BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021418
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EK2|A Chain A, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
Reductase From Burkholderia Pseudomallei 1719b
pdb|3EK2|B Chain B, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
Reductase From Burkholderia Pseudomallei 1719b
pdb|3EK2|C Chain C, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
Reductase From Burkholderia Pseudomallei 1719b
pdb|3EK2|D Chain D, Crystal Structure Of Eonyl-(Acyl Carrier Protein)
Reductase From Burkholderia Pseudomallei 1719b
Length = 271
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 247 VKIVGISGIRSELEFIKFVLSNSPVLETMTIKPASLEGGWDLIKELLRFRRASARAEIIY 306
+K + SGI+S + + FV SNSP+ +TI+ G + LL + AE+++
Sbjct: 200 IKTLAASGIKSFGKILDFVESNSPLKRNVTIEQVGNAGAF-----LLSDLASGVTAEVMH 254
Query: 307 LD 308
+D
Sbjct: 255 VD 256
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 28 CQNLIHLELFNCLLKPPST---FKGFRNLKSLDL--QHITLSQDVFENLISSSPTLERLT 82
C NL HL L +K ST K NLKSLDL +T EN+ P
Sbjct: 92 CPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNAYRENVFKLLP-----Q 146
Query: 83 LMNFDGFTHLNIDAPN 98
+M DG+ N +AP+
Sbjct: 147 VMYLDGYDRDNKEAPD 162
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 30 NLIHLEL-FNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG 88
+L HL+L FN + + F G L+ LD QH TL + V E S+ +LE+L ++
Sbjct: 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR-VTE--FSAFLSLEKLLYLDI-S 432
Query: 89 FTHLNIDAPNLQFFDIGGVFDDVTFENTFHLA 120
+T+ ID FD G+F +T NT +A
Sbjct: 433 YTNTKID------FD--GIFLGLTSLNTLKMA 456
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 13/92 (14%)
Query: 30 NLIHLEL-FNCLLKPPSTFKGFRNLKSLDLQHITLSQDVFENLISSSPTLERLTLMNFDG 88
+L HL+L FN + + F G L+ LD QH TL + V E S+ +LE+L ++
Sbjct: 372 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR-VTE--FSAFLSLEKLLYLDI-S 427
Query: 89 FTHLNIDAPNLQFFDIGGVFDDVTFENTFHLA 120
+T+ ID FD G+F +T NT +A
Sbjct: 428 YTNTKID------FD--GIFLGLTSLNTLKMA 451
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 28 CQNLIHLELFNCLLKPPST---FKGFRNLKSLDL--QHITLSQDVFENLISSSPTLERLT 82
C NL HL L +K ST K NLKSLDL +T D EN+ P L L
Sbjct: 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL- 145
Query: 83 LMNFDGF 89
DG+
Sbjct: 146 ----DGY 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,164,120
Number of Sequences: 62578
Number of extensions: 373415
Number of successful extensions: 865
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 13
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)