcEE--CCCCCccCHHHHHHHHhcC---CCCCCCCCCcc
Confidence            36778999999998 6666  8999999999999999751   45899999754


No 59 
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.79  E-value=4.9e-09  Score=81.96  Aligned_cols=51  Identities=16%  Similarity=0.458  Sum_probs=38.9

Q ss_pred             CCcccccccccccccceeEEe-ccCCcchHHHHHHHHHhc---C-CCCCCCCC--CCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVL-TCGHLYHADCLENITAEI---N-KYDPACPV--CTLG  207 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~L-pCGH~FH~~CI~~Wl~~~---~-~~~~~CPv--CR~~  207 (312)
                      +...|+||++.+. .++...| +|||.||.+|+.+++...   . .....||.  |+..
T Consensus         4 ~~~~C~IC~~~~~-~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYP-VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCB-GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccc-cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            5678999999998 4444334 799999999999988642   1 12458999  9987


No 60 
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.78  E-value=3e-09  Score=91.42  Aligned_cols=50  Identities=22%  Similarity=0.408  Sum_probs=42.3

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK  210 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~  210 (312)
                      .+...|+||++.|. .++.  ++|||+||..||..|+...   ...||+||..+..
T Consensus        16 ~~~~~C~IC~~~~~-~pv~--~~CgH~fC~~Ci~~~~~~~---~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           16 ESKYECPICLMALR-EAVQ--TPCGHRFCKACIIKSIRDA---GHKCPVDNEILLE   65 (170)
T ss_dssp             CGGGBCTTTCSBCS-SEEE--CTTSCEEEHHHHHHHHHHH---CSBCTTTCCBCCG
T ss_pred             CCCCCCCCCChhhc-CcEE--CCCCCHHHHHHHHHHHHhC---CCCCCCCccCcch
Confidence            46789999999998 6665  8999999999999999763   3489999987754


No 61 
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75  E-value=5.2e-09  Score=79.86  Aligned_cols=49  Identities=27%  Similarity=0.549  Sum_probs=39.2

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE  208 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~  208 (312)
                      ....|+||.+.|..+..-  ..|+|.||..||.+||+...  ..+||+|+...
T Consensus        14 ~i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~--~~~CP~Cr~~w   62 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYW   62 (74)
T ss_dssp             SSCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCS--SCCCTTTCSCC
T ss_pred             CCCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcC--CCCCCCCcCcC
Confidence            567899999999844333  37999999999999997622  37899999765


No 62 
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.75  E-value=3.3e-09  Score=103.58  Aligned_cols=49  Identities=27%  Similarity=0.584  Sum_probs=40.5

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK  210 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~  210 (312)
                      ....|+||++.+. .+++  ++|||.||..||..|+..   ....||+||..+..
T Consensus       331 ~~~~C~ICle~~~-~pv~--lpCGH~FC~~Ci~~wl~~---~~~~CP~CR~~i~~  379 (389)
T 2y1n_A          331 TFQLCKICAENDK-DVKI--EPCGHLMCTSCLTSWQES---EGQGCPFCRCEIKG  379 (389)
T ss_dssp             SSSBCTTTSSSBC-CEEE--ETTCCEECHHHHHHHHHH---TCSBCTTTCCBCCE
T ss_pred             CCCCCCccCcCCC-CeEE--eCCCChhhHHHHHHHHhc---CCCCCCCCCCccCC
Confidence            3468999999987 5554  899999999999999983   16789999987754


No 63 
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69  E-value=3.6e-09  Score=79.65  Aligned_cols=46  Identities=26%  Similarity=0.560  Sum_probs=36.9

Q ss_pred             CCcccccccccccccceeEEeccCCc-chHHHHHHHHHhcCCCCCCCCCCCCCCccch
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTH  212 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~-FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~  212 (312)
                      +...|+||++.+. .+++  +||||. ||..|+..        ...||+||..+....
T Consensus        24 ~~~~C~IC~~~~~-~~~~--~pCgH~~~C~~C~~~--------~~~CP~Cr~~i~~~~   70 (75)
T 2ecg_A           24 EEKLCKICMDRNI-AIVF--VPCGHLVTCKQCAEA--------VDKCPMCYTVITFKQ   70 (75)
T ss_dssp             HHHSCSSSCSSCC-CBCC--SSSCCCCBCHHHHHH--------CSBCTTTCCBCCCCC
T ss_pred             CCCCCCcCCCCCC-CEEE--ecCCCHHHHHHHhhC--------CCCCccCCceecCcE
Confidence            3456999999987 6666  899999 99999953        357999998876544


No 64 
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.63  E-value=9.3e-09  Score=95.62  Aligned_cols=51  Identities=20%  Similarity=0.376  Sum_probs=41.8

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCC--CCCCCc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPV--CTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPv--CR~~~~  209 (312)
                      .....||||++.|. +||+ .+.|||+||+.||..|+...  ....||+  |+..+.
T Consensus       179 ~~el~CPIcl~~f~-DPVt-s~~CGHsFcR~cI~~~~~~~--~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          179 KIELTCPITCKPYE-APLI-SRKCNHVFDRDGIQNYLQGY--TTRDCPQAACSQVVS  231 (267)
T ss_dssp             BCCSBCTTTSSBCS-SEEE-ESSSCCEEEHHHHHHHSTTC--SCEECSGGGCSCEEC
T ss_pred             ceeeECcCccCccc-CCee-eCCCCCcccHHHHHHHHHhC--CCCCCCcccccCcCc
Confidence            47789999999998 7776 24899999999999999752  2468999  997654


No 65 
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57  E-value=2.2e-08  Score=74.57  Aligned_cols=50  Identities=26%  Similarity=0.522  Sum_probs=39.2

Q ss_pred             CCCcccccccccccccceeEEeccCCc-chHHHHHHHHHhcCCCCCCCCCCCCCCccchHhH
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTHKLS  215 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~-FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~kl~  215 (312)
                      .+...|.||++.+. ..++  +||||. ||..|+..        ...||+||..+....+++
T Consensus        13 ~~~~~C~IC~~~~~-~~v~--~pCgH~~~C~~C~~~--------~~~CP~CR~~i~~~~~i~   63 (68)
T 2ea5_A           13 ENSKDCVVCQNGTV-NWVL--LPCRHTCLCDGCVKY--------FQQCPMCRQFVQESFALS   63 (68)
T ss_dssp             CCSSCCSSSSSSCC-CCEE--TTTTBCCSCTTHHHH--------CSSCTTTCCCCCCEECCC
T ss_pred             CCCCCCCCcCcCCC-CEEE--ECCCChhhhHHHHhc--------CCCCCCCCcchhceEEee
Confidence            35778999999876 4444  899999 99999983        457999999887655443


No 66 
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.46  E-value=1.4e-08  Score=77.61  Aligned_cols=47  Identities=23%  Similarity=0.574  Sum_probs=37.2

Q ss_pred             CCcccccccccccccceeEEeccCCc-chHHHHHHHHHhcCCCCCCCCCCCCCCccchH
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTHK  213 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~-FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~k  213 (312)
                      +...|+||++.+. ..+.  +||||. ||..|+..|        ..||+||..+....+
T Consensus        17 ~~~~C~IC~~~~~-~~v~--~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~~~~   64 (79)
T 2yho_A           17 EAMLCMVCCEEEI-NSTF--CPCGHTVCCESCAAQL--------QSCPVCRSRVEHVQH   64 (79)
T ss_dssp             HHTBCTTTSSSBC-CEEE--ETTCBCCBCHHHHTTC--------SBCTTTCCBCCEEEE
T ss_pred             CCCEeEEeCcccC-cEEE--ECCCCHHHHHHHHHhc--------CcCCCCCchhhCeEE
Confidence            4557999999877 4444  899999 999999875        279999988765443


No 67 
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.43  E-value=9e-08  Score=69.97  Aligned_cols=45  Identities=13%  Similarity=0.208  Sum_probs=39.5

Q ss_pred             cccccccccccccceeEEe-ccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          158 QTCGVCSKLLSELCVVAVL-TCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       158 ~~C~ICle~f~~~~vv~~L-pCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      ..|+||++.+. ++++  + +|||+|.+.||++|+..    +..||+++..+.
T Consensus         4 ~~CpIs~~~m~-dPV~--~~~sG~~yer~~I~~~l~~----~~~cP~t~~~L~   49 (61)
T 2bay_A            4 MLCAISGKVPR-RPVL--SPKSRTIFEKSLLEQYVKD----TGNDPITNEPLS   49 (61)
T ss_dssp             CCCTTTCSCCS-SEEE--ETTTTEEEEHHHHHHHHHH----HSBCTTTCCBCC
T ss_pred             EEecCCCCCCC-CCEE--eCCCCcEEcHHHHHHHHHh----CCCCcCCcCCCC
Confidence            57999999999 7777  7 89999999999999987    456999997764


No 68 
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.39  E-value=2.5e-07  Score=67.52  Aligned_cols=50  Identities=24%  Similarity=0.498  Sum_probs=38.3

Q ss_pred             CCCcccccccccccccceeEEeccC--C---cchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCG--H---LYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCG--H---~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .+...|.||++... .+.  ++||.  |   .||..||++|+....  +..||+|+..+.
T Consensus         4 ~~~~~CrIC~~~~~-~~l--~~PC~C~gs~~~~H~~Cl~~W~~~~~--~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELG-NER--FRACGCTGELENVHRSCLSTWLTISR--NTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECS-CCC--CCSCCCSSGGGSCCHHHHHHHHHHHT--CSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCC-Cce--ecCcCCCCchhhhHHHHHHHHHHhCC--CCccCCCCCeee
Confidence            36678999998743 343  38965  4   899999999998643  578999997663


No 69 
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.34  E-value=5e-08  Score=93.87  Aligned_cols=48  Identities=31%  Similarity=0.652  Sum_probs=39.4

Q ss_pred             CCcccccccccccccceeEEeccCCc-chHHHHHHHHHhcCCCCCCCCCCCCCCccchHh
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHL-YHADCLENITAEINKYDPACPVCTLGEKKTHKL  214 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~-FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~kl  214 (312)
                      +...|+||++.+. .++.  |||||. ||..|+..|        ..||+||..+....++
T Consensus       294 ~~~~C~IC~~~~~-~~v~--lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~~~~i  342 (345)
T 3t6p_A          294 EERTCKVCMDKEV-SVVF--IPCGHLVVCQECAPSL--------RKCPICRGIIKGTVRT  342 (345)
T ss_dssp             TTCBCTTTSSSBC-CEEE--ETTCCEEECTTTGGGC--------SBCTTTCCBCCEEEEC
T ss_pred             CCCCCCccCCcCC-ceEE--cCCCChhHhHHHHhcC--------CcCCCCCCCccCeEEe
Confidence            5578999999988 5655  899999 999999987        3699999888655443


No 70 
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.17  E-value=2.2e-07  Score=89.46  Aligned_cols=55  Identities=22%  Similarity=0.328  Sum_probs=39.3

Q ss_pred             CCCcccccccccccccceeE-----EeccCCcchHHHHHHHHHhcCC-------CCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSELCVVA-----VLTCGHLYHADCLENITAEINK-------YDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~-----~LpCGH~FH~~CI~~Wl~~~~~-------~~~~CPvCR~~~~  209 (312)
                      .....|+||++.+.+...+-     -..|||.||..||.+|+.....       -...||+||.++.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            36678999999988522221     1469999999999999985221       0146999997653


No 71 
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.86  E-value=8.7e-06  Score=65.31  Aligned_cols=47  Identities=21%  Similarity=0.494  Sum_probs=37.3

Q ss_pred             ccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 021416          159 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEKK  210 (312)
Q Consensus       159 ~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~  210 (312)
                      -|.+|.-.+.  --.+.+||.|+||.+|+..|..+.   ...||.|+..+..
T Consensus         3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~---~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKG---DKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTT---CCBCTTTCCBCSE
T ss_pred             ecCccCCCeE--EEeeeccccccHHHHHHHHHHhcc---CCCCcCcCCeeee
Confidence            4888987766  234558999999999999998652   6789999987743


No 72 
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.27  E-value=6.9e-05  Score=68.48  Aligned_cols=95  Identities=16%  Similarity=0.343  Sum_probs=58.9

Q ss_pred             CCCccchHHhhhcccccccccCC-cccCCCHHHHhhcccccccCCCCCCcccccccccccccceeEEeccCCcchHHHHH
Q 021416          110 GWSMNAFSELMATSHKERWSFDS-ESLGFNHEKIARSCSRVSASSSVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLE  188 (312)
Q Consensus       110 gw~~~syeeLlal~ererws~~~-e~~G~~~e~I~~~~~~~s~s~~~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~  188 (312)
                      +....--|+|+.---.++|-... ..+++....|-.+...+..........|.||.+....+..-  -.|+|.||..|+.
T Consensus       132 ~l~~~eae~lL~~lv~~gWl~~~~g~~~l~~R~l~El~~~l~~~~~~~i~~C~iC~~iv~~g~~C--~~C~~~~H~~C~~  209 (238)
T 3nw0_A          132 KMRKKEAEQVLQKFVQNKWLIEKEGEFTLHGRAILEMEQYIRETYPDAVKICNICHSLLIQGQSC--ETCGIRMHLPCVA  209 (238)
T ss_dssp             CCCHHHHHHHHHHHHHTTSEEEETTEEEECHHHHHHHHHHHHHHCTTTCCBCTTTCSBCSSCEEC--SSSCCEECHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcchhhhCCEEEecCccHHHHHHHHHHhcCCCCCcCcchhhHHhCCccc--CccChHHHHHHHH
Confidence            33334456666655555665432 33445555554444332222223577899999998843222  2399999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCC
Q 021416          189 NITAEINKYDPACPVCTLGE  208 (312)
Q Consensus       189 ~Wl~~~~~~~~~CPvCR~~~  208 (312)
                      .|+....  ...||.|+...
T Consensus       210 ~~~~~~~--~~~CP~C~~~W  227 (238)
T 3nw0_A          210 KYFQSNA--EPRCPHCNDYW  227 (238)
T ss_dssp             HHTTTCS--SCBCTTTCCBC
T ss_pred             HHHHhCC--CCCCCCCCCCC
Confidence            9997522  56899998654


No 73 
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.72  E-value=0.0052  Score=47.81  Aligned_cols=35  Identities=23%  Similarity=0.510  Sum_probs=28.3

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHH
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENI  190 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~W  190 (312)
                      ++..|.||.+.+...++..-+.|+|.||..|+..+
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            46789999986543666656899999999999984


No 74 
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=92.45  E-value=0.063  Score=39.49  Aligned_cols=50  Identities=20%  Similarity=0.345  Sum_probs=35.8

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE  208 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~  208 (312)
                      ....|.||.+.   +..+.--.|...||..|+...+.......-.||.|....
T Consensus        11 ~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           11 PGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            45679999854   444422258999999999988766544567899997543


No 75 
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=90.29  E-value=0.2  Score=53.84  Aligned_cols=63  Identities=11%  Similarity=0.055  Sum_probs=48.8

Q ss_pred             CCCcccccccccccccceeEEeccC-CcchHHHHHHHHHhcCCCCCCCCCCCCCCccchHhHHHHHHHHHH
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCG-HLYHADCLENITAEINKYDPACPVCTLGEKKTHKLSERALKSEME  224 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCG-H~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~~~~kl~~~~l~~el~  224 (312)
                      .+...|||-++.+. +||+  +|.| +.|-+.+|++|+..    +.+||+=|.++......-+.+++..++
T Consensus       889 P~~F~cPIs~~lM~-DPVi--lpsG~~TydR~~I~~wl~~----~~tdP~Tr~~L~~~~liPN~~Lk~~I~  952 (968)
T 3m62_A          889 PDEFLDPLMYTIMK-DPVI--LPASKMNIDRSTIKAHLLS----DSTDPFNRMPLKLEDVTPNEELRQKIL  952 (968)
T ss_dssp             CGGGBCTTTCSBCS-SEEE--CTTTCCEEEHHHHHHHHTT----CCBCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred             cHHhCCcchhhHHh-CCeE--cCCCCEEECHHHHHHHHhc----CCCCCCCCCCCCcccccccHHHHHHHH
Confidence            47889999999999 8988  9998 68999999999976    679999988776433222344444443


No 76 
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=89.64  E-value=0.073  Score=42.15  Aligned_cols=45  Identities=22%  Similarity=0.507  Sum_probs=34.6

Q ss_pred             CCcccccccccccccceeEEeccC-CcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCG-HLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCG-H~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .-..|-.|.-..+   .+  +.|. |..|..|+.-.|..    ...||+|.+.+-
T Consensus        27 G~~nCKsCWf~~k---~L--V~C~dHYLCl~CLtlmL~~----SdrCpIC~~pLP   72 (99)
T 2ko5_A           27 GPQFCKSCWFENK---GL--VECNNHYLCLNCLTLLLSV----SNRCPICKMPLP   72 (99)
T ss_dssp             CCCCCCSSCSCCS---SE--EECSSCEEEHHHHHHTCSS----SSEETTTTEECC
T ss_pred             CcccChhhccccC---Ce--eeecchhhHHHHHHHHHhh----ccCCcccCCcCC
Confidence            4567999985544   22  4575 99999999999876    778999987663


No 77 
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=86.29  E-value=0.25  Score=33.81  Aligned_cols=48  Identities=25%  Similarity=0.507  Sum_probs=31.2

Q ss_pred             ccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416          159 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL  206 (312)
Q Consensus       159 ~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~  206 (312)
                      .|.||.+.-..+..+.--.|...||..|+..=+.......-.||.|+.
T Consensus         2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            589998653323333222588999999997644433334667999964


No 78 
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=85.77  E-value=0.22  Score=36.84  Aligned_cols=51  Identities=22%  Similarity=0.436  Sum_probs=33.3

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL  206 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~  206 (312)
                      +...|.||.........+.-=.|.--||..|+..-..........||.|+.
T Consensus        17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~   67 (75)
T 2k16_A           17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN   67 (75)
T ss_dssp             EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHH
T ss_pred             CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccC
Confidence            456799998775422333222588899999997644322223678999963


No 79 
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=85.59  E-value=1.5  Score=36.88  Aligned_cols=50  Identities=12%  Similarity=0.241  Sum_probs=33.9

Q ss_pred             CCCCcccccccccccccceeEEeccCCcchHHHHHHHHH-----h--cCCCCCCCCCCCC
Q 021416          154 SVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITA-----E--INKYDPACPVCTL  206 (312)
Q Consensus       154 ~~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~-----~--~~~~~~~CPvCR~  206 (312)
                      ...+..|.||.+-   +..+--=.|--+||..||..-+.     .  .....-.||+|+.
T Consensus        60 Dg~~d~C~vC~~G---G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~  116 (142)
T 2lbm_A           60 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP  116 (142)
T ss_dssp             TSCBCSCSSSCCC---SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred             CCCCCeecccCCC---CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence            3466789999865   44332225889999999997542     1  1233778999974


No 80 
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=84.91  E-value=0.64  Score=36.09  Aligned_cols=47  Identities=21%  Similarity=0.599  Sum_probs=30.6

Q ss_pred             CCCcccccccccccccceeEEec---cCCcchHHHHHHH------------HHhcCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLT---CGHLYHADCLENI------------TAEINKYDPACPVCT  205 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~Lp---CGH~FH~~CI~~W------------l~~~~~~~~~CPvCR  205 (312)
                      ..+..|.||--. . ....  +|   |+-+||..|+.+.            +.......-+||.|.
T Consensus        13 ~~D~~C~VC~~~-t-~~~l--~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce   74 (89)
T 1wil_A           13 VNDEMCDVCEVW-T-AESL--FPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD   74 (89)
T ss_dssp             CCSCCCTTTCCC-C-SSCC--SSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred             CCCcccCccccc-c-ccce--eccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence            367789999633 3 2223  44   8999999999996            111111245899994


No 81 
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=84.49  E-value=0.32  Score=34.87  Aligned_cols=49  Identities=24%  Similarity=0.454  Sum_probs=34.1

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL  206 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~  206 (312)
                      .....|.||.+.   +..+.--.|.-.||..|+..-+.......-.||.|..
T Consensus         9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~   57 (61)
T 2l5u_A            9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK   57 (61)
T ss_dssp             CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred             CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence            366789999873   3443222588899999999855443334678999964


No 82 
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=84.23  E-value=0.55  Score=41.06  Aligned_cols=52  Identities=17%  Similarity=0.361  Sum_probs=33.7

Q ss_pred             cccccccccccccc----eeEEeccCCcchHHHHHHHHH---hc----CCCCCCCCCCCCCCc
Q 021416          158 QTCGVCSKLLSELC----VVAVLTCGHLYHADCLENITA---EI----NKYDPACPVCTLGEK  209 (312)
Q Consensus       158 ~~C~ICle~f~~~~----vv~~LpCGH~FH~~CI~~Wl~---~~----~~~~~~CPvCR~~~~  209 (312)
                      ..|+||...|.+++    .+.--.|..-||..|+.---.   ..    ......||.|+....
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~   65 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP   65 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred             CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence            46999999988554    333335889999999843110   00    001679999986543


No 83 
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=81.81  E-value=0.27  Score=38.99  Aligned_cols=51  Identities=27%  Similarity=0.552  Sum_probs=33.1

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT  205 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR  205 (312)
                      .++..|.||.+.=...+.+.=-.|+..||..|+...+.......-.||.|+
T Consensus         5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~   55 (111)
T 2ysm_A            5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK   55 (111)
T ss_dssp             CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred             CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence            477889999876331222322359999999999886543222356677775


No 84 
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=81.33  E-value=0.21  Score=43.06  Aligned_cols=48  Identities=17%  Similarity=0.392  Sum_probs=33.5

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL  206 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~  206 (312)
                      ++..|.||.+.   +..+.-=.|.-.||..|+..-+.......-.||.|+.
T Consensus         3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~   50 (184)
T 3o36_A            3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRD   50 (184)
T ss_dssp             SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred             CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccC
Confidence            56779999854   4433212488999999998766543334678999985


No 85 
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=79.87  E-value=2.2  Score=33.37  Aligned_cols=51  Identities=31%  Similarity=0.505  Sum_probs=36.8

Q ss_pred             CCccccccccccc---ccce-eEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          156 DMQTCGVCSKLLS---ELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       156 ~~~~C~ICle~f~---~~~v-v~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      ....|.||-+...   ++++ ++---|+--.|+.|.+--..+.   +..||.|+...+
T Consensus        15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG---~q~CpqCktrYk   69 (93)
T 1weo_A           15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG---TQNCPQCKTRYK   69 (93)
T ss_dssp             SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS---CSSCTTTCCCCC
T ss_pred             CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc---CccccccCCccc
Confidence            5679999998864   2222 3233588889999998866553   779999986663


No 86 
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=79.38  E-value=0.21  Score=35.88  Aligned_cols=50  Identities=32%  Similarity=0.533  Sum_probs=33.6

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG  207 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~  207 (312)
                      .....|.||.+.   +..+.--.|...||..|+..-+.......-.||.|...
T Consensus         7 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~   56 (61)
T 1mm2_A            7 HHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP   56 (61)
T ss_dssp             SSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred             CCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence            356789999863   33332224889999999986544433346689999754


No 87 
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.47  E-value=0.1  Score=36.77  Aligned_cols=48  Identities=33%  Similarity=0.575  Sum_probs=32.8

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT  205 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR  205 (312)
                      .+...|.||.+.   +..+.--.|...||..|+..-+.......-.||.|.
T Consensus         7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~   54 (56)
T 2yql_A            7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ   54 (56)
T ss_dssp             SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred             CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence            467789999874   344422358899999999865443333456798885


No 88 
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=78.17  E-value=0.3  Score=42.97  Aligned_cols=49  Identities=18%  Similarity=0.364  Sum_probs=33.6

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL  206 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~  206 (312)
                      .....|.||.+.   +..+.-=.|...||..|+.+-+.......-.||.|+.
T Consensus         5 ~~~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~   53 (207)
T 3u5n_A            5 PNEDWCAVCQNG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRD   53 (207)
T ss_dssp             SSCSSBTTTCCC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSC
T ss_pred             CCCCCCCCCCCC---CceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeC
Confidence            356779999854   3333111488999999998766544444678999975


No 89 
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=77.70  E-value=1.4  Score=32.83  Aligned_cols=53  Identities=15%  Similarity=0.335  Sum_probs=34.2

Q ss_pred             CCCccccccccccc-ccceeEEeccCCcchHHHHHHHHHhc-CCCCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLS-ELCVVAVLTCGHLYHADCLENITAEI-NKYDPACPVCTLGE  208 (312)
Q Consensus       155 ~~~~~C~ICle~f~-~~~vv~~LpCGH~FH~~CI~~Wl~~~-~~~~~~CPvCR~~~  208 (312)
                      .+...| ||...+. ....+.--.|..-||..|+.--.... ......||.|+...
T Consensus        10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~   64 (79)
T 1wep_A           10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence            355567 9998874 24444434588899999996432221 11378999998543


No 90 
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.70  E-value=0.18  Score=36.11  Aligned_cols=52  Identities=19%  Similarity=0.473  Sum_probs=34.7

Q ss_pred             CCCcccccccccccc-cceeEEeccCCcchHHHHHHHHHhc-CCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSE-LCVVAVLTCGHLYHADCLENITAEI-NKYDPACPVCTL  206 (312)
Q Consensus       155 ~~~~~C~ICle~f~~-~~vv~~LpCGH~FH~~CI~~Wl~~~-~~~~~~CPvCR~  206 (312)
                      .+...|+||...+.+ ...+.--.|..-||..|+.--.... ......||.|+.
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~   57 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN   57 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence            466789999988753 3344334588899999986532211 113688999964


No 91 
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.13  E-value=0.59  Score=36.49  Aligned_cols=49  Identities=16%  Similarity=0.444  Sum_probs=31.3

Q ss_pred             CCcccccccccccccceeEEec--cC-CcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVLT--CG-HLYHADCLENITAEINKYDPACPVCTLGE  208 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~Lp--CG-H~FH~~CI~~Wl~~~~~~~~~CPvCR~~~  208 (312)
                      +...| ||..... +..+.-=.  |. .-||..|+.  |.........||.|+...
T Consensus        35 e~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~   86 (91)
T 1weu_A           35 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES   86 (91)
T ss_dssp             CCBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred             CCcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence            44567 9998754 44432223  44 579999997  333333478899997654


No 92 
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=74.87  E-value=0.76  Score=34.05  Aligned_cols=49  Identities=16%  Similarity=0.444  Sum_probs=31.4

Q ss_pred             CCcccccccccccccceeEEec--cC-CcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVLT--CG-HLYHADCLENITAEINKYDPACPVCTLGE  208 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~Lp--CG-H~FH~~CI~~Wl~~~~~~~~~CPvCR~~~  208 (312)
                      +...| ||..... +..+.-=.  |. .-||..|+.  |.........||.|+...
T Consensus        15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~   66 (71)
T 1wen_A           15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES   66 (71)
T ss_dssp             SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred             CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence            45567 8988644 44332113  54 589999998  443333478899997654


No 93 
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=74.23  E-value=0.22  Score=35.38  Aligned_cols=48  Identities=33%  Similarity=0.619  Sum_probs=32.8

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT  205 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR  205 (312)
                      .++..|.||.+.   +..+.--.|.-.||..|+..-+.......-.||.|.
T Consensus         3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~   50 (60)
T 2puy_A            3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ   50 (60)
T ss_dssp             CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHH
T ss_pred             CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhcc
Confidence            356789999874   444422358899999999865443333466799994


No 94 
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=73.85  E-value=0.87  Score=35.61  Aligned_cols=50  Identities=20%  Similarity=0.422  Sum_probs=32.7

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLG  207 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~  207 (312)
                      +...| ||......+..+.--.|.-.||..|+..-+.... ....||.|+..
T Consensus        27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~~   76 (98)
T 2lv9_A           27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIP-DTYLCERCQPR   76 (98)
T ss_dssp             CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCC-SSBCCTTTSSS
T ss_pred             CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCC-CCEECCCCcCC
Confidence            45567 8987665454443335889999999976332211 25789999743


No 95 
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=73.64  E-value=5.3  Score=30.77  Aligned_cols=38  Identities=13%  Similarity=0.265  Sum_probs=28.4

Q ss_pred             CCCcccccccccccccceeEEec--cCCcchHHHHHHHHHh
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLT--CGHLYHADCLENITAE  193 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~Lp--CGH~FH~~CI~~Wl~~  193 (312)
                      .....|.+|.+.|++ .....-|  =+|.||.-|-...++.
T Consensus        13 ~a~l~CtlC~erLEd-tHFVQCPsv~~HkFCFpCsr~sIk~   52 (93)
T 2cs3_A           13 SGPLCCTICHERLED-THFVQCPSVPSHKFCFPCSRESIKA   52 (93)
T ss_dssp             CCSCCCSSSCSCCSS-TTSEECSSCSSCEECHHHHHHHHHH
T ss_pred             CCeeEeecchhhhcc-CceeeCCCccCCeeeccccHHHHHh
Confidence            467899999999984 3331222  3899999999998864


No 96 
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=72.20  E-value=0.28  Score=35.62  Aligned_cols=49  Identities=22%  Similarity=0.415  Sum_probs=33.3

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL  206 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~  206 (312)
                      .+...|.||.+.   +..+.--.|.-.||..|+..-+.......-.||.|..
T Consensus         6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~   54 (66)
T 1xwh_A            6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ   54 (66)
T ss_dssp             SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred             CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence            467789999864   3433222588899999998644433334667999963


No 97 
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=71.23  E-value=0.61  Score=36.24  Aligned_cols=49  Identities=22%  Similarity=0.481  Sum_probs=33.6

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL  206 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~  206 (312)
                      .....|.||.+.   +..+.--.|.-.||..|+.+=+.......-.||.|..
T Consensus        23 ~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~   71 (88)
T 1fp0_A           23 DSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV   71 (88)
T ss_dssp             SSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCC
T ss_pred             CCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccC
Confidence            356789999864   3333212477889999998765543334678999974


No 98 
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=69.69  E-value=3.8  Score=32.43  Aligned_cols=50  Identities=20%  Similarity=0.484  Sum_probs=29.8

Q ss_pred             CCcccccccccc------cccceeEEeccCCcchHHHHHH---HHHhcCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLL------SELCVVAVLTCGHLYHADCLEN---ITAEINKYDPACPVCT  205 (312)
Q Consensus       156 ~~~~C~ICle~f------~~~~vv~~LpCGH~FH~~CI~~---Wl~~~~~~~~~CPvCR  205 (312)
                      ....|.+|+..=      ..++.+.--.|+..||..||..   .........-.||.|+
T Consensus         4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   62 (112)
T 3v43_A            4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK   62 (112)
T ss_dssp             CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred             cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence            345799998642      1123333335999999999952   2211122366788886


No 99 
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=69.47  E-value=0.43  Score=34.26  Aligned_cols=53  Identities=25%  Similarity=0.434  Sum_probs=34.0

Q ss_pred             CCCcccccccccccc--cceeEEeccCCcchHHHHHHHHHh--c-CCCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSE--LCVVAVLTCGHLYHADCLENITAE--I-NKYDPACPVCTLG  207 (312)
Q Consensus       155 ~~~~~C~ICle~f~~--~~vv~~LpCGH~FH~~CI~~Wl~~--~-~~~~~~CPvCR~~  207 (312)
                      .+...|.||......  +..+.--.|.-.||..|+..-+..  . ....-.||.|...
T Consensus         4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~   61 (66)
T 2yt5_A            4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA   61 (66)
T ss_dssp             CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence            467789999976432  233321248999999999864321  1 2236789999643


No 100
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.44  E-value=0.32  Score=37.76  Aligned_cols=51  Identities=29%  Similarity=0.447  Sum_probs=33.3

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT  205 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR  205 (312)
                      .+...|.||...-.....+.-=.|...||..|+..=+.......-.||.|.
T Consensus        14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~   64 (92)
T 2e6r_A           14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCI   64 (92)
T ss_dssp             CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHH
T ss_pred             cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCc
Confidence            466789999876432233321248899999999864433333466799994


No 101
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=67.21  E-value=0.65  Score=40.45  Aligned_cols=47  Identities=23%  Similarity=0.518  Sum_probs=31.6

Q ss_pred             CcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416          157 MQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL  206 (312)
Q Consensus       157 ~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~  206 (312)
                      ...|.||.+.   +..+.--.|.-.||..|+..=+.......-.||.|+.
T Consensus         2 ~~~C~~C~~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~   48 (189)
T 2ro1_A            2 ATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHV   48 (189)
T ss_dssp             CCCBTTTCCC---SSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSC
T ss_pred             CCcCccCCCC---CceeECCCCCchhccccCCCCcccCCCCCCCCcCccC
Confidence            3569999854   3433223488899999998654433334668999974


No 102
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=65.83  E-value=7.7  Score=32.01  Aligned_cols=49  Identities=14%  Similarity=0.318  Sum_probs=32.3

Q ss_pred             CCCCcccccccccccccceeEEeccCCcchHHHHHHH-----HHhc--CCCCCCCCCCC
Q 021416          154 SVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENI-----TAEI--NKYDPACPVCT  205 (312)
Q Consensus       154 ~~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~W-----l~~~--~~~~~~CPvCR  205 (312)
                      +..+..|.||.+-   ++.+--=.|-..||..||..-     +.+.  ....-.|++|+
T Consensus        54 Dg~~~~C~vC~dG---G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~  109 (129)
T 3ql9_A           54 DGMDEQCRWCAEG---GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICH  109 (129)
T ss_dssp             TSCBSSCTTTCCC---SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTC
T ss_pred             CCCCCcCeecCCC---CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcC
Confidence            3456679999864   333311148899999999975     3222  23467899996


No 103
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=64.21  E-value=0.91  Score=36.16  Aligned_cols=51  Identities=18%  Similarity=0.386  Sum_probs=32.6

Q ss_pred             CCccccccccccccccee-EEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVV-AVLTCGHLYHADCLENITAEINKYDPACPVCTL  206 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv-~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~  206 (312)
                      +-..|.||.+.-.+...+ .--.|...||..|+..-+.......-.||.|+.
T Consensus        60 ~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~  111 (112)
T 3v43_A           60 ECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP  111 (112)
T ss_dssp             TTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred             cCCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence            334688998642212223 112488999999998755544444678999974


No 104
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=63.93  E-value=2.8  Score=31.24  Aligned_cols=42  Identities=12%  Similarity=-0.022  Sum_probs=34.8

Q ss_pred             CCccccccccCcc-ccCCCCCccccCCCCCCCCcccccc-cccCCCCC
Q 021416          244 SNSVVLDRHKGSW-NEGKGPKMASSSSLKSSSGKPFLKR-HFSFGSKG  289 (312)
Q Consensus       244 ~~~~~~~~~~~~~-~~G~~~kl~~sss~~~s~~k~~l~~-Hf~~~~~~  289 (312)
                      ...+.|+.|.+.. ..+.+.++.|    ..|||..+|+. |..++..-
T Consensus        28 ~~~v~C~~C~~~~~~~A~ksCl~C----~~s~C~~hl~~~H~~~~~~~   71 (78)
T 2ffw_A           28 AEKVLCQFCDQDPAQDAVKTCVTC----EVSYCDECLKATHPNKKPFT   71 (78)
T ss_dssp             SCCCBCSSCCSSSCCBCCEEETTT----TEEECHHHHHHHSCCCSSSC
T ss_pred             CCCccCCcCCCCCCCCCeeEccCc----cchhhhhhhHhhcCCCCCCC
Confidence            4568889998766 7889999999    89999999998 98776443


No 105
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.20  E-value=1.2  Score=33.40  Aligned_cols=48  Identities=23%  Similarity=0.442  Sum_probs=30.7

Q ss_pred             ccccccccccccceeEEeccCCcchHHHHHHHHHhcCCC-CCCCCCCCC
Q 021416          159 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKY-DPACPVCTL  206 (312)
Q Consensus       159 ~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~-~~~CPvCR~  206 (312)
                      .|.||...-..+..+.-=.|...||..|+..=|...... .-.||.|..
T Consensus        28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~   76 (77)
T 2e6s_A           28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT   76 (77)
T ss_dssp             SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred             CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence            788998542223333112488999999998655443333 568999963


No 106
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=58.53  E-value=1.4  Score=32.40  Aligned_cols=48  Identities=19%  Similarity=0.418  Sum_probs=29.6

Q ss_pred             ccccccccccccceeEEeccCCcchHHHHHHHHHhcCCC-CCCCCCCCC
Q 021416          159 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKY-DPACPVCTL  206 (312)
Q Consensus       159 ~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~-~~~CPvCR~  206 (312)
                      .|.||...-..+..+.-=.|...||..|+..=+...... .-.||.|+.
T Consensus        20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~   68 (70)
T 3asl_A           20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN   68 (70)
T ss_dssp             SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred             CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence            567887542222222111488999999998655443333 668999974


No 107
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=57.75  E-value=0.91  Score=34.84  Aligned_cols=50  Identities=26%  Similarity=0.482  Sum_probs=31.9

Q ss_pred             CCcccccccccccc--cceeEEeccCCcchHHHHHHHHHh----cCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSE--LCVVAVLTCGHLYHADCLENITAE----INKYDPACPVCT  205 (312)
Q Consensus       156 ~~~~C~ICle~f~~--~~vv~~LpCGH~FH~~CI~~Wl~~----~~~~~~~CPvCR  205 (312)
                      +...|.||...-..  +..+.-=.|...||..|+..-+..    .....-.|+.|.
T Consensus        15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~   70 (88)
T 1wev_A           15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCT   70 (88)
T ss_dssp             HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHH
T ss_pred             CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCcccc
Confidence            34579999876331  222211148999999999875432    233467899995


No 108
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=57.71  E-value=0.85  Score=32.52  Aligned_cols=47  Identities=19%  Similarity=0.471  Sum_probs=29.6

Q ss_pred             CCcccccccccccccceeEEec--cC-CcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVLT--CG-HLYHADCLENITAEINKYDPACPVCTL  206 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~Lp--CG-H~FH~~CI~~Wl~~~~~~~~~CPvCR~  206 (312)
                      +...| ||.+... +..+.-=.  |. .-||..|+.  +.........||.|+.
T Consensus         8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~   57 (59)
T 3c6w_A            8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ   57 (59)
T ss_dssp             CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred             CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence            44556 9998654 44332223  55 689999998  4333334678999953


No 109
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=57.62  E-value=1.1  Score=33.67  Aligned_cols=48  Identities=21%  Similarity=0.432  Sum_probs=29.0

Q ss_pred             ccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCC-CCCCCCCC
Q 021416          159 TCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYD-PACPVCTL  206 (312)
Q Consensus       159 ~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~-~~CPvCR~  206 (312)
                      .|.||...-..+..+.-=.|...||..|+..-|....... -.||.|+.
T Consensus        28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~   76 (77)
T 3shb_A           28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN   76 (77)
T ss_dssp             SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred             cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence            5777765432222221114889999999997655433334 68999974


No 110
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=55.82  E-value=5.2  Score=30.00  Aligned_cols=36  Identities=25%  Similarity=0.493  Sum_probs=24.8

Q ss_pred             CCCCcccccccccccccceeEE-eccCCcchHHHHHH
Q 021416          154 SVDMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLEN  189 (312)
Q Consensus       154 ~~~~~~C~ICle~f~~~~vv~~-LpCGH~FH~~CI~~  189 (312)
                      +.+...|.+|...|.....-.. -.||.+||..|...
T Consensus        16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~   52 (82)
T 2yw8_A           16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN   52 (82)
T ss_dssp             CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred             CccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence            3466789999999872221111 35999999999764


No 111
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=55.81  E-value=10  Score=36.55  Aligned_cols=48  Identities=19%  Similarity=0.376  Sum_probs=32.0

Q ss_pred             cccccccccccccceeEEeccCCc--chHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          158 QTCGVCSKLLSELCVVAVLTCGHL--YHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       158 ~~C~ICle~f~~~~vv~~LpCGH~--FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      ..|||-...+. .| ++...|.|.  |-.+=+-+....  .....||+|.+.+.
T Consensus       250 L~CPlS~~ri~-~P-vRg~~C~HlQCFDl~sfL~~~~~--~~~W~CPIC~k~~~  299 (371)
T 3i2d_A          250 LQCPISYTRMK-YP-SKSINCKHLQCFDALWFLHSQLQ--IPTWQCPVCQIDIA  299 (371)
T ss_dssp             SBCTTTSSBCS-SE-EEETTCCSSCCEEHHHHHHHHHH--SCCCBCTTTCCBCC
T ss_pred             ecCCCcccccc-cc-CcCCcCCCcceECHHHHHHHhhc--CCceeCCCCCcccC
Confidence            57999888877 44 445679998  544444444333  23678999987664


No 112
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=54.77  E-value=0.95  Score=32.28  Aligned_cols=46  Identities=17%  Similarity=0.489  Sum_probs=28.4

Q ss_pred             CCcccccccccccccceeEEec--cC-CcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVLT--CG-HLYHADCLENITAEINKYDPACPVCT  205 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~Lp--CG-H~FH~~CI~~Wl~~~~~~~~~CPvCR  205 (312)
                      +...| ||..... +..+.-=.  |. ..||..|+.  +.........||.|+
T Consensus         9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~   57 (60)
T 2vnf_A            9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCS   57 (60)
T ss_dssp             CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHH
T ss_pred             CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCcc
Confidence            44556 9987643 43332113  44 579999998  444333467899995


No 113
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=53.79  E-value=1.2  Score=32.14  Aligned_cols=47  Identities=19%  Similarity=0.430  Sum_probs=29.2

Q ss_pred             CCcccccccccccccceeEEec--cC-CcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVLT--CG-HLYHADCLENITAEINKYDPACPVCTL  206 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~Lp--CG-H~FH~~CI~~Wl~~~~~~~~~CPvCR~  206 (312)
                      +...| ||..... +..+.-=.  |. .-||..|+.  +.........||.|+.
T Consensus        10 e~~yC-~C~~~~~-g~MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~   59 (62)
T 2g6q_A           10 EPTYC-LCNQVSY-GEMIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG   59 (62)
T ss_dssp             CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred             CCcEE-ECCCCCC-CCeeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence            34556 9998643 43332223  44 789999998  3333334678999964


No 114
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=52.46  E-value=0.95  Score=33.22  Aligned_cols=49  Identities=20%  Similarity=0.299  Sum_probs=31.5

Q ss_pred             CCccccccccccccc-ceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSEL-CVVAVLTCGHLYHADCLENITAEINKYDPACPVCT  205 (312)
Q Consensus       156 ~~~~C~ICle~f~~~-~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR  205 (312)
                      +...| ||.....++ ..+.--.|..-||..|+.--..........||.|+
T Consensus        15 ~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~   64 (72)
T 1wee_A           15 WKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCI   64 (72)
T ss_dssp             SEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHH
T ss_pred             cceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCcc
Confidence            45678 798876533 34433458888999998653211122367899996


No 115
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=52.13  E-value=2.3  Score=35.85  Aligned_cols=50  Identities=22%  Similarity=0.495  Sum_probs=32.1

Q ss_pred             CCcccccccccccc-cceeEEeccCCcchHHHHHHHHHh-cCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSE-LCVVAVLTCGHLYHADCLENITAE-INKYDPACPVCTL  206 (312)
Q Consensus       156 ~~~~C~ICle~f~~-~~vv~~LpCGH~FH~~CI~~Wl~~-~~~~~~~CPvCR~  206 (312)
                      +...| ||.....+ +..+.--.|.-.||..|+.--... .......||.|+.
T Consensus         7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~   58 (174)
T 2ri7_A            7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS   58 (174)
T ss_dssp             CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred             CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence            55678 99987642 234433358889999999642221 1123788999974


No 116
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=51.90  E-value=1  Score=35.53  Aligned_cols=49  Identities=20%  Similarity=0.484  Sum_probs=30.9

Q ss_pred             cccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416          158 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL  206 (312)
Q Consensus       158 ~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~  206 (312)
                      ..|.||.+.-.+...+.--.|...||..|++.-+.......-.||.|..
T Consensus        55 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~  103 (111)
T 2ysm_A           55 KVCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI  103 (111)
T ss_dssp             CCCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred             CcccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence            3577887653322333223589999999998755433334667998853


No 117
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=50.94  E-value=1.2  Score=32.57  Aligned_cols=50  Identities=18%  Similarity=0.338  Sum_probs=33.1

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL  206 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~  206 (312)
                      .+...| ||...+.....+.--.|..-||..|+.--... ......||.|+.
T Consensus        17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~-~~~~~~C~~C~~   66 (68)
T 3o70_A           17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSN-VPEVFVCQKCRD   66 (68)
T ss_dssp             TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTS-CCSSCCCHHHHT
T ss_pred             CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCccc-CCCcEECCCCCC
Confidence            366678 99987663345544458999999998653211 123678999963


No 118
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=49.46  E-value=7.9  Score=29.10  Aligned_cols=36  Identities=19%  Similarity=0.452  Sum_probs=25.0

Q ss_pred             CCCCcccccccccccccceeEE-eccCCcchHHHHHH
Q 021416          154 SVDMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLEN  189 (312)
Q Consensus       154 ~~~~~~C~ICle~f~~~~vv~~-LpCGH~FH~~CI~~  189 (312)
                      +.+...|.+|...|.....--. -.||++||..|...
T Consensus        18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~   54 (84)
T 1z2q_A           18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH   54 (84)
T ss_dssp             TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred             CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence            3466789999999873221111 35999999999755


No 119
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=49.44  E-value=16  Score=35.17  Aligned_cols=49  Identities=22%  Similarity=0.406  Sum_probs=33.2

Q ss_pred             CcccccccccccccceeEEeccCCc--chHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          157 MQTCGVCSKLLSELCVVAVLTCGHL--YHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       157 ~~~C~ICle~f~~~~vv~~LpCGH~--FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      ...|||-...+. .| ++...|.|.  |-..=+-+.....  ....||+|.+...
T Consensus       215 SL~CPlS~~ri~-~P-~Rg~~C~HlqCFDl~sfL~~~~~~--~~W~CPiC~k~~~  265 (360)
T 4fo9_A          215 SLMCPLGKMRLT-IP-CRAVTCTHLQCFDAALYLQMNEKK--PTWICPVCDKKAA  265 (360)
T ss_dssp             ESBCTTTCSBCS-SE-EEETTCCCCCCEEHHHHHHHHHHS--CCCBCTTTCSBCC
T ss_pred             eeeCCCccceec-cC-CcCCCCCCCccCCHHHHHHHHhhC--CCeECCCCCcccC
Confidence            357999888877 44 444679999  5555444444332  3678999997664


No 120
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=49.40  E-value=1.8  Score=29.73  Aligned_cols=47  Identities=17%  Similarity=0.345  Sum_probs=28.9

Q ss_pred             ccccccccccccc-eeEEe-ccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416          159 TCGVCSKLLSELC-VVAVL-TCGHLYHADCLENITAEINKYDPACPVCT  205 (312)
Q Consensus       159 ~C~ICle~f~~~~-vv~~L-pCGH~FH~~CI~~Wl~~~~~~~~~CPvCR  205 (312)
                      .|.||...+.++. .+.-- .|.--||..|+.--..........||.|+
T Consensus         4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~   52 (52)
T 2kgg_A            4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA   52 (52)
T ss_dssp             SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred             cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence            4889988876332 33323 57778999998643221111378899995


No 121
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.98  E-value=9  Score=28.71  Aligned_cols=37  Identities=22%  Similarity=0.430  Sum_probs=24.7

Q ss_pred             CCCCCcccccccccccccceeEE-eccCCcchHHHHHH
Q 021416          153 SSVDMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLEN  189 (312)
Q Consensus       153 ~~~~~~~C~ICle~f~~~~vv~~-LpCGH~FH~~CI~~  189 (312)
                      ++.+...|.+|...|.....--. -.||.+||..|...
T Consensus        10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~   47 (84)
T 1x4u_A           10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF   47 (84)
T ss_dssp             SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred             cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence            33456789999999872211111 35999999999644


No 122
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=48.01  E-value=2.8  Score=32.15  Aligned_cols=50  Identities=18%  Similarity=0.316  Sum_probs=31.5

Q ss_pred             CCCcccccccccccc-c-ceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSE-L-CVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL  206 (312)
Q Consensus       155 ~~~~~C~ICle~f~~-~-~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~  206 (312)
                      .+...|.||.+.-.. . ..+.--.|.-.||..|+..-+  .....-.||.|..
T Consensus        23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~   74 (88)
T 2l43_A           23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQ   74 (88)
T ss_dssp             CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHH
T ss_pred             CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccC
Confidence            366789999976421 1 222111488899999998632  1223678999963


No 123
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=47.41  E-value=6.8  Score=31.79  Aligned_cols=34  Identities=26%  Similarity=0.584  Sum_probs=23.7

Q ss_pred             CCcccccccccccccceeEE-eccCCcchHHHHHH
Q 021416          156 DMQTCGVCSKLLSELCVVAV-LTCGHLYHADCLEN  189 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~-LpCGH~FH~~CI~~  189 (312)
                      +...|.+|...|....--.. -.||++||..|...
T Consensus        68 ~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~  102 (125)
T 1joc_A           68 EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK  102 (125)
T ss_dssp             GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred             CCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence            55689999999872211111 25999999999654


No 124
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=47.38  E-value=1.4  Score=35.93  Aligned_cols=49  Identities=14%  Similarity=0.404  Sum_probs=28.6

Q ss_pred             CCCCCcccccccccccccce-eEEeccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416          153 SSVDMQTCGVCSKLLSELCV-VAVLTCGHLYHADCLENITAEINKYDPACPVCT  205 (312)
Q Consensus       153 ~~~~~~~C~ICle~f~~~~v-v~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR  205 (312)
                      |..+...|.+|...|..... ..--.||.+||..|.......    ...|-.|-
T Consensus        15 Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~----vRVC~~C~   64 (120)
T 1y02_A           15 PTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG----PRLCLLCQ   64 (120)
T ss_dssp             -----CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--------CCEEHHHH
T ss_pred             CccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC----ceECHHHH
Confidence            34456789999998873221 111359999999997765543    55677773


No 125
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=47.18  E-value=4.6  Score=32.21  Aligned_cols=47  Identities=21%  Similarity=0.284  Sum_probs=30.3

Q ss_pred             CCCcccccccccccccceeEEe--ccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSELCVVAVL--TCGHLYHADCLENITAEINKYDPACPVCTL  206 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~L--pCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~  206 (312)
                      .++..|.||.+.   ++.+.-=  .|-..||..|+.  |.......-.||.|.-
T Consensus        13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C   61 (107)
T 4gne_A           13 MHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQC   61 (107)
T ss_dssp             SSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBC
T ss_pred             CCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCC
Confidence            467789999843   3333211  366899999997  4443334567997753


No 126
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=45.73  E-value=7.7  Score=29.60  Aligned_cols=36  Identities=14%  Similarity=0.331  Sum_probs=25.0

Q ss_pred             CCcccccccccccccce-eEEeccCCcchHHHHHHHH
Q 021416          156 DMQTCGVCSKLLSELCV-VAVLTCGHLYHADCLENIT  191 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~v-v~~LpCGH~FH~~CI~~Wl  191 (312)
                      +...|.+|...|..... ..--.||++||..|.....
T Consensus        19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~   55 (90)
T 3t7l_A           19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC   55 (90)
T ss_dssp             GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred             cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence            45679999998873221 1113599999999976643


No 127
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=43.78  E-value=12  Score=28.60  Aligned_cols=35  Identities=17%  Similarity=0.296  Sum_probs=24.4

Q ss_pred             CCCcccccccccccccceeE-EeccCCcchHHHHHH
Q 021416          155 VDMQTCGVCSKLLSELCVVA-VLTCGHLYHADCLEN  189 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~-~LpCGH~FH~~CI~~  189 (312)
                      .+...|.+|...|.....-- --.||.+||..|...
T Consensus         7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~   42 (88)
T 1wfk_A            7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF   42 (88)
T ss_dssp             CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred             CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence            35668999999987322111 135999999999755


No 128
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=43.76  E-value=2.6  Score=38.08  Aligned_cols=49  Identities=18%  Similarity=0.394  Sum_probs=27.9

Q ss_pred             cccccccccccccceeEEeccCCcchHHHHHHHHHhcCCC-CCCCCCCCC
Q 021416          158 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKY-DPACPVCTL  206 (312)
Q Consensus       158 ~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~-~~~CPvCR~  206 (312)
                      ..|.||...=..+..+.-=.|...||..|+.+=+...... .-.||.|..
T Consensus       175 c~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~  224 (226)
T 3ask_A          175 CACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN  224 (226)
T ss_dssp             TSCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred             CCCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence            3688997642212222111488999999999755443333 567999964


No 129
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=41.70  E-value=12  Score=27.32  Aligned_cols=33  Identities=27%  Similarity=0.484  Sum_probs=22.6

Q ss_pred             CcccccccccccccceeEE-eccCCcchHHHHHH
Q 021416          157 MQTCGVCSKLLSELCVVAV-LTCGHLYHADCLEN  189 (312)
Q Consensus       157 ~~~C~ICle~f~~~~vv~~-LpCGH~FH~~CI~~  189 (312)
                      ...|.+|...|.....-.. -.||.+||..|...
T Consensus        11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~   44 (73)
T 1vfy_A           11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN   44 (73)
T ss_dssp             CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred             CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence            3579999998872211111 25999999999754


No 130
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=41.42  E-value=2.3  Score=29.21  Aligned_cols=49  Identities=20%  Similarity=0.386  Sum_probs=30.4

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTL  206 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~  206 (312)
                      +...| ||.........+.--.|.--||..|+.--... ......||.|+.
T Consensus         3 d~~~C-~C~~~~~~~~MI~Cd~C~~W~H~~Cvgi~~~~-~~~~~~C~~C~~   51 (52)
T 3o7a_A            3 DLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSN-VPEVFVCQKCRD   51 (52)
T ss_dssp             TCBCS-TTCCBCTTCCEEECTTTCCEEETTTTTCCGGG-CCSSCCCHHHHT
T ss_pred             cCeEE-EeCCcCCCCCEEEcCCCCccccccccCCCccc-CCCcEECcCCCC
Confidence            34445 78876553345543458889999998643221 123778998863


No 131
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=41.37  E-value=5.8  Score=25.45  Aligned_cols=14  Identities=29%  Similarity=0.453  Sum_probs=11.7

Q ss_pred             CCCccccccccccc
Q 021416          155 VDMQTCGVCSKLLS  168 (312)
Q Consensus       155 ~~~~~C~ICle~f~  168 (312)
                      .+...||||+..|.
T Consensus         3 ~EGFiCP~C~~~l~   16 (34)
T 3mjh_B            3 SEGFICPQCMKSLG   16 (34)
T ss_dssp             SEEEECTTTCCEES
T ss_pred             CcccCCcHHHHHcC
Confidence            35689999999887


No 132
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=40.31  E-value=20  Score=26.05  Aligned_cols=50  Identities=26%  Similarity=0.603  Sum_probs=32.1

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHh-----cCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAE-----INKYDPACPVCTL  206 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~-----~~~~~~~CPvCR~  206 (312)
                      +...| ||...+.....+.--.|..-||..|+.--...     .......||.|+.
T Consensus        15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~   69 (76)
T 1wem_A           15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI   69 (76)
T ss_dssp             TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred             CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcC
Confidence            44567 99988764445544468899999998532111     0113789999963


No 133
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=40.05  E-value=3.1  Score=32.25  Aligned_cols=46  Identities=20%  Similarity=0.338  Sum_probs=28.3

Q ss_pred             CCcccccccccccccceeEEeccC---CcchHHHHHHHHHhcCCCCCCCCC-CC
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCG---HLYHADCLENITAEINKYDPACPV-CT  205 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCG---H~FH~~CI~~Wl~~~~~~~~~CPv-CR  205 (312)
                      +...| ||..... +..+.-=.|.   --||..|+.  |.........||. |+
T Consensus        25 ~~~yC-iC~~~~~-g~MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~   74 (90)
T 2jmi_A           25 EEVYC-FCRNVSY-GPMVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK   74 (90)
T ss_dssp             CSCCS-TTTCCCS-SSEECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred             CCcEE-EeCCCCC-CCEEEecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence            45567 9997644 4433222344   679999996  3332234678999 84


No 134
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=39.91  E-value=3.4  Score=32.92  Aligned_cols=48  Identities=23%  Similarity=0.463  Sum_probs=27.9

Q ss_pred             cccccccccccc-------cceeEEeccCCcchHHHHHHHHH---hcCCCCCCCCCCC
Q 021416          158 QTCGVCSKLLSE-------LCVVAVLTCGHLYHADCLENITA---EINKYDPACPVCT  205 (312)
Q Consensus       158 ~~C~ICle~f~~-------~~vv~~LpCGH~FH~~CI~~Wl~---~~~~~~~~CPvCR  205 (312)
                      ..|.||+..-..       ++.+.--.|+..||..||.....   ......-.||.|+
T Consensus         2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~   59 (114)
T 2kwj_A            2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK   59 (114)
T ss_dssp             CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred             CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence            469999865311       12232235999999999975421   1111255677764


No 135
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=39.90  E-value=1.8  Score=34.60  Aligned_cols=48  Identities=23%  Similarity=0.424  Sum_probs=31.0

Q ss_pred             cccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416          158 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT  205 (312)
Q Consensus       158 ~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR  205 (312)
                      ..|.||...-..+..+.--.|...||..|+..=+.......-.||.|.
T Consensus        59 ~~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~  106 (114)
T 2kwj_A           59 KSCILCGTSENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCW  106 (114)
T ss_dssp             CCCTTTTCCTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHH
T ss_pred             CccCcccccCCCCceEEcCCCCccccccccCCCccCCCCCCeECcccc
Confidence            368888875443333322258999999999864444333456799884


No 136
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=39.87  E-value=9.2  Score=23.44  Aligned_cols=28  Identities=21%  Similarity=0.543  Sum_probs=19.8

Q ss_pred             cccccccccccccceeEEeccCCcchHHHH
Q 021416          158 QTCGVCSKLLSELCVVAVLTCGHLYHADCL  187 (312)
Q Consensus       158 ~~C~ICle~f~~~~vv~~LpCGH~FH~~CI  187 (312)
                      ..|+.|.+..-..+.+  ..=|..||..|.
T Consensus         4 ~~C~~C~k~Vy~~Ek~--~~~g~~~Hk~CF   31 (31)
T 1zfo_A            4 PNCARCGKIVYPTEKV--NCLDKFWHKACF   31 (31)
T ss_dssp             CBCSSSCSBCCGGGCC--CSSSSCCCGGGC
T ss_pred             CcCCccCCEEecceeE--EECCeEecccCC
Confidence            4799998765434444  456899999883


No 137
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=39.27  E-value=27  Score=25.52  Aligned_cols=49  Identities=16%  Similarity=0.308  Sum_probs=31.4

Q ss_pred             CCCcccccccccc--cccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLL--SELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT  205 (312)
Q Consensus       155 ~~~~~C~ICle~f--~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR  205 (312)
                      .+...|.||.+.-  ..+..+.-=.|.-.||..|+..-.  .....-.||.|+
T Consensus        14 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~--vP~g~W~C~~C~   64 (71)
T 2ku3_A           14 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCL   64 (71)
T ss_dssp             CSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS--CCSSCCCCHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc--CCCCCcCCccCc
Confidence            4678899998663  212222111488999999997532  222366799885


No 138
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=38.26  E-value=6.7  Score=37.26  Aligned_cols=50  Identities=18%  Similarity=0.336  Sum_probs=0.0

Q ss_pred             CCcccccccccccccc-eeEEeccCCcchHHHHHHHHHhc---CCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELC-VVAVLTCGHLYHADCLENITAEI---NKYDPACPVCT  205 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~-vv~~LpCGH~FH~~CI~~Wl~~~---~~~~~~CPvCR  205 (312)
                      +...|.+|...|.... ...--.||++||..|....+...   .+....|-.|-
T Consensus       374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~  427 (434)
T 3mpx_A          374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCF  427 (434)
T ss_dssp             ------------------------------------------------------
T ss_pred             cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHH
Confidence            4568999999887221 11123599999999998765321   11245666663


No 139
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.04  E-value=11  Score=33.12  Aligned_cols=34  Identities=18%  Similarity=0.441  Sum_probs=23.4

Q ss_pred             CCcccccccccccccce-eEEeccCCcchHHHHHH
Q 021416          156 DMQTCGVCSKLLSELCV-VAVLTCGHLYHADCLEN  189 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~v-v~~LpCGH~FH~~CI~~  189 (312)
                      +...|.+|...|.-... ..--.||++||..|...
T Consensus       160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~  194 (220)
T 1dvp_A          160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK  194 (220)
T ss_dssp             CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred             CCCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence            45799999999872211 11125999999999654


No 140
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=36.70  E-value=10  Score=27.12  Aligned_cols=43  Identities=23%  Similarity=0.531  Sum_probs=28.0

Q ss_pred             cccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCC
Q 021416          158 QTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVC  204 (312)
Q Consensus       158 ~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvC  204 (312)
                      ..|-.|+..|.+....+--.|++.||.+|=. .+.+   .-..||-|
T Consensus        16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe---~Lh~CPgC   58 (59)
T 1z60_A           16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHD---SLHSCPGC   58 (59)
T ss_dssp             CEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTT---TSCSSSTT
T ss_pred             CcccccCcccCCCccEECCccCcCcccchhH-HHHh---hccCCcCC
Confidence            3599999988633323223599999999943 2222   14579988


No 141
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=36.62  E-value=12  Score=33.06  Aligned_cols=34  Identities=18%  Similarity=0.544  Sum_probs=23.7

Q ss_pred             CCcccccccccccccce-eEEeccCCcchHHHHHH
Q 021416          156 DMQTCGVCSKLLSELCV-VAVLTCGHLYHADCLEN  189 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~v-v~~LpCGH~FH~~CI~~  189 (312)
                      +...|.+|...|.-... ..--.||++||..|...
T Consensus       163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~  197 (226)
T 3zyq_A          163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK  197 (226)
T ss_dssp             CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred             cCCCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence            45689999998872211 11135999999999764


No 142
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=35.13  E-value=26  Score=25.16  Aligned_cols=35  Identities=17%  Similarity=0.502  Sum_probs=22.7

Q ss_pred             CCCcccccccccccccc-eeEEe-ccCCcchHHHHHH
Q 021416          155 VDMQTCGVCSKLLSELC-VVAVL-TCGHLYHADCLEN  189 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~-vv~~L-pCGH~FH~~CI~~  189 (312)
                      .....|++|...+.++. .+.-- .|.--||..|+.-
T Consensus         6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvgl   42 (65)
T 2vpb_A            6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGM   42 (65)
T ss_dssp             ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTC
T ss_pred             CCcCcCccCCCccCCCCCeEecccCccccCchhccCC
Confidence            35668999999876333 33223 5778899999853


No 143
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=29.71  E-value=15  Score=30.97  Aligned_cols=48  Identities=17%  Similarity=0.349  Sum_probs=31.5

Q ss_pred             CCCcccccccccccc--cceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSE--LCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT  205 (312)
Q Consensus       155 ~~~~~C~ICle~f~~--~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR  205 (312)
                      .++..|.+|+..|.-  +....-..|.|.+|..|-. |+..  ...-.|-+|.
T Consensus        66 ~~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~--~~~W~C~vC~  115 (153)
T 2zet_C           66 LNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPE--EQGWLCDPCH  115 (153)
T ss_dssp             GGGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSS--SSSCEEHHHH
T ss_pred             CCCccchhhcCccccccCCCCcCCCCCchhhccccc-ccCC--CCcEeeHHHH
Confidence            367899999998752  2222224699999999972 3322  2255688885


No 144
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=29.61  E-value=21  Score=28.34  Aligned_cols=13  Identities=31%  Similarity=0.509  Sum_probs=11.5

Q ss_pred             cchHHHHHHHHHh
Q 021416          181 LYHADCLENITAE  193 (312)
Q Consensus       181 ~FH~~CI~~Wl~~  193 (312)
                      -||+.||..|+..
T Consensus        42 GFCRNCLskWy~~   54 (105)
T 2o35_A           42 GFCRNCLSNWYRE   54 (105)
T ss_dssp             SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3999999999985


No 145
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=28.89  E-value=22  Score=28.18  Aligned_cols=13  Identities=23%  Similarity=0.450  Sum_probs=11.5

Q ss_pred             cchHHHHHHHHHh
Q 021416          181 LYHADCLENITAE  193 (312)
Q Consensus       181 ~FH~~CI~~Wl~~  193 (312)
                      -||+.||..|+..
T Consensus        41 GFCRNCLskWy~~   53 (104)
T 3fyb_A           41 DFCRNCLAKWLME   53 (104)
T ss_dssp             SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3999999999985


No 146
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=27.80  E-value=43  Score=32.42  Aligned_cols=48  Identities=15%  Similarity=0.391  Sum_probs=30.3

Q ss_pred             CCcccccccccccccceeEEe--ccCCcchHHHHHHHHH------hcCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVL--TCGHLYHADCLENITA------EINKYDPACPVCTL  206 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~L--pCGH~FH~~CI~~Wl~------~~~~~~~~CPvCR~  206 (312)
                      .+..|.||.+-   +.++.-=  .|...||..||...+.      ......-.|=+|.-
T Consensus        92 ~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p  147 (386)
T 2pv0_B           92 YQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLP  147 (386)
T ss_dssp             SBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSS
T ss_pred             CcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCC
Confidence            45567777653   3333222  5889999999999872      11112567988963


No 147
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=27.54  E-value=36  Score=24.97  Aligned_cols=51  Identities=20%  Similarity=0.329  Sum_probs=32.5

Q ss_pred             CCcccccccccccccceeEEe--ccCCcchHHHHHHHHHh-----cCCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVL--TCGHLYHADCLENITAE-----INKYDPACPVCTLG  207 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~L--pCGH~FH~~CI~~Wl~~-----~~~~~~~CPvCR~~  207 (312)
                      +...| ||......+..+.-=  .|..-||..|+.---..     .......||.|+..
T Consensus        15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~   72 (78)
T 1wew_A           15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT   72 (78)
T ss_dssp             CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred             CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence            45678 899875545555434  68899999998642111     01136789999643


No 148
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=26.97  E-value=17  Score=29.93  Aligned_cols=51  Identities=16%  Similarity=0.287  Sum_probs=29.4

Q ss_pred             CCCcccccccccccc--cceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSE--LCVVAVLTCGHLYHADCLENITAEINKYDPACPVCT  205 (312)
Q Consensus       155 ~~~~~C~ICle~f~~--~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR  205 (312)
                      .+...|.+|...|.-  +....-..|.|.+|..|-..-........-.|-+|+
T Consensus        53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~  105 (134)
T 1zbd_B           53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICL  105 (134)
T ss_dssp             CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHH
T ss_pred             CCCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhH
Confidence            467899999998841  222222458999999885431110111234566664


No 149
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.50  E-value=16  Score=26.72  Aligned_cols=46  Identities=24%  Similarity=0.433  Sum_probs=27.5

Q ss_pred             CCcccccccccccccceeEEeccC---CcchHHHHHHHHHhcCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCG---HLYHADCLENITAEINKYDPACPVCT  205 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCG---H~FH~~CI~~Wl~~~~~~~~~CPvCR  205 (312)
                      +...| ||..... +..+.--.|.   .-||..|+.-  .........||.|+
T Consensus         5 ~~~yC-~C~~~~~-g~MI~CD~cdC~~~WfH~~Cvgl--~~~p~~~w~Cp~C~   53 (70)
T 1x4i_A            5 SSGYC-ICNQVSY-GEMVGCDNQDCPIEWFHYGCVGL--TEAPKGKWYCPQCT   53 (70)
T ss_dssp             CCCCS-TTSCCCC-SSEECCSCTTCSCCCEEHHHHTC--SSCCSSCCCCHHHH
T ss_pred             CCeEE-EcCCCCC-CCEeEeCCCCCCccCCccccccc--CcCCCCCEECCCCC
Confidence            34455 6987643 4444322342   6899999973  32223467899995


No 150
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=26.19  E-value=40  Score=24.72  Aligned_cols=38  Identities=26%  Similarity=0.571  Sum_probs=27.9

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE  208 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~  208 (312)
                      ....|..|.+.+. +..+  ..-+..||.+|+            .|-.|...+
T Consensus        24 ~~~~C~~C~~~I~-~~~~--~a~~~~~H~~CF------------~C~~C~~~L   61 (89)
T 1x64_A           24 RMPLCDKCGSGIV-GAVV--KARDKYRHPECF------------VCADCNLNL   61 (89)
T ss_dssp             SCCBCTTTCCBCC-SCCE--ESSSCEECTTTC------------CCSSSCCCT
T ss_pred             cCCCcccCCCEec-ccEE--EECCceECccCC------------EecCCCCCC
Confidence            4568999998877 3433  457899998773            588887665


No 151
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=25.34  E-value=59  Score=25.33  Aligned_cols=41  Identities=20%  Similarity=0.589  Sum_probs=0.0

Q ss_pred             CCCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416          154 SVDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE  208 (312)
Q Consensus       154 ~~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~  208 (312)
                      +.....|.-|.+.+....++  ..-|..||.+|.            .|-.|...+
T Consensus         2 s~~~~~C~~C~~~I~~~~~~--~a~~~~wH~~CF------------~C~~C~~~L   42 (122)
T 1m3v_A            2 SLSWKRCAGCGGKIADRFLL--YAMDSYWHSRCL------------KCSSCQAQL   42 (122)
T ss_dssp             CSCCCCBSSSSSCCCSSCCE--EETTEEECHHHH------------CCSSSCCCT
T ss_pred             CCCCCCCcccCCEeCCcEEE--EECCceeHhhCC------------CcCCCCCcc


No 152
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=24.36  E-value=28  Score=25.62  Aligned_cols=32  Identities=25%  Similarity=0.636  Sum_probs=24.0

Q ss_pred             CCCcccccccccccccceeEEecc-CCcchHHHHHHH
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTC-GHLYHADCLENI  190 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpC-GH~FH~~CI~~W  190 (312)
                      .+..-|.||.+.-.    ++-+-| |-+||..|..+.
T Consensus         6 ee~pWC~ICneDAt----lrC~gCdgDLYC~rC~rE~   38 (67)
T 2d8v_A            6 SGLPWCCICNEDAT----LRCAGCDGDLYCARCFREG   38 (67)
T ss_dssp             CCCSSCTTTCSCCC----EEETTTTSEEECSSHHHHH
T ss_pred             cCCCeeEEeCCCCe----EEecCCCCceehHHHHHHH
Confidence            35667999987733    666778 889999997664


No 153
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=24.07  E-value=25  Score=27.54  Aligned_cols=50  Identities=18%  Similarity=0.395  Sum_probs=31.0

Q ss_pred             ccccccccccccccee-EEe-ccCCcchHHHHHHHHH------hcCCCCCCCCCCCCC
Q 021416          158 QTCGVCSKLLSELCVV-AVL-TCGHLYHADCLENITA------EINKYDPACPVCTLG  207 (312)
Q Consensus       158 ~~C~ICle~f~~~~vv-~~L-pCGH~FH~~CI~~Wl~------~~~~~~~~CPvCR~~  207 (312)
                      ..|+||...+.+.... .-= .|.--||..|+.--..      ........||.|+..
T Consensus         4 ~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~   61 (105)
T 2xb1_A            4 YPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKT   61 (105)
T ss_dssp             CBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHT
T ss_pred             CCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCc
Confidence            4699999988643322 111 4677899999853211      011136789999743


No 154
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=24.01  E-value=45  Score=28.41  Aligned_cols=48  Identities=17%  Similarity=0.382  Sum_probs=29.8

Q ss_pred             CCCcccccccccccccceeEEe--ccCCcchHHHHHHHHHh------cCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSELCVVAVL--TCGHLYHADCLENITAE------INKYDPACPVCT  205 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~L--pCGH~FH~~CI~~Wl~~------~~~~~~~CPvCR  205 (312)
                      -.+..|.||.+-   +.++.-=  .|...||.+||+..+..      .....-.|=+|.
T Consensus        77 G~~~yC~wC~~G---g~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~  132 (159)
T 3a1b_A           77 GYQSYCTICCGG---REVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG  132 (159)
T ss_dssp             SSBSSCTTTSCC---SEEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTC
T ss_pred             CCcceeeEecCC---CeEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecC
Confidence            355678888753   3332111  37789999999987642      112345688886


No 155
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.72  E-value=34  Score=27.25  Aligned_cols=24  Identities=21%  Similarity=0.541  Sum_probs=15.1

Q ss_pred             eccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416          176 LTCGHLYHADCLENITAEINKYDPACPVCTLGE  208 (312)
Q Consensus       176 LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~  208 (312)
                      ..||+.|.         ........||.|+...
T Consensus        71 ~~CG~~F~---------~~~~kPsrCP~CkSe~   94 (105)
T 2gmg_A           71 RKCGFVFK---------AEINIPSRCPKCKSEW   94 (105)
T ss_dssp             TTTCCBCC---------CCSSCCSSCSSSCCCC
T ss_pred             hhCcCeec---------ccCCCCCCCcCCCCCc
Confidence            45888881         1122256899998654


No 156
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.69  E-value=36  Score=24.35  Aligned_cols=39  Identities=18%  Similarity=0.401  Sum_probs=28.4

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE  208 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~  208 (312)
                      .....|..|.+.+. +..+  ..-+..||.+|+            .|-.|...+
T Consensus        13 ~~~~~C~~C~~~I~-~~~~--~a~~~~~H~~CF------------~C~~C~~~L   51 (79)
T 1x62_A           13 QKLPMCDKCGTGIV-GVFV--KLRDRHRHPECY------------VCTDCGTNL   51 (79)
T ss_dssp             CCCCCCSSSCCCCC-SSCE--ECSSCEECTTTT------------SCSSSCCCH
T ss_pred             CCCCccccCCCCcc-CcEE--EECcceeCcCcC------------eeCCCCCCC
Confidence            35678999998877 3433  457899998773            588887554


No 157
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=22.61  E-value=3.1  Score=30.14  Aligned_cols=49  Identities=16%  Similarity=0.341  Sum_probs=27.8

Q ss_pred             CCcccccccccccccceeEEe--ccCCcchHHHHHHHHHhcCC----CCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVL--TCGHLYHADCLENITAEINK----YDPACPVCT  205 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~L--pCGH~FH~~CI~~Wl~~~~~----~~~~CPvCR  205 (312)
                      +...| ||......+..+.-=  .|.--||..|+.---.....    ....||.||
T Consensus         9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr   63 (68)
T 2rsd_A            9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCR   63 (68)
T ss_dssp             CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHH
T ss_pred             CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCcc
Confidence            34556 897665544444221  27778999998421100000    147899996


No 158
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=22.12  E-value=53  Score=25.45  Aligned_cols=47  Identities=15%  Similarity=0.247  Sum_probs=34.5

Q ss_pred             CCCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCCc
Q 021416          155 VDMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGEK  209 (312)
Q Consensus       155 ~~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~~  209 (312)
                      .+-..|..|...|....-.  ..=|..||..|..+.+      .+.|..|...+.
T Consensus        28 ~~CF~C~~C~~~L~~~~f~--~~~g~~yC~~cy~~~~------~~~C~~C~~~I~   74 (126)
T 2xqn_T           28 LKHFCCFDCDSILAGEIYV--MVNDKPVCKPCYVKNH------AVVCQGCHNAID   74 (126)
T ss_dssp             GGGSBCTTTCCBCTTSEEE--EETTEEEEHHHHHHHS------CCBCTTTCSBCC
T ss_pred             CCCCCcCCCCCCCCcCEEE--eECCEEechHHhCcCc------CccCcccCCcCC
Confidence            3667899999988733222  4578899999987643      567999987764


No 159
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=22.08  E-value=64  Score=27.44  Aligned_cols=32  Identities=19%  Similarity=0.311  Sum_probs=25.9

Q ss_pred             hccccccccccCCCCCccccccccCccccCCCC
Q 021416          230 NKRWKNRIVDSNLDSNSVVLDRHKGSWNEGKGP  262 (312)
Q Consensus       230 ~k~~r~~~ld~~~~~~~~~~~~~~~~~~~G~~~  262 (312)
                      ++...++++|.++++. ++++++.++++....+
T Consensus         8 ~~y~v~vTLDp~TA~~-l~lSed~r~Vr~~~~~   39 (186)
T 3uv9_A            8 RRYWVDVTLATNNISH-AVIAEDKRQVSSRAGT   39 (186)
T ss_dssp             GGGCCCCCCCCCSSCC-CEECTTSSCEECCCSS
T ss_pred             heeEEEeEeCCCCcCC-ceECCCCCEEeecCCC
Confidence            3788899999999996 8899999988654433


No 160
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=22.00  E-value=5.5  Score=29.75  Aligned_cols=14  Identities=29%  Similarity=0.800  Sum_probs=12.4

Q ss_pred             ccCCcchHHHHHHH
Q 021416          177 TCGHLYHADCLENI  190 (312)
Q Consensus       177 pCGH~FH~~CI~~W  190 (312)
                      .|||.||..|...|
T Consensus        55 ~C~~~FC~~C~~~w   68 (80)
T 2jmo_A           55 GCGFAFCRECKEAY   68 (80)
T ss_dssp             CCSCCEETTTTEEC
T ss_pred             CCCCeeccccCccc
Confidence            58999999998877


No 161
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=21.42  E-value=12  Score=37.28  Aligned_cols=49  Identities=18%  Similarity=0.409  Sum_probs=30.8

Q ss_pred             CCccccccccccc-ccceeEEeccCCcchHHHHHHHHHhcC-CCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLS-ELCVVAVLTCGHLYHADCLENITAEIN-KYDPACPVCT  205 (312)
Q Consensus       156 ~~~~C~ICle~f~-~~~vv~~LpCGH~FH~~CI~~Wl~~~~-~~~~~CPvCR  205 (312)
                      +...| ||...+. .+..+.--.|.--||..|+.---.... .....||.|+
T Consensus        36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~   86 (488)
T 3kv5_D           36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCA   86 (488)
T ss_dssp             CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHH
T ss_pred             CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCc
Confidence            44456 9998764 244454445888999999954222110 1257899996


No 162
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=21.20  E-value=30  Score=27.48  Aligned_cols=39  Identities=18%  Similarity=0.585  Sum_probs=28.0

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE  208 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~  208 (312)
                      ....|..|.+.+....++  ..-|..||.+|+            .|-.|...+
T Consensus        60 ~~~~C~~C~~~I~~~~~v--~a~~~~wH~~CF------------~C~~C~~~L   98 (123)
T 2l4z_A           60 SWKRCAGCGGKIADRFLL--YAMDSYWHSRCL------------KCSSCQAQL   98 (123)
T ss_dssp             SCSBBSSSSSBCCSSSEE--EETTEEEETTTS------------BCTTTCCBG
T ss_pred             cCCcCcCCCCCcCCcEEE--EeCCcEEccccc------------CcCcCCCcc
Confidence            456899999887744334  457889998773            588887554


No 163
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.09  E-value=37  Score=23.97  Aligned_cols=39  Identities=26%  Similarity=0.425  Sum_probs=28.3

Q ss_pred             CCcccccccccccccceeEEeccCCcchHHHHHHHHHhcCCCCCCCCCCCCCC
Q 021416          156 DMQTCGVCSKLLSELCVVAVLTCGHLYHADCLENITAEINKYDPACPVCTLGE  208 (312)
Q Consensus       156 ~~~~C~ICle~f~~~~vv~~LpCGH~FH~~CI~~Wl~~~~~~~~~CPvCR~~~  208 (312)
                      ....|..|.+.+.....+  ..-|..||.+|.            .|-.|...+
T Consensus         8 ~~~~C~~C~~~I~~~~~v--~a~~~~~H~~CF------------~C~~C~~~L   46 (76)
T 2cu8_A            8 MASKCPKCDKTVYFAEKV--SSLGKDWHKFCL------------KCERCSKTL   46 (76)
T ss_dssp             CCCBCTTTCCBCCTTTEE--EETTEEEETTTC------------BCSSSCCBC
T ss_pred             CCCCCcCCCCEeECCeEE--EECCeEeeCCCC------------CCCCCCCcc
Confidence            456899999887745544  456889998763            588887655


Done!