Query 021417
Match_columns 312
No_of_seqs 149 out of 687
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 03:51:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021417.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021417hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tt9_A Plakophilin-2; cell adh 99.8 1.2E-18 4.1E-23 157.0 16.6 178 88-282 9-205 (233)
2 4db6_A Armadillo repeat protei 99.8 8.4E-18 2.9E-22 145.7 19.3 178 103-292 24-201 (210)
3 4db8_A Armadillo-repeat protei 99.8 1E-16 3.5E-21 142.4 21.8 203 88-306 13-221 (252)
4 3nmw_A APC variant protein; AR 99.8 7.7E-18 2.6E-22 160.4 14.9 189 89-292 129-326 (354)
5 4hxt_A De novo protein OR329; 99.8 6.6E-17 2.3E-21 142.6 19.9 203 88-306 3-211 (252)
6 3nmw_A APC variant protein; AR 99.8 1.6E-17 5.6E-22 158.2 16.8 192 105-307 98-305 (354)
7 1xm9_A Plakophilin 1; armadill 99.7 4.6E-17 1.6E-21 159.3 17.0 186 89-292 4-212 (457)
8 3nmz_A APC variant protein; pr 99.7 1.3E-16 4.3E-21 156.9 16.1 193 110-308 167-380 (458)
9 3l6x_A Catenin delta-1; cateni 99.7 4.5E-16 1.5E-20 156.9 19.4 191 85-292 46-262 (584)
10 3nmz_A APC variant protein; pr 99.7 4E-16 1.4E-20 153.3 17.4 192 106-307 215-421 (458)
11 4db8_A Armadillo-repeat protei 99.7 1.1E-15 3.7E-20 135.8 17.6 187 89-292 56-243 (252)
12 4hxt_A De novo protein OR329; 99.7 2.4E-15 8.1E-20 132.5 18.7 188 89-292 46-233 (252)
13 3tt9_A Plakophilin-2; cell adh 99.6 4.5E-16 1.5E-20 140.1 10.8 166 134-310 9-196 (233)
14 1xqr_A HSPBP1 protein; armadil 99.6 1.2E-14 4.1E-19 135.2 18.9 193 87-292 28-230 (296)
15 3ul1_B Importin subunit alpha- 99.6 6.5E-15 2.2E-19 145.8 16.6 206 88-308 58-274 (510)
16 3now_A UNC-45 protein, SD10334 99.6 5.4E-14 1.8E-18 146.4 20.0 201 89-305 423-662 (810)
17 1xm9_A Plakophilin 1; armadill 99.6 3.6E-14 1.2E-18 138.7 15.5 162 134-309 3-186 (457)
18 4db6_A Armadillo repeat protei 99.6 8.3E-14 2.9E-18 120.3 15.9 165 131-307 10-180 (210)
19 4b8j_A Importin subunit alpha- 99.6 8.3E-14 2.8E-18 137.1 17.6 200 87-301 74-279 (528)
20 3tpo_A Importin subunit alpha- 99.5 3.9E-13 1.3E-17 133.4 20.7 180 102-292 262-441 (529)
21 1jdh_A Beta-catenin; beta-cate 99.5 8.6E-14 3E-18 135.8 15.4 189 88-292 60-248 (529)
22 3l6x_A Catenin delta-1; cateni 99.5 7.8E-14 2.7E-18 140.6 15.3 167 131-310 46-237 (584)
23 2z6h_A Catenin beta-1, beta-ca 99.5 1.7E-13 5.7E-18 139.0 16.2 189 88-292 57-245 (644)
24 3tpo_A Importin subunit alpha- 99.5 4.3E-13 1.5E-17 133.1 18.0 204 89-307 121-335 (529)
25 2kr4_A Ubiquitin conjugation f 99.5 8.1E-16 2.8E-20 117.3 -1.6 62 6-67 13-78 (85)
26 2kre_A Ubiquitin conjugation f 99.5 1.6E-15 5.5E-20 119.2 0.1 65 6-73 28-96 (100)
27 1jdh_A Beta-catenin; beta-cate 99.5 6.9E-13 2.4E-17 129.4 18.3 203 88-307 18-227 (529)
28 3ul1_B Importin subunit alpha- 99.5 5.5E-13 1.9E-17 131.9 17.5 180 102-292 243-422 (510)
29 1wgm_A Ubiquitin conjugation f 99.5 3.6E-15 1.2E-19 116.7 -0.0 62 6-67 21-87 (98)
30 2z6h_A Catenin beta-1, beta-ca 99.5 1.2E-12 4E-17 132.7 18.3 203 88-307 15-224 (644)
31 1wa5_B Importin alpha subunit; 99.5 2E-12 6.7E-17 127.6 19.3 203 89-306 89-298 (530)
32 4b8j_A Importin subunit alpha- 99.4 2.4E-12 8.2E-17 126.7 18.0 202 89-306 119-327 (528)
33 2z6g_A B-catenin; FULL-length, 99.4 1.3E-12 4.5E-17 135.8 16.2 195 88-307 116-318 (780)
34 3now_A UNC-45 protein, SD10334 99.4 1E-12 3.5E-17 136.7 15.2 193 102-309 506-709 (810)
35 2z6g_A B-catenin; FULL-length, 99.4 2.1E-12 7.3E-17 134.2 16.7 188 89-292 194-381 (780)
36 2jdq_A Importin alpha-1 subuni 99.4 9E-12 3.1E-16 118.8 18.1 202 88-305 65-274 (450)
37 1wa5_B Importin alpha subunit; 99.4 9E-12 3.1E-16 122.9 18.4 190 104-305 144-339 (530)
38 3m62_A Ubiquitin conjugation f 99.4 2.1E-14 7.2E-19 149.6 -0.8 62 6-67 890-956 (968)
39 2bay_A PRE-mRNA splicing facto 99.4 9.7E-15 3.3E-19 104.4 -3.0 54 7-60 3-59 (61)
40 2jdq_A Importin alpha-1 subuni 99.4 2.1E-11 7.1E-16 116.3 19.1 218 56-292 162-382 (450)
41 1xqr_A HSPBP1 protein; armadil 99.4 2.4E-11 8.1E-16 112.9 17.2 157 89-257 83-240 (296)
42 2f42_A STIP1 homology and U-bo 99.3 8.9E-14 3E-18 120.0 -0.8 62 6-67 105-171 (179)
43 3opb_A SWI5-dependent HO expre 99.3 2.9E-12 1E-16 131.9 10.2 172 125-306 449-647 (778)
44 2yu4_A E3 SUMO-protein ligase 99.2 7.8E-13 2.7E-17 102.5 -2.3 65 3-67 3-81 (94)
45 3grl_A General vesicular trans 99.0 7.4E-09 2.5E-13 104.5 18.1 194 82-292 16-233 (651)
46 2c2l_A CHIP, carboxy terminus 99.0 2.1E-11 7.2E-16 110.9 -1.2 62 6-67 207-273 (281)
47 3opb_A SWI5-dependent HO expre 98.9 2E-08 6.8E-13 103.5 16.1 187 106-306 349-604 (778)
48 1t1h_A Gspef-atpub14, armadill 98.8 7.5E-10 2.6E-14 82.0 -0.2 63 5-67 6-73 (78)
49 3htk_C E3 SUMO-protein ligase 98.4 1.5E-08 5.1E-13 91.7 -1.7 65 3-67 177-250 (267)
50 3grl_A General vesicular trans 98.3 3.4E-06 1.1E-10 85.3 12.3 143 128-281 117-264 (651)
51 4gmo_A Putative uncharacterize 97.9 9.4E-05 3.2E-09 75.7 12.5 169 88-272 35-228 (684)
52 3ltj_A Alpharep-4; protein eng 97.8 0.0014 4.9E-08 55.3 16.8 92 84-208 11-102 (201)
53 3ltm_A Alpha-REP4; protein eng 97.7 0.00095 3.3E-08 56.9 14.1 53 225-292 143-195 (211)
54 3ltj_A Alpharep-4; protein eng 97.4 0.0038 1.3E-07 52.6 13.6 115 133-292 76-190 (201)
55 3ltm_A Alpha-REP4; protein eng 97.3 0.0037 1.3E-07 53.1 13.4 138 86-283 18-155 (211)
56 4gmo_A Putative uncharacterize 97.1 0.0025 8.4E-08 65.1 11.1 163 133-308 35-228 (684)
57 3ztg_A E3 ubiquitin-protein li 97.0 8.7E-05 3E-09 56.0 -0.4 62 6-67 12-81 (92)
58 1oyz_A Hypothetical protein YI 96.6 0.046 1.6E-06 48.3 14.4 55 225-292 159-213 (280)
59 1oyz_A Hypothetical protein YI 96.6 0.062 2.1E-06 47.4 14.9 117 104-254 104-220 (280)
60 3dad_A FH1/FH2 domain-containi 96.2 0.19 6.5E-06 46.9 15.9 181 87-281 118-315 (339)
61 3fl2_A E3 ubiquitin-protein li 96.0 0.001 3.4E-08 53.0 -0.2 61 7-67 52-118 (124)
62 1te4_A Conserved protein MTH18 95.8 0.031 1E-06 44.1 7.8 87 135-252 44-130 (131)
63 1z6u_A NP95-like ring finger p 95.7 0.0018 6E-08 53.7 0.0 61 7-67 78-144 (150)
64 2qk2_A LP04448P; mini spindles 95.6 0.15 5.1E-06 44.2 12.2 167 103-292 27-197 (242)
65 2y43_A E3 ubiquitin-protein li 95.5 0.0015 5.2E-08 49.8 -0.9 61 7-67 22-87 (99)
66 4fdd_A Transportin-1; heat rep 95.5 0.099 3.4E-06 53.9 12.3 158 103-280 140-308 (852)
67 2qk2_A LP04448P; mini spindles 95.2 0.23 7.7E-06 43.0 12.1 132 104-256 70-206 (242)
68 1b3u_A Protein (protein phosph 94.9 0.15 5.2E-06 49.2 11.1 136 134-291 442-578 (588)
69 3b2a_A TON_1937, putative unch 94.6 0.35 1.2E-05 43.1 11.3 148 89-257 73-220 (265)
70 4fdd_A Transportin-1; heat rep 94.5 0.26 8.8E-06 50.8 12.0 171 104-292 103-277 (852)
71 1b3u_A Protein (protein phosph 94.5 0.79 2.7E-05 44.1 14.8 160 104-284 177-337 (588)
72 3dad_A FH1/FH2 domain-containi 94.3 0.51 1.7E-05 44.0 12.3 121 156-281 134-264 (339)
73 2vgl_B AP-2 complex subunit be 93.9 0.24 8.3E-06 49.1 10.1 161 103-281 133-293 (591)
74 1te4_A Conserved protein MTH18 93.8 0.12 4E-06 40.6 6.2 82 183-291 43-124 (131)
75 2vgl_B AP-2 complex subunit be 93.8 0.25 8.5E-06 49.0 9.8 95 183-292 87-181 (591)
76 1w63_A Adapter-related protein 93.8 2.2 7.5E-05 42.5 16.8 158 104-290 247-404 (618)
77 2qk1_A Protein STU2; STU2P, XM 93.7 1.2 4.2E-05 39.1 13.4 139 106-256 76-221 (249)
78 2qk1_A Protein STU2; STU2P, XM 93.6 0.35 1.2E-05 42.7 9.5 171 104-292 29-212 (249)
79 2fv2_A RCD1 required for cell 93.2 1.7 5.8E-05 39.0 13.2 145 110-257 75-226 (268)
80 2ckl_A Polycomb group ring fin 93.1 0.018 6.1E-07 44.5 0.1 62 6-67 14-84 (108)
81 2ecw_A Tripartite motif-contai 93.1 0.011 3.8E-07 43.0 -1.0 56 6-61 18-81 (85)
82 2ecv_A Tripartite motif-contai 91.9 0.018 6.2E-07 41.8 -1.2 56 6-61 18-81 (85)
83 2egp_A Tripartite motif-contai 91.9 0.008 2.8E-07 43.4 -3.1 56 6-61 11-75 (79)
84 2ckl_B Ubiquitin ligase protei 91.8 0.022 7.4E-07 47.4 -1.0 62 6-67 53-121 (165)
85 3b2a_A TON_1937, putative unch 91.7 1.8 6.2E-05 38.5 11.2 161 103-292 45-210 (265)
86 3hct_A TNF receptor-associated 91.6 0.02 6.8E-07 45.0 -1.4 62 6-67 17-83 (118)
87 1w63_A Adapter-related protein 91.5 0.52 1.8E-05 47.1 8.6 111 153-282 120-230 (618)
88 1ibr_B P95, importin beta-1 su 91.2 1.5 5.1E-05 40.6 11.1 170 109-292 107-280 (462)
89 2csy_A Zinc finger protein 183 90.3 0.036 1.2E-06 40.3 -0.9 60 6-66 14-77 (81)
90 1jm7_A BRCA1, breast cancer ty 90.2 0.045 1.5E-06 42.1 -0.5 61 7-67 21-88 (112)
91 1jm7_B BARD1, BRCA1-associated 90.1 0.027 9.3E-07 44.1 -1.9 59 7-67 22-85 (117)
92 3hcs_A TNF receptor-associated 89.2 0.043 1.5E-06 45.7 -1.4 62 6-67 17-83 (170)
93 2bpt_A Importin beta-1 subunit 88.6 8.9 0.00031 38.6 15.1 151 85-256 2-165 (861)
94 1ibr_B P95, importin beta-1 su 88.5 2.1 7.1E-05 39.6 9.6 142 104-256 143-289 (462)
95 1u6g_C TIP120 protein, CAND1; 88.5 1 3.4E-05 48.3 8.3 153 87-255 6-163 (1230)
96 1qgr_A Protein (importin beta 87.5 12 0.00041 37.7 15.3 172 104-292 230-429 (876)
97 1qgr_A Protein (importin beta 87.0 9.7 0.00033 38.4 14.3 169 109-292 107-280 (876)
98 2vgl_A Adaptor protein complex 86.9 21 0.00072 35.5 16.4 94 183-292 112-208 (621)
99 3lrq_A E3 ubiquitin-protein li 86.4 0.084 2.9E-06 40.1 -1.2 58 7-64 22-84 (100)
100 2bpt_A Importin beta-1 subunit 85.2 8 0.00027 38.9 12.5 172 106-292 110-287 (861)
101 3ng2_A RNF4, snurf, ring finge 85.1 0.18 6.3E-06 35.1 0.2 52 7-58 10-70 (71)
102 2djb_A Polycomb group ring fin 83.3 0.23 7.8E-06 35.0 0.0 53 6-58 14-69 (72)
103 3eg5_B Protein diaphanous homo 83.0 31 0.0011 32.3 15.8 165 110-278 86-272 (383)
104 4ayc_A E3 ubiquitin-protein li 82.5 0.18 6.1E-06 40.6 -0.9 58 8-67 54-115 (138)
105 1u6g_C TIP120 protein, CAND1; 82.1 3 0.0001 44.6 8.1 180 88-287 83-271 (1230)
106 2xeu_A Ring finger protein 4; 81.2 0.26 8.9E-06 33.5 -0.4 50 9-58 5-63 (64)
107 3l11_A E3 ubiquitin-protein li 79.9 0.11 3.7E-06 40.3 -3.0 62 6-67 14-87 (115)
108 3tjz_B Coatomer subunit gamma; 79.6 15 0.00051 34.2 11.1 93 183-292 105-197 (355)
109 3ebb_A Phospholipase A2-activa 78.5 38 0.0013 30.6 16.1 153 107-269 118-273 (304)
110 1rmd_A RAG1; V(D)J recombinati 78.4 0.24 8.2E-06 38.4 -1.5 60 7-66 23-88 (116)
111 2f31_A Diaphanous protein homo 77.6 34 0.0012 29.5 13.8 147 132-280 42-208 (233)
112 3tjz_B Coatomer subunit gamma; 77.2 25 0.00084 32.7 11.8 91 153-257 117-207 (355)
113 2ecy_A TNF receptor-associated 77.0 0.41 1.4E-05 33.0 -0.4 48 6-53 14-64 (66)
114 2yur_A Retinoblastoma-binding 76.5 0.34 1.2E-05 34.4 -1.0 53 6-58 14-72 (74)
115 2vgl_A Adaptor protein complex 75.8 3.5 0.00012 41.2 5.9 92 153-256 124-217 (621)
116 1x5b_A Signal transducing adap 75.3 14 0.00047 30.5 8.5 72 183-255 53-125 (163)
117 2iw3_A Elongation factor 3A; a 74.2 16 0.00055 38.8 10.6 72 182-257 133-206 (986)
118 4ffb_C Protein STU2; tubulin f 73.3 34 0.0012 29.7 11.2 171 106-292 24-204 (278)
119 1juq_A ADP-ribosylation factor 67.6 24 0.00082 29.2 8.4 72 183-255 51-128 (171)
120 1mhq_A ADP-ribosylation factor 67.3 30 0.001 27.9 8.7 73 182-255 38-116 (148)
121 3g2s_A C-terminal fragment of 66.9 31 0.001 27.9 8.7 72 183-255 49-126 (149)
122 3ldz_A STAM-1, signal transduc 66.3 22 0.00074 28.4 7.6 70 183-254 43-113 (140)
123 1g25_A CDK-activating kinase a 66.0 1.6 5.3E-05 29.8 0.5 51 8-58 4-62 (65)
124 3knv_A TNF receptor-associated 65.8 0.41 1.4E-05 38.8 -3.0 56 6-61 30-97 (141)
125 4ap4_A E3 ubiquitin ligase RNF 65.2 1.4 4.8E-05 34.2 0.2 55 6-60 6-69 (133)
126 2of3_A ZYG-9; multifunctional 63.4 30 0.001 30.8 8.7 110 134-268 133-246 (266)
127 3zyq_A Hepatocyte growth facto 63.2 21 0.00073 30.8 7.5 73 182-255 45-118 (226)
128 2ysl_A Tripartite motif-contai 59.8 1.5 5.1E-05 30.5 -0.6 49 6-54 19-72 (73)
129 2bnx_A Diaphanous protein homo 59.6 1.1E+02 0.0038 28.4 14.4 165 111-279 25-211 (386)
130 1dvp_A HRS, hepatocyte growth 58.0 29 0.001 29.7 7.4 71 183-254 43-114 (220)
131 3eg5_B Protein diaphanous homo 51.2 58 0.002 30.4 8.8 97 182-282 109-227 (383)
132 2f31_A Diaphanous protein homo 50.8 34 0.0012 29.4 6.7 60 196-257 68-127 (233)
133 2iw3_A Elongation factor 3A; a 49.6 2.6E+02 0.0088 29.6 16.3 146 92-253 138-322 (986)
134 2ect_A Ring finger protein 126 49.6 8.5 0.00029 26.9 2.1 51 8-58 16-71 (78)
135 2ct2_A Tripartite motif protei 47.7 2.7 9.1E-05 30.2 -0.9 55 7-61 15-81 (88)
136 4ady_A RPN2, 26S proteasome re 47.1 1.5E+02 0.005 31.4 11.8 55 225-289 611-665 (963)
137 4ffb_C Protein STU2; tubulin f 47.1 86 0.0029 27.0 8.9 134 107-257 71-214 (278)
138 1elk_A Target of MYB1; superhe 44.7 1E+02 0.0035 24.8 8.3 71 183-254 54-129 (157)
139 3u0r_A Apoptosis inhibitor 5; 43.4 59 0.002 31.7 7.5 75 191-282 37-111 (507)
140 2ea6_A Ring finger protein 4; 40.3 5 0.00017 27.1 -0.4 45 7-51 15-68 (69)
141 2d8t_A Dactylidin, ring finger 39.3 1.6 5.5E-05 30.4 -3.2 48 5-52 13-62 (71)
142 3u0r_A Apoptosis inhibitor 5; 36.8 3E+02 0.01 26.7 11.4 49 108-169 27-75 (507)
143 2yu4_A E3 SUMO-protein ligase 36.7 9.2 0.00031 28.2 0.6 29 39-67 7-40 (94)
144 2db0_A 253AA long hypothetical 35.8 2.1E+02 0.0072 24.6 13.7 65 183-255 182-246 (253)
145 4ap4_A E3 ubiquitin ligase RNF 32.4 5.7 0.0002 30.5 -1.3 32 27-58 101-132 (133)
146 2bnx_A Diaphanous protein homo 32.4 99 0.0034 28.8 7.1 84 197-282 73-165 (386)
147 1ho8_A Vacuolar ATP synthase s 31.5 2.8E+02 0.0096 26.7 10.2 122 157-281 185-328 (480)
148 2ysj_A Tripartite motif-contai 31.1 6.5 0.00022 26.3 -1.0 37 8-44 21-62 (63)
149 2of3_A ZYG-9; multifunctional 29.3 2.9E+02 0.01 24.2 13.4 162 104-292 59-228 (266)
150 4ady_A RPN2, 26S proteasome re 28.3 2.1E+02 0.0072 30.2 9.3 67 180-255 609-676 (963)
151 1dvp_A HRS, hepatocyte growth 26.4 1.9E+02 0.0064 24.4 7.4 107 89-210 6-114 (220)
152 2xpp_A IWS1, ECU08_0440; trans 25.9 2.5E+02 0.0087 22.4 9.3 92 111-209 40-134 (145)
153 4f8b_A NADPH-dependent 7-cyano 25.0 18 0.0006 30.0 0.4 18 40-57 54-74 (165)
154 3oc3_A Helicase MOT1, MOT1; re 24.7 1.4E+02 0.0048 30.1 6.7 144 90-254 177-327 (800)
155 1x5b_A Signal transducing adap 23.8 2.1E+02 0.0071 23.1 6.8 71 87-167 52-123 (163)
156 3c2g_A SYS-1 protein; beta-cat 22.1 5.1E+02 0.017 24.5 10.7 120 156-282 259-378 (619)
157 2ecm_A Ring finger and CHY zin 21.2 11 0.00038 24.1 -1.3 12 39-50 5-16 (55)
158 1wa5_C Importin alpha RE-expor 21.1 2.5E+02 0.0084 28.9 8.3 108 132-255 34-152 (960)
159 1ho8_A Vacuolar ATP synthase s 20.7 3.2E+02 0.011 26.3 8.4 112 26-167 356-474 (480)
No 1
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.80 E-value=1.2e-18 Score=156.97 Aligned_cols=178 Identities=12% Similarity=0.083 Sum_probs=150.9
Q ss_pred HHHHHHHHHHhcccCCCc--hhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 021417 88 EVLEINSKITAACKSEDQ--TGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLT 165 (312)
Q Consensus 88 ~v~~ll~~l~~~~~~~d~--~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~ 165 (312)
.+..+++.|.+ +|+ +.+..|+..|+.++.+++.||..+.++|++|.|+.+|.+. +.+++++|..+|.
T Consensus 9 ~i~~lV~lL~s----~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~-------~~~vq~~Aa~aL~ 77 (233)
T 3tt9_A 9 TLERAVSMLEA----DHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-------NEDVQRAVCGALR 77 (233)
T ss_dssp CHHHHHHTCCS----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCC-------CHHHHHHHHHHHH
T ss_pred cHHHHHHHhCC----CCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHH
Confidence 45667777754 455 5567799999999999999999999999999999999765 3579999999999
Q ss_pred hcCCCChhHHHhccCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc---CC----
Q 021417 166 LLFPLAGEALTYLGSASSMHCMVWFLK-SGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK---EP---- 237 (312)
Q Consensus 166 ~L~~~~~e~k~~l~~~~~l~~lv~~L~-~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~---~~---- 237 (312)
+|+..++++|..|.+.|+|+.++++|+ +++.+.+++|+.+|.+||.. +.++..|.+ ++++.|++++. .|
T Consensus 78 nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~ 154 (233)
T 3tt9_A 78 NLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMIT--EALLTLTENIIIPFSGWPEG 154 (233)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHH--HHHHHHCCCCCHHHHCCCGG
T ss_pred HHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHh--ccHHHHHHHHhccccCCccc
Confidence 997767899999999999999999998 57999999999999999865 667888855 57999998763 11
Q ss_pred --------CChHHHHHHHHHHHHhhcCCCCCcchHHHHHHc-CcHHHHHHHhhh
Q 021417 238 --------ICPTATEASFVVVYHMITSASAADKPIQKFVDM-GLVSLLLETLVD 282 (312)
Q Consensus 238 --------~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~-G~V~~LvelL~~ 282 (312)
.++.....|.-+|.||++.. +++|..|.+. |.|+.|+.+|..
T Consensus 155 ~~~~~~~~~~~~v~~na~~~L~nLss~~---~~~R~~~r~~~Gli~~Lv~~l~~ 205 (233)
T 3tt9_A 155 DYPKANGLLDFDIFYNVTGCLRNMSSAG---ADGRKAMRRCDGLIDSLVHYVRG 205 (233)
T ss_dssp GCCCCCTTCCHHHHHHHHHHHHHHTTSC---HHHHHHHHTSTTHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHhcCC---HHHHHHHHHCCCcHHHHHHHHHh
Confidence 25688999999999998864 4799999986 799999999975
No 2
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.79 E-value=8.4e-18 Score=145.69 Aligned_cols=178 Identities=15% Similarity=0.240 Sum_probs=157.7
Q ss_pred CCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCC
Q 021417 103 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS 182 (312)
Q Consensus 103 ~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~ 182 (312)
.|+..+..|+..|..++..++.++..+.+.|+++.|+.+|.+. +.++++.|+.+|.+|+..+++++..+.+.|
T Consensus 24 ~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g 96 (210)
T 4db6_A 24 PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP-------NEQILQEALWALSNIASGGNEQIQAVIDAG 96 (210)
T ss_dssp SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcCCcHHHHHHHHCC
Confidence 5677778899999999999999999999999999999999765 357899999999999766788888888999
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcc
Q 021417 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 262 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~ 262 (312)
.++.++.+|++++...|.+|+.+|.+|+..++..+..+.+. |+++.|+++++++ ++...+.|+.+|.+++... +.
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~---~~ 171 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSP-NEQILQEALWALSNIASGG---NE 171 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSC---HH
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHc-CcHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCC---cH
Confidence 99999999999999999999999999987666666666565 9999999999987 8899999999999999874 37
Q ss_pred hHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 263 PIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 263 Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
++..+++.|+++.|+++|.+.+..+.+.|+
T Consensus 172 ~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~ 201 (210)
T 4db6_A 172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQ 201 (210)
T ss_dssp HHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999999999877767777766
No 3
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.76 E-value=1e-16 Score=142.45 Aligned_cols=203 Identities=15% Similarity=0.280 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 021417 88 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 167 (312)
Q Consensus 88 ~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L 167 (312)
....+++.|.+ +|++.+..|+..|+.+...++.++..+.+.|+++.|+.+|.+. +..+++.|+.+|.++
T Consensus 13 ~~~~~~~~L~s----~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l 81 (252)
T 4db8_A 13 ELPQMTQQLNS----DDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-------NEQILQEALWALSNI 81 (252)
T ss_dssp SHHHHHHHHHS----SCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-------CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcC----CCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-------CHHHHHHHHHHHHHH
Confidence 45566777765 5677888999999887776788999999999999999999765 257899999999999
Q ss_pred CCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHH
Q 021417 168 FPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASF 247 (312)
Q Consensus 168 ~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al 247 (312)
+..+++++..+.+.|.++.++.+|++++.+.|.+|+.+|.+|+...+.....+.+. |+++.|+++++++ ++...+.|+
T Consensus 82 ~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~~-~~~v~~~a~ 159 (252)
T 4db8_A 82 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSP-NEQILQEAL 159 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHGGGCS-CHHHHHHHH
T ss_pred hcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHC-CCHHHHHHHHhCC-CHHHHHHHH
Confidence 77678888888889999999999999999999999999999976544443666565 9999999999887 889999999
Q ss_pred HHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh-----cc-CCHHHHHHHhhc
Q 021417 248 VVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VF-STDFAAVITGEE 306 (312)
Q Consensus 248 ~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL-----L~-~~~eGR~ai~~~ 306 (312)
.+|.+|+... +.++..+++.|+++.|+++|.+.+..+.+.++ +| ..++.+..+.+.
T Consensus 160 ~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 221 (252)
T 4db8_A 160 WALSNIASGG---NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA 221 (252)
T ss_dssp HHHHHHTTSC---HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHcCC---hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 9999999864 36888899999999999999877666777766 55 456777777654
No 4
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.75 E-value=7.7e-18 Score=160.43 Aligned_cols=189 Identities=16% Similarity=0.173 Sum_probs=156.5
Q ss_pred HHHHHHHHHhcccCCCchhhhHHHHHHHHHHHh-chhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 021417 89 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKE-SERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 167 (312)
Q Consensus 89 v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~-s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L 167 (312)
+..|++-|. .+++..+..|+..|+.++.. ++.||..+.++|++|.|+.+|.... +.++++.|+.+|.+|
T Consensus 129 Ip~LV~LL~----s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~------~~~~~~~A~~aL~nL 198 (354)
T 3nmw_A 129 MRALVAQLK----SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK------KESTLKSVLSALWNL 198 (354)
T ss_dssp HHHHHHGGG----CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC----CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC------CHHHHHHHHHHHHHH
Confidence 444555553 35677778899999999985 6789999999999999999874432 246899999999999
Q ss_pred CCCChhHHHhcc-CCCCHHHHHHHHhcCCH----HHHHHHHHHHHHHhc---cchHHHHHhhhhhchHHHHHHhhcCCCC
Q 021417 168 FPLAGEALTYLG-SASSMHCMVWFLKSGDL----SRRRNTVLVLREVIS---SDHRRVNMFLEIEGAIESLYTLIKEPIC 239 (312)
Q Consensus 168 ~~~~~e~k~~l~-~~~~l~~lv~~L~~gs~----~~r~~Aa~lL~~Ls~---~~~~~~~~Ig~~~g~i~~LV~ll~~~~~ 239 (312)
+..++++|..+. ..|.|+.|+.+|++++. +.+++|+.+|.+|+. ..++++..+.+. |+++.||.+|+++ +
T Consensus 199 s~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~-g~i~~Lv~lL~~~-~ 276 (354)
T 3nmw_A 199 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN-NCLQTLLQHLKSH-S 276 (354)
T ss_dssp HTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT-THHHHHHHHTTCS-C
T ss_pred HccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc-CCHHHHHHHHcCC-C
Confidence 765678888777 79999999999998754 589999999999986 457788888676 9999999999987 8
Q ss_pred hHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 240 PTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 240 ~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
...++.|..+|.||+... .+++..+++.|+|++|+++|.+.+..+.+.|.
T Consensus 277 ~~v~~~A~~aL~nLa~~~---~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~ 326 (354)
T 3nmw_A 277 LTIVSNACGTLWNLSARN---PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSA 326 (354)
T ss_dssp HHHHHHHHHHHHHHTSSC---HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCC---HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 899999999999999543 37999999999999999999876666666555
No 5
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.75 E-value=6.6e-17 Score=142.55 Aligned_cols=203 Identities=18% Similarity=0.249 Sum_probs=171.4
Q ss_pred HHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 021417 88 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 167 (312)
Q Consensus 88 ~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L 167 (312)
.+..+++.+.+ .++..+..|+..|..++..++.++..+.+.|+++.|+.+|.+. +.++++.|+.+|.+|
T Consensus 3 ~i~~L~~~L~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-------~~~v~~~a~~~L~~l 71 (252)
T 4hxt_A 3 DVEKLVKLLTS----TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-------DSEVQKEAARALANI 71 (252)
T ss_dssp HHHHHHHHTTC----SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-------CHHHHHHHHHHHHHH
Confidence 35566666654 4567778899999999999999999999999999999999765 357899999999999
Q ss_pred CCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHH
Q 021417 168 FPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASF 247 (312)
Q Consensus 168 ~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al 247 (312)
+..+++++..+.+.+.++.++.+|++++.+.|.+|+.+|.+|+..+++++..+.+. |+++.|+++++++ ++.....|+
T Consensus 72 ~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~l~~~-~~~~~~~a~ 149 (252)
T 4hxt_A 72 ASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA-GGVEVLVKLLTST-DSEVQKEAA 149 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHTTCS-CHHHHHHHH
T ss_pred HcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcCC-CHHHHHHHH
Confidence 76568888888899999999999999999999999999999986667778778675 9999999999987 789999999
Q ss_pred HHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh-----ccC-CHHHHHHHhhc
Q 021417 248 VVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VFS-TDFAAVITGEE 306 (312)
Q Consensus 248 ~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL-----L~~-~~eGR~ai~~~ 306 (312)
.+|.+|+... +.++..+++.|+++.|+++|.+.+..+.+.++ +|. .++.+..+.+.
T Consensus 150 ~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~ 211 (252)
T 4hxt_A 150 RALANIASGP---DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDA 211 (252)
T ss_dssp HHHHHHTTSC---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHT
T ss_pred HHHHHHHcCC---HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 9999999864 36778999999999999999876666666666 555 55666666553
No 6
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.75 E-value=1.6e-17 Score=158.20 Aligned_cols=192 Identities=13% Similarity=0.038 Sum_probs=160.3
Q ss_pred chhhhHHHHHHHHHHHhchhhhHHHHh-cCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCC-ChhHHHhccCCC
Q 021417 105 QTGGRDLVAKIKKWIKESERNKRCIVD-YGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPL-AGEALTYLGSAS 182 (312)
Q Consensus 105 ~~~~~~al~~l~~lak~s~~nR~~l~~-aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~-~~e~k~~l~~~~ 182 (312)
+..+..|+..|..++..++.+|..+.. .|++|.|+.+|.+. +.++++.|..+|.+|+.. ++++|..+.+.|
T Consensus 98 ~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-------~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G 170 (354)
T 3nmw_A 98 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-------SEDLQQVIASVLRNLSWRADVNSKKTLREVG 170 (354)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCS-------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCC-------CHHHHHHHHHHHHHHhccCCHHHHHHHHHCC
Confidence 345678999999999999889998865 47899999999764 357899999999999763 577899998999
Q ss_pred CHHHHHHHH-hcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCCh---HHHHHHHHHHHHhhc---
Q 021417 183 SMHCMVWFL-KSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICP---TATEASFVVVYHMIT--- 255 (312)
Q Consensus 183 ~l~~lv~~L-~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~---~a~~~Al~aL~~L~~--- 255 (312)
.++.|+.+| ++++.+.+++|+.+|.+|+...++++..|+...|+++.|+++|+.+.+. ...+.|..+|.||+.
T Consensus 171 ~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a 250 (354)
T 3nmw_A 171 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 250 (354)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhcc
Confidence 999999975 6678999999999999998755777888874459999999999876222 478999999999986
Q ss_pred -CCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh-----cc-CCHHHHHHHhhcC
Q 021417 256 -SASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VF-STDFAAVITGEER 307 (312)
Q Consensus 256 -~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL-----L~-~~~eGR~ai~~~~ 307 (312)
. +.||..++++|++++|+++|.+.+..+.+.|. |+ ..++.+.++.+.+
T Consensus 251 ~~----~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G 305 (354)
T 3nmw_A 251 TN----EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 305 (354)
T ss_dssp TC----HHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTT
T ss_pred CC----HHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCC
Confidence 4 37999999999999999999876666666655 66 5789999998754
No 7
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.73 E-value=4.6e-17 Score=159.33 Aligned_cols=186 Identities=12% Similarity=0.099 Sum_probs=156.4
Q ss_pred HHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 021417 89 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 168 (312)
Q Consensus 89 v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~ 168 (312)
+..+++.|.+ +|+..+..|+..|+.++..++.+|..+.++|++|.|+.+|.+. +.++++.|..+|.+|+
T Consensus 4 l~~lv~~L~s----~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~-------~~~~~~~A~~aL~nLa 72 (457)
T 1xm9_A 4 IPKAVQYLSS----QDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-------NQNVQQAAAGALRNLV 72 (457)
T ss_dssp HHHHHHHHHS----SCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHh
Confidence 5567777764 4677888999999999998888898999999999999999764 3578999999999997
Q ss_pred CCChhHHHhccCCCCHHHHHHHHh-cCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc--------CC--
Q 021417 169 PLAGEALTYLGSASSMHCMVWFLK-SGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK--------EP-- 237 (312)
Q Consensus 169 ~~~~e~k~~l~~~~~l~~lv~~L~-~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~--------~~-- 237 (312)
..++++|..|.+.|.++.++.+|+ +++.+.+++|+.+|.+|+.. ++++..|.+ |+++.|++++. ++
T Consensus 73 ~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~ 149 (457)
T 1xm9_A 73 FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA--DALPVLADRVIIPFSGWCDGNSN 149 (457)
T ss_dssp SSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH--HHHHHHHHHTTHHHHTCC-----
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh--ccHHHHHHHHhccccccccCccc
Confidence 766899999999999999999999 89999999999999999876 667887755 99999999993 22
Q ss_pred -----CChHHHHHHHHHHHHhhcCCCCCcchHHHHHHc-CcHHHHHHHhhhc------ccchhhhhh
Q 021417 238 -----ICPTATEASFVVVYHMITSASAADKPIQKFVDM-GLVSLLLETLVDA------QRSLCEKPW 292 (312)
Q Consensus 238 -----~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~-G~V~~LvelL~~~------~~~~~e~aL 292 (312)
.++...+.|..+|.|||..+ +||..+++. |++++|+++|.++ +..+.|.++
T Consensus 150 ~~~e~~~~~v~~~a~~aL~nLs~~~----~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~ 212 (457)
T 1xm9_A 150 MSREVVDPEVFFNATGCLRNLSSAD----AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCM 212 (457)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTSH----HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHH
T ss_pred hhcccccHHHHHHHHHHHHHHccCH----HHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHH
Confidence 13455669999999999875 799999998 9999999999752 334555554
No 8
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.71 E-value=1.3e-16 Score=156.91 Aligned_cols=193 Identities=16% Similarity=0.118 Sum_probs=156.3
Q ss_pred HHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhccc----ccccchhHHHHHHHHHHHHhcCCCChhHHHhcc-CCCCH
Q 021417 110 DLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFS----KTCLDEHVSVLEEILSTLTLLFPLAGEALTYLG-SASSM 184 (312)
Q Consensus 110 ~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~----~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~-~~~~l 184 (312)
+|+..|.+++.+ ++||.+|.+.|+++.|+.+|.... ......+..++++|..+|.+|+..++++|..+. ..|+|
T Consensus 167 qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaI 245 (458)
T 3nmz_A 167 PAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCM 245 (458)
T ss_dssp HHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcH
Confidence 689999999664 779999999999999999995310 000012467899999999999877777888775 56779
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcc-chHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhc-CCCCCcc
Q 021417 185 HCMVWFLKSGDLSRRRNTVLVLREVISS-DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT-SASAADK 262 (312)
Q Consensus 185 ~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~-~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~-~~~~~~~ 262 (312)
+.++++|++++.+.+++|+.+|.+|+.. ++.++..|.+. |+++.||++|....++...+.|+.+|+||+. .+ .
T Consensus 246 p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~-GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~----~ 320 (458)
T 3nmz_A 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEVKKESTLKSVLSALWNLSAHCT----E 320 (458)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT-THHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH----H
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc-CCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH----H
Confidence 9999999999999999999999999863 46788888776 9999999986543378899999999999998 53 7
Q ss_pred hHHHHH-HcCcHHHHHHHhhhcccc----hhhhhh-----cc----CCHHHHHHHhhcCC
Q 021417 263 PIQKFV-DMGLVSLLLETLVDAQRS----LCEKPW-----VF----STDFAAVITGEERP 308 (312)
Q Consensus 263 Nr~~~V-~~G~V~~LvelL~~~~~~----~~e~aL-----L~----~~~eGR~ai~~~~~ 308 (312)
|+..++ ..|++++|+++|...... +.+.+. |+ .+++.|++|.++++
T Consensus 321 nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~ 380 (458)
T 3nmz_A 321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 380 (458)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred HHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc
Confidence 999999 799999999999754332 556554 55 58999999987653
No 9
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.70 E-value=4.5e-16 Score=156.91 Aligned_cols=191 Identities=12% Similarity=0.080 Sum_probs=158.5
Q ss_pred ChHHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHH
Q 021417 85 SSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTL 164 (312)
Q Consensus 85 ~~~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL 164 (312)
....+..+|+.|.+ +|+..+.+|+..|+.++..++.||..++++|+||.|+.+|.+. +..++++|+.+|
T Consensus 46 ~~~~i~~LV~~L~s----~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~-------~~~vq~~Aa~AL 114 (584)
T 3l6x_A 46 RQPELPEVIAMLGF----RLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-------KKEVHLGACGAL 114 (584)
T ss_dssp CCCCHHHHHHHTTC----SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS-------SHHHHHHHHHHH
T ss_pred ccccHHHHHHHHCC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC-------CHHHHHHHHHHH
Confidence 34568888888854 5677788899999999999999999999999999999999765 367999999999
Q ss_pred HhcCCC-ChhHHHhccCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc-------
Q 021417 165 TLLFPL-AGEALTYLGSASSMHCMVWFLKSG-DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK------- 235 (312)
Q Consensus 165 ~~L~~~-~~e~k~~l~~~~~l~~lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~------- 235 (312)
.+|+.. ++++|..|.+.|+|+.|+.+|+++ +.+.+++|+.+|.+||. .++++..|.+ |+++.||+++.
T Consensus 115 ~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~--~alp~Lv~LL~~p~sg~~ 191 (584)
T 3l6x_A 115 KNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD--HALHALTDEVIIPHSGWE 191 (584)
T ss_dssp HHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH--HTHHHHHHHTHHHHHCCC
T ss_pred HHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh--ccHHHHHHHHhccccccc
Confidence 999764 588999999999999999999984 78899999999999986 4778888863 67999999872
Q ss_pred ----------CCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHc-CcHHHHHHHhhhc------ccchhhhhh
Q 021417 236 ----------EPICPTATEASFVVVYHMITSASAADKPIQKFVDM-GLVSLLLETLVDA------QRSLCEKPW 292 (312)
Q Consensus 236 ----------~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~-G~V~~LvelL~~~------~~~~~e~aL 292 (312)
+..++...+.|..+|.||+... +.+|..+++. |.|++|+.+|.+. +....|.++
T Consensus 192 ~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~---~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav 262 (584)
T 3l6x_A 192 REPNEDCKPRHIEWESVLTNTAGCLRNVSSER---SEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCV 262 (584)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTSSC---HHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhcCC---HHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHH
Confidence 1124688899999999999875 3469999985 7889999999742 334556555
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.69 E-value=4e-16 Score=153.30 Aligned_cols=192 Identities=13% Similarity=0.041 Sum_probs=158.9
Q ss_pred hhhhHHHHHHHHHHHhchhhhHHHHh-cCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCC-ChhHHHhccCCCC
Q 021417 106 TGGRDLVAKIKKWIKESERNKRCIVD-YGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPL-AGEALTYLGSASS 183 (312)
Q Consensus 106 ~~~~~al~~l~~lak~s~~nR~~l~~-aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~-~~e~k~~l~~~~~ 183 (312)
..+..|+..|..++..++.+|..+.. .|++|.|+.+|.+. +.++++.|..+|.+|+.. ++++|..|.+.|.
T Consensus 215 ~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-------~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~Ga 287 (458)
T 3nmz_A 215 TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-------SEDLQQVIASVLRNLSWRADVNSKKTLREVGS 287 (458)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCS-------CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCC-------CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence 44677999999999999889988865 58899999999754 357899999999999763 5778999989999
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCCh---HHHHHHHHHHHHhhc---C
Q 021417 184 MHCMVWFL-KSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICP---TATEASFVVVYHMIT---S 256 (312)
Q Consensus 184 l~~lv~~L-~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~---~a~~~Al~aL~~L~~---~ 256 (312)
++.|+.+| ++++.+.+++|+.+|.+|+...++++..|....|+++.|+++|+.+.+. ...+.|..+|.||+. .
T Consensus 288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~ 367 (458)
T 3nmz_A 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367 (458)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccC
Confidence 99999975 5678999999999999998745677888874459999999999876222 478999999999985 2
Q ss_pred CCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh-----cc-CCHHHHHHHhhcC
Q 021417 257 ASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VF-STDFAAVITGEER 307 (312)
Q Consensus 257 ~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL-----L~-~~~eGR~ai~~~~ 307 (312)
. +.|+..++++|++++|+++|.+.+..+.+.|. |+ ..++.+.+|.+.+
T Consensus 368 ~---~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G 421 (458)
T 3nmz_A 368 N---EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 421 (458)
T ss_dssp C---HHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHT
T ss_pred C---HHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCC
Confidence 2 37999999999999999999876655666655 66 5789999998764
No 11
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.68 E-value=1.1e-15 Score=135.75 Aligned_cols=187 Identities=13% Similarity=0.219 Sum_probs=157.8
Q ss_pred HHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 021417 89 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 168 (312)
Q Consensus 89 v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~ 168 (312)
+..+++-+.+ .++..+..|+..|..++..++.+|..+.+.|+++.|+.+|.+. +..+++.|+.+|.+|+
T Consensus 56 i~~L~~lL~~----~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~ 124 (252)
T 4db8_A 56 LPALVQLLSS----PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-------NEQILQEALWALSNIA 124 (252)
T ss_dssp HHHHHHGGGC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHhh
Confidence 3444555533 4566777899999999999999999999999999999999764 3578999999999996
Q ss_pred CCChhHH-HhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHH
Q 021417 169 PLAGEAL-TYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASF 247 (312)
Q Consensus 169 ~~~~e~k-~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al 247 (312)
. +.+++ ..+.+.|.++.++.+|++++.+.|.+|+.+|.+|+..++..+..+.+. |+++.|+++++++ ++...+.|+
T Consensus 125 ~-~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~~-~~~v~~~a~ 201 (252)
T 4db8_A 125 S-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSP-NEQILQEAL 201 (252)
T ss_dssp T-SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-TCHHHHHHGGGCS-SHHHHHHHH
T ss_pred c-CCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHC-CCHHHHHHHHCCC-CHHHHHHHH
Confidence 5 44555 677788999999999999999999999999999987666777777565 9999999999987 889999999
Q ss_pred HHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 248 VVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 248 ~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
.+|.+|+... +.++..+++.|+++.|+++|.+.+..+.+.|+
T Consensus 202 ~~L~~l~~~~---~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~ 243 (252)
T 4db8_A 202 WALSNIASGG---NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 243 (252)
T ss_dssp HHHHHHTTSC---HHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHH
T ss_pred HHHHHHhcCC---HHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHH
Confidence 9999999654 46888999999999999999877766777665
No 12
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.68 E-value=2.4e-15 Score=132.50 Aligned_cols=188 Identities=18% Similarity=0.247 Sum_probs=160.8
Q ss_pred HHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 021417 89 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 168 (312)
Q Consensus 89 v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~ 168 (312)
+..+++-+.+ +++..+..++..|..++..++.+|..+.+.|+++.|+.+|.+. +.++++.|+.+|.+|+
T Consensus 46 i~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~-------~~~v~~~a~~~L~~l~ 114 (252)
T 4hxt_A 46 VEVLVKLLTS----TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-------DSEVQKEAARALANIA 114 (252)
T ss_dssp HHHHHHHTTC----SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-------SHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC----CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHH
Confidence 4445555533 4566777899999999999899999999999999999999754 3578999999999997
Q ss_pred CCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHH
Q 021417 169 PLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFV 248 (312)
Q Consensus 169 ~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~ 248 (312)
..+++++..+.+.+.++.++.+|++++.+.|..|+.+|.+|+...+..+..+.+. |+++.|+.++.++ ++.....|+.
T Consensus 115 ~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~ll~~~-~~~v~~~a~~ 192 (252)
T 4hxt_A 115 SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDA-GGVEVLVKLLTST-DSEVQKEAAR 192 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHTTCS-CHHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-cCHHHHHHHHCCC-CHHHHHHHHH
Confidence 6678888888889999999999999999999999999999987667766677565 9999999999876 8899999999
Q ss_pred HHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 249 VVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 249 aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
+|.+++... +.++..+++.|+++.|+++|.+.+..+.+.|+
T Consensus 193 ~L~~l~~~~---~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 233 (252)
T 4hxt_A 193 ALANIASGP---TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQ 233 (252)
T ss_dssp HHHHHTTSB---HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHcCC---HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHH
Confidence 999999754 36888999999999999999877666777766
No 13
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.65 E-value=4.5e-16 Score=140.12 Aligned_cols=166 Identities=11% Similarity=0.042 Sum_probs=135.7
Q ss_pred CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Q 021417 134 AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSD 213 (312)
Q Consensus 134 ~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~ 213 (312)
.+|.|+.+|.+.+. ..+++..|...|.+|+..++++|..+.+.|.|+.+|.+|++++.+.|++|+.+|.+|+..+
T Consensus 9 ~i~~lV~lL~s~~~-----~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 9 TLERAVSMLEADHM-----LPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp CHHHHHHTCCSSCC-----CHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHhCCCCc-----hHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 47899999976531 1367888888888887667888998888999999999999999999999999999998766
Q ss_pred hHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhh---c-------
Q 021417 214 HRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVD---A------- 283 (312)
Q Consensus 214 ~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~---~------- 283 (312)
++++..|.+. |+|+.||++|+...++...+.|..+|+||+..+ .||..+++. ++++|+++|.. +
T Consensus 84 ~~nk~~I~~~-GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~----~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~ 157 (233)
T 3tt9_A 84 NDNKLEVAEL-NGVPRLLQVLKQTRDLETKKQITGLLWNLSSND----KLKNLMITE-ALLTLTENIIIPFSGWPEGDYP 157 (233)
T ss_dssp HHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG----GGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCC
T ss_pred HHHHHHHHHc-CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh----hhHHHHHhc-cHHHHHHHHhccccCCcccccc
Confidence 8899999887 999999999985337889999999999999885 899999985 69999998741 1
Q ss_pred ------ccchhhhhh-----ccC-CHHHHHHHhhcCCcc
Q 021417 284 ------QRSLCEKPW-----VFS-TDFAAVITGEERPTI 310 (312)
Q Consensus 284 ------~~~~~e~aL-----L~~-~~eGR~ai~~~~~~~ 310 (312)
+..+.+.+. |+. .+++|.+|++++|.|
T Consensus 158 ~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli 196 (233)
T 3tt9_A 158 KANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLI 196 (233)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHH
T ss_pred cccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcH
Confidence 112333333 655 679999999988754
No 14
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.63 E-value=1.2e-14 Score=135.19 Aligned_cols=193 Identities=8% Similarity=0.103 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHhccc--------CCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHH-HhhcccccccchhHHHH
Q 021417 87 VEVLEINSKITAACK--------SEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAA-AFESFSKTCLDEHVSVL 157 (312)
Q Consensus 87 ~~v~~ll~~l~~~~~--------~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~-lL~s~~~~~~~~~~~v~ 157 (312)
....+.+.-|.+... .++.+.+..|+..|..++...+ |...|++.|++|.|+. +|.+. +..++
T Consensus 28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~-------~~~vr 99 (296)
T 1xqr_A 28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAG-------AAGLR 99 (296)
T ss_dssp HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCS-------SHHHH
T ss_pred HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCC-------CHHHH
Confidence 445566666654210 1334566779999999998665 8888999999999999 99764 35799
Q ss_pred HHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcC
Q 021417 158 EEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSG-DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKE 236 (312)
Q Consensus 158 e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~ 236 (312)
+.|+.+|.+++..+++++..+.+.|+++.++.+|+++ +.+.|.+|+.+|-+|+...+.....+... |+++.|+.+|++
T Consensus 100 ~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~-ggi~~L~~lL~~ 178 (296)
T 1xqr_A 100 WRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRL-DGFSVLMRAMQQ 178 (296)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHC-CCHHHHHHHHcC
Confidence 9999999999776788888888889999999999975 78999999999999986555555556465 899999999998
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 237 PICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 237 ~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
+ ++...+.|..+|.+|+... .+++..+++.|++++|+++|...+..+.+.++
T Consensus 179 ~-d~~v~~~A~~aLs~L~~~~---~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al 230 (296)
T 1xqr_A 179 Q-VQKLKVKSAFLLQNLLVGH---PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVL 230 (296)
T ss_dssp S-CHHHHHHHHHHHHHHHHHC---GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHhCC---hHHHHHHHHcCCHHHHHHHHcCCChhHHHHHH
Confidence 7 8899999999999998754 37899999999999999999877777888887
No 15
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.62 E-value=6.5e-15 Score=145.80 Aligned_cols=206 Identities=11% Similarity=0.101 Sum_probs=161.3
Q ss_pred HHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhc-hhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHh
Q 021417 88 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKES-ERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTL 166 (312)
Q Consensus 88 ~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s-~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~ 166 (312)
.+.++|+.+.+ +|++.+.+|+.++|++.... ......++++|++|.|+.+|...+ +..++.+|..+|.+
T Consensus 58 ~i~~~v~~l~s----~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~------~~~lq~~Aa~aL~n 127 (510)
T 3ul1_B 58 SVEDIVKGINS----NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD------CSPIQFESAWALTN 127 (510)
T ss_dssp CHHHHHHHHTS----SCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTT------CHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcC----CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCC------CHHHHHHHHHHHHH
Confidence 37788999865 68899999999999876533 223467899999999999997542 36789999999999
Q ss_pred cCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCC----ChHH
Q 021417 167 LFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPI----CPTA 242 (312)
Q Consensus 167 L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~----~~~a 242 (312)
++..+.+++..+.+.|+++.++.+|++++.+.|++|+.+|.+|+..++.++..+.+. |+++.|+.++.... ....
T Consensus 128 ias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~-G~i~~Ll~lL~~~~~~~~~~~~ 206 (510)
T 3ul1_B 128 IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGY 206 (510)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHHTCSSCGGGSCHHH
T ss_pred HhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHc-CChHHHHHHHHhccchhhhHHH
Confidence 988788888888999999999999999999999999999999987778888888565 99999999998642 2346
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHH-HHcCcHHHHHHHhhhcccchhhhhh-----ccCCHHHHHHHhhcCC
Q 021417 243 TEASFVVVYHMITSASAADKPIQKF-VDMGLVSLLLETLVDAQRSLCEKPW-----VFSTDFAAVITGEERP 308 (312)
Q Consensus 243 ~~~Al~aL~~L~~~~~~~~~Nr~~~-V~~G~V~~LvelL~~~~~~~~e~aL-----L~~~~eGR~ai~~~~~ 308 (312)
.+.+..+|.++|... .+...+ ...|+++.|+++|.+.+..+.+.++ |+...+.+..+....+
T Consensus 207 ~~~a~~~L~nl~~~~----~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g 274 (510)
T 3ul1_B 207 LRNLTWTLSNLCRNK----NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKG 274 (510)
T ss_dssp HHHHHHHHHHHHCCC----SSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhcc----cchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcc
Confidence 778999999999875 333333 3468999999999876655555555 6655444444333333
No 16
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.58 E-value=5.4e-14 Score=146.35 Aligned_cols=201 Identities=11% Similarity=0.067 Sum_probs=159.2
Q ss_pred HHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhch-----------------------------hhh---HHHHhcCCHH
Q 021417 89 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESE-----------------------------RNK---RCIVDYGAVS 136 (312)
Q Consensus 89 v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~-----------------------------~nR---~~l~~aG~v~ 136 (312)
+..|+.-+++ +|...+..|+.-|.+++...+ .++ +.+.++|++|
T Consensus 423 Ip~LV~LL~s----~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp 498 (810)
T 3now_A 423 IHALMDLARG----GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT 498 (810)
T ss_dssp HHHHHHHHHT----TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHhCC----CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence 3345544442 566777889999999998542 233 5788999999
Q ss_pred HHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHH
Q 021417 137 VLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRR 216 (312)
Q Consensus 137 ~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~ 216 (312)
.|+.+|.+. +..++++|+.+|.+++. +.+++..+.+.|++++|+.+|++|+...|.+|+.+|.+|+...+.
T Consensus 499 ~LV~LL~s~-------s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p- 569 (810)
T 3now_A 499 ALCALAKTE-------SHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP- 569 (810)
T ss_dssp HHHHHHTCC-------CHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH-
T ss_pred HHHHHHcCC-------CHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh-
Confidence 999999865 35789999999999964 777999998999999999999999999999999999999744221
Q ss_pred HHHhh--hhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh--
Q 021417 217 VNMFL--EIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-- 292 (312)
Q Consensus 217 ~~~Ig--~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL-- 292 (312)
...++ ...|+++.|+.+|..+.+......|+.+|.||+... +.++..+++.|+++.|+++|.+.+..+.+.|+
T Consensus 570 ~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~---d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~ 646 (810)
T 3now_A 570 EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMN---ESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQC 646 (810)
T ss_dssp HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC---HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 12221 124799999999985534445568999999999875 47999999999999999999876666666666
Q ss_pred ---ccCCHHHHHHHhh
Q 021417 293 ---VFSTDFAAVITGE 305 (312)
Q Consensus 293 ---L~~~~eGR~ai~~ 305 (312)
|+.+++.+..+..
T Consensus 647 L~NLa~~~~~~~~~v~ 662 (810)
T 3now_A 647 LCNLVMSEDVIKMFEG 662 (810)
T ss_dssp HHHHTTSHHHHHHHHS
T ss_pred HHHHhCChHHHHHHHh
Confidence 8888899988884
No 17
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.56 E-value=3.6e-14 Score=138.75 Aligned_cols=162 Identities=7% Similarity=-0.002 Sum_probs=136.4
Q ss_pred CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Q 021417 134 AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSD 213 (312)
Q Consensus 134 ~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~ 213 (312)
.+|.|+.+|.+.+ .++++.|+.+|.+|+..++++|..+.+.|.++.++.+|++++.+.+..|+.+|.+|+..+
T Consensus 3 ~l~~lv~~L~s~~-------~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 3 TIPKAVQYLSSQD-------EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp CHHHHHHHHHSSC-------THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHCCCC-------HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 4789999998652 468999999999997656677877888999999999999999999999999999998766
Q ss_pred hHHHHHhhhhhchHHHHHHhhc-CCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhh--------cc
Q 021417 214 HRRVNMFLEIEGAIESLYTLIK-EPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVD--------AQ 284 (312)
Q Consensus 214 ~~~~~~Ig~~~g~i~~LV~ll~-~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~--------~~ 284 (312)
++++..|.+. |+++.||++|+ ++ ++...+.|..+|+||+..+ .||..+++ |++++|+++|.. ..
T Consensus 76 ~~~k~~i~~~-G~i~~Lv~lL~~~~-~~~~~~~a~~aL~nLa~~~----~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~ 148 (457)
T 1xm9_A 76 TTNKLETRRQ-NGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTD----ELKEELIA-DALPVLADRVIIPFSGWCDGNS 148 (457)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSS----STHHHHHH-HHHHHHHHHTTHHHHTCC----
T ss_pred HHHHHHHHHc-CCHHHHHHHHhhCC-CHHHHHHHHHHHHHHhcCH----HhHHHHHh-ccHHHHHHHHhccccccccCcc
Confidence 8889989777 99999999998 55 8899999999999999885 79999999 999999999931 11
Q ss_pred c--------c---hhhhhh--ccCCHHHHHHHhhcCCc
Q 021417 285 R--------S---LCEKPW--VFSTDFAAVITGEERPT 309 (312)
Q Consensus 285 ~--------~---~~e~aL--L~~~~eGR~ai~~~~~~ 309 (312)
. . .+-.+| ||..++.|..+.+.+|+
T Consensus 149 ~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~ 186 (457)
T 1xm9_A 149 NMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGL 186 (457)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTH
T ss_pred chhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCC
Confidence 1 1 333444 88889999999987444
No 18
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.56 E-value=8.3e-14 Score=120.34 Aligned_cols=165 Identities=15% Similarity=0.238 Sum_probs=137.8
Q ss_pred hcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 021417 131 DYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVI 210 (312)
Q Consensus 131 ~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls 210 (312)
..|..+.|+.+|.+. +.++++.|+.+|.+|+..+++++..+.+.|.++.++.+|++++.+.|..|+.+|.+|+
T Consensus 10 ~~~~~~~l~~LL~s~-------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~ 82 (210)
T 4db6_A 10 HGSELPQMVQQLNSP-------DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 82 (210)
T ss_dssp ---CHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHhcCC-------CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 347899999999765 3578999999999997667788888888899999999999999999999999999998
Q ss_pred ccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhh
Q 021417 211 SSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEK 290 (312)
Q Consensus 211 ~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~ 290 (312)
..++.++..+.+. |+++.|+.+++++ ++..++.|..+|.||+... +.++..+++.|+++.|+++|.+.+..+.+.
T Consensus 83 ~~~~~~~~~i~~~-g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 157 (210)
T 4db6_A 83 SGGNEQIQAVIDA-GALPALVQLLSSP-NEQILQEALWALSNIASGG---NEQIQAVIDAGALPALVQLLSSPNEQILQE 157 (210)
T ss_dssp TSCHHHHHHHHHT-TCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSC---HHHHHHHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred cCCcHHHHHHHHC-CCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCC---HHHHHHHHHcCcHHHHHHHHcCCCHHHHHH
Confidence 6667777778676 9999999999887 8899999999999999754 367788999999999999998766667776
Q ss_pred hh-----ccCC-HHHHHHHhhcC
Q 021417 291 PW-----VFST-DFAAVITGEER 307 (312)
Q Consensus 291 aL-----L~~~-~eGR~ai~~~~ 307 (312)
++ +|.. ++.+..+.+.+
T Consensus 158 a~~aL~~l~~~~~~~~~~~~~~g 180 (210)
T 4db6_A 158 ALWALSNIASGGNEQKQAVKEAG 180 (210)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCcHHHHHHHHCC
Confidence 66 6655 77777776653
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.56 E-value=8.3e-14 Score=137.15 Aligned_cols=200 Identities=11% Similarity=0.054 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhch-hhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 021417 87 VEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESE-RNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLT 165 (312)
Q Consensus 87 ~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~-~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~ 165 (312)
..+..+++.+.+ +|+..+..|+..|+.++.... .++..+.+.|++|.|+.+|.+.+ +..+++.|+.+|.
T Consensus 74 ~~l~~lv~~L~s----~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~------~~~v~~~A~~~L~ 143 (528)
T 4b8j_A 74 ESLPAMIGGVYS----DDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED------FPQLQFEAAWALT 143 (528)
T ss_dssp -CHHHHHHHHTS----SCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTT------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC----CCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCC------CHHHHHHHHHHHH
Confidence 346778888853 567788889999999987654 67888999999999999997542 2578999999999
Q ss_pred hcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHH
Q 021417 166 LLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEA 245 (312)
Q Consensus 166 ~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~ 245 (312)
+++..+.+++..+...|.++.++.+|++++.+.|.+|+.+|.+|+..++.++..+... |+++.|+.++.+..++...+.
T Consensus 144 ~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~-g~l~~Ll~lL~~~~~~~v~~~ 222 (528)
T 4b8j_A 144 NIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLAN-GALLPLLAQLNEHTKLSMLRN 222 (528)
T ss_dssp HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHT-TCHHHHHHTCCTTCCHHHHHH
T ss_pred HHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHC-CcHHHHHHHHhcCCCHHHHHH
Confidence 9987667888888888999999999999999999999999999987767777777565 999999999965558899999
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh-----ccCCHHHHH
Q 021417 246 SFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VFSTDFAAV 301 (312)
Q Consensus 246 Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL-----L~~~~eGR~ 301 (312)
|..+|.+||... .+....+..|+++.|+++|.+.+..+.+.++ ++...+.+.
T Consensus 223 a~~~L~~L~~~~----~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 279 (528)
T 4b8j_A 223 ATWTLSNFCRGK----PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKI 279 (528)
T ss_dssp HHHHHHHHHCSS----SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHH
T ss_pred HHHHHHHHHcCC----CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999874 3455566799999999999876666666665 666555543
No 20
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.54 E-value=3.9e-13 Score=133.35 Aligned_cols=180 Identities=11% Similarity=0.140 Sum_probs=154.0
Q ss_pred CCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCC
Q 021417 102 SEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSA 181 (312)
Q Consensus 102 ~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~ 181 (312)
.+++..+..|+..|..++..++.++..+...|++|.|+.+|.+. +..+++.|+.+|.+++..+++.+..+.+.
T Consensus 262 ~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-------~~~v~~~a~~aL~nl~~~~~~~~~~i~~~ 334 (529)
T 3tpo_A 262 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-------ELPIVTPALRAIGNIVTGTDEQTQKVIDA 334 (529)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-------ChhHHHHHHHHHHHHHccchHHHHHHhhc
Confidence 35666777899999999998888888889999999999999765 35789999999999977777888888889
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCc
Q 021417 182 SSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAAD 261 (312)
Q Consensus 182 ~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~ 261 (312)
|.++.++.+|++++.+.|.+|+.+|.+|+..++.....+.+. |+++.|+.+++++ ++...+.|..+|.|++... ..
T Consensus 335 g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~-g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~--~~ 410 (529)
T 3tpo_A 335 GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH-GLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGG--TV 410 (529)
T ss_dssp TGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHS--CH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhc-CcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCC--CH
Confidence 999999999999999999999999999987667777777565 9999999999988 8899999999999998642 02
Q ss_pred chHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 262 KPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 262 ~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
+++..+++.|++++|+++|...+..+...+|
T Consensus 411 ~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L 441 (529)
T 3tpo_A 411 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 441 (529)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHhcCCCHHHHHHHH
Confidence 5788999999999999999876666666555
No 21
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.53 E-value=8.6e-14 Score=135.84 Aligned_cols=189 Identities=17% Similarity=0.119 Sum_probs=157.2
Q ss_pred HHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 021417 88 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 167 (312)
Q Consensus 88 ~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L 167 (312)
.+..+++.+... .|+..+..|+..|+.+++..+ +|..+.+.|++|.|+.+|.+. +..++..|+.+|.+|
T Consensus 60 ~i~~Lv~~L~~~---~~~~~~~~a~~~L~~ls~~~~-~~~~i~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l 128 (529)
T 1jdh_A 60 MVSAIVRTMQNT---NDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGSP-------VDSVLFYAITTLHNL 128 (529)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHHHHHTTSHH-HHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcC---CCHHHHHHHHHHHHHHHcCch-hHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHH
Confidence 456667766542 356677889999999998765 999999999999999999764 357899999999999
Q ss_pred CCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHH
Q 021417 168 FPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASF 247 (312)
Q Consensus 168 ~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al 247 (312)
+..+++.+..+.+.|.++.++.+|++++.+.+..++.+|..++..+++++..+.+. |+++.|+++++++........+.
T Consensus 129 ~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~-~~i~~L~~ll~~~~~~~~~~~a~ 207 (529)
T 1jdh_A 129 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS-GGPQALVNIMRTYTYEKLLWTTS 207 (529)
T ss_dssp HHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHHHCCCHHHHHHHH
T ss_pred hcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC-CCHHHHHHHHHhCChHHHHHHHH
Confidence 76555677778788999999999999999999999999999987667888888776 99999999999875666777889
Q ss_pred HHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 248 VVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 248 ~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
.+|.+|+..+ .|+..+++.|+++.|+++|.+.+..+.+.++
T Consensus 208 ~~L~~l~~~~----~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~ 248 (529)
T 1jdh_A 208 RVLKVLSVCS----SNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 248 (529)
T ss_dssp HHHHHHTTST----THHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred HHHHHHhcCc----ccHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence 9999999875 8999999999999999999765544444443
No 22
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.53 E-value=7.8e-14 Score=140.60 Aligned_cols=167 Identities=13% Similarity=0.031 Sum_probs=138.7
Q ss_pred hcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Q 021417 131 DYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVI 210 (312)
Q Consensus 131 ~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls 210 (312)
..+.+|.|+.+|.+. +.+++++|...|.+|+..++++|..|.+.|.|+.||.+|++++.+.+++|+.+|.+|+
T Consensus 46 ~~~~i~~LV~~L~s~-------~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa 118 (584)
T 3l6x_A 46 RQPELPEVIAMLGFR-------LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNIS 118 (584)
T ss_dssp CCCCHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHCCC-------CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 347899999999765 3578999999999997778899999999999999999999999999999999999998
Q ss_pred cc-chHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhh---c---
Q 021417 211 SS-DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVD---A--- 283 (312)
Q Consensus 211 ~~-~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~---~--- 283 (312)
.. +++++..|.+. |+|+.||++|+.+.++...+.|..+|++|+..+ .|+..+++ |++++|+++|.. +
T Consensus 119 ~~~~~~nk~~I~~~-GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~----~~k~~I~~-~alp~Lv~LL~~p~sg~~~ 192 (584)
T 3l6x_A 119 FGRDQDNKIAIKNC-DGVPALVRLLRKARDMDLTEVITGTLWNLSSHD----SIKMEIVD-HALHALTDEVIIPHSGWER 192 (584)
T ss_dssp SSSCHHHHHHHHHT-THHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG----GGHHHHHH-HTHHHHHHHTHHHHHCCC-
T ss_pred ccCCHHHHHHHHHc-CCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc----hhhHHHHh-ccHHHHHHHHhcccccccc
Confidence 63 47889999787 999999999997547788899999999999875 89999996 569999999831 0
Q ss_pred ------------ccchhhhhh-----ccCC-HHHHHHHhhcCCcc
Q 021417 284 ------------QRSLCEKPW-----VFST-DFAAVITGEERPTI 310 (312)
Q Consensus 284 ------------~~~~~e~aL-----L~~~-~eGR~ai~~~~~~~ 310 (312)
+..+.+.+. |+.+ +++|.+|.+.+|.|
T Consensus 193 ~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli 237 (584)
T 3l6x_A 193 EPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLV 237 (584)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcH
Confidence 113333333 6654 57899999987765
No 23
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.51 E-value=1.7e-13 Score=138.97 Aligned_cols=189 Identities=17% Similarity=0.119 Sum_probs=157.9
Q ss_pred HHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 021417 88 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 167 (312)
Q Consensus 88 ~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L 167 (312)
-+..+++.+... .++..+..|+..|+.+++..+ +|..+.+.|+++.|+.+|.+. +..++..|+.+|.+|
T Consensus 57 ~i~~Lv~~L~~~---~~~~~~~~A~~~L~~Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~-------~~~v~~~A~~aL~nL 125 (644)
T 2z6h_A 57 MVSAIVRTMQNT---NDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGSP-------VDSVLFYAITTLHNL 125 (644)
T ss_dssp HHHHHHHHHHSC---CCHHHHHHHHHHHHHHTTSHH-HHHHHHTTTHHHHHHHHTTCS-------SHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcChh-hHHHHHHcCCHHHHHHHHhCC-------CHHHHHHHHHHHHHH
Confidence 466677777542 356777889999999998766 999999999999999999765 357899999999999
Q ss_pred CCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHH
Q 021417 168 FPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASF 247 (312)
Q Consensus 168 ~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al 247 (312)
+..+++.+..+.+.|.++.++.+|++++.+.+..++.+|..|+..+++++..+.+. |+++.|++++++.........+.
T Consensus 126 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~-g~v~~Lv~lL~~~~~~~~~~~a~ 204 (644)
T 2z6h_A 126 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS-GGPQALVNIMRTYTYEKLLWTTS 204 (644)
T ss_dssp HHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHHHTTCCCHHHHHHHH
T ss_pred HhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHc-CChHHHHHHHHcCChHHHHHHHH
Confidence 76455667777788999999999999998888888999999986567788888776 99999999999875667888999
Q ss_pred HHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 248 VVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 248 ~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
.+|.+|+..+ .||..+++.|+++.|+++|.+.+..+.+.++
T Consensus 205 ~~L~nLs~~~----~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~ 245 (644)
T 2z6h_A 205 RVLKVLSVCS----SNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 245 (644)
T ss_dssp HHHHHHTTCT----THHHHHHHTTHHHHHHTTTTCSCHHHHHHHH
T ss_pred HHHHHHhcCc----ccHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence 9999999876 8999999999999999999765544555444
No 24
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.51 E-value=4.3e-13 Score=133.08 Aligned_cols=204 Identities=13% Similarity=0.133 Sum_probs=160.2
Q ss_pred HHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 021417 89 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 168 (312)
Q Consensus 89 v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~ 168 (312)
+..+++-+... .++..+.+|+..|..++..++.++..++++|++|.|+.+|.+. +.++++.|+.+|.+|+
T Consensus 121 ip~Lv~lL~~~---~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~-------~~~v~e~A~~aL~nLa 190 (529)
T 3tpo_A 121 IPKFVSFLGKT---DCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-------HAHISEQAVWALGNIA 190 (529)
T ss_dssp HHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHh
Confidence 44566666432 3466778899999999999999999999999999999999765 3578999999999998
Q ss_pred CCChhHHHhccCCCCHHHHHHHHhcCC-----HHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHH
Q 021417 169 PLAGEALTYLGSASSMHCMVWFLKSGD-----LSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTAT 243 (312)
Q Consensus 169 ~~~~e~k~~l~~~~~l~~lv~~L~~gs-----~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~ 243 (312)
..+++++..+.+.|.++.++.+|...+ .....+++..|..++.......... ...|+++.|++++.++ ++...
T Consensus 191 ~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~-~~~~~lp~L~~LL~~~-~~~v~ 268 (529)
T 3tpo_A 191 GAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD-AVEQILPTLVRLLHHN-DPEVL 268 (529)
T ss_dssp TTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHH-HHHHHHHHHHHHTTSS-CHHHH
T ss_pred ccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHH-HHhhHHHHHHHHhcCC-cHHHH
Confidence 767888999989999999999998764 3457789999999975433222222 3458999999999887 88999
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh-----c-cCCHHHHHHHhhcC
Q 021417 244 EASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----V-FSTDFAAVITGEER 307 (312)
Q Consensus 244 ~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL-----L-~~~~eGR~ai~~~~ 307 (312)
.+|..+|.+++... ..++..+++.|+++.|+++|.+.+..+.+.++ + +..++.+..+.+.+
T Consensus 269 ~~a~~aL~~l~~~~---~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g 335 (529)
T 3tpo_A 269 ADSCWAISYLTDGP---NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG 335 (529)
T ss_dssp HHHHHHHHHHHSSC---HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhh---hhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcc
Confidence 99999999999875 24555667899999999999876655665555 4 44566777776654
No 25
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.50 E-value=8.1e-16 Score=117.26 Aligned_cols=62 Identities=13% Similarity=-0.120 Sum_probs=57.8
Q ss_pred cchhhhhhHHHhhhhccc-chhhHHhhHHH-HhhCCCcccccccccCCCCccccchhh--hhhhch
Q 021417 6 HVRLINLAKWLVESAWVA-LRLFQERCEEE-LLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~er~~~e-~~~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc~ 67 (312)
+.|.||++..+|+|||++ .+++|||..|+ |+.++.|||+|+++|...+|+||+.|| |+.|+.
T Consensus 13 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~ 78 (85)
T 2kr4_A 13 DEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMR 78 (85)
T ss_dssp TTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred hheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHH
Confidence 479999999999999977 89999999877 677899999999999988999999999 999998
No 26
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.50 E-value=1.6e-15 Score=119.16 Aligned_cols=65 Identities=12% Similarity=-0.079 Sum_probs=59.7
Q ss_pred cchhhhhhHHHhhhhccc-chhhHHhhHHH-HhhCCCcccccccccCCCCccccchhh--hhhhchhhhhcc
Q 021417 6 HVRLINLAKWLVESAWVA-LRLFQERCEEE-LLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKFNLQREK 73 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~er~~~e-~~~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc~~~~~n~ 73 (312)
+.|.||++..+|+|||++ .+++|+|..|+ |+.++.|||+|+++|...+|+||+.|| |+.|+. +|.
T Consensus 28 ~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~---~~~ 96 (100)
T 2kre_A 28 DEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMR---EKQ 96 (100)
T ss_dssp TTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHH---TTT
T ss_pred HhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHHHHHHHHHHH---Hhh
Confidence 468999999999999977 89999999887 677899999999999999999999999 999998 654
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.49 E-value=6.9e-13 Score=129.40 Aligned_cols=203 Identities=12% Similarity=0.067 Sum_probs=163.1
Q ss_pred HHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHh-cCCHHHHHHHhhcccccccchhHHHHHHHHHHHHh
Q 021417 88 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVD-YGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTL 166 (312)
Q Consensus 88 ~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~-aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~ 166 (312)
.+..+++-+.+ +|+..+..|+..|..++...+ +|..+.. .|+++.|+.+|.+.. +.+++..|+.+|..
T Consensus 18 ~i~~Lv~lL~~----~~~~v~~~A~~~L~~l~~~~~-~~~~~~~~~~~i~~Lv~~L~~~~------~~~~~~~a~~~L~~ 86 (529)
T 1jdh_A 18 AIPELTKLLND----EDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTN------DVETARCTAGTLHN 86 (529)
T ss_dssp HHHHHHHHHTC----SCHHHHHHHHHHHHHHHTSHH-HHHHHHTCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHH
T ss_pred hHHHHHHHhCC----CCHHHHHHHHHHHHHHHcCCc-cHHHHHhCcchHHHHHHHHhcCC------CHHHHHHHHHHHHH
Confidence 45556665542 567778889999999998665 6766655 499999999997542 25689999999999
Q ss_pred cCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHH
Q 021417 167 LFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEAS 246 (312)
Q Consensus 167 L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~A 246 (312)
|+. +++++..+.+.|.++.++.+|++++.+.+.+|+.+|.+|+..++..+..+.+. |+++.|+++++++ +++....+
T Consensus 87 ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~ll~~~-~~~~~~~~ 163 (529)
T 1jdh_A 87 LSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLNKT-NVKFLAIT 163 (529)
T ss_dssp HTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHH-THHHHHHHGGGCC-CHHHHHHH
T ss_pred HHc-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHc-CCHHHHHHHHhcC-CHHHHHHH
Confidence 954 56688888888999999999999999999999999999987655667777565 9999999999987 78888889
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccc-hh---hhhh--ccCCHHHHHHHhhcC
Q 021417 247 FVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRS-LC---EKPW--VFSTDFAAVITGEER 307 (312)
Q Consensus 247 l~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~-~~---e~aL--L~~~~eGR~ai~~~~ 307 (312)
..+|.+++... ++++..+++.|+++.|+++|.+.+.. .. -.+| |+.+++.|..+.+.+
T Consensus 164 ~~~L~~la~~~---~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g 227 (529)
T 1jdh_A 164 TDCLQILAYGN---QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 227 (529)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTT
T ss_pred HHHHHHHHhCC---HHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCC
Confidence 99999998753 47999999999999999999865432 22 2233 888888998887654
No 28
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.49 E-value=5.5e-13 Score=131.91 Aligned_cols=180 Identities=10% Similarity=0.136 Sum_probs=153.2
Q ss_pred CCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCC
Q 021417 102 SEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSA 181 (312)
Q Consensus 102 ~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~ 181 (312)
..+++.+..|+..|..++..++.+...+.+.|+++.|+.+|.+. +..+++.|+.+|.+++..+++.+..+.+.
T Consensus 243 ~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~v~~~al~aL~nl~~~~~~~~~~i~~~ 315 (510)
T 3ul1_B 243 HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-------ELPIVTPALRAIGNIVTGTDEQTQKVIDA 315 (510)
T ss_dssp CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-------ChhhhhHHHHHHHHhhcCCHHHHHHHhhc
Confidence 35666677899999999998887777888999999999999765 35789999999999977777888888889
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCc
Q 021417 182 SSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAAD 261 (312)
Q Consensus 182 ~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~ 261 (312)
|.++.++.+|++++.+.|..|+.+|.+|+..++..+..+.+. |+++.|+.+++++ ++..++.|..+|.|++... ..
T Consensus 316 g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~-g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~--~~ 391 (510)
T 3ul1_B 316 GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNH-GLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGG--TV 391 (510)
T ss_dssp TGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHC--CH
T ss_pred cchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhc-CCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccC--CH
Confidence 999999999999999999999999999987667777777566 9999999999988 8899999999999998632 02
Q ss_pred chHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 262 KPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 262 ~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
+++..+++.|++++|+++|...+..+...+|
T Consensus 392 ~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L 422 (510)
T 3ul1_B 392 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVIL 422 (510)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHhcCCCHHHHHHHH
Confidence 5788999999999999999877766666666
No 29
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.47 E-value=3.6e-15 Score=116.70 Aligned_cols=62 Identities=16% Similarity=0.041 Sum_probs=57.2
Q ss_pred cchhhhhhHHHhhhhccc-ch-hhHHhhHHH-HhhCCCcccccccccCCCCccccchhh--hhhhch
Q 021417 6 HVRLINLAKWLVESAWVA-LR-LFQERCEEE-LLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~-~~~er~~~e-~~~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc~ 67 (312)
+-|+||++..+|+|||++ .+ ++|||..|+ |+..+.|||+|+++|...+|+||+.|| |+.|+.
T Consensus 21 ~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 87 (98)
T 1wgm_A 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLA 87 (98)
T ss_dssp TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHH
T ss_pred HhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHH
Confidence 468999999999999977 67 999999877 666799999999999999999999999 999998
No 30
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.47 E-value=1.2e-12 Score=132.72 Aligned_cols=203 Identities=12% Similarity=0.061 Sum_probs=164.3
Q ss_pred HHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhc-CCHHHHHHHhhcccccccchhHHHHHHHHHHHHh
Q 021417 88 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDY-GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTL 166 (312)
Q Consensus 88 ~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~a-G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~ 166 (312)
.+..++.-+.+ +++..+..|+..|..++.+.+ +|..+... |+++.|+.+|.+.. +.+++..|+.+|..
T Consensus 15 ~i~~Lv~lL~~----~~~~vr~~A~~~L~~La~~~~-~~~~i~~~~~~i~~Lv~~L~~~~------~~~~~~~A~~~L~~ 83 (644)
T 2z6h_A 15 AIPELTKLLND----EDQVVVNKAAVMVHQLSKKEA-SRHAIMRSPQMVSAIVRTMQNTN------DVETARCTAGTLHN 83 (644)
T ss_dssp THHHHHHHHTC----SCHHHHHHHHHHHHHHHTSTT-HHHHHTTCHHHHHHHHHHHHSCC------CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcC----CCHHHHHHHHHHHHHHHCCCh-hHHHHHhccChHHHHHHHHhcCC------CHHHHHHHHHHHHH
Confidence 35556665542 566777889999999999775 77777665 99999999997542 35789999999999
Q ss_pred cCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHH
Q 021417 167 LFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEAS 246 (312)
Q Consensus 167 L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~A 246 (312)
|+. +.+++..+.+.+.++.++.+|++++...|.+|+.+|.+|+...+..+..+.+. |+++.|+++|+++ +++....+
T Consensus 84 Ls~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~-g~i~~Lv~lL~~~-~~~~~~~a 160 (644)
T 2z6h_A 84 LSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLNKT-NVKFLAIT 160 (644)
T ss_dssp HTT-SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHT-THHHHHHHGGGCC-CHHHHHHH
T ss_pred Hhc-ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHC-CChHHHHHHHCcC-CHHHHHHH
Confidence 854 56688888888999999999999999999999999999987655666677565 9999999999987 77888888
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhccc-chhh---hhh--ccCCHHHHHHHhhcC
Q 021417 247 FVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQR-SLCE---KPW--VFSTDFAAVITGEER 307 (312)
Q Consensus 247 l~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~-~~~e---~aL--L~~~~eGR~ai~~~~ 307 (312)
+.+|.+|+... ++|+..+++.|+++.|+++|.+.+. ...+ .+| ||.+++.|..+.+.+
T Consensus 161 ~~~L~~La~~~---~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g 224 (644)
T 2z6h_A 161 TDCLQILAYGN---QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 224 (644)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCC
Confidence 89999999743 4799999999999999999976532 2223 333 888999999988764
No 31
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.47 E-value=2e-12 Score=127.63 Aligned_cols=203 Identities=10% Similarity=0.099 Sum_probs=162.9
Q ss_pred HHHHHHHHHhcccCCCchhhhHHHHHHHHHHHh-chhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 021417 89 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKE-SERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 167 (312)
Q Consensus 89 v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~-s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L 167 (312)
+..++..+.+ +|+..+..|+..|+.+... +..++..+.+.|++|.|+.+|.+.. +..++..|+.+|.++
T Consensus 89 i~~lv~~L~s----~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~------~~~v~~~A~~~L~~l 158 (530)
T 1wa5_B 89 LPQMTQQLNS----DDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ------PEMLQLEAAWALTNI 158 (530)
T ss_dssp HHHHHHHHSC----SSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC----CCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCC------CHHHHHHHHHHHHHH
Confidence 5666777743 5677788899999999654 3456778889999999999997541 357899999999999
Q ss_pred CCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHH
Q 021417 168 FPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASF 247 (312)
Q Consensus 168 ~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al 247 (312)
+..+.+.+..+...+.++.++.+|++++.+.|.+|+.+|.+|+..++.++..+... |+++.|+.++.+. ++...+.|+
T Consensus 159 ~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~~-~~~v~~~a~ 236 (530)
T 1wa5_B 159 ASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQC-NAMEPILGLFNSN-KPSLIRTAT 236 (530)
T ss_dssp TTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHGGGSC-CHHHHHHHH
T ss_pred hCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHc-CcHHHHHHHhccC-CHHHHHHHH
Confidence 77667777777788999999999999999999999999999987767777777565 9999999999885 888999999
Q ss_pred HHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh-----ccC-CHHHHHHHhhc
Q 021417 248 VVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VFS-TDFAAVITGEE 306 (312)
Q Consensus 248 ~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL-----L~~-~~eGR~ai~~~ 306 (312)
.+|.+||... ..+....+..|+++.|+++|.+.+..+...++ |+. ..+.+..+.+.
T Consensus 237 ~~L~~L~~~~---~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~ 298 (530)
T 1wa5_B 237 WTLSNLCRGK---KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDV 298 (530)
T ss_dssp HHHHHHHCCS---SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred HHHHHHhCCC---CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhc
Confidence 9999999763 13455667789999999999876655665555 554 35666666653
No 32
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.45 E-value=2.4e-12 Score=126.69 Aligned_cols=202 Identities=14% Similarity=0.112 Sum_probs=160.0
Q ss_pred HHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 021417 89 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 168 (312)
Q Consensus 89 v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~ 168 (312)
+..+++-+... .++..+..|+..|..++..++.++..+.+.|++|.|+.+|.+. +..+++.|+.+|.+|+
T Consensus 119 v~~Lv~lL~~~---~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-------~~~v~~~a~~aL~~l~ 188 (528)
T 4b8j_A 119 VPRFVQFLTRE---DFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS-------SDDVREQAVWALGNVA 188 (528)
T ss_dssp HHHHHHHHTCT---TCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC-------CHHHHHHHHHHHHHHh
Confidence 44555555431 2256778899999999999889999999999999999999764 3578999999999997
Q ss_pred CCChhHHHhccCCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHH
Q 021417 169 PLAGEALTYLGSASSMHCMVWFL-KSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASF 247 (312)
Q Consensus 169 ~~~~e~k~~l~~~~~l~~lv~~L-~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al 247 (312)
..+++++..+...+.++.++.+| .+.+...+.+|+.+|.+|+...+.....+ . .|+++.|++++.++ ++.....|+
T Consensus 189 ~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~-~-~~~l~~L~~lL~~~-~~~v~~~a~ 265 (528)
T 4b8j_A 189 GDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQ-T-RPALPALARLIHSN-DEEVLTDAC 265 (528)
T ss_dssp HTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHH-H-TTHHHHHHHHTTCC-CHHHHHHHH
T ss_pred CCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHH-H-HHHHHHHHHHHCCC-CHHHHHHHH
Confidence 65677788888889999999999 56689999999999999986533222222 2 48999999999877 889999999
Q ss_pred HHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh-----ccC-CHHHHHHHhhc
Q 021417 248 VVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VFS-TDFAAVITGEE 306 (312)
Q Consensus 248 ~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL-----L~~-~~eGR~ai~~~ 306 (312)
.+|.+|+... +.....+++.|+++.|+++|.+.+..+.+.++ ++. ..+.+..+.+.
T Consensus 266 ~aL~~l~~~~---~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~ 327 (528)
T 4b8j_A 266 WALSYLSDGT---NDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDH 327 (528)
T ss_dssp HHHHHHTSSC---HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTT
T ss_pred HHHHHHHcCC---HHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 9999999775 23345778899999999999877666777666 554 56667666653
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.44 E-value=1.3e-12 Score=135.82 Aligned_cols=195 Identities=10% Similarity=0.078 Sum_probs=144.3
Q ss_pred HHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 021417 88 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 167 (312)
Q Consensus 88 ~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L 167 (312)
.+..+++.|.+. +...+..+++.++.. +|.++. .|++|.|+.+|.+. +..+++.|+.+|..|
T Consensus 116 ~i~~lv~~L~~~----~~~~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~~-------d~~vr~~A~~~L~~L 177 (780)
T 2z6g_A 116 AHPTNVQRLAEP----SQMLKHAVVNLINYQ------DDAELA-TRAIPELTKLLNDE-------DQVVVNKAAVMVHQL 177 (780)
T ss_dssp ----------CC----SCHHHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHCS-------CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhcCc----cHHHHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCCC-------CHHHHHHHHHHHHHH
Confidence 456788888653 344445556665532 455665 79999999999743 357899999999998
Q ss_pred CCCChhHHHhcc-CCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHH
Q 021417 168 FPLAGEALTYLG-SASSMHCMVWFLKSG-DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEA 245 (312)
Q Consensus 168 ~~~~~e~k~~l~-~~~~l~~lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~ 245 (312)
+. +++++..+. .++.++.|+++|+++ +.+.|.+|+.+|.+|+.. ++++..|++. |+++.|+.+|+++ ++..+..
T Consensus 178 ~~-~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~-g~I~~Lv~lL~~~-~~~v~~~ 253 (780)
T 2z6g_A 178 SK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKS-GGIPALVNMLGSP-VDSVLFH 253 (780)
T ss_dssp HT-SHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHHTTCS-CHHHHHH
T ss_pred hC-CChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHc-CCHHHHHHHHcCC-CHHHHHH
Confidence 65 455666665 468999999999977 899999999999999755 6678888786 9999999999987 8899999
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhh---h--cc-CCHHHHHHHhhcC
Q 021417 246 SFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKP---W--VF-STDFAAVITGEER 307 (312)
Q Consensus 246 Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~a---L--L~-~~~eGR~ai~~~~ 307 (312)
|+.+|.+||... +.++..+++.|+|+.|+++|.+.+..+.+.+ | ++ .+.++|.++.+.+
T Consensus 254 A~~aL~nLa~~~---~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~ 318 (780)
T 2z6g_A 254 AITTLHNLLLHQ---EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 318 (780)
T ss_dssp HHHHHHHHHHHS---TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHHHHhCCC---hhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC
Confidence 999999999764 3577777789999999999986543444433 3 44 5789999887763
No 34
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.43 E-value=1e-12 Score=136.73 Aligned_cols=193 Identities=10% Similarity=0.011 Sum_probs=153.1
Q ss_pred CCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhcc--
Q 021417 102 SEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLG-- 179 (312)
Q Consensus 102 ~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~-- 179 (312)
++++..+.+|+..|..++.. +.+|..+.++|++|.|+.+|.+.. ..++++|..+|.+|+...+. ...+.
T Consensus 506 s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~-------~~~k~~Aa~AL~nL~~~~~p-~~~~~~~ 576 (810)
T 3now_A 506 TESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGT-------EKGKRHATQALARIGITINP-EVSFSGQ 576 (810)
T ss_dssp CCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSC-------HHHHHHHHHHHHHHHHHSCH-HHHTTTH
T ss_pred CCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCC-------HHHHHHHHHHHHHHhcCCCh-hhhhcch
Confidence 36777888999999999975 459999999999999999997652 46789999999988542211 22221
Q ss_pred -CCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCC
Q 021417 180 -SASSMHCMVWFLKSG-DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 257 (312)
Q Consensus 180 -~~~~l~~lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~ 257 (312)
..+++++|+.+|.++ +...+.+|+.+|.+|++.+++++..|.+. |+++.|+.++.++ ++...+.|+.+|.||+..+
T Consensus 577 ~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~a-G~l~~Lv~LL~s~-~~~Vq~~A~~~L~NLa~~~ 654 (810)
T 3now_A 577 RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKE-QGVSKIEYYLMED-HLYLTRAAAQCLCNLVMSE 654 (810)
T ss_dssp HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHHHSC-CTTHHHHHHHHHHHHTTSH
T ss_pred hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCh
Confidence 135899999999877 55667799999999987777777777676 9999999999887 7889999999999999886
Q ss_pred CCCcchHHHHHH-cCcHHHHHHHhhhcccchhhhhh-----ccC-CHHHHHHHhhcCCc
Q 021417 258 SAADKPIQKFVD-MGLVSLLLETLVDAQRSLCEKPW-----VFS-TDFAAVITGEERPT 309 (312)
Q Consensus 258 ~~~~~Nr~~~V~-~G~V~~LvelL~~~~~~~~e~aL-----L~~-~~eGR~ai~~~~~~ 309 (312)
.++.++++ .|+++.|+.+|...+..+.+.|. ++. .++...++.++.++
T Consensus 655 ----~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~ 709 (810)
T 3now_A 655 ----DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASW 709 (810)
T ss_dssp ----HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTH
T ss_pred ----HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 79999997 79999999999765555555544 555 56777888775444
No 35
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.42 E-value=2.1e-12 Score=134.24 Aligned_cols=188 Identities=16% Similarity=0.121 Sum_probs=153.7
Q ss_pred HHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 021417 89 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 168 (312)
Q Consensus 89 v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~ 168 (312)
+..+++.+... .|+..+..|+..|+.++... .|+..+.+.|+++.|+.+|.+. +..++..|+.+|.+|+
T Consensus 194 i~~Lv~~L~~~---~d~~vr~~Aa~aL~~Ls~~~-~~~~~i~~~g~I~~Lv~lL~~~-------~~~v~~~A~~aL~nLa 262 (780)
T 2z6g_A 194 VSAIVRTMQNT---NDVETARCTSGTLHNLSHHR-EGLLAIFKSGGIPALVNMLGSP-------VDSVLFHAITTLHNLL 262 (780)
T ss_dssp HHHHHHHHHHC---CCHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC---CCHHHHHHHHHHHHHHhCCc-hhHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHh
Confidence 44455555432 36677788999999998865 5788999999999999999765 3578999999999997
Q ss_pred CCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHH
Q 021417 169 PLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFV 248 (312)
Q Consensus 169 ~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~ 248 (312)
..+++.+..+.+.+.++.++.+|++++.+.+..|+.+|..|+..+++.+..+.+. |+++.|+++++++........+..
T Consensus 263 ~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~-~~i~~Lv~lL~~~~~~~~~~~a~~ 341 (780)
T 2z6g_A 263 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS-GGPQALVNIMRTYTYEKLLWTTSR 341 (780)
T ss_dssp HHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTT-THHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc-CCHHHHHHHHhcCCHHHHHHHHHH
Confidence 6556677777788999999999999999999999999999986667788888676 999999999998745556668899
Q ss_pred HHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 249 VVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 249 aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
+|.+||... .|+..+++.|+|+.|+++|.+.+..+.+.++
T Consensus 342 aL~~Ls~~~----~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~ 381 (780)
T 2z6g_A 342 VLKVLSVCS----SNKPAIVEAGGMQALGLHLTDPSQRLVQNCL 381 (780)
T ss_dssp HHHHHHTST----THHHHHHHTTHHHHHGGGTTCSCHHHHHHHH
T ss_pred HHHHhhcCh----HHHHHHHHhchHHHHHHHHcCCchHHHHHHH
Confidence 999999875 7999999999999999999765544554444
No 36
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.40 E-value=9e-12 Score=118.83 Aligned_cols=202 Identities=13% Similarity=0.112 Sum_probs=158.3
Q ss_pred HHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 021417 88 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 167 (312)
Q Consensus 88 ~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L 167 (312)
-+..+++.+... .++..+..|+..|..++..+..+++.+.+.|++|.|+.+|.+. +..+++.|+.+|.++
T Consensus 65 ~i~~L~~~L~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-------~~~vr~~a~~~L~~l 134 (450)
T 2jdq_A 65 VVARFVEFLKRK---ENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE-------FEDVQEQAVWALGNI 134 (450)
T ss_dssp HHHHHHHHHTCT---TCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHCCC---CCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC-------CHHHHHHHHHHHHHH
Confidence 345555555431 2566778899999999998888888888999999999999764 357899999999999
Q ss_pred CCCChhHHHhccCCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHhccc-hHHHHHhhhhhchHHHHHHhhcCCCChHHHHH
Q 021417 168 FPLAGEALTYLGSASSMHCMVWFLKS-GDLSRRRNTVLVLREVISSD-HRRVNMFLEIEGAIESLYTLIKEPICPTATEA 245 (312)
Q Consensus 168 ~~~~~e~k~~l~~~~~l~~lv~~L~~-gs~~~r~~Aa~lL~~Ls~~~-~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~ 245 (312)
+..+.+.+..+.+.+.++.++.+|++ .+.+.|.+|+.+|.+|+... +.....+ - .++++.|+++++++ ++.....
T Consensus 135 ~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~-~~~l~~L~~~l~~~-~~~v~~~ 211 (450)
T 2jdq_A 135 AGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-V-SPCLNVLSWLLFVS-DTDVLAD 211 (450)
T ss_dssp HTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-T-GGGHHHHHHHTTCC-CHHHHHH
T ss_pred ccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-H-HHHHHHHHHHHccC-CHHHHHH
Confidence 77667788888788999999999996 68999999999999998543 3222222 2 48999999999877 7889999
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh-----ccCC-HHHHHHHhh
Q 021417 246 SFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VFST-DFAAVITGE 305 (312)
Q Consensus 246 Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL-----L~~~-~eGR~ai~~ 305 (312)
|..+|.+|+... ..++..+++.|+++.|+++|.+.+..+.+.++ ++.. ++.+..+.+
T Consensus 212 a~~~L~~l~~~~---~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 274 (450)
T 2jdq_A 212 ACWALSYLSDGP---NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN 274 (450)
T ss_dssp HHHHHHHHTSSS---HHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT
T ss_pred HHHHHHHHHCCC---cHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH
Confidence 999999999864 36788889999999999999876666666666 5543 334444443
No 37
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.40 E-value=9e-12 Score=122.87 Aligned_cols=190 Identities=13% Similarity=0.123 Sum_probs=154.6
Q ss_pred CchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCC
Q 021417 104 DQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASS 183 (312)
Q Consensus 104 d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~ 183 (312)
++..+..|+..|..++..++.++..+.+.|+++.|+.+|.+. +..+++.|+.+|.+|+..+++++..+...+.
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-------~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~ 216 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-------SVEVKEQAIWALGNVAGDSTDYRDYVLQCNA 216 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHhCCCccchHHHHHcCc
Confidence 556778899999999998888999999999999999999764 3578999999999997766778888778899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcch
Q 021417 184 MHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKP 263 (312)
Q Consensus 184 l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~N 263 (312)
++.++.+|.+.+.+.+.+|+.+|.+|+............ .|+++.|++++.++ ++.....|+.+|.+|+... +.+
T Consensus 217 l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~---~~~ 291 (530)
T 1wa5_B 217 MEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLAKLIYSM-DTETLVDACWAISYLSDGP---QEA 291 (530)
T ss_dssp HHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHH-GGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSC---HHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHH-HhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCC---HHH
Confidence 999999999999999999999999998553111222213 48999999999887 7889999999999999764 357
Q ss_pred HHHHHHcCcHHHHHHHhhhcccchhhhhh-----ccC-CHHHHHHHhh
Q 021417 264 IQKFVDMGLVSLLLETLVDAQRSLCEKPW-----VFS-TDFAAVITGE 305 (312)
Q Consensus 264 r~~~V~~G~V~~LvelL~~~~~~~~e~aL-----L~~-~~eGR~ai~~ 305 (312)
+..+++.|+++.|+++|.+.+..+.+.++ ++. ..+....+.+
T Consensus 292 ~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~ 339 (530)
T 1wa5_B 292 IQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN 339 (530)
T ss_dssp HHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88888999999999999876666666665 553 4555555544
No 38
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.39 E-value=2.1e-14 Score=149.59 Aligned_cols=62 Identities=16% Similarity=0.026 Sum_probs=56.9
Q ss_pred cchhhhhhHHHhhhhccc-ch-hhHHhhHHH-HhhCCCcccccccccCCCCccccchhh--hhhhch
Q 021417 6 HVRLINLAKWLVESAWVA-LR-LFQERCEEE-LLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~-~~~er~~~e-~~~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc~ 67 (312)
+.|+||+|..||+|||+. ++ +||||..|+ |...+.|||+|+|+|.+.+++|||+|| |++||.
T Consensus 890 ~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~ 956 (968)
T 3m62_A 890 DEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKK 956 (968)
T ss_dssp GGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred HHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCcccccccHHHHHHHHHHHH
Confidence 579999999999999976 65 799999988 555689999999999999999999999 999998
No 39
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.38 E-value=9.7e-15 Score=104.43 Aligned_cols=54 Identities=13% Similarity=-0.007 Sum_probs=48.1
Q ss_pred chhhhhhHHHhhhhccc--chhhHHhhHHH-HhhCCCcccccccccCCCCccccchh
Q 021417 7 VRLINLAKWLVESAWVA--LRLFQERCEEE-LLWAAEMIKIKAQDLKGKEVKVNTSL 60 (312)
Q Consensus 7 ~~~~~~~~~~~~~~~~~--~~~~~er~~~e-~~~G~~TCP~T~Q~L~~~~l~PN~tL 60 (312)
+|+||++.++|+|||+. ++++|||..|+ |...|.|||+|+|+|...+|+||++-
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~~ 59 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS 59 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECccC
Confidence 68999999999999975 89999999888 55577899999999999999999863
No 40
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.38 E-value=2.1e-11 Score=116.29 Aligned_cols=218 Identities=9% Similarity=0.110 Sum_probs=165.1
Q ss_pred ccchhh-hhhhchhhhhccccCC-CCCCCCCChHHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcC
Q 021417 56 VNTSLL-YQQTKFNLQREKSEGY-AKLGIPMSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYG 133 (312)
Q Consensus 56 PN~tLr-Iq~Wc~~~~~n~~~gv-~tp~~p~~~~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG 133 (312)
++..+| ..-|+. .|-..+. +.++......-+..+++-+. .+|+..+..++..|..++...+.++..+...|
T Consensus 162 ~~~~v~~~a~~~L---~~l~~~~~~~~~~~~~~~~l~~L~~~l~----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~ 234 (450)
T 2jdq_A 162 NRLTMTRNAVWAL---SNLCRGKSPPPEFAKVSPCLNVLSWLLF----VSDTDVLADACWALSYLSDGPNDKIQAVIDAG 234 (450)
T ss_dssp CCHHHHHHHHHHH---HHHHCCSSSCCCGGGTGGGHHHHHHHTT----CCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHH---HHHhCCCCCCCCHHHHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcC
Confidence 566677 666765 3332221 11111112233444555553 24666667789999999988877888888999
Q ss_pred CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Q 021417 134 AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSD 213 (312)
Q Consensus 134 ~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~ 213 (312)
+++.|+.+|.+. +..+++.|+.+|.+++..+++....+.+.+.++.++.+|.+++...|..|+.+|.+++..+
T Consensus 235 ~i~~L~~ll~~~-------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~ 307 (450)
T 2jdq_A 235 VCRRLVELLMHN-------DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN 307 (450)
T ss_dssp THHHHHHHTTCS-------CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHCCC-------chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999999643 3578999999999997655665666667799999999999999999999999999998655
Q ss_pred hHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcC-CCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 214 HRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS-ASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 214 ~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~-~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
+.....+.+. |+++.|+.+++++ ++..++.|..+|.+++.. . ..+...+++.|+++.|+++|.+.+..+.+.++
T Consensus 308 ~~~~~~~~~~-~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~---~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~ 382 (450)
T 2jdq_A 308 RAQIQTVIDA-NIFPALISILQTA-EFRTRKEAAWAITNATSGGS---AEQIKYLVELGCIKPLCDLLTVMDSKIVQVAL 382 (450)
T ss_dssp HHHHHHHHHT-THHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHH
T ss_pred HHHHHHHHHC-CCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCC---HHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHH
Confidence 5555555465 9999999999987 889999999999999863 1 25778889999999999999877666777666
No 41
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.35 E-value=2.4e-11 Score=112.86 Aligned_cols=157 Identities=9% Similarity=0.100 Sum_probs=132.6
Q ss_pred HHHHHH-HHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 021417 89 VLEINS-KITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 167 (312)
Q Consensus 89 v~~ll~-~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L 167 (312)
+..++. -|. .+++..+..|+.-|..++..++.+|..+.+.|++|.|+.+|.+.. +..++++|+.+|.++
T Consensus 83 l~~Lv~~lL~----s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~------~~~v~~~A~~ALsnl 152 (296)
T 1xqr_A 83 MHLLVGRYLE----AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDA------CDTVRVKALFAISCL 152 (296)
T ss_dssp HHHHHHTTTT----CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCS------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc----CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCC------CHHHHHHHHHHHHHH
Confidence 344555 333 256677788999999999999999999999999999999997531 256899999999999
Q ss_pred CCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHH
Q 021417 168 FPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASF 247 (312)
Q Consensus 168 ~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al 247 (312)
+..+...+..+.+.+.++.++.+|++++...|..|+.+|.+|+..+++.+..+.+. |+++.|+.+|+.+ ++...+.|+
T Consensus 153 ~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~-g~i~~Lv~LL~~~-d~~v~~~al 230 (296)
T 1xqr_A 153 VREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM-GMVQQLVALVRTE-HSPFHEHVL 230 (296)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT-THHHHHHHHHTSC-CSTHHHHHH
T ss_pred HcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHc-CCHHHHHHHHcCC-ChhHHHHHH
Confidence 76566666666677899999999999999999999999999986667777778676 9999999999887 789999999
Q ss_pred HHHHHhhcCC
Q 021417 248 VVVYHMITSA 257 (312)
Q Consensus 248 ~aL~~L~~~~ 257 (312)
.+|.+++...
T Consensus 231 ~aL~~l~~~~ 240 (296)
T 1xqr_A 231 GALCSLVTDF 240 (296)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhCC
Confidence 9999998763
No 42
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.33 E-value=8.9e-14 Score=119.99 Aligned_cols=62 Identities=10% Similarity=0.018 Sum_probs=55.6
Q ss_pred cchhhhhhHHHhhhhccc-chhhHHhhHHH-Hh-hCCCcccccccccCCCCccccchhh--hhhhch
Q 021417 6 HVRLINLAKWLVESAWVA-LRLFQERCEEE-LL-WAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~er~~~e-~~-~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc~ 67 (312)
+.|.||++..+|.|||++ .+++|||..|+ |+ .++.|||+|+++|...+|+||+.|| |+.|+.
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~ 171 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQ 171 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred HhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHH
Confidence 569999999999999977 99999999877 33 3345899999999988999999999 999998
No 43
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.33 E-value=2.9e-12 Score=131.91 Aligned_cols=172 Identities=12% Similarity=0.136 Sum_probs=130.3
Q ss_pred hhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHH---HHHH
Q 021417 125 NKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLS---RRRN 201 (312)
Q Consensus 125 nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~---~r~~ 201 (312)
||+.+.++|++|.|+.++.+. +..+++.|+.+|.+|+ .+.++|..+...|+++.++.+|.+++.. .|.+
T Consensus 449 ~~~~l~eaGvIp~Lv~Ll~S~-------s~~~re~A~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~ 520 (778)
T 3opb_A 449 NEKYILRTELISFLKREMHNL-------SPNCKQQVVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRIL 520 (778)
T ss_dssp HHHHTTTTTHHHHHHHHGGGS-------CHHHHHHHHHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCC-------CHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHH
Confidence 788899999999999999765 2468999999999995 4688999999999999999999999654 7999
Q ss_pred HHHHHHHHhcc-chHHHHHhh--hhhchHHHHHHhhcCC-CCh------------HHHHHHHHHHHHhhcCCCCC-cchH
Q 021417 202 TVLVLREVISS-DHRRVNMFL--EIEGAIESLYTLIKEP-ICP------------TATEASFVVVYHMITSASAA-DKPI 264 (312)
Q Consensus 202 Aa~lL~~Ls~~-~~~~~~~Ig--~~~g~i~~LV~ll~~~-~~~------------~a~~~Al~aL~~L~~~~~~~-~~Nr 264 (312)
|+.+|.+|+.. ++. ..++ ...|+|++|+.+|..+ ... .....|+.+|.||++.+++. ++.|
T Consensus 521 AA~ALArLlis~np~--~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r 598 (778)
T 3opb_A 521 GCRALTRMLIFTNPG--LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVC 598 (778)
T ss_dssp HHHHHHHHHHTSCHH--HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHhcCCHH--HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHH
Confidence 99999999733 333 2343 2248999999999831 111 23778999999999985110 1238
Q ss_pred HHHHHc-CcHHHHHHHhhhcccchhhhhh-----ccCCHHHH-HHHhhc
Q 021417 265 QKFVDM-GLVSLLLETLVDAQRSLCEKPW-----VFSTDFAA-VITGEE 306 (312)
Q Consensus 265 ~~~V~~-G~V~~LvelL~~~~~~~~e~aL-----L~~~~eGR-~ai~~~ 306 (312)
.++++. |+++.|.++|.+....+...|+ |+.+++|+ +.+.++
T Consensus 599 ~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~ 647 (778)
T 3opb_A 599 KHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNL 647 (778)
T ss_dssp HHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCC
T ss_pred HHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhh
Confidence 999996 9999999999865444555444 77788887 366543
No 44
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=7.8e-13 Score=102.47 Aligned_cols=65 Identities=5% Similarity=-0.104 Sum_probs=56.1
Q ss_pred CcccchhhhhhHHHhhhhccc--chhhHHhhHHH-HhhC------CCcccccccc---cCCCCccccchhh--hhhhch
Q 021417 3 GKRHVRLINLAKWLVESAWVA--LRLFQERCEEE-LLWA------AEMIKIKAQD---LKGKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~er~~~e-~~~G------~~TCP~T~Q~---L~~~~l~PN~tLr--Iq~Wc~ 67 (312)
|..+.|.||++..+|+|||+. .+++|+|..|+ |+.. ..+||+|+.+ |...+|+||+.|+ |+.|+.
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence 345679999999999999976 79999999877 4432 4699999998 8888999999999 999998
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.03 E-value=7.4e-09 Score=104.49 Aligned_cols=194 Identities=14% Similarity=0.164 Sum_probs=148.8
Q ss_pred CCCChHHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHH
Q 021417 82 IPMSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEIL 161 (312)
Q Consensus 82 ~p~~~~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al 161 (312)
++...+.+..|+.++.++. -.+++..|+..|+.++|+. |.- +.+++.+.|+..|....+ +.+....+|
T Consensus 16 ~qs~~etI~~L~~Rl~~~t---l~eDRR~Av~~Lk~~sk~y---~~~-Vg~~~l~~li~~L~~d~~-----D~e~v~~~L 83 (651)
T 3grl_A 16 QHTEAETIQKLCDRVASST---LLDDRRNAVRALKSLSKKY---RLE-VGIQAMEHLIHVLQTDRS-----DSEIIGYAL 83 (651)
T ss_dssp --CHHHHHHHHHHHHHHCC---SHHHHHHHHHHHHHTTTTT---TTH-HHHHTHHHHHHHHHSCTT-----CHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhcc---chhHHHHHHHHHHHHHHHh---HHH-hhhhhHHHHHHHHhcccc-----cHHHHHHHH
Confidence 3344578899999998764 3456688999999998754 333 445678999999975432 357788889
Q ss_pred HHHHhcCCCChh-----------------HHH-hccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchH-HHHHhhh
Q 021417 162 STLTLLFPLAGE-----------------ALT-YLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHR-RVNMFLE 222 (312)
Q Consensus 162 ~iL~~L~~~~~e-----------------~k~-~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~-~~~~Ig~ 222 (312)
.+|.++...+++ +-+ .+.+++.++.++.+|++.+...|.+|+.+|..|+...+. +.+.|-.
T Consensus 84 etL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~ 163 (651)
T 3grl_A 84 DTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILV 163 (651)
T ss_dssp HHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHh
Confidence 888665443321 111 245678999999999999999999999999999877664 6676767
Q ss_pred hhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHc-CcHHHHHHHhhhcc----cchhhhhh
Q 021417 223 IEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDM-GLVSLLLETLVDAQ----RSLCEKPW 292 (312)
Q Consensus 223 ~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~-G~V~~LvelL~~~~----~~~~e~aL 292 (312)
.++.|+.||.+|.+. ....+..|+..|.+|+... .+..++|.. |+++.|+.++.+.+ ..+.+.+|
T Consensus 164 ~p~gi~~Lv~lL~d~-rE~iRneallLL~~Lt~~n----~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL 233 (651)
T 3grl_A 164 SPMGVSRLMDLLADS-REVIRNDGVLLLQALTRSN----GAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCL 233 (651)
T ss_dssp STTHHHHHHGGGGCS-SHHHHHHHHHHHHHHHTTC----HHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHH
T ss_pred CcccHHHHHHHHhCc-hHHHHHHHHHHHHHHhcCC----HHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHH
Confidence 789999999999887 6677888999999999986 788888887 99999999997532 24667776
No 46
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.01 E-value=2.1e-11 Score=110.91 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=55.7
Q ss_pred cchhhhhhHHHhhhhccc-chhhHHhhHHH-Hh-hCCCcccccccccCCCCccccchhh--hhhhch
Q 021417 6 HVRLINLAKWLVESAWVA-LRLFQERCEEE-LL-WAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~er~~~e-~~-~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc~ 67 (312)
+.|.||++..+|.|||++ .+++|+|..|+ |+ .++.|||+|+++|...+|+||++|| |++||.
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~ 273 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFIS 273 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHT
T ss_pred cccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHH
Confidence 578999999999999977 99999999877 33 3567799999999988999999999 999998
No 47
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.91 E-value=2e-08 Score=103.54 Aligned_cols=187 Identities=10% Similarity=0.034 Sum_probs=138.4
Q ss_pred hhhhHHHHHHHHHHHhchhhhHHHHhc-CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCCh------------
Q 021417 106 TGGRDLVAKIKKWIKESERNKRCIVDY-GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAG------------ 172 (312)
Q Consensus 106 ~~~~~al~~l~~lak~s~~nR~~l~~a-G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~------------ 172 (312)
..+.-|+.-|.-++...+ .|..|++. |+++.|+.++....+ ..+.-.++.+|.||....+
T Consensus 349 ~~~~~AvEgLaYLSl~~~-VKe~L~~d~~~L~~Lv~llk~~~d------~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~L 421 (778)
T 3opb_A 349 PKVEMSVEALAYLSLKAS-VKIMIRSNESFTEILLTMIKSQKM------THCLYGLLVIMANLSTLPEEXXXXXXXXXXX 421 (778)
T ss_dssp HHHHHHHHHHHHHTTSSH-HHHHHHHCHHHHHHHHHHHTTTCC------TTHHHHHHHHHHHTTCCCCCCCCCCC-----
T ss_pred cHHHHHHHHHHHHhCCHH-HHHHHHhCHHHHHHHHHHHhCCCC------chHHHHHHHHHHHhcCCCcccchhhhhhhhh
Confidence 345678988888888665 67777776 889999999975321 2468888999999875211
Q ss_pred -------------------------h-HHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhch
Q 021417 173 -------------------------E-ALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGA 226 (312)
Q Consensus 173 -------------------------e-~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~ 226 (312)
+ ++..+.+.|+++.++.++++++...|+.|+.+|.+|+.. ++++..+.+. |+
T Consensus 422 k~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqq-Ga 499 (778)
T 3opb_A 422 XXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQ-GA 499 (778)
T ss_dssp -------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHT-TH
T ss_pred hhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHC-CC
Confidence 1 455677899999999999999999999999999999755 7778778564 99
Q ss_pred HHHHHHhhcCCCCh--HHHHHHHHHHHHhhcCCCCCcchHHHHHH----cCcHHHHHHHhhh-ccc--------------
Q 021417 227 IESLYTLIKEPICP--TATEASFVVVYHMITSASAADKPIQKFVD----MGLVSLLLETLVD-AQR-------------- 285 (312)
Q Consensus 227 i~~LV~ll~~~~~~--~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~----~G~V~~LvelL~~-~~~-------------- 285 (312)
++.|+.++.++... ..+..|+.+|.++..+. |-..+.. .|+|++|+++|.. .+.
T Consensus 500 l~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~-----np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l 574 (778)
T 3opb_A 500 VKIILEYLANKQDIGEPIRILGCRALTRMLIFT-----NPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLT 574 (778)
T ss_dssp HHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS-----CHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHH
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC-----CHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHH
Confidence 99999999877322 27889999999998653 3222221 4999999999972 221
Q ss_pred --chhhhhh--ccCCH-----HHHHHHhhc
Q 021417 286 --SLCEKPW--VFSTD-----FAAVITGEE 306 (312)
Q Consensus 286 --~~~e~aL--L~~~~-----eGR~ai~~~ 306 (312)
-.+-+|| |++.+ +.|..|..+
T Consensus 575 ~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~ 604 (778)
T 3opb_A 575 DNYEALLALTNLASSETSDGEEVCKHIVST 604 (778)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcCCcccchHHHHHHHHh
Confidence 1233455 77764 457877775
No 48
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.76 E-value=7.5e-10 Score=81.99 Aligned_cols=63 Identities=10% Similarity=-0.125 Sum_probs=55.2
Q ss_pred ccchhhhhhHHHhhhhccc-chhhHHhhHHH-H-hhCCCcccccccccCCCCccccchhh--hhhhch
Q 021417 5 RHVRLINLAKWLVESAWVA-LRLFQERCEEE-L-LWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~~er~~~e-~-~~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc~ 67 (312)
-+.+.||+.+.+|.||++. -+++|.|.-|+ | ..|+.+||++++++...+++||+.|+ |+.|..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~ 73 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCE 73 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHH
T ss_pred cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHH
Confidence 3568899999999999976 88899888654 3 44699999999999988999999999 999998
No 49
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.5e-08 Score=91.73 Aligned_cols=65 Identities=11% Similarity=0.007 Sum_probs=56.2
Q ss_pred CcccchhhhhhHHHhhhhccc--chhhHHhhHHH-Hhh--CCCcccccc--cccCCCCccccchhh--hhhhch
Q 021417 3 GKRHVRLINLAKWLVESAWVA--LRLFQERCEEE-LLW--AAEMIKIKA--QDLKGKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~er~~~e-~~~--G~~TCP~T~--Q~L~~~~l~PN~tLr--Iq~Wc~ 67 (312)
|....+.||++..+|+|||+. -+++|+|..|+ ||. |+.+||+|| +++...+|+||+.|+ |+.|..
T Consensus 177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~ 250 (267)
T 3htk_C 177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKM 250 (267)
T ss_dssp SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHH
T ss_pred CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHH
Confidence 567889999999999999974 68999999887 444 457999966 999989999999999 999986
No 50
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=98.32 E-value=3.4e-06 Score=85.25 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=117.3
Q ss_pred HHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChh-HHHhc-cCCCCHHHHHHHHhcCCHHHHHHHHHH
Q 021417 128 CIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGE-ALTYL-GSASSMHCMVWFLKSGDLSRRRNTVLV 205 (312)
Q Consensus 128 ~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e-~k~~l-~~~~~l~~lv~~L~~gs~~~r~~Aa~l 205 (312)
++.+.+.++.|+.+|.+. +..++-.++..|..|+....+ .++.| ..++.++.++.+|....-..|-.|+.+
T Consensus 117 f~~~~~~i~~Ll~lL~~~-------df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallL 189 (651)
T 3grl_A 117 FIKQQENVTLLLSLLEEF-------DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLL 189 (651)
T ss_dssp HHHSTHHHHHHHHHTTCC-------CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHH
T ss_pred HHcCCccHHHHHHHhcCc-------cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHH
Confidence 345568899999999754 356788888888877544433 66654 479999999999998888899999999
Q ss_pred HHHHhccchHHHHHhhhhhchHHHHHHhhcCC---CChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhh
Q 021417 206 LREVISSDHRRVNMFLEIEGAIESLYTLIKEP---ICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLV 281 (312)
Q Consensus 206 L~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~---~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~ 281 (312)
|.+|+..+.+....+ .-+|+|+.|+++++++ .....+.+++.+|.||.... ..|..-+.|.|+++.|..+|.
T Consensus 190 L~~Lt~~n~~iQklV-AFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N---~sNQ~~FrEt~~i~~L~~LL~ 264 (651)
T 3grl_A 190 LQALTRSNGAIQKIV-AFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNN---NSNQNFFKEGSYIQRMKPWFE 264 (651)
T ss_dssp HHHHHTTCHHHHHHH-HHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTC---HHHHHHHHHTTCGGGGGGGGC
T ss_pred HHHHhcCCHHHHHHH-HHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcC---HHHHHHHHHcCCHHHHHHHhC
Confidence 999998878878788 5569999999999853 12367899999999998875 469999999999999999985
No 51
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.86 E-value=9.4e-05 Score=75.65 Aligned_cols=169 Identities=8% Similarity=0.027 Sum_probs=120.6
Q ss_pred HHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHH-HHhhcccccccchhHHHHHHHHHHHHh
Q 021417 88 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLA-AAFESFSKTCLDEHVSVLEEILSTLTL 166 (312)
Q Consensus 88 ~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv-~lL~s~~~~~~~~~~~v~e~Al~iL~~ 166 (312)
++.-++++|.+ .|+..+..|+..|..++. +..+|+.+...|++..++ .+|... +.+++++|..+|.+
T Consensus 35 ~i~Pll~~L~S----~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~-------~~~Vr~~A~gaLrn 102 (684)
T 4gmo_A 35 KILPVLKDLKS----PDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDN-------NIDSRAAGWEILKV 102 (684)
T ss_dssp TTHHHHHHHSS----SCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCS-------CHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCC----CCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCC-------CHHHHHHHHHHHHH
Confidence 34567888854 467788889999999996 677888888888776654 456433 46899999999999
Q ss_pred cCCC-ChhHHHhccCCCCHHHHHHHHhcCCH---------------------HHHHHHHHHHHHHhccchHHHHHhhhhh
Q 021417 167 LFPL-AGEALTYLGSASSMHCMVWFLKSGDL---------------------SRRRNTVLVLREVISSDHRRVNMFLEIE 224 (312)
Q Consensus 167 L~~~-~~e~k~~l~~~~~l~~lv~~L~~gs~---------------------~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~ 224 (312)
|+.. ..+....+...+.+++|..+|++... +.-.+++.+|..|+..++.....+...
T Consensus 103 L~~~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~- 181 (684)
T 4gmo_A 103 LAQEEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATK- 181 (684)
T ss_dssp HHHHSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTC-
T ss_pred HHhhcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhc-
Confidence 9642 23444556678899999998864211 122467788888887666667777565
Q ss_pred chHHHHHHhhcCC--CChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCc
Q 021417 225 GAIESLYTLIKEP--ICPTATEASFVVVYHMITSASAADKPIQKFVDMGL 272 (312)
Q Consensus 225 g~i~~LV~ll~~~--~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~ 272 (312)
+.++.|+.+|.+. ........|+.+|+.++... ......+.+.|.
T Consensus 182 ~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn---~~~~~~i~~~~~ 228 (684)
T 4gmo_A 182 QTILRLLFRLISADIAPQDIYEEAISCLTTLSEDN---LKVGQAITDDQE 228 (684)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTC---HHHHHHHHTCCS
T ss_pred ccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccC---HHHHHHHHhcch
Confidence 8899999887532 34578889999999998864 234455555554
No 52
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.78 E-value=0.0014 Score=55.28 Aligned_cols=92 Identities=15% Similarity=0.047 Sum_probs=43.7
Q ss_pred CChHHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHH
Q 021417 84 MSSVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILST 163 (312)
Q Consensus 84 ~~~~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~i 163 (312)
..+.....+++.+.+ +|+..+..|+..|..+.. .++++.|+.+|... +..++..|+.+
T Consensus 11 ~~~~~~~~~i~~L~~----~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~-------~~~vr~~a~~~ 68 (201)
T 3ltj_A 11 TDPEKVEMYIKNLQD----DSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE-------DAWVRRAAADA 68 (201)
T ss_dssp CCHHHHHHHHHHTTC----SCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-------SHHHHHHHHHH
T ss_pred cCCcchHHHHHHhcC----CCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCC-------CHHHHHHHHHH
Confidence 445556666666643 344444445544443321 23456666666422 23455555555
Q ss_pred HHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Q 021417 164 LTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLRE 208 (312)
Q Consensus 164 L~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~ 208 (312)
|..+. .++.++.++..|.+.+...|..|+..|..
T Consensus 69 L~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 69 LGQIG-----------DERAVEPLIKALKDEDGWVRQSAAVALGQ 102 (201)
T ss_dssp HHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHhhC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 54431 12344444444544444455544444443
No 53
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.67 E-value=0.00095 Score=56.86 Aligned_cols=53 Identities=8% Similarity=-0.070 Sum_probs=27.5
Q ss_pred chHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 225 GAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 225 g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
.+++.|+.++++. ++..+..|+.+|..+.. ..+++.|.++|.+.+..+-..|.
T Consensus 143 ~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~--------------~~~~~~L~~~l~d~~~~vr~~A~ 195 (211)
T 3ltm_A 143 RAVEPLIKALKDE-DGWVRQSAADALGEIGG--------------ERVRAAMEKLAETGTGFARKVAV 195 (211)
T ss_dssp GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS--------------HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc--------------hhHHHHHHHHHhCCCHHHHHHHH
Confidence 3455555555544 45555555555555521 12456666666655544444444
No 54
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.36 E-value=0.0038 Score=52.60 Aligned_cols=115 Identities=15% Similarity=0.046 Sum_probs=87.9
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Q 021417 133 GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISS 212 (312)
Q Consensus 133 G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~ 212 (312)
++++.|+.+|.+. +..++..|+.+|..+. .+..++.++..|++.+...|..|+..|-.+.
T Consensus 76 ~~~~~L~~~l~d~-------~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-- 135 (201)
T 3ltj_A 76 RAVEPLIKALKDE-------DGWVRQSAAVALGQIG-----------DERAVEPLIKALKDEDWFVRIAAAFALGEIG-- 135 (201)
T ss_dssp GGHHHHHHHTTCS-------SHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHcCC-------CHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--
Confidence 5789999988643 3578999999988752 2357889999999999999999999987762
Q ss_pred chHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 213 DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 213 ~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
. +++++.|+.++.+. ++..+..|+.+|..+... .+++.|.++|.+.+..+.+.+.
T Consensus 136 ---------~-~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~~--------------~~~~~L~~~l~d~~~~vr~~A~ 190 (201)
T 3ltj_A 136 ---------D-ERAVEPLIKALKDE-DGWVRQSAADALGEIGGE--------------RVRAAMEKLAETGTGFARKVAV 190 (201)
T ss_dssp ---------C-GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCSH--------------HHHHHHHHHHHHCCHHHHHHHH
T ss_pred ---------C-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCch--------------hHHHHHHHHHhCCCHHHHHHHH
Confidence 2 26788999999877 888899999999888321 1677888888776554444433
No 55
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.34 E-value=0.0037 Score=53.13 Aligned_cols=138 Identities=18% Similarity=0.098 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 021417 86 SVEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLT 165 (312)
Q Consensus 86 ~~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~ 165 (312)
+..+..+++.+.. .|+..+..|+..|..+. ..++++.|+.+|.+. +..++..|+.+|.
T Consensus 18 ~~~~~~L~~~L~~----~~~~vR~~A~~~L~~~~-----------~~~~~~~L~~~l~~~-------~~~vr~~a~~aL~ 75 (211)
T 3ltm_A 18 PEKVEMYIKNLQD----DSYYVRRAAAYALGKIG-----------DERAVEPLIKALKDE-------DAWVRRAAADALG 75 (211)
T ss_dssp GGGHHHHHHHTTC----SSHHHHHHHHHHHHHHC-----------CGGGHHHHHHHTTCS-------CHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHcC----CCHHHHHHHHHHHHHhC-----------CccHHHHHHHHHcCC-------CHHHHHHHHHHHH
Confidence 4456666776643 35555555655554432 135678888888643 3467778877777
Q ss_pred hcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHH
Q 021417 166 LLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEA 245 (312)
Q Consensus 166 ~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~ 245 (312)
.+. .++.++.++..|++.+...|..|+..|..+. . +++++.|+.+++++ ++..+..
T Consensus 76 ~~~-----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-----------~-~~~~~~L~~~l~d~-~~~vr~~ 131 (211)
T 3ltm_A 76 QIG-----------DERAVEPLIKALKDEDGWVRQSAAVALGQIG-----------D-ERAVEPLIKALKDE-DWFVRIA 131 (211)
T ss_dssp HHC-----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-----------C-GGGHHHHHHHTTCS-SHHHHHH
T ss_pred hhC-----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-----------c-HHHHHHHHHHHhCC-CHHHHHH
Confidence 652 2356778888888888888888888777652 2 25677788888766 7777777
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhc
Q 021417 246 SFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDA 283 (312)
Q Consensus 246 Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~ 283 (312)
|+.+|..+... .+++.|+++|.+.
T Consensus 132 a~~aL~~~~~~--------------~~~~~L~~~l~d~ 155 (211)
T 3ltm_A 132 AAFALGEIGDE--------------RAVEPLIKALKDE 155 (211)
T ss_dssp HHHHHHHHCCG--------------GGHHHHHHHTTCS
T ss_pred HHHHHHHcCCH--------------HHHHHHHHHHcCC
Confidence 88887777321 2566666666544
No 56
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=97.08 E-value=0.0025 Score=65.10 Aligned_cols=163 Identities=10% Similarity=0.080 Sum_probs=112.8
Q ss_pred CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHH-HHHhcCCHHHHHHHHHHHHHHhc
Q 021417 133 GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMV-WFLKSGDLSRRRNTVLVLREVIS 211 (312)
Q Consensus 133 G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv-~~L~~gs~~~r~~Aa~lL~~Ls~ 211 (312)
.+.|+ +..|.+.+ ...++.|+.+|.+|+. +.+.+..+...+.+..++ .+|...+.+.|++|+.+|.+|+.
T Consensus 35 ~i~Pl-l~~L~S~~-------~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 35 KILPV-LKDLKSPD-------AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp TTHHH-HHHHSSSC-------CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH
T ss_pred hHHHH-HHHcCCCC-------HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 45554 46676652 3568999999999965 677777777778887765 46777799999999999999985
Q ss_pred cc-hHHHHHhhhhhchHHHHHHhhcCC-------------CC-------hHHHHHHHHHHHHhhcCCCCCcchHHHHHHc
Q 021417 212 SD-HRRVNMFLEIEGAIESLYTLIKEP-------------IC-------PTATEASFVVVYHMITSASAADKPIQKFVDM 270 (312)
Q Consensus 212 ~~-~~~~~~Ig~~~g~i~~LV~ll~~~-------------~~-------~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~ 270 (312)
.. .+.+..+.+. |+++.|..+++.. .. ......++.+|.+||... ++....++..
T Consensus 106 ~~g~d~~~~l~~~-~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s---~~~~~~v~~~ 181 (684)
T 4gmo_A 106 EEEADFCVHLYRL-DVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALAR---DEIHEAVATK 181 (684)
T ss_dssp HSCHHHHHHHHHT-THHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHC---HHHHHHHHTC
T ss_pred hcCchHHHHHHHc-ChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHhc
Confidence 43 4666666565 9999999988531 00 123345778999998764 3567788889
Q ss_pred CcHHHHHHHhhhccc---chhhhhh-----ccC-CHHHHHHHhhcCC
Q 021417 271 GLVSLLLETLVDAQR---SLCEKPW-----VFS-TDFAAVITGEERP 308 (312)
Q Consensus 271 G~V~~LvelL~~~~~---~~~e~aL-----L~~-~~eGR~ai~~~~~ 308 (312)
|.++.|+..|.+.+. .+...++ +++ ..+--..+.+++.
T Consensus 182 ~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~ 228 (684)
T 4gmo_A 182 QTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQE 228 (684)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCS
T ss_pred ccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcch
Confidence 999999999975432 3444444 332 3445556665543
No 57
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.01 E-value=8.7e-05 Score=56.01 Aligned_cols=62 Identities=15% Similarity=-0.123 Sum_probs=50.6
Q ss_pred cchhhhhhHHHhhhhcccc--hhhHHhhHH-HHhh--CCCcccccccccC-CCCccccchhh--hhhhch
Q 021417 6 HVRLINLAKWLVESAWVAL--RLFQERCEE-ELLW--AAEMIKIKAQDLK-GKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~--~~~~er~~~-e~~~--G~~TCP~T~Q~L~-~~~l~PN~tLr--Iq~Wc~ 67 (312)
+.+.||+...++.||+++. +++|-+.=| +|+. ++.+||..++++. ..++.||+.|+ |+.|..
T Consensus 12 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~ 81 (92)
T 3ztg_A 12 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKN 81 (92)
T ss_dssp TTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred cCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence 4678999999999999774 888877643 3443 5689999999984 56899999999 999987
No 58
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.63 E-value=0.046 Score=48.28 Aligned_cols=55 Identities=15% Similarity=0.141 Sum_probs=30.4
Q ss_pred chHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 225 GAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 225 g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
++++.|+.++++. ++..+..|+.+|..+.... ..+++.|+++|.+.+..+...++
T Consensus 159 ~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~------------~~~~~~L~~~l~d~~~~vR~~A~ 213 (280)
T 1oyz_A 159 ATIPLLINLLKDP-NGDVRNWAAFAININKYDN------------SDIRDCFVEMLQDKNEEVRIEAI 213 (280)
T ss_dssp CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCC------------HHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCc------------HHHHHHHHHHhcCCCHHHHHHHH
Confidence 4566666666655 5566666666665553211 12566777777655444433333
No 59
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=96.57 E-value=0.062 Score=47.41 Aligned_cols=117 Identities=5% Similarity=-0.021 Sum_probs=77.0
Q ss_pred CchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCC
Q 021417 104 DQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASS 183 (312)
Q Consensus 104 d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~ 183 (312)
++..+..++..|..+....... ...+++.|...|.+. +..++..|+.+|..+. .++.
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~~~-----~~~~~~~L~~~l~d~-------~~~vR~~a~~aL~~~~-----------~~~~ 160 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNPIY-----SPKIVEQSQITAFDK-------STNVRRATAFAISVIN-----------DKAT 160 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHTTCS-------CHHHHHHHHHHHHTC--------------CC
T ss_pred CHHHHHHHHHHHHHHhccCCcc-----cHHHHHHHHHHhhCC-------CHHHHHHHHHHHHhcC-----------CHHH
Confidence 3444445666665555432211 123567777777543 3567888888887652 2458
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhh
Q 021417 184 MHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMI 254 (312)
Q Consensus 184 l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~ 254 (312)
++.++..|++.+...|..|+..|..+... .+.+++.|+.++.++ ++..+..|+.+|.++.
T Consensus 161 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~~~L~~~l~d~-~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 161 IPLLINLLKDPNGDVRNWAAFAININKYD----------NSDIRDCFVEMLQDK-NEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHTCC----------CHHHHHHHHHHTTCS-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhccC----------cHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhC
Confidence 89999999988989999999888776311 125677888888776 6777788888877764
No 60
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.16 E-value=0.19 Score=46.90 Aligned_cols=181 Identities=12% Similarity=0.143 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHhcccCCCchhhhHHHHHHHH-HHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 021417 87 VEVLEINSKITAACKSEDQTGGRDLVAKIKK-WIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLT 165 (312)
Q Consensus 87 ~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~-lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~ 165 (312)
-++.+++.+|.++ +..+...++.+|+. +.++-+....+ ++.|.+..|+.+.... ....+..+|++|.
T Consensus 118 ~ra~~iiekL~~~----~~~~lr~aLfsLk~~~q~D~~Fa~EF-I~~~GL~~Li~vi~~~-------~gN~q~Y~L~AL~ 185 (339)
T 3dad_A 118 VRVNAILEKLYSS----SGPELRRSLFSLKQIFQEDKDLVPEF-VHSEGLSCLIRVGAAA-------DHNYQSYILRALG 185 (339)
T ss_dssp HHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHTCTTHHHHH-HHTTHHHHHHHHHTTS-------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC----CcHHHHHHHHHHHHHhhcchHHHHHH-HHhccHHHHHHHHHhc-------ChHHHHHHHHHHH
Confidence 4788899999763 44566789999999 55455544444 4555588888988554 2457999999999
Q ss_pred hcCCCChhHHH-hccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhh-------hhc--hHHHHHHhhc
Q 021417 166 LLFPLAGEALT-YLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLE-------IEG--AIESLYTLIK 235 (312)
Q Consensus 166 ~L~~~~~e~k~-~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~-------~~g--~i~~LV~ll~ 235 (312)
.|.. ...... ++..+.+|..+..++.+.....-..|..+|+.+...++.+...+-+ ..| .+.-||.+|.
T Consensus 186 ~LM~-~v~Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~ 264 (339)
T 3dad_A 186 QLML-FVDGMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILE 264 (339)
T ss_dssp HHTT-SHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHT
T ss_pred HHHh-ccccccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHh
Confidence 8854 455554 4557789999999999777777778999999887655433322211 111 3679999997
Q ss_pred --CCCChHHHHHHHHHHHHhhcCCCCCcchHHHH----HHcCcHHHHHHHhh
Q 021417 236 --EPICPTATEASFVVVYHMITSASAADKPIQKF----VDMGLVSLLLETLV 281 (312)
Q Consensus 236 --~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~----V~~G~V~~LvelL~ 281 (312)
++.++.....|+..+-.+...-+. .+.+..+ -+.|.-..+..+|.
T Consensus 265 ~~~~~D~elq~~amtLIN~lL~~apd-~d~~~di~d~Le~~gi~~~i~r~l~ 315 (339)
T 3dad_A 265 EKNGADPELLVYTVTLINKTLAALPD-QDSFYDVTDALEQQGMEALVQRHLG 315 (339)
T ss_dssp TTTSCCHHHHHHHHHHHHHHHHHCSS-HHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred ccCCCCHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHccHHHHHHHHHh
Confidence 333667777777666555332100 1223333 34566666666664
No 61
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.03 E-value=0.001 Score=53.05 Aligned_cols=61 Identities=13% Similarity=-0.117 Sum_probs=47.9
Q ss_pred chhhhhhHHHhhhhccc-chhhHHhh-HHHHhh-CCCcccccccccCC-CCccccchhh--hhhhch
Q 021417 7 VRLINLAKWLVESAWVA-LRLFQERC-EEELLW-AAEMIKIKAQDLKG-KEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-~~~~~er~-~~e~~~-G~~TCP~T~Q~L~~-~~l~PN~tLr--Iq~Wc~ 67 (312)
.+.||+-..++.+|+++ =+++|-+. ...|+. ++.+||..++++.. .++.||+.|+ |+.|.-
T Consensus 52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 35688888888999966 67766665 334444 56699999999986 7899999999 888875
No 62
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=95.81 E-value=0.031 Score=44.09 Aligned_cols=87 Identities=8% Similarity=-0.001 Sum_probs=67.7
Q ss_pred HHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccch
Q 021417 135 VSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDH 214 (312)
Q Consensus 135 v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~ 214 (312)
++.|+.+|.+. +..++..|+.+|..+. + +..++.++..|+..+...|..|+..|-.+.
T Consensus 44 ~~~L~~~L~d~-------~~~vR~~A~~aL~~~~--~---------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~---- 101 (131)
T 1te4_A 44 FEPLLESLSNE-------DWRIRGAAAWIIGNFQ--D---------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG---- 101 (131)
T ss_dssp HHHHHHGGGCS-------CHHHHHHHHHHHGGGC--S---------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCC-------CHHHHHHHHHHHHhcC--C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----
Confidence 68888888643 3678999999998762 1 236889999999999999999999888762
Q ss_pred HHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHH
Q 021417 215 RRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYH 252 (312)
Q Consensus 215 ~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~ 252 (312)
. +.+++.|+.++++. ++..+..|..+|..
T Consensus 102 -------~-~~a~~~L~~~l~d~-~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 102 -------G-ERVRAAMEKLAETG-TGFARKVAVNYLET 130 (131)
T ss_dssp -------S-HHHHHHHHHHTTSC-CTHHHHHHHHHGGG
T ss_pred -------c-HHHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence 2 25688899999876 77788888877643
No 63
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=95.72 E-value=0.0018 Score=53.73 Aligned_cols=61 Identities=10% Similarity=-0.203 Sum_probs=47.5
Q ss_pred chhhhhhHHHhhhhccc-chhhHHhh-HHHHhh-CCCcccccccccCCC-Cccccchhh--hhhhch
Q 021417 7 VRLINLAKWLVESAWVA-LRLFQERC-EEELLW-AAEMIKIKAQDLKGK-EVKVNTSLL--YQQTKF 67 (312)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-~~~~~er~-~~e~~~-G~~TCP~T~Q~L~~~-~l~PN~tLr--Iq~Wc~ 67 (312)
.+.|++-..++.+|+++ =+++|-+. ...|+. ++.+||+.++++... .+.||..|+ |+.|..
T Consensus 78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 45688888889999976 66666654 444444 556999999999977 899999999 887775
No 64
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.60 E-value=0.15 Score=44.22 Aligned_cols=167 Identities=13% Similarity=0.132 Sum_probs=108.8
Q ss_pred CCchhhhHHHHHHHHHHHhchhh-hHHHHhcCCHHHHHHHhh-cccccccchhHHHHHHHHHHHHhcCCCChhHHHhccC
Q 021417 103 EDQTGGRDLVAKIKKWIKESERN-KRCIVDYGAVSVLAAAFE-SFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGS 180 (312)
Q Consensus 103 ~d~~~~~~al~~l~~lak~s~~n-R~~l~~aG~v~~Lv~lL~-s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~ 180 (312)
.+...+.+|+..|..+.+..... ...+ ..+++.|...|. .. +..++..|+.+|..|+. ..+..+..
T Consensus 27 ~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~-------~~~V~~~a~~~l~~la~---~l~~~~~~ 94 (242)
T 2qk2_A 27 KKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDS-------NVVLVAMAGKCLALLAK---GLAKRFSN 94 (242)
T ss_dssp SSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCS-------CHHHHHHHHHHHHHHHH---HHGGGGHH
T ss_pred CCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCC-------CHHHHHHHHHHHHHHHH---HHhhhHHH
Confidence 34567778999999999873221 0001 134566666663 32 46788888888887742 11222211
Q ss_pred --CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCC
Q 021417 181 --ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSAS 258 (312)
Q Consensus 181 --~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~ 258 (312)
...++.+...|+..+...|..|..+|..+.... ..+.+++.|...+++. +++.+..++..|..+....+
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYAST--------SLEAQQESIVESLSNK-NPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS--------CHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcC
Confidence 347899999999889999999999999996431 1235788888999876 88999999999999654320
Q ss_pred CCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 259 AADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 259 ~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
. +..-..... -.++.|+++|.|....+-+.|.
T Consensus 166 ~-~~~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~ 197 (242)
T 2qk2_A 166 P-TALNKKLLK-LLTTSLVKTLNEPDPTVRDSSA 197 (242)
T ss_dssp G-GGCCHHHHH-HHHHHHHHHHTSSCHHHHHHHH
T ss_pred C-CCccHHHHH-HHHHHHHHHhcCCChHHHHHHH
Confidence 0 001112222 4788899999776554544444
No 65
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=95.54 E-value=0.0015 Score=49.78 Aligned_cols=61 Identities=11% Similarity=0.013 Sum_probs=49.1
Q ss_pred chhhhhhHHHhhhhccc--chhhHHh-hHHHHhhCCCcccccccccCCCCccccchhh--hhhhch
Q 021417 7 VRLINLAKWLVESAWVA--LRLFQER-CEEELLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 7 ~~~~~~~~~~~~~~~~~--~~~~~er-~~~e~~~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc~ 67 (312)
.+.|+.-...+.+|++. =+++|-+ +...|+..+.+||..++++...++.||+.|+ |+.|..
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~ 87 (99)
T 2y43_A 22 LLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNF 87 (99)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence 35688888888899853 5665544 4556777889999999999888899999999 888886
No 66
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=95.50 E-value=0.099 Score=53.88 Aligned_cols=158 Identities=8% Similarity=0.072 Sum_probs=101.8
Q ss_pred CCchhhhHHHHHHHHHHHhchhhhHHHHh-------cCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHH
Q 021417 103 EDQTGGRDLVAKIKKWIKESERNKRCIVD-------YGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEAL 175 (312)
Q Consensus 103 ~d~~~~~~al~~l~~lak~s~~nR~~l~~-------aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k 175 (312)
++...+..++..+..++++... .+.. .++++.|+..+.+. +.+++..|+.+|..+..... .
T Consensus 140 ~~~~~r~~al~~L~~i~~~~~~---~~~~~~~~~~~~~il~~l~~~l~~~-------~~~vR~~A~~aL~~~~~~~~--~ 207 (852)
T 4fdd_A 140 EDYNTCEGAFGALQKICEDSAE---ILDSDVLDRPLNIMIPKFLQFFKHS-------SPKIRSHAVACVNQFIISRT--Q 207 (852)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTT---HHHHCSSSSCHHHHHHHHTTTTTCS-------SHHHHHHHHHHHHTTTTTTC--H
T ss_pred CCHHHHHHHHHHHHHHHHHhHH---HhchhhhcchHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHhccc--H
Confidence 3445556677777788776542 2221 12344444444322 46789999999987754222 1
Q ss_pred Hhcc-CCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhh
Q 021417 176 TYLG-SASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMI 254 (312)
Q Consensus 176 ~~l~-~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~ 254 (312)
.... -...++.+...+..++.+.|..|+..|..++...+..... ..+++++.+++++++. ++..+..|+.++..++
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~--~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~ 284 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLP--HMHNIVEYMLQRTQDQ-DENVALEACEFWLTLA 284 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGG--GHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHH--HHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHh
Confidence 2211 1357888889898899999999999999997654432211 1236788888888876 7788999999999998
Q ss_pred cCCCCCcchHHHHHHc---CcHHHHHHHh
Q 021417 255 TSASAADKPIQKFVDM---GLVSLLLETL 280 (312)
Q Consensus 255 ~~~~~~~~Nr~~~V~~---G~V~~LvelL 280 (312)
... ...+.++. ..++.|++.+
T Consensus 285 ~~~-----~~~~~~~~~~~~l~p~ll~~l 308 (852)
T 4fdd_A 285 EQP-----ICKDVLVRHLPKLIPVLVNGM 308 (852)
T ss_dssp TST-----THHHHHTTTHHHHHHHHHHHT
T ss_pred cch-----hHHHHHHHHHHHHHHHHHHHc
Confidence 753 22233322 3566666666
No 67
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.24 E-value=0.23 Score=43.03 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=88.2
Q ss_pred CchhhhHHHHHHHHHHHhchhhhHHHHh--cCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCC
Q 021417 104 DQTGGRDLVAKIKKWIKESERNKRCIVD--YGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSA 181 (312)
Q Consensus 104 d~~~~~~al~~l~~lak~s~~nR~~l~~--aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~ 181 (312)
+...+..|+..+..+++.-.. .+.. .-++|.|...+... +..+++.|..+|..+.... .. .
T Consensus 70 ~~~V~~~a~~~l~~la~~l~~---~~~~~~~~ilp~ll~~l~d~-------~~~vr~~a~~aL~~~~~~~-~~------~ 132 (242)
T 2qk2_A 70 NVVLVAMAGKCLALLAKGLAK---RFSNYASACVPSLLEKFKEK-------KPNVVTALREAIDAIYAST-SL------E 132 (242)
T ss_dssp CHHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHHGGGCC-------CHHHHHHHHHHHHHHHTTS-CH------H
T ss_pred CHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHHcC-CH------H
Confidence 334445677777777754321 1111 12566666666433 3567888888887764311 11 2
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chH--HHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcC
Q 021417 182 SSMHCMVWFLKSGDLSRRRNTVLVLREVISS-DHR--RVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 182 ~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~-~~~--~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~ 256 (312)
..++.+...|++.+...|.+++..|..+... .+. ....+ +.+++.|+.++.|. .+..++.|..+|..++..
T Consensus 133 ~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l---~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 133 AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL---KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH---HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH---HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 3678888999999999999999999996433 222 12233 35899999999887 888999999999998754
No 68
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=94.95 E-value=0.15 Score=49.21 Aligned_cols=136 Identities=10% Similarity=0.036 Sum_probs=87.3
Q ss_pred CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCC-ChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Q 021417 134 AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPL-AGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISS 212 (312)
Q Consensus 134 ~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~-~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~ 212 (312)
++|.+..+|... +..+++.|+..|..+... ..+ .. -...++.+..++++.+...|..|+.++..++..
T Consensus 442 l~~~l~~~l~d~-------~~~Vr~~a~~~l~~l~~~~~~~--~~--~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~ 510 (588)
T 1b3u_A 442 LNSLCMAWLVDH-------VYAIREAATSNLKKLVEKFGKE--WA--HATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV 510 (588)
T ss_dssp HHHHHHHGGGCS-------SHHHHHHHHHHHHHHHHHHCHH--HH--HHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-------cHHHHHHHHHHHHHHHHHhCch--hH--HHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh
Confidence 345555555332 356888888887766321 111 01 134678888877778899999999999988633
Q ss_pred chHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhh
Q 021417 213 DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKP 291 (312)
Q Consensus 213 ~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~a 291 (312)
-+. ... .+.+++.|++++++. ++..+..++.+|..++..- +. .......++.|.+++.|.+..+.+.|
T Consensus 511 ~~~--~~~--~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~---~~---~~~~~~~~p~l~~l~~d~d~~vr~~a 578 (588)
T 1b3u_A 511 CGQ--DIT--TKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPIL---DN---STLQSEVKPILEKLTQDQDVDVKYFA 578 (588)
T ss_dssp HHH--HHH--HHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGS---CH---HHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred cCH--HHH--HHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHHh---ch---hhhHHHHHHHHHHHcCCCchhHHHHH
Confidence 111 111 136889999999887 7888889999999998653 22 23334566677776666555444443
No 69
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=94.59 E-value=0.35 Score=43.15 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 021417 89 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 168 (312)
Q Consensus 89 v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~ 168 (312)
+..++.++-...+..|.-....|++-|+.+-..-+-...++.. ++.+|.+++.+. +.-..++|...|-.|.
T Consensus 73 ~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~dlik~~-------~~il~~eaae~Lgklk 143 (265)
T 3b2a_A 73 LERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESP-------DDMMRIETIDVLSKLQ 143 (265)
T ss_dssp HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHHHTTSC-------CHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHHhcCC-------CchHHHHHHHHhCcCC
Confidence 3444444433333344433345555555555554444444443 245666666643 2345677777777662
Q ss_pred CCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHH
Q 021417 169 PLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFV 248 (312)
Q Consensus 169 ~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~ 248 (312)
+.+ . .++.+..+..++.+.+.+.|..|.+++.++++.+++ ++.+ ++++.++-.+|+.. +|...+-|+.
T Consensus 144 v~~-~------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D-~~i~---~~I~~eI~elL~~e-D~~l~e~aLd 211 (265)
T 3b2a_A 144 PLE-D------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSAD-SGHL---TLILDEIPSLLQND-NEFIVELALD 211 (265)
T ss_dssp BSC-C------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSS-CCCG---GGTTTTHHHHHTCS-CHHHHHHHHH
T ss_pred ccc-c------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCC-HHHH---HHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 211 1 234677788888888999999999999999876542 2233 35778888888877 8999999999
Q ss_pred HHHHhhcCC
Q 021417 249 VVYHMITSA 257 (312)
Q Consensus 249 aL~~L~~~~ 257 (312)
+|..+.+.+
T Consensus 212 ~Le~ils~p 220 (265)
T 3b2a_A 212 VLEKALSFP 220 (265)
T ss_dssp HHHHHTTSC
T ss_pred HHHHHHcCc
Confidence 999998774
No 70
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=94.48 E-value=0.26 Score=50.76 Aligned_cols=171 Identities=14% Similarity=0.153 Sum_probs=105.7
Q ss_pred CchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhH--HHhccC-
Q 021417 104 DQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEA--LTYLGS- 180 (312)
Q Consensus 104 d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~--k~~l~~- 180 (312)
++..+..+..-+..+++....+ ...++++.|+..+.+. +..+++.++.+|..++....+. +..+..
T Consensus 103 ~~~vr~~~a~~i~~ia~~~~~~----~wp~ll~~L~~~l~~~-------~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~ 171 (852)
T 4fdd_A 103 SPLIRATVGILITTIASKGELQ----NWPDLLPKLCSLLDSE-------DYNTCEGAFGALQKICEDSAEILDSDVLDRP 171 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHTTTT----TCTTHHHHHHHHHSCS-------SHHHHHHHHHHHHHHHHHHTTHHHHCSSSSC
T ss_pred CHHHHHHHHHHHHHHHHhcCcc----ccHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHHHhHHHhchhhhcch
Confidence 3344455677777777755221 1246888888888654 2467888888887764211111 111111
Q ss_pred -CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCC
Q 021417 181 -ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASA 259 (312)
Q Consensus 181 -~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~ 259 (312)
...++.++..|++.+.+.|..|+..|..+....+. ......+++++.|..++.++ ++..++.|..+|..++...
T Consensus 172 ~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~--~~~~~~~~~l~~l~~~~~d~-~~~vr~~a~~~L~~l~~~~-- 246 (852)
T 4fdd_A 172 LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ--ALMLHIDSFIENLFALAGDE-EPEVRKNVCRALVMLLEVR-- 246 (852)
T ss_dssp HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH--HHHTSHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHhC--
Confidence 23566677777778899999999999877543221 12222346889999998877 8889999999999998653
Q ss_pred CcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 260 ADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 260 ~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
+..-...+ .+.++.+++.+.+.+..+...++
T Consensus 247 -~~~~~~~l-~~l~~~l~~~~~~~~~~vr~~a~ 277 (852)
T 4fdd_A 247 -MDRLLPHM-HNIVEYMLQRTQDQDENVALEAC 277 (852)
T ss_dssp -HHHHGGGH-HHHHHHHHHHHTCSSHHHHHHHH
T ss_pred -HHHHHHHH-HHHHHHHHHHccCCcHHHHHHHH
Confidence 11111111 13677777777665555555554
No 71
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=94.46 E-value=0.79 Score=44.06 Aligned_cols=160 Identities=13% Similarity=0.038 Sum_probs=98.4
Q ss_pred CchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCC-ChhHHHhccCCC
Q 021417 104 DQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPL-AGEALTYLGSAS 182 (312)
Q Consensus 104 d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~-~~e~k~~l~~~~ 182 (312)
++..+..|+..+..+++..... .....++|.|..++... +..++..|+..|..++.. .++. ..+.
T Consensus 177 ~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~-------~~~vr~~a~~~l~~l~~~~~~~~----~~~~ 242 (588)
T 1b3u_A 177 TPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDE-------QDSVRLLAVEACVNIAQLLPQED----LEAL 242 (588)
T ss_dssp CHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCS-------CHHHHTTHHHHHHHHHHHSCHHH----HHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCC-------cHHHHHHHHHHHHHHHHhCCHHH----HHHH
Confidence 4444556666666666644321 11235667777766432 246777777777665321 1111 0123
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcc
Q 021417 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 262 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~ 262 (312)
.++.+..++...+...|..|+..|-.++...+. +.. .+.+++.++.++++. ++..++.|..+|-.++..-+ +.
T Consensus 243 ~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~--~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~--~~ 315 (588)
T 1b3u_A 243 VMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EIT--KTDLVPAFQNLMKDC-EAEVRAAASHKVKEFCENLS--AD 315 (588)
T ss_dssp THHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHH--HHTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHTSC--TT
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccc--hhHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHhC--hh
Confidence 678888888888999999999999998643111 111 136889999999887 78888899999999876431 12
Q ss_pred hHHHHHHcCcHHHHHHHhhhcc
Q 021417 263 PIQKFVDMGLVSLLLETLVDAQ 284 (312)
Q Consensus 263 Nr~~~V~~G~V~~LvelL~~~~ 284 (312)
.+..-.-...++.+.+++.+.+
T Consensus 316 ~~~~~~~~~l~p~l~~~l~d~~ 337 (588)
T 1b3u_A 316 CRENVIMSQILPCIKELVSDAN 337 (588)
T ss_dssp THHHHHHHTHHHHHHHHHTCSC
T ss_pred hhhhHHHHHHHHHHHHHhcCCC
Confidence 2222223345666666666543
No 72
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=94.30 E-value=0.51 Score=43.99 Aligned_cols=121 Identities=12% Similarity=0.181 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc
Q 021417 156 VLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK 235 (312)
Q Consensus 156 v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~ 235 (312)
....+|--|..+...|.+--.-..+.+.+.+|+.+...++-....++.+++.+|....+..-..+ +.+.+|.-|+.++.
T Consensus 134 ~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv-s~~~fI~~lyslv~ 212 (339)
T 3dad_A 134 ELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV-AHSDTIQWLYTLCA 212 (339)
T ss_dssp HHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH-HCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh-CCHHHHHHHHHHHc
Confidence 45566666654212343333334456789999999999999999999999999975534333455 45689999999998
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcC----------cHHHHHHHhh
Q 021417 236 EPICPTATEASFVVVYHMITSASAADKPIQKFVDMG----------LVSLLLETLV 281 (312)
Q Consensus 236 ~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G----------~V~~LvelL~ 281 (312)
. ..+...+.|++.|..+|.+. +.|...+.++= ..+.|+++|.
T Consensus 213 s-~~~~V~k~AL~LL~v~V~~s---e~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~ 264 (339)
T 3dad_A 213 S-LSRLVVKTALKLLLVFVEYS---ENNAPLFIRAVNSVASTTGAPPWANLVSILE 264 (339)
T ss_dssp C-SCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHCCCTTHHHHHHHT
T ss_pred C-ccHHHHHHHHHHHHHHHccC---cccchHHHHHHHHhhhccCCCcHHHHHHHHh
Confidence 5 47889999999999999875 23554443321 3779999997
No 73
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=93.95 E-value=0.24 Score=49.13 Aligned_cols=161 Identities=11% Similarity=0.058 Sum_probs=101.1
Q ss_pred CCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCC
Q 021417 103 EDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSAS 182 (312)
Q Consensus 103 ~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~ 182 (312)
.++..+..|+..+..+.+.++. .+...|+++.|..+|.+. +..|+..|+.+|..+...+.+....-..++
T Consensus 133 ~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~-------d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~ 202 (591)
T 2vgl_B 133 EDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADS-------NPMVVANAVAALSEISESHPNSNLLDLNPQ 202 (591)
T ss_dssp SCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCS-------CHHHHHHHHHHHHHHTTSCCSCCSCCCHHH
T ss_pred CChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCC-------ChhHHHHHHHHHHHHHhhCCCccchhccHH
Confidence 4566667788888888775542 344457889999999643 467899999999988653322110101234
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcc
Q 021417 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 262 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~ 262 (312)
.+..++..|...+.-.+.....+|..+...++.. ...+++.+..++++. ++.....|..++.++...-+. ..
T Consensus 203 ~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~------~~~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~~~~~-~~ 274 (591)
T 2vgl_B 203 NINKLLTALNECTEWGQIFILDCLSNYNPKDDRE------AQSICERVTPRLSHA-NSAVVLSAVKVLMKFLELLPK-DS 274 (591)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH------HHHHHHHHTTCSCSS-TTHHHHHHHHHHHHSCCSCCB-TT
T ss_pred HHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH------HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhccCC-CH
Confidence 5777777777777777776666666554332211 235788888888876 778888899999998641000 01
Q ss_pred hHHHHHHcCcHHHHHHHhh
Q 021417 263 PIQKFVDMGLVSLLLETLV 281 (312)
Q Consensus 263 Nr~~~V~~G~V~~LvelL~ 281 (312)
...+.+-..++++|+.++.
T Consensus 275 ~~~~~~~~~~~~~L~~L~~ 293 (591)
T 2vgl_B 275 DYYNMLLKKLAPPLVTLLS 293 (591)
T ss_dssp BSHHHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 1222233345677776654
No 74
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=93.82 E-value=0.12 Score=40.62 Aligned_cols=82 Identities=10% Similarity=0.073 Sum_probs=62.8
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcc
Q 021417 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 262 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~ 262 (312)
.++.++..|++.+...|..|+.+|-.+. . +++++.|+.++++. ++..+..|+.+|-.+...
T Consensus 43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~-----------~-~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~~------ 103 (131)
T 1te4_A 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQ-----------D-ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGGE------ 103 (131)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGC-----------S-HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCSH------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcC-----------C-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCcH------
Confidence 4799999999999999999998887652 2 25688899999877 888899999998887421
Q ss_pred hHHHHHHcCcHHHHHHHhhhcccchhhhh
Q 021417 263 PIQKFVDMGLVSLLLETLVDAQRSLCEKP 291 (312)
Q Consensus 263 Nr~~~V~~G~V~~LvelL~~~~~~~~e~a 291 (312)
.+++.|+++|.+.+..+...+
T Consensus 104 --------~a~~~L~~~l~d~~~~vr~~A 124 (131)
T 1te4_A 104 --------RVRAAMEKLAETGTGFARKVA 124 (131)
T ss_dssp --------HHHHHHHHHTTSCCTHHHHHH
T ss_pred --------HHHHHHHHHHhCCCHHHHHHH
Confidence 257889999976555444433
No 75
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=93.76 E-value=0.25 Score=49.05 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=57.8
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcc
Q 021417 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 262 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~ 262 (312)
.+..+.+-|.+.+...|..|...|..+. .++ .. +.+++.+.+++.+. +|..++.|..+|++++... ++
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~---~~---~~l~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~---p~ 154 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIR--VDK---IT---EYLCEPLRKCLKDE-DPYVRKTAAVCVAKLHDIN---AQ 154 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCC--SGG---GH---HHHHHHHHHHSSCS-CHHHHHHHHHHHHHHHHSS---CC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHH---HH---HHHHHHHHHHcCCC-ChHHHHHHHHHHHHHHhhC---hh
Confidence 3556666677777777777766665552 122 11 23566677777765 7777788888888886642 11
Q ss_pred hHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 263 PIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 263 Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
.+.+.|.++.|.++|.|.+..+...|+
T Consensus 155 ---~~~~~~~~~~l~~lL~d~d~~V~~~A~ 181 (591)
T 2vgl_B 155 ---MVEDQGFLDSLRDLIADSNPMVVANAV 181 (591)
T ss_dssp ---CHHHHHHHHHHHHTTSCSCHHHHHHHH
T ss_pred ---hcccccHHHHHHHHhCCCChhHHHHHH
Confidence 222346777777777665555555554
No 76
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=93.76 E-value=2.2 Score=42.50 Aligned_cols=158 Identities=12% Similarity=0.133 Sum_probs=100.9
Q ss_pred CchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCC
Q 021417 104 DQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASS 183 (312)
Q Consensus 104 d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~ 183 (312)
++-.+...++-++.++..++... ..+.+.|..++....... ..+..+.-+|+.++..+.. +...+. .+
T Consensus 247 ~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~~-~~~~aV~~ea~~~i~~l~~-~~~l~~-----~a 314 (618)
T 1w63_A 247 DPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETSK-NVGNAILYETVLTIMDIKS-ESGLRV-----LA 314 (618)
T ss_dssp CHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCSS-THHHHHHHHHHHHHHHSCC-CHHHHH-----HH
T ss_pred CChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhcccccc-chHHHHHHHHHHHHHhcCC-CHHHHH-----HH
Confidence 44555567777777776554321 235667777764321000 1234567777777776632 322222 36
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcch
Q 021417 184 MHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKP 263 (312)
Q Consensus 184 l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~N 263 (312)
+..+..+|.+.+.+.|.-|...|..+....+ ..+ ......++..+.++ ++..++.|+.+|+.++.. .|
T Consensus 315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~---~~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~-----~n 382 (618)
T 1w63_A 315 INILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAV---QRHRSTIVDCLKDL-DVSIKRRAMELSFALVNG-----NN 382 (618)
T ss_dssp HHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHH---GGGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCS-----SS
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHH---HHHHHHHHHHccCC-ChhHHHHHHHHHHHHccc-----cc
Confidence 7788888998888999999999988864423 233 23567788888877 788899999999999886 47
Q ss_pred HHHHHHcCcHHHHHHHhhhcccchhhh
Q 021417 264 IQKFVDMGLVSLLLETLVDAQRSLCEK 290 (312)
Q Consensus 264 r~~~V~~G~V~~LvelL~~~~~~~~e~ 290 (312)
...+ +..|++.+.+.+..+...
T Consensus 383 v~~i-----v~eL~~~l~~~d~e~r~~ 404 (618)
T 1w63_A 383 IRGM-----MKELLYFLDSCEPEFKAD 404 (618)
T ss_dssp THHH-----HHHHHHHHHHCCHHHHHH
T ss_pred HHHH-----HHHHHHHHHhCCHHHHHH
Confidence 5554 467777776554433333
No 77
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.72 E-value=1.2 Score=39.10 Aligned_cols=139 Identities=8% Similarity=0.048 Sum_probs=85.3
Q ss_pred hhhhHHHHHHHHHHHhch--hhh-HHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhcc--C
Q 021417 106 TGGRDLVAKIKKWIKESE--RNK-RCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLG--S 180 (312)
Q Consensus 106 ~~~~~al~~l~~lak~s~--~nR-~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~--~ 180 (312)
..+..|+.-|..+++.-. .-. .+... ++|.|+..+... ...+++.+..+|..++..-+ ..... -
T Consensus 76 ~v~~~A~~al~~la~~l~~~~f~~~y~~~--llp~ll~~l~dk-------k~~V~~aa~~al~~i~~~~~--~~~~~~~l 144 (249)
T 2qk1_A 76 QAVALAAQSVELICDKLKTPGFSKDYVSL--VFTPLLDRTKEK-------KPSVIEAIRKALLTICKYYD--PLASSGRN 144 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTSCHHHHHH--HHHHHHHGGGCC-------CHHHHHHHHHHHHHHHHHSC--TTCTTCTT
T ss_pred HHHHHHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHcCC-------CHHHHHHHHHHHHHHHHHcc--ccccCCcH
Confidence 334557777777774221 111 22221 456666666433 34567776666665532100 01110 1
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHH-HHHhhhh-hchHHHHHHhhcCCCChHHHHHHHHHHHHhhcC
Q 021417 181 ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRR-VNMFLEI-EGAIESLYTLIKEPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 181 ~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~-~~~Ig~~-~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~ 256 (312)
...++.+...|++.++..|+.++..|..+....... ....-.. +.+++.|.+++.|. ++..+..|..+|-.++..
T Consensus 145 ~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 145 EDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 247888999999999999999999999987432210 1111123 47899999999887 888999999999888643
No 78
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.56 E-value=0.35 Score=42.71 Aligned_cols=171 Identities=6% Similarity=0.058 Sum_probs=110.3
Q ss_pred CchhhhHHHHHHHH-HHHhchhhhHHHH-hc---CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHH-Hh
Q 021417 104 DQTGGRDLVAKIKK-WIKESERNKRCIV-DY---GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEAL-TY 177 (312)
Q Consensus 104 d~~~~~~al~~l~~-lak~s~~nR~~l~-~a---G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k-~~ 177 (312)
+..++.+|+..|.. +..... +... .. .++..|...+.. +.+..++..|+.+|..|+ ...+ ..
T Consensus 29 ~w~eRk~al~~L~~~~~~~~~---~i~~~~~~~~~~~~~L~~~l~~------D~n~~v~~~A~~al~~la---~~l~~~~ 96 (249)
T 2qk1_A 29 KWKDRVEALEEFWDSVLSQTK---KLKSTSQNYSNLLGIYGHIIQK------DANIQAVALAAQSVELIC---DKLKTPG 96 (249)
T ss_dssp SHHHHHHHHHHHHHHTGGGCC---CBCCTTCCCHHHHHHHHHHHHH------CSCHHHHHHHHHHHHHHH---HHHCTTT
T ss_pred CHHHHHHHHHHHHHHHHhcCC---ccccCcccHHHHHHHHHHHhcc------CCCHHHHHHHHHHHHHHH---Hhccccc
Confidence 45677789999988 775432 1210 11 245555555521 125677888888888774 2222 22
Q ss_pred cc-C--CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHh-hhhhchHHHHHHhhcCCCChHHHHHHHHHHHHh
Q 021417 178 LG-S--ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMF-LEIEGAIESLYTLIKEPICPTATEASFVVVYHM 253 (312)
Q Consensus 178 l~-~--~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~I-g~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L 253 (312)
+. . ...++.++..++......|..|..+|..+....+. ... +..+.+++.|...+++. +++.+..++.+|..+
T Consensus 97 f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~--~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 97 FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP--LASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNAS 173 (249)
T ss_dssp SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT--TCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc--cccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHH
Confidence 22 1 23688999989888888888888888888632211 111 11346889999999877 889999999999999
Q ss_pred hcCCCCCcchHHH---HHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 254 ITSASAADKPIQK---FVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 254 ~~~~~~~~~Nr~~---~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
+... +..-.. .+.-..++.|.++|.|.++.+-+.|.
T Consensus 174 ~~~~---~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~ 212 (249)
T 2qk1_A 174 MKEE---KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGF 212 (249)
T ss_dssp HHHC---CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHc---CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 7643 111122 23246899999999887766666655
No 79
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=93.24 E-value=1.7 Score=39.04 Aligned_cols=145 Identities=10% Similarity=0.106 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC-CChhHHHhccCCCCHHHHH
Q 021417 110 DLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP-LAGEALTYLGSASSMHCMV 188 (312)
Q Consensus 110 ~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~-~~~e~k~~l~~~~~l~~lv 188 (312)
.|+.-++.+|. +++-|..+.++.+.-.|-.+|...+.. .....++-.+|.++..|.. +|.+.-.-+.+.+.+|...
T Consensus 75 naLaLlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~--r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 75 NALALLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKT--RPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCS--HHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHc-CcchhhHHHHccchHHhhhhhccccCC--CcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 47777888887 445888999999988888888654321 1112344556766666543 3455555556778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHhccchHHH------HHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCC
Q 021417 189 WFLKSGDLSRRRNTVLVLREVISSDHRRV------NMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 257 (312)
Q Consensus 189 ~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~------~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~ 257 (312)
+.+..|+--+|.-|+-++..+...+.... +..-....++..+|.-+.+..+++..|..+.+-..|+..+
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 99999999999999999999976543111 1111111234444433334449999999999999999874
No 80
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=93.08 E-value=0.018 Score=44.45 Aligned_cols=62 Identities=10% Similarity=-0.030 Sum_probs=48.7
Q ss_pred cchhhhhhHHHhhhhcc--cchhhH-HhhHHHHhhCCCcccccccccCCC----Cccccchhh--hhhhch
Q 021417 6 HVRLINLAKWLVESAWV--ALRLFQ-ERCEEELLWAAEMIKIKAQDLKGK----EVKVNTSLL--YQQTKF 67 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~--~~~~~~-er~~~e~~~G~~TCP~T~Q~L~~~----~l~PN~tLr--Iq~Wc~ 67 (312)
+.+.||+-..++.+|++ +=+++| ..+...|+..+.+||.-++++... ++.||..|+ |+.|..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 35678888888999996 455655 445556777779999999999865 789999999 887775
No 81
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=93.06 E-value=0.011 Score=42.99 Aligned_cols=56 Identities=11% Similarity=-0.109 Sum_probs=42.9
Q ss_pred cchhhhhhHHHhhhhccc-chhhHHh-hHHHHhh------CCCcccccccccCCCCccccchhh
Q 021417 6 HVRLINLAKWLVESAWVA-LRLFQER-CEEELLW------AAEMIKIKAQDLKGKEVKVNTSLL 61 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~er-~~~e~~~------G~~TCP~T~Q~L~~~~l~PN~tLr 61 (312)
+.+.|+.-...+.+|++. =+++|=+ +...|+. ++.+||.-++++...++.||+.|+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecw_A 18 EEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVA 81 (85)
T ss_dssp TTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCC
T ss_pred cCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHH
Confidence 356788888888999966 5555544 4433433 389999999999988999999987
No 82
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.94 E-value=0.018 Score=41.84 Aligned_cols=56 Identities=5% Similarity=-0.067 Sum_probs=42.4
Q ss_pred cchhhhhhHHHhhhhccc-chhhHHh-hHHHHhh------CCCcccccccccCCCCccccchhh
Q 021417 6 HVRLINLAKWLVESAWVA-LRLFQER-CEEELLW------AAEMIKIKAQDLKGKEVKVNTSLL 61 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~er-~~~e~~~------G~~TCP~T~Q~L~~~~l~PN~tLr 61 (312)
+.+.||+-...+++|++. =+++|=+ +-..|+. ++.+||.-++++...++.||+.|+
T Consensus 18 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecv_A 18 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVA 81 (85)
T ss_dssp CCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCC
T ss_pred CCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHH
Confidence 346788888888899866 5555544 4333322 589999999999988999999998
No 83
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=91.91 E-value=0.008 Score=43.39 Aligned_cols=56 Identities=7% Similarity=-0.155 Sum_probs=43.0
Q ss_pred cchhhhhhHHHhhhhccc-chhhHHhhHH-HHhh-------CCCcccccccccCCCCccccchhh
Q 021417 6 HVRLINLAKWLVESAWVA-LRLFQERCEE-ELLW-------AAEMIKIKAQDLKGKEVKVNTSLL 61 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~er~~~-e~~~-------G~~TCP~T~Q~L~~~~l~PN~tLr 61 (312)
+.+.||.-...+.+|++. =+++|=+.=+ .|+. ++.+||.-++++...++.||+.|+
T Consensus 11 ~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~ 75 (79)
T 2egp_A 11 EEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLA 75 (79)
T ss_dssp CCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSC
T ss_pred cCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHH
Confidence 346688888888999966 6666655433 3433 378999999999988999999997
No 84
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=91.78 E-value=0.022 Score=47.43 Aligned_cols=62 Identities=3% Similarity=-0.126 Sum_probs=46.7
Q ss_pred cchhhhhhHHHhhhhcc--cchhhHHhh-H-HHHhhCCCcccccccccCC-CCccccchhh--hhhhch
Q 021417 6 HVRLINLAKWLVESAWV--ALRLFQERC-E-EELLWAAEMIKIKAQDLKG-KEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~--~~~~~~er~-~-~e~~~G~~TCP~T~Q~L~~-~~l~PN~tLr--Iq~Wc~ 67 (312)
+.+.||.....+.+|++ +=+++|=+. . .|+..++.+||.-++++.. ..+.||..|+ |..|..
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 34679999999999985 355655444 3 3344569999999999964 4699999999 888875
No 85
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=91.70 E-value=1.8 Score=38.55 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=106.6
Q ss_pred CCchhhhHHHHHHHHHHHh--chhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC---CChhHHHh
Q 021417 103 EDQTGGRDLVAKIKKWIKE--SERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP---LAGEALTY 177 (312)
Q Consensus 103 ~d~~~~~~al~~l~~lak~--s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~---~~~e~k~~ 177 (312)
.|+..+..++.-|..+-|+ +.-+++.+.+ +.+.++.++.+. +..+.-.|+.+|-.|.. .+++.-.
T Consensus 45 kD~~vk~raL~~LeellK~~~~~l~~~~~e~--~Ld~iI~llk~~-------dEkval~A~r~L~~LLe~vpL~~~~y~- 114 (265)
T 3b2a_A 45 DDETTRLRAFVALGEILKRADSDLRMMVLER--HLDVFINALSQE-------NEKVTIKALRALGYLVKDVPMGSKTFL- 114 (265)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH--HHHHHHHTCCST-------THHHHHHHHHHHHHHHTTCCBCHHHHH-
T ss_pred cchHHHHHHHHHHHHHHHhccccccHHHHHH--HHHHHHHHHhcc-------chhHHHHHHHHHHHHHcCCCCCHHHHH-
Confidence 5667778899999999998 4334433333 567888888654 34677778877765532 2222211
Q ss_pred ccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCC
Q 021417 178 LGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 257 (312)
Q Consensus 178 l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~ 257 (312)
..+..+..++++++.-.+++|+-.+..+. ... ..++++.-|..++. +.+++..-+|+.+|.+++...
T Consensus 115 ----Kl~~aL~dlik~~~~il~~eaae~Lgklk-v~~-------~~~~V~~~l~sLl~-Skd~~vK~agl~~L~eia~~S 181 (265)
T 3b2a_A 115 ----KAAKTLVSLLESPDDMMRIETIDVLSKLQ-PLE-------DSKLVRTYINELVV-SPDLYTKVAGFCLFLNMLNSS 181 (265)
T ss_dssp ----HHHHHHHHHTTSCCHHHHHHHHHHHHHCC-BSC-------CCHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHhcCCCchHHHHHHHHhCcCC-ccc-------chHHHHHHHHHHHh-CCChhHHHHHHHHHHHhhccc
Confidence 24678888889999999999999999883 211 12355666777774 448999999999999998753
Q ss_pred CCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 258 SAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 258 ~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
. +.+ +-.+.+..+-++|...+.-+.|+||
T Consensus 182 ~--D~~----i~~~I~~eI~elL~~eD~~l~e~aL 210 (265)
T 3b2a_A 182 A--DSG----HLTLILDEIPSLLQNDNEFIVELAL 210 (265)
T ss_dssp S--SCC----CGGGTTTTHHHHHTCSCHHHHHHHH
T ss_pred C--CHH----HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 0 111 1123555666677655666777776
No 86
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=91.57 E-value=0.02 Score=45.03 Aligned_cols=62 Identities=5% Similarity=-0.203 Sum_probs=47.7
Q ss_pred cchhhhhhHHHhhhhccc-chhhHHhh-HHHH-hhCCCcccccccccCCCCccccchhh--hhhhch
Q 021417 6 HVRLINLAKWLVESAWVA-LRLFQERC-EEEL-LWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~er~-~~e~-~~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc~ 67 (312)
+.+.||+-..++.+|++. =+++|-+. ...| ..++.+||.-++++...++.||..++ |+++..
T Consensus 17 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v 83 (118)
T 3hct_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMV 83 (118)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEE
T ss_pred CCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHcccee
Confidence 346789999999999976 56655554 4344 44556999999999988899999998 887765
No 87
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.52 E-value=0.52 Score=47.11 Aligned_cols=111 Identities=19% Similarity=0.140 Sum_probs=81.3
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHH
Q 021417 153 HVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYT 232 (312)
Q Consensus 153 ~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ 232 (312)
+..++..|+.+|..+.. .+ + .+..++.+...|++.+...|..|+..+..+...+++ .+ +++++.|..
T Consensus 120 n~~vr~lAL~~L~~i~~--~~---~--~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~---~v---~~~~~~l~~ 186 (618)
T 1w63_A 120 TQFVQGLALCTLGCMGS--SE---M--CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE---LM---EMFLPATKN 186 (618)
T ss_dssp SSHHHHHHHHHHHHHCC--HH---H--HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG---GG---GGGGGGTTT
T ss_pred CHhHHHHHHHHHHhcCC--HH---H--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH---HH---HHHHHHHHH
Confidence 45678889999998742 22 1 134678899999999999999999999999755443 23 368888889
Q ss_pred hhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhh
Q 021417 233 LIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVD 282 (312)
Q Consensus 233 ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~ 282 (312)
+|.|. ++...-.|+.+|..++... ....... ...++.|+++|.+
T Consensus 187 lL~D~-d~~V~~~Al~~L~~i~~~~----~~~~~~~-~~~v~~l~~~L~~ 230 (618)
T 1w63_A 187 LLNEK-NHGVLHTSVVLLTEMCERS----PDMLAHF-RKLVPQLVRILKN 230 (618)
T ss_dssp STTCC-CHHHHHHHHHHHHHHCCSH----HHHHHHH-HTTHHHHHHHHHH
T ss_pred HhCCC-CHhHHHHHHHHHHHHHHhC----hHHHHHH-HHHHHHHHHHHHH
Confidence 99877 8888889999999998752 1111122 2577888877754
No 88
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=91.24 E-value=1.5 Score=40.61 Aligned_cols=170 Identities=6% Similarity=0.007 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccC--CCCHHH
Q 021417 109 RDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGS--ASSMHC 186 (312)
Q Consensus 109 ~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~--~~~l~~ 186 (312)
..+..-|..+++....... ..+++|.|+..+.+.. .+..+++.|+.+|..++.... ...+.. +..++.
T Consensus 107 ~~~~~~i~~ia~~~~~~~~---w~~ll~~L~~~l~~~~-----~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~ 176 (462)
T 1ibr_B 107 SSASQCVAGIACAEIPVNQ---WPELIPQLVANVTNPN-----STEHMKESTLEAIGYICQDID--PEQLQDKSNEILTA 176 (462)
T ss_dssp CSHHHHHHHHHHHHGGGTC---CTTHHHHHHHHHHCTT-----CCHHHHHHHHHHHHHHHHHSC--GGGTGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccc---cHHHHHHHHHHhccCC-----CCHHHHHHHHHHHHHHHHhCC--chhhHhHHHHHHHH
Confidence 3455556666664321111 2478899999886541 024578889988887742110 111111 346788
Q ss_pred HHHHHhcC--CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchH
Q 021417 187 MVWFLKSG--DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPI 264 (312)
Q Consensus 187 lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr 264 (312)
+...|++. +.+.|..|+.++..+...-......-...+-+++.|...+.+. ++..++.++.+|..++... ++--
T Consensus 177 l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~---~~~~ 252 (462)
T 1ibr_B 177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLY---YQYM 252 (462)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHC---GGGC
T ss_pred HHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHHH---HHHH
Confidence 88899887 7899999999998875332211100001112456666666655 7788889999999997542 1100
Q ss_pred HHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 265 QKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 265 ~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
...+..+.++.++..+.+.+..+...++
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~v~~~a~ 280 (462)
T 1ibr_B 253 ETYMGPALFAITIEAMKSDIDEVALQGI 280 (462)
T ss_dssp TTTTTTTHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 0111115666677766655555555555
No 89
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.29 E-value=0.036 Score=40.29 Aligned_cols=60 Identities=15% Similarity=0.056 Sum_probs=45.2
Q ss_pred cchhhhhhHHHhhhhccc-chhhHHh-hHHHHhhCCCcccccccccCCCCccccchhh--hhhhc
Q 021417 6 HVRLINLAKWLVESAWVA-LRLFQER-CEEELLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTK 66 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~er-~~~e~~~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc 66 (312)
..+.|++-...+.+|++. =+++|=+ +...|+..+.+||+-++++. ..+.||..|. ++.+.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~l~~~~~~~~ 77 (81)
T 2csy_A 14 IPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG-GIFNPAKELMAKLQKSG 77 (81)
T ss_dssp CCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC-SCCEECHHHHHHHSSSC
T ss_pred CCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc-ccCCcHHHHHHHHHhhC
Confidence 456788888889999976 5665544 45567777899999999996 6788997776 55443
No 90
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=90.16 E-value=0.045 Score=42.10 Aligned_cols=61 Identities=8% Similarity=0.010 Sum_probs=45.0
Q ss_pred chhhhhhHHHhhhhccc-chhhHHhh-HHHHhh---CCCcccccccccCCCCccccchhh--hhhhch
Q 021417 7 VRLINLAKWLVESAWVA-LRLFQERC-EEELLW---AAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-~~~~~er~-~~e~~~---G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc~ 67 (312)
.+.||+-...+.+|++. =+++|=+. ...|+. +..+||+-++++...++.||+.|. |+.+..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence 35677777788899866 56655544 444544 345999999999999999999998 666654
No 91
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=90.09 E-value=0.027 Score=44.14 Aligned_cols=59 Identities=7% Similarity=-0.153 Sum_probs=46.1
Q ss_pred chhhhhhHHHhhhhccc--chhhHHhhHHH-HhhCCCcccccccccCCCCccccchhh--hhhhch
Q 021417 7 VRLINLAKWLVESAWVA--LRLFQERCEEE-LLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 7 ~~~~~~~~~~~~~~~~~--~~~~~er~~~e-~~~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc~ 67 (312)
.+.||+-..++.+|+++ =+++|=+.=|. |+. .+||+-++++...++.||+.|+ |+.|..
T Consensus 22 ~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~ 85 (117)
T 1jm7_B 22 LLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQLCSK 85 (117)
T ss_dssp TTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHHHHHHHH
Confidence 45678888888999964 67777665444 443 8999999999888999999999 777765
No 92
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=89.20 E-value=0.043 Score=45.75 Aligned_cols=62 Identities=5% Similarity=-0.162 Sum_probs=48.0
Q ss_pred cchhhhhhHHHhhhhccc-chhhHHhhH--HHHhhCCCcccccccccCCCCccccchhh--hhhhch
Q 021417 6 HVRLINLAKWLVESAWVA-LRLFQERCE--EELLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~er~~--~e~~~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc~ 67 (312)
+.+.||+-..++.+|++. -+++|=+.= .|+..++.+||.-++++...++.||..++ |.++..
T Consensus 17 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v 83 (170)
T 3hcs_A 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMV 83 (170)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEE
T ss_pred CCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhccc
Confidence 357799999999999976 666666653 33445567999999999988899999887 776654
No 93
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=88.57 E-value=8.9 Score=38.57 Aligned_cols=151 Identities=9% Similarity=-0.054 Sum_probs=95.7
Q ss_pred ChHHHHHHHHHH-HhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHH
Q 021417 85 SSVEVLEINSKI-TAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILST 163 (312)
Q Consensus 85 ~~~~v~~ll~~l-~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~i 163 (312)
+..++..++... .+ .|...+.+|-..|..+.+.+ ..|+...|+..+.+.+. +..++.-|.-.
T Consensus 2 d~~~l~~~L~~~~~s----~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~l~~il~~~~~-----~~~vR~~A~~~ 64 (861)
T 2bpt_A 2 STAEFAQLLENSILS----PDQNIRLTSETQLKKLSNDN--------FLQFAGLSSQVLIDENT-----KLEGRILAALT 64 (861)
T ss_dssp CHHHHHHHHHHHHHC----SSHHHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHTCTTS-----CHHHHHHHHHH
T ss_pred CHHHHHHHHHHcccC----cCHHHHHHHHHHHHHHHhhC--------HHHHHHHHHHHHhCCCC-----ChHHHHHHHHH
Confidence 345666777776 54 46566667888887765431 12567778888854321 24567777777
Q ss_pred HHhcCCCCh-hHH-------H-hccC---CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHH
Q 021417 164 LTLLFPLAG-EAL-------T-YLGS---ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLY 231 (312)
Q Consensus 164 L~~L~~~~~-e~k-------~-~l~~---~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV 231 (312)
|.++..... ..+ . .+.. ...-..++..|.+.+...|..++.+|..+....-. -+.-+.+++.|+
T Consensus 65 lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p----~~~w~~ll~~L~ 140 (861)
T 2bpt_A 65 LKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELP----HGAWPELMKIMV 140 (861)
T ss_dssp HHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG----GTCCHHHHHHHH
T ss_pred HHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCc----ccccHHHHHHHH
Confidence 776532210 000 0 1211 12345677788888888899999999888633100 013357899999
Q ss_pred HhhcCCCChHHHHHHHHHHHHhhcC
Q 021417 232 TLIKEPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 232 ~ll~~~~~~~a~~~Al~aL~~L~~~ 256 (312)
..+.++.++..+..|+.+|..++..
T Consensus 141 ~~l~~~~~~~~r~~al~~l~~l~~~ 165 (861)
T 2bpt_A 141 DNTGAEQPENVKRASLLALGYMCES 165 (861)
T ss_dssp HHTSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHc
Confidence 9997654678899999999999863
No 94
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=88.50 E-value=2.1 Score=39.63 Aligned_cols=142 Identities=7% Similarity=-0.020 Sum_probs=87.9
Q ss_pred CchhhhHHHHHHHHHHHhchhhhHHHHh--cCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHh-ccC
Q 021417 104 DQTGGRDLVAKIKKWIKESERNKRCIVD--YGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTY-LGS 180 (312)
Q Consensus 104 d~~~~~~al~~l~~lak~s~~nR~~l~~--aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~-l~~ 180 (312)
|+..+..++.-+..++++.... .+.. ..+++.+...|.... .+..++..|+.+|..+...-.++-.. ...
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~~--~~~~~~~~ll~~l~~~l~~~~-----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~ 215 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDPE--QLQDKSNEILTAIIQGMRKEE-----PSNNVKLAATNALLNSLEFTKANFDKESER 215 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCGG--GTGGGHHHHHHHHHHHHSTTC-----CCHHHHHHHHHHHHHHTTTTHHHHTSHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCch--hhHhHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 5556667888888888764211 1111 135666666664331 13578899999887764322211100 000
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHH-HHHhhhhh-chHHHHHHhhcCCCChHHHHHHHHHHHHhhcC
Q 021417 181 ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRR-VNMFLEIE-GAIESLYTLIKEPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 181 ~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~-~~~Ig~~~-g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~ 256 (312)
.-.++.+...+.+.+.+.|..++.+|..+....+.. ...+ + ++++.++..+++. ++..+..|+..+..++..
T Consensus 216 ~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 216 HFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM---GPALFAITIEAMKSD-IDEVALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT---TTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHH
Confidence 113556666677778999999999999997543321 1222 2 6777777778776 778888999999988754
No 95
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=88.46 E-value=1 Score=48.30 Aligned_cols=153 Identities=10% Similarity=0.008 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHh
Q 021417 87 VEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTL 166 (312)
Q Consensus 87 ~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~ 166 (312)
.++..++.++.+ .|...+..|...|....+.....=.--....+++.|+..|.+. +.+++..|+.+|..
T Consensus 6 ~~l~~lL~~l~s----~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~-------~~~vR~~A~~~L~~ 74 (1230)
T 1u6g_C 6 YHISNLLEKMTS----SDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-------NGEVQNLAVKCLGP 74 (1230)
T ss_dssp HHHHHHHHHTTC----SSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS-------SHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCC----CCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHH
Confidence 467778888754 4666666787888776653211000000113456677777532 46788888888877
Q ss_pred cCCCC-hhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHH----HHhhhhhchHHHHHHhhcCCCChH
Q 021417 167 LFPLA-GEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRV----NMFLEIEGAIESLYTLIKEPICPT 241 (312)
Q Consensus 167 L~~~~-~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~----~~Ig~~~g~i~~LV~ll~~~~~~~ 241 (312)
++... +... +..++.+...|.+.+...|..|+..|..++....... ..-...+.+++.|+..+.+..++.
T Consensus 75 l~~~~~~~~~-----~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~ 149 (1230)
T 1u6g_C 75 LVSKVKEYQV-----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVS 149 (1230)
T ss_dssp HHTTSCHHHH-----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHH
T ss_pred HHHhCCHHHH-----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchH
Confidence 65322 2111 2356677777778888889999999988864322110 000012468899999997533788
Q ss_pred HHHHHHHHHHHhhc
Q 021417 242 ATEASFVVVYHMIT 255 (312)
Q Consensus 242 a~~~Al~aL~~L~~ 255 (312)
.+..|+.+|..++.
T Consensus 150 ~~~~al~~l~~~~~ 163 (1230)
T 1u6g_C 150 VQLEALDIMADMLS 163 (1230)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999999984
No 96
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=87.48 E-value=12 Score=37.67 Aligned_cols=172 Identities=12% Similarity=0.062 Sum_probs=95.5
Q ss_pred CchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCCh----hH-----
Q 021417 104 DQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAG----EA----- 174 (312)
Q Consensus 104 d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~----e~----- 174 (312)
|...+..++.-+..++......-.-.....+++.+...+... +..++..|+..+..++.... +.
T Consensus 230 ~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~ 302 (876)
T 1qgr_A 230 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-------IDEVALQGIEFWSNVCDEEMDLAIEASEAAE 302 (876)
T ss_dssp SHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS-------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCC-------chHHHHHHHHHHHHHHHHHHhHhhhhccccc
Confidence 434444566666666665432111111124566666655322 24567777776665532100 00
Q ss_pred ------HH---hcc--CCCCHHHHHHHHhc-------CCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcC
Q 021417 175 ------LT---YLG--SASSMHCMVWFLKS-------GDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKE 236 (312)
Q Consensus 175 ------k~---~l~--~~~~l~~lv~~L~~-------gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~ 236 (312)
+. .+. -...++.++..|.. .+...|..|+.+|..++....+ ..+ +.+++.+...+.+
T Consensus 303 ~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~---~~~l~~l~~~l~~ 377 (876)
T 1qgr_A 303 QGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV---PHVLPFIKEHIKN 377 (876)
T ss_dssp HSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH---HHHHHHHHHHTTC
T ss_pred cCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH---HHHHHHHHHHccC
Confidence 00 000 01245566666653 3567899999999988643221 122 3567777777877
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCCc-chHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 237 PICPTATEASFVVVYHMITSASAAD-KPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 237 ~~~~~a~~~Al~aL~~L~~~~~~~~-~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
. +++.+..|+.+|.+++... + ......+ ...++.|+..|.|....+...++
T Consensus 378 ~-~~~~r~~a~~~l~~i~~~~---~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~ 429 (876)
T 1qgr_A 378 P-DWRYRDAAVMAFGCILEGP---EPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAA 429 (876)
T ss_dssp S-SHHHHHHHHHHHHHTSSSS---CHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHH
T ss_pred C-ChHHHHHHHHHHHHHHcCC---CHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHH
Confidence 6 7899999999999998653 1 1122222 34788888888765544444444
No 97
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=87.00 E-value=9.7 Score=38.39 Aligned_cols=169 Identities=8% Similarity=0.013 Sum_probs=99.6
Q ss_pred hHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCC-ChhHHHhcc--CCCCHH
Q 021417 109 RDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPL-AGEALTYLG--SASSMH 185 (312)
Q Consensus 109 ~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~-~~e~k~~l~--~~~~l~ 185 (312)
..+..-|..+++...... ....+++.|...+.+... +..+++.++.+|..+... ..+ .+. -+..++
T Consensus 107 ~~~~~~l~~i~~~~~~~~---~w~~ll~~l~~~l~~~~~-----~~~~r~~al~~l~~l~~~~~~~---~~~~~~~~ll~ 175 (876)
T 1qgr_A 107 SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNS-----TEHMKESTLEAIGYICQDIDPE---QLQDKSNEILT 175 (876)
T ss_dssp CHHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTC-----CHHHHHHHHHHHHHHHHHSCHH---HHGGGHHHHHH
T ss_pred HHHHHHHHHHHHhhCccc---ccHHHHHHHHHHHhCCCC-----CHHHHHHHHHHHHHHHHhcCHh---hHHhHHHHHHH
Confidence 456666666666432111 123678888888865410 245788888888776421 111 121 134677
Q ss_pred HHHHHHhcC--CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcch
Q 021417 186 CMVWFLKSG--DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKP 263 (312)
Q Consensus 186 ~lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~N 263 (312)
.+...|.++ +.+.|..|+..|..+...-+.....-...+.+++.+...+.+. ++..+..|+.+|..++... ++-
T Consensus 176 ~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~-~~~vr~~a~~~l~~l~~~~---~~~ 251 (876)
T 1qgr_A 176 AIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-DTRVRVAALQNLVKIMSLY---YQY 251 (876)
T ss_dssp HHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHS---GGG
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHh---HHH
Confidence 788888877 6889999999999886432211100001113677777777655 7788888999999997543 122
Q ss_pred HHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 264 IQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 264 r~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
-...+....++.+++.+.+.+..+...++
T Consensus 252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al 280 (876)
T 1qgr_A 252 METYMGPALFAITIEAMKSDIDEVALQGI 280 (876)
T ss_dssp CHHHHTTTHHHHHHHHHTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 22333346677777766554444555555
No 98
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=86.86 E-value=21 Score=35.47 Aligned_cols=94 Identities=11% Similarity=0.074 Sum_probs=70.7
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhh--cCCCChHHHHHHHHHHHHhhcCCCCC
Q 021417 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLI--KEPICPTATEASFVVVYHMITSASAA 260 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll--~~~~~~~a~~~Al~aL~~L~~~~~~~ 260 (312)
.+..+.+=|++.+.-.|..|.+.|..+. . ++ .+ + .+++.+.+.+ .+. +|-.++.|+.+++++....
T Consensus 112 ~iN~l~kDl~~~n~~ir~lALr~L~~i~-~-~e---~~-~--~l~~~v~~~l~~~d~-~~~VRK~A~~al~kl~~~~--- 179 (621)
T 2vgl_A 112 INNAIKNDLASRNPTFMGLALHCIANVG-S-RE---MA-E--AFAGEIPKILVAGDT-MDSVKQSAALCLLRLYRTS--- 179 (621)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHC-C-HH---HH-H--HHTTHHHHHHHCSSS-CHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHhhccC-C-HH---HH-H--HHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHhC---
Confidence 4667777788889999999999999984 2 33 22 2 4677888888 666 8999999999999998643
Q ss_pred cchHHHHHH-cCcHHHHHHHhhhcccchhhhhh
Q 021417 261 DKPIQKFVD-MGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 261 ~~Nr~~~V~-~G~V~~LvelL~~~~~~~~e~aL 292 (312)
+ .+++ .+.++.|.++|.|.+.++..-|+
T Consensus 180 -p---~~~~~~~~~~~l~~lL~d~d~~V~~~a~ 208 (621)
T 2vgl_A 180 -P---DLVPMGDWTSRVVHLLNDQHLGVVTAAT 208 (621)
T ss_dssp -G---GGCCCCSCHHHHHHHTTCSCHHHHHHHH
T ss_pred -h---hhcCchhHHHHHHHHhCCCCccHHHHHH
Confidence 1 2233 47899999999876766766666
No 99
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=86.37 E-value=0.084 Score=40.12 Aligned_cols=58 Identities=12% Similarity=-0.104 Sum_probs=42.3
Q ss_pred chhhhhhHHHhhhhcc-c-chh-hHHhhHHHHhhCC-CcccccccccCCCCccccchhh-hhh
Q 021417 7 VRLINLAKWLVESAWV-A-LRL-FQERCEEELLWAA-EMIKIKAQDLKGKEVKVNTSLL-YQQ 64 (312)
Q Consensus 7 ~~~~~~~~~~~~~~~~-~-~~~-~~er~~~e~~~G~-~TCP~T~Q~L~~~~l~PN~tLr-Iq~ 64 (312)
.+.|++-..++.+|++ + =++ |=..+...|+..+ .+||.-++++...++++|..+. |.+
T Consensus 22 ~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~ 84 (100)
T 3lrq_A 22 VFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQ 84 (100)
T ss_dssp HTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHH
T ss_pred CCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHH
Confidence 3557777777889997 5 445 4455555555544 7999999999888999999998 443
No 100
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=85.17 E-value=8 Score=38.92 Aligned_cols=172 Identities=9% Similarity=0.007 Sum_probs=96.3
Q ss_pred hhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCC-ChhHHHhcc--CCC
Q 021417 106 TGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPL-AGEALTYLG--SAS 182 (312)
Q Consensus 106 ~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~-~~e~k~~l~--~~~ 182 (312)
..+..+...|..+++..-.... ...+++.|+..+.+.. +..+++.++.+|..++.. ..+.+ .+. ...
T Consensus 110 ~vr~~~~~~l~~i~~~~~p~~~---w~~ll~~L~~~l~~~~------~~~~r~~al~~l~~l~~~~~~~~~-~~~~~~~~ 179 (861)
T 2bpt_A 110 RIANAAAQLIAAIADIELPHGA---WPELMKIMVDNTGAEQ------PENVKRASLLALGYMCESADPQSQ-ALVSSSNN 179 (861)
T ss_dssp HHHHHHHHHHHHHHHHHGGGTC---CHHHHHHHHHHTSTTS------CHHHHHHHHHHHHHHHHTSSTTSS-TTGGGHHH
T ss_pred HHHHHHHHHHHHHHHhhCcccc---cHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHHcCChhhh-HHHHHHHH
Confidence 3334455556666654311101 1246677777775431 245788888888766421 11111 111 123
Q ss_pred CHHHHHHHHhcC--CHHHHHHHHHHHHHHhccchHHHH-HhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCC
Q 021417 183 SMHCMVWFLKSG--DLSRRRNTVLVLREVISSDHRRVN-MFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASA 259 (312)
Q Consensus 183 ~l~~lv~~L~~g--s~~~r~~Aa~lL~~Ls~~~~~~~~-~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~ 259 (312)
.++.+...|.+. +.+.|..|+.+|..+...-..... .. ..+.+++.|...+.++ ++..++.|+.+|..++...
T Consensus 180 ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~~ll~~l~~~~~~~-~~~~r~~a~~~l~~l~~~~-- 255 (861)
T 2bpt_A 180 ILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREG-ERNYLMQVVCEATQAE-DIEVQAAAFGCLCKIMSKY-- 255 (861)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHH-HHHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChh-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHH--
Confidence 566677777776 789999999999887532221110 01 1124667777777665 7888999999999987532
Q ss_pred CcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 260 ADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 260 ~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
+..-...+....++.++..+.+.+..+...++
T Consensus 256 -~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~ 287 (861)
T 2bpt_A 256 -YTFMKPYMEQALYALTIATMKSPNDKVASMTV 287 (861)
T ss_dssp -GGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 11111222224566666666655555555555
No 101
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=85.10 E-value=0.18 Score=35.13 Aligned_cols=52 Identities=10% Similarity=-0.053 Sum_probs=37.7
Q ss_pred chhhhhhHHHhhhh-------ccc-chh-hHHhhHHHHhhCCCcccccccccCCCCccccc
Q 021417 7 VRLINLAKWLVESA-------WVA-LRL-FQERCEEELLWAAEMIKIKAQDLKGKEVKVNT 58 (312)
Q Consensus 7 ~~~~~~~~~~~~~~-------~~~-~~~-~~er~~~e~~~G~~TCP~T~Q~L~~~~l~PN~ 58 (312)
.+.|+.-...+.+| ++. =++ |=..+...|...+.+||.-++++...++.|++
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 34566666666776 544 444 44556666777789999999999999999986
No 102
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.29 E-value=0.23 Score=35.04 Aligned_cols=53 Identities=8% Similarity=-0.076 Sum_probs=40.9
Q ss_pred cchhhhhhHHHhhhhcc--cchhhH-HhhHHHHhhCCCcccccccccCCCCccccc
Q 021417 6 HVRLINLAKWLVESAWV--ALRLFQ-ERCEEELLWAAEMIKIKAQDLKGKEVKVNT 58 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~--~~~~~~-er~~~e~~~G~~TCP~T~Q~L~~~~l~PN~ 58 (312)
+.+.|++-...+.+|++ +=+++| ..+..+|+..+.+||+-++++...++.+|.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 14 PYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp GGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred CCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 45678888888999985 455544 445556667789999999999988888885
No 103
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=82.98 E-value=31 Score=32.29 Aligned_cols=165 Identities=11% Similarity=0.073 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHhchh--hhHHHHhcCCHHHHHHHhhccccccc----chhHHHHHHHHHHHHhcCCCChhHHHhccCCCC
Q 021417 110 DLVAKIKKWIKESER--NKRCIVDYGAVSVLAAAFESFSKTCL----DEHVSVLEEILSTLTLLFPLAGEALTYLGSASS 183 (312)
Q Consensus 110 ~al~~l~~lak~s~~--nR~~l~~aG~v~~Lv~lL~s~~~~~~----~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~ 183 (312)
+.+..|+.--+..+. -+.+ . ++....|+.+|........ ......+...+..|..+.........++..+..
T Consensus 86 ~~L~sL~v~Lrt~~~sWV~~F-~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~ 163 (383)
T 3eg5_B 86 SCLESLRVSLTSHPVSWVQTF-G-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEG 163 (383)
T ss_dssp HHHHHHHHHHHHSCHHHHHHH-H-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSH
T ss_pred HHHHHHHHHHhhCccHHHHHH-H-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHH
Confidence 355666655554432 2333 3 4556888888853210000 012355677788887775422333556778899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccch-H--HHHH---------hhhhhchHHHHHHhhcCCCChHHHHHHHHHHH
Q 021417 184 MHCMVWFLKSGDLSRRRNTVLVLREVISSDH-R--RVNM---------FLEIEGAIESLYTLIKEPICPTATEASFVVVY 251 (312)
Q Consensus 184 l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~-~--~~~~---------Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~ 251 (312)
+..++..|.+.+...|..|.-+|..++...+ . +... .|+. .-+..+|..++++.+..... +...|.
T Consensus 164 i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~-~RF~~lv~~L~~~~~~e~~~-~~m~lI 241 (383)
T 3eg5_B 164 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEV-ERFQPLLDGLKSGTSIALKV-GCLQLI 241 (383)
T ss_dssp HHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTS-CTTHHHHHTTSTTSCHHHHH-HHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCC-CcHHHHHHHHHccCcHHHHH-HHHHHH
Confidence 9999999999999999999999988875432 1 2222 2232 44778898888653444444 545555
Q ss_pred Hh-hcCCCC---CcchHHHHHHcCcHHHHHH
Q 021417 252 HM-ITSASA---ADKPIQKFVDMGLVSLLLE 278 (312)
Q Consensus 252 ~L-~~~~~~---~~~Nr~~~V~~G~V~~Lve 278 (312)
|. +....+ +-.-|..+...|....+-+
T Consensus 242 N~li~~~~dl~~R~~lR~ef~~~Gl~~il~~ 272 (383)
T 3eg5_B 242 NALITPAEELDFRVHIRSELMRLGLHQVLQE 272 (383)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCChHHHHHH
Confidence 54 443211 0125777888998887766
No 104
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=82.48 E-value=0.18 Score=40.56 Aligned_cols=58 Identities=14% Similarity=-0.066 Sum_probs=38.2
Q ss_pred hhhhhhHHHhhhhccc-chhhHH-hhHHHHhhCCCcccccccccCCCCccccchhh--hhhhch
Q 021417 8 RLINLAKWLVESAWVA-LRLFQE-RCEEELLWAAEMIKIKAQDLKGKEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~~~~~e-r~~~e~~~G~~TCP~T~Q~L~~~~l~PN~tLr--Iq~Wc~ 67 (312)
+.||.-...+.||+++ =+++|= .+...|+..+.+||+-++++.+. .+|..+. |+.+..
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~~ 115 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK--TYSLVLDNCINKMVN 115 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE--EECHHHHHHHHHHHT
T ss_pred CCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC--CCccchhHHHHHHHH
Confidence 3477777778888866 555554 44556777888999999888643 3455554 555543
No 105
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=82.14 E-value=3 Score=44.64 Aligned_cols=180 Identities=18% Similarity=0.154 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhh-----HHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHH
Q 021417 88 EVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNK-----RCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILS 162 (312)
Q Consensus 88 ~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR-----~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~ 162 (312)
....++..+...-...++..+..|...|..++....... ..-....++|.|...+.... +..+++.|+.
T Consensus 83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~------~~~~~~~al~ 156 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE------DVSVQLEALD 156 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCC------chHHHHHHHH
Confidence 444444444332112333444556777777776544220 00011246788888775311 3568899999
Q ss_pred HHHhcCCCChhHHHhccC--CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCCh
Q 021417 163 TLTLLFPLAGEALTYLGS--ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICP 240 (312)
Q Consensus 163 iL~~L~~~~~e~k~~l~~--~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~ 240 (312)
+|..++. .....+.. +..++.+...|.+.+...|..|+..|-.++...+. ..+ +.+++.|+..+.+..++
T Consensus 157 ~l~~~~~---~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~---~~~l~~l~~~L~~~~~~ 228 (1230)
T 1u6g_C 157 IMADMLS---RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF---VDLIEHLLSELSKNDSM 228 (1230)
T ss_dssp HHHHHHH---HTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C---TTHHHHHHHHHHHTCSS
T ss_pred HHHHHHH---HhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH---HHHHHHHHHHhccCCch
Confidence 8887642 10011111 23566777777778889999999999999754332 112 35788888887654233
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchHHHHHH--cCcHHHHHHHhhhcccch
Q 021417 241 TATEASFVVVYHMITSASAADKPIQKFVD--MGLVSLLLETLVDAQRSL 287 (312)
Q Consensus 241 ~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~--~G~V~~LvelL~~~~~~~ 287 (312)
..+..|+.++-.++... +. .+.. ...++.+++.+.+.+..+
T Consensus 229 ~~r~~a~~~l~~l~~~~---~~---~~~~~l~~l~~~ll~~l~d~~~~v 271 (1230)
T 1u6g_C 229 STTRTYIQCIAAISRQA---GH---RIGEYLEKIIPLVVKFCNVDDDEL 271 (1230)
T ss_dssp CSCTTHHHHHHHHHHHS---SG---GGTTSCTTHHHHHHHHHSSCCTTT
T ss_pred hHHHHHHHHHHHHHHHh---HH---HHHHHHHHHHHHHHHHhcCCCHHH
Confidence 44555777777776532 11 1111 246777777776544333
No 106
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=81.21 E-value=0.26 Score=33.45 Aligned_cols=50 Identities=8% Similarity=-0.089 Sum_probs=34.3
Q ss_pred hhhhhHHHhhhh-------ccc-chhhH-HhhHHHHhhCCCcccccccccCCCCccccc
Q 021417 9 LINLAKWLVESA-------WVA-LRLFQ-ERCEEELLWAAEMIKIKAQDLKGKEVKVNT 58 (312)
Q Consensus 9 ~~~~~~~~~~~~-------~~~-~~~~~-er~~~e~~~G~~TCP~T~Q~L~~~~l~PN~ 58 (312)
.|+.-...+.+| ++. =++.| ..+...|...+.+||.-++++...++.|++
T Consensus 5 ~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 63 (64)
T 2xeu_A 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63 (64)
T ss_dssp BCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred CCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence 455545555565 433 44544 445556766789999999999988998876
No 107
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=79.91 E-value=0.11 Score=40.31 Aligned_cols=62 Identities=8% Similarity=-0.114 Sum_probs=46.6
Q ss_pred cchhhhhhHHHhhhhccc-chhhHHhh-HHHH-hhCCCcccccccccCC-------CCccccchhh--hhhhch
Q 021417 6 HVRLINLAKWLVESAWVA-LRLFQERC-EEEL-LWAAEMIKIKAQDLKG-------KEVKVNTSLL--YQQTKF 67 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~er~-~~e~-~~G~~TCP~T~Q~L~~-------~~l~PN~tLr--Iq~Wc~ 67 (312)
+.+.|++-..++.+|+++ =+++|=+. ...| ..++.+||.-++++.. .++.+|..|. |+.|.-
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP 87 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence 346688888888899966 56666554 3334 4468899999999864 5788999999 999985
No 108
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=79.62 E-value=15 Score=34.24 Aligned_cols=93 Identities=12% Similarity=0.113 Sum_probs=64.6
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcc
Q 021417 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADK 262 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~ 262 (312)
+..++.+=+++.+.-.|.+|.+.|..+. . ++. + +.+.+.+-+.|.+. +|-.++.|+.+.++|+...
T Consensus 105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~-~-~~m---~---~~l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~----- 170 (355)
T 3tjz_B 105 VTSSLTKDMTGKEDSYRGPAVRALCQIT-D-STM---L---QAIERYMKQAIVDK-VPSVSSSALVSSLHLLKCS----- 170 (355)
T ss_dssp GHHHHHHHHHSSCHHHHHHHHHHHHHHC-C-TTT---H---HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTC-----
T ss_pred HHHHHHhhcCCCcHhHHHHHHHHHhcCC-C-HHH---H---HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccC-----
Confidence 5777788888888888888888888884 2 322 2 13556666777776 7888888888888887653
Q ss_pred hHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 263 PIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 263 Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
..+|+ +.+..+-+++.|.+..+.-.|+
T Consensus 171 --pe~v~-~~~~~l~~ll~d~n~~V~~~Al 197 (355)
T 3tjz_B 171 --FDVVK-RWVNEAQEAASSDNIMVQYHAL 197 (355)
T ss_dssp --HHHHH-TTHHHHHHHTTCSSHHHHHHHH
T ss_pred --HHHHH-HHHHHHHHHhcCCCccHHHHHH
Confidence 33454 5778888888765545554444
No 109
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=78.54 E-value=38 Score=30.62 Aligned_cols=153 Identities=9% Similarity=-0.030 Sum_probs=85.8
Q ss_pred hhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHH-HhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccC--CCC
Q 021417 107 GGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAA-AFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGS--ASS 183 (312)
Q Consensus 107 ~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~-lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~--~~~ 183 (312)
...-++.=+|.++. .+..-..+.+.+.-..++. ++....+. ..+..+=-++++|.|++. +...+..+.+ ...
T Consensus 118 ~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~---~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~i 192 (304)
T 3ebb_A 118 IVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPK---GKPANQLLALRTFCNCFV-GQAGQKLMMSQRESL 192 (304)
T ss_dssp TCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTT---SCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHH
T ss_pred hHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCC---CChHHHHHHHHHHHHccC-CchhHHHHHHHHHHH
Confidence 33445544444444 3333344555433333332 33221111 123346668889999854 5556665442 235
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcch
Q 021417 184 MHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKP 263 (312)
Q Consensus 184 l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~N 263 (312)
++.+...+.+.+...|..++.++++++...-... ..-....++..+..+++...++++.--++.+|-+|.... ..
T Consensus 193 l~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~-~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~----~~ 267 (304)
T 3ebb_A 193 MSHAIELKSGSNKNIHIALATLALNYSVCFHKDH-NIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDD----SN 267 (304)
T ss_dssp HHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTC----HH
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCC----hh
Confidence 6666666555678899999999999974311100 011112355566667765568888888999999998764 44
Q ss_pred HHHHHH
Q 021417 264 IQKFVD 269 (312)
Q Consensus 264 r~~~V~ 269 (312)
...+.+
T Consensus 268 ~~~lak 273 (304)
T 3ebb_A 268 AVQLAK 273 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 110
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=78.37 E-value=0.24 Score=38.36 Aligned_cols=60 Identities=7% Similarity=-0.072 Sum_probs=41.8
Q ss_pred chhhhhhHHHhhhhccc-chhhHHhh-HHHHh-hCCCcccccccccCCCCccc-cchhh--hhhhc
Q 021417 7 VRLINLAKWLVESAWVA-LRLFQERC-EEELL-WAAEMIKIKAQDLKGKEVKV-NTSLL--YQQTK 66 (312)
Q Consensus 7 ~~~~~~~~~~~~~~~~~-~~~~~er~-~~e~~-~G~~TCP~T~Q~L~~~~l~P-N~tLr--Iq~Wc 66 (312)
.+.||+-..++.+|++. =+++|=+. ...|+ .++.+||..++++...++.| |..+. |.++.
T Consensus 23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~ 88 (116)
T 1rmd_A 23 SISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLM 88 (116)
T ss_dssp HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCE
T ss_pred CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhc
Confidence 46688888889999966 66666555 33343 45789999999998877654 45555 55443
No 111
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=77.56 E-value=34 Score=29.45 Aligned_cols=147 Identities=12% Similarity=0.087 Sum_probs=89.3
Q ss_pred cCCHHHHHHHhhccccccc----chhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHH
Q 021417 132 YGAVSVLAAAFESFSKTCL----DEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLR 207 (312)
Q Consensus 132 aG~v~~Lv~lL~s~~~~~~----~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~ 207 (312)
.|++..|+.+|........ +.....+.+.+..|..+.........++..++.+..++..|.+.+...|..|.-+|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 4567778888754211000 012455677788887775422334556777889999999999999999999999998
Q ss_pred HHhccch--H-HHHH---------hhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHh-hcCCCC---CcchHHHHHHcC
Q 021417 208 EVISSDH--R-RVNM---------FLEIEGAIESLYTLIKEPICPTATEASFVVVYHM-ITSASA---ADKPIQKFVDMG 271 (312)
Q Consensus 208 ~Ls~~~~--~-~~~~---------Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L-~~~~~~---~~~Nr~~~V~~G 271 (312)
.++...+ . +... .++. .-+..+|+.++++.+.. .+.+...+.|. +.+..+ +-.-|..+..+|
T Consensus 122 ~lc~~~~~~G~~~~VL~Al~~~~~~~e~-~RF~~lv~~l~~~~~~e-~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G 199 (233)
T 2f31_A 122 ALCILPQPEDMNERVLEAMTERAEMDEV-ERFQPLLDGLKSGTSIA-LKVGCLQLINALITPAEELDFRVHIRSELMRLG 199 (233)
T ss_dssp HHHTCSSSSCHHHHHHHHHHHHHHHHTS-CTTHHHHHTTSTTSCHH-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHhCCCCCChHHHHHHHHHHHHHhCCc-chHHHHHHHHhcCChHH-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence 8875432 1 2211 2222 35667888887553433 44455555555 443311 012677888899
Q ss_pred cHHHHHHHh
Q 021417 272 LVSLLLETL 280 (312)
Q Consensus 272 ~V~~LvelL 280 (312)
.-+.+-++=
T Consensus 200 l~~il~~l~ 208 (233)
T 2f31_A 200 LHQVLQELR 208 (233)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHh
Confidence 887775543
No 112
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=77.19 E-value=25 Score=32.72 Aligned_cols=91 Identities=8% Similarity=0.003 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHH
Q 021417 153 HVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYT 232 (312)
Q Consensus 153 ~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ 232 (312)
+.-++-.|++.|..+... +-- ....+.+...|.+.++-.|..|+.....|....++ .+ ++++..+-+
T Consensus 117 N~~iR~lALRtL~~I~~~--~m~-----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe---~v---~~~~~~l~~ 183 (355)
T 3tjz_B 117 EDSYRGPAVRALCQITDS--TML-----QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFD---VV---KRWVNEAQE 183 (355)
T ss_dssp CHHHHHHHHHHHHHHCCT--TTH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHH---HH---HTTHHHHHH
T ss_pred cHhHHHHHHHHHhcCCCH--HHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHH---HH---HHHHHHHHH
Confidence 466888999999987432 110 12445566667778999999999999999766554 34 368999999
Q ss_pred hhcCCCChHHHHHHHHHHHHhhcCC
Q 021417 233 LIKEPICPTATEASFVVVYHMITSA 257 (312)
Q Consensus 233 ll~~~~~~~a~~~Al~aL~~L~~~~ 257 (312)
++.+. +|...-.|+.+|+.++..+
T Consensus 184 ll~d~-n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 184 AASSD-NIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp HTTCS-SHHHHHHHHHHHHHHHTTC
T ss_pred HhcCC-CccHHHHHHHHHHHHHhhc
Confidence 99887 7888889999999998763
No 113
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.96 E-value=0.41 Score=32.98 Aligned_cols=48 Identities=6% Similarity=-0.129 Sum_probs=35.1
Q ss_pred cchhhhhhHHHhhhhccc-chhhHHhh-HHHHh-hCCCcccccccccCCCC
Q 021417 6 HVRLINLAKWLVESAWVA-LRLFQERC-EEELL-WAAEMIKIKAQDLKGKE 53 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~er~-~~e~~-~G~~TCP~T~Q~L~~~~ 53 (312)
+.+.||+-...+++|+++ =+++|=+. ...|+ .++.+||.-++++...+
T Consensus 14 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 64 (66)
T 2ecy_A 14 DKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64 (66)
T ss_dssp CCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTT
T ss_pred cCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhh
Confidence 456788888889999966 55655554 44454 57889999999987654
No 114
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=76.52 E-value=0.34 Score=34.42 Aligned_cols=53 Identities=11% Similarity=-0.150 Sum_probs=37.7
Q ss_pred cchhhhhhHHHhhhhcccc--hhhHHhhHH-HHhh--CCCcccccccccCCC-Cccccc
Q 021417 6 HVRLINLAKWLVESAWVAL--RLFQERCEE-ELLW--AAEMIKIKAQDLKGK-EVKVNT 58 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~--~~~~er~~~-e~~~--G~~TCP~T~Q~L~~~-~l~PN~ 58 (312)
+.+.||+-..++.+|+++. +++|=+.=| .|+. +..+||+-+++.... .+.||.
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~ 72 (74)
T 2yur_A 14 DELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGPS 72 (74)
T ss_dssp GGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCTT
T ss_pred CCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccCC
Confidence 4577888889999999764 787766643 3443 447999999986543 466664
No 115
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=75.79 E-value=3.5 Score=41.23 Aligned_cols=92 Identities=9% Similarity=0.046 Sum_probs=70.4
Q ss_pred hHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHH--hcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHH
Q 021417 153 HVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFL--KSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESL 230 (312)
Q Consensus 153 ~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L--~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~L 230 (312)
+..++..||..|..+.. ++-- +..++.+...| .+.++..|..|+..+..+...+++ .+ ..+++++.|
T Consensus 124 n~~ir~lALr~L~~i~~--~e~~-----~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~~-~~~~~~~~l 192 (621)
T 2vgl_A 124 NPTFMGLALHCIANVGS--REMA-----EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---LV-PMGDWTSRV 192 (621)
T ss_dssp CHHHHHHHHHHHHHHCC--HHHH-----HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---GC-CCCSCHHHH
T ss_pred CHHHHHHHHHHhhccCC--HHHH-----HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---hc-CchhHHHHH
Confidence 45677888888888732 2211 23567788888 777999999999999999765553 33 224899999
Q ss_pred HHhhcCCCChHHHHHHHHHHHHhhcC
Q 021417 231 YTLIKEPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 231 V~ll~~~~~~~a~~~Al~aL~~L~~~ 256 (312)
.++|.|. ++....+|+.+|+.++..
T Consensus 193 ~~lL~d~-d~~V~~~a~~~l~~i~~~ 217 (621)
T 2vgl_A 193 VHLLNDQ-HLGVVTAATSLITTLAQK 217 (621)
T ss_dssp HHHTTCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCC-CccHHHHHHHHHHHHHHh
Confidence 9999876 889999999999999875
No 116
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=75.27 E-value=14 Score=30.47 Aligned_cols=72 Identities=7% Similarity=-0.009 Sum_probs=54.7
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhc
Q 021417 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISS-DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 255 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~-~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~ 255 (312)
+++.|.+=|++++......|..+|..+..- .......|++. .++..|++++....++...+..+..+..-..
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~-~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSR-DFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhH-HHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 566777778889999999999999998643 24455677664 8999999999754577777777777776653
No 117
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=74.22 E-value=16 Score=38.77 Aligned_cols=72 Identities=4% Similarity=0.047 Sum_probs=54.2
Q ss_pred CCHHHHHHHHhcC-CHHHHHHHHHHHHHHhccchHHHHHhh-hhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCC
Q 021417 182 SSMHCMVWFLKSG-DLSRRRNTVLVLREVISSDHRRVNMFL-EIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 257 (312)
Q Consensus 182 ~~l~~lv~~L~~g-s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig-~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~ 257 (312)
..+|.++..|.++ .+.+|..|..++..|+...+ ..+| .-+.+||.+-..+-|- -+...++|..++..+|..-
T Consensus 133 ~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~ 206 (986)
T 2iw3_A 133 ALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAK---DQVALRMPELIPVLSETMWDT-KKEVKAAATAAMTKATETV 206 (986)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSH---HHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhH---HHHHHhccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcC
Confidence 3689999999866 79999999999999975433 2332 2234566666666554 6789999999999999765
No 118
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=73.33 E-value=34 Score=29.74 Aligned_cols=171 Identities=13% Similarity=0.148 Sum_probs=92.6
Q ss_pred hhhhHHHHHHHHHHHhchhhh--H-HHHhc-CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCC-hh--HHHhc
Q 021417 106 TGGRDLVAKIKKWIKESERNK--R-CIVDY-GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLA-GE--ALTYL 178 (312)
Q Consensus 106 ~~~~~al~~l~~lak~s~~nR--~-~l~~a-G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~-~e--~k~~l 178 (312)
..+.+|+.++..+........ . .+... ...+.+...+.. +|..+++.++.+|..++..- .. .+...
T Consensus 24 K~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~D-------sN~~v~~~al~~l~~~~~~~~~~~~~~~~~ 96 (278)
T 4ffb_C 24 KARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITD-------SNVVAQEQAIVALNSLIDAFASSSLKNAHN 96 (278)
T ss_dssp HHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTC-------SSHHHHHHHHHHHHHHHTTCC---CCHHHH
T ss_pred HHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHhhhhhcccchh
Confidence 556778988888876543211 0 11112 245666666643 36788999988887664311 11 11111
Q ss_pred --cCCCCHHHHHH-HHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhc
Q 021417 179 --GSASSMHCMVW-FLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 255 (312)
Q Consensus 179 --~~~~~l~~lv~-~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~ 255 (312)
.-...++.++. .|.++....|..|..++..+.... +....+++.++..+... +|+.+..++..|..+..
T Consensus 97 ~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~-------~~~~~~~e~l~~~l~~K-npkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 97 ITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLD-------TSITQSVELVIPFFEKK-LPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTS-------SSSHHHHHHHGGGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhc-------CcHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHH
Confidence 11235666664 366677788888888887774221 11123456666667655 88888888888888753
Q ss_pred CCCCCcchHHHHHHcCcHHHHHHHhhhcccchhhhhh
Q 021417 256 SASAADKPIQKFVDMGLVSLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 256 ~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e~aL 292 (312)
......-+....+. .+++.+..+|.+.+..|-+.|.
T Consensus 169 ~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~ 204 (278)
T 4ffb_C 169 AFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTM 204 (278)
T ss_dssp HHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHH
T ss_pred HhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHH
Confidence 21000122222222 2445566666665555544444
No 119
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=67.61 E-value=24 Score=29.21 Aligned_cols=72 Identities=10% Similarity=0.117 Sum_probs=55.1
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccc-hHHHHHhhhhhchHHHHHHhhcC-----CCChHHHHHHHHHHHHhhc
Q 021417 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSD-HRRVNMFLEIEGAIESLYTLIKE-----PICPTATEASFVVVYHMIT 255 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~-~~~~~~Ig~~~g~i~~LV~ll~~-----~~~~~a~~~Al~aL~~L~~ 255 (312)
++..|.+-|++++......|..+|..+..-. ......|++. .++..|++++.. ..++..++.++..+..-..
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~-~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKF-RFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH-HHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH-HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 6777778888999999999999999987432 3455578665 999999999963 2356777778887777753
No 120
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=67.27 E-value=30 Score=27.92 Aligned_cols=73 Identities=5% Similarity=0.058 Sum_probs=55.6
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chHHHHHhhhhhchHHHHHHhhcCC-----CChHHHHHHHHHHHHhhc
Q 021417 182 SSMHCMVWFLKSGDLSRRRNTVLVLREVISS-DHRRVNMFLEIEGAIESLYTLIKEP-----ICPTATEASFVVVYHMIT 255 (312)
Q Consensus 182 ~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~-~~~~~~~Ig~~~g~i~~LV~ll~~~-----~~~~a~~~Al~aL~~L~~ 255 (312)
.++..|.+=|++++......|..+|..+..- .......|++. .++..|++++... .++...+..+..+..-..
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~-~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKF-RFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSH-HHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH-HHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3677888888999999999999999998743 34566778665 9999999999741 355667777777776653
No 121
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=66.95 E-value=31 Score=27.93 Aligned_cols=72 Identities=8% Similarity=0.102 Sum_probs=54.7
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhc-cchHHHHHhhhhhchHHHHHHhhcCC-----CChHHHHHHHHHHHHhhc
Q 021417 183 SMHCMVWFLKSGDLSRRRNTVLVLREVIS-SDHRRVNMFLEIEGAIESLYTLIKEP-----ICPTATEASFVVVYHMIT 255 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~-~~~~~~~~Ig~~~g~i~~LV~ll~~~-----~~~~a~~~Al~aL~~L~~ 255 (312)
+++.|.+=|++++......|..+|..+.. ........|++. .++..|++++.+. .++...+..+..+..-..
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~-~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKF-RFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSH-HHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhH-HHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 67778788889999999999999999873 234555678665 8999999999742 356677777777777653
No 122
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=66.31 E-value=22 Score=28.38 Aligned_cols=70 Identities=7% Similarity=0.037 Sum_probs=54.1
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhh
Q 021417 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISS-DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMI 254 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~-~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~ 254 (312)
+++.|.+-|++++......|..+|..+..- .......|++. .++..|+++++.. ++...+..+..+....
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~-~Fl~el~~l~~~~-~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSR-DFASEVSNVLNKG-HPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSH-HHHHHHHHHHHHS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhH-HHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 677888889999999999999999988633 23455577565 8999999999654 7777777777777664
No 123
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=66.00 E-value=1.6 Score=29.81 Aligned_cols=51 Identities=14% Similarity=0.001 Sum_probs=36.1
Q ss_pred hhhhhhHH-Hhhhhc-----ccchhhH-HhhHHHH-hhCCCcccccccccCCCCccccc
Q 021417 8 RLINLAKW-LVESAW-----VALRLFQ-ERCEEEL-LWAAEMIKIKAQDLKGKEVKVNT 58 (312)
Q Consensus 8 ~~~~~~~~-~~~~~~-----~~~~~~~-er~~~e~-~~G~~TCP~T~Q~L~~~~l~PN~ 58 (312)
+.||.-.. .+.+|. .+=+++| ..+...| ..++.+||.-++++...++.||.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQL 62 (65)
T ss_dssp TCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEEC
T ss_pred CcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceeec
Confidence 45777777 788883 3445544 4444334 56778999999999988888874
No 124
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=65.83 E-value=0.41 Score=38.81 Aligned_cols=56 Identities=5% Similarity=-0.062 Sum_probs=38.2
Q ss_pred cchhhhhhHHHhhhhccc-chhhHHh-hHHHH-hhCCCcccccccccC---------CCCccccchhh
Q 021417 6 HVRLINLAKWLVESAWVA-LRLFQER-CEEEL-LWAAEMIKIKAQDLK---------GKEVKVNTSLL 61 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~er-~~~e~-~~G~~TCP~T~Q~L~---------~~~l~PN~tLr 61 (312)
+.+.||+-..++.+|+.+ =+++|=+ +...| ..++.+||+-++++. ..++.||..++
T Consensus 30 ~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~ 97 (141)
T 3knv_A 30 AKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAAR 97 (141)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHH
T ss_pred cCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHH
Confidence 346789999999999966 5565544 44444 446679999988753 22455777666
No 125
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=65.22 E-value=1.4 Score=34.16 Aligned_cols=55 Identities=7% Similarity=-0.139 Sum_probs=39.8
Q ss_pred cchhhhhhHHHhhhh-------ccc-chhhH-HhhHHHHhhCCCcccccccccCCCCccccchh
Q 021417 6 HVRLINLAKWLVESA-------WVA-LRLFQ-ERCEEELLWAAEMIKIKAQDLKGKEVKVNTSL 60 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~-------~~~-~~~~~-er~~~e~~~G~~TCP~T~Q~L~~~~l~PN~tL 60 (312)
+.+.|+.-...+++| +++ =+++| ..+..+|+..+.+||+-++++...++.|++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccccccccccC
Confidence 345677777777888 655 45544 55566677888999999999998888776644
No 126
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=63.37 E-value=30 Score=30.82 Aligned_cols=110 Identities=12% Similarity=0.083 Sum_probs=69.8
Q ss_pred CHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCC-CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Q 021417 134 AVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSA-SSMHCMVWFLKSGDLSRRRNTVLVLREVISS 212 (312)
Q Consensus 134 ~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~-~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~ 212 (312)
++|.|+.=+... ...+++.+-.+|..+.. +..+ ..++.+..-+++-+...|+.....+.++...
T Consensus 133 ~lP~LveKlGd~-------k~~vR~~~r~il~~l~~--------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~ 197 (266)
T 2of3_A 133 FVPYLLLKTGEA-------KDNMRTSVRDIVNVLSD--------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITN 197 (266)
T ss_dssp HHHHHHHGGGCS-------SHHHHHHHHHHHHHHHH--------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-------hHHHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence 455555544221 23566666666554411 1122 2566677778888999999999999888522
Q ss_pred chHHHHHhhhhhchH---HHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHH
Q 021417 213 DHRRVNMFLEIEGAI---ESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFV 268 (312)
Q Consensus 213 ~~~~~~~Ig~~~g~i---~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V 268 (312)
..+.. ...+ +.+.+++.|. +...+.+|+.++..+...- |+...+.+
T Consensus 198 -----~G~~~-~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~~~---Gd~v~k~l 246 (266)
T 2of3_A 198 -----AGISP-LKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFKFE---GDQMWKAA 246 (266)
T ss_dssp -----HCSGG-GGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHHHH---TTHHHHHH
T ss_pred -----cCCCc-cccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHHHh---hHHHHHHH
Confidence 12212 2578 9999999987 7888999999888775543 34444444
No 127
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=63.22 E-value=21 Score=30.81 Aligned_cols=73 Identities=8% Similarity=0.080 Sum_probs=56.4
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHhcc-chHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhc
Q 021417 182 SSMHCMVWFLKSGDLSRRRNTVLVLREVISS-DHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 255 (312)
Q Consensus 182 ~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~-~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~ 255 (312)
.+++.|.+=|++++......|..+|..+..- .......|++. .++..|+++++...++...+..+..+.....
T Consensus 45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANK-QTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 3677888888899999999999999998632 23456677565 8999999999765567777778888877753
No 128
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.76 E-value=1.5 Score=30.49 Aligned_cols=49 Identities=0% Similarity=-0.200 Sum_probs=33.9
Q ss_pred cchhhhhhHHHhhhhccc-chhhHHhh-HHHHhh---CCCcccccccccCCCCc
Q 021417 6 HVRLINLAKWLVESAWVA-LRLFQERC-EEELLW---AAEMIKIKAQDLKGKEV 54 (312)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~er~-~~e~~~---G~~TCP~T~Q~L~~~~l 54 (312)
+.+.||.-...+.+|++. =+++|=+. ...|+. ++.+||+-++++...++
T Consensus 19 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 19 EEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred cCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 456788888888899866 55555444 444543 67899999998875443
No 129
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=59.61 E-value=1.1e+02 Score=28.37 Aligned_cols=165 Identities=11% Similarity=0.079 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhchh--hhHHHHhcCCHHHHHHHhhccccccc----chhHHHHHHHHHHHHhcCCCChhHHHhccCCCCH
Q 021417 111 LVAKIKKWIKESER--NKRCIVDYGAVSVLAAAFESFSKTCL----DEHVSVLEEILSTLTLLFPLAGEALTYLGSASSM 184 (312)
Q Consensus 111 al~~l~~lak~s~~--nR~~l~~aG~v~~Lv~lL~s~~~~~~----~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l 184 (312)
-+..|+..-+..+. -+.+ . .|++..|+.+|........ ......+.+.+..|..+.........++..+..+
T Consensus 25 ~L~~L~v~Lrt~~~~Wv~~F-~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i 102 (386)
T 2bnx_A 25 CLESLRVSLNNNPVSWVQTF-G-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGI 102 (386)
T ss_dssp HHHHHHHHHHHSCHHHHHHH-H-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHH
T ss_pred HHHHHhHHHhcCCcHHHHHH-H-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHH
Confidence 45555554444421 2333 2 3566777787753211000 0124556777788877754223334566778899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccch--H-HHHH---------hhhhhchHHHHHHhhcCCCChHHHHHHHHHHHH
Q 021417 185 HCMVWFLKSGDLSRRRNTVLVLREVISSDH--R-RVNM---------FLEIEGAIESLYTLIKEPICPTATEASFVVVYH 252 (312)
Q Consensus 185 ~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~--~-~~~~---------Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~ 252 (312)
..++..|.+.++..|..+.-+|..++...+ . +... .++. .-+..||+-++++.+.. .+.+...|.|
T Consensus 103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~-~RF~~lv~~l~~~~~~e-~~~a~m~lIN 180 (386)
T 2bnx_A 103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEV-ERFQPLLDGLKSGTSIA-LKVGCLQLIN 180 (386)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTS-CTTHHHHHHTSTTSCHH-HHHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCch-hhHHHHHHHHHcCChHH-HHHHHHHHHH
Confidence 999999988899999999988888875532 1 2211 1222 35566888887553444 4445555555
Q ss_pred h-hcCCCC---CcchHHHHHHcCcHHHHHHH
Q 021417 253 M-ITSASA---ADKPIQKFVDMGLVSLLLET 279 (312)
Q Consensus 253 L-~~~~~~---~~~Nr~~~V~~G~V~~Lvel 279 (312)
. +....+ +-.-|..+..+|.-..+-.+
T Consensus 181 ~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~L 211 (386)
T 2bnx_A 181 ALITPAEELDFRVHIRSELMRLGLHQVLQEL 211 (386)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHCChHHHHHHH
Confidence 5 443311 00268888999988876544
No 130
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=58.02 E-value=29 Score=29.66 Aligned_cols=71 Identities=8% Similarity=0.068 Sum_probs=53.6
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccc-hHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhh
Q 021417 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSD-HRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMI 254 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~-~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~ 254 (312)
++..|.+=|++++......|..+|..+..-. ......|++. .++..|++++.+..++...+.++..+..-.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~-~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTK-ENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 6677777788999999999999999986432 3455678665 899999999986546666666666666654
No 131
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=51.19 E-value=58 Score=30.38 Aligned_cols=97 Identities=13% Similarity=0.188 Sum_probs=64.4
Q ss_pred CCHHHHHHHHhc----C-------CHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHH
Q 021417 182 SSMHCMVWFLKS----G-------DLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVV 250 (312)
Q Consensus 182 ~~l~~lv~~L~~----g-------s~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL 250 (312)
+.+..|+.+|.. + +.......+..|..+..........+ +.+..+..|+..+... .+..++.|+..|
T Consensus 109 ~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl-~~~~~i~~l~~~L~s~-~~~~~~~aleLL 186 (383)
T 3eg5_B 109 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTML-ETEEGILLLVRAMDPA-VPNMMIDAAKLL 186 (383)
T ss_dssp HHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHH-TCSSHHHHHHHTCCTT-SHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHH-cChHHHHHHHHHhCCC-chHHHHHHHHHH
Confidence 456666666642 1 23444567788888875544455566 5568999999998655 889999999999
Q ss_pred HHhhcCCCCCcch-HHHHH----------HcCcHHHHHHHhhh
Q 021417 251 YHMITSASAADKP-IQKFV----------DMGLVSLLLETLVD 282 (312)
Q Consensus 251 ~~L~~~~~~~~~N-r~~~V----------~~G~V~~LvelL~~ 282 (312)
..+|.+.. +.| ...+. +.+....+++.|.+
T Consensus 187 ~~lc~~~~--~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~ 227 (383)
T 3eg5_B 187 SALCILPQ--PEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 227 (383)
T ss_dssp HHHHTCCS--STTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred HHHHhCcC--cCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence 99998862 123 22222 23467777777754
No 132
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=50.76 E-value=34 Score=29.44 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCC
Q 021417 196 LSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSA 257 (312)
Q Consensus 196 ~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~ 257 (312)
.......+..|..+..........+ +.++.+..|+..+... ++..++.++..|..+|.++
T Consensus 68 ~~~~~~~l~CLkalmn~~~G~~~vl-~~~~~i~~l~~~L~s~-~~~~r~~~leLL~~lc~~~ 127 (233)
T 2f31_A 68 SRNQHEIIRCLKAFMNNKFGIKTML-ETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILP 127 (233)
T ss_dssp HHHHHHHHHHHHHHTSSHHHHHHHH-TSSSHHHHHHTTCCTT-SHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHH-cCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHhCC
Confidence 3445567788888875544455556 5558899999888654 8899999999999999986
No 133
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=49.64 E-value=2.6e+02 Score=29.57 Aligned_cols=146 Identities=10% Similarity=0.109 Sum_probs=86.2
Q ss_pred HHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhc--CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC
Q 021417 92 INSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDY--GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP 169 (312)
Q Consensus 92 ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~a--G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~ 169 (312)
++..+... ..| +.+..|+.-|..+++.+. ..+... ..+|++...+-.. ..+|...|..+|..++.
T Consensus 138 ~~~~~~~~--~kw-~~k~~~l~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~d~-------k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 138 LTNAIVET--NKW-QEKIAILAAFSAMVDAAK---DQVALRMPELIPVLSETMWDT-------KKEVKAAATAAMTKATE 204 (986)
T ss_dssp HHHHHHHC--CCH-HHHHHHHHHHHHHHHHSH---HHHHHHHHHHHHHHHHHTTCS-------SHHHHHHHHHHHHHHGG
T ss_pred HHHHhccc--cch-HHHHHHHHHHHHHHHHhH---HHHHHhccchhcchHhhcccC-------cHHHHHHHHHHHHHHHh
Confidence 44445332 234 455679999999998763 344443 6788888877433 24555655555443331
Q ss_pred --CChh-------HHHhccCCCC---------------------HHHHH----HHHhcCCHHHHHHHHHHHHHHhccch-
Q 021417 170 --LAGE-------ALTYLGSASS---------------------MHCMV----WFLKSGDLSRRRNTVLVLREVISSDH- 214 (312)
Q Consensus 170 --~~~e-------~k~~l~~~~~---------------------l~~lv----~~L~~gs~~~r~~Aa~lL~~Ls~~~~- 214 (312)
.+.+ .-+.|.+|+. |..++ +-|+..+...+..++.++.+++..-+
T Consensus 205 ~~~n~d~~~~~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~ 284 (986)
T 2iw3_A 205 TVDNKDIERFIPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVED 284 (986)
T ss_dssp GCCCTTTGGGHHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred cCCCcchhhhHHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCC
Confidence 1211 1112333432 22333 33444578889999999999986533
Q ss_pred --HHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHh
Q 021417 215 --RRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHM 253 (312)
Q Consensus 215 --~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L 253 (312)
+....+ +-++|+|-+....-.+|.+++.|.+++-.|
T Consensus 285 ~~~~~~f~---~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 285 PQVIAPFL---GKLLPGLKSNFATIADPEAREVTLRALKTL 322 (986)
T ss_dssp HHHHHHHH---TTTHHHHHHHTTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHhhhh---hhhhhHHHHHhhccCCHHHHHHHHHHHHHH
Confidence 233344 456777777765545788888777777776
No 134
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=49.57 E-value=8.5 Score=26.86 Aligned_cols=51 Identities=12% Similarity=0.044 Sum_probs=32.7
Q ss_pred hhhhhhHHHhhhhc----ccchhhH-HhhHHHHhhCCCcccccccccCCCCccccc
Q 021417 8 RLINLAKWLVESAW----VALRLFQ-ERCEEELLWAAEMIKIKAQDLKGKEVKVNT 58 (312)
Q Consensus 8 ~~~~~~~~~~~~~~----~~~~~~~-er~~~e~~~G~~TCP~T~Q~L~~~~l~PN~ 58 (312)
+.|+.-...+.++. ++=++.| ..+...|+..+.+||+-++++...++.||-
T Consensus 16 ~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 16 LECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 71 (78)
T ss_dssp CCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCC
T ss_pred CCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCcccCCCC
Confidence 44555444444432 2334434 445566777789999999999988877763
No 135
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.74 E-value=2.7 Score=30.19 Aligned_cols=55 Identities=13% Similarity=0.012 Sum_probs=36.5
Q ss_pred chhhhhhHHHhhh----hccc-chhhH-HhhHHHHhhC---CCcccccccccCCC---Cccccchhh
Q 021417 7 VRLINLAKWLVES----AWVA-LRLFQ-ERCEEELLWA---AEMIKIKAQDLKGK---EVKVNTSLL 61 (312)
Q Consensus 7 ~~~~~~~~~~~~~----~~~~-~~~~~-er~~~e~~~G---~~TCP~T~Q~L~~~---~l~PN~tLr 61 (312)
.+.||.-...+.+ |++. =+++| ..+...|+.. ..+||.-++++... .|.+|+.+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n~~~~ 81 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDNLTVL 81 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEECTTTT
T ss_pred CCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHHHHHH
Confidence 4567777777777 8765 45544 4444445443 58999999988743 577787765
No 136
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=47.09 E-value=1.5e+02 Score=31.36 Aligned_cols=55 Identities=7% Similarity=0.001 Sum_probs=33.6
Q ss_pred chHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhhcccchhh
Q 021417 225 GAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVDAQRSLCE 289 (312)
Q Consensus 225 g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~~~~~~~e 289 (312)
..++.++.++.+..++..+..|..+|-.+|... .+ .+ ++..|..++.|.+..|..
T Consensus 611 e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn----~~-~~-----aid~L~~L~~D~d~~Vrq 665 (963)
T 4ady_A 611 TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGK----GL-QS-----AIDVLDPLTKDPVDFVRQ 665 (963)
T ss_dssp SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS----CC-HH-----HHHHHHHHHTCSSHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCC----Cc-HH-----HHHHHHHHccCCCHHHHH
Confidence 456777776655447888888888887777653 12 33 344555666555444433
No 137
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=47.05 E-value=86 Score=27.03 Aligned_cols=134 Identities=7% Similarity=0.043 Sum_probs=75.1
Q ss_pred hhhHHHHHHHHHHHhchh---hhHHH--HhcCCHHHHHHH-hhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccC
Q 021417 107 GGRDLVAKIKKWIKESER---NKRCI--VDYGAVSVLAAA-FESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGS 180 (312)
Q Consensus 107 ~~~~al~~l~~lak~s~~---nR~~l--~~aG~v~~Lv~l-L~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~ 180 (312)
.+..++.-+..++..... .+... .-..++|.|+.= |.+. ...+.+.|+.+|..+..... ..
T Consensus 71 v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~-------k~~~~~~a~~~l~~~~~~~~------~~ 137 (278)
T 4ffb_C 71 AQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSS-------RATTKTQSMSCILSLCGLDT------SI 137 (278)
T ss_dssp HHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCC-------CHHHHHHHHHHHHHHHHTSS------SS
T ss_pred HHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCc-------cHHHHHHHHHHHHHHHHhcC------cH
Confidence 334566666666653221 11111 112345555542 3322 24567777776655421110 00
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccch----HHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcC
Q 021417 181 ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDH----RRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITS 256 (312)
Q Consensus 181 ~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~----~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~ 256 (312)
...++.+...+++.++..|..++..|..+...-. ..+..+ +.+++.+..++.+. ++..+..|..++..+..+
T Consensus 138 ~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l---~~i~~~l~k~l~d~-~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 138 TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFL---PELLKHVPQLAGHG-DRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH---HHHGGGHHHHHTCS-SHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH---HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHH
Confidence 1245666667888899999999999988752201 111122 23566777888777 888888899888888655
Q ss_pred C
Q 021417 257 A 257 (312)
Q Consensus 257 ~ 257 (312)
-
T Consensus 214 ~ 214 (278)
T 4ffb_C 214 T 214 (278)
T ss_dssp -
T ss_pred h
Confidence 3
No 138
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=44.75 E-value=1e+02 Score=24.80 Aligned_cols=71 Identities=11% Similarity=0.071 Sum_probs=48.8
Q ss_pred CHHHHHHHHh-cCCHHHHHHHHHHHHHHhccc-hHHHHHhhhhhchHHH-HHHhhcCC--CChHHHHHHHHHHHHhh
Q 021417 183 SMHCMVWFLK-SGDLSRRRNTVLVLREVISSD-HRRVNMFLEIEGAIES-LYTLIKEP--ICPTATEASFVVVYHMI 254 (312)
Q Consensus 183 ~l~~lv~~L~-~gs~~~r~~Aa~lL~~Ls~~~-~~~~~~Ig~~~g~i~~-LV~ll~~~--~~~~a~~~Al~aL~~L~ 254 (312)
+++.|.+=|+ +++......|..+|..+..-. ......|++. .++.. |++++... .+...++.++..+..-.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~-~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQ-DFVESVLVRTILPKNNPPTIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSH-HHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhH-HHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence 5666666676 478888899999999987432 4555668665 89999 89998532 12355566666665553
No 139
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=43.40 E-value=59 Score=31.68 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=54.9
Q ss_pred HhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHc
Q 021417 191 LKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAADKPIQKFVDM 270 (312)
Q Consensus 191 L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~ 270 (312)
..+|+..+|.-|+..|-.--..=++.. + .+|..+++|..|. +.+.++.|++.|-.+|.. ++..++
T Consensus 37 ~~kg~~k~K~LaaQ~I~kffk~FP~l~----~--~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~-----~~i~ki--- 101 (507)
T 3u0r_A 37 GVKGGTKEKRLAAQFIPKFFKHFPELA----D--SAINAQLDLCEDE-DVSIRRQAIKELPQFATG-----ENLPRV--- 101 (507)
T ss_dssp GGGSCHHHHHHHHHHHHHHGGGCGGGH----H--HHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT-----TCHHHH---
T ss_pred hcCCCHHHHHHHHHHHHHHHhhChhhH----H--HHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh-----hhhhhH---
Confidence 347788899999998888754334322 2 4788899998777 778888899999999875 466664
Q ss_pred CcHHHHHHHhhh
Q 021417 271 GLVSLLLETLVD 282 (312)
Q Consensus 271 G~V~~LvelL~~ 282 (312)
+.+|+++|..
T Consensus 102 --aDvL~QlLqt 111 (507)
T 3u0r_A 102 --ADILTQLLQT 111 (507)
T ss_dssp --HHHHHHHTTC
T ss_pred --HHHHHHHHhc
Confidence 4567777753
No 140
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.30 E-value=5 Score=27.11 Aligned_cols=45 Identities=9% Similarity=-0.036 Sum_probs=29.0
Q ss_pred chhhhhhHHHhhhh-------ccc-chh-hHHhhHHHHhhCCCcccccccccCC
Q 021417 7 VRLINLAKWLVESA-------WVA-LRL-FQERCEEELLWAAEMIKIKAQDLKG 51 (312)
Q Consensus 7 ~~~~~~~~~~~~~~-------~~~-~~~-~~er~~~e~~~G~~TCP~T~Q~L~~ 51 (312)
.+.|+.-...+.+| ++. =++ |=..+...|...+.+||+-++++..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 44566666666666 444 444 4444555566678999999888754
No 141
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.34 E-value=1.6 Score=30.38 Aligned_cols=48 Identities=8% Similarity=0.025 Sum_probs=31.6
Q ss_pred ccchhhhhhHHHhhhhccc-chhhH-HhhHHHHhhCCCcccccccccCCC
Q 021417 5 RHVRLINLAKWLVESAWVA-LRLFQ-ERCEEELLWAAEMIKIKAQDLKGK 52 (312)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~~-er~~~e~~~G~~TCP~T~Q~L~~~ 52 (312)
.+.+.|+.-...+.+|++. =+++| ..+...|...+.+||+-++++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHh
Confidence 3445677777777888755 44544 444555666668999988887643
No 142
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=36.78 E-value=3e+02 Score=26.69 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC
Q 021417 108 GRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP 169 (312)
Q Consensus 108 ~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~ 169 (312)
..+.-+.|-..+|.+..-|+.-+ .++..++..+ ++.++.|+.++.-|+.
T Consensus 27 ~~~~y~~Il~~~kg~~k~K~Laa-----Q~I~kffk~F--------P~l~~~Ai~a~lDLcE 75 (507)
T 3u0r_A 27 HKDAYQVILDGVKGGTKEKRLAA-----QFIPKFFKHF--------PELADSAINAQLDLCE 75 (507)
T ss_dssp GHHHHHHHHHGGGSCHHHHHHHH-----HHHHHHGGGC--------GGGHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHHhhC--------hhhHHHHHHHHHHHHh
Confidence 35567778888887776555422 3555666665 3567888877776654
No 143
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.74 E-value=9.2 Score=28.18 Aligned_cols=29 Identities=7% Similarity=-0.070 Sum_probs=23.4
Q ss_pred CCcccccccccCCCCccc--cchhh---hhhhch
Q 021417 39 AEMIKIKAQDLKGKEVKV--NTSLL---YQQTKF 67 (312)
Q Consensus 39 ~~TCP~T~Q~L~~~~l~P--N~tLr---Iq~Wc~ 67 (312)
+-+||+|++.+.+--.+| .|+-- |+.|..
T Consensus 7 ~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 7 GFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIE 40 (94)
T ss_dssp CCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHH
T ss_pred EeECcCcCchhcCCEEcCCCCCeecHHHHHHHHH
Confidence 578999999998766666 67654 999997
No 144
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=35.82 E-value=2.1e+02 Score=24.60 Aligned_cols=65 Identities=9% Similarity=0.105 Sum_probs=45.6
Q ss_pred CHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhc
Q 021417 183 SMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 255 (312)
Q Consensus 183 ~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~ 255 (312)
++|.+..+|..++--.|..|+-.|.+|+..++..+..| ..-+.=+.|. |.-..++.-..|..+..
T Consensus 182 fLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii-------~~kl~e~~D~-S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 182 FLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV-------IKRLEELNDT-SSLVNKTVKEGISRLLL 246 (253)
T ss_dssp GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH-------HHHHHHCCCS-CHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH-------HHHHHHhcCc-HHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999988876544333 3333334444 65555555555555543
No 145
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=32.39 E-value=5.7 Score=30.51 Aligned_cols=32 Identities=16% Similarity=0.148 Sum_probs=25.3
Q ss_pred hHHhhHHHHhhCCCcccccccccCCCCccccc
Q 021417 27 FQERCEEELLWAAEMIKIKAQDLKGKEVKVNT 58 (312)
Q Consensus 27 ~~er~~~e~~~G~~TCP~T~Q~L~~~~l~PN~ 58 (312)
|=..+..+|+..+.+||+-++++...++.|++
T Consensus 101 fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 101 FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred hhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 44445666777789999999999988888876
No 146
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=32.37 E-value=99 Score=28.75 Aligned_cols=84 Identities=13% Similarity=0.165 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCCCCc---------chHHHH
Q 021417 197 SRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSASAAD---------KPIQKF 267 (312)
Q Consensus 197 ~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~~~~---------~Nr~~~ 267 (312)
......+..|..|..........+ +.++.+..|+..+... .+..+..++..|..+|.++..+| .+....
T Consensus 73 ~~~~~~l~CLkalmN~~~Gl~~vl-~~~~~i~~l~~sL~s~-~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~ 150 (386)
T 2bnx_A 73 RNQHEIIRCLKAFMNNKFGIKTML-ETEEGILLLVRAMDPA-VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEM 150 (386)
T ss_dssp HHHHHHHHHHHHHTSSHHHHHHHH-HSSSHHHHHHHTCCTT-SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHH-cCcHHHHHHHHHhCCC-CchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHh
Confidence 344567778888875544444556 4558889999888544 78888999999999998862122 011111
Q ss_pred HHcCcHHHHHHHhhh
Q 021417 268 VDMGLVSLLLETLVD 282 (312)
Q Consensus 268 V~~G~V~~LvelL~~ 282 (312)
-+-.....|++.|.+
T Consensus 151 ~e~~RF~~lv~~l~~ 165 (386)
T 2bnx_A 151 DEVERFQPLLDGLKS 165 (386)
T ss_dssp HTSCTTHHHHHHTST
T ss_pred CchhhHHHHHHHHHc
Confidence 233466677777753
No 147
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=31.46 E-value=2.8e+02 Score=26.73 Aligned_cols=122 Identities=12% Similarity=0.088 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCCCChhHHHhccCC--CCHHHHHHHHhc---------------C--CHHHHHHHHHHHHHHhccchHHH
Q 021417 157 LEEILSTLTLLFPLAGEALTYLGSA--SSMHCMVWFLKS---------------G--DLSRRRNTVLVLREVISSDHRRV 217 (312)
Q Consensus 157 ~e~Al~iL~~L~~~~~e~k~~l~~~--~~l~~lv~~L~~---------------g--s~~~r~~Aa~lL~~Ls~~~~~~~ 217 (312)
+.-++..|..|.. .++.|..+.+. ..++.++.+++. | ...-.-++...+--| +.++...
T Consensus 185 ~~i~v~~L~~Ll~-~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlL-SF~~~~~ 262 (480)
T 1ho8_A 185 CYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLL-TFNPVFA 262 (480)
T ss_dssp HHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHH-TTSHHHH
T ss_pred HHHHHHHHHHHhc-chhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHH-HcCHHHH
Confidence 4445555555433 46677766432 357777666552 1 123344556666655 4556566
Q ss_pred HHhhhhhchH--HHHHHhhcCCCChHHHHHHHHHHHHhhcCCC-CCcchHHHHHHcCcHHHHHHHhh
Q 021417 218 NMFLEIEGAI--ESLYTLIKEPICPTATEASFVVVYHMITSAS-AADKPIQKFVDMGLVSLLLETLV 281 (312)
Q Consensus 218 ~~Ig~~~g~i--~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~-~~~~Nr~~~V~~G~V~~LvelL~ 281 (312)
+.+... ++. ..|+.+++...-...++-++.+|.|+..... +.......++-.|.+..+++.|.
T Consensus 263 ~~l~~~-~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 328 (480)
T 1ho8_A 263 NELVQK-YLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLS 328 (480)
T ss_dssp HHHHTT-SHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHhc-chHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHh
Confidence 666333 543 7788888876567899999999999987520 00012333444444467777775
No 148
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.07 E-value=6.5 Score=26.28 Aligned_cols=37 Identities=0% Similarity=-0.294 Sum_probs=16.9
Q ss_pred hhhhhhHHHhhhhccc-chhhHHhh-HHHHhh---CCCcccc
Q 021417 8 RLINLAKWLVESAWVA-LRLFQERC-EEELLW---AAEMIKI 44 (312)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~~~~~er~-~~e~~~---G~~TCP~ 44 (312)
+.||.-...+.+|++. =+++|=+. ...|+. ++.+||+
T Consensus 21 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 62 (63)
T 2ysj_A 21 VICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPL 62 (63)
T ss_dssp CBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSC
T ss_pred CCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcC
Confidence 4455555555566544 33333332 222332 4456664
No 149
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=29.27 E-value=2.9e+02 Score=24.24 Aligned_cols=162 Identities=9% Similarity=0.048 Sum_probs=95.9
Q ss_pred CchhhhHHHHHHHHHHHhchhhhHHHHhc-CCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCC-CChhHHHhccC-
Q 021417 104 DQTGGRDLVAKIKKWIKESERNKRCIVDY-GAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFP-LAGEALTYLGS- 180 (312)
Q Consensus 104 d~~~~~~al~~l~~lak~s~~nR~~l~~a-G~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~-~~~e~k~~l~~- 180 (312)
|.....+++..|........ +.++... .+.+.+.--+.+ .|..+...++.+|..+.. +.+.. -.+.+
T Consensus 59 d~k~~~~ale~L~~~l~~~~--~~~~~~lDll~kw~~lr~~d-------~N~~v~~~~L~~L~~l~~~l~~~~-y~~~~~ 128 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTSP--RSLLSNSDLLLKWCTLRFFE-------TNPAALIKVLELCKVIVELIRDTE-TPMSQE 128 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHCH--HHHHHTHHHHHHHHHHHTTS-------CCHHHHHHHHHHHHHHHHHHHHTT-CCCCHH
T ss_pred CHHHHHHHHHHHHHHhhhCh--HHHHHHHHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHHHHHHHhcc-ccchHH
Confidence 44555667777777655432 2333332 123333212211 245667777777665421 00000 01211
Q ss_pred --CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhcCCC
Q 021417 181 --ASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMITSAS 258 (312)
Q Consensus 181 --~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~~~~ 258 (312)
...+|.++.=|.......|..+-.++..+... .....+++.++.-+++. +.+.+..++..+.++....
T Consensus 129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v--------~~~~~v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~~- 198 (266)
T 2of3_A 129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV--------VGPLKMTPMLLDALKSK-NARQRSECLLVIEYYITNA- 198 (266)
T ss_dssp HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH--------HCHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHhc-
Confidence 23678887766555667888888888777422 23334677777777655 7899999999999986544
Q ss_pred CCcchHHHHHHcCcH---HHHHHHhhhcccchhhhhh
Q 021417 259 AADKPIQKFVDMGLV---SLLLETLVDAQRSLCEKPW 292 (312)
Q Consensus 259 ~~~~Nr~~~V~~G~V---~~LvelL~~~~~~~~e~aL 292 (312)
|-+ ...++ +.+.+++.|.+..|-+.|+
T Consensus 199 --G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl 228 (266)
T 2of3_A 199 --GIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAI 228 (266)
T ss_dssp --CSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHH
T ss_pred --CCC-----ccccccchHHHHHHHcCCCHHHHHHHH
Confidence 334 24478 9999999887777777776
No 150
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=28.30 E-value=2.1e+02 Score=30.19 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHH-hcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhc
Q 021417 180 SASSMHCMVWFL-KSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 255 (312)
Q Consensus 180 ~~~~l~~lv~~L-~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~ 255 (312)
++..++.++..| ++++...|..|+.+|-.++...+ . +.++..|..+..|. ++..++.|+.+|--+-.
T Consensus 609 ~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~-------~-~~aid~L~~L~~D~-d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 609 DYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG-------L-QSAIDVLDPLTKDP-VDFVRQAAMIALSMILI 676 (963)
T ss_dssp SCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC-------C-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC-------c-HHHHHHHHHHccCC-CHHHHHHHHHHHHHHhc
Confidence 456778888754 56799999999988887753322 1 24567777888776 77777777777766644
No 151
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.41 E-value=1.9e+02 Score=24.40 Aligned_cols=107 Identities=11% Similarity=0.023 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC
Q 021417 89 VLEINSKITAACKSEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF 168 (312)
Q Consensus 89 v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~ 168 (312)
+..+|.+.++..... +=.....+|-.+.+.++.+-+ .++..|..-|.+. ++.++-.||.+|..+.
T Consensus 6 ~~~~ie~AT~~~~~~---~dw~~~leicd~i~~~~~~~k-----~a~r~l~krl~~~-------n~~~~l~aL~Lle~~v 70 (220)
T 1dvp_A 6 FCKNLENATSHLRLE---PDWPSILLICDEINQKDVTPK-----NAFAAIKKKMNSP-------NPHSSCYSLLVLESIV 70 (220)
T ss_dssp HHHHHHHHHCTTCSS---CCHHHHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCS-------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCC---cCHHHHHHHHHhhcCCCcCHH-----HHHHHHHHHHcCC-------CHHHHHHHHHHHHHHH
Confidence 566777776543211 113455566666664442111 2445555555443 4577888888888764
Q ss_pred CCC-hhHHHhccCCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHh
Q 021417 169 PLA-GEALTYLGSASSMHCMVWFLKSG-DLSRRRNTVLVLREVI 210 (312)
Q Consensus 169 ~~~-~e~k~~l~~~~~l~~lv~~L~~g-s~~~r~~Aa~lL~~Ls 210 (312)
..- ..-...+++..+++.++.++.+. +.+.|.-+..++..-+
T Consensus 71 kNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 71 KNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 311 22234567777999999988754 5677777777777664
No 152
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=25.86 E-value=2.5e+02 Score=22.39 Aligned_cols=92 Identities=12% Similarity=0.221 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHH
Q 021417 111 LVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWF 190 (312)
Q Consensus 111 al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~ 190 (312)
.+.++.......+ -...+.+.|+..++..-|....++. -.+..+++..+.+|..| +.+. +.+.++ .|..+|-+
T Consensus 40 lL~~V~~~l~k~~-l~~~~ld~giL~~l~~WL~PLpDgs-LP~~~Ir~~lL~~L~~l-PI~~---e~Lk~S-glGkvv~~ 112 (145)
T 2xpp_A 40 NVEEISDILMSKA-LQESLLDEGILDEIKGWLEPLPDKS-MPNIKIRKRLLDVLKTM-KIHK---EHLVTS-GVGKIVYF 112 (145)
T ss_dssp HHHHHHHHHTCTT-THHHHHHTTHHHHHHHHHSCCTTSC-CCCHHHHHHHHHHHHTS-CCCH---HHHHHH-CHHHHHHH
T ss_pred hHHHHHHHHhhHH-HHHHHHHcCHHHHHHHHhCcCCCCC-CCCHHHHHHHHHHHHHC-CCCH---HHhhcC-CCCcchhh
Confidence 4444444444333 3456788999999998887653322 12568999999999998 5553 333333 45555555
Q ss_pred HhcC---CHHHHHHHHHHHHHH
Q 021417 191 LKSG---DLSRRRNTVLVLREV 209 (312)
Q Consensus 191 L~~g---s~~~r~~Aa~lL~~L 209 (312)
|... +.+.|.-|-.++..-
T Consensus 113 l~k~~~et~~nk~la~~Li~~W 134 (145)
T 2xpp_A 113 YSINPKESKEVRASAKALVQKW 134 (145)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHH
T ss_pred hhcCCccCHHHHHHHHHHHHHH
Confidence 5433 567777777777655
No 153
>4f8b_A NADPH-dependent 7-cyano-7-deazaguanine reductase; beta barrel, protein thioimide complex, pterin binding fold, fold; HET: GD1 PE4; 2.50A {Bacillus subtilis subsp} PDB: 4fgc_A*
Probab=25.04 E-value=18 Score=29.99 Aligned_cols=18 Identities=6% Similarity=-0.177 Sum_probs=11.8
Q ss_pred CcccccccccCC---CCcccc
Q 021417 40 EMIKIKAQDLKG---KEVKVN 57 (312)
Q Consensus 40 ~TCP~T~Q~L~~---~~l~PN 57 (312)
.-||+|+||=.- -+.+|+
T Consensus 54 SlCPvTGQPDfatI~I~Y~P~ 74 (165)
T 4f8b_A 54 SLCPKTGQPDFATIYISYIPD 74 (165)
T ss_dssp EECTTTCCEEEEEEEEEEECS
T ss_pred ecCCCCCCCcEEEEEEEEEeC
Confidence 479999998442 134555
No 154
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=24.70 E-value=1.4e+02 Score=30.15 Aligned_cols=144 Identities=15% Similarity=0.190 Sum_probs=83.4
Q ss_pred HHHHHHHHhcccCCCchhhhHHHHHHHHHHHhchh--hhHHHHhc--C-CHHHHHHH-hhccccccc-chhHHHHHHHHH
Q 021417 90 LEINSKITAACKSEDQTGGRDLVAKIKKWIKESER--NKRCIVDY--G-AVSVLAAA-FESFSKTCL-DEHVSVLEEILS 162 (312)
Q Consensus 90 ~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~~--nR~~l~~a--G-~v~~Lv~l-L~s~~~~~~-~~~~~v~e~Al~ 162 (312)
+.|+.+|-+. .| +.+.+|+-.||.+.+.... .|. ... . +++.+.-+ |+.+++=.+ .....|+|.+-.
T Consensus 177 E~L~~DLFdp---~W-EiRHGAALGLREILR~hG~GAGR~--~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQ 250 (800)
T 3oc3_A 177 EQISDNLLSY---EW-YKRHGAFLAFAAMFSEIDNGGDIQ--IRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAY 250 (800)
T ss_dssp HHHHHHTTCS---SH-HHHHHHHHHHHHHHHHCC----CC--CCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHH
T ss_pred HHHHHHhcCc---ch-hhhhHHHHHHHHHHHHhccCCcee--ccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHH
Confidence 4455666443 23 4566788888888876541 111 011 1 23333322 344443100 123445665544
Q ss_pred HHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHH
Q 021417 163 TLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTA 242 (312)
Q Consensus 163 iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a 242 (312)
+|..+...+++ -..+..++..+.+..++.|..+...|..+. + .+..-+++++.++.-|+|. +...
T Consensus 251 tLGaL~hLp~e-------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---D----LL~~Ld~Vv~aVL~GL~D~-DDDV 315 (800)
T 3oc3_A 251 LLSRIYPLIGP-------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---E----FVEDKDGLCRKLVSLLSSP-DEDI 315 (800)
T ss_dssp HHHHHTTTSCS-------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---G----GCCCHHHHHHHHHHHTTCS-SHHH
T ss_pred HHHHHHhCChh-------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---H----HHHHHHHHHHHHHhhcCCc-ccHH
Confidence 44443222322 345666666667789999999999999981 2 2212457888888888876 6667
Q ss_pred HHHHHHHHHHhh
Q 021417 243 TEASFVVVYHMI 254 (312)
Q Consensus 243 ~~~Al~aL~~L~ 254 (312)
+-.|+.+|.-++
T Consensus 316 RAVAAetLiPIA 327 (800)
T 3oc3_A 316 KLLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHhhhhc
Confidence 777888888777
No 155
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=23.78 E-value=2.1e+02 Score=23.13 Aligned_cols=71 Identities=8% Similarity=0.016 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhcccCCCchhhhHHHHHHHHHHHhch-hhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHH
Q 021417 87 VEVLEINSKITAACKSEDQTGGRDLVAKIKKWIKESE-RNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLT 165 (312)
Q Consensus 87 ~~v~~ll~~l~~~~~~~d~~~~~~al~~l~~lak~s~-~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~ 165 (312)
+.++.+.++|.. +++..+..||.=|-.+.+.+. .-...+++..+..-|+.++.... +..|++.++.++.
T Consensus 52 eA~ral~krl~~----~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~------~~~Vk~kil~li~ 121 (163)
T 1x5b_A 52 DCLKAIMKRVNH----KVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKA------HPKVCEKLKSLMV 121 (163)
T ss_dssp HHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTC------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCC------CHHHHHHHHHHHH
Confidence 445566677753 567777888888888888754 34445555577777888775321 4578888888877
Q ss_pred hc
Q 021417 166 LL 167 (312)
Q Consensus 166 ~L 167 (312)
..
T Consensus 122 ~W 123 (163)
T 1x5b_A 122 EW 123 (163)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 156
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=22.07 E-value=5.1e+02 Score=24.52 Aligned_cols=120 Identities=12% Similarity=0.085 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCCChhHHHhccCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhc
Q 021417 156 VLEEILSTLTLLFPLAGEALTYLGSASSMHCMVWFLKSGDLSRRRNTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIK 235 (312)
Q Consensus 156 v~e~Al~iL~~L~~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~ 235 (312)
|.-.+...|..|.. +.+..+-.+..+.+..+.-+.+-.+.+.-.....+|..+|....-++. .....++.++..++
T Consensus 259 VvtR~FDLL~LLmH-dSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t---~L~e~LPFi~~~i~ 334 (619)
T 3c2g_A 259 VIIRTFDLLGLLLH-DSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT---PLENILPFLLRLIE 334 (619)
T ss_dssp HHHHHHHHHHHHCC-SHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS---CCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-ccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc---cccccchHHHHHhc
Confidence 34445556666533 444455566778899999988888877777888999988633222222 33456788887776
Q ss_pred CCCChHHHHHHHHHHHHhhcCCCCCcchHHHHHHcCcHHHHHHHhhh
Q 021417 236 EPICPTATEASFVVVYHMITSASAADKPIQKFVDMGLVSLLLETLVD 282 (312)
Q Consensus 236 ~~~~~~a~~~Al~aL~~L~~~~~~~~~Nr~~~V~~G~V~~LvelL~~ 282 (312)
-..+...+-.+--.|.|+..++ -.-+.-++..|+++.|-.....
T Consensus 335 ~h~eDdvvYSGTGFLSNVVAHK---q~VKelAI~~nAI~LLh~~I~k 378 (619)
T 3c2g_A 335 IHPDDEVIYSGTGFLSNVVAHK---QHVKDIAIRSNAIFLLHTIISK 378 (619)
T ss_dssp HCCCHHHHHHHHHHHHHHSTTC---HHHHHHHHHTTHHHHHHHHHHT
T ss_pred cCCCcceEEecchHHHHHHhcc---cchHHHHhccCcHHHHHHHHhh
Confidence 3335677788888999999886 2567778888999998887763
No 157
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=21.25 E-value=11 Score=24.11 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=6.0
Q ss_pred CCcccccccccC
Q 021417 39 AEMIKIKAQDLK 50 (312)
Q Consensus 39 ~~TCP~T~Q~L~ 50 (312)
..+||+-++.+.
T Consensus 5 ~~~C~IC~~~~~ 16 (55)
T 2ecm_A 5 SSGCPICLEDIH 16 (55)
T ss_dssp CCSCTTTCCCCC
T ss_pred CCcCcccChhhc
Confidence 345555555543
No 158
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=21.12 E-value=2.5e+02 Score=28.91 Aligned_cols=108 Identities=9% Similarity=-0.027 Sum_probs=67.0
Q ss_pred cCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhcC-----------CCChhHHHhccCCCCHHHHHHHHhcCCHHHHH
Q 021417 132 YGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLLF-----------PLAGEALTYLGSASSMHCMVWFLKSGDLSRRR 200 (312)
Q Consensus 132 aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L~-----------~~~~e~k~~l~~~~~l~~lv~~L~~gs~~~r~ 200 (312)
.|+...|+.++.+.+. +..++--|.-.|-+.. ..+++.|..|. ..++..|.+.+...|.
T Consensus 34 p~~~~~L~~il~~~~~-----~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik-----~~ll~~l~~~~~~ir~ 103 (960)
T 1wa5_C 34 DGFGLTLLHVIASTNL-----PLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIK-----KEIVPLMISLPNNLQV 103 (960)
T ss_dssp TTHHHHHHHHHHCTTS-----CHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHH-----HHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHH-----HHHHHHHHhCCHHHHH
Confidence 3677888888864421 2344555544554432 11233333332 2345555556667777
Q ss_pred HHHHHHHHHhccchHHHHHhhhhhchHHHHHHhhcCCCChHHHHHHHHHHHHhhc
Q 021417 201 NTVLVLREVISSDHRRVNMFLEIEGAIESLYTLIKEPICPTATEASFVVVYHMIT 255 (312)
Q Consensus 201 ~Aa~lL~~Ls~~~~~~~~~Ig~~~g~i~~LV~ll~~~~~~~a~~~Al~aL~~L~~ 255 (312)
.++.++-.++.. + .-++=+++++.|+..+.++ ++.....|+.+|..+|.
T Consensus 104 ~l~~~ia~ia~~-d----~p~~Wp~ll~~L~~~l~s~-~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 104 QIGEAISSIADS-D----FPDRWPTLLSDLASRLSND-DMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp HHHHHHHHHHHH-H----STTTCTTHHHHHHTTCCSS-CTTHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHh-h----CccchhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 888888777532 1 1123368999999999876 67788899999999986
No 159
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=20.71 E-value=3.2e+02 Score=26.32 Aligned_cols=112 Identities=10% Similarity=-0.041 Sum_probs=68.9
Q ss_pred hhHHhhHHHHhhCCCcccccccccCCCCccccchhhhhhhchhhhhccccCCCCCCCCCChHHHHHHHHHHHhccc----
Q 021417 26 LFQERCEEELLWAAEMIKIKAQDLKGKEVKVNTSLLYQQTKFNLQREKSEGYAKLGIPMSSVEVLEINSKITAACK---- 101 (312)
Q Consensus 26 ~~~er~~~e~~~G~~TCP~T~Q~L~~~~l~PN~tLrIq~Wc~~~~~n~~~gv~tp~~p~~~~~v~~ll~~l~~~~~---- 101 (312)
.+||+|.-|-.+|+ .+..|=|+=- +=|.+|-.+=..+.+ ++.+.+.++.....
T Consensus 356 tsfDeY~~El~sG~------------L~WSP~H~se-~FW~ENa~kf~e~~~----------~llk~L~~iL~~~~~~~~ 412 (480)
T 1ho8_A 356 TSFDEYVAELDSKL------------LCWSPPHVDN-GFWSDNIDEFKKDNY----------KIFRQLIELLQAKVRNGD 412 (480)
T ss_dssp CHHHHHHHHHHHTC------------CCCCGGGGCH-HHHHHHSGGGSSGGG----------HHHHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHhcCC------------cccCCCccch-hHHHHHHHHHHhcch----------HHHHHHHHHHhhhccccc
Confidence 35889988888886 3455666421 337764111111111 33333333322110
Q ss_pred ---CCCchhhhHHHHHHHHHHHhchhhhHHHHhcCCHHHHHHHhhcccccccchhHHHHHHHHHHHHhc
Q 021417 102 ---SEDQTGGRDLVAKIKKWIKESERNKRCIVDYGAVSVLAAAFESFSKTCLDEHVSVLEEILSTLTLL 167 (312)
Q Consensus 102 ---~~d~~~~~~al~~l~~lak~s~~nR~~l~~aG~v~~Lv~lL~s~~~~~~~~~~~v~e~Al~iL~~L 167 (312)
+.|+.-..=|...|-.+++..++-|..+.+-|+=..+..++... +.+|+.+||.++..+
T Consensus 413 ~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-------d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 413 VNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-------DSRVKYEALKATQAI 474 (480)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-------SHHHHHHHHHHHHHH
T ss_pred cccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-------CHHHHHHHHHHHHHH
Confidence 12333333388999999999999998888889988888888543 468999998876543
Done!